lowQualScore : 11 111111111 1111 3333333333333 1 111 11111 777777777777 11111111
lowQualScore : 66 5 55 3 000000000 2222 55 99 3 3 888 3333333333333 4 7 2 55 55 5 999999 3 3 0 3 77 6 3 44 777 44 3 3 3 2 2 2 33 2 2 33 2 3 3 44 77 3 33333 3 000000000000 4 00000000 3 1 4 55 66 777 4 55 3 5
lowQualScore : .. . .. . ......... .... .. .. . . ... ............. . . . .. .. . ...... . . . . .. . . .. ... .. . . . . . . .. . . .. . . . .. .. . ..... . ............ . ........ . . . .. .. ... . .. . .
lowQualScore : 99 8 44 6 999999999 7777 00 33 6 3 333 3333333333333 2 3 6 55 00 4 666666 3 3 4 1 33 2 1 22 777 22 1 3 2 9 9 9 99 9 9 99 9 1 1 22 33 1 66666 3 222222222222 0 99999999 2 6 0 55 11 888 4 11 9 7
consensus : TCAAGTGTAAT--GAAAATGAAAAC-CCCTCAAATGT-TGAT--A------TA----TT--GTN-A-ATTTCAC-TT--AAAAAN--TATTA-A--TTTTTGAAA-GTTTCTGA--TTTTTT--ACTGATA------CAT-A-AATGTTTGA-AATACCT-TTTT-AAA-G--A-T-GAC--AATA-TTCAAT-ATACCCGACTGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-GATA--G--TA-AA-T-CTAGC-A--ATGA---T-AAGCC-TA-T--A--AGAAAATGGCAT-A--TT--TT---C-TGGATAGCA-ATGA-AAGTGAC
Reference ( gi|3 ) : TCAAGTATAAT--GAAAATAAAAAA-CCCTCAAATGT-TGAT--A------TA----TT--GTA-A-ATTTCAC-TT--AAAAAA--TATTA-A--TTTTTGTAA-GTTTCTGA--TTTTTT--ATTGATA------CAT-A-AATGTTTGA-AATACCC-TTTT-AAA-G--A-C-GAC--AATA-TTCAAT-ATACCCGACTGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-GATA--G--TA-AA-T-CTAGC-ATTAT-A---T-GAGCC-TA-T--A--GGAAAATGGCAT-A--TT--TT---C-TGGATAGCA-GTAA-AAGTGAC
gi|2 : TCAAGTATAAT--GAAAATGAAAAC-CCCTCAAATGT-TGAT--A------TA----TT--GTA-A-ATTTCAC-TT--AAAATT--T-TTA-A--TTTTTGAAA-GATTCTGA--TTTTTT--ATTGATATTGATACAT-A-CATGTTTGA-AATACCT-TTTTTAAA-G--ATC-GAC--AATAATTCAAT-ATACCCGACTGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-GATA--G--TA-AA-T-CTAGC-A--ATGA---T-AAGCC-TA-T--A--AG-AAAT-GCAT-A--
gi|4 : taaaggTCAAGTGTAAT--GAAAATAAAACC-CCCTCAAATGT-TGAT--ACACATGTA----TT--GTC-A-ATTTCAC-TT--AAAA----T-TTA-AATTTTTTGAAA-GTTTCAAA--TTTTTT--ATTGATA------CAT-A-AATGTTTGA-AATACCT-TTTT-AAA-G--A-T-GAC--AATA-TTCAAT-ATACCCG----------AC-G--TTTCCT-G-ATTATGAT--GTCATC-AGAGACA-TT-TATG--G--TA-AA-A-CAAGT-A--ATGA---T-AAGCC-TA-T--G--AGAAAATTGCAT-A--TT--TT---C-CGGATAACA-ATGT-ACATGACaatgaaagtgacgg
gi|1 : gTCAAGTGTAAT--GAAGATGAAAAA-ACCCCAAATGT-TGAT--A------TA----TC--GTC-A-ATTCTAC-TTTTAAAAAA--TTGTA-C--TTTTTGAGA-GTTTCTGA--TTTTTT--ACTGATA------CAT-A-AATGTTTGA-AATACCT-TTTT-AAA-G--ATT-GAA--AATA-TTCAAT-ATAACCAACAAG-G-TTAC-G--TTCCGT-A-TTTATTAT--GTCATC-AGAGACA-TT-GCAA--GT-TA-AA-T-A-AGTAATGAT-T---TAAAGCC-TT-T--A--AGAAAATGCCAT-A--TT--TT---C-TGAATAACA-AT
gi|8 : aaggTCAAGTATAATCTGAAAATAAAAAAACCCTCAAATGT-TGAT--A-------A----TT--GTATATATTTTAC-TT--TAATAA--TAT-A-A--TTTTGTTAA-GTTTCTGA--TTTTTT--A--GA-A------CAT-ATAATGTT-GA-AATACCC-TTT--AAA-G--A-T-GACCCAATA-TTCAATTATACCTGACTGA-G-TTAC-GGTTTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT--ATA--G--TA-AA-g
gi|6 : tttactactttaggTCAAGTGTAAT--GAAAA------G-TCC-CAAATGT-TGAT--A------TAGTTATT--ATG-A-ATTTCAC-C---AAAAAAGGTGTTA----TTTTTGAAA-TTTTCAGA--TTACTT--ACTGATG------TATTA-AGCGTG-GA-AATACCT-TTTTTAAA-GTTA-C---C--AGCA-TTCAAT-ATAACCAAC-GATG-CTAC-T--TTCCCT-G-AGTATGAC--GTTATC-AGAAA------GA-A--G--TA--------AGG-AT-----------AACC-CATT--A--AGAAAATGGCAT-A--TT--TT---C-TGCATAGCA-ATGA-AAATGA
gi|15 : caatgTCAAGTATAAT--GAAAAT-AAAAC-CCCTC-AATGTGTGATTGA------TAAT--TT--GTA-A-ATTTCACGTT--AAAA
gi|9 : ggTAAT--GAAAATGAAAAC-CCCTCTAAGGT-TGAT--A------TA----TT--GTC-A-ATTTCAC-TT--AAAGAT--TAT-A-A--TTTTTGGAAAGTTTCTGA--TTTTTA--ATTGATA------CAT-A-AATGTTTGA-AATACCT-TTAC-AAA-G--ATT-GAC--AATA-TCCAAT-ATACCCGA-GGA-GAATAC-G--TCCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-GATA--G--TA-AA-T-CAAGT-At
gi|16 : aagg--GAAAATAAAAAC-CCCTCAAACG----AT--A------TA----TT--GTC-A-ATTTCAC-TT--TGAATT--TA-TA-A--TTTTTGAAA-atgg
gi|5 : AAAATGAAAAC-TCCTCAAATGT-TGAT---------TA----TTGGGTA-A-A-TTCAC-TT---AAAAG--TATGAGA--GTTTGAAAA-GTCTTCGA----TTTT--A-TGATA------C-C-A-ATTGGTTGAGAATA-CC-TTTT-AAACG--A-CTGAC--AATA--TCAAT-ATAGCCCAATGA-T-TTACTG--TTCCCTGG-AT--TGATCGGTCAAC-AGAGGCAGTTGGATA--G--TAGAA-T-T--GC-A--ATGA---T-AAG-C-TA-TCAA--GAAAAATACAAT-A--TT--TT---C-TGGATGCCACATGATAAGTG
