lowQualScore : 111 11 222222222 11 1111 22222 1 1 1 111 222222222222222 1 11 1111 2 1 33 11111 111111 11 11111 1111111 444444444444444 1 1 111
lowQualScore : 88 888 0 11 444444444 11 7777 0 88888 5 6 0 6 2 222 7 99 1 888888888888888 6 6 1 99 6 99 33 99 4444 6 6 6 0 6 6 6 6 2 4 6 88 5 44444 5 99 6 99 5 4 999999 4 4 4 7 88 7 3 3 7 666 3 00 3 7 55 3 3 33333 4 77777 88 77777 1111111 99999 3 4 4 000000000000000 4 777 6 66 888 5 5 8 3 1 999 5 77 77 6
lowQualScore : .. ... . .. ......... .. .... . ..... . . . . . ... . .. . ............... . . . .. . .. .. .. .... . . . . . . . . . . . .. . ..... . .. . .. . . ...... . . . . .. . . . . ... . .. . . .. . . ..... . ..... .. ..... ....... ..... . . . ............... . ... . .. ... . . . . . ... . .. .. .
lowQualScore : 88 666 8 00 000000000 00 0000 8 22222 8 0 0 4 5 555 3 22 0 555555555555555 7 7 5 22 7 22 33 22 2222 7 7 7 0 7 7 7 7 5 7 7 33 7 33333 7 22 7 22 7 2 222222 0 5 0 3 66 3 6 6 3 444 6 00 6 3 00 6 6 55555 3 66666 66 99999 8888888 11111 6 0 0 777777777777777 4 888 4 99 888 0 0 6 9 4 000 7 99 99 7
consensus : TGCCTGTTT-ACTC-TTTAGCAGAG--TA----T--A-GGCC--ACC----GACAATCTGT-CTCCATCTCACT-CTGNTCTGAGCGTGCCGC-A-CCATGGAC--TGCC-----AG--------TTGTA-TC-CTGCCGC--TTTC-ATCTCGTT--GTC-GA--GAGATCT----TC-TCCAGGTG-TTT-C-T-AG-G-TCGT-CCACGTTTTCT-ATTCCCCTGTG--GA-TTCC-----ATT-TTAG--TG-C--ATGTCTTG---T-TATATT-TCCT-GG-AT--CCTT-CCT-C-AGTTGG-TG---CCC-TA--TCCAG-GTC-CA--C-T-T-TC--TTTTCTT-T---ATTTG--CA----TTGG-------AGG-----AG-G-TA-GTT-G------------GTTTGT-TG---TTCTCCAGAGTTCC--TTG---TTTGTGA-TT-CGGTTTGG-CCAATAAA-T-GTTC--AGGATT--CTA-CGTA
Reference ( gi|2 ) : TGCCTGTTT-ACTC-TTTAGCAGAG--TA----T--A-GGCC--ACC----GACAATCTGT-ATACATCTCACT-CTGGTCTGAGCGTGCCGC-A-CCATGGAC--TGTT-----AG--------TTGTA-TC-CTGCAGC--TTTC-ATCTCGTT--GTT-GA--GAGATCT----TC-TCCAGGTG-TTT-C-T-AG-G-TCGT-CCACGATTTCT-ATTCCCCTGTGCCGA-TTCC-----ATT-TTAG--TG-C--ATGTCTTG---T-TATATT-TTCT-GG-AT--CCTT-CCT-C-AGTTGG-TG---CCC-TA--TCCAG-GTC-CA--C-T-T-TC--TTTTCTT-T---ATTTG--CA----TTGG-------AGG-----AG-G-TA-ATT-A------------CTTTGT-TG---TTCTCCAGAATTCC--TTG---TTTGTGA-TT-CGGTGTAG-CCAATATA-T-GTTT--AGGATT--CTA-CGTA
gi|4 : TGCCTGTT--ACTC-GT-AGCAGAG--TA----TTAG-GGCC--AC------ACAATCTGT-CTCCATCTC-CT-CTG-TTTGAGCGTGC-GC-A-CC---GAC--TGCC-----AG--------TTGTA-TCGCTGCCGC--TTTC-ATCTCGT---GT--GAAGGAGATCT----TC-TCCAGGT--TTT-C-T-AG-G-TCGT-CCACG-TTTCT-ATTCCC-TGTG---A-TTCC-----ATT-TTAG--TG-C--ATGTCCTG---T--ATATT-TCCT-GG-AT--CCTT-TCT-C-AGGTGG-TT---GCC-TA--TCCAG-GTC-CA--CTT-T-TC--TTTTCTT------TTTG--CA----TTGG-------A-G-----AG-G-TA-GTT-G------------GTTTGTATG---TTCTCCAGAGT--C--CTG---TTTG-GA-TT-CGGT-TGG-CCAATTAA-T-GTTTTCAGGATT--CTA-CGTA
gi|7 : cttacttgacttTGCCTGTTTTACT--TTTAGCAGAGAGTA----T--A-GGCCCCACC----GACAATCTGT-CC-CATCTCACT-CTGTTCTGAGCG-GCCGC---CC-TGGAC--TGCC-----AG--------TTATA-TC-CTGCCGC--TTTC-ATCTC-TT--GTTCGA--GAGATCT----TCTTCCAGGTG-TTT-CTT-AG-G-TCGT-CCACGTTTTCTGATTACCCTGT---GA-TTCC-----ATT-gg
gi|9 : acttaacttgacttaTGTTT-ACTCATTTAGCAGAG--TAATACT--G-GCCC--ATCCTCGAACACTCTGTCCTCCATCTCTCTCCCTGTTAGAGCGTGCGCC-ACCCATGAACGTTGTTTCATCAGCCTACCGTCTGTA-TC-ATGCAGC--TTTT-ATCTCGTT--GTC-G---GAGAagt
gi|3 : GTTT-ACT---TTAGCAGAG--TA----T--A-GGCC--ACC----GACCGACTGT-CTCCATCTC-CTGCTGTTCTGAGCGTG-CGCAA-CCATGAA---TGCC-----AG--------TGGTA-TC-CT-C-GC--TTTCAATCTCGTT--GTC-GA--GA-AT-T----TC-TACAGGTG-TTT-T-TCAG-G-TC-T-CC---GTTTCT-ATTCCCCTGTG--GATTTCC-----ATT-TTAG--GG-C--ATGGTCTG---TGTATATG-TCAT-GG-A----CTT-ATT-C-AGTT-G-TG---CGC-TA--TCCAG-GTCTCA--C-TGT-TC--TTGTC-T-T---ATTTGA-CA----TTGA-------AGG-----AG-G-TA-GCT-G------------GGTTGT-TG---TTCTCCAGG--TCC--TTG---TTTGTGA--T-CGGTTTGG-CCAATAAG-T--TTC--ACGA-T--CTAGCGT
