lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 111 1 33 1 2 1 1 1111 333333333333333 2222 11 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111 1111 1 3333333 22222222 11 1111 11111111 777777777777777777777 333333333333333333 111111 44444444444444444444444444444 1
lowQualScore : 5 5 5 555 4 4 5 4 8 4 777 2 4 6 4 66 9 5 0 4 1 4 66 4 5 8888 99999999999 4 55 9 3 4 7 4 7 4 55 4 4444 99 88 222222222222222 666 666 4 5 4 4 99 5 0000 2 5 66 5 0 2 3 6 0 66 5 66 8 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111 5 1 0000 88 4 1 9999 6 4 0000000 777 9 5 77 9 66666666 5 6 8 4 44 4 55 0 3 22 2 66 3 1 8888 4 66666666 777777777777777777777 4 55 66 5 222222222222222222 4 222222 5 2 4 5 55555555555555555555555555555 777 3 5 2 7
lowQualScore : . . . ... . . . . . . ... . . . . .. . . . . . . .. . . .... ........... . .. . . . . . . . .. . .... .. .. ............... ... ... . . . . .. . .... . . .. . . . . . . .. . .. . ....................................................................................................................................................... ..... . . .... .. . . .... . . ....... ... . . .. . ........ . . . . .. . .. . . .. . .. . . .... . ........ ..................... . .. .. . .................. . ...... . . . . ............................. ... . . . .
lowQualScore : 7 0 0 666 4 4 6 4 6 4 888 9 4 0 4 99 0 0 8 0 0 0 11 4 3 5555 66666666666 4 55 0 2 0 0 4 0 3 33 0 0000 55 66 666666666666666 444 444 0 6 0 0 66 5 1111 0 8 11 0 4 5 4 2 4 99 0 66 9 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 99999 7 7 0000 33 4 9 4444 0 8 3333333 888 0 0 00 0 55555555 0 0 9 4 66 4 33 9 9 00 0 11 9 1 9999 4 11111111 888888888888888888888 4 55 99 0 888888888888888888 3 888888 3 2 4 2 33333333333333333333333333333 222 2 0 4 4
consensus : TTGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCCA-TTACTAAATGTTGTA-GTCGT---CGANTTCTCGTTAG-GATTATTGTATTCTT-GGATGCAAACCACAGAAAACGGGCTCGTAGCTCTGATGCTGCTG-ATAACAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-GAATTAAG----TG----GA-A---ATTTGGGTAATAAAAATTC--CAAATCCGCAGCTTTGAGTCCAAA-CAGGTCGTG-TAATAGGCAACATA-CACAT----TTTT--GGTC--TT---A-----------T---AC---TATTGC-GGCAAGG-ACAAAA-TC-GTTGGTTTTGTTTACATTCTG---GATAGCCATA--ACAGTCATCA-GGCAANGTTGCATCCCGGTACATTCC--ATTGCGACAGAG-CATGGTGTGAA-CC-CCAGCAGC----------------------AC-----------ATCC----------------------A-TTTATA------------------C-CA-AACAGGA----A----------C---------------T------T-------------TTTTTACAC-AAACCTGGAGTAA-CANGTGGGAAATGAC-AT-CCATTCACTAA----TAACATTTGGAGT---G---AATAACGTGGAAGCAGATG-CCCCGGTATCTCCT-ATGTA-CG-ATCTCATGTC-ACA-GTCCTCAGCTTGT-ATG-AACA-GAAAGCGCTGACAATTTCCTCCCTGGACCA--GTTTTGGAATCTCCTGACCTTGACA----ACAGACAAACCTGCTT-CACAA--------AAC----CAAC--A----A---G-ATG-T--TTTCAATCAG--CATG-TCCTCAG------------------AGCAAGGTACC------AGACCAGCATCTGGTGGCAAAGTC-ACATC-A-C-A-G-C-------------------CTGGCAACAAAT--GGTATTTGTC-AGGTCAGTTTAATACAAAGAATCAAGCTCCAGTGGAAG
Reference ( gi|5 ) : TTGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCTA-TTACTAAATCTTGTA-GTCGT---CGACTTCTCGTTAG-GATTGTTGTATTCTT-GGATGCAAACCACAGATCACGGGTTCGTATCTCTGATGCTGCTG-ATATCAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-GAATTGAG----TG----GA-A---ATTTGGGTAATTAAAATTC--CAAATTCGCAGCTTTGAGTCCAAA-CTGGTCGTG-TAGTAAGCGACATA-CACAT----TTTT--GGTC--TT---G-----------T---AC---TATTGC-GGTAAGG-ACAAAA-TT-GCTGGTTTTGTTTACATTCTG---TATAACTATA--ACAGTCATTA-GGCAAGGTTGCATCCCGGTACATTTC--ATTGCGACAGAG-CATGGTGTGAA-TC-CCAGCAGC----------------------GC-----------AT------------------------A-TTTATG------------------C-CA-AACAGGA----A----------C---------------T------T-------------TTCTCATAC-AAACCTAGAGTAA-CAAGTGGGAAATGAC-AT-CCATTCACTAA----TAGCATTTGTAGT---G---AATAATGTGGAGGCAGATA-CCCCGGTATATCCA-ATGGA-CG-ATCCCATGTC-ACA-GTCCTCAGCTTGT-ATG-AACA-GAAAGCGCTGACAATTTCCTCCCTGAACCA--GTTTTGGAATTTCCTAACCTTGACA----ACAGACAAACCTGCTT-CACAA--------AAC----TAAC-------A---T-ATG-T--TTTCAATCAG--CATG-TCCTCAG------------------AGCAAGGTATC------AGACTAACATCTGGTGGCAAAGTC-ACGTC-A-C-A-G-C-------------------CTGGCAACAAAT--AGTATTTGTC-AGGTCAGTTTAATACAAAGATTCAAACTCCAGTGGAAG
gi|3 : TTGTTGCACCAGAAATTACTCCTA-AATAAATGTATTCCCA-TTACTAA--TTTGTATGTCGTTTCCGACTTCTCGT
gi|18 : ttcTTGTTG-ACCA--AAT-A-TC----AA-ACCGGTAT-CCCAATTACTAAGT--TGTA-GTC-T---CGACTTCTCGTTAGTGATTaacgcggtttcgtagctctgagctgctgatacaacacattttgttgtatttataagctaaggtccagatcaagaattgagaggttgaaaccgatttggaataaagattcttcaaatcgcagcttaagtccaaagcaggtcgtgtgataaggaaagatcagatcttttgggtctttacactattgcgcaacggacaaaaattgtggttttgtttgcattctgggattaactataagacagtcattagggcaaggtgaaatcccggtacatccttgcgacagagcatggtgtgaaacccaggcccacaatcacttaaggattctgaacagtcagcacaatcgcacttatcagatgatgaccagcaacagtaattataccaacagaactattggattttttacacaaacctacagtaactagtggaaaataaccataccattcacataactttggaagtgaataatttggaagcagattccccggtgtctccctatgtagcgatatctgtcacgtccttgtatgtatgaaacaaaaggctgacattcctcctgaaccattgttttggaactcctaaactgacaaacctgcttccagaacaccaacagaatgttattttaatcagcaagttccgcagagcaagcaccagaagcacattggtggcaaagtcacatctacaatcctggcaacaaactaagtattgtcaggtcagtttaatacaagaatctaagcctcagtggaagtc
gi|1 : TGCTG-ACCAGAAAT-A-T-----AA-AAAAGTAG-CCAA-TTACTAAATGTTGTA-GCCGT---CGAGTTCTCTTTAG-GATTATTGTATTCTT-TGATGCAAACCACAGTAAACGGGATCGTAGTTCTCATGCTGCTG-ATAACAAC-CATTTTGTTTCATTTATAAGGTAG--CCCATATCG-GAATTAAG----TG----GA-G---ATTTGGGTAATAGAAATTC--TAAATCTGCAGATTTGAGTCCAAA-TAGGTCGCG-TATTAGACAACATA-CACAT----TTGT--GGTCAGTT---GTGGTCTTATCAT---AC---TATTGC-GACAAGG-ACAAAA-TC-GCTGGTTTTGTTTACATTCTG---GATAGCCATA--ACAGTCATCA-GGCAACGTCACATCCCATTACATTCC--ATTGCAACAGAG-CAGGGTGCGAACCC-CCAGCAGC----------------------AC-----------ATCCACTTACTAGACAAGACAGCACAG-TTTATA------------------C-CA-AACAGGA----A----------C---------------TTGC---T-------------TTTTTGCAC-AAACCCGGAGTAA-CACGTGGGAAATTAC-AT-CCATTCACTAA----TAACATTTGAAGTACAG---ACTAATGTGGACGCAGATG-CCCTGGTATATACT-ATGTA-CG-ATCTCATGTC-ACA-GTCCTCAGCTTGT-ATG-AACA-GAAAACGCTGACAATTTCTTCTCTGAAGCA--ATTTTGAAATCCCCTGACCTTGACA----ACAGACAAACCTGCTT-CTCAA--------CAC----CAACAGA----A---G-ATG-T--TTTCAATCAGAACAAG-GTATCAGACCAGCATCTGGTGGAAAAACAAGGTATC------AGACCATCATCTGCTGGAAAAGTC-AAATC-A-CGA-G-T-------------------CTGGCTACAAAT--GGTATTTGTC-AGGTCAGTTAAATACAACGAATCaaatttcagtatggcgtcgtgacgacgcaccac
gi|8 : TGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCCA-TTGCTAAATGTTGTA-GTCGT---CTATTTCTCGTTAG-GAATATTGTATTCTT-GGATGCAAACCACAGAAAACGGGCTCGTAGCTCTGATGCTGCTA-A---CAAC-CATTTGGTTTCATTTtagc
gi|13 : TGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCCA-TTACTAAATGTTGTA-GCCGG---CGACTTCCCCTTAG-GAATATTGTTTTCTT-GGATGCAAACCACAGGGAACGGGCTCGTAGTTCTCATGCTGCTG-ATAACAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-G------------------------ATTTGGGTAACACAAATTC--CAAATCCGCAGATTTGAGTCCAAA-CAGGTCGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattaagtggaaatttgagtattaaattacaaatccccagctctgagtccaaacaggtcgtgtaataggcaacattcacatttttggtcttatactattgcggcaaggacaaaatcgttggttttgtttacattctggacaactataacagtcattaggcaaggttgcatcccagtacattccattgcgacagagcatggtgttaaccccagcagcacatcc
gi|16 : cTGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCCA-TTACTGAATGTTGTA-GTCGT---CGACTTCTTGTTAA-GATTATTGTATTCTT-GAATACAAACCACAAA--AAGGGCTCGTAGCTCTGATGCTGCTG-ATAACAAC-CATTTTGTTTAATTTACAATGTAA--CCCATATCG-GAATTAAG----
gi|7 : GTTG-ACCAGAATT-A-TCC---AA-AAAGGTAT-CCCA-TTACTAAAT---GTA-GTTGT---AGAGTTCTCGATAG-GATTATTGTATTCTT-GGATGCAAACCACAAA--ACGGGCTCGTAGCTCTGATGTTGCTG-ATAGCAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-AAATTAAG----TG----GA-G---ATTTGGGTAATAAAAAATC--GAAATCC-CAGATTTGAGTCCAAA-CAGGTCGTG-TAATAGGCAACATA-CACAT----TTTT--GGTG--TT---T-----------T---AC---CATTGC-GGCAAGG-ACAAAA-TC-GTT-GTTTTGTTTACATTCTG---GA---------------CATTA-GGCAAGGTTG-ATCCCGGT-CA-TTC--ATTGCAACAGAATCATGGTGTGAA--C-CCAGCAGCACACCCATTATCAGATGTGACAGC-----------AC------------------------ATTTTATA------------------CGCA-TACAGGA----AACTTGTTGGTT---------------T------T-------------TTTTTACAC-AAACCTGGAGTAA-------------------------CACTGA----TAACATTTGGAGT---G---AATAATGTGGAAGCAGga
gi|2 : CAGAAAT-A-TCCCAAAA-AAAGATAT-CCTA-TT-CTAAATATTGTA-GTTGT---TGAGTTCTCATTAG-GATTATTGTATTCCT-G-ATGCAAACCACAGAAAACGGGCTCGTAGCTCTCATGCTGCTGAATA-AAAC-CATTTTCTTTATTTTATAAGTTAA--CCCAGATCG-GAATTAAG----TG----AA-G---ACT--GGTAATAAAAATTA--CACATTCACAGCTTTGAGTCCAAA-CAGGTCGTGTTAATAGGCAACATA-CACAT----TTTCA-AATCT-TT---A-----------T---AC---TTATGCGGGCAAGG-ACAAAA-TC-GTTGGCTTTGTTT-TATTCTG---GATAGC-ATA--ACAGTCATCA-GGC-ACGTTGCATCCCGGTACAGTTCCAATTGCGACAGAA-CATGGTGTGAA-CCTCCAGCAGC----------------------ACATCGACTTACTAT------------------------A-TATATGTGACAGCAACAGTTTATAC-CA-AACAGGA----A----------CTTGATTTGGTTTGTTT------T-------------TTTTTACAC-AAATCTGGAGTAA-CATGTGGGAAATAA--AT-TCATTCACAAATATGTAACATTTGGAGTTCAA---AATAATGTGGAAGCAGATG-CCCCGGCATCTCCT-ATTTA-CGAATCTAATGTC-ACACGTCCTCGCCTTGTAATA-AACATAAAAGCGCTGACAATTTCATCCCTGGACCA--GTTTTGGAATCTCATGACCTTGACA----ACAGACAAACCTGCTT-CACAA--------AAC----CAACAG-----A---G-ACGTT--TTTCTATCAA--AATA-TCCCTAG------------------AGC-AGGCACC------AGACCAGCATCTGGTGGCAAAGTCGATCTC-A---A-G-T-------------------CTGGCAACAAAT--GATATTTGTCAAGGTCAGTTTAACACAAAGAAT-AAGCTACGGTGGAAG
gi|4 : -AAAGGTAT-CCCA-TTACTAAATTTTGTA-GTCAT---TGAGTTCTCGCTTT-GATTATTGTAGTCTTTGGATGAAAATCGCTGTAAACGGA---------CTAA-GCTGCTG-ATAGCAAC-CATTATGTTTAGTTCATAAGCTAA--TCCAGATTG-GAATGAAG----TGCAAGGA-A---ATCTGGGTGGTAAAAAT-C--CAAATAGGCAGCTTTGAGTCCAGA-TAGATCGTG-TAATAGGGAGCATA-CACATAT--TTTT--GGTC--TTATCA-----------T---AC---TATT----GTAAAG-ACAAAA-TC-GATGGTTTTGTTTACATGCTG---GATGGCCATA--ACAGTCAACA-GGCTACGTTATATCCCGGTACATTCC--ATTGCGACAGAT-CATGGTGTGAA-CC-CCAGCAGC----------------------AC-----------ATCC----------------------A-CTTA--------------------C-CAGGATATGACAGCA----------C---------------A------T-------------TTGACA-ACAAAACCTGTAGTAA-CATGTGGGGAATGAC-AT-TCATTCTCCAA----TGACATTTGGGGTTTCG---AATAACGTGGAAGAAGATGTCCCC--TACAT--------A-TG-ATCTCAATTC-ACA-GTCCTCAGCTTGT-ATG-AAAA-GAAAGGGAGGACATTATCCTCCCTGGACCA--GTTTTGGTATATCCTAAATTTGACA----ACTGACAAACCCGCTT-CACAACATTTTGTAAC----CAAT-------A---G-CTG-T--TTTCAATCAG--CATG-TCTTTAG------------------AGCAAGGTACCAGATCTAGACCAGCGTCTGGTAGCAAAGTA-ACATC-GCC-A-G-TATGAACTTAGGTGATCTTGTTGGCAAAGAAT--GGTA--TGTC-AGATCAGTTAATTACAAAGAATCAATCTCCAGTtcc
gi|12 : TAG-GATTATTGTATTCTT-GGATGCAAACCATAGA-AACGGGCTCGTAGGTCTGATGCTGCTA-ATAACAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-GAATTAAG----TG----GG-A---ATTTGGGTAATAAAAATTC--CAAATCCGCAGCTTTGAGTCCAAA-CAGGCTGTG-CAATAGGCAACATA-CAAAT----TTTT--GGTC--TT---A-----------T---AC---TATTGC-GACAAGG-ATAAAA-TA-GTTGGTTTTGTTTACATT
gi|10 : TTGTAATCTT-GAATGCAAACCACAGAAAACGTGCTCGTAGCTCTGATGATGCTG-ATAACAAC-CATTTTGTTTAATTCATAAGGTAA--CCCAGATCG-GAATTAAG----TG----GAGA---ATTTGGGTAATAAAAATTC--CAAATCCTCAGCTTTGAGTCCAAA-CAGGTCGTG-TGATAGGCAACATA-CACAG----TTTT--GGTC--TT---A-----------T---TC---TATTAC-GGCAAGG-ACAAAA-TC-GTTGGTTTTGTTTTCATTCTG---GATAACTGTA--ACAGTCATTA-GGCAAGGTTGTATCCCGGTACATTCC--ATTGCGACAGAG-CATGGTGTGAA-CC-TCAGCAGC----------------------AC-----------ATCC----------------------A-TTTA--------------------C-CA-GA
gi|3 : CGCGGTTTCGTAGCTCTGA-GCTGCTG-ATA-CAACACATTTTGTTGTATTTATAAGCTAAGGTCCAGATCAAGAATTGAGAGGTTG----AA-ACCGATTTGG--AATAAAGATTCTTCAAAT-CGCAGCTT-AAGTCCAAAGCAGGTCGTG-TGATAAG-GAAAGATCAGAT----CTTTTGGGTC--TTT--A-----------C---AC---TATTGC-GCAACGG-ACAAAAATT-G-TGGTTTTGTTTGCATTCTGGGAT-TAACTATAAGACAGTCATTAGGGCAAGGTGAAATCCCGGTACA--TC--CTTGCGACAGAG-CATGGTGTGAA-AC-CCAGtgtgacgtacagcgcagt
gi|8 : ttcttgttgcaccagaaattactcctaaataaatgtattcccattactaatttgtatgtcgtttccgacttctcgtaaAATTAAG----TG----GA-A---ATTTGAGTA-TTAAA-TTA--CAAATCCCCAGCTCTGAGTCCAAA-CAGGTCGTG-TAATAGGCAACATT-CACAT----TTTT--GGTC--TT---A-----------T---AC---TATTGC-GGCAAGG-ACAAAA-TC-GTTGGTTTTGTTTACATTCTG---GACAACTATA--ACAGTCATTA-GGCAAGGTTGCATCCCAGTACATTCC--ATTGCGACAGAG-CATGGTGTTAA-CC-CCAGCAGC----------------------AC-----------AT------------------------gcccacaatcacttaaggattctgaacagtcagcacaatcgcacttatcagatgatgaccagcaacagtaattataccaacagaactattggattttttacacaaacctacagtaactagtggaaaataaccataccattcacataactttggaagtgaataatttggaagcagattccccggtgtctccctatgtagcgatatctgtcacgtccttgtatgtatgaaacaaaaggctgacattcctcctgaaccattgttttggaactcctaaactgacaaacctgcttccagaacaccaacagaatgttattttaatcagcaagttccgcagagcaagcaccagaagcacattggtggcaaagtcacatctacaatcctggcaacaaactaagtattgtcaggtcagtttaatacaagaatctaagcctcagtggaagtc