gi|7 : aagtATGAAAA---CCTCAAAATT-TGAT--A------TT----TC--GTT-A-AATTCAC-TT--TAA------ATTATA--ATTTTG-AA-ATTTA-GATTTTTTTT--ATTGATA-------AT---AAT-TTTGA-AAT-----CTTT-AAA-A--A-T-GTA--AATA-TTCAA--ATACTGAACTGA-G-TTA-----TTCCAT-G-ATT-TGAC--GTCGAT-AGAGACC-TT-GATAATG--TA-AAGT-CTGGC-A-----AGGGT-AAGCTATA-T--A--GG--AATGACAT-AATTT--CT---C-TGGATAGCA-G
gi|13 : -CTCCCAAATGT-TGAT--A------TA----TT--GTC-A-ATTTCAC-TT--AGAAA---------------TTGTAAAGTTTGTGA--TTTTTTTTACTGATA------CAT-A-GATGTTTGA-AATACGTGTTTT-AAG-A--G-T-AAC--AACA-TTCAAT-ATTACCGACGAG-G-TTAC-G--TCCCTT-G-TTTATGAC--ATCATC-A
gi|10 : TCAC-TT--TAAAAT--TAAAA-A--TTTT-GAAA-GTTTCTGA--TTTTTT--ATTGATA------CAT-A-AATGTTTGA-AATACAT-TTTT-AAA-G--A-T-GAC--GATA-TTCAAT-GTACCCGACTGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTTATC-AGAGACA-TT-GATA--G--TA-AA-T-CTAGC-A--ATGA---T-AAGTC-TA---------------G-AT-A--TT--TC---C-TGAATAGCA-ATAA-AAGTGACtt
gi|11 : TTTT--ACTGATA------CAT-A-AATGTTTGA-AATACCT-GTTT-TAA-G--A-TTGAC--AATA-TCCAAT-ATAACCGACTAG-G-TTAC-G--TTTCCT-G-TTTATGAC--ATCATC-AGACACA-TT-GATA--G--TA-------CAAC-A--ATGA---T-AAACC-TA-C--A--AGAAAATGACCT-T--TT--TTTGGC-TGGATAACG-ATGA-CGATGA
gi|12 : TGATA------CAT-A-AATGTTGGA-AATACCT-TCCT-AAA-G--A-T-GAC--AATA-TCAAAT-ATACCCGACGAG-G-TTAC-A--CTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-CATA--G--TA-AA-A-TAAGT-A--ATGA---T-AAGCC-TA-T--G--AGAAAATGGCAT-A--TT--TT---C-TGGATAACA-GTGA-AAGTGACaaatgacgg
gi|18 : GTTTGT-AATACCT-TTCT-AAA-G--A-T-GAC--GATA-TTCAA
gi|14 : TACCCGACTGA-G-TTAC-G--TTCCTT-GAATTATGAC--GTCATCAAGAGACA-CT-GATA--GCATA-AA-TCCTAGC-A-----A---T-GATAC-TG-T--AACGAAAAATGGGATAA--TTAATT---CTTGGA-AGTC-GTGA-AAGTG
gi|17 : TGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTCATC-TGAGACA-CT-GATA--G--TA-AA-T-CTAGC-ATtacgga
Alignments
lowQualScore : 1111 11 11111
lowQualScore : 66 2 3 3 44 999999 1111 44 44 3 3 888 44 66 3 777 55 44 6 888888 3 3 2 2 5 8 5 33 2 3 2 2 2 2 33 2 2 33 2 2 2 33 66 2 22222 44 666 3 3 3 55 88 0 3 55 55 666 3 0 3 4
lowQualScore : .. . . . .. ...... .... .. .. . . ... .. .. . ... .. .. . ...... . . . . . . . .. . . . . . . .. . . .. . . . .. .. . ..... .. ... . . . .. .. . . .. .. ... . . . .
lowQualScore : 11 6 3 3 66 666666 7777 66 33 3 1 888 33 88 3 777 00 66 3 888888 1 1 9 9 7 6 7 99 9 1 4 7 7 7 77 7 7 77 7 9 9 99 88 9 33333 22 444 6 6 6 00 00 5 6 00 00 444 6 4 6 4
consensus : TCAAGTGTAAT--GAAAATGAAAAC-CCCTCAAATGT-TGAT--A------TA----TT--GTN-A-ATTTCAC-TT--AAAAAT-TATTA-ATTTT-T-GAAAGTTTCTGA--TTTTTT--ATTGATA------CAT-A-AATGTTTGA-AATACCT-TTTT-AAAGA-T-GAC--AATA-TTCAAT-ATACCCGACTGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-GATA--G--TA-AA-T-CTAGCA--ATGAT---AAGCC-TA-T-AA--G-AAAATGGCAT-A--TT--TT---C-TGGATAGCA-ATGA-AAGTGAC
Reference ( family-881 ) : TCAAGTGTAAT--GAAAATGAAAAC-CCCTCAAATGT-TGAT--A------TA----TT--GTN-A-ATTTCAC-TT--AAAAAN-TATTA-ATTTT-T-GAAAGTTTCTGA--TTTTTT--ACTGATA------CAT-A-AATGTTTGA-AATACCT-TTTT-AAAGA-T-GAC--AATA-TTCAAT-ATACCCGACTGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-GATA--G--TA-AA-T-CTAGCA--ATGAT---AAGCC-TA-T-AA--G-AAAATGGCAT-A--TT--TT---C-TGGATAGCA-ATGA-AAGTGAC
gi|1 : TCAAGTGTAAT--GAAGATGAAAAA-ACCCCAAATGT-TGAT--A------TA----TC--GTC-A-ATTCTAC-TTTTAAAAAA-TTGTA-CTTTT-T-GAGAGTTTCTGA--TTTTTT--ACTGATA------CAT-A-AATGTTTGA-AATACCT-TTTT-AAAGATT-GAA--AATA-TTCAAT-ATAACCAACAAG-G-TTAC-G--TTCCGT-A-TTTATTAT--GTCATC-AGAGACA-TT-GCAA--GT-TA-AA-T-A-AGTA--ATGATTTAAAGCC-TT-T-AA--G-AAAATGCCAT-A--TT--TT---C-TGAATAACA-ATG
gi|10 : aaggTCAC-TT--TAAAAT-TAAAA-ATTTT---GAAAGTTTCTGA--TTTTTT--ATTGATA------CAT-A-AATGTTTGA-AATACAT-TTTT-AAAGA-T-GAC--GATA-TTCAAT-GTACCCGACTGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTTATC-AGAGACA-TT-GATA--G--TA-AA-T-CTAGCA--ATGAT---AAGTC-T-----A--G---------AT-A--TT--TC---C-TGAATAGCA-ATAA-AAGTGAC
gi|11 : TTTT--ACTGATA------CAT-A-AATGTTTGA-AATACCT-GTTT-TAAGA-TTGAC--AATA-TCCAAT-ATAACCGACTAG-G-TTAC-G--TTTCCT-G-TTTATGAC--ATCATC-AGACACA-TT-GATA--G--TA-------CAACA--ATGAT---AAACC-TA-C-AA--G-AAAATGACCT-T--TT--TTTGGC-TGGATAACG-ATGA-CGATGA
