lowQualScore : 444444444444 11 1 111 11111 1 3333333 111 111 77777777777777777777777777777 11 11111 1 111 1111 2222222222 2 111111 11 111 111111 22222 222222 1 111111 55 1 1 1 1 11 11 111 111 111 1 111 11 33333333333 11 33333 111111111 1 1 2 22222 22
lowQualScore : 77 9 77 8 4 333333333333 0 33 66 1 0 5 66 5 66 0 5 777 66666 3 6 9999999 000 111 6 6 99 6 99 6 66666666666666666666666666666 22 6 3 8 33 44444 7 77 000 2222 5555555555 5 0 5 5 77 222222 00 5 000 999999 6 55555 888888 5 555555 3 55 2 3 3 6 5 6 3 3 3 3 1 9 33 8 0 8 0 0 11 444 0 2 000 444 6 8 0 8 444 3 00 8 6 8 0 6 88888888888 5 6 2 4 66 77777 8 5 5 777 2 5 777777777 5 4 8 8 4 0 8 3 3 3 6 77777 33
lowQualScore : .. . .. . . ............ . .. .. . . . .. . .. . . ... ..... . . ....... ... ... . . .. . .. . ............................. .. . . . .. ..... . .. ... .... .......... . . . . .. ...... .. . ... ...... . ..... ...... . ...... . .. . . . . . . . . . . . . .. . . . . . .. ... . . ... ... . . . . ... . .. . . . . . ........... . . . . .. ..... . . . ... . . ......... . . . . . . . . . . . ..... ..
lowQualScore : 99 1 99 9 4 111111111111 5 88 99 9 4 0 99 0 99 2 0 555 77777 3 7 4444444 000 222 7 7 22 7 22 7 33333333333333333333333333333 88 7 2 0 66 33333 0 99 000 1111 0000000000 7 3 7 7 99 333333 77 7 000 222222 7 00000 888888 0 222222 2 00 0 2 2 0 0 7 3 3 2 2 0 0 88 0 8 0 6 8 00 000 8 2 000 000 4 0 8 0 000 2 44 0 6 0 8 6 00000000000 0 0 8 0 22 00000 0 0 0 444 0 7 444444444 7 6 0 0 4 2 8 2 3 3 7 55555 00
consensus : AACACAAGG--TCANGGTCAT--ACAGAAATAGTT-T-CTAT------------ATATTGATAA--TG--AATGTATG-ACT--GACAAA-A--AAGTTTAGGTATGGATA-TAGAAAT--ATAC-----TACAT-AA-GAAAC-----GAAA---AAAAAAT-T-AA-CAA-GTC--G-GTTCT--GTACT-TGATAC---------AT----------------ATACTAGTG-TGAAAGATTTNAAAA--AA-----TTAAACAAATCTATTTGT--AGACAAAATA---TAT----TCAT----------GTACAATTC-TGAAAA-TTG-CAA--CATTTTG----T-TTA-TAACTA-AGATTA---TTG------T-CACC-----ATACAA------AATAAGTTCTAAAGATAAAGGTA--ATTGTAATTGTAGATTGTTAAAACTTTTTATCAGTATTTGTCTTTGTGTA-CAATATTTTGGACACTTCAGAAAAAAGTGAAGTGTGGTTTCAAGACTATTCT-GACAAAACTCACGATCAGGATTTTCTCTAAGAAAGTGCTTAAATAAA-TCAGCA-TTAAGATTA--CTA---GCTTTATTTCGCAATTGACAGTGC-A-AT---ATATTTGC-TTTTCGATTG-CC---ATANTTAAAATA-ANTTTTA-GGTTTAA-----------TGGAATATATATTTTTNATGGC-ACGCTTTCAA-GAAAGATA-CTA-GT-G-TAGGAAGACTTC-GAATAT--TCAA-G-GGTAG-GTCATTCCATAATT-TTA-TNGTCGAAGGTATAAAGC-TATT-CATATATNCATGAAGTTTTAA
Reference ( gi|2 ) : AACACAAGG--TCATGGTCAT--ACAGAAATAGTT-T-CTAT------------ATATTGATAA--TG--AATGTATG-ACT--GACAAA-A--AAGTTTAGGTATGGACA-TAGAAAA--ATAC-----TACAT-AA-GAAA------GAAA---AAAAAAT-T-AA-CAA-GTT--G-GTTCT--GTACT-TGATTC---------AT----------------ATACTAGTG-TGAAAGATTTTAAAA--AA-----TTAAACAAATCTATTAGT--AGACAAAATA---TAT----TCAT----------GTACAATTC-TGAATA-TTG-CAA--CATTTTG----T-TTA-CAACTA-AGATTA---TTG------T-CACC-----ATACAA------AATAATTTCTAAAGATAAAGGTACTATTGTAGTTGTAGATTTTTAAAACTTTGTATCAGTATTTGTCTTTGTGTA-CAATATTTTGGACACTTCAGAAAAAAGTGAAGTGTGGTTTCAAGACTATTCT-GACAAAACTCACAATCAGGATTTTCTCTAAGAAAGTCCTTAAATAAA-TCAGCA-TTAAGATTA--CTA---GCTTTATTTCGCAATTGACAATGC-A-AT---ATATTAGC-TTTTCGATTG-CC---ATAGTTAGAATA-AATTTTA-GGTTTTA-----------TGGAATATATACTTTTAATGGC-ACGCTT-----GAAAGATA-CTA-GT-G-TAGGAAGACTTC-GAATAT--TCAA-G-GGTAG-GTCATTCCACAATT-TTA-TAGTCGAAGGGATAAAGC-TATT-CA-ATATGTAT-AAGTACTAAT
gi|9 : AACACAAGG--TCA-GGTCAT--ACAGAAATAGTTCT-CTAT------------ATATTGATAA--TG--AATGTA-G-ACT--GACAAA-A--GGTCTTAGGTATGAATA-TAGAAGACTATAC-----TACATTAA-GAAACAAAA-GAAA---AAAAAAT-T-AA-CTA-GTC--GCGTTCT--GTACT-TGATTC---------ATGT--------------ATACTAGTG-TGAAAGGTTTAAAAA--AA-----TTAAACAAATCTATTTGT--A-ACAAAATA---TAT----TC-T----------GTACAATTC-TGAA-A-ATG-CGA--CATTTTG----T-TTA-TAACTA-AGATTA---TT
gi|18 : aAACACAAGG--TCAAGGTCAT--ACAGAAATAGTT-T-CTAT------------ATATTGATAA--TG--AATGTATG-ACT--GAC-AA-A--AAGTTTAGATATGGATA-TAGAAGT--ATAC-----TACAT-AA-GAAA------CAAA---AGAAAA
gi|23 : aAACACAAGG--TCATGGTCAT--ACAGAAATAGTT-T-CTAT------------ATATTGATAA--TG--AAa
gi|17 : AACACAAGGGGTCATGGGCATGAACAGAACTAGTT-TTCTAT------------ATATTGATAA------GATGT-TG-AC----GCAAACAACAAGTTTAGGTATGAATACTAAGACA--ATATATCAGTACATCAATGAAA------AAAA---GAAAAA
gi|25 : aAACATATGA--TCAAGGTCAT--ACAGAAATAGTT-T-C
gi|1 : taCAAGG--TCATGGTCAT--ACAGAAATAGTTGC-CTATTAAAAACACCAGAGATTGAAAA--TGGAAATGTATGAACTTCGACAAC-A--AAGTTCAGGTATGAA-A-TA
gi|20 : aagcCAAGG--TCAAGATCAT--ACAGAAA--GTT-T-CTAT------------ATTTTGATAA--TG--AATGTATG-ACT--GACAAA-A--AAGTTTAGGTATGGATA-TAGAAAtggaggcgcgactgtagaatttataggccctgatagagcgatagagtagctataaaagtatttagtaaaaaaaattaaacaaagtctgggttcctggtactgtgattcaggataggaatggtgggggctgggggaatatcagtggtgaaagagtttaaaaaaaattattaaacaaatctatttgtgtagacaagagagtttattcatcgttgaatgggtacaattctgaaaaattggcaaaacattttggtattattatcacctacagattagggttggaggagtacaccgctagatattatcatccaataagttctagaataaggtaattgtagtgtagattattaaaacttttatcatatttgtctttgtgtaacaatactttggaccattcagaaaaaagtgaagtgtggtttcaagactattctggacaaaactcacaatcaggatttctctagaaaaggtcttaaataaatcagcattaagatactagcttttttcgcaattgacatggcaaatatattagtcttcgattgtccatagttaatatacttttaggtttattgaatttatactttttatggcaacgcttgaaagatacctacgtggtaggaagcttgaatattcaaggggtaggtcacatcacaattttatagtcgaagggataagctattcatataggagttgttttcactaagggaattttaattttagagtatcctgttttttaaagataagaagttatgaggcaaagtacatggccagaagtacagtcctcaaataatggggacttatccctgaactattttgtagaacatcacaatttatgaatttttctttcttattgctaggtatcccatccaatgttcattaataaaaggtccgatcttgatggattttacccttaacctgaaaatttatcgtctgctgttatttgaaacatcttcagttaaattagcaatctctttctgtacaagttatccaaactttgaatattcaaatatggtcgacataagaaaagataaatttatcaatgaatcccttttaagttgataactttaacatcttagccc
gi|12 : T-T-CTATGGT---------AAATTTATAGCTTG--A-TGTATG-ACT--GGCAAA-A--AAGTTTAGGTATGGATA-TAGAAAT--ATAC-----TACAT-AG-GAAAC-----GAAAGGAAAAAAAT-TCAA-CAA-GTT--G-GTTCT--GTACT-TGATAC---------AT----------------ATACTAGTG-TGAAAGA-TTAAAAA--AA-----TTAAACAAATCTATTTGT--AGACAAAATA---TAT----TCAT----------GTACACTTCTTGAAAA-TTG-CAA--CATTTTG----T-TTA-TAACTA-AGATTA---TTG------T-CACt
gi|11 : cagtttccagT-T-CTATGGT---------AAATTTATAGCTTG--A-TGTATG-ACT--GGCAAA-A--AAGTTTAGGTATGGATA-TAGAAAT--ATAC-----TACAT-AG-GAAACGAAAGGAAA---AAAATAT-C-AA-CAA-GTT--G-GTTCT--GTACT-TGATAC---------AT----------------ATACTAGTG-TGAAAGATTAAAAAAA-AA-----TTAAACAAATCTATTTGT--AGACAAAATA---TAT----TCAT----------GTACACTTC-TGAAAA-TTG-CAA--CATTTTG----T-TTA-TAACTA-AGATTA---TTG------T-CA
gi|6 : cagtttccagATGTAAG-ACT--GACAAA-A--AAGTTTAGGTATGGATA-TAGATAT--ATAC-----TACAC-AA-GGGA---------------AAAGT-A-AA-CAA-GTT--G-GTTCT--GTACT-TGGT-----------------------------AAA--AGAA-TGAAAGATTTTATGA--AA-----TTAGATCAATCTATTTGT--AGACAAAATA---TAT----TCAT----------GCACAATTA-TGAAAA-TTG-CAA--CCTTTTG----G-TTA-TAACTG-AGATTA---TTT------T-CACC-----ATACAA------AATAAGTT------ATAAAGGTA--ATTGTAATTGTCGATTGTTCAAACTTTTTATCAGTATTTGTCTTTGTGTA-CAATATTTTGGACACTTAAGAAAGACGTGAAGTGTGGTTT
gi|1 : gA------GTAA---AAAAAAT-T-AAACAAAGTCTGG-GTTCCTGGTACTGTGATTCAGGATAGGAATGGTGGGGGCTGGGGGAATATCAGTGGTGAAAGAGTTTAAAA--AAAATTATTAAACAAATCTATTTGTGTAGACAAGAGAGTTTAT----TCATCGTTGAATGGGTACAATTC-TGAAAAATTGGCAAAACATTTTGGTATTATTATCACCTACAGATTAGGGTTGGAGGAGTACACCGCTAGATATTATCATCCAATAAGTTCTAGA-ATAA-GGTA--ATTGTAGT-GTAGATTATTAAAACTTT-TATCA-TATTTGTCTTTGTGTAACAATACTTTGGACCATTCAGAAAAAAGTGAAGTGTGGTTTCAAGACTATTCTGGACAAAACTCACAATCAGGA-TTTCTCTAGAAAAGGTCTTAAATAAA-TCAGCA-TTAAGA-TA--CTA---GCTTT-TTTCGCAATTGACATGGCAA-AT---ATATTAG--TCTTCGATTGTCC---ATAGTT--AATATACTTTTA-GG-TTTA-----------TTGAATTTATACTTTTTATGGCAACGCTT-----GAAAGATACCTACGTGG-TAGGAAG-CTT--GAATAT--TCAAGG-GGTAG-GTCACATCACAATT-TTA-TAGTCGAAGGGAT-AAGC-TATT-CATATA
gi|7 : aagccaaggtcatggtcatacagaaatagttgcctattaaaaacaccagagattgaaaatggaaatgtatgaacttcgacaacaaagttcaggtatgaaatatggaggcgcgactgtagaatttataggccctgatagagcgatagagtagctataaaagtatttAAAAATGT-AA-CAA-GTT--G-GTTCT--GTACT-TGATAC---------AT----------------GTACAAGTG-TGAAAAATTTGAAAACAAA-----TTAAACAAATCTATTTGT--AGACAAAATA---TAT----TCAT----------GTACAATTC-TGAAAA-TTG-CAA--CATTTTG----T-TTA-TAACTA-AGATTA---TTG------T-CACC-----ATACAA------AATAAGTTCTAAAGATAAAGGTA--ATTGTAATTGTAGATTGTTAAAACTTTGTATCAGTATTTGTCTTTGTGTA-CAATATTTTGGACACTTCAGAAAAAAGTGACGTGTGggagttgttttcactaagggaattttaattttagagtatcctgttttttaaagataagaagttatgaggcaaagtacatggccagaagtacagtcctcaaataatggggacttatccctgaactattttgtagaacatcacaatttatgaatttttctttcttattgctaggtatcccatccaatgttcattaataaaaggtccgatcttgatggattttacccttaacctgaaaatttatcgtctgctgttatttgaaacatcttcagttaaattagcaatctctttctgtacaagttatccaaactttgaatattcaaatatggtcgacataagaaaagataaatttatcaatgaatcccttttaagttgataactttaacatcttagccc
gi|14 : ccccctctttttcaaaggggggtat--AA-----TCTAACGAGTTTACTTGT--AGACAAGATA---TATAAATTCAT----------GTACAATTC-TGAAAA-TTG-CAA--CATTTGG----T-T-----ATTT-TGGTTA---TTG------T-TATC-----ATTCAA------AATGAGTTC-AAAGATAAAGGTA--ATGGTAATTG-AAAATATAAAAACTTCTTGTC
gi|21 : actcgtacattacaaaggttggttatgcgtctgagaatgaagttGGTTTCAAGACTATTCT-GACAAAACTAACGATCAGGATTTTCTCTAAG--------------AA-TCAGCA-TTAAg