gi|19 : tgttgaccagaaatatccaaaaaggtatcccattgctaaatgttgtagtcgtctatttctcgttaggaatattgtattcttggatgcaaaccacagaaaacgggctcgtagctctgatgctgctaacaaccatttggtttcatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA-A---ATTTAG-TAAGAAAGAATT--CAGGTCAACAGCTCTGGGTCGAGG-TAGATCAGG-TAACAGGAAACAAA-CATATATTTTTTT--GGCC--TA---A-----------T---ACAGGTATTGcc
gi|6 : ATA-CACAT----TTGT--GGTG--TT---A-----------TCATAC---TATTGC-GGCAAGG-ACAAAA-TC-GCCGGCTTTGTTTACATTCTG---GATAGCCATA--ACAGTCATCT-GGGAACGTTACATCCCGTTACATTCC--ATTGCTACAGAG-CATGGTGTGAA-CCTCCAGCAGCACACCCCTTACCAGACGTGACAGC-----------AC------------------------AGTTTATA------------------C-CA-AACAGGA----A----------C---------------T------TGT-----------TTTTTGCAC-AAACCTGGA-TAATCATGTGGGAAATGAC-AC-CCATTCACTAA----TAACATTTGGGGT---GCAGAATAATGTGGAAACAGATA-CCCCGGTCTCTCCT-ATGTA-CG-ATCTCATGTC-ACA-GTCCTCAGTTTGC-ATG-AACA-GAAAACGCTGACAATTTCCTTCCTGAATCA--GTCTTGGAATCTCCTGACCTTGATA----ACAGACAAACCTGCTT-CACAA--------AAC----CAACAGA----A---G-ATA-T--TTTCAACCAG--AATG-TCACCAG------------------AACAAGGCACC------AGACCAGTATATGGTAGC-TAGTC-ACATC-A-CAA-G-C-------------------CTGGCAACAAAT--GGTATTTGTC-AGGTCAGTTTAACACAAAGACTCACGTTCCAGTGG
gi|20 : gtC--TC---A-----------T---AC---TATTGC-GGCAAGGGACAAAA-TCAGCCGGCTTTGTTTACATTCTG---GATAGCCAT---ACAGTCA
gi|3 : -CCAGCAAC----------------------A------------GT------------------------A-ATTATA------------------C-CA-A-CAG-A----A----------C---------------TATTGGAT-------------TTTTTACAC-AAACCTACAGTAA-CTAGTGGAAAATAACCATACCATTCAC--A----TAACTTTGGAAGT---G---AATAATTTGGAAGCAGATT-CCCCGGTGTCTCCCTATGTAGCG-ATATC-TGTC-AC--GTCCTT-GTATGT-ATGAAACA--AAAG-GCTGACA--TTCCT-CCTGAACCATTGTTTTGGAA-CTCCTAAACT------------GACAAACCTGCTTCCAGAA--------CAC----CAAC-------A---GAATG-TTATTTTAATCAG--CAAGTTCCGCAG------------------AGCAA-GCACC------AGAAGCACAT-TGGTGGCAAAGTC-ACATCTA-C-A-ATC-------------------CTGGCAACAAACTAAGTA-TTGTC-AGGTCAGTTTAATACAAGAATCTAAGCCTCAGTGGAAG
gi|9 : ttcttgttgcaccagaaattactcctaaataaatgtattcccattactaatttgtatgtcgtttccgacttctcgtaacgcggtttcgtagctctgagctgctgatacaacacattttgttgtatttataagctaaggtccagatcaagaattgagaggttgaaaccgatttggaataaagattcttcaaatcgcagcttaagtccaaagcaggtcgtgtgataaggaaagatcagatcttttgggtctttacactattgcgcaacggacaaaaattgtggttttgtttgcattctgggattaactataagacagtcattagggcaaggtgaaatcccggtacatccttgcgacagagcatggtgtgaaacccaggcccacaatcacttaaggattctgaacagtcagcacaatcgcacttatcagatgatgaTTATA------------------C-CA-AACAGGA----A----------C---------------T------TGTTGGTTTTTTTTTTTTTACAC-AAACCTAGAGTAA-CAAGTGGGAAATGAC-AT-CCATTCACTAA----TAACATTTGGAGT---G---AATAATATGGAAGTAGATA-CCCCGGTATCTCCA-ATGTA-CG-ATCTCATGTC-ACA-GTCCTCAGCTTGT-ATG-AACA-AAAAGCGCTGACAA-TTCCTCCCTGGACCA--GTTTTGGAATCTCCTAA-CTTGATA----ACAAA-AAACCTGCTT-CACAA--------AAC-----A----------------------TTTCAATTAG--CATG-TCCTCAG------------------AGCAAGGTACC------AGACTAACATCTGGTAGCAAAGTC-ACGTC-A-CAA-G-C-------------------CTGGCAACAAAT--AGTATTTGTC-AGGTTAGTTTGATACAAAGAATCAAGCGCCAGTGGAAGtc
gi|14 : GTGGGGGATGGA-AT-CCATTCAC-AA----TAAC------------G---AATGACGTGAACACAGATA-CAT--GTATCTCTT-TTGTT-CG-ATCTCATGTCCACA-GTCCACAGCTTGA-ATG-AAAA-GAAAACGATGGCA-TTTTCTCCCTGGACCA--GGTTTGATATTTCCTAACCTTGACAATGTACAGACAAA-CTGCTT-CACAG--------AATTTTGTAACCTACAGAA---G-ATG-T--TTTCAATCtc
gi|15 : aatGTGGGGGATGGA-AT-CCATTCAC-AA----TAAC------------G---AATGACGTGAACACAGATA-CAT--GTATCTCTT-TTGTT-CG-ATCTCATGTCCACA-GTCCACAGCTTGA-ATG-AAAA-GAAA-CA-TGGCA--TTTCTCCCTGGACCA--GGTTTGATATTTCCTAACCTTGACAATGTACAGACAAAC--GCTT-CACAG--------AATTTTGTAACCTACAGAA---G-ATG-T--TTTCAATC
gi|11 : aatATGCC-ACA-GTCCTCAGCTTTC-ATG-AACA-AAAAGCGATGTCAATTTCCTCCAT---------TTTTGGAATCTCCCGACCTTGACA----ACAGACAAACCTGCTT-CACAA--------AAC----CAAC-------AGAAC-ATG-T--TT-CAATCGA--AATG-TCCTCAG------------------AGCAAGGTACC------AGACCAGCATCTGGTAGCAAAATT-ACATC-A-C-AAG-C-------------------CCGACAACAAAT--GGTATTTGAC-AGTTCAGTTTAATACAAAGAGTCAAGCTCCAGTGGAAG
gi|17 : --TTTCAATCAG--CATG-TCCTCAG------------------AGCAAGGTACT------AGACCAACATC--------AAATA-ACA-------A-G-C-------------------CTGGCAACAAAT--AGTATTTGTC-AGGTCAGTTTAATACAAAGAATCAAGCTCCAATGGA
gi|21 : TCAG------------------AGCAAGGTACC------AAACCAGCATCTGTTGGCAAAGTC-ATATC-G-C-cgtcc
gi|22 : tcgccagtctgTTGAATACAAAGAGTCAAGCTCCAGTGGAAGcagt
Alignments
lowQualScore : 111 1111 2222222222222 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 222 1111 44444444 2222 111111 11111 7777777777777777777777777777777777777777777777777
lowQualScore : 5 4 4 333 4 4 4 1 4 777 1 4 4 0 0 3 0 3 55 4 7777 8888 77777 55 22 3 4 4 2222 88 1111111111111 999 555 555 3 3 3 3 3 55 55 4 1 1 4 4 4 55 7 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 66 5 2 66 4 9 8888 5 4 111 777 1 1 8 4 4 4 8 4 4 4 4 2 44 55 7777 4 33333333 9999 4 88 1 4 111111 4 00000 55 4 777 0000000000000000000000000000000000000000000000000 66 1 4 4
lowQualScore : . . . ... . . . . . ... . . . . . . . . .. . .... .... ..... .. .. . . . .... .. ............. ... ... ... . . . . . .. .. . . . . . . .. . ............................................................................................................. .. . . .. . . .... . . ... ... . . . . . . . . . . . . .. .. .... . ........ .... . .. . . ...... . ..... .. . ... ................................................. .. . . .
lowQualScore : 0 4 4 999 0 0 0 6 0 000 0 0 0 1 8 6 5 6 55 0 7777 5555 33333 00 55 6 0 0 7777 66 7777777777777 222 888 888 6 6 6 6 6 55 55 4 0 9 4 4 4 66 3 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 99 0 4 55 0 8 5555 7 0 000 000 2 7 4 4 4 4 0 0 0 0 0 5 11 55 0000 0 55555555 2222 0 66 1 4 555555 0 00000 55 0 000 5555555555555555555555555555555555555555555555555 11 9 4 0
consensus : TTGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCCA-TTACTAAATGTTGTA-GTCGT---CGACTTCTCGTTAG-GATTATTGTATTCTT-GGATGCAAACCACAGAAAACGGGCTCGTAGCTCTGATGCTGCTG-ATAACAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-GAATTAAG----TG----GA-A---ATTTGGGTAATAAAAATTC--CAAATCCGCAGCTTTGAGTCCAAA-CAGGTCGTG-TAATA-GGCAACATACACAT----TTTT--GGTC-------------TT---AT---AC---TATTGC-GGCAA-GG-ACAAAA-TC-GTTGGTTTTGTTTACATTCTGGA--TAGCCATA--ACAGTCATCA-GGCAAGGTTGCATCCCGGTACA-TTCC-ATTGCGACAGAG-CATGGTGTGAA-CC-CCAGCAGCACAT------CCA---------------------CTTA----------------------TAC-CA------AACAGGAA----------C---------------T------T--TTTTTACACAAACCTGGAGTAA-CATGTGGGAAATGA-CAT-CCATTCACTAA----TAACATTTGG-AGT---G---AATAACGTGGAAGCAGATACCCCGGTATCT-CCTATGTA-CG-ATCTCATGTC-ACA-GTCCTCAGCTTGT-ATG-AACA-GAAAGCGCTGACAATTTCCTCCCTGGACCA--GTTTTGGAATCTCCTAACCTTGACA----ACAGACAAACCTGCTT-CACAA--------AACCAACAGA-AGATG-T--TTTCAATCAGCATG-TCCTCAGAGCAAGGTACC------AGACCAGCAT-CTGGTGG-----CAAAG--TC-A---CATC-A--------------C-A--------G-C-------------------CTGGCAACAAAT--GGTATTTGTC-AGGTCAGTTTAATACAAAGAATC-AAGCTCCAGTGGAAG
Reference ( family-8621 ) : TTGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCCA-TTACTAAATGTTGTA-GTCGT---CGANTTCTCGTTAG-GATTATTGTATTCTT-GGATGCAAACCACAGAAAACGGGCTCGTAGCTCTGATGCTGCTG-ATAACAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-GAATTAAG----TG----GA-A---ATTTGGGTAATAAAAATTC--CAAATCCGCAGCTTTGAGTCCAAA-CAGGTCGTG-TAATA-GGCAACATACACAT----TTTT--GGTC-------------TT---AT---AC---TATTGC-GGCAA-GG-ACAAAA-TC-GTTGGTTTTGTTTACATTCTGGA--TAGCCATA--ACAGTCATCA-GGCAANGTTGCATCCCGGTACA-TTCC-ATTGCGACAGAG-CATGGTGTGAA-CC-CCAGCAGCACAT------CCA---------------------TTTA----------------------TAC-CA------AACAGGAA----------C---------------T------T--TTTTTACACAAACCTGGAGTAA-CANGTGGGAAATGA-CAT-CCATTCACTAA----TAACATTTGG-AGT---G---AATAACGTGGAAGCAGATGCCCCGGTATCT-CCTATGTA-CG-ATCTCATGTC-ACA-GTCCTCAGCTTGT-ATG-AACA-GAAAGCGCTGACAATTTCCTCCCTGGACCA--GTTTTGGAATCTCCTGACCTTGACA----ACAGACAAACCTGCTT-CACAA--------AACCAAC--A-AGATG-T--TTTCAATCAGCATG-TCCTCAGAGCAAGGTACC------AGACCAGCAT-CTGGTGG-----CAAAG--TC-A---CATC-A--------------C-A--------G-C-------------------CTGGCAACAAAT--GGTATTTGTC-AGGTCAGTTTAATACAAAGAATC-AAGCTCCAGTGGAAG
gi|1 : TGCTG-ACCAGAAAT-A-T-----AA-AAAAGTAG-CCAA-TTACTAAATGTTGTA-GCCGT---CGAGTTCTCTTTAG-GATTATTGTATTCTT-TGATGCAAACCACAGTAAACGGGATCGTAGTTCTCATGCTGCTG-ATAACAAC-CATTTTGTTTCATTTATAAGGTAG--CCCATATCG-GAATTAAG----TG----GA-G---ATTTGGGTAATAGAAATTC--TAAATCTGCAGATTTGAGTCCAAA-TAGGTCGCG-TATTA-GACAACATACACAT----TTGT--GGTCAGTTGTGGTCTTATC---AT---AC---TATTGC-GACAA-GG-ACAAAA-TC-GCTGGTTTTGTTTACATTCTGGA--TAGCCATA--ACAGTCATCA-GGCAACGTCACATCCCATTACA-TTCC-ATTGCAACAGAG-CAGGGTGCGAACCC-CCAGCAGCACAT------CCA---------------------CTTACTAGACAAGACAGCACAGTTTATAC-CA------AACAGGAA----------C---------------TTGC---T--TTTTTGCACAAACCCGGAGTAA-CACGTGGGAAATTA-CAT-CCATTCACTAA----TAACATTTGA-AGTACAG---ACTAATGTGGACGCAGATGCCCTGGTATAT-ACTATGTA-CG-ATCTCATGTC-ACA-GTCCTCAGCTTGT-ATG-AACA-GAAAACGCTGACAATTTCTTCTCTGAAGCA--ATTTTGAAATCCCCTGACCTTGACA----ACAGACAAACCTGCTT-CTCAA--------CACCAACAGA-AGATG-T--TTTCAA------------TCAGAACAAGGTATC------AGACCAGCAT-CTGGTGGAAAAACAAGGTATC-AGACCATC-ATCTGCTGGAAAAGTC-AAATCACGAG-T-------------------CTGGCTACAAAT--GGTATTTGTC-AGGTCAGTTAAATACAACGAATC-TAGC
gi|10 : TTGTAATCTT-GAATGCAAACCACAGAAAACGTGCTCGTAGCTCTGATGATGCTG-ATAACAAC-CATTTTGTTTAATTCATAAGGTAA--CCCAGATCG-GAATTAAG----TG----GAGA---ATTTGGGTAATAAAAATTC--CAAATCCTCAGCTTTGAGTCCAAA-CAGGTCGTG-TGATA-GGCAACATACACAG----TTTT--GGTC-------------TT---AT---TC---TATTAC-GGCAA-GG-ACAAAA-TC-GTTGGTTTTGTTTTCATTCTGGA--TAACTGTA--ACAGTCATTA-GGCAAGGTTGTATCCCGGTACA-TTCC-ATTGCGACAGAG-CATGGTGTGAA-CC-TCAGCAGCACAT------CCA---------------------TT------------------------TAC-CA------GA
gi|11 : ATGCC-ACA-GTCCTCAGCTTTC-ATG-AACA-AAAAGCGATGTCAATTTCCTCCAT---------TTTTGGAATCTCCCGACCTTGACA----ACAGACAAACCTGCTT-CACAA--------AACCAAC--A-GAACA-TG-TTTCAATCGAAATG-TCCTCAGAGCAAGGTACC------AGACCAGCAT-CTGGTAG-----CAAAA--TT-A---CATC-A--------------CAA--------G-C-------------------CCGACAACAAAT--GGTATTTGAC-AGTTCAGTTTAATACAAAGAGTC-AAGCTCCAGTGGAAGtgtgacgtacagcgcagt
gi|12 : TAG-GATTATTGTATTCTT-GGATGCAAACCATAGAAA-CGGGCTCGTAGGTCTGATGCTGCTA-ATAACAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-GAATTAAG----TG----GG-A---ATTTGGGTAATAAAAATTC--CAAATCCGCAGCTTTGAGTCCAAA-CAGGCTGTG-CAATA-GGCAACATACAAAT----TTTT--GGTC-------------TT---AT---AC---TATTGC-GACAA-GG-ATAAAA-TA-GTTGGTTTTGTTTACATT
gi|13 : TGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCCA-TTACTAAATGTTGTA-GCCGG---CGACTTCCCCTTAG-GAATATTGTTTTCTT-GGATGCAAACCACAGGGAACGGGCTCGTAGTTCTCATGCTGCTG-ATAACAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-G------------------------ATTTGGGTAACACAAATTC--CAAATCCGCAGATTTGAGTCCAAA-CAGGTCGT
gi|14 : cATGTGGGGGATGG-AAT-CCATTCAC-AA----TAAC-------------G---AATGACGTGAACACAGATACAT--GTATCT-CTTTTGTT-CG-ATCTCATGTCCACA-GTCCACAGCTTGA-ATG-AAAA-GAAAACGATGGC-ATTTTCTCCCTGGACCA--GGTTTGATATTTCCTAACCTTGACAATGTACAGACAAA-CTGCTT-CACAGAATTTTGTAACCTACAGA-AGATG-T--TTTCAATC
gi|15 : aATGTGGGGGATGG-AAT-CCATTCAC-AA----TAAC-------------G---AATGACGTGAACACAGATACAT--GTATCT-CTTTTGTT-CG-ATCTCATGTCCACA-GTCCACAGCTTGA-ATG-AAAA-GAAA-CA-TGGCA--TTTCTCCCTGGACCA--GGTTTGATATTTCCTAACCTTGACAATGTACAGACAAAC--GCTT-CACAGAATTTTGTAACCTACAGA-AGATG-T--TTTCAATC
gi|16 : aTGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCCA-TTACTGAATGTTGTA-GTCGT---CGACTTCTTGTTAA-GATTATTGTATTCTT-GAATACAAACCACAAAAA--GGGCTCGTAGCTCTGATGCTGCTG-ATAACAAC-CATTTTGTTTAATTTACAATGTAA--CCCATATCG-GAATTAAG----
gi|17 : --TTTCAATCAGCATG-TCCTCAGAGCAAGGTACT------AGACCAACAT-C-------------AAA--TA-A---CA--------------------A--------G-C-------------------CTGGCAACAAAT--AGTATTTGTC-AGGTCAGTTTAATACAAAGAATC-AAGCTCCAATGGAga