gi|12 : TGATA------CAT-A-AATGTTGGA-AATACCT-TCCT-AAAGA-T-GAC--AATA-TCAAAT-ATACCCGACGAG-G-TTAC-A--CTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-CATA--G--TA-AA-A-TAAGTA--ATGAT---AAGCC-TA-T-GA--G-AAAATGGCAT-A--TT--TT---C-TGGATAACA-GTGA-AAGTGACaaatgacgg
gi|13 : -CTCCCAAATGT-TGAT--A------TA----TT--GTC-A-ATTTCAC-TT--AGAAAT-TGT------------AAAGTTTGTGA--TTTTTTTTACTGATA------CAT-A-GATGTTTGA-AATACGTGTTTT-AAGAG-T-AAC--AACA-TTCAAT-ATTACCGACGAG-G-TTAC-G--TCCCTT-G-TTTATGAC--ATCATC-A
gi|14 : TACCCGACTGA-G-TTAC-G--TTCCTT-GAATTATGAC--GTCATCAAGAGACA-CT-GATA--GCATA-AA-TCCTAGCA--ATGAT---A---C-TG-T-AACGA-AAAATGGGATAA--TTAATT---CTTGGA-AGTC-GTGA-AAGTGtt
gi|15 : TCAAGTATAAT--GAAAAT-AAAAC-CCCTC-AATGTGTGATTGA------TAAT--TT--GTA-A-ATTTCACGTT--AAAAtacgga
gi|16 : gg--GAAAATAAAAAC-CCCTCAAACG----AT--A------TA----TT--GTC-A-ATTTCAC-TT--TGAATT-TA-TA-ATTTT-T-GAAAt
gi|17 : TGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTCATC-TGAGACA-CT-GATA--G--TA-AA-T-CTAGCA--
gi|18 : GTTTGT-AATACCT-TTCT-AAAGA-T-GAC--GATA-TTCAAt
gi|2 : TCAAGTATAAT--GAAAATGAAAAC-CCCTCAAATGT-TGAT--A------TA----TT--GTA-A-ATTTCAC-TT--AAAATT-T-TTA-ATTTT-T-GAAAGATTCTGA--TTTTTT--ATTGATATTGATACAT-A-CATGTTTGA-AATACCT-TTTTTAAAGA-TCGAC--AATAATTCAAT-ATACCCGACTGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-GATA--G--TA-AA-T-CTAGCA--ATGAT---AAGCC-TA-T-AA--G--AAAT-GCAT-A---------------------A-ATGA-AAGTGAC
gi|3 : taaaggTCAAGTATAAT--GAAAATAAAAAA-CCCTCAAATGT-TGAT--A------TA----TT--GTA-A-ATTTCAC-TT--AAAAAA-TATTA-ATTTT-T-GTAAGTTTCTGA--TTTTTT--ATTGATA------CAT-A-AATGTTTGA-AATACCC-TTTT-AAAGA-C-GAC--AATA-TTCAAT-ATACCCGACTGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-GATA--G--TA-AA-T-CTAGCATTAT-AT---GAGCC-TA-T-AG--G-AAAATGGCAT-A--TT--TT---C-TGGATAGCA-GTAA-AAGTGACgg
gi|4 : TCAAGTGTAAT--GAAAATAAAACC-CCCTCAAATGT-TGAT--ACACATGTA----TT--GTC-A-ATTTCAC-TT--AAAATT-TA--A-ATTTTTT-GAAAGTTTCAAA--TTTTTT--ATTGATA------CAT-A-AATGTTTGA-AATACCT-TTTT-AAAGA-T-GAC--AATA-TTCAAT-ATACCCG----------AC-G--TTTCCT-G-ATTATGAT--GTCATC-AGAGACA-TT-TATG--G--TA-AA-A-CAAGTA--ATGAT---AAGCC-TA-T-GA--G-AAAATTGCAT-A--TT--TT---C-CGGATAACA-ATGT-ACATGAC
gi|5 : gAAAATGAAAAC-TCCTCAAATGT-TGAT---------TA----TTGGGTA-A-A-TTCAC-TT---AAAAG-TATGAGAGTTT-G-AAAAGTCTTCGA----TTTT--A-TGATA------C-C-A-ATTGGTTGAGAATACCT-TTTA-AACGACT-GAC--AATA--TCAAT-ATAGCCCAATGA-T-TTACTG--TTCCCTGG-AT--TGATCGGTCAAC-AGAGGCAGTTGGATA--G--TAGAA-T-T--GCA--ATGAT---AAG-C-TA-TCAA--GAAAAATACAAT-A--TT--TT---C-TGGATGCCACATGATAAGTG
gi|6 : aagtTCAAGTGTAAT--GAAAA-----GT-CCC--AAATGT-TGAT--A------TAGTTATT--ATG-A-ATTTCAC-CA--AAAAAGGTGTTA--TTTT-T-GAAATTTTCAGA--TTACTT--ACTGATG------TATTA-AGCGTG-GA-AATACCT-TTTTTAAAGT-T-ACC--AGCA-TTCAAT-ATAACCAAC-GATG-CTAC-T--TTCCCT-G-AGTATGAC--GTTATC-AGAAA------GA-A--G--TA-AG-------------GAT---AA-CC-CATT-AA--G-AAAATGGCAT-A--TT--TT---C-TGCATAGCA-ATGA-AAATGA
gi|7 : caatgATGAAAAC-C--TCAAAATT-TGAT--A------TT----TC--GTT-A-AATTCAC-TT---TAAAT-TA-TA-A-TTT-T-GAAA--TTTAGATTTTTTTT--ATTGATA-------AT---AAT-TTTGA-AA----T-CTTT-AAAAA-T-GTA--AATA-TTCAA--ATACTGAACTGA-G-TTA-----TTCCAT-G-ATT-TGAC--GTCGAT-AGAGACC-TT-GATAATG--TA-AAGT-CTGGCA--AGGGT---AAGCTATA-T-AG--G---AATGACAT-AATTT--CT---C-TGGATAGCA-
gi|8 : TCAAGTATAATCTGAAAATAAAAAAACCCTCAAATGT-TGAT--A-------A----TT--GTATATATTTTAC-TT--TAATAA-TAT-A-ATTTT-G-TTAAGTTTCTGA--TTTTTT--A--GA-A------CAT-ATAATGTT-GA-AATACCC-TTT--AAAGA-T-GACCCAATA-TTCAATTATACCTGACTGA-G-TTAC-GGTTTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT--ATA--G--TA-AA-g
gi|9 : tttactactttaggAAG-GTAAT--GAAAATGAAAAC-CCCTCTAAGGT-TGAT--A------TA----TT--GTC-A-ATTTCAC-TT--AAAGAT-TA-TA-ATTTT-TGGAAAGTTTCTGA--TTTTTA--ATTGATA------CAT-A-AATGTTTGA-AATACCT-TTAC-AAAGATT-GAC--AATA-TCCAAT-ATACCCGA-GGA-GAATAC-G--TCCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-GATA--G--TA-AA-T-CAAGTA--ATG
Alignments
lowQualScore : 1111 11 11111
lowQualScore : 66 2 3 3 44 999999 1111 44 44 3 3 6666 44 88 3 777 55 44 4 888888 3 3 2 2 5 8 5 33 2 3 2 2 2 2 33 2 2 33 2 2 2 33 66 2 22222 44 666 3 3 3 55 88 0 3 55 55 666 3 0 3 4
lowQualScore : .. . . . .. ...... .... .. .. . . .... .. .. . ... .. .. . ...... . . . . . . . .. . . . . . . .. . . .. . . . .. .. . ..... .. ... . . . .. .. . . .. .. ... . . . .