gi|1 : cttattgaacttatgaacTT-ACTC-TTTAGCAGAG--TA----T--AAGGCC--ACC----GACAATC-G--ATACATCTCACT-CTGGT-TGAGCGTGCCGC-A-CCATGGAC--TGTT-----AG--------TTGTA-TC-CTGCAGC--TTTC-ATCTCGTT--GTT-GA--GAGATCT----T--TCCAGGTGTTTT-C-T-AG-GTTCGT-CCACGATTTCT-ATTCCCCTGTGCCGA-TTCC-----ATT-TTAG--TGCC--ATGTCTTG---T-TATTAT-TTCT-GGCATC-CCTT-CCT-C-GGTTTG--G---CCC-TA--TCCAG-GTC-CA--C-T-T-TC--TTTTCTTAT---ATTTG--CA----TTGG-------AGG-----AG-G-TA-ATT-A------------CTTTG--TG---TTCTCCAGAA-TCC--TTG---TTTGTGA-TT-CGG-GTAGCCCAATATA-TGGTTT--AGGATTTCTTA-CGT
gi|6 : gCGTGCCGC-A-CCATGGAC--TACTC----AG--------CGGAAGTC-CTGCTGCATTTCC-AGCTCGTTCTGTC-GA--GAG--CTGAGATC-TCCAC-TG-TTT-CGT-AG-G-TCGTTCCACATTTCCT-TTTCCCCTGTG-----TTCC-----ATT-GTAG--TG-C--ATGCCTGGATTC-TATATT-TCCTCGG-AT--CCTTTCCT-C-AGTTGG-TG---CCCTTATTTCCAGAGTC-CA--C-T-T-TA--T------------CTTG--CA-----TGG-------AGG-----AGCG-TA-ATT-taggcacctgtatgaactgatctggattggcgattgtctgtttgctgctgttgttcgccattgtttctgaacgtataagagatagccttacgtttgagtttgaagatcttgcatttttggtgttctgctgatttctctggctttc
gi|5 : aCT----TC-TCCAGGTG-TTTACGT-AGCG-TCGT-CCA-GTTTTCT-ATTCCTCTGTG--GA-CTCTCTCCAATTGTTAGTTTG-CATATGTC-TG---T-TATATTCTCCT-GGTATTCCTTT-TCT-C-ACTGGA-TGCGCCCC-TAGTCCCAG-GTCTCAGGC-T-TATT--TTTTCGT-TATAATTTAATCAGTTCTCGG-------GGGAAGATAG-G-TAGATT-AGAGAAATTTGATCTGTGT-CG----TCTCAAGAGTTCCCATTGATATTTGTGA-TT-g
gi|14 : agtcGG-TTCC-----ATT-GTAG--TG-C--ATG-CTTG---T-----TT-TCCT-GG-AT--CC-T-CCT-C-AGTTGG-T----CGC-TA--T-CAG-G---------------------CTT-T---ATTTG--CT----TTGGAGGACTCAGG-----AG-G-TT-ATT-G------------GCTTGT-TG---TTCTCCAGAGTTCatcgtttggtctttggccccataatttcagtgaagttttctacgtcgagcaagttgttgatgaatgaatcctaggatatgg
gi|8 : ttATATT-TCCT-GG-AT--C-TT-CCTAC-AGTTGAATG---CCC-TA--TCCAG-GTC-CA--C-T-T-TCCCTTTTCTT-T---AATTG--CA----TTGG-------AGG-----AG-G-TA-ATTGG------------TTTTGT-TG---TTCTCCAG-ATTCC--TTG---TTTGTGA-TTCCGGT-TGGCCCAATAAA-T-GTTT--AGGATT--CTA-
gi|11 : TATT-TCCT-GG-AT--CCTTGTCT-C-AGTTGG-TG---CC--TA--TCCAG-GTC-AA--C-T-T--C--TTTTCTT-T---ATTTG--CA----ATGG-------AGG-----AG-G-TA-GTT-G------------GTTTGT-TG---TTCTTCAGAGTTCC--TTG---TTTGTGA-TT-CGGTTTGG-CCAATAAC-T-GTTC--AGGATT--CTA-ac
gi|10 : TATT-TCCT-GG-AT--CCTT-TCT-C-AGTTGG-TG---CCC-TA--TCCAG-GTC-CA--C-T-T-----TTTTC-T-T---ATTTG--CA----ATGG-------AGG-----AG-GTTA-GTT-G-------------GTTGT-TGTGTTTCTTCAGAGTTCC--TTG---TTTGTGATTT-CGGTTTGG-CCAATAAC-T-GTTC--AGGATT--CTA-
gi|12 : TATT-TCCT-G--AT--CTTT-CTT-AGAGTTGGGTG---CC--TA--TC--G-GTC-CA--C-T-T-TC--TTTT-TT-T---ATTTG--CA----TTGG-------AGG-----AG---TA-GTT-G------------GTTTTG-TG---TTCTC--GAGTTCC--TTG---TTTATGA-TT-CGGTTTGG-CCAATAAATT-GTTC--AGGTTT--
gi|16 : -AT--CCTT-TCT-C-AGTTGG-TG---CCC-TA--TCCAG-G----------------------TT-T---ATTTG--CA----TTGG-------AGG-----AG-agt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): TCTGTTGATGAACTTGCACTGGATGCGTTCTGTTGCTCTGTGTCGTCATGTTTCTGATCCGATTAAGAACAGCCTTTGTTTGAGTGAAGTCTTTGGTTCTTGGTGTTTCTGCTGATTTTCGCTTCC
Unaligned ( gi|15 ): ATGTTGATTGAATGACTGGACTGGCGTTGTTTGTTTGCTGCTGTTGTTCGCATGTTTTGATCGTATATAGAGAAAGTTTACGTTTGAGTTGAAG
Alignments
lowQualScore : 11 111111111 1111 111 1 11 1 333333333333333 1111 1 11111 11111 111111 11111 1111111 11111111111 111111 1111
lowQualScore : 6 33 99 777777777 99 4444 222 1 55 1 0 0 999 5 555555555555555 5 5 5 3 77 5 77 5 1 77 2222 5 5 5 7 5 5 5 5 4 1 0 5 77777 22222 5 77 5 77 3 2 333333 3 3 3 6 77 3 3 3 3 6 555 3 99 3 6 44 3 3 00000 3 66666 77 7777 0000000 88888 3 3 77777777777 4 77 777 55 3 66 777 777777 4 66 4 4 1111 4 9999 66 5
lowQualScore : . .. .. ......... .. .... ... . .. . . . ... . ............... . . . . .. . .. . . .. .... . . . . . . . . . . . . ..... ..... . .. . .. . . ...... . . . . .. . . . . . ... . .. . . .. . . ..... . ..... .. .... ....... ..... . . ........... . .. ... .. . .. ... ...... . .. . . .... . .... .. .