gi|18 : TTGTTG-ACCA--AAT-A-TC----AA-ACCGGTAT-CCCAATTACTAA--GTTGTA-GTC-T---CGACTTCTCGTTAGTGATTAcgtcc
gi|19 : A-A---ATTTAG-TAAGAAAGAATT--CAGGTCAACAGCTCTGGGTCGAGG-TAGATCAGG-TAACA-GGAAACAAACATATATTTTTTT--GGCC-------------TA---AT---ACAGGTATTGaatttcagtatggcgtcgtgacgacgcaccac
gi|2 : CAGAAAT-A-TCCCAAAA-AAAGATAT-CCTA-TT-CTAAATATTGTA-GTTGT---TGAGTTCTCATTAG-GATTATTGTATTCCT-G-ATGCAAACCACAGAAAACGGGCTCGTAGCTCTCATGCTGCTGAATAA-AAC-CATTTTCTTTATTTTATAAGTTAA--CCCAGATCG-GAATTAAG----TG----AA-G---ACT--GGTAATAAAAATTA--CACATTCACAGCTTTGAGTCCAAA-CAGGTCGTGTTAATA-GGCAACATACACAT----TTTCA-AATCT------------TT---AT---AC---TTATGCGGGCAA-GG-ACAAAA-TC-GTTGGCTTTGTTT-TATTCTGGA--TAG-CATA--ACAGTCATCA-GGC-ACGTTGCATCCCGGTACAGTTCCAATTGCGACAGAA-CATGGTGTGAA-CCTCCAGCAGCACAT------CGA---------------------CTTA----------------------
gi|2 : TGTGA------CAGCAACA-----------G---------------------TTTA----------------------TAC-CA------AACAGGAA----------CTTGATTTGGTTTGTTT------T--TTTTTACACAAATCTGGAGTAA-CATGTGGGAAATAA--AT-TCATTCACAAATATGTAACATTTGG-AGTTCAA---AATAATGTGGAAGCAGATGCCCCGGCATCT-CCTATTTA-CGAATCTAATGTC-ACACGTCCTCGCCTTGTAATA-AACATAAAAGCGCTGACAATTTCATCCCTGGACCA--GTTTTGGAATCTCATGACCTTGACA----ACAGACAAACCTGCTT-CACAA--------AACCAAC--AGAGACGTT--TTTCTATCAAAATA-TCCCTAGAGC-AGGCACC------AGACCAGCAT-CTGGTGG-----CAAAG--TCGA---TCTC-A----------------A--------G-T-------------------CTGGCAACAAAT--GATATTTGTCAAGGTCAGTTTAACACAAAGAAT--AAGCTACGGTGGAAGctatatatatgtgacagcaacagtttataccaaacaggaacttgatttggtttgtttttttttacacaaatctggagtaacatgtgggaaataaattcattcacaaatatgtaacatttggagttcaaaataatgtggaagcagatgccccggcatctcctatttacgaatctaatgtcacacgtcctcgccttgtaataaacataaaagcgctgacaatttcatccctggaccagttttggaatctcatgaccttgacaacagacaaacctgcttcacaaaaccaacagagacgtttttctatcaaaatatccctagagcaggcaccagaccagcatctggtggcaaagtcgatctcaagtctggcaacaaatgatatttgtcaaggtcagtttaacacaaagaataagctacggtggaagtcc
gi|20 : cagaaatatcccaaaaaaagatatcctattctaaatattgtagttgttgagttctcattaggattattgtattcctgatgcaaaccacagaaaacgggctcgtagctctcatgctgctgaataaaaccattttctttattttataagttaacccagatcggaattaagtgaagactggtaataaaaattacacattcacagctttgagtccaaacaggtcgtgttaataggcaacatacacattttcaaatctttatacttatgcgggcaaggacaaaatcgttggctttgttttattctggatagcataacagtcatcaggcacgttgcatcccggtacagttccaattgcgacagaacatggtgtgaacctccagcagcacatcgacttactatatataC-------------TC---AT---AC---TATTGC-GGCAA-GGGACAAAA-TCAGCCGGCTTTGTTTACATTCTGGA--TAGCCAT---ACAGTCAtcc
gi|21 : TCAGAGCAAGGTACC------AAACCAGCAT-CTGTTGG-----CAAAG--TC-A---TATC-G--------------C-
gi|22 : tcgccagtctgTTGAATACAAAGAGTC-AAGCTCCAGTGGAAGcagt
gi|3 : TTGTTGCACCAGAAATTACTCCTA-AATAAATGTATTCCCA-TTACT-AAT-TTGTATGTCGTTTCCGACTTCTCGTtccaagac
gi|3 : ttcCGGTTTCGTAGCTCTGA-GCTGCTG-ATA-CAACACATTTTGTTGTATTTATAAGCTAAGGTCCAGATCAAGAATTGAGAGGTTG----AA-ACCGATTTGG--AATAAAGATTCTTCAAATC-GCAGCTT-AAGTCCAAAGCAGGTCGTG-TGATAAGGAAAGAT-CAGAT----CTTTTGGGTC-------------TTT--AC---AC---TATTGC-G-CAACGG-ACAAAAATT-GT-GGTTTTGTTTGCATTCTGGGATTAACTATAAGACAGTCATTAGGGCAAGGTGAAATCCCGGTACA-TCC---TTGCGACAGAG-CATGGTGTGAA-AC-CCAGGCCCACAA------TCA---------------------CTTA----------------------aacgcggtttcgtagctctgagctgctgatacaacacattttgttgtatttataagctaaggtccagatcaagaattgagaggttgaaaccgatttggaataaagattcttcaaatcgcagcttaagtccaaagcaggtcgtgtgataaggaaagatcagatcttttgggtctttacactattgcgcaacggacaaaaattgtggttttgtttgcattctgggattaactataagacagtcattagggcaaggtgaaatcccggtacatccttgcgacagagcatggtgtgaaacccaggcccacaatcacttaaggattctgaacagtcagcacaatcgcacttatcagatgatgaccagcaacagtaattataccaacagaactattggattttttacacaaacctacagtaactagtggaaaataaccataccattcacataactttggaagtgaataatttggaagcagattccccggtgtctccctatgtagcgatatctgtcacgtccttgtatgtatgaaacaaaaggctgacattcctcctgaaccattgttttggaactcctaaactgacaaacctgcttccagaacaccaacagaatgttattttaatcagcaagttccgcagagcaagcaccagaagcacattggtggcaaagtcacatctacaatcctggcaacaaactaagtattgtcaggtcagtttaatacaagaatctaagcctcagtggaagtc
gi|3 : ttcttgttgcaccagaaattactcctaaataaatgtattcccattactaatttgtatgtcgtttccgacttctcgtaacg-CCAGCAACA-GT--------A---------------------ATTA----------------------TAC-CA------A-CAG-AA----------C---------------TATTGGAT--TTTTTACACAAACCTACAGTAA-CTAGTGGAAAATAACCATACCATTCAC--A----TAAC-TTTGGAAGT---G---AATAATTTGGAAGCAGATTCCCCGGTGTCTCCCTATGTAGCG-ATATC-TGTC-AC--GTCCTT-GTATGT-ATGAAACA--AAAG-GCTGACA--TTCCT-CCTGAACCATTGTTTTGGAA-CTCCTAAACT------------GACAAACCTGCTTCCAGAA--------CACCAAC--A-GAATG-TTATTTTAATCAGCAAGTTCCGCAGAGCAA-GCACC------AGA--AGCACATTGGTGG-----CAAAG--TC-A---CATCTA--------------C-A--------ATC-------------------CTGGCAACAAACTAAGTA-TTGTC-AGGTCAGTTTAATAC-AAGAATCTAAGCCTCAGTGGAAGaggattctgaacagtcagcacaatcgcacttatcagatgatgaccagcaacagtaattataccaacagaactattggattttttacacaaacctacagtaactagtggaaaataaccataccattcacataactttggaagtgaataatttggaagcagattccccggtgtctccctatgtagcgatatctgtcacgtccttgtatgtatgaaacaaaaggctgacattcctcctgaaccattgttttggaactcctaaactgacaaacctgcttccagaacaccaacagaatgttattttaatcagcaagttccgcagagcaagcaccagaagcacattggtggcaaagtcacatctacaatcctggcaacaaactaagtattgtcaggtcagtttaatacaagaatctaagcctcagtggaagtc
gi|4 : ttcttgttgcaccagaaattactcctaaataaatgtattcccattactaatttgtatgtcgtttccgacttctcgtaacgcggtttcgtagctctgagctgctgatacaacacattttgttgtatttataagctaaggtccagatcaagaattgagaggttgaaaccgatttggaataaagattcttcaaatcgcagcttaagtccaaagcaggtcgtgtgataaggaaagatcagatcttttgggtctttacactattgcgcaacggacaaaaattgtggttttgtttgcattctgggattaactataagacagtcattagggcaaggtgaaatcccggtacatccttgcgacagagcatggtgtgaaacccaggcccacaatcacttaaggattctgaacagtcagcacaatcgcacttatcagatgatga-AAAGGTAT-CCCA-TTACTAAATTTTGTA-GTCAT---TGAGTTCTCGCTTT-GATTATTGTAGTCTTTGGATGAAAATCGCTGTAAACGGACT----------AAGCTGCTG-ATAGCAAC-CATTATGTTTAGTTCATAAGCTAA--TCCAGATTG-GAATGAAG----TGCAAGGA-A---ATCTGGGTGGTAAAAAT-C--CAAATAGGCAGCTTTGAGTCCAGA-TAGATCGTG-TAATA-GGGAGCATACACATAT--TTTT--GGTC-------------TTATCAT---AC---TATT----GTAA-AG-ACAAAA-TC-GATGGTTTTGTTTACATGCTGGA--TGGCCATA--ACAGTCAACA-GGCTACGTTATATCCCGGTACA-TTCC-ATTGCGACAGAT-CATGGTGTGAA-CC-CCAGCAGCACAT------CCA---------------------CT------------------------TAC-CAGGATATGACAGCAC----------A---------------T------T--TGACAACA-AAACCTGTAGTAA-CATGTGGGGAATGA-CAT-TCATTCTCCAA----TGACATTTGG-GGTTTCG---AATAACGTGGAAGAAGATGTCC---------CCTACATA-TG-ATCTCAATTC-ACA-GTCCTCAGCTTGT-ATG-AAAA-GAAAGGGAGGACATTATCCTCCCTGGACCA--GTTTTGGTATATCCTAAATTTGACA----ACTGACAAACCCGCTT-CACAACATTTTGTAACCAAT----AGCTG-T--TTTCAATCAGCATG-TCTTTAGAGCAAGGTACCAGATCTAGACCAGCGT-CTGGTAG-----CAAAG--TA-A---CATC-GC-------------C-A--------G-TATGAACTTAGGTGATCTTGTTGGCAAAGAAT--GGTA--TGTC-AGATCAGTTAATTACAAAGAATC-AATCTCCAGTtc
gi|5 : TTGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCTA-TTACTAAATCTTGTA-GTCGT---CGACTTCTCGTTAG-GATTGTTGTATTCTT-GGATGCAAACCACAGATCACGGGTTCGTATCTCTGATGCTGCTG-ATATCAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-GAATTGAG----TG----GA-A---ATTTGGGTAATTAAAATTC--CAAATTCGCAGCTTTGAGTCCAAA-CTGGTCGTG-TAGTA-AGCGACATACACAT----TTTT--GGTC-------------TT---GT---AC---TATTGC-GGTAA-GG-ACAAAA-TT-GCTGGTTTTGTTTACATTCTGTA--TAACTATA--ACAGTCATTA-GGCAAGGTTGCATCCCGGTACA-TTTC-ATTGCGACAGAG-CATGGTGTGAA-TC-CCAGCAGCGCAT--------A---------------------TTTA----------------------TGC-CA------AACAGGAA----------C---------------T------T--TTCTCATACAAACCTAGAGTAA-CAAGTGGGAAATGA-CAT-CCATTCACTAA----TAGCATTTGT-AGT---G---AATAATGTGGAGGCAGATACCCCGGTATAT-CCAATGGA-CG-ATCCCATGTC-ACA-GTCCTCAGCTTGT-ATG-AACA-GAAAGCGCTGACAATTTCCTCCCTGAACCA--GTTTTGGAATTTCCTAACCTTGACA----ACAGACAAACCTGCTT-CACAA--------AACTAAC----ATATG-T--TTTCAATCAGCATG-TCCTCAGAGCAAGGTATC------AGACTAACAT-CTGGTGG-----CAAAG--TC-A---CGTC-A--------------C-A--------G-C-------------------CTGGCAACAAAT--AGTATTTGTC-AGGTCAGTTTAATACAAAGATTC-AAACTCCAGTGGAAG
gi|6 : ATACACAT----TTGT--GGTG-------------TT---ATCATAC---TATTGC-GGCAA-GG-ACAAAA-TC-GCCGGCTTTGTTTACATTCTGGA--TAGCCATA--ACAGTCATCT-GGGAACGTTACATCCCGTTACA-TTCC-ATTGCTACAGAG-CATGGTGTGAA-CCTCCAGCAGCACACCCCTTACCAGACGTGACAGCACAG------TTTA----------------------TAC-CA------AACAGGAA----------C---------------T------TGTTTTTTGCACAAACCTGGA-TAATCATGTGGGAAATGA-CAC-CCATTCACTAA----TAACATTTGG-GGT---GCAGAATAATGTGGAAACAGATACCCCGGTCTCT-CCTATGTA-CG-ATCTCATGTC-ACA-GTCCTCAGTTTGC-ATG-AACA-GAAAACGCTGACAATTTCCTTCCTGAATCA--GTCTTGGAATCTCCTGACCTTGATA----ACAGACAAACCTGCTT-CACAA--------AACCAACAGA-AGATA-T--TTTCAACCAGAATG-TCACCAGAACAAGGCACC------AGACCAGTAT-ATGGTAG-----C-TAG--TC-A---CATC-A--------------CAA--------G-C-------------------CTGGCAACAAAT--GGTATTTGTC-AGGTCAGTTTAACACAAAGACTC-ACGTTCCAGTGG
gi|7 : gtGTTG-ACCAGAATT-A-TCC---AA-AAAGGTAT-CCCA-TTACTAAATGT---A-GTTGT---AGAGTTCTCGATAG-GATTATTGTATTCTT-GGATGCAAACCACA--AAACGGGCTCGTAGCTCTGATGTTGCTG-ATAGCAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-AAATTAAG----TG----GA-G---ATTTGGGTAATAAAAAATC--GAAATCC-CAGATTTGAGTCCAAA-CAGGTCGTG-TAATA-GGCAACATACACAT----TTTT--GGTG-------------TT---TT---AC---CATTGC-GGCAA-GG-ACAAAA-TC-GTT-GTTTTGTTTACATTCTGGA-----------------CATTA-GGCAAGGTTG-ATCCCGGT-CA-TT-C-ATTGCAACAGAATCATGGTGTGAA--C-CCAGCAGCACAC------CCATTATCAGATGTGACAGCACATTTTA----------------------TACGCA------TACAGGAAACTTGTTGGTT---------------T------T--TTTTTACACAAACCTGGAGTAA-------------------------CACTGA----TAACATTTGG-AGT---G---AATAATGTGGAAGCAG
gi|8 : TGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCCA-TTGCTAAATGTTGTA-GTCGT---CTATTTCTCGTTAG-GAATATTGTATTCTT-GGATGCAAACCACAGAAAACGGGCTCGTAGCTCTGATGCTGC----TAACAAC-CATTTGGTTTCATTT
gi|8 : AATTAAG----TG----GA-A---ATTTGAGTATTAAA--TTA--CAAATCCCCAGCTCTGAGTCCAAA-CAGGTCGTG-TAATA-GGCAACATTCACAT----TTTT--GGTC-------------TT---AT---AC---TATTGC-GGCAA-GG-ACAAAA-TC-GTTGGTTTTGTTTACATTCTGGA--CAACTATA--ACAGTCATTA-GGCAAGGTTGCATCCCAGTACA-TTCC-ATTGCGACAGAG-CATGGTGTTAA-CC-CCAGCAGCACAT------CCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattaagtggaaatttgagtattaaattacaaatccccagctctgagtccaaacaggtcgtgtaataggcaacattcacatttttggtcttatactattgcggcaaggacaaaatcgttggttttgtttacattctggacaactataacagtcattaggcaaggttgcatcccagtacattccattgcgacagagcatggtgttaaccccagcagcacatcc
gi|9 : tgttgaccagaaatatccaaaaaggtatcccattgctaaatgttgtagtcgtctatttctcgttaggaatattgtattcttggatgcaaaccacagaaaacgggctcgtagctctgatgctgctaacaaccatttggtttcatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTA----------------------TAC-CA------AACAGGAA----------CTTGTTGGTTTTTT--T------T--TTTTTACACAAACCTAGAGTAA-CAAGTGGGAAATGA-CAT-CCATTCACTAA----TAACATTTGG-AGT---G---AATAATATGGAAGTAGATACCCCGGTATCT-CCAATGTA-CG-ATCTCATGTC-ACA-GTCCTCAGCTTGT-ATG-AACA-AAAAGCGCTGACAA-TTCCTCCCTGGACCA--GTTTTGGAATCTCCTAA-CTTGATA----ACAAA-AAACCTGCTT-CACAA--------AA-CA---------------TTTCAATTAGCATG-TCCTCAGAGCAAGGTACC------AGACTAACAT-CTGGTAG-----CAAAG--TC-A---CGTC-A--------------CAA--------G-C-------------------CTGGCAACAAAT--AGTATTTGTC-AGGTTAGTTTGATACAAAGAATC-AAGCGCCAGTGGAAG
Alignments
lowQualScore : 111 1111 2222222222222 77777777777777777777777777777777777777777777777777777777777777777777777 111111 88888888888888888888888888888888888888888888888 222 1111 44444444 111111 11111 7777777777777777777777777777777777777777777777777
lowQualScore : 5 4 4 333 4 4 4 1 4 777 1 4 4 0 0 3 0 3 55 4 7777 8888 77777 55 22 3 4 4 2222 88 1111111111111 999 555 555 3 3 3 3 3 55 55 4 1 1 4 4 4 55 7 99999999999999999999999999999999999999999999999999999999999999999999999 4 222222 77777777777777777777777777777777777777777777777 5 2 66 4 9 8888 5 4 111 777 1 8 4 4 4 8 4 4 4 4 2 3 55 7777 4 33333333 333 7777 1 4 111111 4 00000 55 4 777 0000000000000000000000000000000000000000000000000 66 1 4 4
lowQualScore : . . . ... . . . . . ... . . . . . . . . .. . .... .... ..... .. .. . . . .... .. ............. ... ... ... . . . . . .. .. . . . . . . .. . ....................................................................... . ...... ............................................... . . .. . . .... . . ... ... . . . . . . . . . . . . .. .... . ........ ... .... . . ...... . ..... .. . ... ................................................. .. . . .