lowQualScore : 11 6 3 3 66 666666 7777 66 33 3 1 2222 88 99 3 777 00 66 2 888888 1 1 9 9 7 6 7 99 9 1 4 7 7 7 77 7 7 77 7 9 9 99 88 9 33333 22 444 6 6 6 00 00 5 6 00 00 444 6 4 6 4
consensus : TCAAGTGTAAT--GAAAATGAAAAC-CCCTCAAATGT-TGAT--A------TA----TT--GTN-A-ATTTCAC-TT---AAAAAT-TATTA-ATTTT-T-GAAAGTTTCTGA--TTTTTT--ATTGATA------CAT-A-AATGTTTGA-AATACCT-TTTT-AAAGA-T-GAC--AATA-TTCAAT-ATACCCGACTGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-GATA--G--TA-AA-T-CTAGCA--ATGAT---AAGCC-TA-T-AA--G-AAAATGGCAT-A--TT--TT---C-TGGATAGCA-ATGA-AAGTGAC
Reference ( family-881 ) : TCAAGTGTAAT--GAAAATGAAAAC-CCCTCAAATGT-TGAT--A------TA----TT--GTN-A-ATTTCAC-TT---AAAAAT-TATTA-ATTTT-T-GAAAGTTTCTGA--TTTTTT--ATTGATA------CAT-A-AATGTTTGA-AATACCT-TTTT-AAAGA-T-GAC--AATA-TTCAAT-ATACCCGACTGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-GATA--G--TA-AA-T-CTAGCA--ATGAT---AAGCC-TA-T-AA--G-AAAATGGCAT-A--TT--TT---C-TGGATAGCA-ATGA-AAGTGAC
gi|1 : TCAAGTGTAAT--GAAGATGAAAAA-ACCCCAAATGT-TGAT--A------TA----TC--GTC-A-ATTCTAC-TTTTAAAAAAT-TGT-A-CTTTT-T-GAGAGTTTCTGA--TTTTTT--ACTGATA------CAT-A-AATGTTTGA-AATACCT-TTTT-AAAGATT-GAA--AATA-TTCAAT-ATAACCAACAAG-G-TTAC-G--TTCCGT-A-TTTATTAT--GTCATC-AGAGACA-TT-GCAA--GT-TA-AA-T-A-AGTA--ATGATTTAAAGCC-TT-T-AA--G-AAAATGCCAT-A--TT--TT---C-TGAATAACA-ATG
gi|10 : aaggTCAC-TT---TAAAAT-TAAAA-ATTTT---GAAAGTTTCTGA--TTTTTT--ATTGATA------CAT-A-AATGTTTGA-AATACAT-TTTT-AAAGA-T-GAC--GATA-TTCAAT-GTACCCGACTGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTTATC-AGAGACA-TT-GATA--G--TA-AA-T-CTAGCA--ATGAT---AAGTC-T-----A--G---------AT-A--TT--TC---C-TGAATAGCA-ATAA-AAGTGAC
gi|11 : TTTT--ACTGATA------CAT-A-AATGTTTGA-AATACCT-GTTT-TAAGA-TTGAC--AATA-TCCAAT-ATAACCGACTAG-G-TTAC-G--TTTCCT-G-TTTATGAC--ATCATC-AGACACA-TT-GATA--G--TA-------CAACA--ATGAT---AAACC-TA-C-AA--G-AAAATGACCT-T--TT--TTTGGC-TGGATAACG-ATGA-CGATGA
gi|12 : TGATA------CAT-A-AATGTTGGA-AATACCT-TCCT-AAAGA-T-GAC--AATA-TCAAAT-ATACCCGACGAG-G-TTAC-A--CTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-CATA--G--TA-AA-A-TAAGTA--ATGAT---AAGCC-TA-T-GA--G-AAAATGGCAT-A--TT--TT---C-TGGATAACA-GTGA-AAGTGACaaatgacgg
gi|13 : -CTCCCAAATGT-TGAT--A------TA----TT--GTC-A-ATTTCAC-TT---AGAAAT-TGT------------AAAGTTTGTGA--TTTTTTTTACTGATA------CAT-A-GATGTTTGA-AATACGTGTTTT-AAGAG-T-AAC--AACA-TTCAAT-ATTACCGACGAG-G-TTAC-G--TCCCTT-G-TTTATGAC--ATCATC-A
gi|14 : TACCCGACTGA-G-TTAC-G--TTCCTT-GAATTATGAC--GTCATCAAGAGACA-CT-GATA--GCATA-AA-TCCTAGCA--ATGAT---A---C-TG-T-AACGA-AAAATGGGATAA--TTAATT---CTTGGA-AGTC-GTGA-AAGTGtt
gi|15 : TCAAGTATAAT--GAAAAT-AAAAC-CCCTC-AATGTGTGATTGA------TAAT--TT--GTA-A-ATTTCACGTT---AAAAtacgga
gi|16 : gg--GAAAATAAAAAC-CCCTCAAACG----AT--A------TA----TT--GTC-A-ATTTCAC-TT---TGAATT-TA-TA-ATTTT-T-GAAAt
gi|17 : TGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTCATC-TGAGACA-CT-GATA--G--TA-AA-T-CTAGCA--
gi|18 : GTTTGT-AATACCT-TTCT-AAAGA-T-GAC--GATA-TTCAAt
gi|2 : TCAAGTATAAT--GAAAATGAAAAC-CCCTCAAATGT-TGAT--A------TA----TT--GTA-A-ATTTCAC-TT---AAAATT-T-TTA-ATTTT-T-GAAAGATTCTGA--TTTTTT--ATTGATATTGATACAT-A-CATGTTTGA-AATACCT-TTTTTAAAGA-TCGAC--AATAATTCAAT-ATACCCGACTGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-GATA--G--TA-AA-T-CTAGCA--ATGAT---AAGCC-TA-T-AA--G--AAAT-GCAT-A---------------------A-ATGA-AAGTGAC
gi|3 : taaaggTCAAGTATAAT--GAAAATAAAAAA-CCCTCAAATGT-TGAT--A------TA----TT--GTA-A-ATTTCAC-TT---AAAAAA-TATTA-ATTTT-T-GTAAGTTTCTGA--TTTTTT--ATTGATA------CAT-A-AATGTTTGA-AATACCC-TTTT-AAAGA-C-GAC--AATA-TTCAAT-ATACCCGACTGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-GATA--G--TA-AA-T-CTAGCATTAT-AT---GAGCC-TA-T-AG--G-AAAATGGCAT-A--TT--TT---C-TGGATAGCA-GTAA-AAGTGACgg
gi|4 : TCAAGTGTAAT--GAAAATAAAACC-CCCTCAAATGT-TGAT--ACACATGTA----TT--GTC-A-ATTTCAC-TT---AAAATT-TA--A-ATTTTTT-GAAAGTTTCAAA--TTTTTT--ATTGATA------CAT-A-AATGTTTGA-AATACCT-TTTT-AAAGA-T-GAC--AATA-TTCAAT-ATACCCG----------AC-G--TTTCCT-G-ATTATGAT--GTCATC-AGAGACA-TT-TATG--G--TA-AA-A-CAAGTA--ATGAT---AAGCC-TA-T-GA--G-AAAATTGCAT-A--TT--TT---C-CGGATAACA-ATGT-ACATGAC
