lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1111111 11 7777777777 444444444 1 222222 11 3333333333 111 222 222 22222 1111 111 666666666666 111 11 11 111 11 11 22222222 2222222222 1111 2222222 111 1111 1 3333333333333 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 111 111 1111111111111111 33333 2222222222 1 11 1111111 11 1 8888888888888888888888888888888888888888888888888 111 22222222 555555555 1 1 1 11 111 1 1 333333 11 22222222222 22 11 11 1 1111111 1111 1111 3333333333333333 111 333333333 111 11 1 2222222 2222222 11111 3333333 8888888888888888888888 1 11 1111 22222222 22222 1 22
lowQualScore : 3 33 4444444 22 8 0000000000 8 8 8 3 000000000 8 7 1 000000 4 11 6 1111111111 0 111 8 888 8 6 222 8 8 00000 99 5555 8 6 6 6 6 1 99 6 333 2 555555555555 444 11 11 0 88 444 11 55 44444444 9999999999 99 6 5555 2222222 111 2222 0 0 2222222222222 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 8 3 8 6 99 000 99 111 000 99 3 6666666666666666 00000 2 2 777 6 5555555555 6 3 22 8 7777777 11 1 9999999999999999999999999999999999999999999999999 8 444 99999999 000000000 5 7 7 2 33 666 5 5 6 888888 8 8 11 66666666666 00 11 1 9 44 0 3 8 6 6 6 99 99 8888888 5 77 5 2222 5 5 99 6 5555 99 6 6 3 6 7 0000000000000000 6 111 888888888 111 6 55 5 99 6 2222222 6 1111111 66666 4444444 7777777777777777777777 8 3 66 2222 5 99999999 0 33333 8 5 0 3 11 8 6
lowQualScore : . .. ....... .. . .......... . . . . ......... . . . ...... . .. . .......... . ... . ... . . ... . . ..... .. .... . . . . . . .. . ... . ............ ... .. .. . .. ... .. .. ........ .......... .. . .... ....... ... .... . . ............. .......................................................................................................................... . . . . . .. ... .. ... ... .. . ................ ..... . . ... . .......... . . .. . ....... .. . ................................................. . ... ........ ......... . . . . .. ... . . . ...... . . .. ........... .. .. . . .. . . . . . . .. .. ....... . .. . .... . . .. . .... .. . . . . . ................ . ... ......... ... . .. . .. . ....... . ....... ..... ....... ...................... . . .. .... . ........ . ..... . . . . .. . .
lowQualScore : 2 88 4444444 66 0 0000000000 0 0 0 0 000000000 0 0 8 888888 6 00 0 4444444444 8 888 0 888 6 0 000 0 0 00000 88 4444 0 7 7 7 7 7 22 0 222 5 000000000000 000 00 00 8 88 000 00 88 22222222 2222222222 22 7 3333 0000000 888 0000 6 2 0000000000000 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2 0 2 0 7 22 222 22 777 222 22 5 7777777777777777 00000 5 5 222 7 3333333333 7 3 88 0 8888888 00 2 4444444444444444444444444444444444444444444444444 0 000 00000000 000000000 7 0 0 5 88 555 0 0 0 666666 0 0 00 44444444444 22 00 4 5 22 0 2 0 0 7 7 22 22 1111111 7 99 7 1111 7 7 22 7 2222 22 7 7 5 7 2 0000000000000000 7 222 888888888 777 7 88 2 22 7 7777777 7 7777777 77777 8888888 4444444444444444444444 0 2 44 0000 6 22222222 8 66666 0 6 0 2 00 8 0
consensus : TATTGATAATACAA--TTCA-AAT---TTATGATTT-TTAACAAC--TG---A-ATTGG-GGT-GAA-TGCAAACTGGG---------TAGAA-CAGCCGGAATGCTGTT---TACCGCAGT--TTCTTTTTATAGC--------TTTCGAGTGAAGAATATAGTGCTGGATTTTTA-TATTA-CAGAAAAGAAAAA-TGTTTTACCTTT---TGTCA-C-TTCGAAA-----TTTA-CTCTA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--NGCATAATA----GN--TTT-TTCA---CA--AA--TTCA-AAGAAA---TGTATA--GTTGC--AG--------TGA----------CG--TAATA-CGTCAN-T-GTAG---A---TTGTAGT--GACGCAGT--GATTCGGTCGTTGAGCGC-------CATA--TTGAAT--T-AT----------GTC--A-AA--AG---A----A--C--GACACTTCGTGT-------CACT-T--GAAG-T-----TAA-----AGGT--GT---AATTGTTG-AACGTTTG--ACCCAGT-GAANAGA-ACAG-AT--GATGG--ATTA--ATTC---TTTGA--GAA--TAGA---AGA-C-AC-TA-TTTGTTG-A--CGAGGTTTTCAA-GGC-AAG-----TGAG-CG-CCAGGAACGGGT-GACGAGCAAGGTGACAAG--GGANCTA----------G--------GGCAT---A----GG-AAT-----G---N-CGA-G---CGGC--------ATGGACGG---------TTGTCGGGGTAAGTTAAAGAATTTGAGAAGAATATTTGCTTTTANAT--CTGTANTGTTGTCATATTTACTT--NG--G-TTATT-ATGTGATTTT--AG---T---TT--TTTTTTT--CTTCAAGAATTTCGAAAA-GGGCATTG-TGTAACGTGAAGGGTNA-TTAGT-TTG-TAT--G--TTTGTA--A----AATG-CAGCAAA--CATTGGCTCTTT-ATGCTT----TT-TAC-A--CATA-TGCCGCTA--TC--AG-C-ATCTCAATTTTA-GTTTTTAAA----TT--ATA--TACGTATA-TC-T-ACCCTGAAATA------TATCC---TT-AAT--CCCC--AC-AT-----TATGATTT-CC-------TTC-----CCTG------TGAAAAATAA-TACCACAAAAGT-TT---CTTGCGCCA-TTTCAATCTGGTGATGCGGTTCTCGTCTGTG--TTATTGGATA-------TTTAATACGAAAAG-CTTTTCTAT-ATATTCATTACATGTTATCAAGGAAAATACATAGCATATGTAAATATT
Reference ( gi|1 ) : TATTGATAATACAA--TTCA-AAT---TTATAATTT-TTAACAA---TG---ACATTGG-GGT-GAA-TACAAACTGGG---------TAGAA-CAGCCGGTATGTTGTT---TAACGCGGT--TTCCTTTTATAGC--------TATCGAGTGAAGAATATAGTGCTGGATTTTTA-TGTTA-CAGAAAAGAAAAC-TGTTTTACCTCT---TGTCA-C-TTCGAAA-----TTTA-TTCTA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GTAA--AGCATAATA----GC--TTTGTTCA---CA--AA--TTCA-AAGAAA---TGTATA--GTTGC--AG--------TGA----------CG--TAATA-CGTCAG-T-GTAG---A---TTGTAGT--GACGCAGT--GATTCGGTCGTTTAGCGC-------CATA--TTGAATGCT-AT----------GTC--A-AA--AG---A----A--C--GACACTTCGTGT-------CACC-T--GAAG-T-----TAA-----AGGT--AT---AATTGTTG-AATGTTT---ACCCAGT-GAAGAGA-ACAG-AT--GATGG--ATTA--ATTC---TTTGA--GAA--TAGA---AGA-C-AC-TA-TTTGTTC-A--CGAGGTTTTCAA-GGCTAAG-----TGAG-CG-CCAGGAACAGGT-GACGAGCAAAGTGACAAG--GGATCTA----------G--------GGCA----A----GG-AAT-----G---T-CGA-G---CGGC--------ATGGACGG---------TTGTTGGGGTAATTTAAAGATTTTGAGAAGATTATTTGCTTTTAGAT--CTGGAATGTTCTCATATTGATTT--AT--G-TTATT-ATGTGATTTT--AG---T---TT--TTTTCTT--CTTCAAGAATTTAGAAAG-GGGCATTG-TGTAACGTGAAGGGTCA-TTAAT-TTG-TAT--G--TTTGTA--A----AATG-CAGCAAA--CATTGGCTCTTT-ATGCTT----TT-TAC-A--CATA-TGCCACGA--TC--AG-C-ATCTTAATTTTA-GTTTTTAAA----TT--ATA--TATGTATA-TC-T-ACCCTGAAATG------TATCC---TT-AAT--CCAC--AC-AT-----TCTGATTT-CC-------TTC-----CCTG------AGAAAAATAA-TAGCACAAAAGTGTC---CTTGCGCCA-TTTGAATCTGGTGATGCGGTTCTCGTCTGCG--TTATTGGATA-------TTTAATACAAAACA-CTTTTCTAT-ATATGCATTGAATGTTATTAAGAAAAATACATAGCATATGTAAATATT
gi|8 : TATTGATAATACAC--TTCA-------TTAT---TT-TCAACAAC--TG---A-ATTGG-GGT-GAA-TGCAAAATGGG---------TAGAA-CAGCCCGAATGTTGTT---TACCGCGGT--TTCTTTTTATGAC--------TTTCAGGTGAGGAATACAGTGCTGGATGTTTA-TATTA-CAGAAAAGAAAAAATGCTTTACCTTT---TGTCA-C-TTCGAAA-----TTTA-TTTAA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--TGCATACTA-----CAATTT-TTCA---CA--AA--TTCA-AAGAAA---TGTATA--GTTGC--AG--------TGA----------CG--TATTA-CGTCAC-T-GCAG---A---TAATAGT--GACGCAGT--GATTCGGTCGTTGAGCGC-------CATA--TTGA
gi|12 : aatattaattcaatgcttatatttatatttccggagagtaaactttTATTGATAATACAA--TTCA-AAT---TTATGATTT-TTAAGAAC--TG---A-ATTGG-GGT-GAA-TGCAAACTGGG---------TAGAA-CAGCCGGAATGCTGTT---TACCGCAGT--TTCTTTTTATAGC--------TTTCGAGTGAAGAATATAATGCTGGATTTTTA-TATTA-CAGAAAAGAAAAA-TGTTTTACCTTT---TGTCA-C-TTCGAAA-----TTTA-CTCTT---ATAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--AGCATA
gi|9 : catatatttacattttcagagagtacaatttATTGATAA-ACAA--TTCA-AAT---TTATGATTT-TTAAGAAAC-TG---A-ATTGG-GGT-GAAATGCAAACTGGGG--------TA-AA-CAGCCGGAATGCTGTT----ACCGCAGT--TTCTTTTTATAGC--------TTTCGAGTGAAGAATATAATGCTGGA-TTTTA-TATTATCAGAAAAGAAAAA-TG-TTTACCTTTG--TGTCA-CTTTCGAAA-----TTTAGCTCTT---ATAA-AATT-TTAAGGT-T-TGAAAAAAGACAA--AGCAT-ATA----GA--TTT-TTCA---CAACAA--TTC--AAGAAA---TGTATA--GTTGTG-AG--------TGA----------CG--TTATAGCGTCAT-T-GTAG---A---TTGTAGT--GACGCA-T--GATTGCGTCGTTGAGCGC-------T-CA--TTGA
gi|3 : ATTTAAAATACAAGATTCATAATACTCTATATTCTATCAACAAAACTGGAGAGATTGTTGGTAGCA-TA-AAGCTGAGAGTTCATAATAGAAACAGCCGAAATGTTGTTTGCTACCGCTGCTATTCTTTTTATAGCTTCAACGGTATAAAGTAAGTAGTTTAGTGTCTCATTATCACCTTTA-AAGGAAAAATA---TGTTTAACCTTTATCTGTCACC-TTCGAAAGAGCCTGCA-GTCTATATGTAATTATTGTTAG-GT-TGTAAAAGA--GCAATTTGAATAATA----GA--TTATTTCAGTGCA--GAATTTCAGAAGAAA---TGTATA---CTGC--AGGAGCGTATTAA----------CGTCTAACA-AGTTAG-A-ATAGATAA---TTGTCG------GCA-T--GATTTA--CGGTTCGTGC-------CAGAGCTCGAA-----ATAAAAGAGAAAGTC----GA--AG---A----G--CGAGACACTT-ATAT-------CACTGTTAGAAG-TAATTCTGACATTTAGGT--GTAGAAATTATTC-AA-GTTTG--ATCCA-T-GAAAAGA-AGAGTATCAGATAG--ATTACGATTA---CTTGA---AA--TAGAGACAGATC-AC--A-TTTGTT--ATTCGA-GTTCTCGACAGC-AAG------GAG-CGACCAGGA
gi|2 : agatataaattcaaatgctcaattacgttattaacatcatccgaaagagtaaaaatactgtcatta-AAT---TTATCATTT-TTAACAAC--TG---A-ATTAG-GGT-GAA-TGCAAACTGGG---------TAGAA-CAGCCAGAATGGTGTT---TACCGTAGT--TTCTTTTTATAGC--------TCTCGGGTGAAGAATATAGTGCTGGATTTTTA-AGTTA-CAGAAAAGAAAA--TAGTTTACCTTT---TGTAA-C-TTCGAAA-----TTCA-TTTTA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--AGCATAATAAAACAC-----GTTCA---CA--AA--TTCA-AAGAAA---TGCATA--GATGC--GG--------TGA----------CG--TATTA-TGTCAT-TGGTAG---A---TTGTAAT--GACGCAGT--GATCCGGTCGTTGAGTGC-------CATA--TTGAATGCT-AT----------A-C--ATAT--AG---ATAGCA--C--GACACTTCGTGT-------CACT-T--CAAG-T-----TAA-----AGGT--GT---AATTGTTG-AACGTTG---ACCCAAT-GAATAGA-CCAG-AT--GATGG--ATTA--ATTC---TTTGA--GAA--TTGA---AGA-C-AC-TA----GTT-------------------GC---------TGAG-CG-CCAGGAACCGGT-GACGAGCAAGGTGACAAG--GGAACTA----------GACCCTAGTGACA----AATCGGG-CGT-----GCAAT-CAG-GTGATGGCAAGGAATGATGAACGGCATGGACGGTCGTCGGGGTAAGTAAAAGAATTTGAGAAGAATATTTGCTTTTAGAT--CTGTAGTGTTATCGTATTTACTTTAATAGG-CTATT-ATGTAATTTT--AG---TGGGTT--TTT--TT--CATCAAGAATTTAGAAAG-
gi|6 : T-CTAA-GTAT-TGAAA----GCAA--TG-ATAATG----AT--GTT-TTCA---CA--AA--T-CA-AAGAAAATTTGTATAATGTTGCTTAG--------TGAGACTAGGTATTA--TAAGA-TGTCAGCT-GTAG---GATTTTGTAATATGAATCTGTTGGGGTCGGTGGGTGAGCGGGGGTGAATATAA-TTGAATTATGAT----------GTCTGA-AATCAGCTCA----AGTT--GACACTTCGTGTTGTCACTCACT-T--GAAG-A-----TAA-----CGTTTTGT---AATGGATGTAACGTTT---GATCAGT-GAGTCAATACAG-AT--GATGAGAATTA--ATTTCATTTCTA--GAACATAGT---AGA-G-ACATA-TTTTTTG-A--CGAGGTT---AA-GGCTAAGAATGACGAGTCG-TCCGAAGTGGGTTGACGAGCAAGGTGACAAGGCGGA-CTAT---------G--------GGCAT---AC---GG-AAT-----A---CGCGATG---CGGC--------ATGGACG
gi|8 : TGC--AG--------TGA----------CG--TAATA-CGTCAC-T-GCA