lowQualScore : 0 4 4 999 0 0 0 6 0 000 6 0 0 1 8 6 5 6 55 0 7777 5555 33333 00 55 6 0 0 7777 66 7777777777777 222 888 888 6 6 6 6 6 55 55 4 1 9 4 4 4 66 3 00000000000000000000000000000000000000000000000000000000000000000000000 4 888888 88888888888888888888888888888888888888888888888 0 7 55 0 8 5555 7 0 000 000 2 4 4 4 4 0 0 0 0 0 5 4 55 0000 0 55555555 888 3333 1 4 555555 0 00000 55 0 000 5555555555555555555555555555555555555555555555555 11 9 4 0
consensus : TTGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCCA-TTACTAAATGTTGTA-GTCGT---CGACTTCTCGTTAG-GATTATTGTATTCTT-GGATGCAAACCACAGAAAACGGGCTCGTAGCTCTGATGCTGCTG-ATAACAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-GAATTAAG----TG----GA-A---ATTTGGGTAATAAAAATTC--CAAATCCGCAGCTTTGAGTCCAAA-CAGGTCGTG-TAATA-GGCAACATACACAT----TTTT--GGTC-------------TT---AT---AC---TATTGC-GGCAA-GG-ACAAAA-TC-GTTGGTTTTGTTTACATTCTGGA--TAGCCATAA--CAGTCATCAGG-CAAGGTTGCATCCCGGTACA-TTCC-ATTGCGACAGAG-CATGGTGTGAA-CC-CCAGCAGCACATCC------------------A---------------------C---TTA----------------------TAC-CA------AACAGGAA----------C---------------T------T-------------TTTTTACACAAACCTGGAGTAA-CATGTGGGAAATGA-CAT-CCATTCACTAA----TAACATTTGG-AGT---G---AATAACGTGGAAGCAGATACCCCGGTATCT-CCTATGTA-CG-ATCTCATGTC-ACA-GTCCTCAGCTTGT-ATG-AACA-GAAAGCGCTGACAATTTCCTCCCTGGACCA--GTTTTGGAATCTCCTAACCTTGACA----ACAGACAAACCTGCTT-CACAA--------AACCAACAGAAGATG-T--TTTCAATCAGCATG-TCCTCAGAGCAAGGTACC------AGACCAGCAT-CTGGTGG-----CAAAG--TC-A---CATC-A--------------C-A--------G-C-------------------CTGGCAACAAAT--GGTATTTGTC-AGGTCAGTTTAATACAAAGAATC-AAGCTCCAGTGGAAG
Reference ( family-8621 ) : TTGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCCA-TTACTAAATGTTGTA-GTCGT---CGACTTCTCGTTAG-GATTATTGTATTCTT-GGATGCAAACCACAGAAAACGGGCTCGTAGCTCTGATGCTGCTG-ATAACAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-GAATTAAG----TG----GA-A---ATTTGGGTAATAAAAATTC--CAAATCCGCAGCTTTGAGTCCAAA-CAGGTCGTG-TAATA-GGCAACATACACAT----TTTT--GGTC-------------TT---AT---AC---TATTGC-GGCAA-GG-ACAAAA-TC-GTTGGTTTTGTTTACATTCTGGA--TAGCCATAA--CAGTCATCAGG-CAAGGTTGCATCCCGGTACA-TTCC-ATTGCGACAGAG-CATGGTGTGAA-CC-CCAGCAGCACATCC------------------A---------------------C---TTA----------------------TAC-CA------AACAGGAA----------C---------------T------T-------------TTTTTACACAAACCTGGAGTAA-CATGTGGGAAATGA-CAT-CCATTCACTAA----TAACATTTGG-AGT---G---AATAACGTGGAAGCAGATACCCCGGTATCT-CCTATGTA-CG-ATCTCATGTC-ACA-GTCCTCAGCTTGT-ATG-AACA-GAAAGCGCTGACAATTTCCTCCCTGGACCA--GTTTTGGAATCTCCTAACCTTGACA----ACAGACAAACCTGCTT-CACAA--------AACCAACAGAAGATG-T--TTTCAATCAGCATG-TCCTCAGAGCAAGGTACC------AGACCAGCAT-CTGGTGG-----CAAAG--TC-A---CATC-A--------------C-A--------G-C-------------------CTGGCAACAAAT--GGTATTTGTC-AGGTCAGTTTAATACAAAGAATC-AAGCTCCAGTGGAAG
gi|1 : TGCTG-ACCAGAAAT-A-T-----AA-AAAAGTAG-CCAA-TTACTAAATGTTGTA-GCCGT---CGAGTTCTCTTTAG-GATTATTGTATTCTT-TGATGCAAACCACAGTAAACGGGATCGTAGTTCTCATGCTGCTG-ATAACAAC-CATTTTGTTTCATTTATAAGGTAG--CCCATATCG-GAATTAAG----TG----GA-G---ATTTGGGTAATAGAAATTC--TAAATCTGCAGATTTGAGTCCAAA-TAGGTCGCG-TATTA-GACAACATACACAT----TTGT--GGTCAGTTGTGGTCTTATC---AT---AC---TATTGC-GACAA-GG-ACAAAA-TC-GCTGGTTTTGTTTACATTCTGGA--TAGCCATAA--CAGTCATCAGG-CAACGTCACATCCCATTACA-TTCC-ATTGCAACAGAG-CAGGGTGCGAACCC-CCAGCAGCACATCC------------------A---------------------C---TTACTAGACAAGACAGCACAGTTTATAC-CA------AACAGGAA----------C---------------TTGC---T-------------TTTTTGCACAAACCCGGAGTAA-CACGTGGGAAATTA-CAT-CCATTCACTAA----TAACATTTGA-AGTACAG---ACTAATGTGGACGCAGATGCCCTGGTATAT-ACTATGTA-CG-ATCTCATGTC-ACA-GTCCTCAGCTTGT-ATG-AACA-GAAAACGCTGACAATTTCTTCTCTGAAGCA--ATTTTGAAATCCCCTGACCTTGACA----ACAGACAAACCTGCTT-CTCAA--------CACCAACAGAAGATG-T--TTTCAA------------TCAGAACAAGGTATC------AGACCAGCAT-CTGGTGGAAAAACAAGGTATC-AGACCATC-ATCTGCTGGAAAAGTC-AAATCACGAG-T-------------------CTGGCTACAAAT--GGTATTTGTC-AGGTCAGTTAAATACAACGAATC-TAGC
gi|10 : TTGTAATCTT-GAATGCAAACCACAGAAAACGTGCTCGTAGCTCTGATGATGCTG-ATAACAAC-CATTTTGTTTAATTCATAAGGTAA--CCCAGATCG-GAATTAAG----TG----GAGA---ATTTGGGTAATAAAAATTC--CAAATCCTCAGCTTTGAGTCCAAA-CAGGTCGTG-TGATA-GGCAACATACACAG----TTTT--GGTC-------------TT---AT---TC---TATTAC-GGCAA-GG-ACAAAA-TC-GTTGGTTTTGTTTTCATTCTGGA--TAACTGTAA--CAGTCATTAGG-CAAGGTTGTATCCCGGTACA-TTCC-ATTGCGACAGAG-CATGGTGTGAA-CC-TCAGCAGCACATCC------------------A---------------------T---T------------------------TAC-CA------GA
gi|11 : ATGCC-ACA-GTCCTCAGCTTTC-ATG-AACA-AAAAGCGATGTCAATTTCCTCCAT---------TTTTGGAATCTCCCGACCTTGACA----ACAGACAAACCTGCTT-CACAA--------AACCAACAGAACATG----TTTCAATCGAAATG-TCCTCAGAGCAAGGTACC------AGACCAGCAT-CTGGTAG-----CAAAA--TT-A---CATC-A--------------CAA--------G-C-------------------CCGACAACAAAT--GGTATTTGAC-AGTTCAGTTTAATACAAAGAGTC-AAGCTCCAGTGGAAGtgtgacgtacagcgcagt
gi|12 : TAG-GATTATTGTATTCTT-GGATGCAAACCATAGAAA-CGGGCTCGTAGGTCTGATGCTGCTA-ATAACAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-GAATTAAG----TG----GG-A---ATTTGGGTAATAAAAATTC--CAAATCCGCAGCTTTGAGTCCAAA-CAGGCTGTG-CAATA-GGCAACATACAAAT----TTTT--GGTC-------------TT---AT---AC---TATTGC-GACAA-GG-ATAAAA-TA-GTTGGTTTTGTTTACATT
gi|13 : TGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCCA-TTACTAAATGTTGTA-GCCGG---CGACTTCCCCTTAG-GAATATTGTTTTCTT-GGATGCAAACCACAGGGAACGGGCTCGTAGTTCTCATGCTGCTG-ATAACAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-G------------------------ATTTGGGTAACACAAATTC--CAAATCCGCAGATTTGAGTCCAAA-CAGGTCGT
gi|14 : cATGTGGGGGATGG-AAT-CCATTCAC-AA----TAAC-------------G---AATGACGTGAACACAGATACAT--GTATCT-CTTTTGTT-CG-ATCTCATGTCCACA-GTCCACAGCTTGA-ATG-AAAA-GAAAACGATGGC-ATTTTCTCCCTGGACCA--GGTTTGATATTTCCTAACCTTGACAATGTACAGACAAA-CTGCTT-CACAGAATTTTGTAACCTACAGAAGATG-T--TTTCAATC
gi|15 : aATGTGGGGGATGG-AAT-CCATTCAC-AA----TAAC-------------G---AATGACGTGAACACAGATACAT--GTATCT-CTTTTGTT-CG-ATCTCATGTCCACA-GTCCACAGCTTGA-ATG-AAAA-GAAA-CA-TGGCA--TTTCTCCCTGGACCA--GGTTTGATATTTCCTAACCTTGACAATGTACAGACAAAC--GCTT-CACAGAATTTTGTAACCTACAGAAGATG-T--TTTCAATC
gi|16 : aTGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCCA-TTACTGAATGTTGTA-GTCGT---CGACTTCTTGTTAA-GATTATTGTATTCTT-GAATACAAACCACAAAAA--GGGCTCGTAGCTCTGATGCTGCTG-ATAACAAC-CATTTTGTTTAATTTACAATGTAA--CCCATATCG-GAATTAAG----
gi|17 : --TTTCAATCAGCATG-TCCTCAGAGCAAGGTACT------AGACCAACAT-C-------------AAA--TA-A---CA--------------------A--------G-C-------------------CTGGCAACAAAT--AGTATTTGTC-AGGTCAGTTTAATACAAAGAATC-AAGCTCCAATGGAga
gi|18 : TTGTTG-ACCA--AAT-A-TC----AA-ACCGGTAT-CCCAATTACTAA--GTTGTA-GTC-T---CGACTTCTCGTTAGTGATTAcgtcc
gi|19 : A-A---ATTTAG-TAAGAAAGAATT--CAGGTCAACAGCTCTGGGTCGAGG-TAGATCAGG-TAACA-GGAAACAAACATATATTTTTTT--GGCC-------------TA---AT---ACAGGTATTGaatttcagtatggcgtcgtgacgacgcaccac
gi|2 : CAGAAAT-A-TCCCAAAA-AAAGATAT-CCTA-TT-CTAAATATTGTA-GTTGT---TGAGTTCTCATTAG-GATTATTGTATTCCT-G-ATGCAAACCACAGAAAACGGGCTCGTAGCTCTCATGCTGCTGAATAA-AAC-CATTTTCTTTATTTTATAAGTTAA--CCCAGATCG-GAATTAAG----TG----AA-G---ACT--GGTAATAAAAATTA--CACATTCACAGCTTTGAGTCCAAA-CAGGTCGTGTTAATA-GGCAACATACACAT----TTTCA-AATCT------------TT---AT---AC---TTATGCGGGCAA-GG-ACAAAA-TC-GTTGGCTTTGTTT-TATTCTGGA--TAG-CATAA--CAGTCATCAGG-C-ACGTTGCATCCCGGTACAGTTCCAATTGCGACAGAA-CATGGTGTGAA-CCTCCAGCAGCACATCG------------------A---------------------C---TTA----------------------
gi|2 : TGTGA------CAGCAACA-----------------------G---------------------T---TTA----------------------TAC-CA------AACAGGAA----------CTTGATTTGGTTTGTTT------T-------------TTTTTACACAAATCTGGAGTAA-CATGTGGGAAATAA--AT-TCATTCACAAATATGTAACATTTGG-AGTTCAA---AATAATGTGGAAGCAGATGCCCCGGCATCT-CCTATTTA-CGAATCTAATGTC-ACACGTCCTCGCCTTGTAATA-AACATAAAAGCGCTGACAATTTCATCCCTGGACCA--GTTTTGGAATCTCATGACCTTGACA----ACAGACAAACCTGCTT-CACAA--------AACCAACAG-AGACGTT--TTTCTATCAAAATA-TCCCTAGAGC-AGGCACC------AGACCAGCAT-CTGGTGG-----CAAAG--TCGA---TCTC-A----------------A--------G-T-------------------CTGGCAACAAAT--GATATTTGTCAAGGTCAGTTTAACACAAAGAAT--AAGCTACGGTGGAAGctatatatatgtgacagcaacagtttataccaaacaggaacttgatttggtttgtttttttttacacaaatctggagtaacatgtgggaaataaattcattcacaaatatgtaacatttggagttcaaaataatgtggaagcagatgccccggcatctcctatttacgaatctaatgtcacacgtcctcgccttgtaataaacataaaagcgctgacaatttcatccctggaccagttttggaatctcatgaccttgacaacagacaaacctgcttcacaaaaccaacagagacgtttttctatcaaaatatccctagagcaggcaccagaccagcatctggtggcaaagtcgatctcaagtctggcaacaaatgatatttgtcaaggtcagtttaacacaaagaataagctacggtggaagtcc
gi|20 : cagaaatatcccaaaaaaagatatcctattctaaatattgtagttgttgagttctcattaggattattgtattcctgatgcaaaccacagaaaacgggctcgtagctctcatgctgctgaataaaaccattttctttattttataagttaacccagatcggaattaagtgaagactggtaataaaaattacacattcacagctttgagtccaaacaggtcgtgttaataggcaacatacacattttcaaatctttatacttatgcgggcaaggacaaaatcgttggctttgttttattctggatagcataacagtcatcaggcacgttgcatcccggtacagttccaattgcgacagaacatggtgtgaacctccagcagcacatcgacttactatatataC-------------TC---AT---AC---TATTGC-GGCAA-GGGACAAAA-TCAGCCGGCTTTGTTTACATTCTGGA--TAGCCAT-A--CAGTCAtcc
gi|21 : TCAGAGCAAGGTACC------AAACCAGCAT-CTGTTGG-----CAAAG--TC-A---TATC-G--------------C-
gi|22 : tcgccagtctgTTGAATACAAAGAGTC-AAGCTCCAGTGGAAGcagt
gi|3 : TTGTTGCACCAGAAATTACTCCTA-AATAAATGTATTCCCA-TTACT-AAT-TTGTATGTCGTTTCCGACTTCTCGTtccaagac
gi|3 : ttcCGGTTTCGTAGCTCTGA-GCTGCTG-ATA-CAACACATTTTGTTGTATTTATAAGCTAAGGTCCAGATCAAGAATTGAGAGGTTG----AA-ACCGATTTGG--AATAAAGATTCTTCAAATC-GCAGCTT-AAGTCCAAAGCAGGTCGTG-TGATAAGGAAAGAT-CAGAT----CTTTTGGGTC-------------TTT--AC---AC---TATTGC-G-CAACGG-ACAAAAATT-GT-GGTTTTGTTTGCATTCTGGGATTAACTATAAGACAGTCATTAGGGCAAGGTGAAATCCCGGTACA-TCC---TTGCGACAGAG-CATGGTGTGAA-AC-CCAGGCCCACAATC------------------A---------------------C---TTA----------------------aacgcggtttcgtagctctgagctgctgatacaacacattttgttgtatttataagctaaggtccagatcaagaattgagaggttgaaaccgatttggaataaagattcttcaaatcgcagcttaagtccaaagcaggtcgtgtgataaggaaagatcagatcttttgggtctttacactattgcgcaacggacaaaaattgtggttttgtttgcattctgggattaactataagacagtcattagggcaaggtgaaatcccggtacatccttgcgacagagcatggtgtgaaacccaggcccacaatcacttaaggattctgaacagtcagcacaatcgcacttatcagatgatgaccagcaacagtaattataccaacagaactattggattttttacacaaacctacagtaactagtggaaaataaccataccattcacataactttggaagtgaataatttggaagcagattccccggtgtctccctatgtagcgatatctgtcacgtccttgtatgtatgaaacaaaaggctgacattcctcctgaaccattgttttggaactcctaaactgacaaacctgcttccagaacaccaacagaatgttattttaatcagcaagttccgcagagcaagcaccagaagcacattggtggcaaagtcacatctacaatcctggcaacaaactaagtattgtcaggtcagtttaatacaagaatctaagcctcagtggaagtc
gi|3 : ttcttgttgcaccagaaattactcctaaataaatgtattcccattactaatttgtatgtcgtttccgacttctcgtaacg-CCAGCAACA-GT--------------------A---------------------A---TTA----------------------TAC-CA------A-CAG-AA----------C---------------TATTGGAT-------------TTTTTACACAAACCTACAGTAA-CTAGTGGAAAATAACCATACCATTCAC--A----TAAC-TTTGGAAGT---G---AATAATTTGGAAGCAGATTCCCCGGTGTCTCCCTATGTAGCG-ATATC-TGTC-AC--GTCCTT-GTATGT-ATGAAACA--AAAG-GCTGACA--TTCCT-CCTGAACCATTGTTTTGGAA-CTCCTAAACT------------GACAAACCTGCTTCCAGAA--------CACCAACAGA--ATG-TTATTTTAATCAGCAAGTTCCGCAGAGCAA-GCACC------AGA--AGCACATTGGTGG-----CAAAG--TC-A---CATCTA--------------C-A--------ATC-------------------CTGGCAACAAACTAAGTA-TTGTC-AGGTCAGTTTAATAC-AAGAATCTAAGCCTCAGTGGAAGaggattctgaacagtcagcacaatcgcacttatcagatgatgaccagcaacagtaattataccaacagaactattggattttttacacaaacctacagtaactagtggaaaataaccataccattcacataactttggaagtgaataatttggaagcagattccccggtgtctccctatgtagcgatatctgtcacgtccttgtatgtatgaaacaaaaggctgacattcctcctgaaccattgttttggaactcctaaactgacaaacctgcttccagaacaccaacagaatgttattttaatcagcaagttccgcagagcaagcaccagaagcacattggtggcaaagtcacatctacaatcctggcaacaaactaagtattgtcaggtcagtttaatacaagaatctaagcctcagtggaagtc