lowQualScore : 7 33 22 000000000 22 2222 333 7 88 0 8 7 444 0 777777777777777 7 7 7 0 99 7 99 7 7 99 1111 7 7 7 1 7 7 7 7 3 9 1 7 11111 55555 0 99 7 99 6 3 999999 6 6 6 7 99 3 3 3 3 7 888 3 22 3 7 66 3 3 88888 2 22222 99 1111 8888888 33333 3 6 33333333333 0 22 000 55 2 11 888 222222 4 11 4 4 7777 4 4444 11 0
consensus : TGCCTGTTT-ACTC-TTTAGCAGAG--TA----T--A-GGCC--ACC----GACAATCTGT-CTCCATCTCACT--CTGTTCTGAGCGTGCCGC-A-CCATGGA---------------CTGC-CAGTTGTA-TC-CTGCCGC--TTTC-ATCTCGT--TG-TCGA--GAGATCT----TC-TCCAGGTG-TTT-C-T-AG-G-TCG-TCCACGTTTTCT-ATTCCCCTGTG--GA-TTCC-----ATT-TTAG--TG-C--ATGTCTTG---T-TA-TATT-TCCT-GG-AT--CC-TT-CCT-C-AGTTGG-TG---CCC-TA--TCCAG-GTC-CA--C-T-T-TC--TTTTCTT-T---ATTTG--CA----TTGG-------AGG-----AG-G-TAG-----------TTGG-TTTGT-TG---T--TCTCCAGAGTTCC--TTG---TTTGTGA------TT-CGG--TTTGG-CCAATAAA-T-G--TTCAG-GA----TT--CTA-CGTA
Reference ( family-8319 ) : TGCCTGTTT-ACTC-TTTAGCAGAG--TA----T--A-GGCC--ACC----GACAATCTGT-CTCCATCTCACT--CTGNTCTGAGCGTGCCGC-A-CCATGGA---------------CTGC-CAGTTGTA-TC-CTGCCGC--TTTC-ATCTCGT--TG-TCGA--GAGATCT----TC-TCCAGGTG-TTT-C-T-AG-G-TCG-TCCACGTTTTCT-ATTCCCCTGTG--GA-TTCC-----ATT-TTAG--TG-C--ATGTCTTG---T-TA-TATT-TCCT-GG-AT--CC-TT-CCT-C-AGTTGG-TG---CCC-TA--TCCAG-GTC-CA--C-T-T-TC--TTTTCTT-T---ATTTG--CA----TTGG-------AGG-----AG-G-TAG-----------TTGG-TTTGT-TG---T--TCTCCAGAGTTCC--TTG---TTTGTGA------TT-CGG--TTTGG-CCAATAAA-T-G--TTCAG-GA----TT--CTA-CGTA
gi|1 : TT-ACTC-TTTAGCAGAG--TA----T--AAGGCC--ACC----GACAATCGAT-A--CATCTCACT--CTGGT-TGAGCGTGCCGC-A-CCATGGA---------------CTGT-TAGTTGTA-TC-CTGCAGC--TTTC-ATCTCGT--TG-TTGA--GAGATCT----T--TCCAGGTGTTTT-C-T-AG-GTTCG-TCCACGATTTCT-ATTCCCCTGTGCCGA-TTCC-----ATT-TTAG--TGCC--ATGTCTTG---T-TATTATT-T-CT-GGCATC-CC-TT-CCT-C-GGTTTG--G---CCC-TA--TCCAG-GTC-CA--C-T-T-TC--TTTTCTTAT---ATTTG--CA----TTGG-------AGG-----AG-G-TAA-----------TTAC-TTTG--TG---T--TCTCCAGAA-TCC--TTG---TTTGTGA------TT-CGG--GTAGC-CCAATATA-TGG--TTTAG-GA----TTTCTTA-CGT
gi|10 : g-TATT-TCCT-GG-AT--CC-TT-TCT-C-AGTTGG-TG---CCC-TA--TCCAG-GTC-CA--C-T-T-----TTTTC-T-T---ATTTG--CA----ATGG-------AGG-----AG-GTTAG-----------TTGG--TTGT-TGTGTT--TCTTCAGAGTTCC--TTG---TTTGTGAT-----TT-CGG--TTTGG-CCAATAAC-T-G--TTCAG-GA----TT--CTA-taggcacctgtatgaactgatctggattggcgattgtctgtttgctgctgttgttcgccattgtttctgaacgtataagagatagccttacgtttgagtttgaagatcttgcatttttggtgttctgctgatttctctggctttc
gi|11 : -TATT-TCCT-GG-AT--CC-TTGTCT-C-AGTTGG-TG---CC--TA--TCCAG-GTC-AA--C-T-T--C--TTTTCTT-T---ATTTG--CA----ATGG-------AGG-----AG-G-TAG-----------TTGG-TTTGT-TG---T--TCTTCAGAGTTCC--TTG---TTTGTGA------TT-CGG--TTTGG-CCAATAAC-T-G--TTCAG-GA----TT--CTA-
gi|12 : -TATT-TCCT-G--AT--CT-TT-CTT-AGAGTTGGGTG---CC--TA--TC--G-GTC-CA--C-T-T-TC--TTTT-TT-T---ATTTG--CA----TTGG-------AGG-----AG---TAG-----------TTGG-TTTTG-TG---T--TCTC--GAGTTCC--TTG---TTTATGA------TT-CGG--TTTGG-CCAATAAATT-G--TTCAG-GT----TT--
gi|14 : --GG-TTCC-----ATT-GTAG--TG-C--ATG-CTTG---T------TT-TCCT-GG-AT--CC--T-CCT-C-AGTTGG-T----CGC-TA--T-CAG-G---------------------CTT-T---ATTTG--CT----TTGGAGGACTCAGG-----AG-G-TTA-----------TTGG-CTTGT-TG---T--TCTCCAGAGTTCagt
gi|16 : tt-AT--CC-TT-TCT-C-AGTTGG-TG---CCC-TA--TCCAG-G----------------------TT-T---ATTTG--CA----TTGG-------AGG-----AG-
gi|2 : TGCCTGTTT-ACTC-TTTAGCAGAG--TA----T--A-GGCC--ACC----GACAATCTGT-ATACATCTCACT--CTGGTCTGAGCGTGCCGC-A-CCATGGA---------------CTGT-TAGTTGTA-TC-CTGCAGC--TTTC-ATCTCGT--TG-TTGA--GAGATCT----TC-TCCAGGTG-TTT-C-T-AG-G-TCG-TCCACGATTTCT-ATTCCCCTGTGCCGA-TTCC-----ATT-TTAG--TG-C--ATGTCTTG---T-TA-TATT-TTCT-GG-AT--CC-TT-CCT-C-AGTTGG-TG---CCC-TA--TCCAG-GTC-CA--C-T-T-TC--TTTTCTT-T---ATTTG--CA----TTGG-------AGG-----AG-G-TAA-----------TTAC-TTTGT-TG---T--TCTCCAGAATTCC--TTG---TTTGTGA------TT-CGG--TGTAG-CCAATATA-T-G--TTTAG-GA----TT--CTA-CGTA
