lowQualScore : 11111111111111111111111111111111111111 111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 6666 11 22222222222222222222222222222222222222 22 2222 000000000000000000000000000000000 22 4 2 11 88888888888888888888888 3333333333333333 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 22 5 6 1111 6 6 22 22222222222222222222222222222222222222 11 6666 2 6 222222222222222222222222222222222 6 11 0 6 55 3 3 77777777777777777777777 11 6 2 9999999999999999 4 4 777 4 5 4 8 0 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888
lowQualScore : .. . . .... . . .. ...................................... .. .... . . ................................. . .. . . .. . . ....................... .. . . ................ . . ... . . . . . ................................................................................................................................................................
lowQualScore : 00 0 0 0000 0 0 00 00000000000000000000000000000000000000 00 5555 0 7 222222222222222222222222222222222 0 00 0 7 88 2 2 88888888888888888888888 66 7 1 8888888888888888 4 4 888 4 7 2 2 7 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444
consensus : AGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGTC---CA-AACGAACGGATAGATGGATGAAAAGA---CAGATAGACAT-------ATGCTGGCGGAACCAGNANAAAATTATCCCCAAAAGTTGTTT-GTCCGGTGAGGATACTGGCAGAATGTACAGAAATA--CAA-----TGAA-A-AAATA-TCCNCAAA-TGGCCACAA-C--NTT-CTCAA-AATTGAA---CGAA-TCAATCTGAAAATATCAGGTGCAC-------AGGT---TT-AC---ATA---GTA-T-A-CAACATT-TCC-CAAA-ATTTGG-T--AAAA-AGTGAGCGAACAG--TCNNN---GAAA--ATCTTC-GGACAA-AATG----TGT-----G-A-------N----GG--ATGGACTG------AAGTGAAAGCAAT
Reference ( gi|1 ) : AGCCCTTTGTTTACCAAAT-AGCATTTAAAGTTTTTAGGTGAAAGCAA-CTACTTGTC---CATAACA----GATGTATGGATGAAAAGA---AAGACAGACAT-------ATA---GCAAAACCAGTAC------ATTCCCAAAATCTGTTTTGTGTGG-GAGGATATTGGCAAAATGTACAGAAATA--TAA-----TGAA-A-AAATA-TCTACAAC-TGGACATGA-C--ATT-CTCAA-AATTGAA---CAAA-TCAATCTGAAAACACCAGGTGCAC-------TGGT---TA-AC---ATA---GCA-T-A-CAAGATT-TCTACAAA-ATCTGG-T--AAAA-AGTGGATGAACAGGTTCTTT---GAAA--ATCTTT-AGACAA-AATG----TGT-----G-A-------A----GG--ATGGACTG------AAGTGAAAGCAAT
gi|6 : AGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGTC---CA-AACAAACGGATAGATGGATGAAAAGA---CAGATAGACATGGTGAGGATACTGGCAGAAT--GTACAAAATTATCCCCAAAA
gi|5 : aaAGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGTCAAACA-AACG----GATAGATGGATGAAAAGA---CAGATAGACAT-------cttaactactttcaaaattgaatgaatcaataagaaaataacaggagcacagctttatcgtgtgtacatatagtatacaacatttcaaacattaagtgtgcgagaaaatctttggacaaaat
gi|3 : AGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGTC---CA-AACAAACGGATAGATGGATGAAAAGA---CAGATAGAggtgaggatactggcagaatgtcaaaaaattatccccaaaacttaacctactttcaaaattgaatgaatcaataagaaaatacaggagcacagctttatcgtgtgtaacatataggtatacaacatttcaaacattaagtgtgcgagaaaatctttgggacaaaat
gi|17 : tgaatgccctcactggcctcatccacattgatgcacaattgtatagctaaacgccaggaagacgtgtttcgacattattcgtgtttcacatcatgatcaatacaatttacaggttaaactaaatcccttaaacccaaataaatatatggaggaaataaaaatcagggcaacaaaatcactccatctaaTAGGTGAAATGACCAAACACAGA-A--------ATG---GTGAAACCAAAAA------ATCTCCAAAAGTTGTTT-GTGGGG-AAGAATACAGGCAAAATGTACAGAAACA--CAA-----TGAA-A-ACATT-ACTGCAA
gi|6 : TGGTGAGGATACTGGCAGAATGTACA-AAAT---------------------TA-TCCCCAA----AACTTAA-CT-ACT-TTCAA-AATTGAA---TGAA-TCAATAAGAAAATAACAGGAGCACAGCTTTATCGTGTGTACAT---ATA---GTA-T-A-CAACATT-T---CAAACATT----------A-AGTGTGCGA--------------GAAA--ATCTTT-GGACAA-AATat
gi|5 : aaagctttttggtcaccaccttaacatctaaaacttaatttaaaccaatccattgtccaaacaaacggatagatggatgaaaagacagatagacaTGGTGAGGATACTGGCAGAATGT-CA------------------AA-A-AATTA-TCCCCAA----AACTTAA-CCTACT-TTCAA-AATTGAA---TGAA-TCAATAAGAAAATA-CAGGAGCACAGCTTTATCGTGTGTA-AC---ATATAGGTA-T-A-CAACATT-T---CAAACATT----------A-AGTGTGCGA--------------GAAA--ATCTTTGGGACAA-AAT
gi|14 : agctttttggtcaccaccttaacatctaaaacttaatttaaaccaatccattgtcaaacaaacggatagatggatgaaaagacagatagacaGATAC-GGCAAT-TGTAAAGAAATAATTAAAGTTTTGGATATAAATA-ACTACAAAATGGCCACAAAC--TTT-CTTAA-AATTGAA---CAAA-TCAAT-TGAGAATATCAGGTTC-C-------AGGTC--TT-ACA--ATA---ATA-T-ACCAATATT-TTCTCAAA-ATTTGG-T--AAAA-A
gi|8 : AATAGTCCAGAAA-AGGCCAT-A-C--ATTTCTCTA-AATTGAATAACAAA-CTAGCCTGAAAATACCTCACGCTC-------AGGT---TT-AC---AAA---GTAAT-G-CAACATT-TGCACAAA-ATTTTG-T--AAAAGACCAAACGAACAGTGTATCA---GAAA--ATCTTC-AGAT-A-AATG----AGT-----GTA-------T----GG--ACGCACAGGCAAAAGAGTGAAAGCAt
gi|9 : A-TCTTAAAA-TAAACACAA-C---TT-ATCAA-AATTCAA---TAAA-TCAGTGTAAAAATAAAAAGTGCAT---------GT---TG-AC---ATG---GTA-T-G-TAAAATT-TCC---AA-ATCTGGATGAAAAA-AATCAATAATTAGTATCAGT---G-CA--ATCTCT-AGAAAA-AAT
gi|11 : CTACAAA-TGGCCACAAAC--TTT-CTTAA-AATTGAA---CAAA-TCAATTTGAGAATATCAGGTACAC-------AGGT---TT-ACA--ATA---ATA-T-A-CAATATT-TTCTCAAA-ATTTGG-T--AAAA------GTTAATAGCCTCCTT---AAAA--AAATTCAAGACAA-ACTGCACCTAT--------------------GG--ATGGA-TA------AAGTGAAAGaaaagcctacagatggctggacagactgacagggtgaaactgata
gi|21 : aACAAA-TGACCACAA-C--TTT-CTCAA-AATTGAA---CGAA-TCAACCTGTAACCATCAGGTGCAaa
gi|12 : CATAA-C--TTT-CTAAA-AATTGAA---CAAG-TCAGTCTGATGATATCAGGTACAC-------AAGT---TT-AC---ATA----TA-A-A-CAACACT-TC-----------GT-T--AAAA-GGTAAATAAACAG---CCAA---GAAA--ATCTCG-CGACAA----G----TTT-----A-A-------GATTTGGCTATGGAC-A------AAGTGAAtatataggtacatgtac
gi|13 : aatgacTGA-C---TT-TTCAACGACCGAA---CGAAGTCAATCTTAAAATACCAGGTGCA--------TGGT---TT-ACATGATA---G-A-TCA-CAATAGTATCTATAAA-AT-TGG-T--AGAA-AGTAATTCAACA---TCTTCCGAGAGA--ATGTTC-AGAAAACAATA----CGT-----tctaatatacccc
gi|15 : CAGAT-CAT-------AGGT---TT-AC---ACA---ATG-T-A-CAG---T-TCCACAAA-ATTTGG-T--ACAA-AGTGAATAACTAG--CCAAT---GAAAGAATCTCT-GCACAA-AATG----TGTCTACAG-ATGCACACA----AA--ATAGA-TG------AATTGAAACCAATctacggacagacagttg
11 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): ATGAATGATACCCCCACGAGGCTCATCTATATTGGGGAATATTCAAACTTCTGCATAGCTGACGACCAGAAAGACACGAGTTTCATTCATGTTTCACCTGAGTACAAGTTACACTACATTCCTATGACCTCGACTTTTATCAGTATTCATGGTGTAAGAACGATGAATAACAAAGCATTACACTTTGGTCATCAACTGGAATCTATACGCTTAACAGCGTGAAACTTTTTAATTATCCCAATAAAAGACAGACAGACTTAATACACTTCCAAAAGTTGTGTTTGTGGAGGAGGGCATTAGCAGAAGGCAAAGCAATAT
Unaligned ( gi|4 ): AACACCCGCAGGTTTCATCCATGTTGGGGAATGTTTGAAATCTAAAGGTAAAGACCAAAAAGATATGAGTTTCAACATTGCTCATTATTTACCTGAATACATGTTACAGGCTATACTAAATCCCTTTAACCTCGATGTTTATCAATATTCGAGAAAGGAGAAATGTAAATAATAGTGAAGTGTTTGGTCAATAACTTGAATCTACAATCAACAACATGTATATGTAAAGTCAAGTGATTGTCTCGATAACAAATGGAGGCATGGTAAAA
Unaligned ( gi|7 ): ACAAGGGTGTTACTCCTACGAGGATCAGATCACCCATAAATAGGGACATATTTGAAATATTGCATCGATGAAGACCAAACTTAGGGCATGAGTTTCAACATTATTCAGATTTTATCTTACCGGGTAATACAAGTTACAGGATATATACACATTCCCCTGACCTTTAAATTTATCAATAATCATTAGTGTAGTAAAGAGTGTATGTACAATAAATTATCATCCACT
Unaligned ( gi|10 ): GGACTTACTTGAAATAAATGTATTAAAAAAAAAAAAATTCAGAGCTCGACGAGTTTCAAAATAATCCATATTCTACCAACATGTATATATACAAGTAGCAGTCTACAAAAAAATTCTCTGACATTTTTTATCAATATATCAACAGTCATGGTACATGTATATAAAAGAA
Unaligned ( gi|16 ): AAATTATAAATTGATAACTAGACTCATTCTAACAGGAAATGTCCGTTGAAATGCTGCATAACTGAAGACAAAGACACAAGTTTTAATATCATTCATGTCTCATCTGAATAAAATTTACAGGACAT
Unaligned ( gi|18 ): GATATCCCCGATGAGTCATCTATATTGAGGCATATTTGAAAAATTGCAAAACCGAAGACCACAACGACATCATATGTTCAAGTTTCTGTTGAATACAAACTACAAGACA
Unaligned ( gi|19 ): TTAATACAAGTTACAGACTATACTATGTTTGTTTCATCTTGATTTTTACCAAATACTCATCAAGCATGAAAAAGAGAAAATGCAAATTCTAATATCAAAATATTT
Unaligned ( gi|20 ): AATAGAACTAATACCCCATACAGAGCTCATTCATATTGGAGAATATCTGAAGATCAGAAAAACAGGAATTTATGTTTTACCAGTATGAATACAAGTTACA
Unaligned ( gi|22 ): TATTCATGTTTCACCTGCACACAAGTTATACAATACACTACATTCCTTTGACCTTGATATTT
Unaligned ( gi|23 ): TCACTTTGATTTTCAACAACAATCCTGGTGTAAAAATATAGTA
Unaligned ( gi|24 ): ATACGGCAATTGTAAAGAAATAATAAAGTTTGGATGTAAA
Alignments
lowQualScore : 11 1 111 888888888888 3333333333333 33333 55555555555555555555 111 1111111 33333333333 2222 4444444444444 111 33333333333 555555555555555555
lowQualScore : 3 33 3 0 2 3 8 444 555555555555 2 7777777777777 8 99999 9 8 6 6 0 5 11111111111111111111 5 1 111 1111111 55 4 777 4 4 999 4 3 33333333333 7 7777777777 3 4 8 0000 4 8 3 4 55 4 0 333 7777777777777 66 222 4 0 11111111111 99 444444444444444444
lowQualScore : . .. . . . . . ... ............ . ............. . ..... . . . . . . .................... . . ... ....... .. . ... . . ... . . ........... . .......... . . . .... . . . . .. . . ... ............. .. ... . . ........... .. ..................