gi|4 : ttcttgttgcaccagaaattactcctaaataaatgtattcccattactaatttgtatgtcgtttccgacttctcgtaacgcggtttcgtagctctgagctgctgatacaacacattttgttgtatttataagctaaggtccagatcaagaattgagaggttgaaaccgatttggaataaagattcttcaaatcgcagcttaagtccaaagcaggtcgtgtgataaggaaagatcagatcttttgggtctttacactattgcgcaacggacaaaaattgtggttttgtttgcattctgggattaactataagacagtcattagggcaaggtgaaatcccggtacatccttgcgacagagcatggtgtgaaacccaggcccacaatcacttaaggattctgaacagtcagcacaatcgcacttatcagatgatga-AAAGGTAT-CCCA-TTACTAAATTTTGTA-GTCAT---TGAGTTCTCGCTTT-GATTATTGTAGTCTTTGGATGAAAATCGCTGTAAACGGACT----------AAGCTGCTG-ATAGCAAC-CATTATGTTTAGTTCATAAGCTAA--TCCAGATTG-GAATGAAG----TGCAAGGA-A---ATCTGGGTGGTAAAAAT-C--CAAATAGGCAGCTTTGAGTCCAGA-TAGATCGTG-TAATA-GGGAGCATACACATAT--TTTT--GGTC-------------TTATCAT---AC---TATT----GTAA-AG-ACAAAA-TC-GATGGTTTTGTTTACATGCTGGA--TGGCCATAA--CAGTCAACAGG-CTACGTTATATCCCGGTACA-TTCC-ATTGCGACAGAT-CATGGTGTGAA-CC-CCAGCAGCACATCC------------------A---------------------C---T------------------------TAC-CAGGATATGACAGCAC----------A---------------T------T-------------TGACAACA-AAACCTGTAGTAA-CATGTGGGGAATGA-CAT-TCATTCTCCAA----TGACATTTGG-GGTTTCG---AATAACGTGGAAGAAGATGTCC---------CCTACATA-TG-ATCTCAATTC-ACA-GTCCTCAGCTTGT-ATG-AAAA-GAAAGGGAGGACATTATCCTCCCTGGACCA--GTTTTGGTATATCCTAAATTTGACA----ACTGACAAACCCGCTT-CACAACATTTTGTAACCAAT---AGCTG-T--TTTCAATCAGCATG-TCTTTAGAGCAAGGTACCAGATCTAGACCAGCGT-CTGGTAG-----CAAAG--TA-A---CATC-GC-------------C-A--------G-TATGAACTTAGGTGATCTTGTTGGCAAAGAAT--GGTA--TGTC-AGATCAGTTAATTACAAAGAATC-AATCTCCAGTtc
gi|5 : TTGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCTA-TTACTAAATCTTGTA-GTCGT---CGACTTCTCGTTAG-GATTGTTGTATTCTT-GGATGCAAACCACAGATCACGGGTTCGTATCTCTGATGCTGCTG-ATATCAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-GAATTGAG----TG----GA-A---ATTTGGGTAATTAAAATTC--CAAATTCGCAGCTTTGAGTCCAAA-CTGGTCGTG-TAGTA-AGCGACATACACAT----TTTT--GGTC-------------TT---GT---AC---TATTGC-GGTAA-GG-ACAAAA-TT-GCTGGTTTTGTTTACATTCTGTA--TAACTATAA--CAGTCATTAGG-CAAGGTTGCATCCCGGTACA-TTTC-ATTGCGACAGAG-CATGGTGTGAA-TC-CCAGCAGCGCAT--------------------A---------------------T---TTA----------------------TGC-CA------AACAGGAA----------C---------------T------T-------------TTCTCATACAAACCTAGAGTAA-CAAGTGGGAAATGA-CAT-CCATTCACTAA----TAGCATTTGT-AGT---G---AATAATGTGGAGGCAGATACCCCGGTATAT-CCAATGGA-CG-ATCCCATGTC-ACA-GTCCTCAGCTTGT-ATG-AACA-GAAAGCGCTGACAATTTCCTCCCTGAACCA--GTTTTGGAATTTCCTAACCTTGACA----ACAGACAAACCTGCTT-CACAA--------AACTAAC---ATATG-T--TTTCAATCAGCATG-TCCTCAGAGCAAGGTATC------AGACTAACAT-CTGGTGG-----CAAAG--TC-A---CGTC-A--------------C-A--------G-C-------------------CTGGCAACAAAT--AGTATTTGTC-AGGTCAGTTTAATACAAAGATTC-AAACTCCAGTGGAAG
gi|6 : ATACACAT----TTGT--GGTG-------------TT---ATCATAC---TATTGC-GGCAA-GG-ACAAAA-TC-GCCGGCTTTGTTTACATTCTGGA--TAGCCATAA--CAGTCATCTGG-GAACGTTACATCCCGTTACA-TTCC-ATTGCTACAGAG-CATGGTGTGAA-CCTCCAGCAGCACACCCCTTACCAGACGTGACAGCA---------------------CAGTTTA----------------------TAC-CA------AACAGGAA----------C---------------T------TGT-----------TTTTTGCACAAACCTGGA-TAATCATGTGGGAAATGA-CAC-CCATTCACTAA----TAACATTTGG-GGT---GCAGAATAATGTGGAAACAGATACCCCGGTCTCT-CCTATGTA-CG-ATCTCATGTC-ACA-GTCCTCAGTTTGC-ATG-AACA-GAAAACGCTGACAATTTCCTTCCTGAATCA--GTCTTGGAATCTCCTGACCTTGATA----ACAGACAAACCTGCTT-CACAA--------AACCAACAGAAGATA-T--TTTCAACCAGAATG-TCACCAGAACAAGGCACC------AGACCAGTAT-ATGGTAG-----C-TAG--TC-A---CATC-A--------------CAA--------G-C-------------------CTGGCAACAAAT--GGTATTTGTC-AGGTCAGTTTAACACAAAGACTC-ACGTTCCAGTGG
gi|7 : gtGTTG-ACCAGAATT-A-TCC---AA-AAAGGTAT-CCCA-TTACTAAATGT---A-GTTGT---AGAGTTCTCGATAG-GATTATTGTATTCTT-GGATGCAAACCACA--AAACGGGCTCGTAGCTCTGATGTTGCTG-ATAGCAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-AAATTAAG----TG----GA-G---ATTTGGGTAATAAAAAATC--GAAATCC-CAGATTTGAGTCCAAA-CAGGTCGTG-TAATA-GGCAACATACACAT----TTTT--GGTG-------------TT---TT---AC---CATTGC-GGCAA-GG-ACAAAA-TC-GTT-GTTTTGTTTACATTCTGGA-----------------CATTAGG-CAAGGTTG-ATCCCGGT-CA-TT-C-ATTGCAACAGAATCATGGTGTGAA--C-CCAGCAGCACACCC------------------ATTATCAGATGTGACAGCACATT---TTA----------------------TACGCA------TACAGGAAACTTGTTGGTT---------------T------T-------------TTTTTACACAAACCTGGAGTAA-------------------------CACTGA----TAACATTTGG-AGT---G---AATAATGTGGAAGCAG
gi|8 : TGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCCA-TTGCTAAATGTTGTA-GTCGT---CTATTTCTCGTTAG-GAATATTGTATTCTT-GGATGCAAACCACAGAAAACGGGCTCGTAGCTCTGATGCTGC----TAACAAC-CATTTGGTTTCATTT
gi|8 : AATTAAG----TG----GA-A---ATTTGAGTATTAAA--TTA--CAAATCCCCAGCTCTGAGTCCAAA-CAGGTCGTG-TAATA-GGCAACATTCACAT----TTTT--GGTC-------------TT---AT---AC---TATTGC-GGCAA-GG-ACAAAA-TC-GTTGGTTTTGTTTACATTCTGGA--CAACTATAA--CAGTCATTAGG-CAAGGTTGCATCCCAGTACA-TTCC-ATTGCGACAGAG-CATGGTGTTAA-CC-CCAGCAGCACATCC------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattaagtggaaatttgagtattaaattacaaatccccagctctgagtccaaacaggtcgtgtaataggcaacattcacatttttggtcttatactattgcggcaaggacaaaatcgttggttttgtttacattctggacaactataacagtcattaggcaaggttgcatcccagtacattccattgcgacagagcatggtgttaaccccagcagcacatcc
gi|9 : tgttgaccagaaatatccaaaaaggtatcccattgctaaatgttgtagtcgtctatttctcgttaggaatattgtattcttggatgcaaaccacagaaaacgggctcgtagctctgatgctgctaacaaccatttggtttcatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn---TTA----------------------TAC-CA------AACAGGAA----------C---------------T------TGTTGGTTTTTTTTTTTTTACACAAACCTAGAGTAA-CAAGTGGGAAATGA-CAT-CCATTCACTAA----TAACATTTGG-AGT---G---AATAATATGGAAGTAGATACCCCGGTATCT-CCAATGTA-CG-ATCTCATGTC-ACA-GTCCTCAGCTTGT-ATG-AACA-AAAAGCGCTGACAATT-CCTCCCTGGACCA--GTTTTGGAATCTCCTAAC-TTGATA----ACAAA-AAACCTGCTT-CACAA--------AAC---------AT------TTCAATTAGCATG-TCCTCAGAGCAAGGTACC------AGACTAACAT-CTGGTAG-----CAAAG--TC-A---CGTC-A--------------CAA--------G-C-------------------CTGGCAACAAAT--AGTATTTGTC-AGGTTAGTTTGATACAAAGAATC-AAGCGCCAGTGGAAG
Alignments
lowQualScore : 111 1111 2222222222222 77777777777777777777777777777777777777777777777777777777777777777777777 111111 88888888888888888888888888888888888888888888888 222 1111 44444444 111111 11111 7777777777777777777777777777777777777777777777777
lowQualScore : 5 4 4 333 4 4 4 1 4 777 1 4 4 0 0 3 0 3 55 4 7777 8888 77777 55 22 3 4 4 2222 88 1111111111111 999 555 555 3 3 3 3 3 55 55 4 1 1 4 4 4 55 7 99999999999999999999999999999999999999999999999999999999999999999999999 4 222222 77777777777777777777777777777777777777777777777 5 2 66 4 9 8888 5 4 111 777 1 8 4 4 4 8 4 4 4 4 2 3 55 7777 4 33333333 333 7777 1 4 111111 4 00000 55 4 777 0000000000000000000000000000000000000000000000000 66 1 4 4
lowQualScore : . . . ... . . . . . ... . . . . . . . . .. . .... .... ..... .. .. . . . .... .. ............. ... ... ... . . . . . .. .. . . . . . . .. . ....................................................................... . ...... ............................................... . . .. . . .... . . ... ... . . . . . . . . . . . . .. .... . ........ ... .... . . ...... . ..... .. . ... ................................................. .. . . .
lowQualScore : 0 4 4 999 0 0 0 6 0 000 6 0 0 1 8 6 5 6 55 0 7777 5555 33333 00 55 6 0 0 7777 66 7777777777777 222 888 888 6 6 6 6 6 55 55 4 1 9 4 4 4 66 3 00000000000000000000000000000000000000000000000000000000000000000000000 4 888888 88888888888888888888888888888888888888888888888 0 7 55 0 8 5555 7 0 000 000 2 4 4 4 4 0 0 0 0 0 5 4 55 0000 0 55555555 888 3333 1 4 555555 0 00000 55 0 000 5555555555555555555555555555555555555555555555555 11 9 4 0
consensus : TTGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCCA-TTACTAAATGTTGTA-GTCGT---CGACTTCTCGTTAG-GATTATTGTATTCTT-GGATGCAAACCACAGAAAACGGGCTCGTAGCTCTGATGCTGCTG-ATAACAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-GAATTAAG----TG----GA-A---ATTTGGGTAATAAAAATTC--CAAATCCGCAGCTTTGAGTCCAAA-CAGGTCGTG-TAATA-GGCAACATACACAT----TTTT--GGTC-------------TT---AT---AC---TATTGC-GGCAA-GG-ACAAAA-TC-GTTGGTTTTGTTTACATTCTGGA--TAGCCATAA--CAGTCATCAGG-CAAGGTTGCATCCCGGTACA-TTCC-ATTGCGACAGAG-CATGGTGTGAA-CC-CCAGCAGCACATCC------------------A---------------------C---TTA----------------------TAC-CA------AACAGGAA----------C---------------T------T-------------TTTTTACACAAACCTGGAGTAA-CATGTGGGAAATGA-CAT-CCATTCACTAA----TAACATTTGG-AGT---G---AATAACGTGGAAGCAGATACCCCGGTATCT-CCTATGTA-CG-ATCTCATGTC-ACA-GTCCTCAGCTTGT-ATG-AACA-GAAAGCGCTGACAATTTCCTCCCTGGACCA--GTTTTGGAATCTCCTAACCTTGACA----ACAGACAAACCTGCTT-CACAA--------AACCAACAGAAGATG-T--TTTCAATCAGCATG-TCCTCAGAGCAAGGTACC------AGACCAGCAT-CTGGTGG-----CAAAG--TC-A---CATC-A--------------C-A--------G-C-------------------CTGGCAACAAAT--GGTATTTGTC-AGGTCAGTTTAATACAAAGAATC-AAGCTCCAGTGGAAG
Reference ( family-8621 ) : TTGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCCA-TTACTAAATGTTGTA-GTCGT---CGACTTCTCGTTAG-GATTATTGTATTCTT-GGATGCAAACCACAGAAAACGGGCTCGTAGCTCTGATGCTGCTG-ATAACAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-GAATTAAG----TG----GA-A---ATTTGGGTAATAAAAATTC--CAAATCCGCAGCTTTGAGTCCAAA-CAGGTCGTG-TAATA-GGCAACATACACAT----TTTT--GGTC-------------TT---AT---AC---TATTGC-GGCAA-GG-ACAAAA-TC-GTTGGTTTTGTTTACATTCTGGA--TAGCCATAA--CAGTCATCAGG-CAAGGTTGCATCCCGGTACA-TTCC-ATTGCGACAGAG-CATGGTGTGAA-CC-CCAGCAGCACATCC------------------A---------------------C---TTA----------------------TAC-CA------AACAGGAA----------C---------------T------T-------------TTTTTACACAAACCTGGAGTAA-CATGTGGGAAATGA-CAT-CCATTCACTAA----TAACATTTGG-AGT---G---AATAACGTGGAAGCAGATACCCCGGTATCT-CCTATGTA-CG-ATCTCATGTC-ACA-GTCCTCAGCTTGT-ATG-AACA-GAAAGCGCTGACAATTTCCTCCCTGGACCA--GTTTTGGAATCTCCTAACCTTGACA----ACAGACAAACCTGCTT-CACAA--------AACCAACAGAAGATG-T--TTTCAATCAGCATG-TCCTCAGAGCAAGGTACC------AGACCAGCAT-CTGGTGG-----CAAAG--TC-A---CATC-A--------------C-A--------G-C-------------------CTGGCAACAAAT--GGTATTTGTC-AGGTCAGTTTAATACAAAGAATC-AAGCTCCAGTGGAAG
gi|1 : TGCTG-ACCAGAAAT-A-T-----AA-AAAAGTAG-CCAA-TTACTAAATGTTGTA-GCCGT---CGAGTTCTCTTTAG-GATTATTGTATTCTT-TGATGCAAACCACAGTAAACGGGATCGTAGTTCTCATGCTGCTG-ATAACAAC-CATTTTGTTTCATTTATAAGGTAG--CCCATATCG-GAATTAAG----TG----GA-G---ATTTGGGTAATAGAAATTC--TAAATCTGCAGATTTGAGTCCAAA-TAGGTCGCG-TATTA-GACAACATACACAT----TTGT--GGTCAGTTGTGGTCTTATC---AT---AC---TATTGC-GACAA-GG-ACAAAA-TC-GCTGGTTTTGTTTACATTCTGGA--TAGCCATAA--CAGTCATCAGG-CAACGTCACATCCCATTACA-TTCC-ATTGCAACAGAG-CAGGGTGCGAACCC-CCAGCAGCACATCC------------------A---------------------C---TTACTAGACAAGACAGCACAGTTTATAC-CA------AACAGGAA----------C---------------TTGC---T-------------TTTTTGCACAAACCCGGAGTAA-CACGTGGGAAATTA-CAT-CCATTCACTAA----TAACATTTGA-AGTACAG---ACTAATGTGGACGCAGATGCCCTGGTATAT-ACTATGTA-CG-ATCTCATGTC-ACA-GTCCTCAGCTTGT-ATG-AACA-GAAAACGCTGACAATTTCTTCTCTGAAGCA--ATTTTGAAATCCCCTGACCTTGACA----ACAGACAAACCTGCTT-CTCAA--------CACCAACAGAAGATG-T--TTTCAA------------TCAGAACAAGGTATC------AGACCAGCAT-CTGGTGGAAAAACAAGGTATC-AGACCATC-ATCTGCTGGAAAAGTC-AAATCACGAG-T-------------------CTGGCTACAAAT--GGTATTTGTC-AGGTCAGTTAAATACAACGAATC-TAGC
gi|10 : TTGTAATCTT-GAATGCAAACCACAGAAAACGTGCTCGTAGCTCTGATGATGCTG-ATAACAAC-CATTTTGTTTAATTCATAAGGTAA--CCCAGATCG-GAATTAAG----TG----GAGA---ATTTGGGTAATAAAAATTC--CAAATCCTCAGCTTTGAGTCCAAA-CAGGTCGTG-TGATA-GGCAACATACACAG----TTTT--GGTC-------------TT---AT---TC---TATTAC-GGCAA-GG-ACAAAA-TC-GTTGGTTTTGTTTTCATTCTGGA--TAACTGTAA--CAGTCATTAGG-CAAGGTTGTATCCCGGTACA-TTCC-ATTGCGACAGAG-CATGGTGTGAA-CC-TCAGCAGCACATCC------------------A---------------------T---T------------------------TAC-CA------GA
gi|11 : ATGCC-ACA-GTCCTCAGCTTTC-ATG-AACA-AAAAGCGATGTCAATTTCCTCCAT---------TTTTGGAATCTCCCGACCTTGACA----ACAGACAAACCTGCTT-CACAA--------AACCAACAGAACATG----TTTCAATCGAAATG-TCCTCAGAGCAAGGTACC------AGACCAGCAT-CTGGTAG-----CAAAA--TT-A---CATC-A--------------CAA--------G-C-------------------CCGACAACAAAT--GGTATTTGAC-AGTTCAGTTTAATACAAAGAGTC-AAGCTCCAGTGGAAGtgtgacgtacagcgcagt
gi|12 : TAG-GATTATTGTATTCTT-GGATGCAAACCATAGAAA-CGGGCTCGTAGGTCTGATGCTGCTA-ATAACAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-GAATTAAG----TG----GG-A---ATTTGGGTAATAAAAATTC--CAAATCCGCAGCTTTGAGTCCAAA-CAGGCTGTG-CAATA-GGCAACATACAAAT----TTTT--GGTC-------------TT---AT---AC---TATTGC-GACAA-GG-ATAAAA-TA-GTTGGTTTTGTTTACATT
gi|13 : TGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCCA-TTACTAAATGTTGTA-GCCGG---CGACTTCCCCTTAG-GAATATTGTTTTCTT-GGATGCAAACCACAGGGAACGGGCTCGTAGTTCTCATGCTGCTG-ATAACAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-G------------------------ATTTGGGTAACACAAATTC--CAAATCCGCAGATTTGAGTCCAAA-CAGGTCGT
gi|14 : cATGTGGGGGATGG-AAT-CCATTCAC-AA----TAAC-------------G---AATGACGTGAACACAGATACAT--GTATCT-CTTTTGTT-CG-ATCTCATGTCCACA-GTCCACAGCTTGA-ATG-AAAA-GAAAACGATGGC-ATTTTCTCCCTGGACCA--GGTTTGATATTTCCTAACCTTGACAATGTACAGACAAA-CTGCTT-CACAGAATTTTGTAACCTACAGAAGATG-T--TTTCAATC