gi|5 : aatattaattcaatgcttatatttatatttccggagagtaaacttttattgataatacacttcattattttcaacaactgaattggggtgaatgcaaaatgggtagaacagcccgaatgttgtttaccgcggtttctttttatgactttcaggtgaggaatacagtgctggatgtttatattacagaaaagaaaaaatgctttaccttttgtcacttcgaaatttatttaagtaacattttaagtttgaaaaagcaatgcatactacaatttttcacaaattcaaagaaatgtatagtA--AG---C----A--C--GGCG-TTCGTGG-------TAT--T--GAAGGT-----TAA-----AAG------------------ACGTTTGGAACCCAGTTGAAGAGA-ACAG-AT--GATG---ATTT--ATTC---TTTGATGAAA--TAGA---AAA-CCAC-TAATTTGCTCGA--C-AGGTTTTCAA-GGCAAAG-----TGAG-CGGCCAGGAA---------------GGTGACAAG--GGATCTA----------G--------GGCA----A----GGGAAT-----G---A-CAA-G---CGGC--------ATGGGCGGG--------TTGGTTGGGTAAAGTTAAGAATTTGAGAAGAATATTTGCTTTTATATATCTGTACTGTTGTCATATTTACTT--TG--G-TTGTTTATGTGACTTTTAAGCTTT---TT--TTTTTTT--CTTCAAGAAATTCGAAAATGGGCATTG-TGTAACGTGAAGGATAT-TTAGT-TTG-TAT--G--TTTGTA--C----AATG-CAGCAAA--CATTGGCTCTTTAATGCTT----TT-ACC-A--CATA-T-TCACTA--TC--AGCC-ATACTCATTTTA-GTTGTTAAA----TT--ATA--TACGTATA-TCTT-AACCTG-AATGA-----TATCC---TT-AAT--CC-C--ACAAT-----TATGATTTCCC-------TTC-----CCTGTGAAACAAAAAAATTA-CAA-ACAAAAA-GTCCTTCTTGCGCCA-TTTTTATCTGGTGATGCGGTCCT--TCTGTGGCTTATTGGATA-------gataatagtgacgcagtgattcggtcgttgagcgccatattga
gi|4 : --AG---C----A--C--GGCTCTTCGTGT-------CACT-T--GAAG-T-----TAA-----AGAC-----------GTTG-AA----------CCAGT-GAAGAGA-ACAG-AT--GATGG--ATTT--ATTC---TTTGA--GAA--TAGA---AAA-C-AC-TA-TTTGCTG-A--CGAGGTTTTCAA-GGCAAAG-----TGAG-CG-CCAGGAACGGGT-GAC------------AAG--GGATCTA----------G--------GGCA----A----GG-AAT-----G---A-CAA-G---CGGC--------ATGGGCGG---------TTGTTGGGGTAAGTTAAAGAATTTGAGAAGAATATTTGCTTTTATAT--CTGTACTGTTGTCATATTTACTT--TG--G-TTGTT-ATGTGATTTT--AG---T---TT--TTTTTTTTTCTTCAAGAATTTCGAAAT-GGGCATTG-TGTAACGTGAAGGGTTA-TTAGT-TTG-TAT--G--TTTGTA--A----AATG-CAGCAAA--CATTGGCTCTTT-ATGCTT----TT-TAC-A--CATA-TGTCACTA--TC--AG-C-ATCTCAATTTTA-GTTGTTAAA----TT--ATA--TACGTATA-TC-T-AACCTGAAATA------TATCC---TT-AAT--CCCC--AC-AT-----TATGATTT-CC-------TTC-----CCTG------TGAAAAAAAATTACCACAAAAGTCTT---CTTGCGCCA-TTTTAATCTGGTGATGCGGTCCTCGTCTGTG--TTATTGGATAACCAGGTTTTGATATTA---A-CTTTT-TAT-TTCTGC
gi|14 : CAC-AT--GATGG--ATTA--ATTC---TTTAA--GAG--T--------------------TGTTG-A--CGAGATTTTGAA-GGCTTGG-----TGAG-CA-CCGGGAACGGGT-GGCAAGCAAGGTGACAAG--GGAACTAGTGACACATCG--------GGCGTGATA----GG-GGTGGCAAG---G-CGA-G---CGGC--------ATGGACAT---------TTGT
gi|16 : GTTTTTAGAT--CTGTAGTATTATCATATTCACTT---T--GACTATT-ATGTAATTTT--AG---G---GT--GTT--TT--AATCAAGAATT
gi|7 : ATTTACTT--AG--G-TTATT-ATGTGATTTT--AG---T---TGGGTTTTTTT--CTTCAAGAATTTTAAAAA-GGGCATTGTTGTAACGTGAAGGGTCAGTTAGTCTTGATAT--GTTTTTGTA--AATAGAATGCCAGCAAATGCATTGGCTTTTT-ATGCTT----TTGTACGA--CATATTGCCGCTA--TCAGAG-CAATCTCAATTTGATGTTTTTAAATTTTTT--ATAAGTTTGTATACTC-TCACCCTGAA---------TATTCCAGTTAAATG-CCCC--AC-ATGTGTATATGATGT-CCTATCTAATTC-----CGTG------TAAAAAAT-A-T------------TC---TTTGCGCCATTTTCAGTCT-GTGATGC-GTTCCAATCGGTT--TTA-TGGATA--------TTAATACGAAAAG-C-TTTCTAT-AGATTCA-TACAT-TTATCAAGGAAAATACATAGCATATGTAAA
gi|10 : TTG-TGTAACGTGAAGGGTCA-TTAGT-TTG-TAT--G--TTTGTATAA----AATG-CAGCAAA--CATTGGCTTTTT-ATGCTT----TT-TAC-A--CATA-TGCCGCTA--TC--AG-C-ACCTCAATTTTA-GTTTTTAAA----TTAAATA--TATGTATA-TC-C-ACCCTGAATTA------TATCC---TT-AATACCCACATAT-AT-----TATGATTT-CC-------TTCTAATTCCTG------TGAAAAATA---------------TT---CTTGCGCCA-TTTCAATCTGGTGATGCGGTTCTCATCTGTG--TTAGTGGATA-------TCTAATACAAAAAAGCTTTTCTAT-ATATTCATTACATTTTATCAAGGAAAATACATAGCATATGTAg
gi|18 : GGGCAA-TTAGT-TTG-TTA--G--TTTGTA--A----AATG-CATCAAA--CATTGGTTCTTT-ATGCTT----TT-TAC-
gi|11 : TAGT-TTG-TATCTG--TTTGTA--A----AATG-CAGCAAA--CATTGGCTTTTT-ATGTTTATGTTT-TAC-A--CATA-TGTCACTA--TC--AG-C-ACCTCAATTTTA-GTT----------------------GTATA-TC-A-ACCCTGAAATAGGCCCATATCC---TT-AAT--CCCC--AC-AT-----TATGATTT-TC-------TTC-----CTCG------TGAAAAA--A-TACCACAAACGTATT---CTTGCGCCA-TTTAAATCTGGTGATGTGGTTCTC---CGTG--TTATTGAATA-------TTTAATACAAAAAG-ATTTTCTATGAT-TTCATTACATGTTATTAAGGAAAATATCTAGCATAT
gi|13 : cTA--T----AACG-TAGCAAA--CATTGGCTC-----TG-TT----TT-TAC-ATTC-TA-TGCCCCCACTTT--AG-C-ATCTCAGTTTt
gi|17 : tttatttattttgtgattactttttatttgtatttaagaactttagaaagcgacatgttataccacacgaaaaaacaaccctttgcgtaacagctgtgaagtataagattgcattttattcgttgtcttagtcatgagataaaaacaATTTTA-GTTTTTAAG----GT--A--------TATA-TC-T-ACCCTGAAA--------TATCT---TT-AAT--CCCC--CC-AT-----TGTG--TT-TC-------TTC-----
gi|15 : ACATAAAAAG-CGTTTCTAT-ATATTCGTTACATGCTATTAAGGAAAATACATGGCATATGTAAATATTttgt
Alignments
lowQualScore : 11 111 11 2222222222 222222222 111 111111 111 11111 111 111 111 11 22222222 2222222222 1111111 2222222 11 888888888888888888888888888888888888888888 2222222 1111111 4444444444444444444444444 111 111 11111 33333333333 1 88888888888888888 3333333333333 11111111 2222222222 1 11 1111 333333333333 11 1111111 1111 11111111 111111 1111 11111 1111111 11111 66666666666666666666666 11 22222222 11
lowQualScore : 0 11 6 111 11 6 6 6 9999999999 6 666666666 6 2 111 0 99 99 999999 6 6 99 5 888 6 6 66666 88 111 6 5 5 5 5 0 77 888 0 99999999999 111 99 99 6 111 99 55 44444444 9999999999 99 6 9999 6666666 99 6 99 99 6 1111111 55 111111111111111111111111111111111111111111 1111111 6 99 8888888 3333333333333333333333333 1 99 1 6 1 6 5 77 77 77 000 77 77 000 888 88888 22222 4 0 3 0 5 11111111111 5 1 22 6 5 6 1 22222222222222222 6666666666666 6 77777777 6 9999999999 8 2 0 3 1 11 1 1 4444 1 6 99 222222222222 3 11 8 1 6 5 5 77 77 4444444 5 66 5 0000 5 5 77 5 2 77 77 5 5 5 5 4 22222222 88888 5 888 5 666666 77 5 66 7777 44444 5 8888888 44444 6 11111111111111111111111 6 3 00 99 3 22222222 22 3 6 0 0 5
lowQualScore : . .. . ... .. . . . .......... . ......... . . ... . .. .. ...... . . .. . ... . . ..... .. ... . . . . . . .. ... . ........... ... .. .. . ... .. .. ........ .......... .. . .... ....... .. . .. .. . ....... .. .......................................... ....... . .. ....... ......................... . .. . . . . . .. .. .. ... .. .. ... ... ..... ..... . . . . . ........... . . .. . . . . ................. ............. . ........ . .......... . . . . . .. . . .... . . .. ............ . .. . . . . . .. .. ....... . .. . .... . . .. . . .. .. . . . . . ........ ..... . ... . ...... .. . .. .... ..... . ....... ..... . ....................... . . .. .. . ........ .. . . . . .
lowQualScore : 8 00 7 777 00 7 7 7 2222222222 7 777777777 7 2 777 3 22 22 222222 7 7 22 7 333 7 7 77777 88 777 7 7 7 7 7 1 99 999 7 55555555555 777 22 22 7 777 22 88 22222222 2222222222 22 7 7777 8888888 22 7 22 22 7 7777777 88 888888888888888888888888888888888888888888 7777777 7 22 7777777 3333333333333333333333333 0 22 0 7 0 7 7 99 99 99 000 99 99 000 666 77777 33333 3 7 6 7 7 33333333333 7 4 00 7 2 7 0 55555555555555555 2222222222222 7 00000000 7 2222222222 0 0 0 2 0 00 0 4 2222 0 7 22 888888888888 2 22 0 0 7 7 7 99 99 8888888 0 99 0 6666 0 0 99 7 7 99 99 7 7 7 7 9 33333333 00000 7 333 4 444444 99 7 44 9999 33333 7 6666666 33333 7 88888888888888888888888 7 7 33 22 2 55555555 66 2 7 8 8 0
consensus : TATTGATAATACAA--TTCA-AAT---TTATGATTTTTAACAA-CTGA-ATTGGGGTG-AATGC----------AAACT-GGG---------TAGAA-CAGCCGGAATGTTGTT---TACCGCGGT--TTCTTTTTATAGCTTT--CG------AGTGAAGAATATAGTGCTGGATTTTTATATTA-CAGAAAAG-AAAA--ATGTTTTACCTTT---TGTCA-C-TTCGAAA-----TTTA-TTCTA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--NGCATAAT--A-GNTT-T-TTCA---CA--AA--TTCA-AAGAAA---TGTATA--GTTGC--AG--------TGA----------CG--TAATA-CGTCAN-T-GTAG---A---TTGTAGT--GACGCAGT--GATT--CGG-TCGTTGAGCGC-------CATA--TTGAATGC----T--------ATG---TC--GAA--AG---NA--C--GACACTTCGTGT-------CACT-T--GAAG-T-----TAA-----AGGT--GT---AATTGTTG-AACGTTTG--ACCCAGT-GAAGAGA-ACAG-AT--GATGG--ATTA--ATTC---TTTGA--GAA--TAGA---AGA-C-AC-TA-TTTGTT-GA--CGAGGTTTTCAA-GGCTAA-G-----TGAG-CG-CCAGGAACGGGT-GACGAGCAAGGTGACAAGG-GANCTA-----------------GGGC---AT------A-GG-AAT-----G-GCGA-G----------CGGCATGGACGG-TTGTTGGGGTAA-GTTAAAGAATTTGAGAAGAATATTTGCTTTTAGAT--CTGTANTGTTGTCATATTTACT----TNGGTTATT-ATGTGATTTT--AG---T-TN--T--TTTTTTCTTCAAGAATTTNGAAAA-GGGCATTG-TGTAACGTGAAGGGTCA-TTAGT-TTG-TAT--G--TTTGTA--A----AATG-CAGCAAA--CATTGGCTCTTT-ATGCTT----TT-TAC-A--CATA-TGCCGCTA--TC--AG-C-AT-CTCAATTTTA-GTTTTTAAA----TT--ATA--TACGTATA-TC-T-ACCCTGAAATA------TATCC--TT-AAT-CCCCAC----AT-----TATGATTT-CC-------TTC-----CCTGTGAAA-AATAA-TACCAC-----AAAAGT--TTCTTGCGCCA-TTTNAATCTGGTGATGCGGTTCTCGTCTGTG--TTATTGGATA-------TTTAATAC-GAAAAGCTTTTCTAT-ATATTCATTACATGTTATTAAGGAAAATACATAGCATATGTAAATATT
Reference ( family-8223 ) : TATTGATAATACAA--TTCA-AAT---TTATGATTTTTAACAA-CTGA-ATTGGGGTG-AATGC----------AAACT-GGG---------TAGAA-CAGCCGGAATGCTGTT---TACCGCAGT--TTCTTTTTATAGCTTT--CG------AGTGAAGAATATAGTGCTGGATTTTTATATTA-CAGAAAAG-AAAA--ATGTTTTACCTTT---TGTCA-C-TTCGAAA-----TTTA-CTCTA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--NGCATAAT--A-GNTT-T-TTCA---CA--AA--TTCA-AAGAAA---TGTATA--GTTGC--AG--------TGA----------CG--TAATA-CGTCAN-T-GTAG---A---TTGTAGT--GACGCAGT--GATT--CGG-TCGTTGAGCGC-------CATA--TTGAAT------T--------ATG---TC--AAA--AG---AA--C--GACACTTCGTGT-------CACT-T--GAAG-T-----TAA-----AGGT--GT---AATTGTTG-AACGTTTG--ACCCAGT-GAANAGA-ACAG-AT--GATGG--ATTA--ATTC---TTTGA--GAA--TAGA---AGA-C-AC-TA-TTTGTT-GA--CGAGGTTTTCAA-GGC-AA-G-----TGAG-CG-CCAGGAACGGGT-GACGAGCAAGGTGACAAGG-GANCTA-----------------GGGC---AT------A-GG-AAT-----G-NCGA-G----------CGGCATGGACGG-TTGTCGGGGTAA-GTTAAAGAATTTGAGAAGAATATTTGCTTTTANAT--CTGTANTGTTGTCATATTTACT----TNGGTTATT-ATGTGATTTT--AG---T-TT--T--TTTTTTCTTCAAGAATTTCGAAAA-GGGCATTG-TGTAACGTGAAGGGTNA-TTAGT-TTG-TAT--G--TTTGTA--A----AATG-CAGCAAA--CATTGGCTCTTT-ATGCTT----TT-TAC-A--CATA-TGCCGCTA--TC--AG-C-AT-CTCAATTTTA-GTTTTTAAA----TT--ATA--TACGTATA-TC-T-ACCCTGAAATA------TATCC--TT-AAT-CCCCAC----AT-----TATGATTT-CC-------TTC-----CCTGTGAAA-AATAA-TACCAC-----AAAAGT--TTCTTGCGCCA-TTTCAATCTGGTGATGCGGTTCTCGTCTGTG--TTATTGGATA-------TTTAATAC-GAAAAGCTTTTCTAT-ATATTCATTACATGTTATCAAGGAAAATACATAGCATATGTAAATATT
gi|1 : TATTGATAATACAA--TTCA-AAT---TTATAATTTTTAACAA--TGACATTGGGGTG-AATAC----------AAACT-GGG---------TAGAA-CAGCCGGTATGTTGTT---TAACGCGGT--TTCCTTTTATAGCTAT--CG------AGTGAAGAATATAGTGCTGGATTTTTATGTTA-CAGAAAAG-AAAA--CTGTTTTACCTCT---TGTCA-C-TTCGAAA-----TTTA-TTCTA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GTAA--AGCATAAT--A-GCTT-TGTTCA---CA--AA--TTCA-AAGAAA---TGTATA--GTTGC--AG--------TGA----------CG--TAATA-CGTCAG-T-GTAG---A---TTGTAGT--GACGCAGT--GATT--CGG-TCGTTTAGCGC-------CATA--TTGAATGC----T--------ATG---TC--AAA--AG---AA--C--GACACTTCGTGT-------CACC-T--GAAG-T-----TAA-----AGGT--AT---AATTGTTG-AATGTTT---ACCCAGT-GAAGAGA-ACAG-AT--GATGG--ATTA--ATTC---TTTGA--GAA--TAGA---AGA-C-AC-TA-TTTGTT-CA--CGAGGTTTTCAA-GGCTAA-G-----TGAG-CG-CCAGGAACAGGT-GACGAGCAAAGTGACAAGG-GATCTA-----------------GGGC---A-------A-GG-AAT-----G-TCGA-G----------CGGCATGGACGG-TTGTTGGGGTAA-TTTAAAGATTTTGAGAAGATTATTTGCTTTTAGAT--CTGGAATGTTCTCATATTGATT----TATGTTATT-ATGTGATTTT--AG---T-TT--T--TTTCTTCTTCAAGAATTTAGAAAG-GGGCATTG-TGTAACGTGAAGGGTCA-TTAAT-TTG-TAT--G--TTTGTA--A----AATG-CAGCAAA--CATTGGCTCTTT-ATGCTT----TT-TAC-A--CATA-TGCCACGA--TC--AG-C-AT-CTTAATTTTA-GTTTTTAAA----TT--ATA--TATGTATA-TC-T-ACCCTGAAATG------TATCC--TT-AAT-CCACAC----AT-----TCTGATTT-CC-------TTC-----CCTGAGAAA-AATAA-TAGCAC-----AAAAGTG-TCCTTGCGCCA-TTTGAATCTGGTGATGCGGTTCTCGTCTGCG--TTATTGGATA-------TTTAATAC-AAAACACTTTTCTAT-ATATGCATTGAATGTTATTAAGAAAAATACATAGCATATGTAAATATT