gi|5 : gAAAATGAAAAC-TCCTCAAATGT-TGAT---------TA----TTGGGTA-A-A-TTCAC-TT---AAAAG--TATGAGAGTTT-G-AAAAGTCTTCGA----TTTT--A-TGATA------C-C-A-ATTGGTTGAGAATACCT-TTTA-AACGACT-GAC--AATA--TCAAT-ATAGCCCAATGA-T-TTACTG--TTCCCTGG-AT--TGATCGGTCAAC-AGAGGCAGTTGGATA--G--TAGAA-T-T--GCA--ATGAT---AAG-C-TA-TCAA--GAAAAATACAAT-A--TT--TT---C-TGGATGCCACATGATAAGTG
gi|6 : aagtTCAAGTGTAAT--GAAAA-----GT-CCC--AAATGT-TGAT--A------TAGTTATT--ATG-A-ATTTCAC-CA---AAAAAGGTGTTA--TTTT-T-GAAATTTTCAGA--TTACTT--ACTGATG------TATTA-AGCGTG-GA-AATACCT-TTTTTAAAGT-T-ACC--AGCA-TTCAAT-ATAACCAAC-GATG-CTAC-T--TTCCCT-G-AGTATGAC--GTTATC-AGAAA------GA-A--G--TA-AG-------------GAT---AA-CC-CATT-AA--G-AAAATGGCAT-A--TT--TT---C-TGCATAGCA-ATGA-AAATGA
gi|7 : caatgATGAAAAC-C--TCAAAATT-TGAT--A------TT----TC--GTT-A-AATTCAC-TT----TAAAT-TA-TA-A-TTT-T-GAAA--TTTAGATTTTTTTT--ATTGATA-------AT---AAT-TTTGA-AA----T-CTTT-AAAAA-T-GTA--AATA-TTCAA--ATACTGAACTGA-G-TTA-----TTCCAT-G-ATT-TGAC--GTCGAT-AGAGACC-TT-GATAATG--TA-AAGT-CTGGCA--AGGGT---AAGCTATA-T-AG--G---AATGACAT-AATTT--CT---C-TGGATAGCA-
gi|8 : TCAAGTATAATCTGAAAATAAAAAAACCCTCAAATGT-TGAT--A-------A----TT--GTATATATTTTAC-TT---TAATAA-TAT-A-ATTTT-G-TTAAGTTTCTGA--TTTTTT--A--GA-A------CAT-ATAATGTT-GA-AATACCC-TTT--AAAGA-T-GACCCAATA-TTCAATTATACCTGACTGA-G-TTAC-GGTTTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT--ATA--G--TA-AA-g
gi|9 : tttactactttaggAAG-GTAAT--GAAAATGAAAAC-CCCTCTAAGGT-TGAT--A------TA----TT--GTC-A-ATTTCAC-TT---AAAGAT-TA-TA-ATTTT-TGGAAAGTTTCTGA--TTTTTA--ATTGATA------CAT-A-AATGTTTGA-AATACCT-TTAC-AAAGATT-GAC--AATA-TCCAAT-ATACCCGA-GGA-GAATAC-G--TCCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-GATA--G--TA-AA-T-CAAGTA--ATG
Alignments
lowQualScore : 1111 11 11111
lowQualScore : 66 2 3 3 44 999999 1111 44 44 3 3 6666 44 88 3 777 55 44 4 888888 3 3 2 2 5 8 5 33 2 3 2 2 2 2 33 2 2 33 2 2 2 33 66 2 22222 44 666 3 3 3 55 88 0 3 55 55 666 3 0 3 4
lowQualScore : .. . . . .. ...... .... .. .. . . .... .. .. . ... .. .. . ...... . . . . . . . .. . . . . . . .. . . .. . . . .. .. . ..... .. ... . . . .. .. . . .. .. ... . . . .
lowQualScore : 11 6 3 3 66 666666 7777 66 33 3 1 2222 88 99 3 777 00 66 2 888888 1 1 9 9 7 6 7 99 9 1 4 7 7 7 77 7 7 77 7 9 9 99 88 9 33333 22 444 6 6 6 00 00 5 6 00 00 444 6 4 6 4
consensus : TCAAGTGTAAT--GAAAATGAAAAC-CCCTCAAATGT-TGAT--A------TA----TT--GTN-A-ATTTCAC-TT---AAAAAT-TATTA-ATTTT-T-GAAAGTTTCTGA--TTTTTT--ATTGATA------CAT-A-AATGTTTGA-AATACCT-TTTT-AAAGA-T-GAC--AATA-TTCAAT-ATACCCGACTGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-GATA--G--TA-AA-T-CTAGCA--ATGAT---AAGCC-TA-T-AA--G-AAAATGGCAT-A--TT--TT---C-TGGATAGCA-ATGA-AAGTGAC
Reference ( family-881 ) : TCAAGTGTAAT--GAAAATGAAAAC-CCCTCAAATGT-TGAT--A------TA----TT--GTN-A-ATTTCAC-TT---AAAAAT-TATTA-ATTTT-T-GAAAGTTTCTGA--TTTTTT--ATTGATA------CAT-A-AATGTTTGA-AATACCT-TTTT-AAAGA-T-GAC--AATA-TTCAAT-ATACCCGACTGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-GATA--G--TA-AA-T-CTAGCA--ATGAT---AAGCC-TA-T-AA--G-AAAATGGCAT-A--TT--TT---C-TGGATAGCA-ATGA-AAGTGAC
gi|1 : TCAAGTGTAAT--GAAGATGAAAAA-ACCCCAAATGT-TGAT--A------TA----TC--GTC-A-ATTCTAC-TTTTAAAAAAT-TGT-A-CTTTT-T-GAGAGTTTCTGA--TTTTTT--ACTGATA------CAT-A-AATGTTTGA-AATACCT-TTTT-AAAGATT-GAA--AATA-TTCAAT-ATAACCAACAAG-G-TTAC-G--TTCCGT-A-TTTATTAT--GTCATC-AGAGACA-TT-GCAA--GT-TA-AA-T-A-AGTA--ATGATTTAAAGCC-TT-T-AA--G-AAAATGCCAT-A--TT--TT---C-TGAATAACA-ATG
gi|10 : aaggTCAC-TT---TAAAAT-TAAAA-ATTTT---GAAAGTTTCTGA--TTTTTT--ATTGATA------CAT-A-AATGTTTGA-AATACAT-TTTT-AAAGA-T-GAC--GATA-TTCAAT-GTACCCGACTGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTTATC-AGAGACA-TT-GATA--G--TA-AA-T-CTAGCA--ATGAT---AAGTC-T-----A--G---------AT-A--TT--TC---C-TGAATAGCA-ATAA-AAGTGAC
gi|11 : TTTT--ACTGATA------CAT-A-AATGTTTGA-AATACCT-GTTT-TAAGA-TTGAC--AATA-TCCAAT-ATAACCGACTAG-G-TTAC-G--TTTCCT-G-TTTATGAC--ATCATC-AGACACA-TT-GATA--G--TA-------CAACA--ATGAT---AAACC-TA-C-AA--G-AAAATGACCT-T--TT--TTTGGC-TGGATAACG-ATGA-CGATGA