lowQualScore : 2 88 2 0 5 2 2 000 222222222222 0 0000000000000 8 00000 2 0 0 4 8 0 00000000000000000000 7 0 000 9999999 55 0 000 0 1 666 5 6 22222222222 3 3333333333 6 8 0 9999 0 0 2 0 55 0 9 222 7777777777777 11 222 4 3 55555555555 22 666666666666666666
consensus : AGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGTCCAAACAAACGGATAGATGGATGAAAAGAC---AGATAGACATGGTGAGGATACTGGCGGAACCAG-TACAAAATTATCCCCAAAACTTGTTTTGTGTGGTGAGGA-TACTGGCAGAATGTACAGAAATACAATGAAA-----------AAATA-TCTNCAAA---TGGCCAC--AA-CTT--TCTCAA-AATTGAA---CGAA-TCAATCTGAAAATA--TCAGGTGCACAGGT-TT-----------AC-ATA---GT-A---TA-CAACA-TTT-CC-CA-AA-ATTTGG-T--AAAA-AGTGAACGAACA--G--TCCGNGAA--AATCTTC-G-GACAA-AATGCG-T-N-A----CGG--ACGGAC----------TG------AAGTGAAAGCAAT
Reference ( family-846 ) : AGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGTCCAAACGAACGGATAGATGGATGAAAAGAC---AGATAGACAT-------ATGCTGGCGGAACCAG-NANAAAATTATCCCCAAAAGTTGTTT-GTCCGGTGAGGA-TACTGGCAGAATGTACAGAAATACAATGAAA-----------AAATA-TCCNCAAA---TGGCCAC--AA-CNT--TCTCAA-AATTGAA---CGAA-TCAATCTGAAAATA--TCAGGTGCACAGGT-TT-----------AC-ATA---GT-A---TA-CAACA-TTT-CC-CA-AA-ATTTGG-T--AAAA-AGTGAGCGAACA--G--TCNNNGAA--AATCTTC-G-GACAA-AATGTG-T-G-A----NGG--ATGGAC----------TG------AAGTGAAAGCAAT
gi|1 : AGCCCTTTGTTTACCAAAT-AGCATTTAAAGTTTTTAGGTGAAAGCAA-CTACTTGTCCA---TAACAGATGTATGGATGAAAAGAA---AGACAGACAT-------ATA---GCAAAACCAG-TACA------TTCCCAAAATCTGTTTTGTGTGG-GAGGA-TATTGGCAAAATGTACAGAAATATAATGAAA-----------AAATA-TCTACAAC---TGGACAT--GA-CAT--TCTCAA-AATTGAA---CAAA-TCAATCTGAAAACA--CCAGGTGCACTGGT-TA-----------AC-ATA---GC-A---TA-CAAGA-TTT-CTACA-AA-ATCTGG-T--AAAA-AGTGGATGAACA--GGTTCTTTGAA--AATCTTT-A-GACAA-AATGTG-T-G-A----AGG--ATGGAC----------TG------AAGTGAAAGCAAT
gi|11 : CTACAAA---TGGCCAC--AAACTT--TCTTAA-AATTGAA---CAAA-TCAATTTGAGAATA--TCAGGTACACAGGT-TT-----------ACAATA---AT-A---TA-CAATATTTT-CT-CA-AA-ATTTGG-T--AAA------AGTTAATA--GCCTCCTTAAA--AAAATTCAA-GACAA-ACTGCACC-T-A----TGG--ATGGA-----------TA------AAGTGAAAG
gi|12 : aAA---TGACCAT--AA-CTT--TCTAAA-AATTGAA---CAAG-TCAGTCTGATGATA--TCAGGTACACAAGT-TT-----------AC-ATA----T-A---AA-CAACA-CTT-C------------GT-T--AAAA-GGTAAATAAACA--G---CCAAGAA--AATC-TC-GCGACAA----GTT-T-A-AGATTTGGCTATGGAC-----------A------AAGTGAAaa
gi|13 : T--TTTCAACGACCGAA---CGAAGTCAATCTTAAAATA--CCAGGTGCAT-GGT-TT-----------AC-ATG---AT-AGATCA-CAATA-GTA-TC-TATAA-AATTGG-T--AGAA-AGTAATTCAACATCT--TCCGAGAG--AATGTTC-A-GAAAACAATACG-TCT-A----CGG--ACAGAC----------tctaatatacccc
gi|14 : tgacGA-TAC-GGCA-ATTGTAAAGAAATA--ATTAAAGTTTTGGATATAAATA-ACTACAAAA--TGGCCAC--AAACTT--TCTTAA-AATTGAA---CAAA-TCAAT-TGAGAATA--TCAGGTTC-CAGGTCTT-----------ACAATA---AT-A---TACCAATATTTT-CT-CA-AA-ATTTGG-T--AAAA-Aagttg
gi|15 : CAGAT-CATAGGT-TT-----------AC-ACA---AT-G---TA-CAG----TT-CCACA-AA-ATTTGG-T--ACAA-AGTGAATAACTA--G--CCAATGAAAGAATCTCT-G-CACAA-AATGTG-TCT-A----CAG--ATGCACACAAAATAGATG------AATTGAAACCAATt
gi|17 : TAGGTGAAATGACCAAACACAGAAAT------------GGTGAAACCA-----AAAA--ATCTCCAAAAGTTGTTT-GT--GGGGAAGAATACAGGCAAAATGTACAGAAACACAATGAAA-----------ACATT-ACTGCAAA---Ta
gi|21 : CAAA---TGACCAC--AA-CTT--TCTCAA-AATTGAA---CGAA-TCAACCTGTAACCA--TCAGGTGCA-------T-----------AT-ATA---G--G---TA-CA
gi|3 : aAGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGTCCAAACAAACGGATAGATGGATGAAAAGAC---AGATAGAtgtac
gi|5 : tgaatgccctcactggcctcatccacattgatgcacaattgtatagctaaacgccaggaagacgtgtttcgacattattcgtgtttcacatcatgatcaatacaatttacaggttaaactaaatcccttaaacccaaataaatatatggaggaaataaaaatcagggcaacaaaatcactccatctaaAGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGT-CAAACAAACGGATAGATGGATGAAAAGAC---AGATAGACATGGTGAGGATACTGGCAGAAT--GTCAAAAAATTATCCCCAAAACTT
gi|5 : GGTGAGGA-TACTGGCAGAATGT---------CAA---AA-----------AATTA-TCCCCAAA--------ACTTAA-CCTACTTTCAA-AATTGAA---TGAA-TCAATAAGAAAATA---CAGGAGCACAGCT-TTATCGTGTGTA-AC-ATATAGGT-A---TA-CAACA-TTT----CA-AACATT----------A-AGTGTGCGA-------------GAA--AATCTTTGG-GACAA-AATaacctactttcaaaattgaatgaatcaataagaaaatacaggagcacagctttatcgtgtgtaacatataggtatacaacatttcaaacattaagtgtgcgagaaaatctttgggacaaaat
gi|6 : agctttttggtcaccaccttaacatctaaaacttaatttaaaccaatccattgtcaaacaaacggatagatggatgaaaagacagatagacatAGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGTCCAAACAAACGGATAGATGGATGAAAAGAC---AGATAGACATGGTGAGGATACTGGCAGAAT--G-TACAAAATTATCCCCAAAACTT
gi|6 : aaGGTGAGGA-TACTGGCAGAATGTACA-AAAT-----------------------TA-TCCCCAAAACTTAACTAC----------TTTCAA-AATTGAA---TGAA-TCAATAAGAAAATA--ACAGGAGCACAGCT-TTATCGTGTGTACAT-ATA---GT-A---TA-CAACA-TTT----CA-AACATT----------A-AGTGTGCGA-------------GAA--AATCTTT-G-GACAA-AATaactactttcaaaattgaatgaatcaataagaaaataacaggagcacagctttatcgtgtgtacatatagtatacaacatttcaaacattaagtgtgcgagaaaatctttggacaaaat
gi|8 : aaagctttttggtcaccaccttaacatctaaaacttaatttaaaccaatccattgtccaaacaaacggatagatggatgaaaagacagatagacatAATAGTCCAGAAA---AGGCCAT--AC-ATT--TCTCTA-AATTGAATAACAAA-CTAGCCTGAAAATACCTCA--CGCTCAGGT-TT-----------AC-AAA---GTAA---TG-CAACA-TTTGCA-CA-AA-ATTTTG-T--AAAAGACCAAACGAACAGTG--TATCAGAA--AATCTTC-A-GAT-A-AATGAG-T-GTA----TGG--ACGCAC----------AGGCAAAAGAGTGAAAGCA
gi|9 : A-TCTTAAAA---TAAACAC--AA-C-T--TATCAA-AATTCAA---TAAA-TCAGTGTAAAAATA--AAAAGTGCAT--GT-TG-----------AC-ATG---GT-A---TG-TAAAA-TTT-CC----AA-ATCTGGATGAAAAA-AATCAATAATTA--GTATCAGTG-C--AATCTCT-A-GAAAA-AAT