gi|10 : TTG-TGTAACGTGAAGGGTCA-TTAGT-TTG-TAT--G--TTTGTATAA----AATG-CAGCAAA--CATTGGCTTTTT-ATGCTT----TT-TAC-A--CATA-TGCCGCTA--TC--AG-C-AC-CTCAATTTTA-GTTTTTAAA----TTAAATA--TATGTATA-TC-C-ACCCTGAATTA------TATCC--TT-AAT-ACCCACATATAT-----TATGATTT-CC-------TTCTAATTCCTGTGAAA-AATA---------------------TTCTTGCGCCA-TTTCAATCTGGTGATGCGGTTCTCATCTGTG--TTAGTGGATA-------TCTAATACAAAAAAGCTTTTCTAT-ATATTCATTACATTTTATCAAGGAAAATACATAGCATATGTA
gi|11 : TAGT-TTG-TATCTG--TTTGTA--A----AATG-CAGCAAA--CATTGGCTTTTT-ATGTTTATGTTT-TAC-A--CATA-TGTCACTA--TC--AG-C-AC-CTCAATTTTA-GTT----------------------GTATA-TC-A-ACCCTGAAATAGGCCCATATCC--TT-AAT-CCCCAC----AT-----TATGATTT-TC-------TTC-----CTCGTGAAA-AA--A-TACCAC-----AAACGTA-TTCTTGCGCCA-TTTAAATCTGGTGATGTGGTTCTC---CGTG--TTATTGAATA-------TTTAATAC-AAAAAGATTTTCTATGAT-TTCATTACATGTTATTAAGGAAAATATCTAGCATAT
gi|12 : cTATTGATAATACAA--TTCA-AAT---TTATGATTTTTAAGAA-CTGA-ATTGGGGTG-AATGC----------AAACT-GGG---------TAGAA-CAGCCGGAATGCTGTT---TACCGCAGT--TTCTTTTTATAGCTTT--CG------AGTGAAGAATATAATGCTGGATTTTTATATTA-CAGAAAAG-AAAA--ATGTTTTACCTTT---TGTCA-C-TTCGAAA-----TTTA-CTCTT---ATAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--AGCATAt
gi|13 : catatatttacattttcagagagtacaatttTA--T----AACG-TAGCAAA--CATTGGCTC-----TG-TT----TT-TAC-ATTC-TA-TGCCCCCACTTT--AG-C-AT-CTCAGTTT
gi|14 : tttatttattttgtgattactttttatttgtatttaagaactttagaaagcgacatgttataccacacgaaaaaacaaccctttgcgtaacagctgtgaagtataagattgcattttattcgttgtcttagtcatgagataaaaacaCAC-AT--GATGG--ATTA--ATTC---TTTAA--GAG----------------------TTGTT-GA--CGAGATTTTGAA-GGCTTG-G-----TGAG-CA-CCGGGAACGGGT-GGCAAGCAAGGTGACAAGG-GAACTAGTGACACATC-------GGGCGTGAT------A-GG-GGTGGCAAG-GCGA-G----------CGGCATGGACAT-TTGT
gi|15 : AAAAGCGTTTCTAT-ATATTCGTTACATGCTATTAAGGAAAATACATGGCATATGTAAATATT
gi|16 : ctgcctaatggtagacaaccgacataGTTTTTAGAT--CTGTAGTATTATCATATTCACT----TTGACTATT-ATGTAATTTT--AG------G--G--TGTTTTAATCAAGAATTagt
gi|17 : ATTTTA-GTTTTTAAG----GT--ATA--TA-------TC-T-ACCCTGAA--A------TATCT--TT-AAT-CCCCCC----AT-----TGTG--TT-TC-------TTC-----
gi|18 : GGGCAA-TTAGT-TTG-TTA--G--TTTGTA--A----AATG-CATCAAA--CATTGGTTCTTT-ATGCTT----TT-TAC-ttgt
gi|2 : -AAT---TTATCATTTTTAACAA-CTGA-ATTAGGGTG-AATGC----------AAACT-GGG---------TAGAA-CAGCCAGAATGGTGTT---TACCGTAGT--TTCTTTTTATAGCTCT--CG------GGTGAAGAATATAGTGCTGGATTTTTAAGTTA-CAGAAAAG--AAA--ATAGTTTACCTTT---TGTAA-C-TTCGAAA-----TTCA-TTTTA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--AGCATAATAAA-ACAC-G-TTCA---CA--AA--TTCA-AAGAAA---TGCATA--GATGC--GG--------TGA----------CG--TATTA-TGTCAT-TGGTAG---A---TTGTAAT--GACGCAGT--GATC--CGG-TCGTTGAGTGC-------CATA--TTGAATGCTATAC--------ATA---TA--GAT--AG---CA--C--GACACTTCGTGT-------CACT-T--CAAG-T-----TAA-----AGGT--GT---AATTGTTG-AACG-TTG--ACCCAAT-GAATAGA-CCAG-AT--GATGG--ATTA--ATTC---TTTGA--GAA--TTGA---AGA-C-AC-TA----GTT-G---C-------------------------TGAG-CG-CCAGGAACCGGT-GACGAGCAAGGTGACAAGG-GAACTAGACCCTAGTGACAAATCGGGC---GTGCAATCA-GGTGAT-----G-GCAA-GGAATGATGAACGGCATGGACGG-TCGTCGGGGTAA-GTAAAAGAATTTGAGAAGAATATTTGCTTTTAGAT--CTGTAGTGTTATCGTATTTACTTTAATAGGCTATT-ATGTAATTTT--AG---TGGG--T--TTTTTTCATCAAGAATTTAGAAA
gi|3 : ATTTAAAATACAAGATTCATAATACTCTATA--TTCTATCAA-CAAA-ACTGGAGAG-ATTGTTGGTAGCATAAAGCT-GAGAGTTCATAATAGAAACAGCCGAAATGTTGTTTGCTACCGCTGCTATTCTTTTTATAGCTTCAACGGTATAAAGTAAGTAGTTTAGTGTCTCATTATCACCTT----TAAAGG-AAAAATATGTTTAACCTTTATCTGTCACC-TTCGAAAGAGCCTGCA-GTCTATATGTAATTATTGTTAG-GT-TGTAAAAGA--GCAATTTGAATAAT--A-GATTAT-TTCAGTGCA--GAATTTCAGAAGAAA---TGTATA---CTGC--AGGAGCGTATTAA----------CGTCTAACA-AGTTAG-A-ATAGATAA---TTGTCG------GCA-T--GATTTACGGTTCGT-----GC-------CAGAGCTCGAAA------TAAAAGAGAAAG---TC---GA--AG---AG--CGAGACACTT-ATAT-------CACTGTTAGAAG-TAATTCTGACATTTAGGT--GTAGAAATTATTC-AA-GTTTG--ATCCA-T-GAAAAGA-AGAGTATCAGATAG--ATTACGATTA---CTTGA---AA--TAGAGACAGATC-AC--A-TTTGTT--ATTCGA-GTTCTCGACAGC-AA-G------GAG-CGACCAGGAg
gi|4 : agatataaattcaaatgctcaattacgttattaacatcatccgaaagagtaaaaatactgtcatta--AG---CA--C--GGCTCTTCGTGT-------CACT-T--GAAG-T-----TAA-----AG-------------------ACGTT-G--AACCAGT-GAAGAGA-ACAG-AT--GATGG--ATTT--ATTC---TTTGA--GAA--TAGA---AAA-C-AC-TA-TTTGCT-GA--CGAGGTTTTCAA-GGC-AAAG-----TGAG-CG-CCAGGAACGGGT-GAC------------AAGG-GATCTA-----------------GGGC---A-------A-GG-AAT-----G-ACAA-G----------CGGCATGGGCGG-TTGTTGGGGTAA-GTTAAAGAATTTGAGAAGAATATTTGCTTTTATAT--CTGTACTGTTGTCATATTTACT----TTGGTTGTT-ATGTGATTTT--AG---T-TT--TTTTTTTTTCTTCAAGAATTTCGAAAT-GGGCATTG-TGTAACGTGAAGGGTTA-TTAGT-TTG-TAT--G--TTTGTA--A----AATG-CAGCAAA--CATTGGCTCTTT-ATGCTT----TT-TAC-A--CATA-TGTCACTA--TC--AG-C-AT-CTCAATTTTA-GTTGTTAAA----TT--ATA--TACGTATA-TC-T-AACCTGAAATA------TATCC--TT-AAT-CCCCAC----AT-----TATGATTT-CC-------TTC-----CCTGTGAAA-AAAAATTACCAC-----AAAAGTC-TTCTTGCGCCA-TTTTAATCTGGTGATGCGGTCCTCGTCTGTG--TTATTGGATAACCAGGTTTTGATAT-TAA---CTTTT-TAT-
gi|5 : A--AG---CA--C--GGCG-TTCGTGG-------TA-T-T--GAAGGT-----TAA-----AAG------------------ACGTTTGGAACCCAGTTGAAGAGA-ACAG-AT--GATG---ATTT--ATTC---TTTGATGAAA--TAGA---AAA-CCAC-TAATTTGCTCGA--C-AGGTTTTCAA-GGC-AAAG-----TGAG-CGGCCAGGAA---------------GGTGACAAGG-GATCTA-----------------GGGC---AA------G-GG-AAT-----G-ACAA-G----------CGGCATGGGCGGGTTGGTTGGGTAAAGTTAA-GAATTTGAGAAGAATATTTGCTTTTATATATCTGTACTGTTGTCATATTTACT----TTGGTTGTTTATGTGACTTTTAAGCTTT-TT--T--TTTTTTCTTCAAGAAATTCGAAAATGGGCATTG-TGTAACGTGAAGGATAT-TTAGT-TTG-TAT--G--TTTGTA--C----AATG-CAGCAAA--CATTGGCTCTTTAATGCTT----TT-ACC-A--CATA-T-TCACTA--TC--AGCC-ATACTC-ATTTTA-GTTGTTAAA----TT--ATA--TACGTATA-TCTT-AACCTGAATGA------TATCC--TT-AAT--CCCACA---AT-----TATGATTTCCC-------TTC-----CCTGTGAAACAAAAA-AATTACAAACAAAAAGTCCTTCTTGCGCCA-TTTTTATCTGGTGATGCGGTCCT--TCTGTGGCTTATTGGATA-------ttctgc
gi|6 : T-CTAA-GTAT-TGAAA----GCAA--TG-ATAAT--G-ATGT-T-TTCA---CA--AA--T-CA-AAGAAAATTTGTATAATGTTGCTTAG--------TGAGACTAGGTATTA--TAAGA-TGTCAGCT-GTAG---GATTTTGTAATATGAATCTGTTGGGGT--CGG-TGGGTGAGCGGGGGTGAATATAA-TTGAAT------T--------ATGATGTCTGAAATCAGCTCAAGTT--GACACTTCGTGTTGTCACTCACT-T--GAAG-A-----TAA-----CGTTTTGT---AATGGATGTAACGTTTG--ATC-AGT-GAGTCAATACAG-AT--GATGAGAATTA--ATTTCATTTCTA--GAACATAGT---AGA-G-ACATA-TTTTTT-GA--CGAGGTT---AA-GGCTAA-GAATGACGAGTCG-TCCGAAGTGGGTTGACGAGCAAGGTGACAAGGCGGACTAT----------------GGGC---AT------ACGG-AAT-----ACGCGATG----------CGGCATGGACG
gi|7 : ATTTACT----TAGGTTATT-ATGTGATTTT--AG---T-TGGGT--TTTTTTCTTCAAGAATTTTAAAAA-GGGCATTGTTGTAACGTGAAGGGTCAGTTAGTCTTGATAT--GTTTTTGTA--AATAGAATGCCAGCAAATGCATTGGCTTTTT-ATGCTT----TTGTACGA--CATATTGCCGCTA--TCAGAG-CAAT-CTCAATTTGATGTTTTTAAATTTTTT--ATAAGTTTGTATACTC-TCACCCTG-AATA------T-TCCAGTTAAATGCCCCAC----ATGTGTATATGATGT-CCTATCTAATTC-----CGTGTAAAA-AATA------------------T--TCTTTGCGCCATTTTCAGTCT-GTGATGC-GTTCCAATCGGTT--TTA-TGGATA--------TTAATAC-GAAAAGC-TTTCTAT-AGATTCA-TACAT-TTATCAAGGAAAATACATAGCATATGTAAA
gi|8 : TATTGATAATACAC--TTCA-------TTAT---TTTCAACAA-CTGA-ATTGGGGTG-AATGC----------AAAAT-GGG---------TAGAA-CAGCCCGAATGTTGTT---TACCGCGGT--TTCTTTTTATGACTTT--CA------GGTGAGGAATACAGTGCTGGATGTTTATATTA-CAGAAAAGAAAAA--ATGCTTTACCTTT---TGTCA-C-TTCGAAA-----TTTA-TTTAA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--TGCATACT--ACAATT-T-TTCA---CA--AA--TTCA-AAGAAA---TGTATA--GTTGC--AG--------TGA----------CG--TATTA-CGTCAC-T-GCAG---A---TAATAGT--GACGCAGT--GATT--CGG-TCGTTGAGCGC-------CATA--TTGAg
gi|9 : aatattaattcaatgcttatatttatatttccggagagtaaactttATTGATAA-ACAA--TTCA-AAT---TTATGATTTTTAAGAAACTGA-ATTGGGGTGAAATGC----------AAACTGGGG---------TA-AA-CAGCCGGAATGCTG-T---TACCGCAGT--TTCTTTTTATAGCTTT--CG------AGTGAAGAATATAATGCTGGA-TTTTATATTATCAGAAAAG-AAAA--ATG-TTTACCTTTG--TGTCA-CTTTCGAAA-----TTTAGCTCTT---ATAA-AATT-TTAAGGT-T-TGAAAAAAGACAA--AGCAT-AT--A-GATT-T-TTCA---CAACAA--TTC--AAGAAA---TGTATA--GTTGTG-AG--------TGA----------CG--TTATAGCGTCAT-T-GTAG---A---TTGTAGT--GACGCA-T--GATT--GCG-TCGTTGAGCGC-------T-CA--TTGA
Alignments
lowQualScore : 11 111 11 2222222222 222222222 111 111111 111 11111 111 111 111 11 22222222 2222222222 1111111 111 2222222 3333333 1 22222222 2222222 1111111 4444444444444444444444444 111 111 11111 111111 1 88888888888888888 33333333333333333333333333333333333333 1 11 1111 222222222 11 1111111 1111 11111111 111111 1111 11111 1111111 11111 66666666666666666666666 11 22222222 11
lowQualScore : 0 11 6 111 11 6 6 6 9999999999 6 666666666 6 111 2 99 99 999999 6 6 99 5 888 6 6 66666 6 111 6 5 5 5 5 0 77 888 0 99999999999 111 99 99 6 111 99 55 44444444 9999999999 99 6 9999 6666666 99 6 99 99 6 111 1111111 6 1111111 0 6 1 44444444 1111111 6 99 8888888 3333333333333333333333333 1 99 1 6 1 6 5 77 77 77 000 77 77 1 000 888 88888 22222 4 0 3 0 5 8 444444 5 1 22 6 5 6 1 22222222222222222 88888888888888888888888888888888888888 6 8 0 3 11 1 1 4444 1 6 99 666666666 99 1 11 8 1 6 5 5 77 77 4444444 5 66 5 0000 5 5 77 5 2 77 77 5 5 5 5 4 22222222 88888 5 888 5 666666 77 5 66 7777 44444 5 8888888 44444 6 11111111111111111111111 6 1 00 99 3 22222222 22 3 6 0 0 5
lowQualScore : . .. . ... .. . . . .......... . ......... . ... . .. .. ...... . . .. . ... . . ..... . ... . . . . . . .. ... . ........... ... .. .. . ... .. .. ........ .......... .. . .... ....... .. . .. .. . ... ....... . ....... . . . ........ ....... . .. ....... ......................... . .. . . . . . .. .. .. ... .. .. . ... ... ..... ..... . . . . . . ...... . . .. . . . . ................. ...................................... . . . . .. . . .... . . .. ......... .. . .. . . . . . .. .. ....... . .. . .... . . .. . . .. .. . . . . . ........ ..... . ... . ...... .. . .. .... ..... . ....... ..... . ....................... . . .. .. . ........ .. . . . . .