gi|15 : aATGTGGGGGATGG-AAT-CCATTCAC-AA----TAAC-------------G---AATGACGTGAACACAGATACAT--GTATCT-CTTTTGTT-CG-ATCTCATGTCCACA-GTCCACAGCTTGA-ATG-AAAA-GAAA-CA-TGGCA--TTTCTCCCTGGACCA--GGTTTGATATTTCCTAACCTTGACAATGTACAGACAAAC--GCTT-CACAGAATTTTGTAACCTACAGAAGATG-T--TTTCAATC
gi|16 : aTGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCCA-TTACTGAATGTTGTA-GTCGT---CGACTTCTTGTTAA-GATTATTGTATTCTT-GAATACAAACCACAAAAA--GGGCTCGTAGCTCTGATGCTGCTG-ATAACAAC-CATTTTGTTTAATTTACAATGTAA--CCCATATCG-GAATTAAG----
gi|17 : --TTTCAATCAGCATG-TCCTCAGAGCAAGGTACT------AGACCAACAT-C-------------AAA--TA-A---CA--------------------A--------G-C-------------------CTGGCAACAAAT--AGTATTTGTC-AGGTCAGTTTAATACAAAGAATC-AAGCTCCAATGGAga
gi|18 : TTGTTG-ACCA--AAT-A-TC----AA-ACCGGTAT-CCCAATTACTAA--GTTGTA-GTC-T---CGACTTCTCGTTAGTGATTAcgtcc
gi|19 : A-A---ATTTAG-TAAGAAAGAATT--CAGGTCAACAGCTCTGGGTCGAGG-TAGATCAGG-TAACA-GGAAACAAACATATATTTTTTT--GGCC-------------TA---AT---ACAGGTATTGaatttcagtatggcgtcgtgacgacgcaccac
gi|2 : CAGAAAT-A-TCCCAAAA-AAAGATAT-CCTA-TT-CTAAATATTGTA-GTTGT---TGAGTTCTCATTAG-GATTATTGTATTCCT-G-ATGCAAACCACAGAAAACGGGCTCGTAGCTCTCATGCTGCTGAATAA-AAC-CATTTTCTTTATTTTATAAGTTAA--CCCAGATCG-GAATTAAG----TG----AA-G---ACT--GGTAATAAAAATTA--CACATTCACAGCTTTGAGTCCAAA-CAGGTCGTGTTAATA-GGCAACATACACAT----TTTCA-AATCT------------TT---AT---AC---TTATGCGGGCAA-GG-ACAAAA-TC-GTTGGCTTTGTTT-TATTCTGGA--TAG-CATAA--CAGTCATCAGG-C-ACGTTGCATCCCGGTACAGTTCCAATTGCGACAGAA-CATGGTGTGAA-CCTCCAGCAGCACATCG------------------A---------------------C---TTA----------------------
gi|2 : TGTGA------CAGCAACA-----------------------G---------------------T---TTA----------------------TAC-CA------AACAGGAA----------CTTGATTTGGTTTGTTT------T-------------TTTTTACACAAATCTGGAGTAA-CATGTGGGAAATAA--AT-TCATTCACAAATATGTAACATTTGG-AGTTCAA---AATAATGTGGAAGCAGATGCCCCGGCATCT-CCTATTTA-CGAATCTAATGTC-ACACGTCCTCGCCTTGTAATA-AACATAAAAGCGCTGACAATTTCATCCCTGGACCA--GTTTTGGAATCTCATGACCTTGACA----ACAGACAAACCTGCTT-CACAA--------AACCAACAG-AGACGTT--TTTCTATCAAAATA-TCCCTAGAGC-AGGCACC------AGACCAGCAT-CTGGTGG-----CAAAG--TCGA---TCTC-A----------------A--------G-T-------------------CTGGCAACAAAT--GATATTTGTCAAGGTCAGTTTAACACAAAGAAT--AAGCTACGGTGGAAGctatatatatgtgacagcaacagtttataccaaacaggaacttgatttggtttgtttttttttacacaaatctggagtaacatgtgggaaataaattcattcacaaatatgtaacatttggagttcaaaataatgtggaagcagatgccccggcatctcctatttacgaatctaatgtcacacgtcctcgccttgtaataaacataaaagcgctgacaatttcatccctggaccagttttggaatctcatgaccttgacaacagacaaacctgcttcacaaaaccaacagagacgtttttctatcaaaatatccctagagcaggcaccagaccagcatctggtggcaaagtcgatctcaagtctggcaacaaatgatatttgtcaaggtcagtttaacacaaagaataagctacggtggaagtcc
gi|20 : cagaaatatcccaaaaaaagatatcctattctaaatattgtagttgttgagttctcattaggattattgtattcctgatgcaaaccacagaaaacgggctcgtagctctcatgctgctgaataaaaccattttctttattttataagttaacccagatcggaattaagtgaagactggtaataaaaattacacattcacagctttgagtccaaacaggtcgtgttaataggcaacatacacattttcaaatctttatacttatgcgggcaaggacaaaatcgttggctttgttttattctggatagcataacagtcatcaggcacgttgcatcccggtacagttccaattgcgacagaacatggtgtgaacctccagcagcacatcgacttactatatataC-------------TC---AT---AC---TATTGC-GGCAA-GGGACAAAA-TCAGCCGGCTTTGTTTACATTCTGGA--TAGCCAT-A--CAGTCAtcc
gi|21 : TCAGAGCAAGGTACC------AAACCAGCAT-CTGTTGG-----CAAAG--TC-A---TATC-G--------------C-
gi|22 : tcgccagtctgTTGAATACAAAGAGTC-AAGCTCCAGTGGAAGcagt
gi|3 : TTGTTGCACCAGAAATTACTCCTA-AATAAATGTATTCCCA-TTACT-AAT-TTGTATGTCGTTTCCGACTTCTCGTtccaagac
gi|3 : ttcCGGTTTCGTAGCTCTGA-GCTGCTG-ATA-CAACACATTTTGTTGTATTTATAAGCTAAGGTCCAGATCAAGAATTGAGAGGTTG----AA-ACCGATTTGG--AATAAAGATTCTTCAAATC-GCAGCTT-AAGTCCAAAGCAGGTCGTG-TGATAAGGAAAGAT-CAGAT----CTTTTGGGTC-------------TTT--AC---AC---TATTGC-G-CAACGG-ACAAAAATT-GT-GGTTTTGTTTGCATTCTGGGATTAACTATAAGACAGTCATTAGGGCAAGGTGAAATCCCGGTACA-TCC---TTGCGACAGAG-CATGGTGTGAA-AC-CCAGGCCCACAATC------------------A---------------------C---TTA----------------------aacgcggtttcgtagctctgagctgctgatacaacacattttgttgtatttataagctaaggtccagatcaagaattgagaggttgaaaccgatttggaataaagattcttcaaatcgcagcttaagtccaaagcaggtcgtgtgataaggaaagatcagatcttttgggtctttacactattgcgcaacggacaaaaattgtggttttgtttgcattctgggattaactataagacagtcattagggcaaggtgaaatcccggtacatccttgcgacagagcatggtgtgaaacccaggcccacaatcacttaaggattctgaacagtcagcacaatcgcacttatcagatgatgaccagcaacagtaattataccaacagaactattggattttttacacaaacctacagtaactagtggaaaataaccataccattcacataactttggaagtgaataatttggaagcagattccccggtgtctccctatgtagcgatatctgtcacgtccttgtatgtatgaaacaaaaggctgacattcctcctgaaccattgttttggaactcctaaactgacaaacctgcttccagaacaccaacagaatgttattttaatcagcaagttccgcagagcaagcaccagaagcacattggtggcaaagtcacatctacaatcctggcaacaaactaagtattgtcaggtcagtttaatacaagaatctaagcctcagtggaagtc
gi|3 : ttcttgttgcaccagaaattactcctaaataaatgtattcccattactaatttgtatgtcgtttccgacttctcgtaacg-CCAGCAACA-GT--------------------A---------------------A---TTA----------------------TAC-CA------A-CAG-AA----------C---------------TATTGGAT-------------TTTTTACACAAACCTACAGTAA-CTAGTGGAAAATAACCATACCATTCAC--A----TAAC-TTTGGAAGT---G---AATAATTTGGAAGCAGATTCCCCGGTGTCTCCCTATGTAGCG-ATATC-TGTC-AC--GTCCTT-GTATGT-ATGAAACA--AAAG-GCTGACA--TTCCT-CCTGAACCATTGTTTTGGAA-CTCCTAAACT------------GACAAACCTGCTTCCAGAA--------CACCAACAGA--ATG-TTATTTTAATCAGCAAGTTCCGCAGAGCAA-GCACC------AGA--AGCACATTGGTGG-----CAAAG--TC-A---CATCTA--------------C-A--------ATC-------------------CTGGCAACAAACTAAGTA-TTGTC-AGGTCAGTTTAATAC-AAGAATCTAAGCCTCAGTGGAAGaggattctgaacagtcagcacaatcgcacttatcagatgatgaccagcaacagtaattataccaacagaactattggattttttacacaaacctacagtaactagtggaaaataaccataccattcacataactttggaagtgaataatttggaagcagattccccggtgtctccctatgtagcgatatctgtcacgtccttgtatgtatgaaacaaaaggctgacattcctcctgaaccattgttttggaactcctaaactgacaaacctgcttccagaacaccaacagaatgttattttaatcagcaagttccgcagagcaagcaccagaagcacattggtggcaaagtcacatctacaatcctggcaacaaactaagtattgtcaggtcagtttaatacaagaatctaagcctcagtggaagtc
gi|4 : ttcttgttgcaccagaaattactcctaaataaatgtattcccattactaatttgtatgtcgtttccgacttctcgtaacgcggtttcgtagctctgagctgctgatacaacacattttgttgtatttataagctaaggtccagatcaagaattgagaggttgaaaccgatttggaataaagattcttcaaatcgcagcttaagtccaaagcaggtcgtgtgataaggaaagatcagatcttttgggtctttacactattgcgcaacggacaaaaattgtggttttgtttgcattctgggattaactataagacagtcattagggcaaggtgaaatcccggtacatccttgcgacagagcatggtgtgaaacccaggcccacaatcacttaaggattctgaacagtcagcacaatcgcacttatcagatgatga-AAAGGTAT-CCCA-TTACTAAATTTTGTA-GTCAT---TGAGTTCTCGCTTT-GATTATTGTAGTCTTTGGATGAAAATCGCTGTAAACGGACT----------AAGCTGCTG-ATAGCAAC-CATTATGTTTAGTTCATAAGCTAA--TCCAGATTG-GAATGAAG----TGCAAGGA-A---ATCTGGGTGGTAAAAAT-C--CAAATAGGCAGCTTTGAGTCCAGA-TAGATCGTG-TAATA-GGGAGCATACACATAT--TTTT--GGTC-------------TTATCAT---AC---TATT----GTAA-AG-ACAAAA-TC-GATGGTTTTGTTTACATGCTGGA--TGGCCATAA--CAGTCAACAGG-CTACGTTATATCCCGGTACA-TTCC-ATTGCGACAGAT-CATGGTGTGAA-CC-CCAGCAGCACATCC------------------A---------------------C---T------------------------TAC-CAGGATATGACAGCAC----------A---------------T------T-------------TGACAACA-AAACCTGTAGTAA-CATGTGGGGAATGA-CAT-TCATTCTCCAA----TGACATTTGG-GGTTTCG---AATAACGTGGAAGAAGATGTCC---------CCTACATA-TG-ATCTCAATTC-ACA-GTCCTCAGCTTGT-ATG-AAAA-GAAAGGGAGGACATTATCCTCCCTGGACCA--GTTTTGGTATATCCTAAATTTGACA----ACTGACAAACCCGCTT-CACAACATTTTGTAACCAAT---AGCTG-T--TTTCAATCAGCATG-TCTTTAGAGCAAGGTACCAGATCTAGACCAGCGT-CTGGTAG-----CAAAG--TA-A---CATC-GC-------------C-A--------G-TATGAACTTAGGTGATCTTGTTGGCAAAGAAT--GGTA--TGTC-AGATCAGTTAATTACAAAGAATC-AATCTCCAGTtc
gi|5 : TTGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCTA-TTACTAAATCTTGTA-GTCGT---CGACTTCTCGTTAG-GATTGTTGTATTCTT-GGATGCAAACCACAGATCACGGGTTCGTATCTCTGATGCTGCTG-ATATCAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-GAATTGAG----TG----GA-A---ATTTGGGTAATTAAAATTC--CAAATTCGCAGCTTTGAGTCCAAA-CTGGTCGTG-TAGTA-AGCGACATACACAT----TTTT--GGTC-------------TT---GT---AC---TATTGC-GGTAA-GG-ACAAAA-TT-GCTGGTTTTGTTTACATTCTGTA--TAACTATAA--CAGTCATTAGG-CAAGGTTGCATCCCGGTACA-TTTC-ATTGCGACAGAG-CATGGTGTGAA-TC-CCAGCAGCGCAT--------------------A---------------------T---TTA----------------------TGC-CA------AACAGGAA----------C---------------T------T-------------TTCTCATACAAACCTAGAGTAA-CAAGTGGGAAATGA-CAT-CCATTCACTAA----TAGCATTTGT-AGT---G---AATAATGTGGAGGCAGATACCCCGGTATAT-CCAATGGA-CG-ATCCCATGTC-ACA-GTCCTCAGCTTGT-ATG-AACA-GAAAGCGCTGACAATTTCCTCCCTGAACCA--GTTTTGGAATTTCCTAACCTTGACA----ACAGACAAACCTGCTT-CACAA--------AACTAAC---ATATG-T--TTTCAATCAGCATG-TCCTCAGAGCAAGGTATC------AGACTAACAT-CTGGTGG-----CAAAG--TC-A---CGTC-A--------------C-A--------G-C-------------------CTGGCAACAAAT--AGTATTTGTC-AGGTCAGTTTAATACAAAGATTC-AAACTCCAGTGGAAG
gi|6 : ATACACAT----TTGT--GGTG-------------TT---ATCATAC---TATTGC-GGCAA-GG-ACAAAA-TC-GCCGGCTTTGTTTACATTCTGGA--TAGCCATAA--CAGTCATCTGG-GAACGTTACATCCCGTTACA-TTCC-ATTGCTACAGAG-CATGGTGTGAA-CCTCCAGCAGCACACCCCTTACCAGACGTGACAGCA---------------------CAGTTTA----------------------TAC-CA------AACAGGAA----------C---------------T------TGT-----------TTTTTGCACAAACCTGGA-TAATCATGTGGGAAATGA-CAC-CCATTCACTAA----TAACATTTGG-GGT---GCAGAATAATGTGGAAACAGATACCCCGGTCTCT-CCTATGTA-CG-ATCTCATGTC-ACA-GTCCTCAGTTTGC-ATG-AACA-GAAAACGCTGACAATTTCCTTCCTGAATCA--GTCTTGGAATCTCCTGACCTTGATA----ACAGACAAACCTGCTT-CACAA--------AACCAACAGAAGATA-T--TTTCAACCAGAATG-TCACCAGAACAAGGCACC------AGACCAGTAT-ATGGTAG-----C-TAG--TC-A---CATC-A--------------CAA--------G-C-------------------CTGGCAACAAAT--GGTATTTGTC-AGGTCAGTTTAACACAAAGACTC-ACGTTCCAGTGG
gi|7 : gtGTTG-ACCAGAATT-A-TCC---AA-AAAGGTAT-CCCA-TTACTAAATGT---A-GTTGT---AGAGTTCTCGATAG-GATTATTGTATTCTT-GGATGCAAACCACA--AAACGGGCTCGTAGCTCTGATGTTGCTG-ATAGCAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-AAATTAAG----TG----GA-G---ATTTGGGTAATAAAAAATC--GAAATCC-CAGATTTGAGTCCAAA-CAGGTCGTG-TAATA-GGCAACATACACAT----TTTT--GGTG-------------TT---TT---AC---CATTGC-GGCAA-GG-ACAAAA-TC-GTT-GTTTTGTTTACATTCTGGA-----------------CATTAGG-CAAGGTTG-ATCCCGGT-CA-TT-C-ATTGCAACAGAATCATGGTGTGAA--C-CCAGCAGCACACCC------------------ATTATCAGATGTGACAGCACATT---TTA----------------------TACGCA------TACAGGAAACTTGTTGGTT---------------T------T-------------TTTTTACACAAACCTGGAGTAA-------------------------CACTGA----TAACATTTGG-AGT---G---AATAATGTGGAAGCAG
gi|8 : TGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCCA-TTGCTAAATGTTGTA-GTCGT---CTATTTCTCGTTAG-GAATATTGTATTCTT-GGATGCAAACCACAGAAAACGGGCTCGTAGCTCTGATGCTGC----TAACAAC-CATTTGGTTTCATTT
gi|8 : AATTAAG----TG----GA-A---ATTTGAGTATTAAA--TTA--CAAATCCCCAGCTCTGAGTCCAAA-CAGGTCGTG-TAATA-GGCAACATTCACAT----TTTT--GGTC-------------TT---AT---AC---TATTGC-GGCAA-GG-ACAAAA-TC-GTTGGTTTTGTTTACATTCTGGA--CAACTATAA--CAGTCATTAGG-CAAGGTTGCATCCCAGTACA-TTCC-ATTGCGACAGAG-CATGGTGTTAA-CC-CCAGCAGCACATCC------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattaagtggaaatttgagtattaaattacaaatccccagctctgagtccaaacaggtcgtgtaataggcaacattcacatttttggtcttatactattgcggcaaggacaaaatcgttggttttgtttacattctggacaactataacagtcattaggcaaggttgcatcccagtacattccattgcgacagagcatggtgttaaccccagcagcacatcc
gi|9 : tgttgaccagaaatatccaaaaaggtatcccattgctaaatgttgtagtcgtctatttctcgttaggaatattgtattcttggatgcaaaccacagaaaacgggctcgtagctctgatgctgctaacaaccatttggtttcatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn---TTA----------------------TAC-CA------AACAGGAA----------C---------------T------TGTTGGTTTTTTTTTTTTTACACAAACCTAGAGTAA-CAAGTGGGAAATGA-CAT-CCATTCACTAA----TAACATTTGG-AGT---G---AATAATATGGAAGTAGATACCCCGGTATCT-CCAATGTA-CG-ATCTCATGTC-ACA-GTCCTCAGCTTGT-ATG-AACA-AAAAGCGCTGACAATT-CCTCCCTGGACCA--GTTTTGGAATCTCCTAAC-TTGATA----ACAAA-AAACCTGCTT-CACAA--------AAC---------AT------TTCAATTAGCATG-TCCTCAGAGCAAGGTACC------AGACTAACAT-CTGGTAG-----CAAAG--TC-A---CGTC-A--------------CAA--------G-C-------------------CTGGCAACAAAT--AGTATTTGTC-AGGTTAGTTTGATACAAAGAATC-AAGCGCCAGTGGAAG
blockSeqs : C T C CAA T T A G T TTC C T T A A GG A AGGT CAAG ACCG TT CT G T A ATTT TG T ATC CAT AGG G C G A A AT GA G G T G A T C T CCCTTACCAGACGTGACAGCACAGTTTA G GGATAT CTTGATTTGGTTTGTTTT T T CC A A TATG A A TCA CAG C C C G A C C A A T A A TT ATGT C AATTTTGT AGA TTA A T AGATCT A . . G . GCCAGTATGAACTTAGGTGATCTTG TA T A T
blockSeqs : . . . TA . . . G . . C . . . . . . . . GA . CG . . . AT A . T . . . . . . . . . . C C . . . C T CCATTATCAGATGTGACAGCACATTTTA . . CTTGTTGGTTTTTTTT . T A . C . A . TTC . C C . . . C . . . . A A . ATGT . AATTTTGT AGA TT C . . . . . . . TACAATC . T . .