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): ATGAATGATACCCCCACGAGGCTCATCTATATTGGGGAATATTCAAACTTCTGCATAGCTGACGACCAGAAAGACACGAGTTTCATTCATGTTTCACCTGAGTACAAGTTACACTACATTCCTATGACCTCGACTTTTATCAGTATTCATGGTGTAAGAACGATGAATAACAAAGCATTACACTTTGGTCATCAACTGGAATCTATACGCTTAACAGCGTGAAACTTTTTAATTATCCCAATAAAAGACAGACAGACTTAATACACTTCCAAAAGTTGTGTTTGTGGAGGAGGGCATTAGCAGAAGGCAAAGCAATAT
Unaligned ( gi|4 ): AACACCCGCAGGTTTCATCCATGTTGGGGAATGTTTGAAATCTAAAGGTAAAGACCAAAAAGATATGAGTTTCAACATTGCTCATTATTTACCTGAATACATGTTACAGGCTATACTAAATCCCTTTAACCTCGATGTTTATCAATATTCGAGAAAGGAGAAATGTAAATAATAGTGAAGTGTTTGGTCAATAACTTGAATCTACAATCAACAACATGTATATGTAAAGTCAAGTGATTGTCTCGATAACAAATGGAGGCATGGTAAAA
Unaligned ( gi|7 ): ACAAGGGTGTTACTCCTACGAGGATCAGATCACCCATAAATAGGGACATATTTGAAATATTGCATCGATGAAGACCAAACTTAGGGCATGAGTTTCAACATTATTCAGATTTTATCTTACCGGGTAATACAAGTTACAGGATATATACACATTCCCCTGACCTTTAAATTTATCAATAATCATTAGTGTAGTAAAGAGTGTATGTACAATAAATTATCATCCACT
Unaligned ( gi|10 ): GGACTTACTTGAAATAAATGTATTAAAAAAAAAAAAATTCAGAGCTCGACGAGTTTCAAAATAATCCATATTCTACCAACATGTATATATACAAGTAGCAGTCTACAAAAAAATTCTCTGACATTTTTTATCAATATATCAACAGTCATGGTACATGTATATAAAAGAA
Unaligned ( gi|16 ): AAATTATAAATTGATAACTAGACTCATTCTAACAGGAAATGTCCGTTGAAATGCTGCATAACTGAAGACAAAGACACAAGTTTTAATATCATTCATGTCTCATCTGAATAAAATTTACAGGACAT
Unaligned ( gi|18 ): GATATCCCCGATGAGTCATCTATATTGAGGCATATTTGAAAAATTGCAAAACCGAAGACCACAACGACATCATATGTTCAAGTTTCTGTTGAATACAAACTACAAGACA
Unaligned ( gi|19 ): TTAATACAAGTTACAGACTATACTATGTTTGTTTCATCTTGATTTTTACCAAATACTCATCAAGCATGAAAAAGAGAAAATGCAAATTCTAATATCAAAATATTT
Unaligned ( gi|20 ): AATAGAACTAATACCCCATACAGAGCTCATTCATATTGGAGAATATCTGAAGATCAGAAAAACAGGAATTTATGTTTTACCAGTATGAATACAAGTTACA
Unaligned ( gi|22 ): TATTCATGTTTCACCTGCACACAAGTTATACAATACACTACATTCCTTTGACCTTGATATTT
Unaligned ( gi|23 ): TCACTTTGATTTTCAACAACAATCCTGGTGTAAAAATATAGTA
Unaligned ( gi|24 ): ATACGGCAATTGTAAAGAAATAATAAAGTTTGGATGTAAA
Alignments
lowQualScore : 11 1 1 22222 11 1 1 55555555555555555555 11 222222222222222222222222 2222 4444444444444444444444 111 33333333333333333 4444444444444444444444
lowQualScore : 3 33 3 0 2 0 3 6 6 2 77777 2 3 22 0 5 5 6 6 0 5 11111111111111111111 5 1 77 22 22 8 4 55 0 4 777 4 4 999 4 3 444444444444444444444444 7777777777 3 4 8 0000 4 8 3 4 55 4 9999999999999999999999 66 222 4 88888888888888888 6 9999999999999999999999
lowQualScore : . .. . . . . . . . . ..... . . .. . . . . . . . .................... . . .. .. .. . . .. . . ... . . ... . . ........................ .......... . . . .... . . . . .. . ...................... .. ... . ................. . ......................
lowQualScore : 2 88 2 0 5 0 2 7 7 0 55555 5 2 22 2 5 5 0 4 8 0 00000000000000000000 7 0 44 00 22 0 0 55 7 0 000 0 1 666 5 6 444444444444444444444444 3333333333 6 8 0 9999 0 0 2 0 55 0 9999999999999999999999 11 222 4 55555555555555555 7 6666666666666666666666
consensus : AGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGTCCA-AACAAACGGATAGATGGATGAAAAGACAGATAGACATGGTGAGGATACTGGCGGAACCAGT-ACAAAATTATCCCCAAAACTTGTTTTGTGTGGTGAGGATACTGGCAGAATGTACAGAAATACAATGAAA-----------AAATA-TCTNCAAA-TGGCCAC--AA-CT-T--TCTCAA-AATTGAA---CGAA-TCAATCTGAAAATA--TCAGGTGCACAGGT-TT-----------A----------C-ATA---GT-A---TA-CAACA-TTT-CC-CA-AA-ATTTGG-T--AAAA-AGTAAATAAACA--G--T---CCGNGAA--AATCTTC-G-GACAA-AAT----GC------G-T-TAC-GGACGGAC----------TG------A---AGTGAAAGCAAT
Reference ( family-846 ) : AGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGTCCA-AACAAACGGATAGATGGATGAAAAGACAGATAGACATGGTGAGGATACTGGCGGAACCAGT-ACAAAATTATCCCCAAAACTTGTTTTGTGTGGTGAGGATACTGGCAGAATGTACAGAAATACAATGAAA-----------AAATA-TCTNCAAA-TGGCCAC--AA-CT-T--TCTCAA-AATTGAA---CGAA-TCAATCTGAAAATA--TCAGGTGCACAGGT-TT-----------A----------C-ATA---GT-A---TA-CAACA-TTT-CC-CA-AA-ATTTGG-T--AAAA-AGTGAACGAACA--G--T---CCGNGAA--AATCTTC-G-GACAA-AAT----GC------G-T-NAC-GGACGGAC----------TG------A---AGTGAAAGCAAT
gi|1 : AGCCCTTTGTTTACCAAAT-AGCATTTAAAGTTTTTAGGTGAAAGCAA-CTACTTGTCCATAACA----GATGTATGGATGAAAAGAAAGACAGACAT-------ATA---GCAAAACCAGT-ACA------TTCCCAAAATCTGTTTTGTGTGG-GAGGATATTGGCAAAATGTACAGAAATATAATGAAA-----------AAATA-TCTACAAC-TGGACAT--GA-CA-T--TCTCAA-AATTGAA---CAAA-TCAATCTGAAAACA--CCAGGTGCACTGGT-TA-----------A----------C-ATA---GC-A---TA-CAAGA-TTT-CTACA-AA-ATCTGG-T--AAAA-AGTGGATGAACA--GGTT---CTTTGAA--AATCTTT-A-GACAA-AAT----GT------G-T-GAA-GGATGGAC----------TG------A---AGTGAAAGCAAT
gi|11 : CTACAAA-TGGCCAC--AAACT-T--TCTTAA-AATTGAA---CAAA-TCAATTTGAGAATA--TCAGGTACACAGGT-TT-----------A----------CAATA---AT-A---TA-CAATATTTT-CT-CA-AA-ATTTGG-T--AAAA-GTT-----AATA--GCCT---CCTTAAA--AAAATTCAA-GACAA-ACT----GC------ACC-TAT-GGATGGA-----------TA------A---AGTGAAAG
gi|12 : aAA-TGACCAT--AA-CT-T--TCTAAA-AATTGAA---CAAG-TCAGTCTGATGATA--TCAGGTACACAAGT-TT-----------A----------C-ATA----T-A---AA-CAACA-CTT-C------------GT-T--AAAA-GGTAAATAAACA--G------CCAAGAA--AATC-TC-GCGACAA-aa
gi|13 : A-CT-T--T-TCAACGACCGAA---CGAAGTCAATCTTAAAATA--CCAGGTGCAT-GGT-TT-----------A----------C-ATG---AT-AGATCA-CAATA-GTA-TC-TATAA-AATTGG-T--AGAA-AGTAATTCAACATCT--T---CCGAGAG--AATGTTC-A-GAAAACAAT----AC------G-TCTAC-GGACAGAC----------gtttaagatttggctatggacaaagtgaatctaatatacccc
gi|14 : tgGATAC-GGCA-ATTGTAAAGAAATA--ATTAAAGTTTTGGATATAAATA-ACTACAAAATGGCCAC--AAACT-T--TCTTAA-AATTGAA---CAAA-TCAAT-TGAGAATA--TCAGGTTC-CAGGTCTT-----------A----------CAATA---AT-A---TACCAATATTTT-CT-CA-AA-ATTTGG-T--AAAA-Aagttg