gi|3 : GTTT-ACT---TTAGCAGAG--TA----T--A-GGCC--ACC----GACCGACTGT-CTCCATCTC-CTG-CTGTTCTGAGCGTG-CGCAA-CCATGAA----------------TGC-CAGTGGTA-TC-CT--CGC--TTTCAATCTCGT--TG-TCGA--GA-AT-T----TC-TACAGGTG-TTT-T-TCAG-G-TC--TCCG---TTTCT-ATTCCCCTGTG--GATTTCC-----ATT-TTAG--GG-C--ATGGTCTG---TGTA-TATG-TCAT-GG-A----C-TT-ATT-C-AGTT-G-TG---CGC-TA--TCCAG-GTCTCA--C-TGT-TC--TTGTC-T-T---ATTTGA-CA----TTGA-------AGG-----AG-G-TAG-----------CTGG-GTTGT-TG---T--TCTCCAGG--TCC--TTG---TTTGTGA-------T-CGG--TTTGG-CCAATAAG-T----TTCAC-GA-----T--CTAGCGT
gi|4 : cttattgaacttatgaacTGCCTGTT--ACTC-GT-AGCAGAG--TA----TTAG-GGCC--AC------ACAATCTGT-CTCCATCTC-CT--CTGTT-TGAGCGTGC-GC-A-CC---GA---------------CTGC-CAGTTGTA-TCGCTGCCGC--TTTC-ATCTCGT---G-T-GAAGGAGATCT----TC-TCCAGGT--TTT-C-T-AG-G-TCG-TCCACGTTT-CT-ATTCCC-TGTG---A-TTCC-----ATT-TTAG--TG-C--ATGTCCTG---T--A-TATT-TCCT-GG-AT--CC-TT-TCT-C-AGGTGG-TT---GCC-TA--TCCAG-GTC-CA--CTT-T-TC--TTTTCTT------TTTG--CA----TTGG-------A-G-----AG-G-TAG-----------TTGG-TTTGTATG---T--TCTCCAGAGT--C--CTG---TTTG-GA------TT-CGG---TTGG-CCAATTAA-T-GTTTTCAG-GA----TT--CTA-CGTA
gi|5 : cttacttgacttCT----TC-TCCAGGTG-TTTACGT-AGCG-TCG-TCCA-GTTTTCT-ATTCCTCTGTG--GA-CTCTCTCCAATTGTTAGTTTG-CATATGTC-TG---T-TA-TATTCTCCT-GGTATTCCT-TT-TCT-C-ACTGGA-TGCGCCCC-TAGTCCCAG-GTCTCAGGC-T-TATT--TTTTCGT-TATAATTTAATCAGTTCTCGG-------GGGAAGATAG-G-TAGATTAGAGAAATTTGA-TCTG--TG---TCGTCTCAAGAGTTCCCATTGATATTTGTGATTATCGTT-TGGTCTTTGGCCCCAT-AA-T----TTCAGTGAAGTTTT--CTA-CGTgg
gi|6 : agtcCGTGCCGC-A-CCATGGA---------------CTACTCAGCGGAAGTC-CTGCTGCATTTCC-AGCTCGTTCTG-TCGA--GAG--CTGAGATC-TCCA-CTG-TTT-CGT-AG-G-TCGTTCCACATTTCCT-TTTCCCCTGTG-----TTCC-----ATT-GTAG--TG-C--ATGCCTGGATTC-TA-TATT-TCCTCGG-AT--CCTTT-CCT-C-AGTTGG-TG---CCCTTATTTCCAGAGTC-CA--C-T-T-TA--T------------CTTG--CA-----TGG-------AGG-----AGCG-TAA-----------TTGcgagcaagttgttgatgaatgaatcctaggatatgg
gi|7 : aTGCCTGTTTTACT--TTTAGCAGAGAGTA----T--A-GGCCCCACC----GACAATCTGT-C-CCATCTCACT--CTGTTCTGAGCG-GCCGC---CC-TGGA---------------CTGC-CAGTTATA-TC-CTGCCGC--TTTC-ATCTC-T--TGTTCGA--GAGATCT----TCTTCCAGGTG-TTT-CTT-AG-G-TCG-TCCACGTTTTCTGATTACCCTGT---GA-TTCC-----ATT-
gi|8 : acttaacttgacttaA-TATT-TCCT-GG-AT--C--TT-CCTAC-AGTTGAATG---CCC-TA--TCCAG-GTC-CA--C-T-T-TCCCTTTTCTT-T---AATTG--CA----TTGG-------AGG-----AG-G-TAA-----------TTGGTTTTGT-TG---T--TCTCCAGA-TTCC--TTG---TTTGTGA------TTCCGG--TTGGC-CCAATAAA-T-G--TTTAG-GA----TT--CTA-agt
gi|9 : TGTTT-ACTCATTTAGCAGAG--TAATACT--G-GCCC--ATCCTCGAACACTCTGTCCTCCATCTCTCTCCCTGTTA-GAGCGTGCGCC-ACCCATGAACGTTGTTTCATCAGCCTAC-CGTCTGTA-TC-ATGCAGC--TTTT-ATCTCGT--TG-TCG---GAGAac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCTGTTGATGAACTTGCACTGGATGCGTTCTGTTGCTCTGTGTCGTCATGTTTCTGATCCGATTAAGAACAGCCTTTGTTTGAGTGAAGTCTTTGGTTCTTGGTGTTTCTGCTGATTTTCGCTTCC
Unaligned ( gi|15 ): ATGTTGATTGAATGACTGGACTGGCGTTGTTTGTTTGCTGCTGTTGTTCGCATGTTTTGATCGTATATAGAGAAAGTTTACGTTTGAGTTGAAG
Alignments
lowQualScore : 11 111111111 1111 111 1 11 1 333333333333333 1111 1 11111 11111 111111 11111 1111111 11111111111 111111 1111
lowQualScore : 6 33 99 777777777 99 4444 222 1 55 0 0 999 5 555555555555555 5 5 5 3 77 5 77 5 1 77 2222 5 5 5 7 5 5 5 5 4 1 0 5 77777 22222 5 77 5 77 3 2 333333 3 3 3 6 77 3 3 3 3 6 555 3 99 3 6 44 3 3 00000 3 66666 77 7777 0000000 88888 3 3 77777777777 4 77 777 55 3 66 777 777777 4 66 4 4 1111 4 9999 66 5
lowQualScore : . .. .. ......... .. .... ... . .. . . ... . ............... . . . . .. . .. . . .. .... . . . . . . . . . . . . ..... ..... . .. . .. . . ...... . . . . .. . . . . . ... . .. . . .. . . ..... . ..... .. .... ....... ..... . . ........... . .. ... .. . .. ... ...... . .. . . .... . .... .. .