blockSeqs : . . . . . . . G . . C . . . . . . . . A . CG . . . . . . . . . . . . . . . . . G A . . . A . CGACTTA . . ACTTGTTGGTTTT . T A . T . A . . . T C . . . . . . . . C A . . . CATTTTGT AGA T A . . . . . . . ACAAGC . T . .
blockSeqs : . . . . . . . A . . G . . . . . . . . A . AA . . . . . . . . . . . . . . . . . C T . . . C . TCACTTA . . CTATTGGAT . A C . T . A . . . T C . . . . . . . . C T . . . . AGA T C . . . . . . . ACAAGC . T . .
blockSeqs : . . . . . . . T . . C . . . . . . . . G . CA . . . . . . . . . . . . . . . . . G C . . . T . CCATT . . CTTGT . T C . T . A . . . C C . . . . . . . . A A . . . . AGA T C . . . . . . . ACAAGC . T . .
blockSeqs : . . . . . . . C . . G . . . . . . . . A . GG . . . . . . . . . . . . . . . . . C C . . . C . GTTTA . . ATT . A C . T . A . . . T . . . . . . . . . C A . . . . AG T C . . . . . . . ACAGC . T . .
blockSeqs : . . . . . . . G . . C . . . . . . . . A . CG . . . . . . . . . . . . . . . . . G C . . . C . AATTA . . CTT . T C . . . . . . . T . . . . . . . . . C A . . . . . T A . . . . . . . AAGT . . . .
blockSeqs : . . . . . . G . . G . . . . . . . . G . CC . . . . . . . . . . . . . . . . . G . . . . . . CCACT . . A . . . . . . . . T . . . . . . . . . C . . . . . . . C . . . . . . . AGC . . . .
blockSeqs : . . . . . . T . . . . . . . . A . G . . . . . . . . . . . . . . . . . . ATTTA . . . . . . . . . T . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . C . . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqCons : ************* C* CTTGTTGGT************************************** *** ***** ** *** ACAAGC*******************************************
originalCons : TTGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCCA-TTACTAAATGTTGTA-GTCGT---CGACTTCTCGTTAG-GATTATTGTATTCTT-GGATGCAAACCACAGAAAACGGGCTCGTAGCTCTGATGCTGCTG-ATAACAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-GAATTAAG----TG----GA-A---ATTTGGGTAATAAAAATTC--CAAATCCGCAGCTTTGAGTCCAAA-CAGGTCGTG-TAATA-GGCAACATACACAT----TTTT--GGTC-------------TT---AT---AC---TATTGC-GGCAA-GG-ACAAAA-TC-GTTGGTTTTGTTTACATTCTGGA--TAGCCATAA--CAGTCATCAGG-CAAGGTTGCATCCCGGTACA-TTCC-ATTGCGACAGAG-CATGGTGTGAA-CC-CCAGCAGCACATCC------------------A---------------------C---TTA----------------------TAC-CA------AACAGGAA----------C---------------T------T-------------TTTTTACACAAACCTGGAGTAA-CATGTGGGAAATGA-CAT-CCATTCACTAA----TAACATTTGG-AGT---G---AATAACGTGGAAGCAGATACCCCGGTATCT-CCTATGTA-CG-ATCTCATGTC-ACA-GTCCTCAGCTTGT-ATG-AACA-GAAAGCGCTGACAATTTCCTCCCTGGACCA--GTTTTGGAATCTCCTAACCTTGACA----ACAGACAAACCTGCTT-CACAA--------AACCAACAGAAGATG-T--TTTCAATCAGCATG-TCCTCAGAGCAAGGTACC------AGACCAGCAT-CTGGTGG-----CAAAG--TC-A---CATC-A--------------C-A--------G-C-------------------CTGGCAACAAAT--GGTATTTGTC-AGGTCAGTTTAATACAAAGAATC-AAGCTCCAGTGGAAG
finalCons : TTGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCCA-TTACTAAATGTTGTA-GTCGT---CGACTTCTCGTTAG-GATTATTGTATTCTT-GGATGCAAACCACAGAAAACGGGCTCGTAGCTCTGATGCTGCTG-ATAACAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-GAATTAAG----TG----GA-A---ATTTGGGTAATAAAAATTC--CAAATCCGCAGCTTTGAGTCCAAA-CAGGTCGTG-TAATA-GGCAACATACACAT----TTTT--GGTC-------------TT---AT---AC---TATTGC-GGCAA-GG-ACAAAA-TC-GTTGGTTTTGTTTACATTCTGGA--TAGCCATAA--CAGTCATCAGG-CAAGGTTGCATCCCGGTACA-TTCC-ATTGCGACAGAG-CATGGTGTGAAC-C-CCAGCAGCACATCC------------------A---------------------C---TTA----------------------TAC-CA------AACAGGAACTTGTTGGT--------------------------------------TTTTTACACAAACCTGGAGTAA-CATGTGGGAAATGA-CAT-CCATTCACTAA----TAACATTTGG-AGT---G---AATAACGTGGAAGCAGATACCCCGGTATCT-CCTATGTA-CG-ATCTCATGTC-ACA-GTCCTCAGCTTGT-ATG-AACA-GAAAGCGCTGACAATTTCCTCCCTGGACCA--GTTTTGGAATCTCCTAACCTTGACA----ACAGACAAACCTGCTT-CACAA--------AACCAACAGAAGATG-T--TTTCAATCAGCATG-TCCTCAGAGCAAGGTACC------AGACCAGCAT-CTGGTGG-----CAAAG--TC-A---CATCACAAGC-------------------------------------------CTGGCAACAAAT--GGTATTTGTC-AGGTCAGTTTAATACAAAGAATC-AAGCTCCAGTGGAAG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 1111 2222222222222 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1111111 222 1111 44444444 111111 11111 4444444444444444444444444444444444444444444444
lowQualScore : 5 4 4 333 4 4 4 1 4 777 1 4 4 0 0 3 0 3 55 4 7777 8888 77777 55 22 3 4 4 2222 88 1111111111111 999 555 555 3 3 3 3 3 55 55 4 1 1 4 4 4 44 8 1 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 6666666 5 2 66 4 9 8888 5 4 111 777 1 8 4 4 4 8 4 4 4 4 2 3 55 7777 4 33333333 333 4 55 1 4 111111 4 00000 55 777 0000000000000000000000000000000000000000000000 66 1 4 4
lowQualScore : . . . ... . . . . . ... . . . . . . . . .. . .... .... ..... .. .. . . . .... .. ............. ... ... ... . . . . . .. .. . . . . . . .. . . ................................................................................................................................... ....... . . .. . . .... . . ... ... . . . . . . . . . . . . .. .... . ........ ... . .. . . ...... . ..... .. ... .............................................. .. . . .
lowQualScore : 0 4 4 999 0 0 0 6 0 000 6 0 0 1 8 6 5 6 55 0 7777 5555 33333 00 55 6 0 0 7777 66 7777777777777 222 888 888 6 6 6 6 6 55 55 4 1 9 4 4 4 66 0 6 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2222222 0 7 55 0 8 5555 7 0 000 000 2 4 4 4 4 0 0 0 0 0 5 4 55 0000 0 55555555 888 0 00 1 4 555555 0 00000 55 000 1111111111111111111111111111111111111111111111 11 9 4 0
consensus : TTGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCCA-TTACTAAATGTTGTA-GTCGT---CGACTTCTCGTTAG-GATTATTGTATTCTT-GGATGCAAACCACAGAAAACGGGCTCGTAGCTCTGATGCTGCTG-ATAACAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-GAATTAAG----TG----GA-A---ATTTGGGTAATAAAAATTC--CAAATCCGCAGCTTTGAGTCCAAA-CAGGTCGTG-TAATA-GGCAACATACACAT----TTTT--GGTC-------------TT---AT---AC---TATTGC-GGCAA-GG-ACAAAA-TC-GTTGGTTTTGTTTACATTCTGGA--TAGCCATAA--CAGTCATCAGG-CAAGGTTGCATCCCGGTACA-TTCC-ATTGCGACAGAG-CATGGTGTGAA-CC-CCAGCAGCACATCC------------------A---------------------C---TTA----------------------TAC----------CA------AACA--------------GG-A-ACTTG--TTGG-------TTTTTT-------ACACAAACCTGGAGTAA-CATGTGGGAAATGA-CAT-CCATTCACTAA----TAACATTTGG-AGT---G---AATAACGTGGAAGCAGATACCCCGGTATCT-CCTATGTA-CG-ATCTCATGTC-ACA-GTCCTCAGCTTGT-ATG-AACA-GAAAGCGCTGACAATTTCCTCCCTGGACCA--GTTTTGGAATCTCCTAACCTTGACA----ACAGACAAACCTGCTT-CACAA--------AACCAACAGAAGATG-T--TTTCAATCAGCATG-TCCTCAGAGCAAGGTACC------AGACCAGCAT-CTGGTGG-----CAAAG--TCA---CATC---------------------ACAAGC-------------------CTGGCAACAAAT--GGTATTTGTC-AGGTCAGTTTAATACAAAGAATC-AAGCTCCAGTGGAAG
Reference ( family-8621 ) : TTGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCCA-TTACTAAATGTTGTA-GTCGT---CGACTTCTCGTTAG-GATTATTGTATTCTT-GGATGCAAACCACAGAAAACGGGCTCGTAGCTCTGATGCTGCTG-ATAACAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-GAATTAAG----TG----GA-A---ATTTGGGTAATAAAAATTC--CAAATCCGCAGCTTTGAGTCCAAA-CAGGTCGTG-TAATA-GGCAACATACACAT----TTTT--GGTC-------------TT---AT---AC---TATTGC-GGCAA-GG-ACAAAA-TC-GTTGGTTTTGTTTACATTCTGGA--TAGCCATAA--CAGTCATCAGG-CAAGGTTGCATCCCGGTACA-TTCC-ATTGCGACAGAG-CATGGTGTGAA-CC-CCAGCAGCACATCC------------------A---------------------C---TTA----------------------TAC----------CA------AACA--------------GG-A-ACTTG--TTGG-------TTTTTT-------ACACAAACCTGGAGTAA-CATGTGGGAAATGA-CAT-CCATTCACTAA----TAACATTTGG-AGT---G---AATAACGTGGAAGCAGATACCCCGGTATCT-CCTATGTA-CG-ATCTCATGTC-ACA-GTCCTCAGCTTGT-ATG-AACA-GAAAGCGCTGACAATTTCCTCCCTGGACCA--GTTTTGGAATCTCCTAACCTTGACA----ACAGACAAACCTGCTT-CACAA--------AACCAACAGAAGATG-T--TTTCAATCAGCATG-TCCTCAGAGCAAGGTACC------AGACCAGCAT-CTGGTGG-----CAAAG--TCA---CATC---------------------ACAAGC-------------------CTGGCAACAAAT--GGTATTTGTC-AGGTCAGTTTAATACAAAGAATC-AAGCTCCAGTGGAAG
gi|1 : TGCTG-ACCAGAAAT-A-T-----AA-AAAAGTAG-CCAA-TTACTAAATGTTGTA-GCCGT---CGAGTTCTCTTTAG-GATTATTGTATTCTT-TGATGCAAACCACAGTAAACGGGATCGTAGTTCTCATGCTGCTG-ATAACAAC-CATTTTGTTTCATTTATAAGGTAG--CCCATATCG-GAATTAAG----TG----GA-G---ATTTGGGTAATAGAAATTC--TAAATCTGCAGATTTGAGTCCAAA-TAGGTCGCG-TATTA-GACAACATACACAT----TTGT--GGTCAGTTGTGGTCTTATC---AT---AC---TATTGC-GACAA-GG-ACAAAA-TC-GCTGGTTTTGTTTACATTCTGGA--TAGCCATAA--CAGTCATCAGG-CAACGTCACATCCCATTACA-TTCC-ATTGCAACAGAG-CAGGGTGCGAACCC-CCAGCAGCACATCC------------------A---------------------C---TTACTAGACAAGACAGCACAGTTTATAC----------CA------AACA--------------GG-A-ACTTG--C----------TTTTTT-------GCACAAACCCGGAGTAA-CACGTGGGAAATTA-CAT-CCATTCACTAA----TAACATTTGA-AGTACAG---ACTAATGTGGACGCAGATGCCCTGGTATAT-ACTATGTA-CG-ATCTCATGTC-ACA-GTCCTCAGCTTGT-ATG-AACA-GAAAACGCTGACAATTTCTTCTCTGAAGCA--ATTTTGAAATCCCCTGACCTTGACA----ACAGACAAACCTGCTT-CTCAA--------CACCAACAGAAGATG-T--TTTCAA------------TCAGAACAAGGTATC------AGACCAGCAT-CTGGTGGAAAAACAAGGTATCAGACCATCATCTGCTGGAAAAGTCAAATCACGAGT-------------------CTGGCTACAAAT--GGTATTTGTC-AGGTCAGTTAAATACAACGAATC-TAGC
gi|10 : TTGTAATCTT-GAATGCAAACCACAGAAAACGTGCTCGTAGCTCTGATGATGCTG-ATAACAAC-CATTTTGTTTAATTCATAAGGTAA--CCCAGATCG-GAATTAAG----TG----GAGA---ATTTGGGTAATAAAAATTC--CAAATCCTCAGCTTTGAGTCCAAA-CAGGTCGTG-TGATA-GGCAACATACACAG----TTTT--GGTC-------------TT---AT---TC---TATTAC-GGCAA-GG-ACAAAA-TC-GTTGGTTTTGTTTTCATTCTGGA--TAACTGTAA--CAGTCATTAGG-CAAGGTTGTATCCCGGTACA-TTCC-ATTGCGACAGAG-CATGGTGTGAA-CC-TCAGCAGCACATCC------------------A---------------------T---T------------------------TAC----------CA------GA
gi|11 : ATGCC-ACA-GTCCTCAGCTTTC-ATG-AACA-AAAAGCGATGTCAATTTCCTCCAT---------TTTTGGAATCTCCCGACCTTGACA----ACAGACAAACCTGCTT-CACAA--------AACCAACAGAACATG-T--TT-CAATCGAAATG-TCCTCAGAGCAAGGTACC------AGACCAGCAT-CTGGTAG-----CAAAA--TTA---CATC---------------------ACAAGC-------------------CCGACAACAAAT--GGTATTTGAC-AGTTCAGTTTAATACAAAGAGTC-AAGCTCCAGTGGAAGtgtgacgtacagcgcagt
gi|12 : TAG-GATTATTGTATTCTT-GGATGCAAACCATAGAAA-CGGGCTCGTAGGTCTGATGCTGCTA-ATAACAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-GAATTAAG----TG----GG-A---ATTTGGGTAATAAAAATTC--CAAATCCGCAGCTTTGAGTCCAAA-CAGGCTGTG-CAATA-GGCAACATACAAAT----TTTT--GGTC-------------TT---AT---AC---TATTGC-GACAA-GG-ATAAAA-TA-GTTGGTTTTGTTTACATT
gi|13 : TGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCCA-TTACTAAATGTTGTA-GCCGG---CGACTTCCCCTTAG-GAATATTGTTTTCTT-GGATGCAAACCACAGGGAACGGGCTCGTAGTTCTCATGCTGCTG-ATAACAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-G------------------------ATTTGGGTAACACAAATTC--CAAATCCGCAGATTTGAGTCCAAA-CAGGTCGT
gi|14 : cATGTGGGGGATGG-AAT-CCATTCAC-AA----TAAC-------------G---AATGACGTGAACACAGATACAT--GTATCT-CTTTTGTT-CG-ATCTCATGTCCACA-GTCCACAGCTTGA-ATG-AAAA-GAAAACGATGGC-ATTTTCTCCCTGGACCA--GGTTTGATATTTCCTAACCTTGACAATGTACAGACAAA-CTGCTT-CACAGAATTTTGTAACCTACAGAAGATG-T--TTTCAATC