gi|15 : CAGAT-CATAGGT-TT-----------A----------C-ACA---AT-G---TA-CAG----TT-CCACA-AA-ATTTGG-T--ACAA-AGTGAATAACTA--G--C---CAATGAAAGAATCTCT-G-CACAA-AAT----GT------G-TCTAC-AGATGCACACAAAATAGATG------A---ATTGAAACCAATt
gi|17 : TGGTGAAACCA-----AAAA--ATCTCCAAAAGTTGTTT-GTGGGG-AAGAATACAGGCAAAATGTACAGAAACACAATGAAA-----------ACATT-ACTGCAAA-Ta
gi|21 : taggtgaaatgaccaaacacagaaaCAAA-TGACCAC--AA-CT-T--TCTCAA-AATTGAA---CGAA-TCAACCTGTAACCA--TCAGGTGCA-------T-----------A----------T-ATA---G--G---TA-CA
gi|3 : aAGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGTCCA-AACAAACGGATAGATGGATGAAAAGACAGATAGAtgtac
gi|5 : tgaatgccctcactggcctcatccacattgatgcacaattgtatagctaaacgccaggaagacgtgtttcgacattattcgtgtttcacatcatgatcaatacaatttacaggttaaactaaatcccttaaacccaaataaatatatggaggaaataaaaatcagggcaacaaaatcactccatctaaAGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGTC-A-AACAAACGGATAGATGGATGAAAAGACAGATAGACATGGTGAGGATACTGGCAGAAT--GTCAAAAAATTATCCCCAAAACTT
gi|5 : TGGTGAGGATACTGGCAGAATGT---------CAA---AA-----------AATTA-TCCCCAAA------ACTTAA-CC-TACTTTCAA-AATTGAA---TGAA-TCAATAAGAAAATA---CAGGAGCACAGCT-TT-----------ATCGTGTGTAAC-ATATAGGT-A---TA-CAACA-TTT----CA-AACATT----------A-AGT-----------G--T---GCGAGAA--AATCTTTGG-GACAA-AAT----aacctactttcaaaattgaatgaatcaataagaaaatacaggagcacagctttatcgtgtgtaacatataggtatacaacatttcaaacattaagtgtgcgagaaaatctttgggacaaaat
gi|6 : agctttttggtcaccaccttaacatctaaaacttaatttaaaccaatccattgtcaaacaaacggatagatggatgaaaagacagatagacaAGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGTCCA-AACAAACGGATAGATGGATGAAAAGACAGATAGACATGGTGAGGATACTGGCAGAAT--GT-ACAAAATTATCCCCAAAACTT
gi|6 : aaTGGTGAGGATACTGGCAGAATGTACA-AAAT-----------------------TA-TCCCCAAA------ACTTAA-CTAC--TTTCAA-AATTGAA---TGAA-TCAATAAGAAAATA--ACAGGAGCACAGCT-TTATCGTGTGTACA----------T-ATA---GT-A---TA-CAACA-TTT----CA-AACATT----------A-AGT-----------G--T---GCGAGAA--AATCTTT-G-GACAA-AAT----aactactttcaaaattgaatgaatcaataagaaaataacaggagcacagctttatcgtgtgtacatatagtatacaacatttcaaacattaagtgtgcgagaaaatctttggacaaaat
gi|8 : aaagctttttggtcaccaccttaacatctaaaacttaatttaaaccaatccattgtccaaacaaacggatagatggatgaaaagacagatagacaAATAGTCCAGAAA-AGGCCAT--AC-AT-T--TCTCTA-AATTGAATAACAAA-CTAGCCTGAAAATACCTCA--CGCTCAGGT-TT-----------A----------C-AAA---GTAA---TG-CAACA-TTTGCA-CA-AA-ATTTTG-T--AAAAGACCAAACGAACA--G--TGTATC-AGAA--AATCTTC-A-GAT-A-AAT----GA------G-TGTAT-GGACGCAC----------AGGCAAAAG---AGTGAAAGCA
gi|9 : A-TCTTAAAA-TAAACAC--AA-CT-T---ATCAA-AATTCAA---TAAA-TCAGTGTAAAAATA--AAAAGTGCAT--GT-TG-----------A----------C-ATG---GT-A---TG-TAAAA-TTT-CC----AA-ATCTGGATGAAAAA-AATCAATAATTA--GTAT---CAGTG-C--AATCTCT-A-GAAAA-AATAAAAGCCTACAGA-T-GGCTGGACAGAC----------TG------ACAGGGTGAAA
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): ATGAATGATACCCCCACGAGGCTCATCTATATTGGGGAATATTCAAACTTCTGCATAGCTGACGACCAGAAAGACACGAGTTTCATTCATGTTTCACCTGAGTACAAGTTACACTACATTCCTATGACCTCGACTTTTATCAGTATTCATGGTGTAAGAACGATGAATAACAAAGCATTACACTTTGGTCATCAACTGGAATCTATACGCTTAACAGCGTGAAACTTTTTAATTATCCCAATAAAAGACAGACAGACTTAATACACTTCCAAAAGTTGTGTTTGTGGAGGAGGGCATTAGCAGAAGGCAAAGCAATAT
Unaligned ( gi|4 ): AACACCCGCAGGTTTCATCCATGTTGGGGAATGTTTGAAATCTAAAGGTAAAGACCAAAAAGATATGAGTTTCAACATTGCTCATTATTTACCTGAATACATGTTACAGGCTATACTAAATCCCTTTAACCTCGATGTTTATCAATATTCGAGAAAGGAGAAATGTAAATAATAGTGAAGTGTTTGGTCAATAACTTGAATCTACAATCAACAACATGTATATGTAAAGTCAAGTGATTGTCTCGATAACAAATGGAGGCATGGTAAAA
Unaligned ( gi|7 ): ACAAGGGTGTTACTCCTACGAGGATCAGATCACCCATAAATAGGGACATATTTGAAATATTGCATCGATGAAGACCAAACTTAGGGCATGAGTTTCAACATTATTCAGATTTTATCTTACCGGGTAATACAAGTTACAGGATATATACACATTCCCCTGACCTTTAAATTTATCAATAATCATTAGTGTAGTAAAGAGTGTATGTACAATAAATTATCATCCACT
Unaligned ( gi|10 ): GGACTTACTTGAAATAAATGTATTAAAAAAAAAAAAATTCAGAGCTCGACGAGTTTCAAAATAATCCATATTCTACCAACATGTATATATACAAGTAGCAGTCTACAAAAAAATTCTCTGACATTTTTTATCAATATATCAACAGTCATGGTACATGTATATAAAAGAA
Unaligned ( gi|16 ): AAATTATAAATTGATAACTAGACTCATTCTAACAGGAAATGTCCGTTGAAATGCTGCATAACTGAAGACAAAGACACAAGTTTTAATATCATTCATGTCTCATCTGAATAAAATTTACAGGACAT
Unaligned ( gi|18 ): GATATCCCCGATGAGTCATCTATATTGAGGCATATTTGAAAAATTGCAAAACCGAAGACCACAACGACATCATATGTTCAAGTTTCTGTTGAATACAAACTACAAGACA
Unaligned ( gi|19 ): TTAATACAAGTTACAGACTATACTATGTTTGTTTCATCTTGATTTTTACCAAATACTCATCAAGCATGAAAAAGAGAAAATGCAAATTCTAATATCAAAATATTT
Unaligned ( gi|20 ): AATAGAACTAATACCCCATACAGAGCTCATTCATATTGGAGAATATCTGAAGATCAGAAAAACAGGAATTTATGTTTTACCAGTATGAATACAAGTTACA
Unaligned ( gi|22 ): TATTCATGTTTCACCTGCACACAAGTTATACAATACACTACATTCCTTTGACCTTGATATTT
Unaligned ( gi|23 ): TCACTTTGATTTTCAACAACAATCCTGGTGTAAAAATATAGTA
Unaligned ( gi|24 ): ATACGGCAATTGTAAAGAAATAATAAAGTTTGGATGTAAA
Alignments
lowQualScore : 11 1 1 22222 11 1 1 55555555555555555555 11 3333333333333333333333 222 3333333333333333333333 111 1111 33333333333333333333333333 33333333333333333333333
lowQualScore : 3 33 3 0 2 0 3 6 6 2 77777 2 3 22 0 5 5 6 6 0 5 11111111111111111111 5 1 77 22 22 8 4 55 0 4 777 4 4 999 4 3 3333333333333333333333 7777777777 3 4 8 4 444 4 8 3 4 666 4 1111111111111111111111 66 222 3333 33333333333333333333333333 88888888888888888888888
lowQualScore : . .. . . . . . . . . ..... . . .. . . . . . . . .................... . . .. .. .. . . .. . . ... . . ... . . ...................... .......... . . . . ... . . . . ... . ...................... .. ... .... .......................... .......................