lowQualScore : 7 33 22 000000000 22 2222 333 7 88 8 7 444 0 777777777777777 7 7 7 0 99 7 99 7 7 99 1111 7 7 7 1 7 7 7 7 3 9 1 7 11111 55555 0 99 7 99 6 3 999999 6 6 6 7 99 3 3 3 3 7 888 3 22 3 7 66 3 3 88888 2 22222 99 1111 8888888 33333 3 6 33333333333 0 22 000 55 2 11 888 222222 4 11 4 4 7777 4 4444 11 0
consensus : TGCCTGTTT-ACTC-TTTAGCAGAG--TA----T--A-GGCC--ACC----GACAATCTGT-CTCCATCTCACT--CTGTTCTGAGCGTGCCGC-A-CCATGGA---------------CTGC-CAGTTGTA-TC-CTGCCGC--TTTC-ATCTCGT--TG-TCGA--GAGATCT----TC-TCCAGGTG-TTT-C-T-AG-G-TCG-TCCACGTTTTCT-ATTCCCCTGTG--GA-TTCC-----ATT-TTAG--TG-C--ATGTCTTG---T-TA-TATT-TCCT-GG-AT--CC-TT-CCT-C-AGTTGG-TG---CCC-TA--TCCAG-GTC-CA--C-T-T-TC--TTTTCTT-T---ATTTG--CA----TTGG-------AGG-----AG-G-TAG-----------TTGG-TTTGT-TG---T--TCTCCAGAGTTCC--TTG---TTTGTGA------TT-CGG--TTTGG-CCAATAAA-T-G--TTCAG-GA----TT--CTA-CGTA
Reference ( family-8319 ) : TGCCTGTTT-ACTC-TTTAGCAGAG--TA----T--A-GGCC--ACC----GACAATCTGT-CTCCATCTCACT--CTGTTCTGAGCGTGCCGC-A-CCATGGA---------------CTGC-CAGTTGTA-TC-CTGCCGC--TTTC-ATCTCGT--TG-TCGA--GAGATCT----TC-TCCAGGTG-TTT-C-T-AG-G-TCG-TCCACGTTTTCT-ATTCCCCTGTG--GA-TTCC-----ATT-TTAG--TG-C--ATGTCTTG---T-TA-TATT-TCCT-GG-AT--CC-TT-CCT-C-AGTTGG-TG---CCC-TA--TCCAG-GTC-CA--C-T-T-TC--TTTTCTT-T---ATTTG--CA----TTGG-------AGG-----AG-G-TAG-----------TTGG-TTTGT-TG---T--TCTCCAGAGTTCC--TTG---TTTGTGA------TT-CGG--TTTGG-CCAATAAA-T-G--TTCAG-GA----TT--CTA-CGTA
gi|1 : TT-ACTC-TTTAGCAGAG--TA----T--AAGGCC--ACC----GACAATCGAT-A--CATCTCACT--CTGGT-TGAGCGTGCCGC-A-CCATGGA---------------CTGT-TAGTTGTA-TC-CTGCAGC--TTTC-ATCTCGT--TG-TTGA--GAGATCT----T--TCCAGGTGTTTT-C-T-AG-GTTCG-TCCACGATTTCT-ATTCCCCTGTGCCGA-TTCC-----ATT-TTAG--TGCC--ATGTCTTG---T-TATTATT-T-CT-GGCATC-CC-TT-CCT-C-GGTTTG--G---CCC-TA--TCCAG-GTC-CA--C-T-T-TC--TTTTCTTAT---ATTTG--CA----TTGG-------AGG-----AG-G-TAA-----------TTAC-TTTG--TG---T--TCTCCAGAA-TCC--TTG---TTTGTGA------TT-CGG--GTAGC-CCAATATA-TGG--TTTAG-GA----TTTCTTA-CGT
gi|10 : g-TATT-TCCT-GG-AT--CC-TT-TCT-C-AGTTGG-TG---CCC-TA--TCCAG-GTC-CA--C-T-T-----TTTTC-T-T---ATTTG--CA----ATGG-------AGG-----AG-GTTAG-----------TTGG--TTGT-TGTGTT--TCTTCAGAGTTCC--TTG---TTTGTGAT-----TT-CGG--TTTGG-CCAATAAC-T-G--TTCAG-GA----TT--CTA-taggcacctgtatgaactgatctggattggcgattgtctgtttgctgctgttgttcgccattgtttctgaacgtataagagatagccttacgtttgagtttgaagatcttgcatttttggtgttctgctgatttctctggctttc
gi|11 : -TATT-TCCT-GG-AT--CC-TTGTCT-C-AGTTGG-TG---CC--TA--TCCAG-GTC-AA--C-T-T--C--TTTTCTT-T---ATTTG--CA----ATGG-------AGG-----AG-G-TAG-----------TTGG-TTTGT-TG---T--TCTTCAGAGTTCC--TTG---TTTGTGA------TT-CGG--TTTGG-CCAATAAC-T-G--TTCAG-GA----TT--CTA-
gi|12 : -TATT-TCCT-G--AT--CT-TT-CTT-AGAGTTGGGTG---CC--TA--TC--G-GTC-CA--C-T-T-TC--TTTT-TT-T---ATTTG--CA----TTGG-------AGG-----AG---TAG-----------TTGG-TTTTG-TG---T--TCTC--GAGTTCC--TTG---TTTATGA------TT-CGG--TTTGG-CCAATAAATT-G--TTCAG-GT----TT--
gi|14 : --GG-TTCC-----ATT-GTAG--TG-C--ATG-CTTG---T------TT-TCCT-GG-AT--CC--T-CCT-C-AGTTGG-T----CGC-TA--T-CAG-G---------------------CTT-T---ATTTG--CT----TTGGAGGACTCAGG-----AG-G-TTA-----------TTGG-CTTGT-TG---T--TCTCCAGAGTTCagt
gi|16 : tt-AT--CC-TT-TCT-C-AGTTGG-TG---CCC-TA--TCCAG-G----------------------TT-T---ATTTG--CA----TTGG-------AGG-----AG-
gi|2 : TGCCTGTTT-ACTC-TTTAGCAGAG--TA----T--A-GGCC--ACC----GACAATCTGT-ATACATCTCACT--CTGGTCTGAGCGTGCCGC-A-CCATGGA---------------CTGT-TAGTTGTA-TC-CTGCAGC--TTTC-ATCTCGT--TG-TTGA--GAGATCT----TC-TCCAGGTG-TTT-C-T-AG-G-TCG-TCCACGATTTCT-ATTCCCCTGTGCCGA-TTCC-----ATT-TTAG--TG-C--ATGTCTTG---T-TA-TATT-TTCT-GG-AT--CC-TT-CCT-C-AGTTGG-TG---CCC-TA--TCCAG-GTC-CA--C-T-T-TC--TTTTCTT-T---ATTTG--CA----TTGG-------AGG-----AG-G-TAA-----------TTAC-TTTGT-TG---T--TCTCCAGAATTCC--TTG---TTTGTGA------TT-CGG--TGTAG-CCAATATA-T-G--TTTAG-GA----TT--CTA-CGTA
gi|3 : GTTT-ACT---TTAGCAGAG--TA----T--A-GGCC--ACC----GACCGACTGT-CTCCATCTC-CTG-CTGTTCTGAGCGTG-CGCAA-CCATGAA----------------TGC-CAGTGGTA-TC-CT--CGC--TTTCAATCTCGT--TG-TCGA--GA-AT-T----TC-TACAGGTG-TTT-T-TCAG-G-TC--TCCG---TTTCT-ATTCCCCTGTG--GATTTCC-----ATT-TTAG--GG-C--ATGGTCTG---TGTA-TATG-TCAT-GG-A----C-TT-ATT-C-AGTT-G-TG---CGC-TA--TCCAG-GTCTCA--C-TGT-TC--TTGTC-T-T---ATTTGA-CA----TTGA-------AGG-----AG-G-TAG-----------CTGG-GTTGT-TG---T--TCTCCAGG--TCC--TTG---TTTGTGA-------T-CGG--TTTGG-CCAATAAG-T----TTCAC-GA-----T--CTAGCGT
gi|4 : cttattgaacttatgaacTGCCTGTT--ACTC-GT-AGCAGAG--TA----TTAG-GGCC--AC------ACAATCTGT-CTCCATCTC-CT--CTGTT-TGAGCGTGC-GC-A-CC---GA---------------CTGC-CAGTTGTA-TCGCTGCCGC--TTTC-ATCTCGT---G-T-GAAGGAGATCT----TC-TCCAGGT--TTT-C-T-AG-G-TCG-TCCACGTTT-CT-ATTCCC-TGTG---A-TTCC-----ATT-TTAG--TG-C--ATGTCCTG---T--A-TATT-TCCT-GG-AT--CC-TT-TCT-C-AGGTGG-TT---GCC-TA--TCCAG-GTC-CA--CTT-T-TC--TTTTCTT------TTTG--CA----TTGG-------A-G-----AG-G-TAG-----------TTGG-TTTGTATG---T--TCTCCAGAGT--C--CTG---TTTG-GA------TT-CGG---TTGG-CCAATTAA-T-GTTTTCAG-GA----TT--CTA-CGTA