gi|4 : TTTCAAGACTATTAT-GACAAAACTCACAATTAGGATTTTCTCTCAGAAAGTGCTTAAATAAA-TCAGCA-TGAAGATTATACTG---GCTTTATTTCGCAATTGACAGTGC-A-AT---ATATTTGC-TTTTCGATTG-TC---ATATTTAAAACA-AGTTTTA-GGTTTAA-----------TGGAATATATATTTTTAATGGG-ACGCTTTCAAGAAAAGATA-CTA-GT-G-T-GAAAACCTTC-GAATATACTCCA-G-GGTAG-CTCATta
gi|5 : AGGATTT-CTCTTCAGAAGTGCTTAAATAAAATCAGCA-TGAAGATTA--TTACTTGCTTTATTTCGCAATTGACAGTGC-A-AT---ATATTTGCCTTTTCGATTG-TC---ATATTTAAAACA-AGTTTTA-GGTTTAA-----------TGGAATATATATTTTAAATGG--ACGCTTTCAA-GAAAGATA-CTA-GT-G---AGAAAACTTC-GAATATACTCAACGCGATAGCGTCATaataacgaagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaatggtcagtcaaaatataaaaaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttagtccttgcaaatatggggagctttttaaatcaacacaaagtttatgaattttccttcttattgctaaggtatccatccaagttcatataaagtgtcgatcgttgttatattcttaagacatttaatcgt
gi|10 : tTAAGTAAATGATTAAATAAA-TC-GCATTTAACATTA--CTA---GCAGCATTTCGCAATTGACAATGC-GCGT---ATATT-GC-ATTACGA-TG-CCAATATAATTATGATA-AATCGTATGGTTAAA-----------T-GAAT-----TTTTTCATTGT-ATGATT-----GAAGAATG-ATA-AT-GATAG--AGGCCTCTAAATGT--CCAA-A-GGTAG-GCCATTCAATGACC-TTA-TGGTTGGATATATAAAGCTTATTATA-GTATTCAT-AAATaatacgaagttgtagcgttatgttttatatttttgactgaccattaatctaatggctcagtcaaaatataaaaaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttagtccttgcaaatattggggagcttttgtaaatcaacacaagtttatgaattttccttcttattgctaaggtatcccatccaagttcattataaagtgtcgatcttgttatattcttaagacatttaatcgt
gi|16 : TTA--CTA---GCTTTATTTCGCAATTGACCATGC-A-ATTATATATTTGC-TATTCGTTTG-CC---ATAGTTAAGATT-ACTTTTA-TGTTTTAAATACTTTTAATGGAATATATATTTTTGATGAC-AGGCTT-----GAAAGATA-CTA-GT-G-TAGGAAGACTTgaagtcgttttctctaat
gi|3 : A-GA-G-TTGGGAGATCTC-TGATAT--GAAT-A-GGTAG-GTCATTCCATAGTTATTATTTGCTGAAGGTATAAAGC-TGTT-CATATATG-ATGAAGTTTTAA
gi|8 : tcttttgtacatattcaaaaatctttacattgtctttgaattttagattttttatgatgtaA-AT-G-TGGGGAGATTTC-TGATAT--GGAT-G-GACAG-GTCATTCCAGAGTT-TCA-TTGTCGAAAGTATAgttgaggaggaatacatttaagaccatcattgtttctaagtggatatgagttttgtggagggatgcaaggtatcaaattggggagctatgccataagctatcttgtaaaataagataagtttatgaacttttcttctagtggttaaagtatcccagcctaattcattatacagtgctgatctttaagaatttattttcattcccgtggttattctcgcagcagtacacctgaacattctctagtaaattggcttccctttctgtacaattgtcccacattgaatttgcatactcgagaattggacgaatgaaagaaaagtaatttttcattaaagattgaagttattgtattttaaaatgtgataactttcataagttagct
gi|22 : ta-GT-G-TAGGAAGACTTC-GAATAC--TCAA-G-GGTTG-GTCATTCCATAATT-TTA-TAGTCGtgatgaagtcctaccgcaaagaagaattaattcaagaccgtcatagtttcgtagtcgttgggaattctacggaggaatgcatatgatatcaaaaataaaaaccaaaaaaggcagtactttacttttggtaaacagaaagtttgtgaactttttttctatttgattagctaggctcccagaagaatccattctcattccagtgattactcttg
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): CTATTTTGTAAAATAAGATAAGTTTTTGAACTTTTCTTCTAGTGGCTAAAGTATTCCAGCCTAATTCATTATACAGTGCTGATCTAGAAGAAGTTATTCTCATTCCCGTGATTATTCTTGCAGCAGTAACCTGACCATTCTCTAGTAAATTGGCTTCCCTTTCTGTACAATTGTCCCACACTGAATTTGCATACTCGAGAATTGGACGAATAACAGAAAAA
Unaligned ( gi|15 ): ACTGGTCTTAAAGAAATTCCTCTAACATCTGTGATAATTCTTGCTGCAGAACCTTGAATGTTCTGTATCAGTTGGCTGGACTCTTTTCTGTACAATTTTCCCGTACTAAATTTTCATATTCCAGTAAAAGAAGAATAAGAGAAAAATAGGCTTTTATCAAAGCTT
Unaligned ( gi|19 ): CAATTGCAAGAAGAAATAGCCCCCTCTTATTCCAAAGGGGGGCATAAAAATCTAAAATCAAATAAATGGAATGATTATAATCTGTATGAGAGTTATGTACAAGT
Unaligned ( gi|24 ): CCCTCTTTTTCAAAGGGGGGCATAACAAAGAACAAG
Alignments
lowQualScore : 333333333333 11 111 1 2222222222222222 111 11 1111 1111 2222222222 1111 111111 22222 222222 11 1 1 111 11111 111 22222222222 11 3333 11 1 1 1 11 1
lowQualScore : 66 5 66 8 4 888888888888 22 66 0 4 66 4 66 4 66 4 66 000 1 5 4444444444444444 4 444 5 999 5 77 5 77 0 5 5 1 11 0000 66 888 0000 1111111111 5 5 5 66 0000 5 5 5 888 666666 5 00000 333333 5 5 0 11 0 0 1 11 2 0 0 2 0 0 6 2 6 6 99 111 2 88888 6 6 000 1 77 1 5 77777777777 5 5 4 5 5 1 22 5 2222 5 5 4 4 6 1 33 0 5 5 6 77 0 0 0 2 3 0 33 2 4
lowQualScore : .. . .. . . ............ .. .. . . .. . .. . .. . .. ... . . ................ . ... . ... . .. . .. . . . . .. .... .. ... .... .......... . . . .. .... . . . ... ...... . ..... ...... . . . .. . . . .. . . . . . . . . . . .. ... . ..... . . ... . .. . . ........... . . . . . . .. . .... . . . . . . .. . . . . .. . . . . . . .. . .
lowQualScore : 99 9 99 0 0 333333333333 22 11 8 4 11 4 11 4 11 4 99 000 4 7 8888888888888888 4 000 7 333 7 99 7 99 3 7 7 0 99 6666 99 888 6666 9999999999 0 0 0 99 6666 0 0 0 888 444444 7 00000 000000 6 0 8 00 8 8 4 44 5 0 0 0 8 8 0 5 7 7 22 777 2 55555 7 7 000 0 44 0 7 11111111111 7 1 3 4 7 0 33 0 7777 7 7 4 4 3 8 88 0 0 0 7 77 6 8 0 5 2 0 00 0 0
consensus : AACACAAGG--TCANGGTCAT--ACAGAAATAGTT-T-CTAT------------ATATTGATAA--TG--AATGTATGA-CT--GACAAA-A--AAGTTTAGGTATG-GATAT--AGA-AA--TATAC---TACAT-AA-GAAAC----GAA---A----AAAAA-AT-T-AAC-AAGTC--G-GTTCT--GTACT-TGATACAT--ATACTAGTG-TGAAAGA-TTTAAAAA--AA----TTAAACAAATCTATTTGT--AGACAAAATA---TAT----TCAT----------GTACAATTC-TGAAAA-TTG-CAA--CATTTTG----T-TTATAAC-TA-AGATTA---TTG------T-CACC-----ATACAA------AATAAGTTCTAAAGATAAAGGTA--ATTGTAATTGTAGATTGTTAAAACTTTTTATCAGTATTTGTCTTTGTGTA-CAATATTTTGGACACTTCAGAAAAAAGTGAAGTGTGGTTTCAAGACTATTCT-GACAAAACTCACAATCAGGATTTTCTCTAAGAAAGTGCTTAAATAAA-TCAGCA-TTAAGATTA--CTA---GCTTTATTTCGCAATTGACAATGC-A---ATATATTTGC-TTTTCGATTG-CC---ATANTTAAAATAANTTTTA-GG-----------TT-TAATGGAATAT-ATATTTTTNATGGC-ACGCTTT-AAG-AAAGATA-CTA-GT-GTAGGAAGACTTCGAATAT--TCAA-G-GGTAG-GTCATTCCATAATT-TTATN-GTCGAAGGTATAAAGC-TATTCATA-TATGCATGAAGTNCTAA
Reference ( family-824 ) : AACACAAGG--TCANGGTCAT--ACAGAAATAGTT-T-CTAT------------ATATTGATAA--TG--AATGTATGA-CT--GACAAA-A--AAGTTTAGGTATG-GATAT--AGA-AA--TATAC---TACAT-AA-GAAAC----GAA---A----AAAAA-AT-T-AAC-AAGTC--G-GTTCT--GTACT-TGATACAT--ATACTAGTG-TGAAAGA-TTTNAAAA--AA----TTAAACAAATCTATTTGT--AGACAAAATA---TAT----TCAT----------GTACAATTC-TGAAAA-TTG-CAA--CATTTTG----T-TTATAAC-TA-AGATTA---TTG------T-CACC-----ATACAA------AATAAGTTCTAAAGATAAAGGTA--ATTGTAATTGTAGATTGTTAAAACTTTTTATCAGTATTTGTCTTTGTGTA-CAATATTTTGGACACTTCAGAAAAAAGTGAAGTGTGGTTTCAAGACTATTCT-GACAAAACTCACGATCAGGATTTTCTCTAAGAAAGTGCTTAAATAAA-TCAGCA-TTAAGATTA--CTA---GCTTTATTTCGCAATTGACAGTGC-A---ATATATTTGC-TTTTCGATTG-CC---ATANTTAAAATAANTTTTA-GG-----------TT-TAATGGAATAT-ATATTTTTNATGGC-ACGCTTTCAAG-AAAGATA-CTA-GT-GTAGGAAGACTTCGAATAT--TCAA-G-GGTAG-GTCATTCCATAATT-TTATN-GTCGAAGGTATAAAGC-TATTCATA-TATNCATGAAGTTTTAA
gi|1 : CAAGG--TCATGGTCAT--ACAGAAATAGTTGC-CTATTAAAAACACCAGAGATTGAAAA--TGGAAATGTATGAACTTCGACAAC-A--AAGTTCAGGTATGAAATAT--GGA-
gi|1 : aagcA---A----AAAAA-AT-TAAACAAAGTCTGG-GTTCCTGGTACTGTGATggcgcgactgtagaatttataggccctgatagagcgatagagtagctataaaagtatttagtaaaaaaaattaaacaaagtctgggttcctggtactgtgattcaggataggaatggtgggggctgggggaatatcagtggtgaaagagtttaaaaaaaattattaaacaaatctatttgtgtagacaagagagtttattcatcgttgaatgggtacaattctgaaaaattggcaaaacattttggtattattatcacctacagattagggttggaggagtacaccgctagatattatcatccaataagttctagaataaggtaattgtagtgtagattattaaaacttttatcatatttgtctttgtgtaacaatactttggaccattcagaaaaaagtgaagtgtggtttcaagactattctggacaaaactcacaatcaggatttctctagaaaaggtcttaaataaatcagcattaagatactagcttttttcgcaattgacatggcaaatatattagtcttcgattgtccatagttaatatacttttaggtttattgaatttatactttttatggcaacgcttgaaagatacctacgtggtaggaagcttgaatattcaaggggtaggtcacatcacaattttatagtcgaagggataagctattcatataggagttgttttcactaagggaattttaattttagagtatcctgttttttaaagataagaagttatgaggcaaagtacatggccagaagtacagtcctcaaataatggggacttatccctgaactattttgtagaacatcacaatttatgaatttttctttcttattgctaggtatcccatccaatgttcattaataaaaggtccgatcttgatggattttacccttaacctgaaaatttatcgtctgctgttatttgaaacatcttcagttaaattagcaatctctttctgtacaagttatccaaactttgaatattcaaatatggtcgacataagaaaagataaatttatcaatgaatcccttttaagttgataactttaacatcttagccc
gi|1 : aagccaaggtcatggtcatacagaaatagttgcctattaaaaacaccagagattgaaaatggaaatgtatgaacttcgacaacaaagttcaggtatgaaatatggaggcgcgactgtagaatttataggccctgatagagcgatagagtagctataaaagtatttagt--ATATCAGTGGTGAAAGAGTTTAAAAA--AAATTATTAAACAAATCTATTTGTGTAGACAAGAGAGTTTAT----TCATCGTTGAATGGGTACAATTC-TGAAAAATTGGCAAAACATTTTGGTATTATTATCACCTACAGATTAGGGTTGGAGGAGTACACCGCTAGATATTATCATCCAATAAGTTCTAGA-ATAA-GGTA--ATTGTAGT-GTAGATTATTAAAACTTTT-ATCA-TATTTGTCTTTGTGTAACAATACTTTGGACCATTCAGAAAAAAGTGAAGTGTGGTTTCAAGACTATTCTGGACAAAACTCACAATCAGGA-TTTCTCTAGAAAAGGTCTTAAATAAA-TCAGCA-TTAAGA-TA--CTA---GCTTT-TTTCGCAATTGACATGGCAA---ATATATTAG--TCTTCGATTGTCC---ATAGTTAATAT-ACTTTTA-GG-----------TT-T-ATTGAATTT-ATACTTTTTATGGCAACGCTT----G-AAAGATACCTACGTGGTAGGAAG-CTT-GAATAT--TCAAGG-GGTAG-GTCACATCACAATT-TTATA-GTCGAAGGGAT-AAGC-TATTCATA-TAtcaggataggaatggtgggggctgggggaatatcagtggtgaaagagtttaaaaaaaattattaaacaaatctatttgtgtagacaagagagtttattcatcgttgaatgggtacaattctgaaaaattggcaaaacattttggtattattatcacctacagattagggttggaggagtacaccgctagatattatcatccaataagttctagaataaggtaattgtagtgtagattattaaaacttttatcatatttgtctttgtgtaacaatactttggaccattcagaaaaaagtgaagtgtggtttcaagactattctggacaaaactcacaatcaggatttctctagaaaaggtcttaaataaatcagcattaagatactagcttttttcgcaattgacatggcaaatatattagtcttcgattgtccatagttaatatacttttaggtttattgaatttatactttttatggcaacgcttgaaagatacctacgtggtaggaagcttgaatattcaaggggtaggtcacatcacaattttatagtcgaagggataagctattcatataggagttgttttcactaagggaattttaattttagagtatcctgttttttaaagataagaagttatgaggcaaagtacatggccagaagtacagtcctcaaataatggggacttatccctgaactattttgtagaacatcacaatttatgaatttttctttcttattgctaggtatcccatccaatgttcattaataaaaggtccgatcttgatggattttacccttaacctgaaaatttatcgtctgctgttatttgaaacatcttcagttaaattagcaatctctttctgtacaagttatccaaactttgaatattcaaatatggtcgacataagaaaagataaatttatcaatgaatcccttttaagttgataactttaacatcttagccc