lowQualScore : 2 88 2 0 5 0 2 7 7 0 55555 5 2 22 2 5 5 0 4 8 0 00000000000000000000 7 0 44 00 22 0 0 55 7 0 000 0 1 666 5 6 4444444444444444444444 3333333333 6 8 0 0 444 0 0 2 0 222 0 9999999999999999999999 11 222 9999 77777777777777777777777777 00000000000000000000000
consensus : AGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGTCCA-AACAAACGGATAGATGGATGAAAAGACAGATAGACATGGTGAGGATACTGGCGGAACCAGT-ACAAAATTATCCCCAAAACTTGTTTTGTGTGGTGAGGATACTGGCAGAATGTACAGAAATACAATGAAA-----------AAATA-TCTNCAAA-TGGCCAC--AA-CT-T--TCTCAA-AATTGAA---CGAA-TCAATCTGAAAATA--TCAGGTGCACAGGT-TTA----------C-----------ATA---GT-A---TA-CAACA-TTT-CC-CA-AA-ATTTGG-T--AAAA-AGTNAATAAACA--G--T---CCGNGAA--AATCTTC-G-GACAA----AA----T----GCG-C-TAC--------GGACGGAC----------TG------A---AGTGAAAGCAAT
Reference ( family-846 ) : AGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGTCCA-AACAAACGGATAGATGGATGAAAAGACAGATAGACATGGTGAGGATACTGGCGGAACCAGT-ACAAAATTATCCCCAAAACTTGTTTTGTGTGGTGAGGATACTGGCAGAATGTACAGAAATACAATGAAA-----------AAATA-TCTNCAAA-TGGCCAC--AA-CT-T--TCTCAA-AATTGAA---CGAA-TCAATCTGAAAATA--TCAGGTGCACAGGT-TTA----------C-----------ATA---GT-A---TA-CAACA-TTT-CC-CA-AA-ATTTGG-T--AAAA-AGTAAATAAACA--G--T---CCGNGAA--AATCTTC-G-GACAA----AA----T----GCG-T-TAC--------GGACGGAC----------TG------A---AGTGAAAGCAAT
gi|1 : AGCCCTTTGTTTACCAAAT-AGCATTTAAAGTTTTTAGGTGAAAGCAA-CTACTTGTCCATAACA----GATGTATGGATGAAAAGAAAGACAGACAT-------ATA---GCAAAACCAGT-ACA------TTCCCAAAATCTGTTTTGTGTGG-GAGGATATTGGCAAAATGTACAGAAATATAATGAAA-----------AAATA-TCTACAAC-TGGACAT--GA-CA-T--TCTCAA-AATTGAA---CAAA-TCAATCTGAAAACA--CCAGGTGCACTGGT-TAA----------C-----------ATA---GC-A---TA-CAAGA-TTT-CTACA-AA-ATCTGG-T--AAAA-AGTGGATGAACA--GGTT---CTTTGAA--AATCTTT-A-GACAA----AA----T----GTG-T-GAA--------GGATGGAC----------TG------A---AGTGAAAGCAAT
gi|11 : CTACAAA-TGGCCAC--AAACT-T--TCTTAA-AATTGAA---CAAA-TCAATTTGAGAATA--TCAGGTACACAGGT-TTA----------CA----------ATA---AT-A---TA-CAATATTTT-CT-CA-AA-ATTTGG-T---AAA-AGTTAATAGCC------T---CCTTAAA--AAAATTCAA-GACAA----AC----T----GCACC-TAT--------GGATGGA-----------TA------A---AGTGAAAG
gi|12 : aAA-TGACCAT--AA-CT-T--TCTAAA-AATTGAA---CAAG-TCAGTCTGATGATA--TCAGGTACACAAGT-TTA----------C-----------ATA----T-A---AA-CAACA-CTT-C------------GT-T--AAAA-GGTAAATAAACA--G------CCAAGAA--AATC-TC-GCGACAAGTTTAAGATTT----G-G-C-TAT--------GGACAAAG----------TG------A---aa
gi|13 : A-CT-T--T-TCAACGACCGAA---CGAAGTCAATCTTAAAATA--CCAGGTGCAT-GGT-TTA----------C-----------ATG---AT-AGATCA-CAATA-GTA-TC-TATAA-AATTGG-T--AGAA-AGTAATTCAACATCT--T---CCGAGAG--AATGTTC-A-GAAAAC---AA----T----ACG-TCTAC--------GGACAGAC----------tctaatatacccc
gi|14 : tgGATAC-GGCA-ATTGTAAAGAAATA--ATTAAAGTTTTGGATATAAATA-ACTACAAAATGGCCAC--AAACT-T--TCTTAA-AATTGAA---CAAA-TCAAT-TGAGAATA--TCAGGTTC-CAGGTCTTA----------CA----------ATA---AT-A---TACCAATATTTT-CT-CA-AA-ATTTGG-T--AAAA-Aagttg
gi|15 : CAGAT-CATAGGT-TTA----------C-----------ACA---AT-G---TA-CAG----TT-CCACA-AA-ATTTGG-T--ACAA-AGTGAATAACTA--G--C---CAATGAAAGAATCTCT-G-CACAA----AA----T----GTG-TCTAC--------AGATGCACACAAAATAGATG------A---ATTGAAACCAATt
gi|17 : TGGTGAAACCA-----AAAA--ATCTCCAAAAGTTGTTT-GTGGGG-AAGAATACAGGCAAAATGTACAGAAACACAATGAAA-----------ACATT-ACTGCAAA-Ta
gi|21 : taggtgaaatgaccaaacacagaaaCAAA-TGACCAC--AA-CT-T--TCTCAA-AATTGAA---CGAA-TCAACCTGTAACCA--TCAGGTGCA-------TA----------T-----------ATA---G--G---TA-CA
gi|3 : aAGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGTCCA-AACAAACGGATAGATGGATGAAAAGACAGATAGAtgtac
gi|5 : tgaatgccctcactggcctcatccacattgatgcacaattgtatagctaaacgccaggaagacgtgtttcgacattattcgtgtttcacatcatgatcaatacaatttacaggttaaactaaatcccttaaacccaaataaatatatggaggaaataaaaatcagggcaacaaaatcactccatctaaAGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGTC-A-AACAAACGGATAGATGGATGAAAAGACAGATAGACATGGTGAGGATACTGGCAGAAT--GTCAAAAAATTATCCCCAAAACTT
gi|5 : TGGTGAGGATACTGGCAGAATGT---------CAA---AA-----------AATTA-TCCCCAAA------ACTTAA-CC-TACTTTCAA-AATTGAA---TGAA-TCAATAAGAAAATA---CAGGAGCACAGCT-TTATCGTGTGTAAC-----------ATATAGGT-A---TA-CAACA-TTT-C---A-AACATT----------A-AGT-----------G--T---GCGAGAA--AATCTTTGG-GACAA----AA----T----aacctactttcaaaattgaatgaatcaataagaaaatacaggagcacagctttatcgtgtgtaacatataggtatacaacatttcaaacattaagtgtgcgagaaaatctttgggacaaaat
gi|6 : agctttttggtcaccaccttaacatctaaaacttaatttaaaccaatccattgtcaaacaaacggatagatggatgaaaagacagatagacaAGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGTCCA-AACAAACGGATAGATGGATGAAAAGACAGATAGACATGGTGAGGATACTGGCAGAAT--GT-ACAAAATTATCCCCAAAACTT
gi|6 : aaTGGTGAGGATACTGGCAGAATGTACA-AAAT-----------------------TA-TCCCCAAA------ACTTAA-CTAC--TTTCAA-AATTGAA---TGAA-TCAATAAGAAAATA--ACAGGAGCACAGCT-TTA----------TCGTGTGTACATATA---GT-A---TA-CAACA-TTT-C---A-AACATT----------A-AGT-----------G--T---GCGAGAA--AATCTTT-G-GACAA----AA----T----aactactttcaaaattgaatgaatcaataagaaaataacaggagcacagctttatcgtgtgtacatatagtatacaacatttcaaacattaagtgtgcgagaaaatctttggacaaaat
gi|8 : aaagctttttggtcaccaccttaacatctaaaacttaatttaaaccaatccattgtccaaacaaacggatagatggatgaaaagacagatagacaAATAGTCCAGAAA-AGGCCAT--AC-AT-T--TCTCTA-AATTGAATAACAAA-CTAGCCTGAAAATACCTCA--CGCTCAGGT-TTA----------C-----------AAA---GTAA---TG-CAACA-TTTGCA-CA-AA-ATTTTG-T--AAAAGACCAAACGAACA--G--TGTATC-AGAA--AATCTTC-A-GAT-A----AA----T----GAG-TGTAT--------GGACGCAC----------AGGCAAAAG---AGTGAAAGCA
gi|9 : A-TCTTAAAA-TAAACAC--AA-CT-T---ATCAA-AATTCAA---TAAA-TCAGTGTAAAAATA--AAAAGTGCAT--GT-TGA----------C-----------ATG---GT-A---TG-TAAAA-TTT-CC----AA-ATCTGGATGAAAAA-AATCAATAATTA--GTAT---CAGTG-C--AATCTCT-A-GAAAA----AA----TAAAAGC--C-TACAGATGGCTGGACAGAC----------TG------ACAGGGTGAAA
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): ATGAATGATACCCCCACGAGGCTCATCTATATTGGGGAATATTCAAACTTCTGCATAGCTGACGACCAGAAAGACACGAGTTTCATTCATGTTTCACCTGAGTACAAGTTACACTACATTCCTATGACCTCGACTTTTATCAGTATTCATGGTGTAAGAACGATGAATAACAAAGCATTACACTTTGGTCATCAACTGGAATCTATACGCTTAACAGCGTGAAACTTTTTAATTATCCCAATAAAAGACAGACAGACTTAATACACTTCCAAAAGTTGTGTTTGTGGAGGAGGGCATTAGCAGAAGGCAAAGCAATAT
Unaligned ( gi|4 ): AACACCCGCAGGTTTCATCCATGTTGGGGAATGTTTGAAATCTAAAGGTAAAGACCAAAAAGATATGAGTTTCAACATTGCTCATTATTTACCTGAATACATGTTACAGGCTATACTAAATCCCTTTAACCTCGATGTTTATCAATATTCGAGAAAGGAGAAATGTAAATAATAGTGAAGTGTTTGGTCAATAACTTGAATCTACAATCAACAACATGTATATGTAAAGTCAAGTGATTGTCTCGATAACAAATGGAGGCATGGTAAAA
Unaligned ( gi|7 ): ACAAGGGTGTTACTCCTACGAGGATCAGATCACCCATAAATAGGGACATATTTGAAATATTGCATCGATGAAGACCAAACTTAGGGCATGAGTTTCAACATTATTCAGATTTTATCTTACCGGGTAATACAAGTTACAGGATATATACACATTCCCCTGACCTTTAAATTTATCAATAATCATTAGTGTAGTAAAGAGTGTATGTACAATAAATTATCATCCACT
Unaligned ( gi|10 ): GGACTTACTTGAAATAAATGTATTAAAAAAAAAAAAATTCAGAGCTCGACGAGTTTCAAAATAATCCATATTCTACCAACATGTATATATACAAGTAGCAGTCTACAAAAAAATTCTCTGACATTTTTTATCAATATATCAACAGTCATGGTACATGTATATAAAAGAA
Unaligned ( gi|16 ): AAATTATAAATTGATAACTAGACTCATTCTAACAGGAAATGTCCGTTGAAATGCTGCATAACTGAAGACAAAGACACAAGTTTTAATATCATTCATGTCTCATCTGAATAAAATTTACAGGACAT
Unaligned ( gi|18 ): GATATCCCCGATGAGTCATCTATATTGAGGCATATTTGAAAAATTGCAAAACCGAAGACCACAACGACATCATATGTTCAAGTTTCTGTTGAATACAAACTACAAGACA
Unaligned ( gi|19 ): TTAATACAAGTTACAGACTATACTATGTTTGTTTCATCTTGATTTTTACCAAATACTCATCAAGCATGAAAAAGAGAAAATGCAAATTCTAATATCAAAATATTT
Unaligned ( gi|20 ): AATAGAACTAATACCCCATACAGAGCTCATTCATATTGGAGAATATCTGAAGATCAGAAAAACAGGAATTTATGTTTTACCAGTATGAATACAAGTTACA
Unaligned ( gi|22 ): TATTCATGTTTCACCTGCACACAAGTTATACAATACACTACATTCCTTTGACCTTGATATTT
Unaligned ( gi|23 ): TCACTTTGATTTTCAACAACAATCCTGGTGTAAAAATATAGTA
Unaligned ( gi|24 ): ATACGGCAATTGTAAAGAAATAATAAAGTTTGGATGTAAA
Alignments
lowQualScore : 11 1 1 22222 11 1 1 55555555555555555555 11 3333333333333333333333 22222 3333333333333333333333 111 1111 33333333333333333333333333 33333333333333333333333
lowQualScore : 3 33 3 0 2 0 3 6 6 2 77777 2 3 22 0 5 5 6 6 0 5 11111111111111111111 5 1 77 22 22 8 4 55 0 4 777 4 4 999 4 3 3333333333333333333333 7777777777 3 4 8 00000 4 8 3 4 666 4 0000000000000000000000 66 222 3333 00000000000000000000000000 88888888888888888888888
lowQualScore : . .. . . . . . . . . ..... . . .. . . . . . . . .................... . . .. .. .. . . .. . . ... . . ... . . ...................... .......... . . . ..... . . . . ... . ...................... .. ... .... .......................... .......................