gi|5 : cttacttgacttCT----TC-TCCAGGTG-TTTACGT-AGCG-TCG-TCCA-GTTTTCT-ATTCCTCTGTG--GA-CTCTCTCCAATTGTTAGTTTG-CATATGTC-TG---T-TA-TATTCTCCT-GGTATTCCT-TT-TCT-C-ACTGGA-TGCGCCCC-TAGTCCCAG-GTCTCAGGC-T-TATT--TTTTCGT-TATAATTTAATCAGTTCTCGG-------GGGAAGATAG-G-TAGATTAGAGAAATTTGA-TCTG--TG---TCGTCTCAAGAGTTCCCATTGATATTTGTGATTATCGTT-TGGTCTTTGGCCCCAT-AA-T----TTCAGTGAAGTTTT--CTA-CGTgg
gi|6 : agtcCGTGCCGC-A-CCATGGA---------------CTACTCAGCGGAAGTC-CTGCTGCATTTCC-AGCTCGTTCTG-TCGA--GAG--CTGAGATC-TCCA-CTG-TTT-CGT-AG-G-TCGTTCCACATTTCCT-TTTCCCCTGTG-----TTCC-----ATT-GTAG--TG-C--ATGCCTGGATTC-TA-TATT-TCCTCGG-AT--CCTTT-CCT-C-AGTTGG-TG---CCCTTATTTCCAGAGTC-CA--C-T-T-TA--T------------CTTG--CA-----TGG-------AGG-----AGCG-TAA-----------TTGcgagcaagttgttgatgaatgaatcctaggatatgg
gi|7 : aTGCCTGTTTTACT--TTTAGCAGAGAGTA----T--A-GGCCCCACC----GACAATCTGT-C-CCATCTCACT--CTGTTCTGAGCG-GCCGC---CC-TGGA---------------CTGC-CAGTTATA-TC-CTGCCGC--TTTC-ATCTC-T--TGTTCGA--GAGATCT----TCTTCCAGGTG-TTT-CTT-AG-G-TCG-TCCACGTTTTCTGATTACCCTGT---GA-TTCC-----ATT-
gi|8 : acttaacttgacttaA-TATT-TCCT-GG-AT--C--TT-CCTAC-AGTTGAATG---CCC-TA--TCCAG-GTC-CA--C-T-T-TCCCTTTTCTT-T---AATTG--CA----TTGG-------AGG-----AG-G-TAA-----------TTGGTTTTGT-TG---T--TCTCCAGA-TTCC--TTG---TTTGTGA------TTCCGG--TTGGC-CCAATAAA-T-G--TTTAG-GA----TT--CTA-agt
gi|9 : TGTTT-ACTCATTTAGCAGAG--TAATACT--G-GCCC--ATCCTCGAACACTCTGTCCTCCATCTCTCTCCCTGTTA-GAGCGTGCGCC-ACCCATGAACGTTGTTTCATCAGCCTAC-CGTCTGTA-TC-ATGCAGC--TTTT-ATCTCGT--TG-TCG---GAGAac
blockSeqs : T CA AG ATACTG CC CTCG CCT A CC C AA A CGTTGTTTCATCAGC T G G A AT A TC T T AG GAGA T . A G C C . T C A G CCGA CTCCA G TT . AT T T ATTCT . C C T TC T G A G G CGC T GT A T GG T G TCCC T TATA AT GTTC AGGACTC AAGAT C T ATTAGAGAAAT T TA TGT CG G CA ATA TTATCG C TC C T GTT T AGTT . G
blockSeqs : . C . TTAG . . AT A G C AC A . . . . C . . . . C . . . . . G . . . . C T . GAT . . . . . G T TGT . . . . . . . . . A . . TT . T . . . ATT T T A . . . . . . . T . . G . . T . . . . G . . . .
blockSeqs : . C . TA . . CT T . C A A . . . . C . . . . C . . . . . T . . . . C T . GG . . . . . T C TT . . . . . . . . . . . . . . . . . . TC T T . . . . . . . . T . . G . . . . . . . G . . . .
blockSeqs : . . . TA . . CT . . A A A . . . . T . . . . C . . . . . . . . . . C T . GA . . . . . T C TT . . . . . . . . . . . . . . . . . . TC T T . . . . . . . . G . . G . . . . . . . G . . . .
blockSeqs : . . . TA . . C . . . A . . . . . C . . . . C . . . . . . . . . . . T . GA . . . . . C T T . . . . . . . . . . . . . . . . . . TC T T . . . . . . . . T . . A . . . . . . . G . . . .
blockSeqs : . . . . . . A . . . . . . . . . . . . . . . . . . A . . . . . . . T . . . . . . . . . . . . . . . . . . TC T T . . . . . . . . T . . G . . . . . . . G . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . TA G T . . . . . . . . T . . G . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . C T T . . . . . . . . T . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . .
blockSeqCons : TA******* CT* GA*** ** T**** T* G*** **
originalCons : TGCCTGTTT-ACTC-TTTAGCAGAG--TA----T--A-GGCC--ACC----GACAATCTGT-CTCCATCTCACT--CTGTTCTGAGCGTGCCGC-A-CCATGGA---------------CTGC-CAGTTGTA-TC-CTGCCGC--TTTC-ATCTCGT--TG-TCGA--GAGATCT----TC-TCCAGGTG-TTT-C-T-AG-G-TCG-TCCACGTTTTCT-ATTCCCCTGTG--GA-TTCC-----ATT-TTAG--TG-C--ATGTCTTG---T-TA-TATT-TCCT-GG-AT--CC-TT-CCT-C-AGTTGG-TG---CCC-TA--TCCAG-GTC-CA--C-T-T-TC--TTTTCTT-T---ATTTG--CA----TTGG-------AGG-----AG-G-TAG-----------TTGG-TTTGT-TG---T--TCTCCAGAGTTCC--TTG---TTTGTGA------TT-CGG--TTTGG-CCAATAAA-T-G--TTCAG-GA----TT--CTA-CGTA
finalCons : TGCCTGTTT-ACTC-TTTAGCAGAG--TATA-------GGCC--ACC----GACAATCTGTCT-CCATCTCACT--CTGTTCTGAGCGTGCCGC-A-CCATGGA---------------CTGC-CAGTTGTA-TC-CTGCCGC--TTTC-ATCTCGT--TG-TCGA--GAGATCT----TC-TCCAGGTG-TTT-C-T-AG-G-TCG-TCCACGTTTTCT-ATTCCCCTGTGGA---TTCC-----ATT-TTAG--TG-C--ATGTCTTG---T-TA-TATT-TCCT-GG-AT--CC-TT-CCT-C-AGTTGG-TG---CCC-TA--TCCAG-GTC-CA--C-T-T-TC--TTTTCTTT----ATTTG--CA----TTGG-------AGG-----AG-G-TAG-----------TTGG-TTTGT-TG---T--TCTCCAGAGTTCC--TTG---TTTGTGA------TT-CGG--TTTGG-CCAATAAA-TG---TTCAG-GA----TT--CTA-CGTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCTGTTGATGAACTTGCACTGGATGCGTTCTGTTGCTCTGTGTCGTCATGTTTCTGATCCGATTAAGAACAGCCTTTGTTTGAGTGAAGTCTTTGGTTCTTGGTGTTTCTGCTGATTTTCGCTTCC
Unaligned ( gi|15 ): ATGTTGATTGAATGACTGGACTGGCGTTGTTTGTTTGCTGCTGTTGTTCGCATGTTTTGATCGTATATAGAGAAAGTTTACGTTTGAGTTGAAG
Alignments
lowQualScore : 11 111111111 1111 111 1 11 1 333333333333333 1111 1 11111 11111 111111 11111 1111111 11111111111 111111 1111
lowQualScore : 6 33 99 777777777 99 4444 222 1 55 0 0 999 5 555555555555555 5 5 5 3 77 5 77 5 1 77 2222 5 5 5 7 5 5 5 5 4 1 0 5 77777 22222 5 77 5 77 3 2 333333 3 3 3 6 77 3 3 3 3 6 555 3 99 3 6 44 3 3 00000 3 66666 77 7777 0000000 88888 3 3 77777777777 4 77 777 55 3 66 777 777777 4 66 4 4 1111 4 9999 66 5
lowQualScore : . .. .. ......... .. .... ... . .. . . ... . ............... . . . . .. . .. . . .. .... . . . . . . . . . . . . ..... ..... . .. . .. . . ...... . . . . .. . . . . . ... . .. . . .. . . ..... . ..... .. .... ....... ..... . . ........... . .. ... .. . .. ... ...... . .. . . .... . .... .. .