lowQualScore : 8 00 7 777 00 7 7 7 2222222222 7 777777777 7 777 2 22 22 222222 7 7 22 7 333 7 7 77777 7 777 7 7 7 7 7 1 99 999 7 55555555555 777 22 22 7 777 22 88 22222222 2222222222 22 7 7777 8888888 22 7 22 22 7 777 7777777 7 5555555 0 7 0 22222222 7777777 7 22 7777777 3333333333333333333333333 0 22 0 7 0 7 7 99 99 99 000 99 99 7 000 666 77777 33333 3 7 6 7 7 9 444444 7 4 00 7 2 7 0 55555555555555555 00000000000000000000000000000000000000 7 0 0 2 00 0 4 2222 0 7 22 777777777 22 0 22 0 0 7 7 7 99 99 8888888 0 99 0 6666 0 0 99 7 7 99 99 7 7 7 7 9 33333333 00000 7 333 4 444444 99 7 44 9999 33333 7 6666666 33333 7 88888888888888888888888 7 0 33 22 2 55555555 66 2 7 8 8 0
consensus : TATTGATAATACAA--TTCA-AAT---TTATGATTTTTAACAA-CTGA-ATTGGGGTG-AATGC----------AAACT-GGG---------TAGAA-CAGCCGGAATGTTGTT---TACCGCGGT--TTCTTTTTATAGCTTT--CG------AGTGAAGAATATAGTGCTGGATTTTTATATTA-CAGAAAAG-AAAA--ATGTTTTACCTTT---TGTCA-C-TTCGAAA-----TTTA-TTCTA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--NGCATAAT--A-GNTT-T-TTCA---CA--AA--TTCA-AAGAAA---TGTATA--GTTGC--AG--------TGA----------CG--TAATA-CGTCAN-T-GTAG---A---TTGTAGT--GACGCAGT--GATT--CGG-TCGTT---GAGCGC-------CATA-TTGAATGNTG---ATGTC-GAA-AGCA--------CGACACTTCGTGT-------CACT-T--GAAG-T-----TAA-----AGGT--GT---AATTGTTG-AACGTTTG--ACCCAGT-GAAGAGA-ACAG-AT--GATGG--ATTA--ATTC---TTTGA--GAA--TAGA---AGA-C-AC-TA-TTTGTT-GA--CGAGGTTTTCAA-GGCTAAG-----TGAG-CG-CCAGGAACGGGT-GACGAGCAAGGTGACAAGG-GANCTA-----------------GGGC---AT------A-GG-AAT-----G-GC----------GA-GCGGCATGGACGG-TTGTTGGGGTAA-GTTAAAGAATTTGAGAAGAATATTTGCTTTTAGAT--CTGTANTGTTGTCATATTTACT----TNGGTTATT-ATGTGATTTT--AG---T-T--NTTTT--TTTCTTCAAGAATTTNGAAAA-GGGCATTG-TGTAACGTGAAGGGTCA-TTAGT-TTG-TAT--G--TTTGTA--A----AATG-CAGCAAA--CATTGGCTCTTT-ATGCTT----TT-TAC-A--CATA-TGCCGCTA--TC--AG-C-AT-CTCAATTTTA-GTTTTTAAA----TT--ATA--TACGTATA-TC-T-ACCCTGAAATA------TATCC--TT-AAT-CCCCAC----AT-----TATGATTT-CC-------TTC-----CCTGTGAAA-AATAA-TACCAC-----AAAAGT--TTCTTGCGCCA-TTTNAATCTGGTGATGCGGTTCTCGTCTGTG--TTATTGGATA-------TTTAATAC-GAAAAGCTTTTCTAT-ATATTCATTACATGTTATTAAGGAAAATACATAGCATATGTAAATATT
Reference ( family-8223 ) : TATTGATAATACAA--TTCA-AAT---TTATGATTTTTAACAA-CTGA-ATTGGGGTG-AATGC----------AAACT-GGG---------TAGAA-CAGCCGGAATGTTGTT---TACCGCGGT--TTCTTTTTATAGCTTT--CG------AGTGAAGAATATAGTGCTGGATTTTTATATTA-CAGAAAAG-AAAA--ATGTTTTACCTTT---TGTCA-C-TTCGAAA-----TTTA-TTCTA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--NGCATAAT--A-GNTT-T-TTCA---CA--AA--TTCA-AAGAAA---TGTATA--GTTGC--AG--------TGA----------CG--TAATA-CGTCAN-T-GTAG---A---TTGTAGT--GACGCAGT--GATT--CGG-TCGTT---GAGCGC-------CATA-TTGAATGCT----ATGTC-GAA-AGNA--------CGACACTTCGTGT-------CACT-T--GAAG-T-----TAA-----AGGT--GT---AATTGTTG-AACGTTTG--ACCCAGT-GAAGAGA-ACAG-AT--GATGG--ATTA--ATTC---TTTGA--GAA--TAGA---AGA-C-AC-TA-TTTGTT-GA--CGAGGTTTTCAA-GGCTAAG-----TGAG-CG-CCAGGAACGGGT-GACGAGCAAGGTGACAAGG-GANCTA-----------------GGGC---AT------A-GG-AAT-----G-GC----------GA-GCGGCATGGACGG-TTGTTGGGGTAA-GTTAAAGAATTTGAGAAGAATATTTGCTTTTAGAT--CTGTANTGTTGTCATATTTACT----TNGGTTATT-ATGTGATTTT--AG---T-T--NTTTT--TTTCTTCAAGAATTTNGAAAA-GGGCATTG-TGTAACGTGAAGGGTCA-TTAGT-TTG-TAT--G--TTTGTA--A----AATG-CAGCAAA--CATTGGCTCTTT-ATGCTT----TT-TAC-A--CATA-TGCCGCTA--TC--AG-C-AT-CTCAATTTTA-GTTTTTAAA----TT--ATA--TACGTATA-TC-T-ACCCTGAAATA------TATCC--TT-AAT-CCCCAC----AT-----TATGATTT-CC-------TTC-----CCTGTGAAA-AATAA-TACCAC-----AAAAGT--TTCTTGCGCCA-TTTNAATCTGGTGATGCGGTTCTCGTCTGTG--TTATTGGATA-------TTTAATAC-GAAAAGCTTTTCTAT-ATATTCATTACATGTTATTAAGGAAAATACATAGCATATGTAAATATT
gi|1 : TATTGATAATACAA--TTCA-AAT---TTATAATTTTTAACAA--TGACATTGGGGTG-AATAC----------AAACT-GGG---------TAGAA-CAGCCGGTATGTTGTT---TAACGCGGT--TTCCTTTTATAGCTAT--CG------AGTGAAGAATATAGTGCTGGATTTTTATGTTA-CAGAAAAG-AAAA--CTGTTTTACCTCT---TGTCA-C-TTCGAAA-----TTTA-TTCTA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GTAA--AGCATAAT--A-GCTT-TGTTCA---CA--AA--TTCA-AAGAAA---TGTATA--GTTGC--AG--------TGA----------CG--TAATA-CGTCAG-T-GTAG---A---TTGTAGT--GACGCAGT--GATT--CGG-TCGTT---TAGCGC-------CATA-TTGAATGCT----ATGTC-AAA-AGAA--------CGACACTTCGTGT-------CACC-T--GAAG-T-----TAA-----AGGT--AT---AATTGTTG-AATGTTT---ACCCAGT-GAAGAGA-ACAG-AT--GATGG--ATTA--ATTC---TTTGA--GAA--TAGA---AGA-C-AC-TA-TTTGTT-CA--CGAGGTTTTCAA-GGCTAAG-----TGAG-CG-CCAGGAACAGGT-GACGAGCAAAGTGACAAGG-GATCTA-----------------GGGC---A-------A-GG-AAT-----G-TC----------GA-GCGGCATGGACGG-TTGTTGGGGTAA-TTTAAAGATTTTGAGAAGATTATTTGCTTTTAGAT--CTGGAATGTTCTCATATTGATT----TATGTTATT-ATGTGATTTT--AG---T-T--TTTTT--CTTCTTCAAGAATTTAGAAAG-GGGCATTG-TGTAACGTGAAGGGTCA-TTAAT-TTG-TAT--G--TTTGTA--A----AATG-CAGCAAA--CATTGGCTCTTT-ATGCTT----TT-TAC-A--CATA-TGCCACGA--TC--AG-C-AT-CTTAATTTTA-GTTTTTAAA----TT--ATA--TATGTATA-TC-T-ACCCTGAAATG------TATCC--TT-AAT-CCACAC----AT-----TCTGATTT-CC-------TTC-----CCTGAGAAA-AATAA-TAGCAC-----AAAAGTG-TCCTTGCGCCA-TTTGAATCTGGTGATGCGGTTCTCGTCTGCG--TTATTGGATA-------TTTAATAC-AAAACACTTTTCTAT-ATATGCATTGAATGTTATTAAGAAAAATACATAGCATATGTAAATATT
gi|10 : TTG-TGTAACGTGAAGGGTCA-TTAGT-TTG-TAT--G--TTTGTATAA----AATG-CAGCAAA--CATTGGCTTTTT-ATGCTT----TT-TAC-A--CATA-TGCCGCTA--TC--AG-C-AC-CTCAATTTTA-GTTTTTAAA----TTAAATA--TATGTATA-TC-C-ACCCTGAATTA------TATCC--TT-AAT-ACCCACATATAT-----TATGATTT-CC-------TTCTAATTCCTGTGAAA-AATA---------------------TTCTTGCGCCA-TTTCAATCTGGTGATGCGGTTCTCATCTGTG--TTAGTGGATA-------TCTAATACAAAAAAGCTTTTCTAT-ATATTCATTACATTTTATCAAGGAAAATACATAGCATATGTA
gi|11 : TAGT-TTG-TATCTG--TTTGTA--A----AATG-CAGCAAA--CATTGGCTTTTT-ATGTTTATGTTT-TAC-A--CATA-TGTCACTA--TC--AG-C-AC-CTCAATTTTA-GTT----------------------GTATA-TC-A-ACCCTGAAATAGGCCCATATCC--TT-AAT-CCCCAC----AT-----TATGATTT-TC-------TTC-----CTCGTGAAA-AA--A-TACCAC-----AAACGTA-TTCTTGCGCCA-TTTAAATCTGGTGATGTGGTTCTC---CGTG--TTATTGAATA-------TTTAATAC-AAAAAGATTTTCTATGAT-TTCATTACATGTTATTAAGGAAAATATCTAGCATAT
gi|12 : cTATTGATAATACAA--TTCA-AAT---TTATGATTTTTAAGAA-CTGA-ATTGGGGTG-AATGC----------AAACT-GGG---------TAGAA-CAGCCGGAATGCTGTT---TACCGCAGT--TTCTTTTTATAGCTTT--CG------AGTGAAGAATATAATGCTGGATTTTTATATTA-CAGAAAAG-AAAA--ATGTTTTACCTTT---TGTCA-C-TTCGAAA-----TTTA-CTCTT---ATAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--AGCATAt
gi|13 : catatatttacattttcagagagtacaatttTA--T----AACG-TAGCAAA--CATTGGCTC-----TG-TT----TT-TAC-ATTC-TA-TGCCCCCACTTT--AG-C-AT-CTCAGTTT
gi|14 : tttatttattttgtgattactttttatttgtatttaagaactttagaaagcgacatgttataccacacgaaaaaacaaccctttgcgtaacagctgtgaagtataagattgcattttattcgttgtcttagtcatgagataaaaacaCAC-AT--GATGG--ATTA--ATTC---TTTAA--GAG--T--------------------TGTT-GA--CGAGATTTTGAA-GGCTTGG-----TGAG-CA-CCGGGAACGGGT-GGCAAGCAAGGTGACAAGG-GAACTAGTGACACATC-------GGGCGTGAT------A-GG-GGTGGCAAG-GC----------GA-GCGGCATGGACAT-TTGT
gi|15 : AAAAGCGTTTCTAT-ATATTCGTTACATGCTATTAAGGAAAATACATGGCATATGTAAATATT
gi|16 : ctgcctaatggtagacaaccgacataGTTTTTAGAT--CTGTAGTATTATCATATTCACT----TTGACTATT-ATGTAATTTT--AG--------GGTGT--TTTAATCAAGAATTagt
gi|17 : ATTTTA-GTTTTTAAG----GT--ATA--TA-------TC-T-ACCCTGAA--A------TATCT--TT-AAT-CCCCCC----AT-----TGTG--TT-TC-------TTC-----
gi|18 : GGGCAA-TTAGT-TTG-TTA--G--TTTGTA--A----AATG-CATCAAA--CATTGGTTCTTT-ATGCTT----TT-TAC-ttgt
gi|2 : -AAT---TTATCATTTTTAACAA-CTGA-ATTAGGGTG-AATGC----------AAACT-GGG---------TAGAA-CAGCCAGAATGGTGTT---TACCGTAGT--TTCTTTTTATAGCTCT--CG------GGTGAAGAATATAGTGCTGGATTTTTAAGTTA-CAGAAAAG--AAA--ATAGTTTACCTTT---TGTAA-C-TTCGAAA-----TTCA-TTTTA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--AGCATAATAAA-ACAC-G-TTCA---CA--AA--TTCA-AAGAAA---TGCATA--GATGC--GG--------TGA----------CG--TATTA-TGTCAT-TGGTAG---A---TTGTAAT--GACGCAGT--GATC--CGG-TCGTT---GAGTGC-------CATA-TTGAATGCTATACATATA-GAT-AGCA--------CGACACTTCGTGT-------CACT-T--CAAG-T-----TAA-----AGGT--GT---AATTGTTG-AACG-TTG--ACCCAAT-GAATAGA-CCAG-AT--GATGG--ATTA--ATTC---TTTGA--GAA--TTGA---AGA-C-AC-TA----GTT-G---C------------------------TGAG-CG-CCAGGAACCGGT-GACGAGCAAGGTGACAAGG-GAACTAGACCCTAGTGACAAATCGGGC---GTGCAATCA-GGTGAT-----G-GCAAGGAATGATGA-ACGGCATGGACGG-TCGTCGGGGTAA-GTAAAAGAATTTGAGAAGAATATTTGCTTTTAGAT--CTGTAGTGTTATCGTATTTACTTTAATAGGCTATT-ATGTAATTTT--AG---TGG--GTTTT--TTTCATCAAGAATTTAGAAA
gi|3 : ATTTAAAATACAAGATTCATAATACTCTATA--TTCTATCAA-CAAA-ACTGGAGAG-ATTGTTGGTAGCATAAAGCT-GAGAGTTCATAATAGAAACAGCCGAAATGTTGTTTGCTACCGCTGCTATTCTTTTTATAGCTTCAACGGTATAAAGTAAGTAGTTTAGTGTCTCATTATCACCTT----TAAAGG-AAAAATATGTTTAACCTTTATCTGTCACC-TTCGAAAGAGCCTGCA-GTCTATATGTAATTATTGTTAG-GT-TGTAAAAGA--GCAATTTGAATAAT--A-GATTAT-TTCAGTGCA--GAATTTCAGAAGAAA---TGTATA---CTGC--AGGAGCGTATTAA----------CGTCTAACA-AGTTAG-A-ATAGATAA---TTGTCG------GCA-T--GATTTACGGTTCGTGCCAGAGCTC-------GAAA-TAAAAGAGA----AAGTC-GAAGAGCG--------AGACACTT-ATAT-------CACTGTTAGAAG-TAATTCTGACATTTAGGT--GTAGAAATTATTC-AA-GTTTG--ATCCA-T-GAAAAGA-AGAGTATCAGATAG--ATTACGATTA---CTTGA---AA--TAGAGACAGATC-AC--A-TTTGTT--ATTCGA-GTTCTCGACAGC-AAG------GAG-CGACCAGGAg
gi|4 : agatataaattcaaatgctcaattacgttattaacatcatccgaaagagtaaaaatactgtcatta-AGCA--------CGGCTCTTCGTGT-------CACT-T--GAAG-T-----TAA-----AG-------------------ACGTT-G--AACCAGT-GAAGAGA-ACAG-AT--GATGG--ATTT--ATTC---TTTGA--GAA--TAGA---AAA-C-AC-TA-TTTGCT-GA--CGAGGTTTTCAA-GGCAAAG-----TGAG-CG-CCAGGAACGGGT-GAC------------AAGG-GATCTA-----------------GGGC---A-------A-GG-AAT-----G-AC----------AA-GCGGCATGGGCGG-TTGTTGGGGTAA-GTTAAAGAATTTGAGAAGAATATTTGCTTTTATAT--CTGTACTGTTGTCATATTTACT----TTGGTTGTT-ATGTGATTTT--AG---T-T--TTTTTTTTTTCTTCAAGAATTTCGAAAT-GGGCATTG-TGTAACGTGAAGGGTTA-TTAGT-TTG-TAT--G--TTTGTA--A----AATG-CAGCAAA--CATTGGCTCTTT-ATGCTT----TT-TAC-A--CATA-TGTCACTA--TC--AG-C-AT-CTCAATTTTA-GTTGTTAAA----TT--ATA--TACGTATA-TC-T-AACCTGAAATA------TATCC--TT-AAT-CCCCAC----AT-----TATGATTT-CC-------TTC-----CCTGTGAAA-AAAAATTACCAC-----AAAAGTC-TTCTTGCGCCA-TTTTAATCTGGTGATGCGGTCCTCGTCTGTG--TTATTGGATAACCAGGTTTTGATAT-TAA---CTTTT-TAT-
gi|5 : A-AGCA--------CGGCG-TTCGTGG-------TA-T-T--GAAGGT-----TAA-----AAG------------------ACGTTTGGAACCCAGTTGAAGAGA-ACAG-AT--GATG---ATTT--ATTC---TTTGATGAAA--TAGA---AAA-CCAC-TAATTTGCTCGA--C-AGGTTTTCAA-GGCAAAG-----TGAG-CGGCCAGGAA---------------GGTGACAAGG-GATCTA-----------------GGGC---AA------G-GG-AAT-----G-AC----------AA-GCGGCATGGGCGGGTTGGTTGGGTAAAGTTAA-GAATTTGAGAAGAATATTTGCTTTTATATATCTGTACTGTTGTCATATTTACT----TTGGTTGTTTATGTGACTTTTAAGCTTT-T--TTTTT--TTTCTTCAAGAAATTCGAAAATGGGCATTG-TGTAACGTGAAGGATAT-TTAGT-TTG-TAT--G--TTTGTA--C----AATG-CAGCAAA--CATTGGCTCTTTAATGCTT----TT-ACC-A--CATA-T-TCACTA--TC--AGCC-ATACTC-ATTTTA-GTTGTTAAA----TT--ATA--TACGTATA-TCTT-AACCTGAATGA------TATCC--TT-AAT--CCCACA---AT-----TATGATTTCCC-------TTC-----CCTGTGAAACAAAAA-AATTACAAACAAAAAGTCCTTCTTGCGCCA-TTTTTATCTGGTGATGCGGTCCT--TCTGTGGCTTATTGGATA-------ttctgc
gi|6 : T-CTAA-GTAT-TGAAA----GCAA--TG-ATAAT--G-ATGT-T-TTCA---CA--AA--T-CA-AAGAAAATTTGTATAATGTTGCTTAG--------TGAGACTAGGTATTA--TAAGA-TGTCAGCT-GTAG---GATTTTGTAATATGAATCTGTTGGGGT--CGG-TGGGT---GAGCGGGGGTGAATATAATTGAATTATG---ATGTCTGAA-ATCAGCTCAAGTTGACACTTCGTGTTGTCACTCACT-T--GAAG-A-----TAA-----CGTTTTGT---AATGGATGTAACGTTTG--ATC-AGT-GAGTCAATACAG-AT--GATGAGAATTA--ATTTCATTTCTA--GAACATAGT---AGA-G-ACATA-TTTTTT-GA--CGAGGTT---AA-GGCTAAGAATGACGAGTCG-TCCGAAGTGGGTTGACGAGCAAGGTGACAAGGCGGACTAT----------------GGGC---AT------ACGG-AAT-----ACGC----------GATGCGGCATGGACG
gi|7 : ATTTACT----TAGGTTATT-ATGTGATTTT--AG---T-TGGGTTTT--TTTCTTCAAGAATTTTAAAAA-GGGCATTGTTGTAACGTGAAGGGTCAGTTAGTCTTGATAT--GTTTTTGTA--AATAGAATGCCAGCAAATGCATTGGCTTTTT-ATGCTT----TTGTACGA--CATATTGCCGCTA--TCAGAG-CAAT-CTCAATTTGATGTTTTTAAATTTTTT--ATAAGTTTGTATACTC-TCACCCTG-AATA------T-TCCAGTTAAATGCCCCAC----ATGTGTATATGATGT-CCTATCTAATTC-----CGTGTAAAA-AATA------------------T--TCTTTGCGCCATTTTCAGTCT-GTGATGC-GTTCCAATCGGTT--TTA-TGGATA--------TTAATAC-GAAAAGC-TTTCTAT-AGATTCA-TACAT-TTATCAAGGAAAATACATAGCATATGTAAA
gi|8 : TATTGATAATACAC--TTCA-------TTAT---TTTCAACAA-CTGA-ATTGGGGTG-AATGC----------AAAAT-GGG---------TAGAA-CAGCCCGAATGTTGTT---TACCGCGGT--TTCTTTTTATGACTTT--CA------GGTGAGGAATACAGTGCTGGATGTTTATATTA-CAGAAAAGAAAAA--ATGCTTTACCTTT---TGTCA-C-TTCGAAA-----TTTA-TTTAA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--TGCATACT--ACAATT-T-TTCA---CA--AA--TTCA-AAGAAA---TGTATA--GTTGC--AG--------TGA----------CG--TATTA-CGTCAC-T-GCAG---A---TAATAGT--GACGCAGT--GATT--CGG-TCGTT---GAGCGC-------CATA-TTGAg
gi|9 : aatattaattcaatgcttatatttatatttccggagagtaaactttATTGATAA-ACAA--TTCA-AAT---TTATGATTTTTAAGAAACTGA-ATTGGGGTGAAATGC----------AAACTGGGG---------TA-AA-CAGCCGGAATGCTG-T---TACCGCAGT--TTCTTTTTATAGCTTT--CG------AGTGAAGAATATAATGCTGGA-TTTTATATTATCAGAAAAG-AAAA--ATG-TTTACCTTTG--TGTCA-CTTTCGAAA-----TTTAGCTCTT---ATAA-AATT-TTAAGGT-T-TGAAAAAAGACAA--AGCAT-AT--A-GATT-T-TTCA---CAACAA--TTC--AAGAAA---TGTATA--GTTGTG-AG--------TGA----------CG--TTATAGCGTCAT-T-GTAG---A---TTGTAGT--GACGCA-T--GATT--GCG-TCGTT---GAGCGC-------T-CA-TTGA
Alignments
lowQualScore : 11 111 11 2222222222 222222222 111 111111 111 11111 111 111 111 11 22222222 2222222222 1111111 111 222222222222 2222 1 22222222 2222222 1111111 4444444444444444444444444 111 111 11111 111111 1 88888888888888888 33333333333333333333333333333333333333 1 11 1111 222222222 11 1111111 1111 11111111 111111 1111 11111 1111111 11111 66666666666666666666666 11 22222222 11
lowQualScore : 0 11 6 111 11 6 6 6 9999999999 6 666666666 6 111 2 99 99 999999 6 6 99 5 888 6 6 66666 6 111 6 5 5 5 5 0 77 888 0 99999999999 111 99 99 6 111 99 55 44444444 9999999999 99 6 9999 6666666 99 6 99 99 6 111 222222222222 1 8888 0 6 44444444 1111111 6 99 8888888 3333333333333333333333333 1 99 5 1 6 1 6 5 77 77 77 77 000 999 1 000 888 88888 22222 4 0 3 0 5 8 444444 5 1 22 6 5 6 1 22222222222222222 88888888888888888888888888888888888888 6 8 0 3 11 1 1 4444 1 6 99 666666666 99 1 11 8 1 6 5 5 77 77 4444444 5 66 5 0000 5 5 77 5 2 77 77 5 5 5 5 4 22222222 88888 5 888 5 666666 77 5 66 7777 44444 5 8888888 44444 6 11111111111111111111111 6 1 00 99 3 22222222 22 3 6 0 0 5
lowQualScore : . .. . ... .. . . . .......... . ......... . ... . .. .. ...... . . .. . ... . . ..... . ... . . . . . . .. ... . ........... ... .. .. . ... .. .. ........ .......... .. . .... ....... .. . .. .. . ... ............ . .... . . ........ ....... . .. ....... ......................... . .. . . . . . . .. .. .. .. ... ... . ... ... ..... ..... . . . . . . ...... . . .. . . . . ................. ...................................... . . . . .. . . .... . . .. ......... .. . .. . . . . . .. .. ....... . .. . .... . . .. . . .. .. . . . . . ........ ..... . ... . ...... .. . .. .... ..... . ....... ..... . ....................... . . .. .. . ........ .. . . . . .