gi|12 : TGATA------CAT-A-AATGTTGGA-AATACCT-TCCT-AAAGA-T-GAC--AATA-TCAAAT-ATACCCGACGAG-G-TTAC-A--CTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-CATA--G--TA-AA-A-TAAGTA--ATGAT---AAGCC-TA-T-GA--G-AAAATGGCAT-A--TT--TT---C-TGGATAACA-GTGA-AAGTGACaaatgacgg
gi|13 : -CTCCCAAATGT-TGAT--A------TA----TT--GTC-A-ATTTCAC-TT---AGAAAT-TGT------------AAAGTTTGTGA--TTTTTTTTACTGATA------CAT-A-GATGTTTGA-AATACGTGTTTT-AAGAG-T-AAC--AACA-TTCAAT-ATTACCGACGAG-G-TTAC-G--TCCCTT-G-TTTATGAC--ATCATC-A
gi|14 : TACCCGACTGA-G-TTAC-G--TTCCTT-GAATTATGAC--GTCATCAAGAGACA-CT-GATA--GCATA-AA-TCCTAGCA--ATGAT---A---C-TG-T-AACGA-AAAATGGGATAA--TTAATT---CTTGGA-AGTC-GTGA-AAGTGtt
gi|15 : TCAAGTATAAT--GAAAAT-AAAAC-CCCTC-AATGTGTGATTGA------TAAT--TT--GTA-A-ATTTCACGTT---AAAAtacgga
gi|16 : gg--GAAAATAAAAAC-CCCTCAAACG----AT--A------TA----TT--GTC-A-ATTTCAC-TT---TGAATT-TA-TA-ATTTT-T-GAAAt
gi|17 : TGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTCATC-TGAGACA-CT-GATA--G--TA-AA-T-CTAGCA--
gi|18 : GTTTGT-AATACCT-TTCT-AAAGA-T-GAC--GATA-TTCAAt
gi|2 : TCAAGTATAAT--GAAAATGAAAAC-CCCTCAAATGT-TGAT--A------TA----TT--GTA-A-ATTTCAC-TT---AAAATT-T-TTA-ATTTT-T-GAAAGATTCTGA--TTTTTT--ATTGATATTGATACAT-A-CATGTTTGA-AATACCT-TTTTTAAAGA-TCGAC--AATAATTCAAT-ATACCCGACTGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-GATA--G--TA-AA-T-CTAGCA--ATGAT---AAGCC-TA-T-AA--G--AAAT-GCAT-A---------------------A-ATGA-AAGTGAC
gi|3 : taaaggTCAAGTATAAT--GAAAATAAAAAA-CCCTCAAATGT-TGAT--A------TA----TT--GTA-A-ATTTCAC-TT---AAAAAA-TATTA-ATTTT-T-GTAAGTTTCTGA--TTTTTT--ATTGATA------CAT-A-AATGTTTGA-AATACCC-TTTT-AAAGA-C-GAC--AATA-TTCAAT-ATACCCGACTGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-GATA--G--TA-AA-T-CTAGCATTAT-AT---GAGCC-TA-T-AG--G-AAAATGGCAT-A--TT--TT---C-TGGATAGCA-GTAA-AAGTGACgg
gi|4 : TCAAGTGTAAT--GAAAATAAAACC-CCCTCAAATGT-TGAT--ACACATGTA----TT--GTC-A-ATTTCAC-TT---AAAATT-TA--A-ATTTTTT-GAAAGTTTCAAA--TTTTTT--ATTGATA------CAT-A-AATGTTTGA-AATACCT-TTTT-AAAGA-T-GAC--AATA-TTCAAT-ATACCCG----------AC-G--TTTCCT-G-ATTATGAT--GTCATC-AGAGACA-TT-TATG--G--TA-AA-A-CAAGTA--ATGAT---AAGCC-TA-T-GA--G-AAAATTGCAT-A--TT--TT---C-CGGATAACA-ATGT-ACATGAC
gi|5 : gAAAATGAAAAC-TCCTCAAATGT-TGAT---------TA----TTGGGTA-A-A-TTCAC-TT---AAAAG--TATGAGAGTTT-G-AAAAGTCTTCGA----TTTT--A-TGATA------C-C-A-ATTGGTTGAGAATACCT-TTTA-AACGACT-GAC--AATA--TCAAT-ATAGCCCAATGA-T-TTACTG--TTCCCTGG-AT--TGATCGGTCAAC-AGAGGCAGTTGGATA--G--TAGAA-T-T--GCA--ATGAT---AAG-C-TA-TCAA--GAAAAATACAAT-A--TT--TT---C-TGGATGCCACATGATAAGTG
gi|6 : aagtTCAAGTGTAAT--GAAAA-----GT-CCC--AAATGT-TGAT--A------TAGTTATT--ATG-A-ATTTCAC-CA---AAAAAGGTGTTA--TTTT-T-GAAATTTTCAGA--TTACTT--ACTGATG------TATTA-AGCGTG-GA-AATACCT-TTTTTAAAGT-T-ACC--AGCA-TTCAAT-ATAACCAAC-GATG-CTAC-T--TTCCCT-G-AGTATGAC--GTTATC-AGAAA------GA-A--G--TA-AG-------------GAT---AA-CC-CATT-AA--G-AAAATGGCAT-A--TT--TT---C-TGCATAGCA-ATGA-AAATGA
gi|7 : caatgATGAAAAC-C--TCAAAATT-TGAT--A------TT----TC--GTT-A-AATTCAC-TT----TAAAT-TA-TA-A-TTT-T-GAAA--TTTAGATTTTTTTT--ATTGATA-------AT---AAT-TTTGA-AA----T-CTTT-AAAAA-T-GTA--AATA-TTCAA--ATACTGAACTGA-G-TTA-----TTCCAT-G-ATT-TGAC--GTCGAT-AGAGACC-TT-GATAATG--TA-AAGT-CTGGCA--AGGGT---AAGCTATA-T-AG--G---AATGACAT-AATTT--CT---C-TGGATAGCA-
gi|8 : TCAAGTATAATCTGAAAATAAAAAAACCCTCAAATGT-TGAT--A-------A----TT--GTATATATTTTAC-TT---TAATAA-TAT-A-ATTTT-G-TTAAGTTTCTGA--TTTTTT--A--GA-A------CAT-ATAATGTT-GA-AATACCC-TTT--AAAGA-T-GACCCAATA-TTCAATTATACCTGACTGA-G-TTAC-GGTTTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT--ATA--G--TA-AA-g
gi|9 : tttactactttaggAAG-GTAAT--GAAAATGAAAAC-CCCTCTAAGGT-TGAT--A------TA----TT--GTC-A-ATTTCAC-TT---AAAGAT-TA-TA-ATTTT-TGGAAAGTTTCTGA--TTTTTA--ATTGATA------CAT-A-AATGTTTGA-AATACCT-TTAC-AAAGATT-GAC--AATA-TCCAAT-ATACCCGA-GGA-GAATAC-G--TCCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-GATA--G--TA-AA-T-CAAGTA--ATG
blockSeqs : CT A A G TG CACATG GTTA GG AT T G T GG AA G TT TT TT T TTGATA T T G G T C T CC A T T T A T GT G A CG A G G AT CA G TCCT TT . A T C CG AA A AT AA TGG T C T
blockSeqs : . G . . . . AT . C . . A T TT . TG . . C . . . . . T T C . . . T . . . . . . . . . . . . . GTCT . . . . . . A . . . . . . .