lowQualScore : 7 33 22 000000000 22 2222 333 7 88 8 7 444 0 777777777777777 7 7 7 0 99 7 99 7 7 99 1111 7 7 7 1 7 7 7 7 3 9 1 7 11111 55555 0 99 7 99 6 3 999999 6 6 6 7 99 3 3 3 3 7 888 3 22 3 7 66 3 3 88888 2 22222 99 1111 8888888 33333 3 6 33333333333 0 22 000 55 2 11 888 222222 4 11 4 4 7777 4 4444 11 0
consensus : TGCCTGTTT-ACTC-TTTAGCAGAG--TA----T--A-GGCC--ACC----GACAATCTGT-CTCCATCTCACT--CTGTTCTGAGCGTGCCGC-A-CCATGGA---------------CTGC-CAGTTGTA-TC-CTGCCGC--TTTC-ATCTCGT--TG-TCGA--GAGATCT----TC-TCCAGGTG-TTT-C-T-AG-G-TCG-TCCACGTTTTCT-ATTCCCCTGTG--GA-TTCC-----ATT-TTAG--TG-C--ATGTCTTG---T-TA-TATT-TCCT-GG-AT--CC-TT-CCT-C-AGTTGG-TG---CCC-TA--TCCAG-GTC-CA--C-T-T-TC--TTTTCTT-T---ATTTG--CA----TTGG-------AGG-----AG-G-TAG-----------TTGG-TTTGT-TG---T--TCTCCAGAGTTCC--TTG---TTTGTGA------TT-CGG--TTTGG-CCAATAAA-T-G--TTCAG-GA----TT--CTA-CGTA
Reference ( family-8319 ) : TGCCTGTTT-ACTC-TTTAGCAGAG--TA----T--A-GGCC--ACC----GACAATCTGT-CTCCATCTCACT--CTGTTCTGAGCGTGCCGC-A-CCATGGA---------------CTGC-CAGTTGTA-TC-CTGCCGC--TTTC-ATCTCGT--TG-TCGA--GAGATCT----TC-TCCAGGTG-TTT-C-T-AG-G-TCG-TCCACGTTTTCT-ATTCCCCTGTG--GA-TTCC-----ATT-TTAG--TG-C--ATGTCTTG---T-TA-TATT-TCCT-GG-AT--CC-TT-CCT-C-AGTTGG-TG---CCC-TA--TCCAG-GTC-CA--C-T-T-TC--TTTTCTT-T---ATTTG--CA----TTGG-------AGG-----AG-G-TAG-----------TTGG-TTTGT-TG---T--TCTCCAGAGTTCC--TTG---TTTGTGA------TT-CGG--TTTGG-CCAATAAA-T-G--TTCAG-GA----TT--CTA-CGTA
gi|1 : TT-ACTC-TTTAGCAGAG--TA----T--AAGGCC--ACC----GACAATCGAT-A--CATCTCACT--CTGGT-TGAGCGTGCCGC-A-CCATGGA---------------CTGT-TAGTTGTA-TC-CTGCAGC--TTTC-ATCTCGT--TG-TTGA--GAGATCT----T--TCCAGGTGTTTT-C-T-AG-GTTCG-TCCACGATTTCT-ATTCCCCTGTGCCGA-TTCC-----ATT-TTAG--TGCC--ATGTCTTG---T-TATTATT-T-CT-GGCATC-CC-TT-CCT-C-GGTTTG--G---CCC-TA--TCCAG-GTC-CA--C-T-T-TC--TTTTCTTAT---ATTTG--CA----TTGG-------AGG-----AG-G-TAA-----------TTAC-TTTG--TG---T--TCTCCAGAA-TCC--TTG---TTTGTGA------TT-CGG--GTAGC-CCAATATA-TGG--TTTAG-GA----TTTCTTA-CGT
gi|10 : g-TATT-TCCT-GG-AT--CC-TT-TCT-C-AGTTGG-TG---CCC-TA--TCCAG-GTC-CA--C-T-T-----TTTTC-T-T---ATTTG--CA----ATGG-------AGG-----AG-GTTAG-----------TTGG--TTGT-TGTGTT--TCTTCAGAGTTCC--TTG---TTTGTGAT-----TT-CGG--TTTGG-CCAATAAC-T-G--TTCAG-GA----TT--CTA-taggcacctgtatgaactgatctggattggcgattgtctgtttgctgctgttgttcgccattgtttctgaacgtataagagatagccttacgtttgagtttgaagatcttgcatttttggtgttctgctgatttctctggctttc
gi|11 : -TATT-TCCT-GG-AT--CC-TTGTCT-C-AGTTGG-TG---CC--TA--TCCAG-GTC-AA--C-T-T--C--TTTTCTT-T---ATTTG--CA----ATGG-------AGG-----AG-G-TAG-----------TTGG-TTTGT-TG---T--TCTTCAGAGTTCC--TTG---TTTGTGA------TT-CGG--TTTGG-CCAATAAC-T-G--TTCAG-GA----TT--CTA-
gi|12 : -TATT-TCCT-G--AT--CT-TT-CTT-AGAGTTGGGTG---CC--TA--TC--G-GTC-CA--C-T-T-TC--TTTT-TT-T---ATTTG--CA----TTGG-------AGG-----AG---TAG-----------TTGG-TTTTG-TG---T--TCTC--GAGTTCC--TTG---TTTATGA------TT-CGG--TTTGG-CCAATAAATT-G--TTCAG-GT----TT--
gi|14 : --GG-TTCC-----ATT-GTAG--TG-C--ATG-CTTG---T------TT-TCCT-GG-AT--CC--T-CCT-C-AGTTGG-T----CGC-TA--T-CAG-G---------------------CTT-T---ATTTG--CT----TTGGAGGACTCAGG-----AG-G-TTA-----------TTGG-CTTGT-TG---T--TCTCCAGAGTTCagt
gi|16 : tt-AT--CC-TT-TCT-C-AGTTGG-TG---CCC-TA--TCCAG-G----------------------TT-T---ATTTG--CA----TTGG-------AGG-----AG-