lowQualScore : 2 88 2 0 5 0 2 7 7 0 55555 5 2 22 2 5 5 0 4 8 0 00000000000000000000 7 0 44 00 22 0 0 55 7 0 000 0 1 666 5 6 4444444444444444444444 3333333333 6 8 0 00000 0 0 2 0 222 0 8888888888888888888888 11 222 9999 99999999999999999999999999 00000000000000000000000
consensus : AGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGTCCA-AACAAACGGATAGATGGATGAAAAGACAGATAGACATGGTGAGGATACTGGCGGAACCAGT-ACAAAATTATCCCCAAAACTTGTTTTGTGTGGTGAGGATACTGGCAGAATGTACAGAAATACAATGAAA-----------AAATA-TCTNCAAA-TGGCCAC--AA-CT-T--TCTCAA-AATTGAA---CGAA-TCAATCTGAAAATA--TCAGGTGCACAGGT-TTA----------C-----------ATA---GT-A---TA-CAACA-TTT-CC-CA-AA-ATTTGG-T--AAAA-AGTNAATAAACA--G--T---CCGNGAA--AATCTTC-G-GACAA----AA----T----GCG-C-TAC--------GGACGGAC----------TG------A---AGTGAAAGCAAT
Reference ( family-846 ) : AGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGTCCA-AACAAACGGATAGATGGATGAAAAGACAGATAGACATGGTGAGGATACTGGCGGAACCAGT-ACAAAATTATCCCCAAAACTTGTTTTGTGTGGTGAGGATACTGGCAGAATGTACAGAAATACAATGAAA-----------AAATA-TCTNCAAA-TGGCCAC--AA-CT-T--TCTCAA-AATTGAA---CGAA-TCAATCTGAAAATA--TCAGGTGCACAGGT-TTA----------C-----------ATA---GT-A---TA-CAACA-TTT-CC-CA-AA-ATTTGG-T--AAAA-AGTNAATAAACA--G--T---CCGNGAA--AATCTTC-G-GACAA----AA----T----GCG-C-TAC--------GGACGGAC----------TG------A---AGTGAAAGCAAT
gi|1 : AGCCCTTTGTTTACCAAAT-AGCATTTAAAGTTTTTAGGTGAAAGCAA-CTACTTGTCCATAACA----GATGTATGGATGAAAAGAAAGACAGACAT-------ATA---GCAAAACCAGT-ACA------TTCCCAAAATCTGTTTTGTGTGG-GAGGATATTGGCAAAATGTACAGAAATATAATGAAA-----------AAATA-TCTACAAC-TGGACAT--GA-CA-T--TCTCAA-AATTGAA---CAAA-TCAATCTGAAAACA--CCAGGTGCACTGGT-TAA----------C-----------ATA---GC-A---TA-CAAGA-TTT-CTACA-AA-ATCTGG-T--AAAA-AGTGGATGAACA--GGTT---CTTTGAA--AATCTTT-A-GACAA----AA----T----GTG-T-GAA--------GGATGGAC----------TG------A---AGTGAAAGCAAT
gi|11 : CTACAAA-TGGCCAC--AAACT-T--TCTTAA-AATTGAA---CAAA-TCAATTTGAGAATA--TCAGGTACACAGGT-TTA----------CA----------ATA---AT-A---TA-CAATATTTT-CT-CA-AA-ATTTGG-T---AAA-AGTTAATAGCC------T---CCTTAAA--AAAATTCAA-GACAA----AC----T----GCACC-TAT--------GGATGGA-----------TA------A---AGTGAAAG
gi|12 : aAA-TGACCAT--AA-CT-T--TCTAAA-AATTGAA---CAAG-TCAGTCTGATGATA--TCAGGTACACAAGT-TTA----------C-----------ATA----T-A---AA-CAACA-CTT-C------------GT-T--AAAA-GGTAAATAAACA--G------CCAAGAA--AATC-TC-GCGACAAGTTTAAGATTT----G-G-C-TAT--------GGACAAAG----------TG------A---aa
gi|13 : A-CT-T--T-TCAACGACCGAA---CGAAGTCAATCTTAAAATA--CCAGGTGCAT-GGT-TTA----------C-----------ATG---AT-AGATCA-CAATA-GTA-TC-TATAA-AATTGG-T--AGAA-AGTAATTCAACATCT--T---CCGAGAG--AATGTTC-A-GAAAAC---AA----T----ACGTC-TAC--------GGACAGAC----------tctaatatacccc
gi|14 : tgGATAC-GGCA-ATTGTAAAGAAATA--ATTAAAGTTTTGGATATAAATA-ACTACAAAATGGCCAC--AAACT-T--TCTTAA-AATTGAA---CAAA-TCAAT-TGAGAATA--TCAGGTTC-CAGGTCTTA----------CA----------ATA---AT-A---TACCAATATTTT-CT-CA-AA-ATTTGG-T--AAAA-Aagttg
gi|15 : CAGAT-CATAGGT-TTA----------C-----------ACA---AT-G---TA-CAG----TT-CCACA-AA-ATTTGG-T--ACAA-AGTGAATAACTA--G--C---CAATGAAAGAATCTCT-G-CACAA----AA----T----GTGTC-TAC--------AGATGCACACAAAATAGATG------A---ATTGAAACCAATt
gi|17 : TGGTGAAACCA-----AAAA--ATCTCCAAAAGTTGTTT-GTGGGG-AAGAATACAGGCAAAATGTACAGAAACACAATGAAA-----------ACATT-ACTGCAAA-Ta
gi|21 : taggtgaaatgaccaaacacagaaaCAAA-TGACCAC--AA-CT-T--TCTCAA-AATTGAA---CGAA-TCAACCTGTAACCA--TCAGGTGCA-------TA----------T-----------ATA---G--G---TA-CA
gi|3 : aAGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGTCCA-AACAAACGGATAGATGGATGAAAAGACAGATAGAtgtac
gi|5 : tgaatgccctcactggcctcatccacattgatgcacaattgtatagctaaacgccaggaagacgtgtttcgacattattcgtgtttcacatcatgatcaatacaatttacaggttaaactaaatcccttaaacccaaataaatatatggaggaaataaaaatcagggcaacaaaatcactccatctaaAGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGTC-A-AACAAACGGATAGATGGATGAAAAGACAGATAGACATGGTGAGGATACTGGCAGAAT--GTCAAAAAATTATCCCCAAAACTT
gi|5 : TGGTGAGGATACTGGCAGAATGT---------CAA---AA-----------AATTA-TCCCCAAA------ACTTAA-CC-TACTTTCAA-AATTGAA---TGAA-TCAATAAGAAAATA---CAGGAGCACAGCT-TTATCGTGTGTAAC-----------ATATAGGT-A---TA-CAACA-TTT----CA-AACATT----------A-AGT-----------G--T---GCGAGAA--AATCTTTGG-GACAA----AA----T----aacctactttcaaaattgaatgaatcaataagaaaatacaggagcacagctttatcgtgtgtaacatataggtatacaacatttcaaacattaagtgtgcgagaaaatctttgggacaaaat
gi|6 : agctttttggtcaccaccttaacatctaaaacttaatttaaaccaatccattgtcaaacaaacggatagatggatgaaaagacagatagacaAGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGTCCA-AACAAACGGATAGATGGATGAAAAGACAGATAGACATGGTGAGGATACTGGCAGAAT--GT-ACAAAATTATCCCCAAAACTT
gi|6 : aaTGGTGAGGATACTGGCAGAATGTACA-AAAT-----------------------TA-TCCCCAAA------ACTTAA-CTAC--TTTCAA-AATTGAA---TGAA-TCAATAAGAAAATA--ACAGGAGCACAGCT-TTA----------TCGTGTGTACATATA---GT-A---TA-CAACA-TTT-C---A-AACATT----------A-AGT-----------G--T---GCGAGAA--AATCTTT-G-GACAA----AA----T----aactactttcaaaattgaatgaatcaataagaaaataacaggagcacagctttatcgtgtgtacatatagtatacaacatttcaaacattaagtgtgcgagaaaatctttggacaaaat
gi|8 : aaagctttttggtcaccaccttaacatctaaaacttaatttaaaccaatccattgtccaaacaaacggatagatggatgaaaagacagatagacaAATAGTCCAGAAA-AGGCCAT--AC-AT-T--TCTCTA-AATTGAATAACAAA-CTAGCCTGAAAATACCTCA--CGCTCAGGT-TTA----------C-----------AAA---GTAA---TG-CAACA-TTTGCA-CA-AA-ATTTTG-T--AAAAGACCAAACGAACA--G--TGTATC-AGAA--AATCTTC-A-GAT-A----AA----T----GAG-TGTAT--------GGACGCAC----------AGGCAAAAG---AGTGAAAGCA
gi|9 : A-TCTTAAAA-TAAACAC--AA-CT-T---ATCAA-AATTCAA---TAAA-TCAGTGTAAAAATA--AAAAGTGCAT--GT-TGA----------C-----------ATG---GT-A---TG-TAAAA-TTT-CC----AA-ATCTGGATGAAAAA-AATCAATAATTA--GTAT---CAGTG-C--AATCTCT-A-GAAAA----AA----TAAAAGC--C-TACAGATGGCTGGACAGAC----------TG------ACAGGGTGAAA
blockSeqs : T . T . C . A G C G GTC A A TT . T A A G AATTAAAGTTTTGGATAT G A AT GC TT A A AC C TAA G T CCT A C TCGTGTGTACAT ATAGAT C T T CCAC T C T A GAA G AATTCAACATCTTCCGA AG AA GTTT TAAAAGCCTACAGATGGCT CACAAAATAGATGA
blockSeqs : T . T . C . A G C A CA C A TT T T G G ACAATGAAA . A T AC TT A . . . . . C T A . TCGTGTGTAAC TAGGTA . C T GCAC . C T . A . AAACGAACAGTGTATCA . GC C GATTTGGCTAT CAGGCAAAAG
blockSeqs : T . T . . . A A GT . A . . T G . CAAAA . G T GC . . . . . . . C T A . CA GTAA . T . CTC . . T . A . CAATAATTAGTATCAGT . GG . TGCACCTAT CTGACAG
blockSeqs : . . . . . C T AC . . . . . . . C C A . CA ATA . T . TCT . . T . A . GAATAACTAGCCAAT . A . TACGTCTAC GTGA
blockSeqs : . C T GC . . . . . . . A T A . C ATA . C . CTC . . T . A . AAATAAACAGCCAA . G . TGTGTCTAC TAA
blockSeqs : . A A AA . . . . . . . A T A . C ATG . C . CC . . T . A . TAATAGCCTCCTT . G . TGAGTGTAT
blockSeqs : T T . . . . . . . . C A A . C GTA . C . C . . . . . . GTGCGA . A .