gi|15 : aATGTGGGGGATGG-AAT-CCATTCAC-AA----TAAC-------------G---AATGACGTGAACACAGATACAT--GTATCT-CTTTTGTT-CG-ATCTCATGTCCACA-GTCCACAGCTTGA-ATG-AAAA-GAAA-CA-TGGCA--TTTCTCCCTGGACCA--GGTTTGATATTTCCTAACCTTGACAATGTACAGACAAAC--GCTT-CACAGAATTTTGTAACCTACAGAAGATG-T--TTTCAATC
gi|16 : aTGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCCA-TTACTGAATGTTGTA-GTCGT---CGACTTCTTGTTAA-GATTATTGTATTCTT-GAATACAAACCACAAAAA--GGGCTCGTAGCTCTGATGCTGCTG-ATAACAAC-CATTTTGTTTAATTTACAATGTAA--CCCATATCG-GAATTAAG----
gi|17 : --TTTCAATCAGCATG-TCCTCAGAGCAAGGTACT------AGACCAACAT-------------CAA-----------ATA---------------------ACAAGC-------------------CTGGCAACAAAT--AGTATTTGTC-AGGTCAGTTTAATACAAAGAATC-AAGCTCCAATGGAga
gi|18 : TTGTTG-ACCA--AAT-A-TC----AA-ACCGGTAT-CCCAATTACTAA--GTTGTA-GTC-T---CGACTTCTCGTTAGTGATTAcgtcc
gi|19 : A-A---ATTTAG-TAAGAAAGAATT--CAGGTCAACAGCTCTGGGTCGAGG-TAGATCAGG-TAACA-GGAAACAAACATATATTTTTTT--GGCC-------------TA---AT---ACAGGTATTGaatttcagtatggcgtcgtgacgacgcaccac
gi|2 : CAGAAAT-A-TCCCAAAA-AAAGATAT-CCTA-TT-CTAAATATTGTA-GTTGT---TGAGTTCTCATTAG-GATTATTGTATTCCT-G-ATGCAAACCACAGAAAACGGGCTCGTAGCTCTCATGCTGCTGAATAA-AAC-CATTTTCTTTATTTTATAAGTTAA--CCCAGATCG-GAATTAAG----TG----AA-G---ACT--GGTAATAAAAATTA--CACATTCACAGCTTTGAGTCCAAA-CAGGTCGTGTTAATA-GGCAACATACACAT----TTTCA-AATCT------------TT---AT---AC---TTATGCGGGCAA-GG-ACAAAA-TC-GTTGGCTTTGTTT-TATTCTGGA--TAG-CATAA--CAGTCATCAGG-C-ACGTTGCATCCCGGTACAGTTCCAATTGCGACAGAA-CATGGTGTGAA-CCTCCAGCAGCACATCG------------------A---------------------C---TTAC---------------------TATATATATGTGACAGC----AACAGTTTATACCAAACAGG-A-ACTTGATTTGGTTTGTTTTTTTTT-------ACACAAATCTGGAGTAA-CATGTGGGAAATAA--AT-TCATTCACAAATATGTAACATTTGG-AGTTCAA---AATAATGTGGAAGCAGATGCCCCGGCATCT-CCTATTTA-CGAATCTAATGTC-ACACGTCCTCGCCTTGTAATA-AACATAAAAGCGCTGACAATTTCATCCCTGGACCA--GTTTTGGAATCTCATGACCTTGACA----ACAGACAAACCTGCTT-CACAA--------AACCAACAG-AGACGTT--TTTCTATCAAAATA-TCCCTAGAGC-AGGCACC------AGACCAGCAT-CTGGTGG-----CAAAG--TCG----ATC---------------------TCAAGT-------------------CTGGCAACAAAT--GATATTTGTCAAGGTCAGTTTAACACAAAGAAT--AAGCTACGGTGGAAG
gi|20 : C-------------TC---AT---AC---TATTGC-GGCAA-GGGACAAAA-TCAGCCGGCTTTGTTTACATTCTGGA--TAGCCAT-A--CAGTCAtcc
gi|21 : TCAGAGCAAGGTACC------AAACCAGCAT-CTGTTGG-----CAAAG--TCA---TATC---------------------GCCAG
gi|22 : tcgccagtctgTTGAATACAAAGAGTC-AAGCTCCAGTGGAAGt
gi|3 : TTGTTGCACCAGAAATTACTCCTA-AATAAATGTATTCCCA-TTACT-AAT-TTGTATGTCGTTTCCGACTTCTCGTtccaagac
gi|3 : ttcCGGTTTCGTAGCTCTGA-GCTGCTG-ATA-CAACACATTTTGTTGTATTTATAAGCTAAGGTCCAGATCAAGAATTGAGAGGTTG----AA-ACCGATTTGG--AATAAAGATTCTTCAAATC-GCAGCTT-AAGTCCAAAGCAGGTCGTG-TGATAAGGAAAGAT-CAGAT----CTTTTGGGTC-------------TTT--AC---AC---TATTGC-G-CAACGG-ACAAAAATT-GT-GGTTTTGTTTGCATTCTGGGATTAACTATAAGACAGTCATTAGGGCAAGGTGAAATCCCGGTACA-TCC---TTGCGACAGAG-CATGGTGTGAA-AC-CCAGGCCCACAATC------------------A---------------------C---TTA----------------------aacgcggtttcgtagctctgagctgctgatacaacacattttgttgtatttataagctaaggtccagatcaagaattgagaggttgaaaccgatttggaataaagattcttcaaatcgcagcttaagtccaaagcaggtcgtgtgataaggaaagatcagatcttttgggtctttacactattgcgcaacggacaaaaattgtggttttgtttgcattctgggattaactataagacagtcattagggcaaggtgaaatcccggtacatccttgcgacagagcatggtgtgaaacccaggcccacaatcacttaaggattctgaacagtcagcacaatcgcacttatcagatgatgaccagcaacagtaattataccaacagaactattggattttttacacaaacctacagtaactagtggaaaataaccataccattcacataactttggaagtgaataatttggaagcagattccccggtgtctccctatgtagcgatatctgtcacgtccttgtatgtatgaaacaaaaggctgacattcctcctgaaccattgttttggaactcctaaactgacaaacctgcttccagaacaccaacagaatgttattttaatcagcaagttccgcagagcaagcaccagaagcacattggtggcaaagtcacatctacaatcctggcaacaaactaagtattgtcaggtcagtttaatacaagaatctaagcctcagtggaagtc
gi|3 : ttcttgttgcaccagaaattactcctaaataaatgtattcccattactaatttgtatgtcgtttccgacttctcgtaacg-CCAGCAACA-GT--------------------A---------------------A---TTA----------------------TAC----------CA------A-CA--------------G--A-ACT-A--TTGGA------TTTTTT-------ACACAAACCTACAGTAA-CTAGTGGAAAATAACCATACCATTCAC--A----TAAC-TTTGGAAGT---G---AATAATTTGGAAGCAGATTCCCCGGTGTCTCCCTATGTAGCG-ATATC-TGTC-AC--GTCCTT-GTATGT-ATGAAACA--AAAG-GCTGACA--TTCCT-CCTGAACCATTGTTTTGGAA-CTCCTAAACT------------GACAAACCTGCTTCCAGAA--------CACCAACAGA--ATG-TTATTTTAATCAGCAAGTTCCGCAGAGCAA-GCACC------AGA--AGCACATTGGTGG-----CAAAG--TCA---CATCT--------------------ACAATC-------------------CTGGCAACAAACTAAGTA-TTGTC-AGGTCAGTTTAATAC-AAGAATCTAAGCCTCAGTGGAAGaggattctgaacagtcagcacaatcgcacttatcagatgatgaccagcaacagtaattataccaacagaactattggattttttacacaaacctacagtaactagtggaaaataaccataccattcacataactttggaagtgaataatttggaagcagattccccggtgtctccctatgtagcgatatctgtcacgtccttgtatgtatgaaacaaaaggctgacattcctcctgaaccattgttttggaactcctaaactgacaaacctgcttccagaacaccaacagaatgttattttaatcagcaagttccgcagagcaagcaccagaagcacattggtggcaaagtcacatctacaatcctggcaacaaactaagtattgtcaggtcagtttaatacaagaatctaagcctcagtggaagtc
gi|4 : ttcttgttgcaccagaaattactcctaaataaatgtattcccattactaatttgtatgtcgtttccgacttctcgtaacgcggtttcgtagctctgagctgctgatacaacacattttgttgtatttataagctaaggtccagatcaagaattgagaggttgaaaccgatttggaataaagattcttcaaatcgcagcttaagtccaaagcaggtcgtgtgataaggaaagatcagatcttttgggtctttacactattgcgcaacggacaaaaattgtggttttgtttgcattctgggattaactataagacagtcattagggcaaggtgaaatcccggtacatccttgcgacagagcatggtgtgaaacccaggcccacaatcacttaaggattctgaacagtcagcacaatcgcacttatcagatgatga-AAAGGTAT-CCCA-TTACTAAATTTTGTA-GTCAT---TGAGTTCTCGCTTT-GATTATTGTAGTCTTTGGATGAAAATCGCTGTAAACGGACT----------AAGCTGCTG-ATAGCAAC-CATTATGTTTAGTTCATAAGCTAA--TCCAGATTG-GAATGAAG----TGCAAGGA-A---ATCTGGGTGGTAAAAAT-C--CAAATAGGCAGCTTTGAGTCCAGA-TAGATCGTG-TAATA-GGGAGCATACACATAT--TTTT--GGTC-------------TTATCAT---AC---TATT----GTAA-AG-ACAAAA-TC-GATGGTTTTGTTTACATGCTGGA--TGGCCATAA--CAGTCAACAGG-CTACGTTATATCCCGGTACA-TTCC-ATTGCGACAGAT-CATGGTGTGAA-CC-CCAGCAGCACATCC------------------A---------------------C---T------------------------TAC----------CAGGATATGACA--------------GC-ACATTTG--ACA---------------------ACA-AAACCTGTAGTAA-CATGTGGGGAATGA-CAT-TCATTCTCCAA----TGACATTTGG-GGTTTCG---AATAACGTGGAAGAAGATGTCC---------CCTACATA-TG-ATCTCAATTC-ACA-GTCCTCAGCTTGT-ATG-AAAA-GAAAGGGAGGACATTATCCTCCCTGGACCA--GTTTTGGTATATCCTAAATTTGACA----ACTGACAAACCCGCTT-CACAACATTTTGTAACCAAT---AGCTG-T--TTTCAATCAGCATG-TCTTTAGAGCAAGGTACCAGATCTAGACCAGCGT-CTGGTAG-----CAAAG--TAA---CATC---------------------GCCAGTATGAACTTAGGTGATCTTGTTGGCAAAGAAT--GGTA--TGTC-AGATCAGTTAATTACAAAGAATC-AATCTCCAGTtc
gi|5 : TTGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCTA-TTACTAAATCTTGTA-GTCGT---CGACTTCTCGTTAG-GATTGTTGTATTCTT-GGATGCAAACCACAGATCACGGGTTCGTATCTCTGATGCTGCTG-ATATCAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-GAATTGAG----TG----GA-A---ATTTGGGTAATTAAAATTC--CAAATTCGCAGCTTTGAGTCCAAA-CTGGTCGTG-TAGTA-AGCGACATACACAT----TTTT--GGTC-------------TT---GT---AC---TATTGC-GGTAA-GG-ACAAAA-TT-GCTGGTTTTGTTTACATTCTGTA--TAACTATAA--CAGTCATTAGG-CAAGGTTGCATCCCGGTACA-TTTC-ATTGCGACAGAG-CATGGTGTGAA-TC-CCAGCAGCGCAT--------------------A---------------------T---TTA----------------------TGC----------CA------AACA--------------GG-A-ACT---------------TTTCTC-------ATACAAACCTAGAGTAA-CAAGTGGGAAATGA-CAT-CCATTCACTAA----TAGCATTTGT-AGT---G---AATAATGTGGAGGCAGATACCCCGGTATAT-CCAATGGA-CG-ATCCCATGTC-ACA-GTCCTCAGCTTGT-ATG-AACA-GAAAGCGCTGACAATTTCCTCCCTGAACCA--GTTTTGGAATTTCCTAACCTTGACA----ACAGACAAACCTGCTT-CACAA--------AACTAAC---ATATG-T--TTTCAATCAGCATG-TCCTCAGAGCAAGGTATC------AGACTAACAT-CTGGTGG-----CAAAG--TCA---CGTC---------------------AC-AGC-------------------CTGGCAACAAAT--AGTATTTGTC-AGGTCAGTTTAATACAAAGATTC-AAACTCCAGTGGAAG
gi|6 : ATACACAT----TTGT--GGTG-------------TT---ATCATAC---TATTGC-GGCAA-GG-ACAAAA-TC-GCCGGCTTTGTTTACATTCTGGA--TAGCCATAA--CAGTCATCTGG-GAACGTTACATCCCGTTACA-TTCC-ATTGCTACAGAG-CATGGTGTGAA-CCTCCAGCAGCACACCCCTTACCAGACGTGACAGCA---------------------CAGTTTA----------------------TAC----------CA------AACA--------------GG-A-ACTTG--TT-----------TTTT-------GCACAAACCTGGA-TAATCATGTGGGAAATGA-CAC-CCATTCACTAA----TAACATTTGG-GGT---GCAGAATAATGTGGAAACAGATACCCCGGTCTCT-CCTATGTA-CG-ATCTCATGTC-ACA-GTCCTCAGTTTGC-ATG-AACA-GAAAACGCTGACAATTTCCTTCCTGAATCA--GTCTTGGAATCTCCTGACCTTGATA----ACAGACAAACCTGCTT-CACAA--------AACCAACAGAAGATA-T--TTTCAACCAGAATG-TCACCAGAACAAGGCACC------AGACCAGTAT-ATGGTAG-----C-TAG--TCA---CATC---------------------ACAAGC-------------------CTGGCAACAAAT--GGTATTTGTC-AGGTCAGTTTAACACAAAGACTC-ACGTTCCAGTGG
gi|7 : gtGTTG-ACCAGAATT-A-TCC---AA-AAAGGTAT-CCCA-TTACTAAATGT---A-GTTGT---AGAGTTCTCGATAG-GATTATTGTATTCTT-GGATGCAAACCACA--AAACGGGCTCGTAGCTCTGATGTTGCTG-ATAGCAAC-CATTTTGTTTAATTTATAAGGTAA--CCCAGATCG-AAATTAAG----TG----GA-G---ATTTGGGTAATAAAAAATC--GAAATCC-CAGATTTGAGTCCAAA-CAGGTCGTG-TAATA-GGCAACATACACAT----TTTT--GGTG-------------TT---TT---AC---CATTGC-GGCAA-GG-ACAAAA-TC-GTT-GTTTTGTTTACATTCTGGA-----------------CATTAGG-CAAGGTTG-ATCCCGGT-CA-TT-C-ATTGCAACAGAATCATGGTGTGAA--C-CCAGCAGCACACCC------------------ATTATCAGATGTGACAGCACATT---TTA----------------------TACG---------CA------TACA--------------GGAA-ACTTG--TTGGTTT----TTTTTT-------ACACAAACCTGGAGTAA-------------------------CACTGA----TAACATTTGG-AGT---G---AATAATGTGGAAGCAG
gi|8 : TGTTG-ACCAGAAAT-A-TCC---AA-AAAGGTAT-CCCA-TTGCTAAATGTTGTA-GTCGT---CTATTTCTCGTTAG-GAATATTGTATTCTT-GGATGCAAACCACAGAAAACGGGCTCGTAGCTCTGATGCTGC----TAACAAC-CATTTGGTTTCATTT
gi|8 : AATTAAG----TG----GA-A---ATTTGAGTATTAAA--TTA--CAAATCCCCAGCTCTGAGTCCAAA-CAGGTCGTG-TAATA-GGCAACATTCACAT----TTTT--GGTC-------------TT---AT---AC---TATTGC-GGCAA-GG-ACAAAA-TC-GTTGGTTTTGTTTACATTCTGGA--CAACTATAA--CAGTCATTAGG-CAAGGTTGCATCCCAGTACA-TTCC-ATTGCGACAGAG-CATGGTGTTAA-CC-CCAGCAGCACATCC------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattaagtggaaatttgagtattaaattacaaatccccagctctgagtccaaacaggtcgtgtaataggcaacattcacatttttggtcttatactattgcggcaaggacaaaatcgttggttttgtttacattctggacaactataacagtcattaggcaaggttgcatcccagtacattccattgcgacagagcatggtgttaaccccagcagcacatcc
gi|9 : tgttgaccagaaatatccaaaaaggtatcccattgctaaatgttgtagtcgtctatttctcgttaggaatattgtattcttggatgcaaaccacagaaaacgggctcgtagctctgatgctgctaacaaccatttggtttcatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn---TTA----------------------TAC----------CA------AACA--------------GG-A-ACTTG--TTGG-------TTTTTTTTTTTTTACACAAACCTAGAGTAA-CAAGTGGGAAATGA-CAT-CCATTCACTAA----TAACATTTGG-AGT---G---AATAATATGGAAGTAGATACCCCGGTATCT-CCAATGTA-CG-ATCTCATGTC-ACA-GTCCTCAGCTTGT-ATG-AACA-AAAAGCGCTGACAATT-CCTCCCTGGACCA--GTTTTGGAATCTCCTAAC-TTGATA----ACAAA-AAACCTGCTT-CACAA--------AAC---------AT------TTCAATTAGCATG-TCCTCAGAGCAAGGTACC------AGACTAACAT-CTGGTAG-----CAAAG--TCA---CGTC---------------------ACAAGC-------------------CTGGCAACAAAT--AGTATTTGTC-AGGTTAGTTTGATACAAAGAATC-AAGCGCCAGTGGAAG