blockSeqs : . A . . . . . . A . . A T TT . T . . C . . . . . . . . . . . G . . . . . . . . . . . . . TCT . . . . . . A . . . . . . .
blockSeqs : . A . . . . . . C . . T T TG . T . . T . . . . . . . . . . . G . . . . . . . . . . . . . ATA . . . . . . A . . . . . . .
blockSeqs : . G . . . . . . A . . A T TT . T . . T . . . . . . . . . . . T . . . . . . . . . . . . . TCT . . . . . . A . . . . . . .
blockSeqs : . G . . . . . . A . . A A T . G . . T . . . . . . . . . . . T . . . . . . . . . . . . . TCT . . . . . . A . . . . . . .
blockSeqs : . A . . . . . . C . . A T T . T . . C . . . . . . . . . . . T . . . . . . . . . . . . . TCT . . . . . . A . . . . . . .
blockSeqs : . G . . . . . . A . . A T T . T . . T . . . . . . . . . . . T . . . . . . . . . . . . . ACA . . . . . . . . . . . . . .
blockSeqs : . . . . . . . G . . A A T . G . . T . . . . . . . . . . . T . . . . . . . . . . . . . TCA . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . T T T . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . TT . . . . . . . . . . . . .
blockSeqs : . . . . . . C . . A . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . C .
blockSeqs : . . . . . . . . . . . . . G . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons : A*** ** TCN** ***
originalCons : TCAAGTGTAAT--GAAAATGAAAAC-CCCTCAAATGT-TGAT--A------TA----TT--GTN-A-ATTTCAC-TT---AAAAAT-TATTA-ATTTT-T-GAAAGTTTCTGA--TTTTTT--ATTGATA------CAT-A-AATGTTTGA-AATACCT-TTTT-AAAGA-T-GAC--AATA-TTCAAT-ATACCCGACTGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-GATA--G--TA-AA-T-CTAGCA--ATGAT---AAGCC-TA-T-AA--G-AAAATGGCAT-A--TT--TT---C-TGGATAGCA-ATGA-AAGTGAC
finalCons : TCAAGTGTAAT--GAAAATGAAAAC-CCCTCAAATGT-TGAT--A------TA----TT--GTN-A-ATTTCAC-TTA---AAAAT-TATTA-ATTTT-T-GAAAGTTTCTGA--TTTTTT--ATTGATA------CAT-A-AATGTTTGA-AATACCT-TTTT-AAAGA-T-GAC--AATA-TTCAAT-ATACCCGACTGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-GATA--G--TA-AATCN--AGCA--ATGAT---AAGCC-TA-T-AA--G-AAAATGGCAT-A--TT--TT---C-TGGATAGCA-ATGA-AAGTGAC
Alignments
lowQualScore : 1111 11 11111
lowQualScore : 66 2 3 3 44 999999 1111 44 44 3 3 6666 44 88 3 777 55 44 4 888888 3 3 2 2 5 8 5 33 2 3 2 2 2 2 33 2 2 33 2 2 2 33 66 2 11111 44 666 3 3 3 55 88 0 3 55 55 666 3 0 3 4
lowQualScore : .. . . . .. ...... .... .. .. . . .... .. .. . ... .. .. . ...... . . . . . . . .. . . . . . . .. . . .. . . . .. .. . ..... .. ... . . . .. .. . . .. .. ... . . . .
lowQualScore : 11 6 3 3 66 666666 7777 66 33 3 1 2222 88 99 3 777 00 66 2 888888 1 1 9 9 7 6 7 99 9 1 4 7 7 7 77 7 7 77 7 9 9 99 88 9 88888 22 444 6 6 6 00 00 5 6 00 00 444 6 4 6 4
consensus : TCAAGTGTAAT--GAAAATGAAAAC-CCCTCAAATGT-TGAT--A------TA----TT--GTN-A-ATTTCAC-TT---AAAAAT-TATTA-ATTTT-T-GAAAGTTTCTGA--TTTTTT--ATTGATA------CAT-A-AATGTTTGA-AATACCT-TTTT-AAAGA-T-GAC--AATA-TTCAAT-ATACCCGACTGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-GATA--G--TA-AA-T-CNAGCA--ATGAT---AAGCC-TA-T-AA--G-AAAATGGCAT-A--TT--TT---C-TGGATAGCA-ATGA-AAGTGAC
Reference ( family-881 ) : TCAAGTGTAAT--GAAAATGAAAAC-CCCTCAAATGT-TGAT--A------TA----TT--GTN-A-ATTTCAC-TT---AAAAAT-TATTA-ATTTT-T-GAAAGTTTCTGA--TTTTTT--ATTGATA------CAT-A-AATGTTTGA-AATACCT-TTTT-AAAGA-T-GAC--AATA-TTCAAT-ATACCCGACTGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-GATA--G--TA-AA-T-CNAGCA--ATGAT---AAGCC-TA-T-AA--G-AAAATGGCAT-A--TT--TT---C-TGGATAGCA-ATGA-AAGTGAC
gi|1 : TCAAGTGTAAT--GAAGATGAAAAA-ACCCCAAATGT-TGAT--A------TA----TC--GTC-A-ATTCTAC-TTTTAAAAAAT-TGT-A-CTTTT-T-GAGAGTTTCTGA--TTTTTT--ACTGATA------CAT-A-AATGTTTGA-AATACCT-TTTT-AAAGATT-GAA--AATA-TTCAAT-ATAACCAACAAG-G-TTAC-G--TTCCGT-A-TTTATTAT--GTCATC-AGAGACA-TT-GCAA--GT-TA-AA-T--AAGTA--ATGATTTAAAGCC-TT-T-AA--G-AAAATGCCAT-A--TT--TT---C-TGAATAACA-ATG
gi|10 : aaggTCAC-TT---TAAAAT-TAAAA-ATTTT---GAAAGTTTCTGA--TTTTTT--ATTGATA------CAT-A-AATGTTTGA-AATACAT-TTTT-AAAGA-T-GAC--GATA-TTCAAT-GTACCCGACTGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTTATC-AGAGACA-TT-GATA--G--TA-AA-T-CTAGCA--ATGAT---AAGTC-T-----A--G---------AT-A--TT--TC---C-TGAATAGCA-ATAA-AAGTGAC