lowQualScore : 8 00 7 777 00 7 7 7 2222222222 7 777777777 7 777 2 22 22 222222 7 7 22 7 333 7 7 77777 7 777 7 7 7 7 7 1 99 999 7 55555555555 777 22 22 7 777 22 88 22222222 2222222222 22 7 7777 8888888 22 7 22 22 7 777 888888888888 0 0000 0 7 22222222 7777777 7 22 7777777 3333333333333333333333333 0 22 2 0 7 0 7 7 99 99 99 99 000 666 7 000 666 77777 33333 3 7 6 7 7 9 444444 7 4 00 7 2 7 0 55555555555555555 00000000000000000000000000000000000000 7 0 0 2 00 0 4 2222 0 7 22 777777777 22 0 22 0 0 7 7 7 99 99 8888888 0 99 0 6666 0 0 99 7 7 99 99 7 7 7 7 9 33333333 00000 7 333 4 444444 99 7 44 9999 33333 7 6666666 33333 7 88888888888888888888888 7 0 33 22 2 55555555 66 2 7 8 8 0
consensus : TATTGATAATACAA--TTCA-AAT---TTATGATTTTTAACAA-CTGA-ATTGGGGTG-AATGC----------AAACT-GGG---------TAGAA-CAGCCGGAATGTTGTT---TACCGCGGT--TTCTTTTTATAGCTTT--CG------AGTGAAGAATATAGTGCTGGATTTTTATATTA-CAGAAAAG-AAAA--ATGTTTTACCTTT---TGTCA-C-TTCGAAA-----TTTA-TTCTA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--NGCATAAT--A-GNTT-T-TTCA---CA--AA--TTCA-AAGAAA---TGTATA--GTTGC--AG--------TGA----------CG--TAATA-CGTCA-NT-GTAG---A---TTGTA--GTGACGCAGT--GATT--CGG-TCGTT---GAGCG-------CCAT-ATTGAATGNTA---ATGTC-GAA-AGCA--------CGACACTTCGTG-------TCACT-T--GAAG-T-----TAA-----AG--GTGT---AATTGTTG-AACGTTTG--ACCCAGT-GAAGAGA-ACAG-AT--GAT--GGATTA--ATTC--TTT---GA--GAATAGA---AGA-C-AC-TA-TTTGTT-GA--CGAGGTTTTCAA-GGCTAAG-----TGAG-CG-CCAGGAACGGG-TGACGAGCAAGGTGACAAGG-GANCTA-----------------GGGC---AT------A-GG-AAT-----G-GC----------GA-GCGGCATGGACGG-TTGTTGGGGTAA-GTTAAAGAATTTGAGAAGAATATTTGCTTTTAGAT--CTGTANTGTTGTCATATTTACT----TNGGTTATT-ATGTGATTTT--AG---T-TN--TTTT--TTTCTTCAAGAATTTNGAAAA-GGGCATTG-TGTAACGTGAAGGGTCA-TTAGT-TTG-TAT--G--TTTGTA--A----AATG-CAGCAAA--CATTGGCTCTTT-ATGCTT----TT-TAC-A--CATA-TGCCGCTA--TC--AG-C-AT-CTCAATTTTA-GTTTTTAAA----TT--ATA--TACGTATA-TC-T-ACCCTGAAATA------TATCC--TT-AAT-CCCCAC----AT-----TATGATTT-CC-------TTC-----CCTGTGAAA-AATAA-TACCAC-----AAAAGT--TTCTTGCGCCA-TTTNAATCTGGTGATGCGGTTCTCGTCTGTG--TTATTGGATA-------TTTAATAC-GAAAAGCTTTTCTAT-ATATTCATTACATGTTATTAAGGAAAATACATAGCATATGTAAATATT
Reference ( family-8223 ) : TATTGATAATACAA--TTCA-AAT---TTATGATTTTTAACAA-CTGA-ATTGGGGTG-AATGC----------AAACT-GGG---------TAGAA-CAGCCGGAATGTTGTT---TACCGCGGT--TTCTTTTTATAGCTTT--CG------AGTGAAGAATATAGTGCTGGATTTTTATATTA-CAGAAAAG-AAAA--ATGTTTTACCTTT---TGTCA-C-TTCGAAA-----TTTA-TTCTA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--NGCATAAT--A-GNTT-T-TTCA---CA--AA--TTCA-AAGAAA---TGTATA--GTTGC--AG--------TGA----------CG--TAATA-CGTCA-NT-GTAG---A---TTGTA--GTGACGCAGT--GATT--CGG-TCGTT---GAGCG-------CCAT-ATTGAATGNTG---ATGTC-GAA-AGCA--------CGACACTTCGTG-------TCACT-T--GAAG-T-----TAA-----AG--GTGT---AATTGTTG-AACGTTTG--ACCCAGT-GAAGAGA-ACAG-AT--GAT--GGATTA--ATTC--TTT---GA--GAATAGA---AGA-C-AC-TA-TTTGTT-GA--CGAGGTTTTCAA-GGCTAAG-----TGAG-CG-CCAGGAACGGG-TGACGAGCAAGGTGACAAGG-GANCTA-----------------GGGC---AT------A-GG-AAT-----G-GC----------GA-GCGGCATGGACGG-TTGTTGGGGTAA-GTTAAAGAATTTGAGAAGAATATTTGCTTTTAGAT--CTGTANTGTTGTCATATTTACT----TNGGTTATT-ATGTGATTTT--AG---T-TN--TTTT--TTTCTTCAAGAATTTNGAAAA-GGGCATTG-TGTAACGTGAAGGGTCA-TTAGT-TTG-TAT--G--TTTGTA--A----AATG-CAGCAAA--CATTGGCTCTTT-ATGCTT----TT-TAC-A--CATA-TGCCGCTA--TC--AG-C-AT-CTCAATTTTA-GTTTTTAAA----TT--ATA--TACGTATA-TC-T-ACCCTGAAATA------TATCC--TT-AAT-CCCCAC----AT-----TATGATTT-CC-------TTC-----CCTGTGAAA-AATAA-TACCAC-----AAAAGT--TTCTTGCGCCA-TTTNAATCTGGTGATGCGGTTCTCGTCTGTG--TTATTGGATA-------TTTAATAC-GAAAAGCTTTTCTAT-ATATTCATTACATGTTATTAAGGAAAATACATAGCATATGTAAATATT
gi|1 : TATTGATAATACAA--TTCA-AAT---TTATAATTTTTAACAA--TGACATTGGGGTG-AATAC----------AAACT-GGG---------TAGAA-CAGCCGGTATGTTGTT---TAACGCGGT--TTCCTTTTATAGCTAT--CG------AGTGAAGAATATAGTGCTGGATTTTTATGTTA-CAGAAAAG-AAAA--CTGTTTTACCTCT---TGTCA-C-TTCGAAA-----TTTA-TTCTA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GTAA--AGCATAAT--A-GCTT-TGTTCA---CA--AA--TTCA-AAGAAA---TGTATA--GTTGC--AG--------TGA----------CG--TAATA-CGTCA-GT-GTAG---A---TTGTA--GTGACGCAGT--GATT--CGG-TCGTT---TAGCG-------CCAT-ATTGAATGCT----ATGTC-AAA-AGAA--------CGACACTTCGTG-------TCACC-T--GAAG-T-----TAA-----AG--GTAT---AATTGTTG-AATGTTT---ACCCAGT-GAAGAGA-ACAG-AT--GAT--GGATTA--ATTC--TTT---GA--GAATAGA---AGA-C-AC-TA-TTTGTT-CA--CGAGGTTTTCAA-GGCTAAG-----TGAG-CG-CCAGGAACAGG-TGACGAGCAAAGTGACAAGG-GATCTA-----------------GGGC---A-------A-GG-AAT-----G-TC----------GA-GCGGCATGGACGG-TTGTTGGGGTAA-TTTAAAGATTTTGAGAAGATTATTTGCTTTTAGAT--CTGGAATGTTCTCATATTGATT----TATGTTATT-ATGTGATTTT--AG---T-TT--TTTT--CTTCTTCAAGAATTTAGAAAG-GGGCATTG-TGTAACGTGAAGGGTCA-TTAAT-TTG-TAT--G--TTTGTA--A----AATG-CAGCAAA--CATTGGCTCTTT-ATGCTT----TT-TAC-A--CATA-TGCCACGA--TC--AG-C-AT-CTTAATTTTA-GTTTTTAAA----TT--ATA--TATGTATA-TC-T-ACCCTGAAATG------TATCC--TT-AAT-CCACAC----AT-----TCTGATTT-CC-------TTC-----CCTGAGAAA-AATAA-TAGCAC-----AAAAGTG-TCCTTGCGCCA-TTTGAATCTGGTGATGCGGTTCTCGTCTGCG--TTATTGGATA-------TTTAATAC-AAAACACTTTTCTAT-ATATGCATTGAATGTTATTAAGAAAAATACATAGCATATGTAAATATT
gi|10 : TTG-TGTAACGTGAAGGGTCA-TTAGT-TTG-TAT--G--TTTGTATAA----AATG-CAGCAAA--CATTGGCTTTTT-ATGCTT----TT-TAC-A--CATA-TGCCGCTA--TC--AG-C-AC-CTCAATTTTA-GTTTTTAAA----TTAAATA--TATGTATA-TC-C-ACCCTGAATTA------TATCC--TT-AAT-ACCCACATATAT-----TATGATTT-CC-------TTCTAATTCCTGTGAAA-AATA---------------------TTCTTGCGCCA-TTTCAATCTGGTGATGCGGTTCTCATCTGTG--TTAGTGGATA-------TCTAATACAAAAAAGCTTTTCTAT-ATATTCATTACATTTTATCAAGGAAAATACATAGCATATGTA
gi|11 : TAGT-TTG-TATCTG--TTTGTA--A----AATG-CAGCAAA--CATTGGCTTTTT-ATGTTTATGTTT-TAC-A--CATA-TGTCACTA--TC--AG-C-AC-CTCAATTTTA-GTT----------------------GTATA-TC-A-ACCCTGAAATAGGCCCATATCC--TT-AAT-CCCCAC----AT-----TATGATTT-TC-------TTC-----CTCGTGAAA-AA--A-TACCAC-----AAACGTA-TTCTTGCGCCA-TTTAAATCTGGTGATGTGGTTCTC---CGTG--TTATTGAATA-------TTTAATAC-AAAAAGATTTTCTATGAT-TTCATTACATGTTATTAAGGAAAATATCTAGCATAT
gi|12 : cTATTGATAATACAA--TTCA-AAT---TTATGATTTTTAAGAA-CTGA-ATTGGGGTG-AATGC----------AAACT-GGG---------TAGAA-CAGCCGGAATGCTGTT---TACCGCAGT--TTCTTTTTATAGCTTT--CG------AGTGAAGAATATAATGCTGGATTTTTATATTA-CAGAAAAG-AAAA--ATGTTTTACCTTT---TGTCA-C-TTCGAAA-----TTTA-CTCTT---ATAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--AGCATAt
gi|13 : catatatttacattttcagagagtacaatttTA--T----AACG-TAGCAAA--CATTGGCTC-----TG-TT----TT-TAC-ATTC-TA-TGCCCCCACTTT--AG-C-AT-CTCAGTTT
gi|14 : tttatttattttgtgattactttttatttgtatttaagaactttagaaagcgacatgttataccacacgaaaaaacaaccctttgcgtaacagctgtgaagtataagattgcattttattcgttgtcttagtcatgagataaaaacaCAC-AT--GAT--GGATTA--ATTC--TTT---AA--GAGT--------------------TGTT-GA--CGAGATTTTGAA-GGCTTGG-----TGAG-CA-CCGGGAACGGG-TGGCAAGCAAGGTGACAAGG-GAACTAGTGACACATC-------GGGCGTGAT------A-GG-GGTGGCAAG-GC----------GA-GCGGCATGGACAT-TTGT
gi|15 : AAAAGCGTTTCTAT-ATATTCGTTACATGCTATTAAGGAAAATACATGGCATATGTAAATATT
gi|16 : ctgcctaatggtagacaaccgacataGTTTTTAGAT--CTGTAGTATTATCATATTCACT----TTGACTATT-ATGTAATTTT--AG------G--GTGT--TTTAATCAAGAATTagt
gi|17 : ATTTTA-GTTTTTAAG----GT--ATA--TA-------TC-T-ACCCTGAA--A------TATCT--TT-AAT-CCCCCC----AT-----TGTG--TT-TC-------TTC-----
gi|18 : GGGCAA-TTAGT-TTG-TTA--G--TTTGTA--A----AATG-CATCAAA--CATTGGTTCTTT-ATGCTT----TT-TAC-ttgt
gi|2 : -AAT---TTATCATTTTTAACAA-CTGA-ATTAGGGTG-AATGC----------AAACT-GGG---------TAGAA-CAGCCAGAATGGTGTT---TACCGTAGT--TTCTTTTTATAGCTCT--CG------GGTGAAGAATATAGTGCTGGATTTTTAAGTTA-CAGAAAAG--AAA--ATAGTTTACCTTT---TGTAA-C-TTCGAAA-----TTCA-TTTTA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--AGCATAATAAA-ACAC-G-TTCA---CA--AA--TTCA-AAGAAA---TGCATA--GATGC--GG--------TGA----------CG--TATTA-TGTCA-TTGGTAG---A---TTGTA--ATGACGCAGT--GATC--CGG-TCGTT---GAGTG-------CCAT-ATTGAATGCTATACATATA-GAT-AGCA--------CGACACTTCGTG-------TCACT-T--CAAG-T-----TAA-----AG--GTGT---AATTGTTG-AACG-TTG--ACCCAAT-GAATAGA-CCAG-AT--GAT--GGATTA--ATTC--TTT---GA--GAATTGA---AGA-C-AC-TA----GTT-G---C------------------------TGAG-CG-CCAGGAACCGG-TGACGAGCAAGGTGACAAGG-GAACTAGACCCTAGTGACAAATCGGGC---GTGCAATCA-GGTGAT-----G-GCAAGGAATGATGA-ACGGCATGGACGG-TCGTCGGGGTAA-GTAAAAGAATTTGAGAAGAATATTTGCTTTTAGAT--CTGTAGTGTTATCGTATTTACTTTAATAGGCTATT-ATGTAATTTT--AG---TGGG--TTTT--TTTCATCAAGAATTTAGAAA
gi|3 : ATTTAAAATACAAGATTCATAATACTCTATA--TTCTATCAA-CAAA-ACTGGAGAG-ATTGTTGGTAGCATAAAGCT-GAGAGTTCATAATAGAAACAGCCGAAATGTTGTTTGCTACCGCTGCTATTCTTTTTATAGCTTCAACGGTATAAAGTAAGTAGTTTAGTGTCTCATTATCACCTT----TAAAGG-AAAAATATGTTTAACCTTTATCTGTCACC-TTCGAAAGAGCCTGCA-GTCTATATGTAATTATTGTTAG-GT-TGTAAAAGA--GCAATTTGAATAAT--A-GATTAT-TTCAGTGCA--GAATTTCAGAAGAAA---TGTATA---CTGC--AGGAGCGTATTAA----------CGTCTAACA-AGTTA-GA-ATAGATAA---TTGTC--G----GCA-T--GATTTACGGTTCGTGCCAGAGCT-------CGA--AATAAAAGAGA---AAGTC-GAAGAGCG--------AGACACTT-ATA-------TCACTGTTAGAAG-TAATTCTGACATTTAG--GTGTAGAAATTATTC-AA-GTTTG--ATCCA-T-GAAAAGA-AGAGTATCAGAT--AGATTACGATTA--CTT---GA---AATAGAGACAGATC-AC--A-TTTGTT--ATTCGA-GTTCTCGACAGC-AAG------GAG-CGACCAGGAg
gi|4 : agatataaattcaaatgctcaattacgttattaacatcatccgaaagagtaaaaatactgtcatta-AGCA--------CGGCTCTTCGTG-------TCACT-T--GAAG-T-----TAA-----AG-------------------ACGTT-G--AACCAGT-GAAGAGA-ACAG-AT--GAT--GGATTT--ATTC--TTT---GA--GAATAGA---AAA-C-AC-TA-TTTGCT-GA--CGAGGTTTTCAA-GGCAAAG-----TGAG-CG-CCAGGAACGGG-TGAC------------AAGG-GATCTA-----------------GGGC---A-------A-GG-AAT-----G-AC----------AA-GCGGCATGGGCGG-TTGTTGGGGTAA-GTTAAAGAATTTGAGAAGAATATTTGCTTTTATAT--CTGTACTGTTGTCATATTTACT----TTGGTTGTT-ATGTGATTTT--AG---T-TT--TTTTTTTTTCTTCAAGAATTTCGAAAT-GGGCATTG-TGTAACGTGAAGGGTTA-TTAGT-TTG-TAT--G--TTTGTA--A----AATG-CAGCAAA--CATTGGCTCTTT-ATGCTT----TT-TAC-A--CATA-TGTCACTA--TC--AG-C-AT-CTCAATTTTA-GTTGTTAAA----TT--ATA--TACGTATA-TC-T-AACCTGAAATA------TATCC--TT-AAT-CCCCAC----AT-----TATGATTT-CC-------TTC-----CCTGTGAAA-AAAAATTACCAC-----AAAAGTC-TTCTTGCGCCA-TTTTAATCTGGTGATGCGGTCCTCGTCTGTG--TTATTGGATAACCAGGTTTTGATAT-TAA---CTTTT-TAT-