blockSeqs : . . . . . . . . . G A . . T GTA . A . C . . . . . . GTGCGA . A .
blockSeqs : . . . . . . . . . . . C TA . . . C . . . . . .
blockSeqs : . . C GG .
blockSeqCons : AAAA**************** CC*** TGCGTCTAC*****************
originalCons : AGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGTCCA-AACAAACGGATAGATGGATGAAAAGACAGATAGACATGGTGAGGATACTGGCGGAACCAGT-ACAAAATTATCCCCAAAACTTGTTTTGTGTGGTGAGGATACTGGCAGAATGTACAGAAATACAATGAAA-----------AAATA-TCTNCAAA-TGGCCAC--AA-CT-T--TCTCAA-AATTGAA---CGAA-TCAATCTGAAAATA--TCAGGTGCACAGGT-TTA----------C-----------ATA---GT-A---TA-CAACA-TTT-CC-CA-AA-ATTTGG-T--AAAA-AGTNAATAAACA--G--T---CCGNGAA--AATCTTC-G-GACAA----AA----T----GCG-C-TAC--------GGACGGAC----------TG------A---AGTGAAAGCAAT
finalCons : AGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGTCCA-AACAAACGGATAGATGGATGAAAAGACAGATAGACATGGTGAGGATACTGGCGGAACCAGT-ACAAAATTATCCCCAAAACTTGTTTTGTGTGGTGAGGATACTGGCAGAATGTACAGAAATAAAA----------------AAATA-TCTNCAAA-TGGCCAC--AA-CT-T--TCTCAA-AATTGAA---CGAA-TCAATCTGAAAATA--TCAGGTGCACAGGT-TTA----------C-----------ATA---GT-A---TA-CAACA-TTTCC---A-AA-ATTTGG-T--AAAA-AGTNAATAAACA--G--T---CCGNGAA--AATCTTC-G-GACAA----AATGCGTCTAC-----------------GGACGGAC----------TG------A---AGTGAAAGCAAT
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): ATGAATGATACCCCCACGAGGCTCATCTATATTGGGGAATATTCAAACTTCTGCATAGCTGACGACCAGAAAGACACGAGTTTCATTCATGTTTCACCTGAGTACAAGTTACACTACATTCCTATGACCTCGACTTTTATCAGTATTCATGGTGTAAGAACGATGAATAACAAAGCATTACACTTTGGTCATCAACTGGAATCTATACGCTTAACAGCGTGAAACTTTTTAATTATCCCAATAAAAGACAGACAGACTTAATACACTTCCAAAAGTTGTGTTTGTGGAGGAGGGCATTAGCAGAAGGCAAAGCAATAT
Unaligned ( gi|4 ): AACACCCGCAGGTTTCATCCATGTTGGGGAATGTTTGAAATCTAAAGGTAAAGACCAAAAAGATATGAGTTTCAACATTGCTCATTATTTACCTGAATACATGTTACAGGCTATACTAAATCCCTTTAACCTCGATGTTTATCAATATTCGAGAAAGGAGAAATGTAAATAATAGTGAAGTGTTTGGTCAATAACTTGAATCTACAATCAACAACATGTATATGTAAAGTCAAGTGATTGTCTCGATAACAAATGGAGGCATGGTAAAA
Unaligned ( gi|7 ): ACAAGGGTGTTACTCCTACGAGGATCAGATCACCCATAAATAGGGACATATTTGAAATATTGCATCGATGAAGACCAAACTTAGGGCATGAGTTTCAACATTATTCAGATTTTATCTTACCGGGTAATACAAGTTACAGGATATATACACATTCCCCTGACCTTTAAATTTATCAATAATCATTAGTGTAGTAAAGAGTGTATGTACAATAAATTATCATCCACT
Unaligned ( gi|10 ): GGACTTACTTGAAATAAATGTATTAAAAAAAAAAAAATTCAGAGCTCGACGAGTTTCAAAATAATCCATATTCTACCAACATGTATATATACAAGTAGCAGTCTACAAAAAAATTCTCTGACATTTTTTATCAATATATCAACAGTCATGGTACATGTATATAAAAGAA
Unaligned ( gi|16 ): AAATTATAAATTGATAACTAGACTCATTCTAACAGGAAATGTCCGTTGAAATGCTGCATAACTGAAGACAAAGACACAAGTTTTAATATCATTCATGTCTCATCTGAATAAAATTTACAGGACAT
Unaligned ( gi|18 ): GATATCCCCGATGAGTCATCTATATTGAGGCATATTTGAAAAATTGCAAAACCGAAGACCACAACGACATCATATGTTCAAGTTTCTGTTGAATACAAACTACAAGACA
Unaligned ( gi|19 ): TTAATACAAGTTACAGACTATACTATGTTTGTTTCATCTTGATTTTTACCAAATACTCATCAAGCATGAAAAAGAGAAAATGCAAATTCTAATATCAAAATATTT
Unaligned ( gi|20 ): AATAGAACTAATACCCCATACAGAGCTCATTCATATTGGAGAATATCTGAAGATCAGAAAAACAGGAATTTATGTTTTACCAGTATGAATACAAGTTACA
Unaligned ( gi|22 ): TATTCATGTTTCACCTGCACACAAGTTATACAATACACTACATTCCTTTGACCTTGATATTT
Unaligned ( gi|23 ): TCACTTTGATTTTCAACAACAATCCTGGTGTAAAAATATAGTA
Unaligned ( gi|24 ): ATACGGCAATTGTAAAGAAATAATAAAGTTTGGATGTAAA
Alignments
lowQualScore : 11 1 1 22222 11 1 1 7777777777777777777777777 11 1111111111 22222222222 22222222 3333333333333333333333 111 111111 222222222 33333333333333333333333
lowQualScore : 3 33 3 0 2 0 3 6 6 2 77777 2 3 22 0 5 5 6 6 0 5 9999999999999999999999999 7777 1 77 22 22 8 4 55 0 4 777 4 4 999 4 3 5555555555 44444444444 7777777777 3 4 4 55555555 3 4 666 4 0000000000000000000000 66 222 222222 4 8888 0 111111111 88888888888888888888888
lowQualScore : . .. . . . . . . . . ..... . . .. . . . . . . . ......................... .... . .. .. .. . . .. . . ... . . ... . . .......... ........... .......... . . . ........ . . ... . ...................... .. ... ...... . .... . ......... .......................