gi|10 : aagccaaggtcatggtcatacagaaatagttgcctattaaaaacaccagagattgaaaatggaaatgtatgaacttcgacaacaaagttcaggtatgaaatatggaggcgcgactgtagaatttataggccctgatagagcgatagagtagctataaaagtatttagtaaaaaaaattaaacaaagtctgggttcctggtactgtgattcaggataggaatggtgggggctgggggaTAAGTAAATGATTAAATAAA-TC-GCATTTAACATTA--CTA---GCAGCATTTCGCAATTGACAATGC-GC--GTATA-TTGC-ATTACGA-TG-CCAATATAATTATGATAAATCGTATGG-----------TT-AAAT-GAAT------TTTTTCATTGT-ATGA-TTGAAG-AATGATA-ATG-AT----AGAGGCCTCTAAATGT--CCAA-A-GGTAG-GCCATTCAATGACC-TTATG-GTTGGATATATAAAGCTTATT-ATAGTATTCATAAAggagttgttttcactaagggaattttaattttagagtatcctgttttttaaagataagaagttatgaggcaaagtacatggccagaagtacagtcctcaaataatggggacttatccctgaactattttgtagaacatcacaatttatgaatttttctttcttattgctaggtatcccatccaatgttcattaataaaaggtccgatcttgatggattttacccttaacctgaaaatttatcgtctgctgttatttgaaacatcttcagttaaattagcaatctctttctgtacaagttatccaaactttgaatattcaaatatggtcgacataagaaaagataaatttatcaatgaatcccttttaagttgataactttaacatcttagccc
gi|11 : T-T-CTATGGT---------AAATTTATAGCTTG--A-TGTATGA-CT--GGCAAA-A--AAGTTTAGGTATG-GATAT--AGA-AA--TATAC---TACAT-AG-GAAAC----GAA---AGGAAAAAAATAT-C-AAC-AAGTT--G-GTTCT--GTACT-TGATACAT--ATACTAGTG-TGAAAGA-TTAAAAAAA-AA----TTAAACAAATCTATTTGT--AGACAAAATA---TAT----TCAT----------GTACACTTC-TGAAAA-TTG-CAA--CATTTTG----T-TTATAAC-TA-AGATTA---TTG------T-CAtgaagtcgttttctctaat
gi|12 : cagtttccagT-T-CTATGGT---------AAATTTATAGCTTG--A-TGTATGA-CT--GGCAAA-A--AAGTTTAGGTATG-GATAT--AGA-AA--TATAC---TACAT-AG-GAAAC----GAAAGGA----AAAAA-AT-TCAAC-AAGTT--G-GTTCT--GTACT-TGATACAT--ATACTAGTG-TGAAAGA--TTAAAAA--AA----TTAAACAAATCTATTTGT--AGACAAAATA---TAT----TCAT----------GTACACTTCTTGAAAA-TTG-CAA--CATTTTG----T-TTATAAC-TA-AGATTA---TTG------T-CAC
gi|14 : cagtttccag--AA----TCTAACGAGTTTACTTGT--AGACAAGATA---TATAAATTCAT----------GTACAATTC-TGAAAA-TTG-CAA--CATTTGG----T-T----AT-TT-TGGTTA---TTG------T-TATC-----ATTCAA------AATGAGTTC-AAAGATAAAGGTA--ATGGTAATTG-AAAATATAAAAACTTCTTGTC
gi|16 : actcgtacattacaaaggttggttatgcgtctgagaatgaagttTTA--CTA---GCTTTATTTCGCAATTGACCATGC-AATTATATATTTGC-TATTCGTTTG-CC---ATAGTTAAGATTACTTTTA-TGTTTTAAATACTTT-TAATGGAATAT-ATATTTTTGATGAC-AGGCTT----G-AAAGATA-CTA-GT-GTAGGAAGACTTg
gi|17 : AACACAAGGGGTCATGGGCATGAACAGAACTAGTT-TTCTAT------------ATATTGATAA------GATGT-TGA-C----GCAAACAACAAGTTTAGGTATG-AATACTAAGACAA--TATATCAGTACATCAATGAAA------AA---A----AGAAA-A
gi|18 : aAACACAAGG--TCAAGGTCAT--ACAGAAATAGTT-T-CTAT------------ATATTGATAA--TG--AATGTATGA-CT--GAC-AA-A--AAGTTTAGATATG-GATAT--AGA-AG--TATAC---TACAT-AA-GAAAC----AAA---A----GAAAA-Aa
gi|2 : aAACACAAGG--TCATGGTCAT--ACAGAAATAGTT-T-CTAT------------ATATTGATAA--TG--AATGTATGA-CT--GACAAA-A--AAGTTTAGGTATG-GACAT--AGA-AA--AATAC---TACAT-AA-GAAA-----GAA---A----AAAAA-AT-T-AAC-AAGTT--G-GTTCT--GTACT-TGATTCAT--ATACTAGTG-TGAAAGA-TTTTAAAA--AA----TTAAACAAATCTATTAGT--AGACAAAATA---TAT----TCAT----------GTACAATTC-TGAATA-TTG-CAA--CATTTTG----T-TTACAAC-TA-AGATTA---TTG------T-CACC-----ATACAA------AATAATTTCTAAAGATAAAGGTACTATTGTAGTTGTAGATTTTTAAAACTTTGTATCAGTATTTGTCTTTGTGTA-CAATATTTTGGACACTTCAGAAAAAAGTGAAGTGTGGTTTCAAGACTATTCT-GACAAAACTCACAATCAGGATTTTCTCTAAGAAAGTCCTTAAATAAA-TCAGCA-TTAAGATTA--CTA---GCTTTATTTCGCAATTGACAATGC-A---ATATATTAGC-TTTTCGATTG-CC---ATAGTTAGAATAAATTTTA-GG-----------TT-TTATGGAATAT-ATACTTTTAATGGC-ACGCTT----G-AAAGATA-CTA-GT-GTAGGAAGACTTCGAATAT--TCAA-G-GGTAG-GTCATTCCACAATT-TTATA-GTCGAAGGGATAAAGC-TATTCA-A-TATGTAT-AAGTACTAA
gi|20 : CAAGG--TCAAGATCAT--ACAGAAA--GTT-T-CTAT------------ATTTTGATAA--TG--AATGTATGA-CT--GACAAA-A--AAGTTTAGGTATG-GATAT--AGA-AA--Tt
gi|21 : GGTTTCAAGACTATTCT-GACAAAACTAACGATCAGGATTTTCTCTAAG--------------AA-TCAGCA-TTAA
gi|22 : -GT-GTAGGAAGACTTCGAATAC--TCAA-G-GGTTG-GTCATTCCATAATT-TTATA-GTCGta
gi|23 : AACACAAGG--TCATGGTCAT--ACAGAAATAGTT-T-CTAT------------ATATTGATAA--TG--AA
gi|25 : AACATATGA--TCAAGGTCAT--ACAGAAATAGTT-T-C
gi|3 : taC---ATATTCAAAA--ATCTTTA-CA-----------TTGTCTTTGAATTTTAGATTTTTTATG---ATGT---------AAGA----------GTTGGGAGATCTCTGATAT--GAAT-A-GGTAG-GTCATTCCATAGTTATTATTTGCTGAAGGTATAAAGC-TGTTCATA-TATG-ATGAAGTTTTAA
gi|4 : tcttttgtaTTTCAAGACTATTAT-GACAAAACTCACAATTAGGATTTTCTCTCAGAAAGTGCTTAAATAAA-TCAGCA-TGAAGATTATACTG---GCTTTATTTCGCAATTGACAGTGC-A---ATATATTTGC-TTTTCGATTG-TC---ATATTTAAAACAAGTTTTA-GG-----------TT-TAATGGAATAT-ATATTTTTAATGGG-ACGCTTTCAAGAAAAGATA-CTA-GT-GT-GAAAACCTTCGAATATACTCCA-G-GGTAG-CTCATgttgaggaggaatacatttaagaccatcattgtttctaagtggatatgagttttgtggagggatgcaaggtatcaaattggggagctatgccataagctatcttgtaaaataagataagtttatgaacttttcttctagtggttaaagtatcccagcctaattcattatacagtgctgatctttaagaatttattttcattcccgtggttattctcgcagcagtacacctgaacattctctagtaaattggcttccctttctgtacaattgtcccacattgaatttgcatactcgagaattggacgaatgaaagaaaagtaatttttcattaaagattgaagttattgtattttaaaatgtgataactttcataagttagct
gi|5 : AGGATTT-CTCTTCAGAAGTGCTTAAATAAAATCAGCA-TGAAGATTA--TTACTTGCTTTATTTCGCAATTGACAGTGC-A---ATATATTTGCCTTTTCGATTG-TC---ATATTTAAAACAAGTTTTA-GG-----------TT-TAATGGAATAT-ATATTTTAAATGG--ACGCTTTCAAG-AAAGATA-CTA-GT-G--AGAAAACTTCGAATATACTCAACGCGATAGCGTCATaataacgaagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaatggtcagtcaaaatataaaaaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttagtccttgcaaatatggggagctttttaaatcaacacaaagtttatgaattttccttcttattgctaaggtatccatccaagttcatataaagtgtcgatcgttgttatattcttaagacatttaatcgt
gi|6 : tATGTAAGA-CT--GACAAA-A--AAGTTTAGGTATG-GATAT--AGA-TA--TATAC---TACAC-AA-GGGA------------------AAA-GT-A-AAC-AAGTT--G-GTTCT--GTACT-TGGTAAA--------AGAA-TGAAAGA-TTTTATGA--AA----TTAGATCAATCTATTTGT--AGACAAAATA---TAT----TCAT----------GCACAATTA-TGAAAA-TTG-CAA--CCTTTTG----G-TTATAAC-TG-AGATTA---TTT------T-CACC-----ATACAA------AATAAGTT------ATAAAGGTA--ATTGTAATTGTCGATTGTTCAAACTTTTTATCAGTATTTGTCTTTGTGTA-CAATATTTTGGACACTTAAGAAAGACGTGAAGTGTGGTTTaatacgaagttgtagcgttatgttttatatttttgactgaccattaatctaatggctcagtcaaaatataaaaaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttagtccttgcaaatattggggagcttttgtaaatcaacacaagtttatgaattttccttcttattgctaaggtatcccatccaagttcattataaagtgtcgatcttgttatattcttaagacatttaatcgt
gi|7 : gAAAA-ATGT-AAC-AAGTT--G-GTTCT--GTACT-TGATACAT--GTACAAGTG-TGAAAAA-TTTGAAAACAAA----TTAAACAAATCTATTTGT--AGACAAAATA---TAT----TCAT----------GTACAATTC-TGAAAA-TTG-CAA--CATTTTG----T-TTATAAC-TA-AGATTA---TTG------T-CACC-----ATACAA------AATAAGTTCTAAAGATAAAGGTA--ATTGTAATTGTAGATTGTTAAAACTTTGTATCAGTATTTGTCTTTGTGTA-CAATATTTTGGACACTTCAGAAAAAAGTGACGTGTG
gi|8 : ccccctctttttcaaaggggggtatA-AT-GTGGGGAGATTTCTGATAT--GGAT-G-GACAG-GTCATTCCAGAGTT-TCATT-GTCGAAAGTATA
gi|9 : taAACACAAGG--TCA-GGTCAT--ACAGAAATAGTTCT-CTAT------------ATATTGATAA--TG--AATGTA-GA-CT--GACAAA-A--GGTCTTAGGTATG-AATAT--AGA-AGACTATAC---TACATTAA-GAAACAAAAGAA---A----AAAAA-AT-T-AAC-TAGTC--GCGTTCT--GTACT-TGATTCATGTATACTAGTG-TGAAAGG-TTTAAAAA--AA----TTAAACAAATCTATTTGT--A-ACAAAATA---TAT----TC-T----------GTACAATTC-TGAAAA--TG-CGA--CATTTTG----T-TTATAAC-TA-AGATTA---TTtgatgaagtcctaccgcaaagaagaattaattcaagaccgtcatagtttcgtagtcgttgggaattctacggaggaatgcatatgatatcaaaaataaaaaccaaaaaaggcagtactttacttttggtaaacagaaagtttgtgaactttttttctatttgattagctaggctcccagaagaatccattctcattccagtgattactcttg
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CTATTTTGTAAAATAAGATAAGTTTTTGAACTTTTCTTCTAGTGGCTAAAGTATTCCAGCCTAATTCATTATACAGTGCTGATCTAGAAGAAGTTATTCTCATTCCCGTGATTATTCTTGCAGCAGTAACCTGACCATTCTCTAGTAAATTGGCTTCCCTTTCTGTACAATTGTCCCACACTGAATTTGCATACTCGAGAATTGGACGAATAACAGAAAAA
Unaligned ( gi|15 ): ACTGGTCTTAAAGAAATTCCTCTAACATCTGTGATAATTCTTGCTGCAGAACCTTGAATGTTCTGTATCAGTTGGCTGGACTCTTTTCTGTACAATTTTCCCGTACTAAATTTTCATATTCCAGTAAAAGAAGAATAAGAGAAAAATAGGCTTTTATCAAAGCTT
Unaligned ( gi|19 ): CAATTGCAAGAAGAAATAGCCCCCTCTTATTCCAAAGGGGGGCATAAAAATCTAAAATCAAATAAATGGAATGATTATAATCTGTATGAGAGTTATGTACAAGT
Unaligned ( gi|24 ): CCCTCTTTTTCAAAGGGGGGCATAACAAAGAACAAG
Alignments
lowQualScore : 333333333333 11 111 1 2222222222222222 111 1111 1111 2222222222 1111 111111 22222 222222 11 1 1 111 11111 111 22222222222 11 2222 11 1 1 1 1 1
lowQualScore : 66 5 66 8 4 888888888888 22 66 0 4 66 4 66 4 66 4 66 000 1 5 4444444444444444 4 444 5 999 5 77 5 66 5 5 5 5 0000 5 66 9999 4 66 888 0000 1111111111 5 5 5 66 0000 5 5 5 888 666666 5 00000 333333 5 5 0 11 0 0 1 11 2 0 0 0 0 6 2 6 6 99 111 0 88888 6 6 000 1 77 1 5 77777777777 5 5 4 5 5 1 22 0 9999 5 5 4 4 6 1 33 0 5 5 6 77 0 0 0 2 3 0 2 2 1
lowQualScore : .. . .. . . ............ .. .. . . .. . .. . .. . .. ... . . ................ . ... . ... . .. . .. . . . . .... . .. .... . .. ... .... .......... . . . .. .... . . . ... ...... . ..... ...... . . . .. . . . .. . . . . . . . . . .. ... . ..... . . ... . .. . . ........... . . . . . . .. . .... . . . . . . .. . . . . .. . . . . . . . . .