gi|5 : A-AGCA--------CGGCG-TTCGTG-------GTA-T-T--GAAGGT-----TAA-----AA--G----------------ACGTTTGGAACCCAGTTGAAGAGA-ACAG-AT--GAT--G-ATTT--ATTC--TTT---GATGAAATAGA---AAA-CCAC-TAATTTGCTCGA--C-AGGTTTTCAA-GGCAAAG-----TGAG-CGGCCAGGAA---------------GGTGACAAGG-GATCTA-----------------GGGC---AA------G-GG-AAT-----G-AC----------AA-GCGGCATGGGCGGGTTGGTTGGGTAAAGTTAA-GAATTTGAGAAGAATATTTGCTTTTATATATCTGTACTGTTGTCATATTTACT----TTGGTTGTTTATGTGACTTTTAAGCTTT-TT--TTTT--TTTCTTCAAGAAATTCGAAAATGGGCATTG-TGTAACGTGAAGGATAT-TTAGT-TTG-TAT--G--TTTGTA--C----AATG-CAGCAAA--CATTGGCTCTTTAATGCTT----TT-ACC-A--CATA-T-TCACTA--TC--AGCC-ATACTC-ATTTTA-GTTGTTAAA----TT--ATA--TACGTATA-TCTT-AACCTGAATGA------TATCC--TT-AAT--CCCACA---AT-----TATGATTTCCC-------TTC-----CCTGTGAAACAAAAA-AATTACAAACAAAAAGTCCTTCTTGCGCCA-TTTTTATCTGGTGATGCGGTCCT--TCTGTGGCTTATTGGATA-------ttctgc
gi|6 : T-CTAA-GTAT-TGAAA----GCAA--TG-ATAAT--G-ATGT-T-TTCA---CA--AA---TCA-AAGAAAATTTGTATAATGTTGCTTAG--------TGAGACTAGGTATTA--TAAGA-TGTCAGCT-GTAG---GATTTTGTAATATGAATCTGTTGGGGT--CGG-TGGGT---GAGCGGGGGTGAATATAATTGAATTATG---ATGTCTGAA-ATCAGCTCAAGTTGACACTTCGTGTTGTCACTCACT-T--GAAG-A-----TAA-----CGTTTTGT---AATGGATGTAACGTTTG--A-TCAGT-GAGTCAATACAG-AT--GATGAGAATTA--ATTTCATTTCTAGA--ACATAGT---AGA-G-ACATA-TTTTTT-GA--CGAGGTT---AA-GGCTAAGAATGACGAGTCG-TCCGAAGTGGGTTGACGAGCAAGGTGACAAGGCGGACTAT----------------GGGC---AT------ACGG-AAT-----ACGC----------GATGCGGCATGGACG
gi|7 : ATTTACT----TAGGTTATT-ATGTGATTTT--AG---T-TGGGTTTT--TTTCTTCAAGAATTTTAAAAA-GGGCATTGTTGTAACGTGAAGGGTCAGTTAGTCTTGATAT--GTTTTTGTA--AATAGAATGCCAGCAAATGCATTGGCTTTTT-ATGCTT----TTGTACGA--CATATTGCCGCTA--TCAGAG-CAAT-CTCAATTTGATGTTTTTAAATTTTTT--ATAAGTTTGTATACTC-TCACCCTG-AATA------T-TCCAGTTAAATGCCCCAC----ATGTGTATATGATGT-CCTATCTAATTC-----CGTGTAAAA-AATA------------------T--TCTTTGCGCCATTTTCAGTCT-GTGATGC-GTTCCAATCGGTT--TTA-TGGATA--------TTAATAC-GAAAAGC-TTTCTAT-AGATTCA-TACAT-TTATCAAGGAAAATACATAGCATATGTAAA
gi|8 : TATTGATAATACAC--TTCA-------TTAT---TTTCAACAA-CTGA-ATTGGGGTG-AATGC----------AAAAT-GGG---------TAGAA-CAGCCCGAATGTTGTT---TACCGCGGT--TTCTTTTTATGACTTT--CA------GGTGAGGAATACAGTGCTGGATGTTTATATTA-CAGAAAAGAAAAA--ATGCTTTACCTTT---TGTCA-C-TTCGAAA-----TTTA-TTTAA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--TGCATACT--ACAATT-T-TTCA---CA--AA--TTCA-AAGAAA---TGTATA--GTTGC--AG--------TGA----------CG--TATTA-CGTCA-CT-GCAG---A---TAATA--GTGACGCAGT--GATT--CGG-TCGTT---GAGCG-------CCAT-ATTGAg
gi|9 : aatattaattcaatgcttatatttatatttccggagagtaaactttATTGATAA-ACAA--TTCA-AAT---TTATGATTTTTAAGAAACTGA-ATTGGGGTGAAATGC----------AAACTGGGG---------TA-AA-CAGCCGGAATGCTG-T---TACCGCAGT--TTCTTTTTATAGCTTT--CG------AGTGAAGAATATAATGCTGGA-TTTTATATTATCAGAAAAG-AAAA--ATG-TTTACCTTTG--TGTCA-CTTTCGAAA-----TTTAGCTCTT---ATAA-AATT-TTAAGGT-T-TGAAAAAAGACAA--AGCAT-AT--A-GATT-T-TTCA---CAACAA--TTC--AAGAAA---TGTATA--GTTGTG-AG--------TGA----------CG--TTATAGCGTCA-TT-GTAG---A---TTGTA--GTGACGCA-T--GATT--GCG-TCGTT---GAGCG-------CT-C-ATTGA
Alignments
lowQualScore : 11 111 11 2222222222 222222222 111 111111 111 11111 111 111 111 11 22222222 2222222222 1111111 111 222222222222 2222 1 22222222 2222222 1111111 4444444444444444444444444 111 111 11111 111111 1 88888888888888888 33333333333333333333333333333333333333 1 11 1111 222222222 11 1111111 1111 11111111 111111 1111 11111 1111111 11111 66666666666666666666666 11 22222222 11
lowQualScore : 0 11 6 111 11 6 6 6 9999999999 6 666666666 6 111 2 99 99 999999 6 6 99 5 888 6 6 66666 6 111 6 5 5 5 5 0 77 888 0 99999999999 111 99 99 6 111 99 55 44444444 9999999999 99 6 9999 6666666 99 6 99 99 6 111 222222222222 1 0000 0 6 44444444 1111111 6 99 8888888 3333333333333333333333333 1 99 5 1 6 1 6 5 77 77 77 77 000 999 1 000 888 88888 22222 4 0 3 0 5 8 444444 5 1 22 6 5 6 1 22222222222222222 88888888888888888888888888888888888888 6 8 0 3 11 1 1 4444 1 6 99 666666666 99 1 11 8 1 6 5 5 77 77 4444444 5 66 5 0000 5 5 77 5 2 77 77 5 5 5 5 4 22222222 88888 5 888 5 666666 77 5 66 7777 44444 5 8888888 44444 6 11111111111111111111111 6 1 00 99 3 22222222 22 3 6 0 0 5
lowQualScore : . .. . ... .. . . . .......... . ......... . ... . .. .. ...... . . .. . ... . . ..... . ... . . . . . . .. ... . ........... ... .. .. . ... .. .. ........ .......... .. . .... ....... .. . .. .. . ... ............ . .... . . ........ ....... . .. ....... ......................... . .. . . . . . . .. .. .. .. ... ... . ... ... ..... ..... . . . . . . ...... . . .. . . . . ................. ...................................... . . . . .. . . .... . . .. ......... .. . .. . . . . . .. .. ....... . .. . .... . . .. . . .. .. . . . . . ........ ..... . ... . ...... .. . .. .... ..... . ....... ..... . ....................... . . .. .. . ........ .. . . . . .
lowQualScore : 8 00 7 777 00 7 7 7 2222222222 7 777777777 7 777 2 22 22 222222 7 7 22 7 333 7 7 77777 7 777 7 7 7 7 7 1 99 999 7 55555555555 777 22 22 7 777 22 88 22222222 2222222222 22 7 7777 8888888 22 7 22 22 7 777 888888888888 0 8888 0 7 22222222 7777777 7 22 7777777 3333333333333333333333333 0 22 2 0 7 0 7 7 99 99 99 99 000 666 7 000 666 77777 33333 3 7 6 7 7 9 444444 7 4 00 7 2 7 0 55555555555555555 00000000000000000000000000000000000000 7 0 0 2 00 0 4 2222 0 7 22 777777777 22 0 22 0 0 7 7 7 99 99 8888888 0 99 0 6666 0 0 99 7 7 99 99 7 7 7 7 9 33333333 00000 7 333 4 444444 99 7 44 9999 33333 7 6666666 33333 7 88888888888888888888888 7 0 33 22 2 55555555 66 2 7 8 8 0
consensus : TATTGATAATACAA--TTCA-AAT---TTATGATTTTTAACAA-CTGA-ATTGGGGTG-AATGC----------AAACT-GGG---------TAGAA-CAGCCGGAATGTTGTT---TACCGCGGT--TTCTTTTTATAGCTTT--CG------AGTGAAGAATATAGTGCTGGATTTTTATATTA-CAGAAAAG-AAAA--ATGTTTTACCTTT---TGTCA-C-TTCGAAA-----TTTA-TTCTA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--NGCATAAT--A-GNTT-T-TTCA---CA--AA--TTCA-AAGAAA---TGTATA--GTTGC--AG--------TGA----------CG--TAATA-CGTCA-NT-GTAG---A---TTGTA--GTGACGCAGT--GATT--CGG-TCGTT---GAGCG-------CCAT-ATTGAATGNTA---ATGTC-GAA-AGCA--------CGACACTTCGTG-------TCACT-T--GAAG-T-----TAA-----AG--GTGT---AATTGTTG-AACGTTTG--ACCCAGT-GAAGAGA-ACAG-AT--GAT--GGATTA--ATTC--TTT---GA--GAATAGA---AGA-C-AC-TA-TTTGTT-GA--CGAGGTTTTCAA-GGCTAAG-----TGAG-CG-CCAGGAACGGG-TGACGAGCAAGGTGACAAGG-GANCTA-----------------GGGC---AT------A-GG-AAT-----G-GC----------GA-GCGGCATGGACGG-TTGTTGGGGTAA-GTTAAAGAATTTGAGAAGAATATTTGCTTTTAGAT--CTGTANTGTTGTCATATTTACT----TNGGTTATT-ATGTGATTTT--AG---T-TN--TTTT--TTTCTTCAAGAATTTNGAAAA-GGGCATTG-TGTAACGTGAAGGGTCA-TTAGT-TTG-TAT--G--TTTGTA--A----AATG-CAGCAAA--CATTGGCTCTTT-ATGCTT----TT-TAC-A--CATA-TGCCGCTA--TC--AG-C-AT-CTCAATTTTA-GTTTTTAAA----TT--ATA--TACGTATA-TC-T-ACCCTGAAATA------TATCC--TT-AAT-CCCCAC----AT-----TATGATTT-CC-------TTC-----CCTGTGAAA-AATAA-TACCAC-----AAAAGT--TTCTTGCGCCA-TTTNAATCTGGTGATGCGGTTCTCGTCTGTG--TTATTGGATA-------TTTAATAC-GAAAAGCTTTTCTAT-ATATTCATTACATGTTATTAAGGAAAATACATAGCATATGTAAATATT
Reference ( family-8223 ) : TATTGATAATACAA--TTCA-AAT---TTATGATTTTTAACAA-CTGA-ATTGGGGTG-AATGC----------AAACT-GGG---------TAGAA-CAGCCGGAATGTTGTT---TACCGCGGT--TTCTTTTTATAGCTTT--CG------AGTGAAGAATATAGTGCTGGATTTTTATATTA-CAGAAAAG-AAAA--ATGTTTTACCTTT---TGTCA-C-TTCGAAA-----TTTA-TTCTA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--NGCATAAT--A-GNTT-T-TTCA---CA--AA--TTCA-AAGAAA---TGTATA--GTTGC--AG--------TGA----------CG--TAATA-CGTCA-NT-GTAG---A---TTGTA--GTGACGCAGT--GATT--CGG-TCGTT---GAGCG-------CCAT-ATTGAATGNTA---ATGTC-GAA-AGCA--------CGACACTTCGTG-------TCACT-T--GAAG-T-----TAA-----AG--GTGT---AATTGTTG-AACGTTTG--ACCCAGT-GAAGAGA-ACAG-AT--GAT--GGATTA--ATTC--TTT---GA--GAATAGA---AGA-C-AC-TA-TTTGTT-GA--CGAGGTTTTCAA-GGCTAAG-----TGAG-CG-CCAGGAACGGG-TGACGAGCAAGGTGACAAGG-GANCTA-----------------GGGC---AT------A-GG-AAT-----G-GC----------GA-GCGGCATGGACGG-TTGTTGGGGTAA-GTTAAAGAATTTGAGAAGAATATTTGCTTTTAGAT--CTGTANTGTTGTCATATTTACT----TNGGTTATT-ATGTGATTTT--AG---T-TN--TTTT--TTTCTTCAAGAATTTNGAAAA-GGGCATTG-TGTAACGTGAAGGGTCA-TTAGT-TTG-TAT--G--TTTGTA--A----AATG-CAGCAAA--CATTGGCTCTTT-ATGCTT----TT-TAC-A--CATA-TGCCGCTA--TC--AG-C-AT-CTCAATTTTA-GTTTTTAAA----TT--ATA--TACGTATA-TC-T-ACCCTGAAATA------TATCC--TT-AAT-CCCCAC----AT-----TATGATTT-CC-------TTC-----CCTGTGAAA-AATAA-TACCAC-----AAAAGT--TTCTTGCGCCA-TTTNAATCTGGTGATGCGGTTCTCGTCTGTG--TTATTGGATA-------TTTAATAC-GAAAAGCTTTTCTAT-ATATTCATTACATGTTATTAAGGAAAATACATAGCATATGTAAATATT
gi|1 : TATTGATAATACAA--TTCA-AAT---TTATAATTTTTAACAA--TGACATTGGGGTG-AATAC----------AAACT-GGG---------TAGAA-CAGCCGGTATGTTGTT---TAACGCGGT--TTCCTTTTATAGCTAT--CG------AGTGAAGAATATAGTGCTGGATTTTTATGTTA-CAGAAAAG-AAAA--CTGTTTTACCTCT---TGTCA-C-TTCGAAA-----TTTA-TTCTA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GTAA--AGCATAAT--A-GCTT-TGTTCA---CA--AA--TTCA-AAGAAA---TGTATA--GTTGC--AG--------TGA----------CG--TAATA-CGTCA-GT-GTAG---A---TTGTA--GTGACGCAGT--GATT--CGG-TCGTT---TAGCG-------CCAT-ATTGAATGCTA----TGTC-AAA-AGAA--------CGACACTTCGTG-------TCACC-T--GAAG-T-----TAA-----AG--GTAT---AATTGTTG-AATGTTT---ACCCAGT-GAAGAGA-ACAG-AT--GAT--GGATTA--ATTC--TTT---GA--GAATAGA---AGA-C-AC-TA-TTTGTT-CA--CGAGGTTTTCAA-GGCTAAG-----TGAG-CG-CCAGGAACAGG-TGACGAGCAAAGTGACAAGG-GATCTA-----------------GGGC---A-------A-GG-AAT-----G-TC----------GA-GCGGCATGGACGG-TTGTTGGGGTAA-TTTAAAGATTTTGAGAAGATTATTTGCTTTTAGAT--CTGGAATGTTCTCATATTGATT----TATGTTATT-ATGTGATTTT--AG---T-TT--TTTT--CTTCTTCAAGAATTTAGAAAG-GGGCATTG-TGTAACGTGAAGGGTCA-TTAAT-TTG-TAT--G--TTTGTA--A----AATG-CAGCAAA--CATTGGCTCTTT-ATGCTT----TT-TAC-A--CATA-TGCCACGA--TC--AG-C-AT-CTTAATTTTA-GTTTTTAAA----TT--ATA--TATGTATA-TC-T-ACCCTGAAATG------TATCC--TT-AAT-CCACAC----AT-----TCTGATTT-CC-------TTC-----CCTGAGAAA-AATAA-TAGCAC-----AAAAGTG-TCCTTGCGCCA-TTTGAATCTGGTGATGCGGTTCTCGTCTGCG--TTATTGGATA-------TTTAATAC-AAAACACTTTTCTAT-ATATGCATTGAATGTTATTAAGAAAAATACATAGCATATGTAAATATT