lowQualScore : 2 88 2 0 5 0 2 7 7 0 55555 5 2 22 2 5 5 0 4 8 0 2222222222222222222222222 3333 0 44 00 22 0 0 55 7 0 000 0 1 666 5 6 9999999999 55555555555 3333333333 6 8 0 66666666 2 0 222 0 8888888888888888888888 11 222 888888 4 3333 7 111111111 00000000000000000000000
consensus : AGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGTCCA-AACAAACGGATAGATGGATGAAAAGACAGATAGACATGGTGAGGATACTGGCGGAACCAGT-ACAAAATTATCCCCAAAACTTGTTTTGTGTGGTGAGGATACTGGCAGAATGTACAGAAATA-----A---A--A-----------AAATA-T--CTNCAAA-TGGCCAC--AA-CT-T--TCTCAA-AATTGAA---CGAA-TCAATCTGAAAATA--TCAGGTGCACAGGT-TT----------AC-----------ATA---GT-A---TA-CAACATT-T--C--CA-AAATTTGG-T--AAAA-AGTNAATAAACA--G--T---CCGNGAAA--ATCTTC-G-GAC------AA-AAT--GCGTCTAC--------GGACGGAC----------TG------A---AGTGAAAGCAAT
Reference ( family-846 ) : AGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGTCCA-AACAAACGGATAGATGGATGAAAAGACAGATAGACATGGTGAGGATACTGGCGGAACCAGT-ACAAAATTATCCCCAAAACTTGTTTTGTGTGGTGAGGATACTGGCAGAATGTACAGAAATA-----A---A--A-----------AAATA-T--CTNCAAA-TGGCCAC--AA-CT-T--TCTCAA-AATTGAA---CGAA-TCAATCTGAAAATA--TCAGGTGCACAGGT-TT----------AC-----------ATA---GT-A---TA-CAACATT-T--C--CA-AAATTTGG-T--AAAA-AGTNAATAAACA--G--T---CCGNGAAA--ATCTTC-G-GAC------AA-AAT--GCGTCTAC--------GGACGGAC----------TG------A---AGTGAAAGCAAT
gi|1 : AGCCCTTTGTTTACCAAAT-AGCATTTAAAGTTTTTAGGTGAAAGCAA-CTACTTGTCCATAACA----GATGTATGGATGAAAAGAAAGACAGACAT-------ATA---GCAAAACCAGT-ACA------TTCCCAAAATCTGTTTTGTGTGG-GAGGATATTGGCAAAATGTACAGAAATATAATGA---A--A-----------AAATA-T--CTACAAC-TGGACAT--GA-CA-T--TCTCAA-AATTGAA---CAAA-TCAATCTGAAAACA--CCAGGTGCACTGGT-TA----------AC-----------ATA---GC-A---TA-CAAGATT-T--CTACA-AAATCTGG-T--AAAA-AGTGGATGAACA--GGTT---CTTTGAAA--ATCTTT-A-GAC------AA-AAT--GTGT-GAA--------GGATGGAC----------TG------A---AGTGAAAGCAAT
gi|11 : --CTACAAA-TGGCCAC--AAACT-T--TCTTAA-AATTGAA---CAAA-TCAATTTGAGAATA--TCAGGTACACAGGT-TT----------ACA----------ATA---AT-A---TA-CAATATT-TTCT--CA-AAATTTGG-T---AAA-AGTTAATAGCC------T---CCTTAAAA--AAATTCAA-GAC------AA-ACT--GCACCTAT--------GGATGGA-----------TA------A---AGTGAAAG
gi|12 : aAA-TGACCAT--AA-CT-T--TCTAAA-AATTGAA---CAAG-TCAGTCTGATGATA--TCAGGTACACAAGT-TT----------AC-----------ATA----T-A---AA-CAACACT-T--C-----------GT-T--AAAA-GGTAAATAAACA--G------CCAAGAAA--ATC-TC-GCGACAAGTTTAA-GAT--TTGGCTAT--------GGACAAAG----------TG------A---aa
gi|13 : A-CT-T--T-TCAACGACCGAA---CGAAGTCAATCTTAAAATA--CCAGGTGCAT-GGT-TT----------AC-----------ATG---AT-AGATCA-CAATAGTAT--C--TATAAAATTGG-T--AGAA-AGTAATTCAACATCT--T---CCGAGAGA--ATGTTC-A-GAA------AACAAT--ACGTCTAC--------GGACAGAC----------tctaatatacccc
gi|14 : tgGATAC-GGCA-ATTGTAAAGAAATA-----ATTAA--AGTTTTGGATATAAATA-A--CTACAAAATGGCCAC--AAACT-T--TCTTAA-AATTGAA---CAAA-TCAAT-TGAGAATA--TCAGGTTC-CAGGTCTT----------ACA----------ATA---AT-A---TACCAATATT-TTCT--CA-AAATTTGG-T--AAAA-Aagttg
gi|15 : CAGAT-CATAGGT-TT----------AC-----------ACA---AT-G---TA-CAG--TT-C--CA-CA-AAATTTGG-T--ACAA-AGTGAATAACTA--G--C---CAATGAAAGAATCTCT-G-CAC------AA-AAT--GTGTCTAC--------AGATGCACACAAAATAGATG------A---ATTGAAACCAATt
gi|17 : TGGTGAAACCA-----AAAA--ATCTCCAAAAGTTGTTT-GTGGGG-AAGAATACAGGCAAAATGTACAGAAACAC----A---ATGA-----------AAACA-TTACTGCAAA-Ta
gi|21 : taggtgaaatgaccaaacacagaaaCAAA-TGACCAC--AA-CT-T--TCTCAA-AATTGAA---CGAA-TCAACCTGTAACCA--TCAGGTGCA-------T----------AT-----------ATA---G--G---TA-CA
gi|3 : aAGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGTCCA-AACAAACGGATAGATGGATGAAAAGACAGATAGAtgtac
gi|5 : tgaatgccctcactggcctcatccacattgatgcacaattgtatagctaaacgccaggaagacgtgtttcgacattattcgtgtttcacatcatgatcaatacaatttacaggttaaactaaatcccttaaacccaaataaatatatggaggaaataaaaatcagggcaacaaaatcactccatctaaAGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGTC-A-AACAAACGGATAGATGGATGAAAAGACAGATAGACATGGTGAGGATACTGGCAGAAT--GTCAAAAAATTATCCCCAAAACTT
gi|5 : TGGTGAGGATACTGGCAGAATGT-------CA-----A---A--A-----------AATTA-T--CCCCAAA------ACTTAA-CC-TACTTTCAA-AATTGAA---TGAA-TCAATAAGAAAATA---CAGGAGCACAGCT-TTATCGTGTGTAAC-----------ATATAGGT-A---TA-CAACATT-T--C--AA-ACATT----------A-AGT-----------G--T---GCGAGAAA--ATCTTTGG-GAC------AA-AAT--aacctactttcaaaattgaatgaatcaataagaaaatacaggagcacagctttatcgtgtgtaacatataggtatacaacatttcaaacattaagtgtgcgagaaaatctttgggacaaaat
gi|6 : agctttttggtcaccaccttaacatctaaaacttaatttaaaccaatccattgtcaaacaaacggatagatggatgaaaagacagatagacaAGCTTTTTGGTCACCACCTTAACATCTAAAACTT--AATTTAAACCAATCCA-TTGTCCA-AACAAACGGATAGATGGATGAAAAGACAGATAGACATGGTGAGGATACTGGCAGAAT--GT-ACAAAATTATCCCCAAAACTT
gi|6 : aaTGGTGAGGATACTGGCAGAATGTACA-AAAT----------------------------TA-T--CCCCAAA------ACTTAA-CTAC--TTTCAA-AATTGAA---TGAA-TCAATAAGAAAATA--ACAGGAGCACAGCT-TT----------ATCGTGTGTACATATA---GT-A---TA-CAACATT-T--C--AA-ACATT----------A-AGT-----------G--T---GCGAGAAA--ATCTTT-G-GAC------AA-AAT--aactactttcaaaattgaatgaatcaataagaaaataacaggagcacagctttatcgtgtgtacatatagtatacaacatttcaaacattaagtgtgcgagaaaatctttggacaaaat
gi|8 : aaagctttttggtcaccaccttaacatctaaaacttaatttaaaccaatccattgtccaaacaaacggatagatggatgaaaagacagatagacaAATAGT--CCAGAAA-AGGCCAT--AC-AT-T--TCTCTA-AATTGAATAACAAA-CTAGCCTGAAAATACCTCA--CGCTCAGGT-TT----------AC-----------AAA---GTAA---TG-CAACATT-TG-CA-CA-AAATTTTG-T--AAAAGACCAAACGAACA--G--TGTATC-AGAAA--ATCTTC-A-GAT-------A-AAT--GAGTGTAT--------GGACGCAC----------AGGCAAAAG---AGTGAAAGCA
gi|9 : A-T--CTTAAAA-TAAACAC--AA-CT-T---ATCAA-AATTCAA---TAAA-TCAGTGTAAAAATA--AAAAGTGCAT--GT-TG----------AC-----------ATG---GT-A---TG-TAAAATT-T--C--C--AAATCTGGATGAAAAA-AATCAATAATTA--GTAT---CAGTG-CA--ATCTCT-A-GAA------AA-AATAAAAGCCTACAGATGGCTGGACAGAC----------TG------ACAGGGTGAAA
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): ATGAATGATACCCCCACGAGGCTCATCTATATTGGGGAATATTCAAACTTCTGCATAGCTGACGACCAGAAAGACACGAGTTTCATTCATGTTTCACCTGAGTACAAGTTACACTACATTCCTATGACCTCGACTTTTATCAGTATTCATGGTGTAAGAACGATGAATAACAAAGCATTACACTTTGGTCATCAACTGGAATCTATACGCTTAACAGCGTGAAACTTTTTAATTATCCCAATAAAAGACAGACAGACTTAATACACTTCCAAAAGTTGTGTTTGTGGAGGAGGGCATTAGCAGAAGGCAAAGCAATAT
Unaligned ( gi|4 ): AACACCCGCAGGTTTCATCCATGTTGGGGAATGTTTGAAATCTAAAGGTAAAGACCAAAAAGATATGAGTTTCAACATTGCTCATTATTTACCTGAATACATGTTACAGGCTATACTAAATCCCTTTAACCTCGATGTTTATCAATATTCGAGAAAGGAGAAATGTAAATAATAGTGAAGTGTTTGGTCAATAACTTGAATCTACAATCAACAACATGTATATGTAAAGTCAAGTGATTGTCTCGATAACAAATGGAGGCATGGTAAAA
Unaligned ( gi|7 ): ACAAGGGTGTTACTCCTACGAGGATCAGATCACCCATAAATAGGGACATATTTGAAATATTGCATCGATGAAGACCAAACTTAGGGCATGAGTTTCAACATTATTCAGATTTTATCTTACCGGGTAATACAAGTTACAGGATATATACACATTCCCCTGACCTTTAAATTTATCAATAATCATTAGTGTAGTAAAGAGTGTATGTACAATAAATTATCATCCACT
Unaligned ( gi|10 ): GGACTTACTTGAAATAAATGTATTAAAAAAAAAAAAATTCAGAGCTCGACGAGTTTCAAAATAATCCATATTCTACCAACATGTATATATACAAGTAGCAGTCTACAAAAAAATTCTCTGACATTTTTTATCAATATATCAACAGTCATGGTACATGTATATAAAAGAA
Unaligned ( gi|16 ): AAATTATAAATTGATAACTAGACTCATTCTAACAGGAAATGTCCGTTGAAATGCTGCATAACTGAAGACAAAGACACAAGTTTTAATATCATTCATGTCTCATCTGAATAAAATTTACAGGACAT
Unaligned ( gi|18 ): GATATCCCCGATGAGTCATCTATATTGAGGCATATTTGAAAAATTGCAAAACCGAAGACCACAACGACATCATATGTTCAAGTTTCTGTTGAATACAAACTACAAGACA
Unaligned ( gi|19 ): TTAATACAAGTTACAGACTATACTATGTTTGTTTCATCTTGATTTTTACCAAATACTCATCAAGCATGAAAAAGAGAAAATGCAAATTCTAATATCAAAATATTT
Unaligned ( gi|20 ): AATAGAACTAATACCCCATACAGAGCTCATTCATATTGGAGAATATCTGAAGATCAGAAAAACAGGAATTTATGTTTTACCAGTATGAATACAAGTTACA
Unaligned ( gi|22 ): TATTCATGTTTCACCTGCACACAAGTTATACAATACACTACATTCCTTTGACCTTGATATTT
Unaligned ( gi|23 ): TCACTTTGATTTTCAACAACAATCCTGGTGTAAAAATATAGTA
Unaligned ( gi|24 ): ATACGGCAATTGTAAAGAAATAATAAAGTTTGGATGTAAA