lowQualScore : 99 9 99 0 0 333333333333 22 11 8 4 11 4 11 4 11 4 99 000 4 7 8888888888888888 4 000 7 333 7 99 7 99 0 0 0 0 6666 0 11 4444 4 99 888 6666 9999999999 0 0 0 99 6666 0 0 0 888 444444 7 00000 000000 6 0 8 00 8 8 4 44 5 0 0 8 8 0 5 7 7 22 777 3 55555 7 7 000 0 44 0 7 11111111111 7 1 3 4 7 0 33 7 4444 7 7 4 4 3 8 88 0 0 0 7 77 6 8 0 5 2 0 0 0 0
consensus : AACACAAGG--TCANGGTCAT--ACAGAAATAGTT-T-CTAT------------ATATTGATAA--TG--AATGTATGA-CT--GACAAA-A--AAGTTTAGGTATG-GATAT--AGA-AA--TATAC---TACAT-AA-GAAAC----GAA---A----AAAAA-AT-T-AAC-AAGTC--G-GTTCT--GTACT-TGATACAT--ATACTAG-TG-TGAAAG-A-TTTA----AAA-A--AA----TTAAACAAA-TCTATTTGT--AGACAAAATA---TAT----TCAT----------GTACAATTC-TGAAAA-TTG-CAA--CATTTTG----T-TTATAAC-TA-AGATTA---TTG------T-CACC-----ATACAA------AATAAGTTCTAAAGATAAAGGTA--ATTGTAATTGTAGATTGTTAAAACTTTTTATCAGTATTTGTCTTTGTGTA-CAATATTTTGGACACTTCAGAAAAAAGTGAAGTGTGGTTTCAAGACTATTCT-GACAAAACTCACAATCAGGATTTTCTCTAAGAAAGTGCTTAAATAAA-TCAGCA-TTAAGATTA--CTA---GCTTTATTTCGCAATTGACAATGC-A---ATATATTTGC-TTTTCGATTG-CC---ATANTTAAAATAANTTTTA-GG-----------TT-TAATGGAATAT-ATATTTTTNATGGC-ACGCTTT-AAG-AAAGATA-CTA-GT-GTAGGAAGACTTCGAATAT--TCAA-G-GGTAG-GTCATTCCATAATT-TTATN-GTCGAAGGTATAAAGC-TATTCATA-TATGCATGAAGTNCTAA
Reference ( family-824 ) : AACACAAGG--TCANGGTCAT--ACAGAAATAGTT-T-CTAT------------ATATTGATAA--TG--AATGTATGA-CT--GACAAA-A--AAGTTTAGGTATG-GATAT--AGA-AA--TATAC---TACAT-AA-GAAAC----GAA---A----AAAAA-AT-T-AAC-AAGTC--G-GTTCT--GTACT-TGATACAT--ATACTAG-TG-TGAAAG-A-TTTA----AAA-A--AA----TTAAACAAA-TCTATTTGT--AGACAAAATA---TAT----TCAT----------GTACAATTC-TGAAAA-TTG-CAA--CATTTTG----T-TTATAAC-TA-AGATTA---TTG------T-CACC-----ATACAA------AATAAGTTCTAAAGATAAAGGTA--ATTGTAATTGTAGATTGTTAAAACTTTTTATCAGTATTTGTCTTTGTGTA-CAATATTTTGGACACTTCAGAAAAAAGTGAAGTGTGGTTTCAAGACTATTCT-GACAAAACTCACAATCAGGATTTTCTCTAAGAAAGTGCTTAAATAAA-TCAGCA-TTAAGATTA--CTA---GCTTTATTTCGCAATTGACAATGC-A---ATATATTTGC-TTTTCGATTG-CC---ATANTTAAAATAANTTTTA-GG-----------TT-TAATGGAATAT-ATATTTTTNATGGC-ACGCTTT-AAG-AAAGATA-CTA-GT-GTAGGAAGACTTCGAATAT--TCAA-G-GGTAG-GTCATTCCATAATT-TTATN-GTCGAAGGTATAAAGC-TATTCATA-TATGCATGAAGTNCTAA
gi|1 : CAAGG--TCATGGTCAT--ACAGAAATAGTTGC-CTATTAAAAACACCAGAGATTGAAAA--TGGAAATGTATGAACTTCGACAAC-A--AAGTTCAGGTATGAAATAT--GGA-
gi|1 : aagcAT--AGAGTAGCTA-TAAAAGTA-TTTAGTAAAAA-A--AA----TTAAACAAAGTCTggcgcgactgtagaatttataggccctgatagagcgatagagtagctataaaagtatttagtaaaaaaaattaaacaaagtctgggttcctggtactgtgattcaggataggaatggtgggggctgggggaatatcagtggtgaaagagtttaaaaaaaattattaaacaaatctatttgtgtagacaagagagtttattcatcgttgaatgggtacaattctgaaaaattggcaaaacattttggtattattatcacctacagattagggttggaggagtacaccgctagatattatcatccaataagttctagaataaggtaattgtagtgtagattattaaaacttttatcatatttgtctttgtgtaacaatactttggaccattcagaaaaaagtgaagtgtggtttcaagactattctggacaaaactcacaatcaggatttctctagaaaaggtcttaaataaatcagcattaagatactagcttttttcgcaattgacatggcaaatatattagtcttcgattgtccatagttaatatacttttaggtttattgaatttatactttttatggcaacgcttgaaagatacctacgtggtaggaagcttgaatattcaaggggtaggtcacatcacaattttatagtcgaagggataagctattcatataggagttgttttcactaagggaattttaattttagagtatcctgttttttaaagataagaagttatgaggcaaagtacatggccagaagtacagtcctcaaataatggggacttatccctgaactattttgtagaacatcacaatttatgaatttttctttcttattgctaggtatcccatccaatgttcattaataaaaggtccgatcttgatggattttacccttaacctgaaaatttatcgtctgctgttatttgaaacatcttcagttaaattagcaatctctttctgtacaagttatccaaactttgaatattcaaatatggtcgacataagaaaagataaatttatcaatgaatcccttttaagttgataactttaacatcttagccc
gi|1 : aagccaaggtcatggtcatacagaaatagttgcctattaaaaacaccagagattgaaaatggaaatgtatgaacttcgacaacaaagttcaggtatgaaatatggaggcgcgactgtagaatttataggccctgatagagcgA---A----AAAAA-AT-TAAACAAAGTCTGG-GTTCCTGGTACTGTGATgggttcctggtactgtgattcaggataggaatggtgggggctgggggaatatcagtggtgaaagagtttaaaaaaaattattaaacaaatctatttgtgtagacaagagagtttattcatcgttgaatgggtacaattctgaaaaattggcaaaacattttggtattattatcacctacagattagggttggaggagtacaccgctagatattatcatccaataagttctagaataaggtaattgtagtgtagattattaaaacttttatcatatttgtctttgtgtaacaatactttggaccattcagaaaaaagtgaagtgtggtttcaagactattctggacaaaactcacaatcaggatttctctagaaaaggtcttaaataaatcagcattaagatactagcttttttcgcaattgacatggcaaatatattagtcttcgattgtccatagttaatatacttttaggtttattgaatttatactttttatggcaacgcttgaaagatacctacgtggtaggaagcttgaatattcaaggggtaggtcacatcacaattttatagtcgaagggataagctattcatataggagttgttttcactaagggaattttaattttagagtatcctgttttttaaagataagaagttatgaggcaaagtacatggccagaagtacagtcctcaaataatggggacttatccctgaactattttgtagaacatcacaatttatgaatttttctttcttattgctaggtatcccatccaatgttcattaataaaaggtccgatcttgatggattttacccttaacctgaaaatttatcgtctgctgttatttgaaacatcttcagttaaattagcaatctctttctgtacaagttatccaaactttgaatattcaaatatggtcgacataagaaaagataaatttatcaatgaatcccttttaagttgataactttaacatcttagccc
gi|1 : aagccaaggtcatggtcatacagaaatagttgcctattaaaaacaccagagattgaaaatggaaatgtatgaacttcgacaacaaagttcaggtatgaaatatggaggcgcgactgtagaatttataggccctgatagagcgatagagtagctataaaagtatttagt--ATATCAG-TGGTGAAAG-AGTTTA----AAA-A--AAATTATTAAACAAA-TCTATTTGTGTAGACAAGAGAGTTTAT----TCATCGTTGAATGGGTACAATTC-TGAAAAATTGGCAAAACATTTTGGTATTATTATCACCTACAGATTAGGGTTGGAGGAGTACACCGCTAGATATTATCATCCAATAAGTTCTAGA-ATAA-GGTA--ATTGTAGT-GTAGATTATTAAAACTTTT-ATCA-TATTTGTCTTTGTGTAACAATACTTTGGACCATTCAGAAAAAAGTGAAGTGTGGTTTCAAGACTATTCTGGACAAAACTCACAATCAGGA-TTTCTCTAGAAAAGGTCTTAAATAAA-TCAGCA-TTAAGA-TA--CTA---GCTTT-TTTCGCAATTGACATGGCAA---ATATATTAG--TCTTCGATTGTCC---ATAGTTAATAT-ACTTTTA-GG-----------TT-T-ATTGAATTT-ATACTTTTTATGGCAACGCTT----G-AAAGATACCTACGTGGTAGGAAG-CTT-GAATAT--TCAAGG-GGTAG-GTCACATCACAATT-TTATA-GTCGAAGGGAT-AAGC-TATTCATA-TAtcaggataggaatggtgggggctgggggaatatcagtggtgaaagagtttaaaaaaaattattaaacaaatctatttgtgtagacaagagagtttattcatcgttgaatgggtacaattctgaaaaattggcaaaacattttggtattattatcacctacagattagggttggaggagtacaccgctagatattatcatccaataagttctagaataaggtaattgtagtgtagattattaaaacttttatcatatttgtctttgtgtaacaatactttggaccattcagaaaaaagtgaagtgtggtttcaagactattctggacaaaactcacaatcaggatttctctagaaaaggtcttaaataaatcagcattaagatactagcttttttcgcaattgacatggcaaatatattagtcttcgattgtccatagttaatatacttttaggtttattgaatttatactttttatggcaacgcttgaaagatacctacgtggtaggaagcttgaatattcaaggggtaggtcacatcacaattttatagtcgaagggataagctattcatataggagttgttttcactaagggaattttaattttagagtatcctgttttttaaagataagaagttatgaggcaaagtacatggccagaagtacagtcctcaaataatggggacttatccctgaactattttgtagaacatcacaatttatgaatttttctttcttattgctaggtatcccatccaatgttcattaataaaaggtccgatcttgatggattttacccttaacctgaaaatttatcgtctgctgttatttgaaacatcttcagttaaattagcaatctctttctgtacaagttatccaaactttgaatattcaaatatggtcgacataagaaaagataaatttatcaatgaatcccttttaagttgataactttaacatcttagccc
gi|10 : aagccaaggtcatggtcatacagaaatagttgcctattaaaaacaccagagattgaaaatggaaatgtatgaacttcgacaacaaagttcaggtatgaaatatggaggcgcgactgtagaatttataggccctgatagagcgatagagtagctataaaagtatttagtaaaaaaaattaaacaaagtctgggttcctggtactgtgattcaggataggaatggtgggggctgggggaTAAGTAAATGATTAAATAAA-TC-GCATTTAACATTA--CTA---GCAGCATTTCGCAATTGACAATGC-GC--GTATA-TTGC-ATTACGA-TG-CCAATATAATTATGATAAATCGTATGG-----------TT-AAAT-GAAT------TTTTTCATTGT-ATGATTG-AAG-AATGATA-ATG-AT----AGAGGCCTCTAAATGT--CCAA-A-GGTAG-GCCATTCAATGACC-TTATG-GTTGGATATATAAAGCTTATT-ATAGTATTCATAAAggagttgttttcactaagggaattttaattttagagtatcctgttttttaaagataagaagttatgaggcaaagtacatggccagaagtacagtcctcaaataatggggacttatccctgaactattttgtagaacatcacaatttatgaatttttctttcttattgctaggtatcccatccaatgttcattaataaaaggtccgatcttgatggattttacccttaacctgaaaatttatcgtctgctgttatttgaaacatcttcagttaaattagcaatctctttctgtacaagttatccaaactttgaatattcaaatatggtcgacataagaaaagataaatttatcaatgaatcccttttaagttgataactttaacatcttagccc
gi|11 : T-T-CTATGGT---------AAATTTATAGCTTG--A-TGTATGA-CT--GGCAAA-A--AAGTTTAGGTATG-GATAT--AGA-AA--TATAC---TACAT-AG-GAAAC----GAA---AGGAAAAAAATAT-C-AAC-AAGTT--G-GTTCT--GTACT-TGATACAT--ATACTAG-TG-TGAAAG-A-TTAA----AAAAA--AA----TTAAACAAA-TCTATTTGT--AGACAAAATA---TAT----TCAT----------GTACACTTC-TGAAAA-TTG-CAA--CATTTTG----T-TTATAAC-TA-AGATTA---TTG------T-CAtgaagtcgttttctctaat
gi|12 : cagtttccagT-T-CTATGGT---------AAATTTATAGCTTG--A-TGTATGA-CT--GGCAAA-A--AAGTTTAGGTATG-GATAT--AGA-AA--TATAC---TACAT-AG-GAAAC----GAAAGGA----AAAAA-AT-TCAAC-AAGTT--G-GTTCT--GTACT-TGATACAT--ATACTAG-TG-TGAAAG-A--TTA----AAA-A--AA----TTAAACAAA-TCTATTTGT--AGACAAAATA---TAT----TCAT----------GTACACTTCTTGAAAA-TTG-CAA--CATTTTG----T-TTATAAC-TA-AGATTA---TTG------T-CAC
gi|14 : cagtttccag--AA----TCTAACGAG-TTTACTTGT--AGACAAGATA---TATAAATTCAT----------GTACAATTC-TGAAAA-TTG-CAA--CATTTGG----T-T----AT-TT-TGGTTA---TTG------T-TATC-----ATTCAA------AATGAGTTC-AAAGATAAAGGTA--ATGGTAATTG-AAAATATAAAAACTTCTTGTC
gi|16 : actcgtacattacaaaggttggttatgcgtctgagaatgaagttTTA--CTA---GCTTTATTTCGCAATTGACCATGC-AATTATATATTTGC-TATTCGTTTG-CC---ATAGTTAAGATTACTTTTA-TGTTTTAAATACTTT-TAATGGAATAT-ATATTTTTGATGAC-AGGCTT----G-AAAGATA-CTA-GT-GTAGGAAGACTTg
gi|17 : AACACAAGGGGTCATGGGCATGAACAGAACTAGTT-TTCTAT------------ATATTGATAA------GATGT-TGA-C----GCAAACAACAAGTTTAGGTATG-AATACTAAGACAA--TATATCAGTACATCAATGAAA------AA---A----AGAAA-A
gi|18 : aAACACAAGG--TCAAGGTCAT--ACAGAAATAGTT-T-CTAT------------ATATTGATAA--TG--AATGTATGA-CT--GAC-AA-A--AAGTTTAGATATG-GATAT--AGA-AG--TATAC---TACAT-AA-GAAAC----AAA---A----GAAAA-Aa
gi|2 : aAACACAAGG--TCATGGTCAT--ACAGAAATAGTT-T-CTAT------------ATATTGATAA--TG--AATGTATGA-CT--GACAAA-A--AAGTTTAGGTATG-GACAT--AGA-AA--AATAC---TACAT-AA-GAAA-----GAA---A----AAAAA-AT-T-AAC-AAGTT--G-GTTCT--GTACT-TGATTCAT--ATACTAG-TG-TGAAAG-A-TTTT----AAA-A--AA----TTAAACAAA-TCTATTAGT--AGACAAAATA---TAT----TCAT----------GTACAATTC-TGAATA-TTG-CAA--CATTTTG----T-TTACAAC-TA-AGATTA---TTG------T-CACC-----ATACAA------AATAATTTCTAAAGATAAAGGTACTATTGTAGTTGTAGATTTTTAAAACTTTGTATCAGTATTTGTCTTTGTGTA-CAATATTTTGGACACTTCAGAAAAAAGTGAAGTGTGGTTTCAAGACTATTCT-GACAAAACTCACAATCAGGATTTTCTCTAAGAAAGTCCTTAAATAAA-TCAGCA-TTAAGATTA--CTA---GCTTTATTTCGCAATTGACAATGC-A---ATATATTAGC-TTTTCGATTG-CC---ATAGTTAGAATAAATTTTA-GG-----------TT-TTATGGAATAT-ATACTTTTAATGGC-ACGCTT----G-AAAGATA-CTA-GT-GTAGGAAGACTTCGAATAT--TCAA-G-GGTAG-GTCATTCCACAATT-TTATA-GTCGAAGGGATAAAGC-TATTCA-A-TATGTAT-AAGTACTAA