gi|10 : TTG-TGTAACGTGAAGGGTCA-TTAGT-TTG-TAT--G--TTTGTATAA----AATG-CAGCAAA--CATTGGCTTTTT-ATGCTT----TT-TAC-A--CATA-TGCCGCTA--TC--AG-C-AC-CTCAATTTTA-GTTTTTAAA----TTAAATA--TATGTATA-TC-C-ACCCTGAATTA------TATCC--TT-AAT-ACCCACATATAT-----TATGATTT-CC-------TTCTAATTCCTGTGAAA-AATA---------------------TTCTTGCGCCA-TTTCAATCTGGTGATGCGGTTCTCATCTGTG--TTAGTGGATA-------TCTAATACAAAAAAGCTTTTCTAT-ATATTCATTACATTTTATCAAGGAAAATACATAGCATATGTA
gi|11 : TAGT-TTG-TATCTG--TTTGTA--A----AATG-CAGCAAA--CATTGGCTTTTT-ATGTTTATGTTT-TAC-A--CATA-TGTCACTA--TC--AG-C-AC-CTCAATTTTA-GTT----------------------GTATA-TC-A-ACCCTGAAATAGGCCCATATCC--TT-AAT-CCCCAC----AT-----TATGATTT-TC-------TTC-----CTCGTGAAA-AA--A-TACCAC-----AAACGTA-TTCTTGCGCCA-TTTAAATCTGGTGATGTGGTTCTC---CGTG--TTATTGAATA-------TTTAATAC-AAAAAGATTTTCTATGAT-TTCATTACATGTTATTAAGGAAAATATCTAGCATAT
gi|12 : cTATTGATAATACAA--TTCA-AAT---TTATGATTTTTAAGAA-CTGA-ATTGGGGTG-AATGC----------AAACT-GGG---------TAGAA-CAGCCGGAATGCTGTT---TACCGCAGT--TTCTTTTTATAGCTTT--CG------AGTGAAGAATATAATGCTGGATTTTTATATTA-CAGAAAAG-AAAA--ATGTTTTACCTTT---TGTCA-C-TTCGAAA-----TTTA-CTCTT---ATAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--AGCATAt
gi|13 : catatatttacattttcagagagtacaatttTA--T----AACG-TAGCAAA--CATTGGCTC-----TG-TT----TT-TAC-ATTC-TA-TGCCCCCACTTT--AG-C-AT-CTCAGTTT
gi|14 : tttatttattttgtgattactttttatttgtatttaagaactttagaaagcgacatgttataccacacgaaaaaacaaccctttgcgtaacagctgtgaagtataagattgcattttattcgttgtcttagtcatgagataaaaacaCAC-AT--GAT--GGATTA--ATTC--TTT---AA--GAGT--------------------TGTT-GA--CGAGATTTTGAA-GGCTTGG-----TGAG-CA-CCGGGAACGGG-TGGCAAGCAAGGTGACAAGG-GAACTAGTGACACATC-------GGGCGTGAT------A-GG-GGTGGCAAG-GC----------GA-GCGGCATGGACAT-TTGT
gi|15 : AAAAGCGTTTCTAT-ATATTCGTTACATGCTATTAAGGAAAATACATGGCATATGTAAATATT
gi|16 : ctgcctaatggtagacaaccgacataGTTTTTAGAT--CTGTAGTATTATCATATTCACT----TTGACTATT-ATGTAATTTT--AG------G--GTGT--TTTAATCAAGAATTagt
gi|17 : ATTTTA-GTTTTTAAG----GT--ATA--TA-------TC-T-ACCCTGAA--A------TATCT--TT-AAT-CCCCCC----AT-----TGTG--TT-TC-------TTC-----
gi|18 : GGGCAA-TTAGT-TTG-TTA--G--TTTGTA--A----AATG-CATCAAA--CATTGGTTCTTT-ATGCTT----TT-TAC-ttgt
gi|2 : -AAT---TTATCATTTTTAACAA-CTGA-ATTAGGGTG-AATGC----------AAACT-GGG---------TAGAA-CAGCCAGAATGGTGTT---TACCGTAGT--TTCTTTTTATAGCTCT--CG------GGTGAAGAATATAGTGCTGGATTTTTAAGTTA-CAGAAAAG--AAA--ATAGTTTACCTTT---TGTAA-C-TTCGAAA-----TTCA-TTTTA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--AGCATAATAAA-ACAC-G-TTCA---CA--AA--TTCA-AAGAAA---TGCATA--GATGC--GG--------TGA----------CG--TATTA-TGTCA-TTGGTAG---A---TTGTA--ATGACGCAGT--GATC--CGG-TCGTT---GAGTG-------CCAT-ATTGAATGCTATACATATA-GAT-AGCA--------CGACACTTCGTG-------TCACT-T--CAAG-T-----TAA-----AG--GTGT---AATTGTTG-AACG-TTG--ACCCAAT-GAATAGA-CCAG-AT--GAT--GGATTA--ATTC--TTT---GA--GAATTGA---AGA-C-AC-TA----GTT-G---C------------------------TGAG-CG-CCAGGAACCGG-TGACGAGCAAGGTGACAAGG-GAACTAGACCCTAGTGACAAATCGGGC---GTGCAATCA-GGTGAT-----G-GCAAGGAATGATGA-ACGGCATGGACGG-TCGTCGGGGTAA-GTAAAAGAATTTGAGAAGAATATTTGCTTTTAGAT--CTGTAGTGTTATCGTATTTACTTTAATAGGCTATT-ATGTAATTTT--AG---TGGG--TTTT--TTTCATCAAGAATTTAGAAA
gi|3 : ATTTAAAATACAAGATTCATAATACTCTATA--TTCTATCAA-CAAA-ACTGGAGAG-ATTGTTGGTAGCATAAAGCT-GAGAGTTCATAATAGAAACAGCCGAAATGTTGTTTGCTACCGCTGCTATTCTTTTTATAGCTTCAACGGTATAAAGTAAGTAGTTTAGTGTCTCATTATCACCTT----TAAAGG-AAAAATATGTTTAACCTTTATCTGTCACC-TTCGAAAGAGCCTGCA-GTCTATATGTAATTATTGTTAG-GT-TGTAAAAGA--GCAATTTGAATAAT--A-GATTAT-TTCAGTGCA--GAATTTCAGAAGAAA---TGTATA---CTGC--AGGAGCGTATTAA----------CGTCTAACA-AGTTA-GA-ATAGATAA---TTGTC--G----GCA-T--GATTTACGGTTCGTGCCAGAGCT-------CGA--AATAAAAGAGA---AAGTC-GAAGAGCG--------AGACACTT-ATA-------TCACTGTTAGAAG-TAATTCTGACATTTAG--GTGTAGAAATTATTC-AA-GTTTG--ATCCA-T-GAAAAGA-AGAGTATCAGAT--AGATTACGATTA--CTT---GA---AATAGAGACAGATC-AC--A-TTTGTT--ATTCGA-GTTCTCGACAGC-AAG------GAG-CGACCAGGAg
gi|4 : agatataaattcaaatgctcaattacgttattaacatcatccgaaagagtaaaaatactgtcatta-AGCA--------CGGCTCTTCGTG-------TCACT-T--GAAG-T-----TAA-----AG-------------------ACGTT-G--AACCAGT-GAAGAGA-ACAG-AT--GAT--GGATTT--ATTC--TTT---GA--GAATAGA---AAA-C-AC-TA-TTTGCT-GA--CGAGGTTTTCAA-GGCAAAG-----TGAG-CG-CCAGGAACGGG-TGAC------------AAGG-GATCTA-----------------GGGC---A-------A-GG-AAT-----G-AC----------AA-GCGGCATGGGCGG-TTGTTGGGGTAA-GTTAAAGAATTTGAGAAGAATATTTGCTTTTATAT--CTGTACTGTTGTCATATTTACT----TTGGTTGTT-ATGTGATTTT--AG---T-TT--TTTTTTTTTCTTCAAGAATTTCGAAAT-GGGCATTG-TGTAACGTGAAGGGTTA-TTAGT-TTG-TAT--G--TTTGTA--A----AATG-CAGCAAA--CATTGGCTCTTT-ATGCTT----TT-TAC-A--CATA-TGTCACTA--TC--AG-C-AT-CTCAATTTTA-GTTGTTAAA----TT--ATA--TACGTATA-TC-T-AACCTGAAATA------TATCC--TT-AAT-CCCCAC----AT-----TATGATTT-CC-------TTC-----CCTGTGAAA-AAAAATTACCAC-----AAAAGTC-TTCTTGCGCCA-TTTTAATCTGGTGATGCGGTCCTCGTCTGTG--TTATTGGATAACCAGGTTTTGATAT-TAA---CTTTT-TAT-
gi|5 : A-AGCA--------CGGCG-TTCGTG-------GTA-T-T--GAAGGT-----TAA-----AA--G----------------ACGTTTGGAACCCAGTTGAAGAGA-ACAG-AT--GAT--G-ATTT--ATTC--TTT---GATGAAATAGA---AAA-CCAC-TAATTTGCTCGA--C-AGGTTTTCAA-GGCAAAG-----TGAG-CGGCCAGGAA---------------GGTGACAAGG-GATCTA-----------------GGGC---AA------G-GG-AAT-----G-AC----------AA-GCGGCATGGGCGGGTTGGTTGGGTAAAGTTAA-GAATTTGAGAAGAATATTTGCTTTTATATATCTGTACTGTTGTCATATTTACT----TTGGTTGTTTATGTGACTTTTAAGCTTT-TT--TTTT--TTTCTTCAAGAAATTCGAAAATGGGCATTG-TGTAACGTGAAGGATAT-TTAGT-TTG-TAT--G--TTTGTA--C----AATG-CAGCAAA--CATTGGCTCTTTAATGCTT----TT-ACC-A--CATA-T-TCACTA--TC--AGCC-ATACTC-ATTTTA-GTTGTTAAA----TT--ATA--TACGTATA-TCTT-AACCTGAATGA------TATCC--TT-AAT--CCCACA---AT-----TATGATTTCCC-------TTC-----CCTGTGAAACAAAAA-AATTACAAACAAAAAGTCCTTCTTGCGCCA-TTTTTATCTGGTGATGCGGTCCT--TCTGTGGCTTATTGGATA-------ttctgc
gi|6 : T-CTAA-GTAT-TGAAA----GCAA--TG-ATAAT--G-ATGT-T-TTCA---CA--AA---TCA-AAGAAAATTTGTATAATGTTGCTTAG--------TGAGACTAGGTATTA--TAAGA-TGTCAGCT-GTAG---GATTTTGTAATATGAATCTGTTGGGGT--CGG-TGGGT---GAGCGGGGGTGAATATAATTGAATTATG---ATGTCTGAA-ATCAGCTCAAGTTGACACTTCGTGTTGTCACTCACT-T--GAAG-A-----TAA-----CGTTTTGT---AATGGATGTAACGTTTG--A-TCAGT-GAGTCAATACAG-AT--GATGAGAATTA--ATTTCATTTCTAGA--ACATAGT---AGA-G-ACATA-TTTTTT-GA--CGAGGTT---AA-GGCTAAGAATGACGAGTCG-TCCGAAGTGGGTTGACGAGCAAGGTGACAAGGCGGACTAT----------------GGGC---AT------ACGG-AAT-----ACGC----------GATGCGGCATGGACG
gi|7 : ATTTACT----TAGGTTATT-ATGTGATTTT--AG---T-TGGGTTTT--TTTCTTCAAGAATTTTAAAAA-GGGCATTGTTGTAACGTGAAGGGTCAGTTAGTCTTGATAT--GTTTTTGTA--AATAGAATGCCAGCAAATGCATTGGCTTTTT-ATGCTT----TTGTACGA--CATATTGCCGCTA--TCAGAG-CAAT-CTCAATTTGATGTTTTTAAATTTTTT--ATAAGTTTGTATACTC-TCACCCTG-AATA------T-TCCAGTTAAATGCCCCAC----ATGTGTATATGATGT-CCTATCTAATTC-----CGTGTAAAA-AATA------------------T--TCTTTGCGCCATTTTCAGTCT-GTGATGC-GTTCCAATCGGTT--TTA-TGGATA--------TTAATAC-GAAAAGC-TTTCTAT-AGATTCA-TACAT-TTATCAAGGAAAATACATAGCATATGTAAA
gi|8 : TATTGATAATACAC--TTCA-------TTAT---TTTCAACAA-CTGA-ATTGGGGTG-AATGC----------AAAAT-GGG---------TAGAA-CAGCCCGAATGTTGTT---TACCGCGGT--TTCTTTTTATGACTTT--CA------GGTGAGGAATACAGTGCTGGATGTTTATATTA-CAGAAAAGAAAAA--ATGCTTTACCTTT---TGTCA-C-TTCGAAA-----TTTA-TTTAA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--TGCATACT--ACAATT-T-TTCA---CA--AA--TTCA-AAGAAA---TGTATA--GTTGC--AG--------TGA----------CG--TATTA-CGTCA-CT-GCAG---A---TAATA--GTGACGCAGT--GATT--CGG-TCGTT---GAGCG-------CCAT-ATTGAg
gi|9 : aatattaattcaatgcttatatttatatttccggagagtaaactttATTGATAA-ACAA--TTCA-AAT---TTATGATTTTTAAGAAACTGA-ATTGGGGTGAAATGC----------AAACTGGGG---------TA-AA-CAGCCGGAATGCTG-T---TACCGCAGT--TTCTTTTTATAGCTTT--CG------AGTGAAGAATATAATGCTGGA-TTTTATATTATCAGAAAAG-AAAA--ATG-TTTACCTTTG--TGTCA-CTTTCGAAA-----TTTAGCTCTT---ATAA-AATT-TTAAGGT-T-TGAAAAAAGACAA--AGCAT-AT--A-GATT-T-TTCA---CAACAA--TTC--AAGAAA---TGTATA--GTTGTG-AG--------TGA----------CG--TTATAGCGTCA-TT-GTAG---A---TTGTA--GTGACGCA-T--GATT--GCG-TCGTT---GAGCG-------CT-C-ATTGA
blockSeqs : GA T ACT GA A . A TGGTAGCATA G AGTTCATAA A TGC A TA AA GTATAA T A AT T ATC C T GAGCC G TAT T G G A G AG TTT AAAACACG GTG AC AT G ATT AT TT GAGCGTAT GACTAGGTAT TC G TTG ATAA AT G TG TA T CCA GGGGTGAATATA C TACA T G GCTCAAGT TTGTCAC G TA TAATTC CATTTAGGTGTAGAAATTATTC C GA C A T T T T CA GA CG CA CTA TGA T GAC TC TAAT ATT G T C T AATGAC T A CG T A C A GACCCTAGTGACAAATC GTGCAATCAGGTGATGGCAAGGAATGAT T G A A AT G A TTAA T T TA CTTTTT TT A AT T C G C A CT TT AATAG C TG A ATGT G G TT T G CT AG C A A T T TTTTTT AGTTT C TT T GGCCCA AG A GC ATAT GTGTA C TATCTAA TAATT C AAAAATTACAAACAAAAAGTCC T C CA GC G ACCAGGTT AA T G T
blockSeqs : . . . CA . . . . . . . . A . . . . . . G G . . . . . . . . . . . A AGATTAT . . . . . . G . . . . GCT GATT . G . . . . CCAT A A . . . . . . GT CGTTTTGTAATGGATGT C . T G . A . . . . . . . G A . CC ATAT CGA G C . A T . G CC . G . A GTGACACATC GTGATAGGGGTGGCAAGGC . . . A . G A . A . . TTGGG . C T . A . . . . . TAA . . . . . . . . A . . . . . . T TTAA TAT . TC A . . . A A . . . . . AAATTACCACAAAAGTC . A CG . T T A T . G
blockSeqs : . . . GA . . . . . . . . T . . . . . . T . . . . . . . . . . . . A ACAATTT . . . . . . . . . . . GA A . G . . . . CCAT A A . . . . . . T AGGTGTAATTGTTG C . A G . G . . . . . . . G A . C TAT GA G T . A T . . CG . G . T T ATACGGAATACGC . . . . . C G . T . . TGGG . C A . T . . . . . A . . . . . . . . C . . . . . . G GT TAC . C A . . . C . . . . . . ATACCACAAACGTA . T AA . T T T G . G
blockSeqs : . . . A . . . . . . . . G . . . . . . C . . . . . . . . . . . . T GATGTT . . . . . . . . . . . CT A . . . . . . CGA . . . . . T AAG C . C G . G . . . . . . . G A . C TA GA G T . T T . . TG . . . T . AAGGGAATGAC . . . C G . T . . TTT . T . A . . . . . T . . . . . . . . A . . . . . . G TT TAC . A T . . . C . . . . . . TAT . T C . T . G T . .