gi|11 : TTTT--ACTGATA------CAT-A-AATGTTTGA-AATACCT-GTTT-TAAGA-TTGAC--AATA-TCCAAT-ATAACCGACTAG-G-TTAC-G--TTTCCT-G-TTTATGAC--ATCATC-AGACACA-TT-GATA--G--TA-------CAACA--ATGAT---AAACC-TA-C-AA--G-AAAATGACCT-T--TT--TTTGGC-TGGATAACG-ATGA-CGATGA
gi|12 : TGATA------CAT-A-AATGTTGGA-AATACCT-TCCT-AAAGA-T-GAC--AATA-TCAAAT-ATACCCGACGAG-G-TTAC-A--CTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-CATA--G--TA-AA-A-TAAGTA--ATGAT---AAGCC-TA-T-GA--G-AAAATGGCAT-A--TT--TT---C-TGGATAACA-GTGA-AAGTGACaaatgacgg
gi|13 : -CTCCCAAATGT-TGAT--A------TA----TT--GTC-A-ATTTCAC-TT---AGAAAT-TGT------------AAAGTTTGTGA--TTTTTTTTACTGATA------CAT-A-GATGTTTGA-AATACGTGTTTT-AAGAG-T-AAC--AACA-TTCAAT-ATTACCGACGAG-G-TTAC-G--TCCCTT-G-TTTATGAC--ATCATC-A
gi|14 : TACCCGACTGA-G-TTAC-G--TTCCTT-GAATTATGAC--GTCATCAAGAGACA-CT-GATA--GCATA-AA-TCCTAGCA--ATGAT---A---C-TG-T-AACGA-AAAATGGGATAA--TTAATT---CTTGGA-AGTC-GTGA-AAGTGtt
gi|15 : TCAAGTATAAT--GAAAAT-AAAAC-CCCTC-AATGTGTGATTGA------TAAT--TT--GTA-A-ATTTCACGTT---AAAAtacgga
gi|16 : gg--GAAAATAAAAAC-CCCTCAAACG----AT--A------TA----TT--GTC-A-ATTTCAC-TT---TGAATT-TA-TA-ATTTT-T-GAAAt
gi|17 : TGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTCATC-TGAGACA-CT-GATA--G--TA-AA-T-CTAGCA--
gi|18 : GTTTGT-AATACCT-TTCT-AAAGA-T-GAC--GATA-TTCAAt
gi|2 : TCAAGTATAAT--GAAAATGAAAAC-CCCTCAAATGT-TGAT--A------TA----TT--GTA-A-ATTTCAC-TT---AAAATT-T-TTA-ATTTT-T-GAAAGATTCTGA--TTTTTT--ATTGATATTGATACAT-A-CATGTTTGA-AATACCT-TTTTTAAAGA-TCGAC--AATAATTCAAT-ATACCCGACTGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-GATA--G--TA-AA-T-CTAGCA--ATGAT---AAGCC-TA-T-AA--G--AAAT-GCAT-A---------------------A-ATGA-AAGTGAC
gi|3 : taaaggTCAAGTATAAT--GAAAATAAAAAA-CCCTCAAATGT-TGAT--A------TA----TT--GTA-A-ATTTCAC-TT---AAAAAA-TATTA-ATTTT-T-GTAAGTTTCTGA--TTTTTT--ATTGATA------CAT-A-AATGTTTGA-AATACCC-TTTT-AAAGA-C-GAC--AATA-TTCAAT-ATACCCGACTGA-G-TTAC-G--TTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-GATA--G--TA-AA-T-CTAGCATTAT-AT---GAGCC-TA-T-AG--G-AAAATGGCAT-A--TT--TT---C-TGGATAGCA-GTAA-AAGTGACgg
gi|4 : TCAAGTGTAAT--GAAAATAAAACC-CCCTCAAATGT-TGAT--ACACATGTA----TT--GTC-A-ATTTCAC-TT---AAAATT-TA--A-ATTTTTT-GAAAGTTTCAAA--TTTTTT--ATTGATA------CAT-A-AATGTTTGA-AATACCT-TTTT-AAAGA-T-GAC--AATA-TTCAAT-ATACCCG----------AC-G--TTTCCT-G-ATTATGAT--GTCATC-AGAGACA-TT-TATG--G--TA-AA-A-CAAGTA--ATGAT---AAGCC-TA-T-GA--G-AAAATTGCAT-A--TT--TT---C-CGGATAACA-ATGT-ACATGAC
gi|5 : gAAAATGAAAAC-TCCTCAAATGT-TGAT---------TA----TTGGGTA-A-A-TTCAC-TT---AAAAG--TATGAGAGTTT-G-AAAAGTCTTCGA----TTTT--A-TGATA------C-C-A-ATTGGTTGAGAATACCT-TTTA-AACGACT-GAC--AATA--TCAAT-ATAGCCCAATGA-T-TTACTG--TTCCCTGG-AT--TGATCGGTCAAC-AGAGGCAGTTGGATA--G--TAGAA-T-T--GCA--ATGAT---AAG-C-TA-TCAA--GAAAAATACAAT-A--TT--TT---C-TGGATGCCACATGATAAGTG
gi|6 : aagtTCAAGTGTAAT--GAAAA-----GT-CCC--AAATGT-TGAT--A------TAGTTATT--ATG-A-ATTTCAC-CA---AAAAAGGTGTTA--TTTT-T-GAAATTTTCAGA--TTACTT--ACTGATG------TATTA-AGCGTG-GA-AATACCT-TTTTTAAAGT-T-ACC--AGCA-TTCAAT-ATAACCAAC-GATG-CTAC-T--TTCCCT-G-AGTATGAC--GTTATC-AGAAA------GA-A--G--TA-AG-------------GAT---AA-CC-CATT-AA--G-AAAATGGCAT-A--TT--TT---C-TGCATAGCA-ATGA-AAATGA
gi|7 : caatgATGAAAAC-C--TCAAAATT-TGAT--A------TT----TC--GTT-A-AATTCAC-TT----TAAAT-TA-TA-A-TTT-T-GAAA--TTTAGATTTTTTTT--ATTGATA-------AT---AAT-TTTGA-AA----T-CTTT-AAAAA-T-GTA--AATA-TTCAA--ATACTGAACTGA-G-TTA-----TTCCAT-G-ATT-TGAC--GTCGAT-AGAGACC-TT-GATAATG--TA-AAGT-CTGGCA--AGGGT---AAGCTATA-T-AG--G---AATGACAT-AATTT--CT---C-TGGATAGCA-
gi|8 : TCAAGTATAATCTGAAAATAAAAAAACCCTCAAATGT-TGAT--A-------A----TT--GTATATATTTTAC-TT---TAATAA-TAT-A-ATTTT-G-TTAAGTTTCTGA--TTTTTT--A--GA-A------CAT-ATAATGTT-GA-AATACCC-TTT--AAAGA-T-GACCCAATA-TTCAATTATACCTGACTGA-G-TTAC-GGTTTCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT--ATA--G--TA-AA-g
gi|9 : tttactactttaggAAG-GTAAT--GAAAATGAAAAC-CCCTCTAAGGT-TGAT--A------TA----TT--GTC-A-ATTTCAC-TT---AAAGAT-TA-TA-ATTTT-TGGAAAGTTTCTGA--TTTTTA--ATTGATA------CAT-A-AATGTTTGA-AATACCT-TTAC-AAAGATT-GAC--AATA-TCCAAT-ATACCCGA-GGA-GAATAC-G--TCCCCT-G-ATTATGAC--GTCATC-AGAGACA-TT-GATA--G--TA-AA-T-CAAGTA--ATG