gi|20 : CAAGG--TCAAGATCAT--ACAGAAA--GTT-T-CTAT------------ATTTTGATAA--TG--AATGTATGA-CT--GACAAA-A--AAGTTTAGGTATG-GATAT--AGA-AA--Tt
gi|21 : GGTTTCAAGACTATTCT-GACAAAACTAACGATCAGGATTTTCTCTAAG--------------AA-TCAGCA-TTAA
gi|22 : -GT-GTAGGAAGACTTCGAATAC--TCAA-G-GGTTG-GTCATTCCATAATT-TTATA-GTCGta
gi|23 : AACACAAGG--TCATGGTCAT--ACAGAAATAGTT-T-CTAT------------ATATTGATAA--TG--AA
gi|25 : AACATATGA--TCAAGGTCAT--ACAGAAATAGTT-T-C
gi|3 : taC---ATATTCAAAA--ATCTTTA-CA-----------TTGTCTTTGAATTTTAGATTTTTTATG---ATG---T-AAG-A--------------GTTGGGAGATCTCTGATAT--GAAT-A-GGTAG-GTCATTCCATAGTTATTATTTGCTGAAGGTATAAAGC-TGTTCATA-TATG-ATGAAGTTTTAA
gi|4 : tcttttgtaTTTCAAGACTATTAT-GACAAAACTCACAATTAGGATTTTCTCTCAGAAAGTGCTTAAATAAA-TCAGCA-TGAAGATTATACTG---GCTTTATTTCGCAATTGACAGTGC-A---ATATATTTGC-TTTTCGATTG-TC---ATATTTAAAACAAGTTTTA-GG-----------TT-TAATGGAATAT-ATATTTTTAATGGG-ACGCTTTCAAGAAAAGATA-CTA-GT-GT-GAAAACCTTCGAATATACTCCA-G-GGTAG-CTCATgttgaggaggaatacatttaagaccatcattgtttctaagtggatatgagttttgtggagggatgcaaggtatcaaattggggagctatgccataagctatcttgtaaaataagataagtttatgaacttttcttctagtggttaaagtatcccagcctaattcattatacagtgctgatctttaagaatttattttcattcccgtggttattctcgcagcagtacacctgaacattctctagtaaattggcttccctttctgtacaattgtcccacattgaatttgcatactcgagaattggacgaatgaaagaaaagtaatttttcattaaagattgaagttattgtattttaaaatgtgataactttcataagttagct
gi|5 : AGGATTT-CTCTTCAGAAGTGCTTAAATAAAATCAGCA-TGAAGATTA--TTACTTGCTTTATTTCGCAATTGACAGTGC-A---ATATATTTGCCTTTTCGATTG-TC---ATATTTAAAACAAGTTTTA-GG-----------TT-TAATGGAATAT-ATATTTTAAATGG--ACGCTTTCAAG-AAAGATA-CTA-GT-G--AGAAAACTTCGAATATACTCAACGCGATAGCGTCATaataacgaagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaatggtcagtcaaaatataaaaaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttagtccttgcaaatatggggagctttttaaatcaacacaaagtttatgaattttccttcttattgctaaggtatccatccaagttcatataaagtgtcgatcgttgttatattcttaagacatttaatcgt
gi|6 : tATGTAAGA-CT--GACAAA-A--AAGTTTAGGTATG-GATAT--AGA-TA--TATAC---TACAC-AA-GGGA------------------AAA-GT-A-AAC-AAGTT--G-GTTCT--GTACT-TGGTAAA--------AG-AA-TGAAAG-A-TTTT----ATG-A--AA----TTAGATCAA-TCTATTTGT--AGACAAAATA---TAT----TCAT----------GCACAATTA-TGAAAA-TTG-CAA--CCTTTTG----G-TTATAAC-TG-AGATTA---TTT------T-CACC-----ATACAA------AATAAGTT------ATAAAGGTA--ATTGTAATTGTCGATTGTTCAAACTTTTTATCAGTATTTGTCTTTGTGTA-CAATATTTTGGACACTTAAGAAAGACGTGAAGTGTGGTTTaatacgaagttgtagcgttatgttttatatttttgactgaccattaatctaatggctcagtcaaaatataaaaaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttagtccttgcaaatattggggagcttttgtaaatcaacacaagtttatgaattttccttcttattgctaaggtatcccatccaagttcattataaagtgtcgatcttgttatattcttaagacatttaatcgt
gi|7 : gAAAA-ATGT-AAC-AAGTT--G-GTTCT--GTACT-TGATACAT--GTACAAG-TG-TGAAAA-A-TTTG----AAA-ACAAA----TTAAACAAA-TCTATTTGT--AGACAAAATA---TAT----TCAT----------GTACAATTC-TGAAAA-TTG-CAA--CATTTTG----T-TTATAAC-TA-AGATTA---TTG------T-CACC-----ATACAA------AATAAGTTCTAAAGATAAAGGTA--ATTGTAATTGTAGATTGTTAAAACTTTGTATCAGTATTTGTCTTTGTGTA-CAATATTTTGGACACTTCAGAAAAAAGTGACGTGTG
gi|8 : ccccctctttttcaaaggggggtatA-AT-GTGGGGAGATTTCTGATAT--GGAT-G-GACAG-GTCATTCCAGAGTT-TCATT-GTCGAAAGTATA
gi|9 : taAACACAAGG--TCA-GGTCAT--ACAGAAATAGTTCT-CTAT------------ATATTGATAA--TG--AATGTA-GA-CT--GACAAA-A--GGTCTTAGGTATG-AATAT--AGA-AGACTATAC---TACATTAA-GAAACAAAAGAA---A----AAAAA-AT-T-AAC-TAGTC--GCGTTCT--GTACT-TGATTCATGTATACTAG-TG-TGAAAG-G-TTTA----AAA-A--AA----TTAAACAAA-TCTATTTGT--A-ACAAAATA---TAT----TC-T----------GTACAATTC-TGAAAA--TG-CGA--CATTTTG----T-TTATAAC-TA-AGATTA---TTtgatgaagtcctaccgcaaagaagaattaattcaagaccgtcatagtttcgtagtcgttgggaattctacggaggaatgcatatgatatcaaaaataaaaaccaaaaaaggcagtactttacttttggtaaacagaaagtttgtgaactttttttctatttgattagctaggctcccagaagaatccattctcattccagtgattactcttg
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CTATTTTGTAAAATAAGATAAGTTTTTGAACTTTTCTTCTAGTGGCTAAAGTATTCCAGCCTAATTCATTATACAGTGCTGATCTAGAAGAAGTTATTCTCATTCCCGTGATTATTCTTGCAGCAGTAACCTGACCATTCTCTAGTAAATTGGCTTCCCTTTCTGTACAATTGTCCCACACTGAATTTGCATACTCGAGAATTGGACGAATAACAGAAAAA
Unaligned ( gi|15 ): ACTGGTCTTAAAGAAATTCCTCTAACATCTGTGATAATTCTTGCTGCAGAACCTTGAATGTTCTGTATCAGTTGGCTGGACTCTTTTCTGTACAATTTTCCCGTACTAAATTTTCATATTCCAGTAAAAGAAGAATAAGAGAAAAATAGGCTTTTATCAAAGCTT
Unaligned ( gi|19 ): CAATTGCAAGAAGAAATAGCCCCCTCTTATTCCAAAGGGGGGCATAAAAATCTAAAATCAAATAAATGGAATGATTATAATCTGTATGAGAGTTATGTACAAGT
Unaligned ( gi|24 ): CCCTCTTTTTCAAAGGGGGGCATAACAAAGAACAAG
Alignments
lowQualScore : 333333333333 11 111 1 2222222222222222 111 1111 1111 2222222222 1111 111111 22222 222222 11 1 1 111 11111 111 22222222222 11 2222 11 1 1 1 1 1
lowQualScore : 66 5 66 8 4 888888888888 22 66 0 4 66 4 66 4 66 4 66 000 1 5 4444444444444444 4 444 5 999 5 77 5 66 5 5 5 5 0000 5 66 9999 4 66 888 0000 1111111111 5 5 5 66 0000 5 5 5 888 666666 5 00000 333333 5 5 0 11 0 0 1 11 2 0 0 0 0 6 2 6 6 99 111 0 88888 6 6 000 1 77 1 5 77777777777 5 5 4 5 5 1 22 0 9999 5 5 4 4 6 1 33 0 5 5 6 77 0 0 0 2 3 0 2 2 1
lowQualScore : .. . .. . . ............ .. .. . . .. . .. . .. . .. ... . . ................ . ... . ... . .. . .. . . . . .... . .. .... . .. ... .... .......... . . . .. .... . . . ... ...... . ..... ...... . . . .. . . . .. . . . . . . . . . .. ... . ..... . . ... . .. . . ........... . . . . . . .. . .... . . . . . . .. . . . . .. . . . . . . . . .
lowQualScore : 99 9 99 0 0 333333333333 22 11 8 4 11 4 11 4 11 4 99 000 4 7 8888888888888888 4 000 7 333 7 99 7 99 0 0 0 0 6666 0 11 4444 4 99 888 6666 9999999999 0 0 0 99 6666 0 0 0 888 444444 7 00000 000000 6 0 8 00 8 8 4 44 5 0 0 8 8 0 5 7 7 22 777 3 55555 7 7 000 0 44 0 7 11111111111 7 1 3 4 7 0 33 7 4444 7 7 4 4 3 8 88 0 0 0 7 77 6 8 0 5 2 0 0 0 0
consensus : AACACAAGG--TCANGGTCAT--ACAGAAATAGTT-T-CTAT------------ATATTGATAA--TG--AATGTATGA-CT--GACAAA-A--AAGTTTAGGTATG-GATAT--AGA-AA--TATAC---TACAT-AA-GAAAC----GAA---A----AAAAA-AT-T-AAC-AAGTC--G-GTTCT--GTACT-TGATACAT--ATACTAG-TG-TGAAAG-A-TTTA----AAA-A--AA----TTAAACAAA-TCTATTTGT--AGACAAAATA---TAT----TCAT----------GTACAATTC-TGAAAA-TTG-CAA--CATTTTG----T-TTATAAC-TA-AGATTA---TTG------T-CACC-----ATACAA------AATAAGTTCTAAAGATAAAGGTA--ATTGTAATTGTAGATTGTTAAAACTTTTTATCAGTATTTGTCTTTGTGTA-CAATATTTTGGACACTTCAGAAAAAAGTGAAGTGTGGTTTCAAGACTATTCT-GACAAAACTCACAATCAGGATTTTCTCTAAGAAAGTGCTTAAATAAA-TCAGCA-TTAAGATTA--CTA---GCTTTATTTCGCAATTGACAATGC-A---ATATATTTGC-TTTTCGATTG-CC---ATANTTAAAATAANTTTTA-GG-----------TT-TAATGGAATAT-ATATTTTTNATGGC-ACGCTTT-AAG-AAAGATA-CTA-GT-GTAGGAAGACTTCGAATAT--TCAA-G-GGTAG-GTCATTCCATAATT-TTATN-GTCGAAGGTATAAAGC-TATTCATA-TATGCATGAAGTNCTAA
Reference ( family-824 ) : AACACAAGG--TCANGGTCAT--ACAGAAATAGTT-T-CTAT------------ATATTGATAA--TG--AATGTATGA-CT--GACAAA-A--AAGTTTAGGTATG-GATAT--AGA-AA--TATAC---TACAT-AA-GAAAC----GAA---A----AAAAA-AT-T-AAC-AAGTC--G-GTTCT--GTACT-TGATACAT--ATACTAG-TG-TGAAAG-A-TTTA----AAA-A--AA----TTAAACAAA-TCTATTTGT--AGACAAAATA---TAT----TCAT----------GTACAATTC-TGAAAA-TTG-CAA--CATTTTG----T-TTATAAC-TA-AGATTA---TTG------T-CACC-----ATACAA------AATAAGTTCTAAAGATAAAGGTA--ATTGTAATTGTAGATTGTTAAAACTTTTTATCAGTATTTGTCTTTGTGTA-CAATATTTTGGACACTTCAGAAAAAAGTGAAGTGTGGTTTCAAGACTATTCT-GACAAAACTCACAATCAGGATTTTCTCTAAGAAAGTGCTTAAATAAA-TCAGCA-TTAAGATTA--CTA---GCTTTATTTCGCAATTGACAATGC-A---ATATATTTGC-TTTTCGATTG-CC---ATANTTAAAATAANTTTTA-GG-----------TT-TAATGGAATAT-ATATTTTTNATGGC-ACGCTTT-AAG-AAAGATA-CTA-GT-GTAGGAAGACTTCGAATAT--TCAA-G-GGTAG-GTCATTCCATAATT-TTATN-GTCGAAGGTATAAAGC-TATTCATA-TATGCATGAAGTNCTAA
gi|1 : CAAGG--TCATGGTCAT--ACAGAAATAGTTGC-CTATTAAAAACACCAGAGATTGAAAA--TGGAAATGTATGAACTTCGACAAC-A--AAGTTCAGGTATGAAATAT--GGA-
gi|1 : aagcAT--AGAGTAGCTA-TAAAAGTA-TTTAGTAAAAA-A--AA----TTAAACAAAGTCTggcgcgactgtagaatttataggccctgatagagcgatagagtagctataaaagtatttagtaaaaaaaattaaacaaagtctgggttcctggtactgtgattcaggataggaatggtgggggctgggggaatatcagtggtgaaagagtttaaaaaaaattattaaacaaatctatttgtgtagacaagagagtttattcatcgttgaatgggtacaattctgaaaaattggcaaaacattttggtattattatcacctacagattagggttggaggagtacaccgctagatattatcatccaataagttctagaataaggtaattgtagtgtagattattaaaacttttatcatatttgtctttgtgtaacaatactttggaccattcagaaaaaagtgaagtgtggtttcaagactattctggacaaaactcacaatcaggatttctctagaaaaggtcttaaataaatcagcattaagatactagcttttttcgcaattgacatggcaaatatattagtcttcgattgtccatagttaatatacttttaggtttattgaatttatactttttatggcaacgcttgaaagatacctacgtggtaggaagcttgaatattcaaggggtaggtcacatcacaattttatagtcgaagggataagctattcatataggagttgttttcactaagggaattttaattttagagtatcctgttttttaaagataagaagttatgaggcaaagtacatggccagaagtacagtcctcaaataatggggacttatccctgaactattttgtagaacatcacaatttatgaatttttctttcttattgctaggtatcccatccaatgttcattaataaaaggtccgatcttgatggattttacccttaacctgaaaatttatcgtctgctgttatttgaaacatcttcagttaaattagcaatctctttctgtacaagttatccaaactttgaatattcaaatatggtcgacataagaaaagataaatttatcaatgaatcccttttaagttgataactttaacatcttagccc
gi|1 : aagccaaggtcatggtcatacagaaatagttgcctattaaaaacaccagagattgaaaatggaaatgtatgaacttcgacaacaaagttcaggtatgaaatatggaggcgcgactgtagaatttataggccctgatagagcgA---A----AAAAA-AT-TAAACAAAGTCTGG-GTTCCTGGTACTGTGATgggttcctggtactgtgattcaggataggaatggtgggggctgggggaatatcagtggtgaaagagtttaaaaaaaattattaaacaaatctatttgtgtagacaagagagtttattcatcgttgaatgggtacaattctgaaaaattggcaaaacattttggtattattatcacctacagattagggttggaggagtacaccgctagatattatcatccaataagttctagaataaggtaattgtagtgtagattattaaaacttttatcatatttgtctttgtgtaacaatactttggaccattcagaaaaaagtgaagtgtggtttcaagactattctggacaaaactcacaatcaggatttctctagaaaaggtcttaaataaatcagcattaagatactagcttttttcgcaattgacatggcaaatatattagtcttcgattgtccatagttaatatacttttaggtttattgaatttatactttttatggcaacgcttgaaagatacctacgtggtaggaagcttgaatattcaaggggtaggtcacatcacaattttatagtcgaagggataagctattcatataggagttgttttcactaagggaattttaattttagagtatcctgttttttaaagataagaagttatgaggcaaagtacatggccagaagtacagtcctcaaataatggggacttatccctgaactattttgtagaacatcacaatttatgaatttttctttcttattgctaggtatcccatccaatgttcattaataaaaggtccgatcttgatggattttacccttaacctgaaaatttatcgtctgctgttatttgaaacatcttcagttaaattagcaatctctttctgtacaagttatccaaactttgaatattcaaatatggtcgacataagaaaagataaatttatcaatgaatcccttttaagttgataactttaacatcttagccc