gi|2 : TGCCTGTTT-ACTC-TTTAGCAGAG--TA----T--A-GGCC--ACC----GACAATCTGT-ATACATCTCACT--CTGGTCTGAGCGTGCCGC-A-CCATGGA---------------CTGT-TAGTTGTA-TC-CTGCAGC--TTTC-ATCTCGT--TG-TTGA--GAGATCT----TC-TCCAGGTG-TTT-C-T-AG-G-TCG-TCCACGATTTCT-ATTCCCCTGTGCCGA-TTCC-----ATT-TTAG--TG-C--ATGTCTTG---T-TA-TATT-TTCT-GG-AT--CC-TT-CCT-C-AGTTGG-TG---CCC-TA--TCCAG-GTC-CA--C-T-T-TC--TTTTCTT-T---ATTTG--CA----TTGG-------AGG-----AG-G-TAA-----------TTAC-TTTGT-TG---T--TCTCCAGAATTCC--TTG---TTTGTGA------TT-CGG--TGTAG-CCAATATA-T-G--TTTAG-GA----TT--CTA-CGTA
gi|3 : GTTT-ACT---TTAGCAGAG--TA----T--A-GGCC--ACC----GACCGACTGT-CTCCATCTC-CTG-CTGTTCTGAGCGTG-CGCAA-CCATGAA----------------TGC-CAGTGGTA-TC-CT--CGC--TTTCAATCTCGT--TG-TCGA--GA-AT-T----TC-TACAGGTG-TTT-T-TCAG-G-TC--TCCG---TTTCT-ATTCCCCTGTG--GATTTCC-----ATT-TTAG--GG-C--ATGGTCTG---TGTA-TATG-TCAT-GG-A----C-TT-ATT-C-AGTT-G-TG---CGC-TA--TCCAG-GTCTCA--C-TGT-TC--TTGTC-T-T---ATTTGA-CA----TTGA-------AGG-----AG-G-TAG-----------CTGG-GTTGT-TG---T--TCTCCAGG--TCC--TTG---TTTGTGA-------T-CGG--TTTGG-CCAATAAG-T----TTCAC-GA-----T--CTAGCGT
gi|4 : cttattgaacttatgaacTGCCTGTT--ACTC-GT-AGCAGAG--TA----TTAG-GGCC--AC------ACAATCTGT-CTCCATCTC-CT--CTGTT-TGAGCGTGC-GC-A-CC---GA---------------CTGC-CAGTTGTA-TCGCTGCCGC--TTTC-ATCTCGT---G-T-GAAGGAGATCT----TC-TCCAGGT--TTT-C-T-AG-G-TCG-TCCACGTTT-CT-ATTCCC-TGTG---A-TTCC-----ATT-TTAG--TG-C--ATGTCCTG---T--A-TATT-TCCT-GG-AT--CC-TT-TCT-C-AGGTGG-TT---GCC-TA--TCCAG-GTC-CA--CTT-T-TC--TTTTCTT------TTTG--CA----TTGG-------A-G-----AG-G-TAG-----------TTGG-TTTGTATG---T--TCTCCAGAGT--C--CTG---TTTG-GA------TT-CGG---TTGG-CCAATTAA-T-GTTTTCAG-GA----TT--CTA-CGTA
gi|5 : cttacttgacttCT----TC-TCCAGGTG-TTTACGT-AGCG-TCG-TCCA-GTTTTCT-ATTCCTCTGTG--GA-CTCTCTCCAATTGTTAGTTTG-CATATGTC-TG---T-TA-TATTCTCCT-GGTATTCCT-TT-TCT-C-ACTGGA-TGCGCCCC-TAGTCCCAG-GTCTCAGGC-T-TATT--TTTTCGT-TATAATTTAATCAGTTCTCGG-------GGGAAGATAG-G-TAGATTAGAGAAATTTGA-TCTG--TG---TCGTCTCAAGAGTTCCCATTGATATTTGTGATTATCGTT-TGGTCTTTGGCCCCAT-AA-T----TTCAGTGAAGTTTT--CTA-CGTgg
gi|6 : agtcCGTGCCGC-A-CCATGGA---------------CTACTCAGCGGAAGTC-CTGCTGCATTTCC-AGCTCGTTCTG-TCGA--GAG--CTGAGATC-TCCA-CTG-TTT-CGT-AG-G-TCGTTCCACATTTCCT-TTTCCCCTGTG-----TTCC-----ATT-GTAG--TG-C--ATGCCTGGATTC-TA-TATT-TCCTCGG-AT--CCTTT-CCT-C-AGTTGG-TG---CCCTTATTTCCAGAGTC-CA--C-T-T-TA--T------------CTTG--CA-----TGG-------AGG-----AGCG-TAA-----------TTGcgagcaagttgttgatgaatgaatcctaggatatgg
gi|7 : aTGCCTGTTTTACT--TTTAGCAGAGAGTA----T--A-GGCCCCACC----GACAATCTGT-C-CCATCTCACT--CTGTTCTGAGCG-GCCGC---CC-TGGA---------------CTGC-CAGTTATA-TC-CTGCCGC--TTTC-ATCTC-T--TGTTCGA--GAGATCT----TCTTCCAGGTG-TTT-CTT-AG-G-TCG-TCCACGTTTTCTGATTACCCTGT---GA-TTCC-----ATT-
gi|8 : acttaacttgacttaA-TATT-TCCT-GG-AT--C--TT-CCTAC-AGTTGAATG---CCC-TA--TCCAG-GTC-CA--C-T-T-TCCCTTTTCTT-T---AATTG--CA----TTGG-------AGG-----AG-G-TAA-----------TTGGTTTTGT-TG---T--TCTCCAGA-TTCC--TTG---TTTGTGA------TTCCGG--TTGGC-CCAATAAA-T-G--TTTAG-GA----TT--CTA-agt
gi|9 : TGTTT-ACTCATTTAGCAGAG--TAATACT--G-GCCC--ATCCTCGAACACTCTGTCCTCCATCTCTCTCCCTGTTA-GAGCGTGCGCC-ACCCATGAACGTTGTTTCATCAGCCTAC-CGTCTGTA-TC-ATGCAGC--TTTT-ATCTCGT--TG-TCG---GAGAac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCTGTTGATGAACTTGCACTGGATGCGTTCTGTTGCTCTGTGTCGTCATGTTTCTGATCCGATTAAGAACAGCCTTTGTTTGAGTGAAGTCTTTGGTTCTTGGTGTTTCTGCTGATTTTCGCTTCC
Unaligned ( gi|15 ): ATGTTGATTGAATGACTGGACTGGCGTTGTTTGTTTGCTGCTGTTGTTCGCATGTTTTGATCGTATATAGAGAAAGTTTACGTTTGAGTTGAAG