gi|1 : aagccaaggtcatggtcatacagaaatagttgcctattaaaaacaccagagattgaaaatggaaatgtatgaacttcgacaacaaagttcaggtatgaaatatggaggcgcgactgtagaatttataggccctgatagagcgatagagtagctataaaagtatttagt--ATATCAG-TGGTGAAAG-AGTTTA----AAA-A--AAATTATTAAACAAA-TCTATTTGTGTAGACAAGAGAGTTTAT----TCATCGTTGAATGGGTACAATTC-TGAAAAATTGGCAAAACATTTTGGTATTATTATCACCTACAGATTAGGGTTGGAGGAGTACACCGCTAGATATTATCATCCAATAAGTTCTAGA-ATAA-GGTA--ATTGTAGT-GTAGATTATTAAAACTTTT-ATCA-TATTTGTCTTTGTGTAACAATACTTTGGACCATTCAGAAAAAAGTGAAGTGTGGTTTCAAGACTATTCTGGACAAAACTCACAATCAGGA-TTTCTCTAGAAAAGGTCTTAAATAAA-TCAGCA-TTAAGA-TA--CTA---GCTTT-TTTCGCAATTGACATGGCAA---ATATATTAG--TCTTCGATTGTCC---ATAGTTAATAT-ACTTTTA-GG-----------TT-T-ATTGAATTT-ATACTTTTTATGGCAACGCTT----G-AAAGATACCTACGTGGTAGGAAG-CTT-GAATAT--TCAAGG-GGTAG-GTCACATCACAATT-TTATA-GTCGAAGGGAT-AAGC-TATTCATA-TAtcaggataggaatggtgggggctgggggaatatcagtggtgaaagagtttaaaaaaaattattaaacaaatctatttgtgtagacaagagagtttattcatcgttgaatgggtacaattctgaaaaattggcaaaacattttggtattattatcacctacagattagggttggaggagtacaccgctagatattatcatccaataagttctagaataaggtaattgtagtgtagattattaaaacttttatcatatttgtctttgtgtaacaatactttggaccattcagaaaaaagtgaagtgtggtttcaagactattctggacaaaactcacaatcaggatttctctagaaaaggtcttaaataaatcagcattaagatactagcttttttcgcaattgacatggcaaatatattagtcttcgattgtccatagttaatatacttttaggtttattgaatttatactttttatggcaacgcttgaaagatacctacgtggtaggaagcttgaatattcaaggggtaggtcacatcacaattttatagtcgaagggataagctattcatataggagttgttttcactaagggaattttaattttagagtatcctgttttttaaagataagaagttatgaggcaaagtacatggccagaagtacagtcctcaaataatggggacttatccctgaactattttgtagaacatcacaatttatgaatttttctttcttattgctaggtatcccatccaatgttcattaataaaaggtccgatcttgatggattttacccttaacctgaaaatttatcgtctgctgttatttgaaacatcttcagttaaattagcaatctctttctgtacaagttatccaaactttgaatattcaaatatggtcgacataagaaaagataaatttatcaatgaatcccttttaagttgataactttaacatcttagccc
gi|10 : aagccaaggtcatggtcatacagaaatagttgcctattaaaaacaccagagattgaaaatggaaatgtatgaacttcgacaacaaagttcaggtatgaaatatggaggcgcgactgtagaatttataggccctgatagagcgatagagtagctataaaagtatttagtaaaaaaaattaaacaaagtctgggttcctggtactgtgattcaggataggaatggtgggggctgggggaTAAGTAAATGATTAAATAAA-TC-GCATTTAACATTA--CTA---GCAGCATTTCGCAATTGACAATGC-GC--GTATA-TTGC-ATTACGA-TG-CCAATATAATTATGATAAATCGTATGG-----------TT-AAAT-GAAT------TTTTTCATTGT-ATGATTG-AAG-AATGATA-ATG-AT----AGAGGCCTCTAAATGT--CCAA-A-GGTAG-GCCATTCAATGACC-TTATG-GTTGGATATATAAAGCTTATT-ATAGTATTCATAAAggagttgttttcactaagggaattttaattttagagtatcctgttttttaaagataagaagttatgaggcaaagtacatggccagaagtacagtcctcaaataatggggacttatccctgaactattttgtagaacatcacaatttatgaatttttctttcttattgctaggtatcccatccaatgttcattaataaaaggtccgatcttgatggattttacccttaacctgaaaatttatcgtctgctgttatttgaaacatcttcagttaaattagcaatctctttctgtacaagttatccaaactttgaatattcaaatatggtcgacataagaaaagataaatttatcaatgaatcccttttaagttgataactttaacatcttagccc
gi|11 : T-T-CTATGGT---------AAATTTATAGCTTG--A-TGTATGA-CT--GGCAAA-A--AAGTTTAGGTATG-GATAT--AGA-AA--TATAC---TACAT-AG-GAAAC----GAA---AGGAAAAAAATAT-C-AAC-AAGTT--G-GTTCT--GTACT-TGATACAT--ATACTAG-TG-TGAAAG-A-TTAA----AAAAA--AA----TTAAACAAA-TCTATTTGT--AGACAAAATA---TAT----TCAT----------GTACACTTC-TGAAAA-TTG-CAA--CATTTTG----T-TTATAAC-TA-AGATTA---TTG------T-CAtgaagtcgttttctctaat
gi|12 : cagtttccagT-T-CTATGGT---------AAATTTATAGCTTG--A-TGTATGA-CT--GGCAAA-A--AAGTTTAGGTATG-GATAT--AGA-AA--TATAC---TACAT-AG-GAAAC----GAAAGGA----AAAAA-AT-TCAAC-AAGTT--G-GTTCT--GTACT-TGATACAT--ATACTAG-TG-TGAAAG-A--TTA----AAA-A--AA----TTAAACAAA-TCTATTTGT--AGACAAAATA---TAT----TCAT----------GTACACTTCTTGAAAA-TTG-CAA--CATTTTG----T-TTATAAC-TA-AGATTA---TTG------T-CAC
gi|14 : cagtttccag--AA----TCTAACGAG-TTTACTTGT--AGACAAGATA---TATAAATTCAT----------GTACAATTC-TGAAAA-TTG-CAA--CATTTGG----T-T----AT-TT-TGGTTA---TTG------T-TATC-----ATTCAA------AATGAGTTC-AAAGATAAAGGTA--ATGGTAATTG-AAAATATAAAAACTTCTTGTC
gi|16 : actcgtacattacaaaggttggttatgcgtctgagaatgaagttTTA--CTA---GCTTTATTTCGCAATTGACCATGC-AATTATATATTTGC-TATTCGTTTG-CC---ATAGTTAAGATTACTTTTA-TGTTTTAAATACTTT-TAATGGAATAT-ATATTTTTGATGAC-AGGCTT----G-AAAGATA-CTA-GT-GTAGGAAGACTTg
gi|17 : AACACAAGGGGTCATGGGCATGAACAGAACTAGTT-TTCTAT------------ATATTGATAA------GATGT-TGA-C----GCAAACAACAAGTTTAGGTATG-AATACTAAGACAA--TATATCAGTACATCAATGAAA------AA---A----AGAAA-A
gi|18 : aAACACAAGG--TCAAGGTCAT--ACAGAAATAGTT-T-CTAT------------ATATTGATAA--TG--AATGTATGA-CT--GAC-AA-A--AAGTTTAGATATG-GATAT--AGA-AG--TATAC---TACAT-AA-GAAAC----AAA---A----GAAAA-Aa
gi|2 : aAACACAAGG--TCATGGTCAT--ACAGAAATAGTT-T-CTAT------------ATATTGATAA--TG--AATGTATGA-CT--GACAAA-A--AAGTTTAGGTATG-GACAT--AGA-AA--AATAC---TACAT-AA-GAAA-----GAA---A----AAAAA-AT-T-AAC-AAGTT--G-GTTCT--GTACT-TGATTCAT--ATACTAG-TG-TGAAAG-A-TTTT----AAA-A--AA----TTAAACAAA-TCTATTAGT--AGACAAAATA---TAT----TCAT----------GTACAATTC-TGAATA-TTG-CAA--CATTTTG----T-TTACAAC-TA-AGATTA---TTG------T-CACC-----ATACAA------AATAATTTCTAAAGATAAAGGTACTATTGTAGTTGTAGATTTTTAAAACTTTGTATCAGTATTTGTCTTTGTGTA-CAATATTTTGGACACTTCAGAAAAAAGTGAAGTGTGGTTTCAAGACTATTCT-GACAAAACTCACAATCAGGATTTTCTCTAAGAAAGTCCTTAAATAAA-TCAGCA-TTAAGATTA--CTA---GCTTTATTTCGCAATTGACAATGC-A---ATATATTAGC-TTTTCGATTG-CC---ATAGTTAGAATAAATTTTA-GG-----------TT-TTATGGAATAT-ATACTTTTAATGGC-ACGCTT----G-AAAGATA-CTA-GT-GTAGGAAGACTTCGAATAT--TCAA-G-GGTAG-GTCATTCCACAATT-TTATA-GTCGAAGGGATAAAGC-TATTCA-A-TATGTAT-AAGTACTAA
gi|20 : CAAGG--TCAAGATCAT--ACAGAAA--GTT-T-CTAT------------ATTTTGATAA--TG--AATGTATGA-CT--GACAAA-A--AAGTTTAGGTATG-GATAT--AGA-AA--Tt
gi|21 : GGTTTCAAGACTATTCT-GACAAAACTAACGATCAGGATTTTCTCTAAG--------------AA-TCAGCA-TTAA
gi|22 : -GT-GTAGGAAGACTTCGAATAC--TCAA-G-GGTTG-GTCATTCCATAATT-TTATA-GTCGta
gi|23 : AACACAAGG--TCATGGTCAT--ACAGAAATAGTT-T-CTAT------------ATATTGATAA--TG--AA
gi|25 : AACATATGA--TCAAGGTCAT--ACAGAAATAGTT-T-C
gi|3 : taC---ATATTCAAAA--ATCTTTA-CA-----------TTGTCTTTGAATTTTAGATTTTTTATG---ATG---T-AAG-A--------------GTTGGGAGATCTCTGATAT--GAAT-A-GGTAG-GTCATTCCATAGTTATTATTTGCTGAAGGTATAAAGC-TGTTCATA-TATG-ATGAAGTTTTAA
gi|4 : tcttttgtaTTTCAAGACTATTAT-GACAAAACTCACAATTAGGATTTTCTCTCAGAAAGTGCTTAAATAAA-TCAGCA-TGAAGATTATACTG---GCTTTATTTCGCAATTGACAGTGC-A---ATATATTTGC-TTTTCGATTG-TC---ATATTTAAAACAAGTTTTA-GG-----------TT-TAATGGAATAT-ATATTTTTAATGGG-ACGCTTTCAAGAAAAGATA-CTA-GT-GT-GAAAACCTTCGAATATACTCCA-G-GGTAG-CTCATgttgaggaggaatacatttaagaccatcattgtttctaagtggatatgagttttgtggagggatgcaaggtatcaaattggggagctatgccataagctatcttgtaaaataagataagtttatgaacttttcttctagtggttaaagtatcccagcctaattcattatacagtgctgatctttaagaatttattttcattcccgtggttattctcgcagcagtacacctgaacattctctagtaaattggcttccctttctgtacaattgtcccacattgaatttgcatactcgagaattggacgaatgaaagaaaagtaatttttcattaaagattgaagttattgtattttaaaatgtgataactttcataagttagct
gi|5 : AGGATTT-CTCTTCAGAAGTGCTTAAATAAAATCAGCA-TGAAGATTA--TTACTTGCTTTATTTCGCAATTGACAGTGC-A---ATATATTTGCCTTTTCGATTG-TC---ATATTTAAAACAAGTTTTA-GG-----------TT-TAATGGAATAT-ATATTTTAAATGG--ACGCTTTCAAG-AAAGATA-CTA-GT-G--AGAAAACTTCGAATATACTCAACGCGATAGCGTCATaataacgaagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaatggtcagtcaaaatataaaaaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttagtccttgcaaatatggggagctttttaaatcaacacaaagtttatgaattttccttcttattgctaaggtatccatccaagttcatataaagtgtcgatcgttgttatattcttaagacatttaatcgt
gi|6 : tATGTAAGA-CT--GACAAA-A--AAGTTTAGGTATG-GATAT--AGA-TA--TATAC---TACAC-AA-GGGA------------------AAA-GT-A-AAC-AAGTT--G-GTTCT--GTACT-TGGTAAA--------AG-AA-TGAAAG-A-TTTT----ATG-A--AA----TTAGATCAA-TCTATTTGT--AGACAAAATA---TAT----TCAT----------GCACAATTA-TGAAAA-TTG-CAA--CCTTTTG----G-TTATAAC-TG-AGATTA---TTT------T-CACC-----ATACAA------AATAAGTT------ATAAAGGTA--ATTGTAATTGTCGATTGTTCAAACTTTTTATCAGTATTTGTCTTTGTGTA-CAATATTTTGGACACTTAAGAAAGACGTGAAGTGTGGTTTaatacgaagttgtagcgttatgttttatatttttgactgaccattaatctaatggctcagtcaaaatataaaaaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttagtccttgcaaatattggggagcttttgtaaatcaacacaagtttatgaattttccttcttattgctaaggtatcccatccaagttcattataaagtgtcgatcttgttatattcttaagacatttaatcgt
gi|7 : gAAAA-ATGT-AAC-AAGTT--G-GTTCT--GTACT-TGATACAT--GTACAAG-TG-TGAAAA-A-TTTG----AAA-ACAAA----TTAAACAAA-TCTATTTGT--AGACAAAATA---TAT----TCAT----------GTACAATTC-TGAAAA-TTG-CAA--CATTTTG----T-TTATAAC-TA-AGATTA---TTG------T-CACC-----ATACAA------AATAAGTTCTAAAGATAAAGGTA--ATTGTAATTGTAGATTGTTAAAACTTTGTATCAGTATTTGTCTTTGTGTA-CAATATTTTGGACACTTCAGAAAAAAGTGACGTGTG
gi|8 : ccccctctttttcaaaggggggtatA-AT-GTGGGGAGATTTCTGATAT--GGAT-G-GACAG-GTCATTCCAGAGTT-TCATT-GTCGAAAGTATA
gi|9 : taAACACAAGG--TCA-GGTCAT--ACAGAAATAGTTCT-CTAT------------ATATTGATAA--TG--AATGTA-GA-CT--GACAAA-A--GGTCTTAGGTATG-AATAT--AGA-AGACTATAC---TACATTAA-GAAACAAAAGAA---A----AAAAA-AT-T-AAC-TAGTC--GCGTTCT--GTACT-TGATTCATGTATACTAG-TG-TGAAAG-G-TTTA----AAA-A--AA----TTAAACAAA-TCTATTTGT--A-ACAAAATA---TAT----TC-T----------GTACAATTC-TGAAAA--TG-CGA--CATTTTG----T-TTATAAC-TA-AGATTA---TTtgatgaagtcctaccgcaaagaagaattaattcaagaccgtcatagtttcgtagtcgttgggaattctacggaggaatgcatatgatatcaaaaataaaaaccaaaaaaggcagtactttacttttggtaaacagaaagtttgtgaactttttttctatttgattagctaggctcccagaagaatccattctcattccagtgattactcttg
blockSeqs : GG T GA C T GGT CT . . . C AC . TA C AC CAG C T CAAAAGAAA T TC . T C . . GT . G . G . A CA ATTA . . . AAAT . T . . . . . . . . . . . . T G CT A TT G . . T G A T TA CTT AATT C . AAT A TA A T TTTTAAATACT G A G A T C T TCAA A . . . A C AC C C C A TT T C T G T G T
blockSeqs : . A . . . GGT CT . . . . . . . . . . T . CGAAAGGA . GT . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T G . T GT G . . A C . . . . GC . . . G TT C . . . A G A . G C TCAA . . . . A A AC . . . . G . C T . . .
blockSeqs : . T . . . . . . . . . . . . . . . . . CAAAA . C . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . G TT G . . A G . . . . A . . . G TA A . . . T T T . A C GAA . . . . A A . . . . . A . . . .
blockSeqs : . A . . . . . . . . . . . . . . . . . GAAA . T . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G GT G G . . . . A . . . T CA T . . . C G A . T G TAA . . . . T A . . . . . A
blockSeqs : . T . . . . . . . . . . . . . . . . . AAA . A . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . T CA G . . . A G A . A . . . . . . G A . . . . . T
blockSeqs : . A . . . . . . . . . . . . . . . . . . . T . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . G . . . A . . . A . . . . . . . C . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . A
blockSeqs : . .
blockSeqCons : ************ ** ** CGAAAGA********* T** T** ** **** ** *** ********** ** **** *** ****** ***** ****** NT A**** TA C*
originalCons : AACACAAGG--TCANGGTCAT--ACAGAAATAGTT-T-CTAT------------ATATTGATAA--TG--AATGTATGA-CT--GACAAA-A--AAGTTTAGGTATG-GATAT--AGA-AA--TATAC---TACAT-AA-GAAAC----GAA---A----AAAAA-AT-T-AAC-AAGTC--G-GTTCT--GTACT-TGATACAT--ATACTAG-TG-TGAAAG-A-TTTA----AAA-A--AA----TTAAACAAA-TCTATTTGT--AGACAAAATA---TAT----TCAT----------GTACAATTC-TGAAAA-TTG-CAA--CATTTTG----T-TTATAAC-TA-AGATTA---TTG------T-CACC-----ATACAA------AATAAGTTCTAAAGATAAAGGTA--ATTGTAATTGTAGATTGTTAAAACTTTTTATCAGTATTTGTCTTTGTGTA-CAATATTTTGGACACTTCAGAAAAAAGTGAAGTGTGGTTTCAAGACTATTCT-GACAAAACTCACAATCAGGATTTTCTCTAAGAAAGTGCTTAAATAAA-TCAGCA-TTAAGATTA--CTA---GCTTTATTTCGCAATTGACAATGC-A---ATATATTTGC-TTTTCGATTG-CC---ATANTTAAAATAANTTTTA-GG-----------TT-TAATGGAATAT-ATATTTTTNATGGC-ACGCTTT-AAG-AAAGATA-CTA-GT-GTAGGAAGACTTCGAATAT--TCAA-G-GGTAG-GTCATTCCATAATT-TTATN-GTCGAAGGTATAAAGC-TATTCATA-TATGCATGAAGTNCTAA
finalCons : AACACAAGG--TCANGGTCAT--ACAGAAATAGTT-T-CTAT------------ATATTGATAA--TG--AATGTATGA-CT--GACAAA-A--AAGTTTAGGTATG-GATAT--AGA-AA--TATAC---TACAT-AA-GAAACGAAAGA---------AAAAA-ATT--AAC-AAGTT--G-GTTCT--GTACT-TGATACAT--ATACTAG-TG-TGAAAG-A-TTTA----AAA-A--AA----TTAAACAAA-TCTATTTGT--AGACAAAATA---TAT----TCAT----------GTACAATTC-TGAAAA-TTG-CAA--CATTTTG----T-TTATAAC-TA-AGATTA---TTG------T-CACC-----ATACAA------AATAAGTTCTAAAGATAAAGGTA--ATTGTAATTGTAGATTGTTAAAACTTTNTATCAGTATTTGTCTTTGTGTA-CAATATTTTGGACACTTCAGAAAAAAGTGAAGTGTGGTTTCAAGACTATTCT-GACAAAACTCACAATCAGGATTTTCTCTAAGAAAGTGCTTAAATAAA-TCAGCA-TTAAGATTA--CTA---GCTTTATTTCGCAATTGACAATGCA----ATATATTTGC-TTTTCGATTG-CC---ATANTTAAAATAANTTTTA-GG-----------TT-TAATGGAATAT-ATATTTTTNATGGC-ACGCTTT-AAG-AAAGATA-CTA-GT-GTAGGAAGACTTCGAATAT--TCAA-G-GGTAG-GTCATTCCATAATT-TTATN-GTCGAAGGTATAAAGC-TATTCATA-TATGCATGAAGTNCTAA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CTATTTTGTAAAATAAGATAAGTTTTTGAACTTTTCTTCTAGTGGCTAAAGTATTCCAGCCTAATTCATTATACAGTGCTGATCTAGAAGAAGTTATTCTCATTCCCGTGATTATTCTTGCAGCAGTAACCTGACCATTCTCTAGTAAATTGGCTTCCCTTTCTGTACAATTGTCCCACACTGAATTTGCATACTCGAGAATTGGACGAATAACAGAAAAA
Unaligned ( gi|15 ): ACTGGTCTTAAAGAAATTCCTCTAACATCTGTGATAATTCTTGCTGCAGAACCTTGAATGTTCTGTATCAGTTGGCTGGACTCTTTTCTGTACAATTTTCCCGTACTAAATTTTCATATTCCAGTAAAAGAAGAATAAGAGAAAAATAGGCTTTTATCAAAGCTT
Unaligned ( gi|19 ): CAATTGCAAGAAGAAATAGCCCCCTCTTATTCCAAAGGGGGGCATAAAAATCTAAAATCAAATAAATGGAATGATTATAATCTGTATGAGAGTTATGTACAAGT
Unaligned ( gi|24 ): CCCTCTTTTTCAAAGGGGGGCATAACAAAGAACAAG
Alignments
lowQualScore : 333333333333 11 111 1 11 2222222 1111 1111 2222222222 1111 111111 22222 222222 11 1 1 111 11111 111 22222222222 11 2222 11 1 1 1 1 1
lowQualScore : 66 5 66 8 4 888888888888 22 66 0 4 66 4 66 4 66 4 66 000 1 5 11 66 3333333 6 66 5 5 5 5 0000 5 66 9999 4 66 888 0000 1111111111 5 5 5 66 0000 5 5 5 888 666666 5 00000 333333 5 5 0 11 0 0 1 8 2 0 0 0 0 6 2 6 6 99 111 0 88888 6 6 000 1 77 1 5 77777777777 5 5 4 5 5 1 22 0 9999 5 5 4 4 6 1 33 0 5 5 6 77 0 0 0 2 3 0 2 2 1
lowQualScore : .. . .. . . ............ .. .. . . .. . .. . .. . .. ... . . .. .. ....... . .. . . . . .... . .. .... . .. ... .... .......... . . . .. .... . . . ... ...... . ..... ...... . . . .. . . . . . . . . . . . . . .. ... . ..... . . ... . .. . . ........... . . . . . . .. . .... . . . . . . .. . . . . .. . . . . . . . . .
lowQualScore : 99 9 99 0 0 333333333333 22 11 8 4 11 4 11 4 11 4 99 000 4 7 99 44 0000000 7 99 0 0 0 0 6666 0 11 4444 4 99 888 6666 9999999999 0 0 0 99 6666 0 0 0 888 444444 7 00000 000000 6 0 8 00 8 8 4 8 5 0 0 8 8 0 5 7 7 22 777 3 55555 7 7 000 0 44 0 7 11111111111 7 1 3 4 7 0 33 7 4444 7 7 4 4 3 8 88 0 0 0 7 77 6 8 0 5 2 0 0 0 0
consensus : AACACAAGG--TCANGGTCAT--ACAGAAATAGTT-T-CTAT------------ATATTGATAA--TG--AATGTATGA-CT--GACAAA-A--AAGTTTAGGTATG-GATAT--AGA-AA--TATAC---TACAT-AA-GAAACGAAA-GAAAAAAA---T-T-AACAAGTTG-GTTCTGTACTTGATACAT--ATACTAG-TG-TGAAAG-A-TTTA----AAA-A--AA----TTAAACAAA-TCTATTTGT--AGACAAAATA---TAT----TCAT----------GTACAATTC-TGAAAA-TTG-CAA--CATTTTG----T-TTATAAC-TA-AGATTA---TTG------T-CACC-----ATACAA------AATAAGTTCTAAAGATAAAGGTA--ATTGTAATTGTAGATTGTTAAAACTTTNTATCAGTATTTGTCTTTGTGTA-CAATATTTTGGACACTTCAGAAAAAAGTGAAGTGTGGTTTCAAGACTATTCT-GACAAAACTCACAATCAGGATTTTCTCTAAGAAAGTGCTTAAATAAA-TCAGCA-TTAAGATTA--CTA---GCTTTATTTCGCAATTGACAATGC-A---ATATATTTGC-TTTTCGATTG-CC---ATANTTAAAATAANTTTTA-GG-----------TT-TAATGGAATAT-ATATTTTTNATGGC-ACGCTTT-AAG-AAAGATA-CTA-GT-GTAGGAAGACTTCGAATAT--TCAA-G-GGTAG-GTCATTCCATAATT-TTATN-GTCGAAGGTATAAAGC-TATTCATA-TATGCATGAAGTNCTAA
Reference ( family-824 ) : AACACAAGG--TCANGGTCAT--ACAGAAATAGTT-T-CTAT------------ATATTGATAA--TG--AATGTATGA-CT--GACAAA-A--AAGTTTAGGTATG-GATAT--AGA-AA--TATAC---TACAT-AA-GAAACGAAA-GAAAAAAA---T-T-AACAAGTTG-GTTCTGTACTTGATACAT--ATACTAG-TG-TGAAAG-A-TTTA----AAA-A--AA----TTAAACAAA-TCTATTTGT--AGACAAAATA---TAT----TCAT----------GTACAATTC-TGAAAA-TTG-CAA--CATTTTG----T-TTATAAC-TA-AGATTA---TTG------T-CACC-----ATACAA------AATAAGTTCTAAAGATAAAGGTA--ATTGTAATTGTAGATTGTTAAAACTTTNTATCAGTATTTGTCTTTGTGTA-CAATATTTTGGACACTTCAGAAAAAAGTGAAGTGTGGTTTCAAGACTATTCT-GACAAAACTCACAATCAGGATTTTCTCTAAGAAAGTGCTTAAATAAA-TCAGCA-TTAAGATTA--CTA---GCTTTATTTCGCAATTGACAATGC-A---ATATATTTGC-TTTTCGATTG-CC---ATANTTAAAATAANTTTTA-GG-----------TT-TAATGGAATAT-ATATTTTTNATGGC-ACGCTTT-AAG-AAAGATA-CTA-GT-GTAGGAAGACTTCGAATAT--TCAA-G-GGTAG-GTCATTCCATAATT-TTATN-GTCGAAGGTATAAAGC-TATTCATA-TATGCATGAAGTNCTAA
gi|1 : CAAGG--TCATGGTCAT--ACAGAAATAGTTGC-CTATTAAAAACACCAGAGATTGAAAA--TGGAAATGTATGAACTTCGACAAC-A--AAGTTCAGGTATGAAATAT--GGA-
gi|1 : aagcAT--AGAGTAGCTA-TAAAAGTA-TTTAGTAAAAA-A--AA----TTAAACAAAGTCTggcgcgactgtagaatttataggccctgatagagcgatagagtagctataaaagtatttagtaaaaaaaattaaacaaagtctgggttcctggtactgtgattcaggataggaatggtgggggctgggggaatatcagtggtgaaagagtttaaaaaaaattattaaacaaatctatttgtgtagacaagagagtttattcatcgttgaatgggtacaattctgaaaaattggcaaaacattttggtattattatcacctacagattagggttggaggagtacaccgctagatattatcatccaataagttctagaataaggtaattgtagtgtagattattaaaacttttatcatatttgtctttgtgtaacaatactttggaccattcagaaaaaagtgaagtgtggtttcaagactattctggacaaaactcacaatcaggatttctctagaaaaggtcttaaataaatcagcattaagatactagcttttttcgcaattgacatggcaaatatattagtcttcgattgtccatagttaatatacttttaggtttattgaatttatactttttatggcaacgcttgaaagatacctacgtggtaggaagcttgaatattcaaggggtaggtcacatcacaattttatagtcgaagggataagctattcatataggagttgttttcactaagggaattttaattttagagtatcctgttttttaaagataagaagttatgaggcaaagtacatggccagaagtacagtcctcaaataatggggacttatccctgaactattttgtagaacatcacaatttatgaatttttctttcttattgctaggtatcccatccaatgttcattaataaaaggtccgatcttgatggattttacccttaacctgaaaatttatcgtctgctgttatttgaaacatcttcagttaaattagcaatctctttctgtacaagttatccaaactttgaatattcaaatatggtcgacataagaaaagataaatttatcaatgaatcccttttaagttgataactttaacatcttagccc
gi|1 : aagccaaggtcatggtcatacagaaatagttgcctattaaaaacaccagagattgaaaatggaaatgtatgaacttcgacaacaaagttcaggtatgaaatatggaggcgcgactgtagaatttataggccctgatagagcg--ATATCAG-TGGTGAAAG-AGTTTA----AAA-A--AAATTATTAAACAAA-TCTATTTGTGTAGACAAGAGAGTTTAT----TCATCGTTGAATGGGTACAATTC-TGAAAAATTGGCAAAACATTTTGGTATTATTATCACCTACAGATTAGGGTTGGAGGAGTACACCGCTAGATATTATCATCCAATAAGTTCTAGA-ATAA-GGTA--ATTGTAGT-GTAGATTATTAAAACTTT-TATCA-TATTTGTCTTTGTGTAACAATACTTTGGACCATTCAGAAAAAAGTGAAGTGTGGTTTCAAGACTATTCTGGACAAAACTCACAATCAGGA-TTTCTCTAGAAAAGGTCTTAAATAAA-TCAGCA-TTAAGA-TA--CTA---GCTTT-TTTCGCAATTGACATGGCAA---ATATATTAG--TCTTCGATTGTCC---ATAGTTAATAT-ACTTTTA-GG-----------TT-T-ATTGAATTT-ATACTTTTTATGGCAACGCTT----G-AAAGATACCTACGTGGTAGGAAG-CTT-GAATAT--TCAAGG-GGTAG-GTCACATCACAATT-TTATA-GTCGAAGGGAT-AAGC-TATTCATA-TAgggttcctggtactgtgattcaggataggaatggtgggggctgggggaatatcagtggtgaaagagtttaaaaaaaattattaaacaaatctatttgtgtagacaagagagtttattcatcgttgaatgggtacaattctgaaaaattggcaaaacattttggtattattatcacctacagattagggttggaggagtacaccgctagatattatcatccaataagttctagaataaggtaattgtagtgtagattattaaaacttttatcatatttgtctttgtgtaacaatactttggaccattcagaaaaaagtgaagtgtggtttcaagactattctggacaaaactcacaatcaggatttctctagaaaaggtcttaaataaatcagcattaagatactagcttttttcgcaattgacatggcaaatatattagtcttcgattgtccatagttaatatacttttaggtttattgaatttatactttttatggcaacgcttgaaagatacctacgtggtaggaagcttgaatattcaaggggtaggtcacatcacaattttatagtcgaagggataagctattcatataggagttgttttcactaagggaattttaattttagagtatcctgttttttaaagataagaagttatgaggcaaagtacatggccagaagtacagtcctcaaataatggggacttatccctgaactattttgtagaacatcacaatttatgaatttttctttcttattgctaggtatcccatccaatgttcattaataaaaggtccgatcttgatggattttacccttaacctgaaaatttatcgtctgctgttatttgaaacatcttcagttaaattagcaatctctttctgtacaagttatccaaactttgaatattcaaatatggtcgacataagaaaagataaatttatcaatgaatcccttttaagttgataactttaacatcttagccc
gi|10 : aagccaaggtcatggtcatacagaaatagttgcctattaaaaacaccagagattgaaaatggaaatgtatgaacttcgacaacaaagttcaggtatgaaatatggaggcgcgactgtagaatttataggccctgatagagcgatagagtagctataaaagtatttagtaaaaaaaattaaacaaagtctgggttcctggtactgtgattcaggataggaatggtgggggctgggggaTAAGTAAATGATTAAATAAA-TC-GCATTTAACATTA--CTA---GCAGCATTTCGCAATTGACAATGC-GC--GTATA-TTGC-ATTACGA-TG-CCAATATAATTATGATAAATCGTATGG-----------TT-AAAT-GAAT------TTTTTCATTGT-ATGATTG-AAG-AATGATA-ATG-AT----AGAGGCCTCTAAATGT--CCAA-A-GGTAG-GCCATTCAATGACC-TTATG-GTTGGATATATAAAGCTTATT-ATAGTATTCATAAAggagttgttttcactaagggaattttaattttagagtatcctgttttttaaagataagaagttatgaggcaaagtacatggccagaagtacagtcctcaaataatggggacttatccctgaactattttgtagaacatcacaatttatgaatttttctttcttattgctaggtatcccatccaatgttcattaataaaaggtccgatcttgatggattttacccttaacctgaaaatttatcgtctgctgttatttgaaacatcttcagttaaattagcaatctctttctgtacaagttatccaaactttgaatattcaaatatggtcgacataagaaaagataaatttatcaatgaatcccttttaagttgataactttaacatcttagccc
gi|11 : T-T-CTATGGT---------AAATTTATAGCTTG--A-TGTATGA-CT--GGCAAA-A--AAGTTTAGGTATG-GATAT--AGA-AA--TATAC---TACAT-AG-GAAACGAAA-GGAAAAAAATAT-C-AACAAGTTG-GTTCTGTACTTGATACAT--ATACTAG-TG-TGAAAG-A-TTAA----AAAAA--AA----TTAAACAAA-TCTATTTGT--AGACAAAATA---TAT----TCAT----------GTACACTTC-TGAAAA-TTG-CAA--CATTTTG----T-TTATAAC-TA-AGATTA---TTG------T-CAtgaagtcgttttctctaat
gi|12 : cagtttccagT-T-CTATGGT---------AAATTTATAGCTTG--A-TGTATGA-CT--GGCAAA-A--AAGTTTAGGTATG-GATAT--AGA-AA--TATAC---TACAT-AG-GAAACGAAAGGAAAAAAA---T-TCAACAAGTTG-GTTCTGTACTTGATACAT--ATACTAG-TG-TGAAAG-A--TTA----AAA-A--AA----TTAAACAAA-TCTATTTGT--AGACAAAATA---TAT----TCAT----------GTACACTTCTTGAAAA-TTG-CAA--CATTTTG----T-TTATAAC-TA-AGATTA---TTG------T-CAC
gi|14 : cagtttccag--AA----TCTAACGAG-TTTACTTGT--AGACAAGATA---TATAAATTCAT----------GTACAATTC-TGAAAA-TTG-CAA--CATTTGG----T-T----AT-TT-TGGTTA---TTG------T-TATC-----ATTCAA------AATGAGTTC-AAAGATAAAGGTA--ATGGTAATTG-AAAATATAAAAACTTCTTGTC
gi|16 : actcgtacattacaaaggttggttatgcgtctgagaatgaagttTTA--CTA---GCTTTATTTCGCAATTGACCATGC-AATTATATATTTGC-TATTCGTTTG-CC---ATAGTTAAGATTACTTTTA-TGTTTTAAATACTTT-TAATGGAATAT-ATATTTTTGATGAC-AGGCTT----G-AAAGATA-CTA-GT-GTAGGAAGACTTg
gi|17 : AACACAAGGGGTCATGGGCATGAACAGAACTAGTT-TTCTAT------------ATATTGATAA------GATGT-TGA-C----GCAAACAACAAGTTTAGGTATG-AATACTAAGACAA--TATATCAGTACATCAATGAAA-AAAA-GAAAAA
gi|18 : aAACACAAGG--TCAAGGTCAT--ACAGAAATAGTT-T-CTAT------------ATATTGATAA--TG--AATGTATGA-CT--GAC-AA-A--AAGTTTAGATATG-GATAT--AGA-AG--TATAC---TACAT-AA-GAAACAAAA-GAAAAA
gi|2 : aAACACAAGG--TCATGGTCAT--ACAGAAATAGTT-T-CTAT------------ATATTGATAA--TG--AATGTATGA-CT--GACAAA-A--AAGTTTAGGTATG-GACAT--AGA-AA--AATAC---TACAT-AA-GAAA-GAAA---AAAAAA---T-T-AACAAGTTG-GTTCTGTACTTGATTCAT--ATACTAG-TG-TGAAAG-A-TTTT----AAA-A--AA----TTAAACAAA-TCTATTAGT--AGACAAAATA---TAT----TCAT----------GTACAATTC-TGAATA-TTG-CAA--CATTTTG----T-TTACAAC-TA-AGATTA---TTG------T-CACC-----ATACAA------AATAATTTCTAAAGATAAAGGTACTATTGTAGTTGTAGATTTTTAAAACTTTGTATCAGTATTTGTCTTTGTGTA-CAATATTTTGGACACTTCAGAAAAAAGTGAAGTGTGGTTTCAAGACTATTCT-GACAAAACTCACAATCAGGATTTTCTCTAAGAAAGTCCTTAAATAAA-TCAGCA-TTAAGATTA--CTA---GCTTTATTTCGCAATTGACAATGC-A---ATATATTAGC-TTTTCGATTG-CC---ATAGTTAGAATAAATTTTA-GG-----------TT-TTATGGAATAT-ATACTTTTAATGGC-ACGCTT----G-AAAGATA-CTA-GT-GTAGGAAGACTTCGAATAT--TCAA-G-GGTAG-GTCATTCCACAATT-TTATA-GTCGAAGGGATAAAGC-TATTCA-A-TATGTAT-AAGTACTAA
gi|20 : CAAGG--TCAAGATCAT--ACAGAAA--GTT-T-CTAT------------ATTTTGATAA--TG--AATGTATGA-CT--GACAAA-A--AAGTTTAGGTATG-GATAT--AGA-AA--Tt
gi|21 : GGTTTCAAGACTATTCT-GACAAAACTAACGATCAGGATTTTCTCTAAG--------------AA-TCAGCA-TTAA
gi|22 : -GT-GTAGGAAGACTTCGAATAC--TCAA-G-GGTTG-GTCATTCCATAATT-TTATA-GTCGta
gi|23 : AACACAAGG--TCATGGTCAT--ACAGAAATAGTT-T-CTAT------------ATATTGATAA--TG--AA
gi|25 : AACATATGA--TCAAGGTCAT--ACAGAAATAGTT-T-C
gi|3 : taC---ATATTCAAAA--ATCTTTA-CA-----------TTGTCTTTGAATTTTAGATTTTTTATG---ATG---T-AAG-A--------------GTTGGGAGATCTCTGATAT--GAAT-A-GGTAG-GTCATTCCATAGTTATTATTTGCTGAAGGTATAAAGC-TGTTCATA-TATG-ATGAAGTTTTAA
gi|4 : tcttttgtaTTTCAAGACTATTAT-GACAAAACTCACAATTAGGATTTTCTCTCAGAAAGTGCTTAAATAAA-TCAGCA-TGAAGATTATACTG---GCTTTATTTCGCAATTGACAGTGC-A---ATATATTTGC-TTTTCGATTG-TC---ATATTTAAAACAAGTTTTA-GG-----------TT-TAATGGAATAT-ATATTTTTAATGGG-ACGCTTTCAAGAAAAGATA-CTA-GT-GT-GAAAACCTTCGAATATACTCCA-G-GGTAG-CTCATgttgaggaggaatacatttaagaccatcattgtttctaagtggatatgagttttgtggagggatgcaaggtatcaaattggggagctatgccataagctatcttgtaaaataagataagtttatgaacttttcttctagtggttaaagtatcccagcctaattcattatacagtgctgatctttaagaatttattttcattcccgtggttattctcgcagcagtacacctgaacattctctagtaaattggcttccctttctgtacaattgtcccacattgaatttgcatactcgagaattggacgaatgaaagaaaagtaatttttcattaaagattgaagttattgtattttaaaatgtgataactttcataagttagct
gi|5 : AGGATTT-CTCTTCAGAAGTGCTTAAATAAAATCAGCA-TGAAGATTA--TTACTTGCTTTATTTCGCAATTGACAGTGC-A---ATATATTTGCCTTTTCGATTG-TC---ATATTTAAAACAAGTTTTA-GG-----------TT-TAATGGAATAT-ATATTTTAAATGG--ACGCTTTCAAG-AAAGATA-CTA-GT-G--AGAAAACTTCGAATATACTCAACGCGATAGCGTCATaataacgaagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaatggtcagtcaaaatataaaaaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttagtccttgcaaatatggggagctttttaaatcaacacaaagtttatgaattttccttcttattgctaaggtatccatccaagttcatataaagtgtcgatcgttgttatattcttaagacatttaatcgt
gi|6 : tATGTAAGA-CT--GACAAA-A--AAGTTTAGGTATG-GATAT--AGA-TA--TATAC---TACAC-AA-GGGA----------AAAG---T-A-AACAAGTTG-GTTCTGTACTTGGTAAA--------AG-AA-TGAAAG-A-TTTT----ATG-A--AA----TTAGATCAA-TCTATTTGT--AGACAAAATA---TAT----TCAT----------GCACAATTA-TGAAAA-TTG-CAA--CCTTTTG----G-TTATAAC-TG-AGATTA---TTT------T-CACC-----ATACAA------AATAAGTT------ATAAAGGTA--ATTGTAATTGTCGATTGTTCAAACTTTTTATCAGTATTTGTCTTTGTGTA-CAATATTTTGGACACTTAAGAAAGACGTGAAGTGTGGTTTaatacgaagttgtagcgttatgttttatatttttgactgaccattaatctaatggctcagtcaaaatataaaaaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttagtccttgcaaatattggggagcttttgtaaatcaacacaagtttatgaattttccttcttattgctaaggtatcccatccaagttcattataaagtgtcgatcttgttatattcttaagacatttaatcgt
gi|7 : gAAAAA---TGT-AACAAGTTG-GTTCTGTACTTGATACAT--GTACAAG-TG-TGAAAA-A-TTTG----AAA-ACAAA----TTAAACAAA-TCTATTTGT--AGACAAAATA---TAT----TCAT----------GTACAATTC-TGAAAA-TTG-CAA--CATTTTG----T-TTATAAC-TA-AGATTA---TTG------T-CACC-----ATACAA------AATAAGTTCTAAAGATAAAGGTA--ATTGTAATTGTAGATTGTTAAAACTTTGTATCAGTATTTGTCTTTGTGTA-CAATATTTTGGACACTTCAGAAAAAAGTGACGTGTG
gi|8 : ccccctctttttcaaaggggggtatA-AT-GTGGGGAGATTTCTGATAT--GGAT-G-GACAG-GTCATTCCAGAGTT-TCATT-GTCGAAAGTATA
gi|9 : taAACACAAGG--TCA-GGTCAT--ACAGAAATAGTTCT-CTAT------------ATATTGATAA--TG--AATGTA-GA-CT--GACAAA-A--GGTCTTAGGTATG-AATAT--AGA-AGACTATAC---TACATTAA-GAAACAAAA-GAAAAAAAAA-T-T-AACTAGTCGCGTTCTGTACTTGATTCATGTATACTAG-TG-TGAAAG-G-TTTA----AAA-A--AA----TTAAACAAA-TCTATTTGT--A-ACAAAATA---TAT----TC-T----------GTACAATTC-TGAAAA--TG-CGA--CATTTTG----T-TTATAAC-TA-AGATTA---TTtgatgaagtcctaccgcaaagaagaattaattcaagaccgtcatagtttcgtagtcgttgggaattctacggaggaatgcatatgatatcaaaaataaaaaccaaaaaaggcagtactttacttttggtaaacagaaagtttgtgaactttttttctatttgattagctaggctcccagaagaatccattctcattccagtgattactcttg
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CTATTTTGTAAAATAAGATAAGTTTTTGAACTTTTCTTCTAGTGGCTAAAGTATTCCAGCCTAATTCATTATACAGTGCTGATCTAGAAGAAGTTATTCTCATTCCCGTGATTATTCTTGCAGCAGTAACCTGACCATTCTCTAGTAAATTGGCTTCCCTTTCTGTACAATTGTCCCACACTGAATTTGCATACTCGAGAATTGGACGAATAACAGAAAAA
Unaligned ( gi|15 ): ACTGGTCTTAAAGAAATTCCTCTAACATCTGTGATAATTCTTGCTGCAGAACCTTGAATGTTCTGTATCAGTTGGCTGGACTCTTTTCTGTACAATTTTCCCGTACTAAATTTTCATATTCCAGTAAAAGAAGAATAAGAGAAAAATAGGCTTTTATCAAAGCTT
Unaligned ( gi|19 ): CAATTGCAAGAAGAAATAGCCCCCTCTTATTCCAAAGGGGGGCATAAAAATCTAAAATCAAATAAATGGAATGATTATAATCTGTATGAGAGTTATGTACAAGT
Unaligned ( gi|24 ): CCCTCTTTTTCAAAGGGGGGCATAACAAAGAACAAG