blockSeqs : . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . T AGATTT . . . . . . . . . . . TT A . . . . . . CTC . . . . . A AG . . . . . T . . . . . . . A A . G AT GA . . . . T . . . . . . A . AAGGAATGAC . . A . . G . C . . . . . A . . . . . . . . A . . . . . . T TT TA . T A . . . C . . . . . . TA . C . . . . .
blockSeqs : . . . . . A . . . . . . . . . . . G . . . . . . . . . . . A . . . . . . . . G . . . . . . . . . . T . . . . . . . . . .
blockSeqs : C . . . . . .
blockSeqCons : AGTGTAATGTG************** TAT** ATAGGAATGGC*************************** TTN****** ATACCAAAAGTN***********
originalCons : TATTGATAATACAA--TTCA-AAT---TTATGATTTTTAACAA-CTGA-ATTGGGGTG-AATGC----------AAACT-GGG---------TAGAA-CAGCCGGAATGTTGTT---TACCGCGGT--TTCTTTTTATAGCTTT--CG------AGTGAAGAATATAGTGCTGGATTTTTATATTA-CAGAAAAG-AAAA--ATGTTTTACCTTT---TGTCA-C-TTCGAAA-----TTTA-TTCTA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--NGCATAAT--A-GNTT-T-TTCA---CA--AA--TTCA-AAGAAA---TGTATA--GTTGC--AG--------TGA----------CG--TAATA-CGTCA-NT-GTAG---A---TTGTA--GTGACGCAGT--GATT--CGG-TCGTT---GAGCG-------CCAT-ATTGAATGNTA---ATGTC-GAA-AGCA--------CGACACTTCGTG-------TCACT-T--GAAG-T-----TAA-----AG--GTGT---AATTGTTG-AACGTTTG--ACCCAGT-GAAGAGA-ACAG-AT--GAT--GGATTA--ATTC--TTT---GA--GAATAGA---AGA-C-AC-TA-TTTGTT-GA--CGAGGTTTTCAA-GGCTAAG-----TGAG-CG-CCAGGAACGGG-TGACGAGCAAGGTGACAAGG-GANCTA-----------------GGGC---AT------A-GG-AAT-----G-GC----------GA-GCGGCATGGACGG-TTGTTGGGGTAA-GTTAAAGAATTTGAGAAGAATATTTGCTTTTAGAT--CTGTANTGTTGTCATATTTACT----TNGGTTATT-ATGTGATTTT--AG---T-TN--TTTT--TTTCTTCAAGAATTTNGAAAA-GGGCATTG-TGTAACGTGAAGGGTCA-TTAGT-TTG-TAT--G--TTTGTA--A----AATG-CAGCAAA--CATTGGCTCTTT-ATGCTT----TT-TAC-A--CATA-TGCCGCTA--TC--AG-C-AT-CTCAATTTTA-GTTTTTAAA----TT--ATA--TACGTATA-TC-T-ACCCTGAAATA------TATCC--TT-AAT-CCCCAC----AT-----TATGATTT-CC-------TTC-----CCTGTGAAA-AATAA-TACCAC-----AAAAGT--TTCTTGCGCCA-TTTNAATCTGGTGATGCGGTTCTCGTCTGTG--TTATTGGATA-------TTTAATAC-GAAAAGCTTTTCTAT-ATATTCATTACATGTTATTAAGGAAAATACATAGCATATGTAAATATT
finalCons : TATTGATAATACAA--TTCA-AAT---TTATGATTTTTAACAA-CTGA-ATTGGGGTG-AATGC----------AAACT-GGG---------TAGAA-CAGCCGGAATGTTGTT---TACCGCGGT--TTCTTTTTATAGCTTT--CG------AGTGAAGAATATAGTGCTGGATTTTTATATTA-CAGAAAAG-AAAA--ATGTTTTACCTTT---TGTCA-C-TTCGAAA-----TTTA-TTCTA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--NGCATAAT--A-GNTT-T-TTCA---CA--AA--TTCA-AAGAAA---TGTATA--GTTGC--AG--------TGA----------CG--TAATA-CGTCA-NT-GTAG---A---TTGTA--GTGACGCAGT--GATT--CGG-TCGTT---GAGCG-------CCAT-ATTGAATGNTA---ATGTC-GAA-AGCA--------CGACACTTCGTG-------TCACT-T--GAAG-T-----TAAAGTGTAATGTG--------------AACGTTTG--ACCCAGT-GAAGAGA-ACAG-AT--GAT--GGATTA--ATTC--TTT---GA--GAATAGA---AGA-C-ACTAT--TTGTT-GA--CGAGGTTTTCAA-GGCTAAG-----TGAG-CG-CCAGGAACGGG-TGACGAGCAAGGTGACAAGG-GANCTA-----------------GGGCATAGGAATGGC---------------------------GA-GCGGCATGGACGG-TTGTTGGGGTAA-GTTAAAGAATTTGAGAAGAATATTTGCTTTTAGAT--CTGTANTGTTGTCATATTTACT----TNGGTTATT-ATGTGATTTT--AGTTN------TTTT--TTTCTTCAAGAATTTNGAAAA-GGGCATTG-TGTAACGTGAAGGGTCA-TTAGT-TTG-TAT--G--TTTGTA--A----AATG-CAGCAAA--CATTGGCTCTTT-ATGCTT----TT-TAC-A--CATA-TGCCGCTA--TC--AG-C-AT-CTCAATTTTA-GTTTTTAAA----TT--ATA--TACGTATA-TC-T-ACCCTGAAATA------TATCC--TT-AAT-CCCCAC----AT-----TATGATTT-CC-------TTC-----CCTGTGAAA-AAATACCAAAAGTN-----------TTCTTGCGCCA-TTTNAATCTGGTGATGCGGTTCTCGTCTGTG--TTATTGGATA-------TTTAATAC-GAAAAGCTTTTCTAT-ATATTCATTACATGTTATTAAGGAAAATACATAGCATATGTAAATATT
Alignments
lowQualScore : 11 111 11 2222222222 222222222 111 111111 111 11111 111 111 111 11 22222222 2222222222 1111111 111 2222222222 2222 1 22222222 2222222 33333333333333 8888888888888888888888 111 111 11111 111111 1 88888888888888888 33333333333333333333333333333333333333 1 11 1111 222222222 11 1111111 1111 11111111 111111 1111 11111 1111111 11111 11111 5555555555555555555555555 11 22222222 11
lowQualScore : 0 11 6 111 11 6 6 6 9999999999 6 666666666 6 111 2 99 99 999999 6 6 99 5 888 6 6 66666 6 111 6 5 5 5 5 0 77 888 0 99999999999 111 99 99 6 111 99 55 44444444 9999999999 99 6 9999 6666666 99 6 99 99 6 111 2222222222 6 1 4444 0 6 44444444 1111111 99999999999999 6 5555555555555555555555 99 1 6 1 6 5 77 77 77 000 77 77 1 000 888 88888 22222 4 0 3 0 5 8 444444 5 1 22 6 5 6 1 22222222222222222 88888888888888888888888888888888888888 6 8 0 3 11 1 1 4444 1 6 99 666666666 99 1 11 8 1 6 5 5 77 77 4444444 5 66 5 0000 5 5 77 5 2 77 77 5 5 5 5 4 22222222 88888 5 888 5 666666 77 5 66 7777 44444 5 8888888 44444 66666 99 8888888888888888888888888 6 6 1 00 99 3 22222222 22 3 6 0 0 5
lowQualScore : . .. . ... .. . . . .......... . ......... . ... . .. .. ...... . . .. . ... . . ..... . ... . . . . . . .. ... . ........... ... .. .. . ... .. .. ........ .......... .. . .... ....... .. . .. .. . ... .......... . . .... . . ........ ....... .............. . ...................... .. . . . . . .. .. .. ... .. .. . ... ... ..... ..... . . . . . . ...... . . .. . . . . ................. ...................................... . . . . .. . . .... . . .. ......... .. . .. . . . . . .. .. ....... . .. . .... . . .. . . .. .. . . . . . ........ ..... . ... . ...... .. . .. .... ..... . ....... ..... ..... .. ......................... . . . .. .. . ........ .. . . . . .
lowQualScore : 8 00 7 777 00 7 7 7 2222222222 7 777777777 7 777 2 22 22 222222 7 7 22 7 333 7 7 77777 7 777 7 7 7 7 7 1 99 999 7 55555555555 777 22 22 7 777 22 88 22222222 2222222222 22 7 7777 8888888 22 7 22 22 7 777 0000000000 7 0 5555 0 7 22222222 7777777 22222222222222 7 2222222222222222222222 22 0 7 0 7 7 99 99 99 000 99 99 7 000 666 77777 33333 3 7 6 7 7 9 444444 7 4 00 7 2 7 0 55555555555555555 00000000000000000000000000000000000000 7 0 0 2 00 0 4 2222 0 7 22 777777777 22 0 22 0 0 7 7 7 99 99 8888888 0 99 0 6666 0 0 99 7 7 99 99 7 7 7 7 9 33333333 00000 7 333 4 444444 99 7 44 9999 33333 7 6666666 33333 77777 22 5555555555555555555555555 7 7 0 33 22 2 55555555 66 2 7 8 8 0
consensus : TATTGATAATACAA--TTCA-AAT---TTATGATTTTTAACAA-CTGA-ATTGGGGTG-AATGC----------AAACT-GGG---------TAGAA-CAGCCGGAATGTTGTT---TACCGCGGT--TTCTTTTTATAGCTTT--CG------AGTGAAGAATATAGTGCTGGATTTTTATATTA-CAGAAAAG-AAAA--ATGTTTTACCTTT---TGTCA-C-TTCGAAA-----TTTA-TTCTA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--NGCATAAT--A-GNTT-T-TTCA---CA--AA--TTCA-AAGAAA---TGTATA--GTTGC--AG--------TGA----------CG--TAATA-CGTCAN-T-GTAG---A---TTGTAGT--GACGCAGT--GATT--CGG-TCGTT---GAGCGC-------CATA-TTGAATGNTA---ATGTC-GAA-AGCA--------CGACACTTCGTGT-------CACT--------------TGAAG-TTAAA-GT---GTAA----TG--TG-AACGTTTG--ACCCAGT-GAAGAGA-ACAG-AT--GATGG--ATTA--ATTC---TTTGA--GAA--TAGA---AGA-C-AC-TA-TTTGTT-GA--CGAGGTTTTCAA-GGCTAAG-----TGAG-CG-CCAGGAACGGGT-GACGAGCAAGGTGACAAGG-GANCTA-----------------GGGC---AT------A-GG-AAT-----G-GC----------GA-GCGGCATGGACGG-TTGTTGGGGTAA-GTTAAAGAATTTGAGAAGAATATTTGCTTTTAGAT--CTGTANTGTTGTCATATTTACT----TNGGTTATT-ATGTGATTTT--AG---T-T--NTTTT--TTTCTTCAAGAATTTNGAAAA-GGGCATTG-TGTAACGTGAAGGGTCA-TTAGT-TTG-TAT--G--TTTGTA--A----AATG-CAGCAAA--CATTGGCTCTTT-ATGCTT----TT-TAC-A--CATA-TGCCGCTA--TC--AG-C-AT-CTCAATTTTA-GTTTTTAAA----TT--ATA--TACGTATA-TC-T-ACCCTGAAATA------TATCC--TT-AAT-CCCCAC----AT-----TATGATTT-CC-------TTC-----CCTGTG-----AAAA--AA---T-----A-C--CA-AAA-GT-NTTC-TTGCGCCA-TTTNAATCTGGTGATGCGGTTCTCGTCTGTG--TTATTGGATA-------TTTAATAC-GAAAAGCTTTTCTAT-ATATTCATTACATGTTATTAAGGAAAATACATAGCATATGTAAATATT
Reference ( family-8223 ) : TATTGATAATACAA--TTCA-AAT---TTATGATTTTTAACAA-CTGA-ATTGGGGTG-AATGC----------AAACT-GGG---------TAGAA-CAGCCGGAATGTTGTT---TACCGCGGT--TTCTTTTTATAGCTTT--CG------AGTGAAGAATATAGTGCTGGATTTTTATATTA-CAGAAAAG-AAAA--ATGTTTTACCTTT---TGTCA-C-TTCGAAA-----TTTA-TTCTA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--NGCATAAT--A-GNTT-T-TTCA---CA--AA--TTCA-AAGAAA---TGTATA--GTTGC--AG--------TGA----------CG--TAATA-CGTCAN-T-GTAG---A---TTGTAGT--GACGCAGT--GATT--CGG-TCGTT---GAGCGC-------CATA-TTGAATGNTA---ATGTC-GAA-AGCA--------CGACACTTCGTGT-------CACT--------------TGAAG-TTAAA-GT---GTAA----TG--TG-AACGTTTG--ACCCAGT-GAAGAGA-ACAG-AT--GATGG--ATTA--ATTC---TTTGA--GAA--TAGA---AGA-C-AC-TA-TTTGTT-GA--CGAGGTTTTCAA-GGCTAAG-----TGAG-CG-CCAGGAACGGGT-GACGAGCAAGGTGACAAGG-GANCTA-----------------GGGC---AT------A-GG-AAT-----G-GC----------GA-GCGGCATGGACGG-TTGTTGGGGTAA-GTTAAAGAATTTGAGAAGAATATTTGCTTTTAGAT--CTGTANTGTTGTCATATTTACT----TNGGTTATT-ATGTGATTTT--AG---T-T--NTTTT--TTTCTTCAAGAATTTNGAAAA-GGGCATTG-TGTAACGTGAAGGGTCA-TTAGT-TTG-TAT--G--TTTGTA--A----AATG-CAGCAAA--CATTGGCTCTTT-ATGCTT----TT-TAC-A--CATA-TGCCGCTA--TC--AG-C-AT-CTCAATTTTA-GTTTTTAAA----TT--ATA--TACGTATA-TC-T-ACCCTGAAATA------TATCC--TT-AAT-CCCCAC----AT-----TATGATTT-CC-------TTC-----CCTGTG-----AAAA--AA---T-----A-C--CA-AAA-GT-NTTC-TTGCGCCA-TTTNAATCTGGTGATGCGGTTCTCGTCTGTG--TTATTGGATA-------TTTAATAC-GAAAAGCTTTTCTAT-ATATTCATTACATGTTATTAAGGAAAATACATAGCATATGTAAATATT
gi|1 : TATTGATAATACAA--TTCA-AAT---TTATAATTTTTAACAA--TGACATTGGGGTG-AATAC----------AAACT-GGG---------TAGAA-CAGCCGGTATGTTGTT---TAACGCGGT--TTCCTTTTATAGCTAT--CG------AGTGAAGAATATAGTGCTGGATTTTTATGTTA-CAGAAAAG-AAAA--CTGTTTTACCTCT---TGTCA-C-TTCGAAA-----TTTA-TTCTA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GTAA--AGCATAAT--A-GCTT-TGTTCA---CA--AA--TTCA-AAGAAA---TGTATA--GTTGC--AG--------TGA----------CG--TAATA-CGTCAG-T-GTAG---A---TTGTAGT--GACGCAGT--GATT--CGG-TCGTT---TAGCGC-------CATA-TTGAATGCT----ATGTC-AAA-AGAA--------CGACACTTCGTGT-------CACC--------------TGAAG-TTAAAGGT---ATAAT---TGT-TG-AATGTTT---ACCCAGT-GAAGAGA-ACAG-AT--GATGG--ATTA--ATTC---TTTGA--GAA--TAGA---AGA-C-AC-TA-TTTGTT-CA--CGAGGTTTTCAA-GGCTAAG-----TGAG-CG-CCAGGAACAGGT-GACGAGCAAAGTGACAAGG-GATCTA-----------------GGGC---A-------A-GG-AAT-----G-TC----------GA-GCGGCATGGACGG-TTGTTGGGGTAA-TTTAAAGATTTTGAGAAGATTATTTGCTTTTAGAT--CTGGAATGTTCTCATATTGATT----TATGTTATT-ATGTGATTTT--AG---T-T--TTTTT--CTTCTTCAAGAATTTAGAAAG-GGGCATTG-TGTAACGTGAAGGGTCA-TTAAT-TTG-TAT--G--TTTGTA--A----AATG-CAGCAAA--CATTGGCTCTTT-ATGCTT----TT-TAC-A--CATA-TGCCACGA--TC--AG-C-AT-CTTAATTTTA-GTTTTTAAA----TT--ATA--TATGTATA-TC-T-ACCCTGAAATG------TATCC--TT-AAT-CCACAC----AT-----TCTGATTT-CC-------TTC-----CCTGAG-----AAAAATAA---T-----AGCA-CA-AAA-GT-GTCC-TTGCGCCA-TTTGAATCTGGTGATGCGGTTCTCGTCTGCG--TTATTGGATA-------TTTAATAC-AAAACACTTTTCTAT-ATATGCATTGAATGTTATTAAGAAAAATACATAGCATATGTAAATATT
gi|10 : TTG-TGTAACGTGAAGGGTCA-TTAGT-TTG-TAT--G--TTTGTATAA----AATG-CAGCAAA--CATTGGCTTTTT-ATGCTT----TT-TAC-A--CATA-TGCCGCTA--TC--AG-C-AC-CTCAATTTTA-GTTTTTAAA----TTAAATA--TATGTATA-TC-C-ACCCTGAATTA------TATCC--TT-AAT-ACCCACATATAT-----TATGATTT-CC-------TTCTAATTCCTGTG-----AAAA--A-----------------------T-ATTC-TTGCGCCA-TTTCAATCTGGTGATGCGGTTCTCATCTGTG--TTAGTGGATA-------TCTAATACAAAAAAGCTTTTCTAT-ATATTCATTACATTTTATCAAGGAAAATACATAGCATATGTA
gi|11 : TAGT-TTG-TATCTG--TTTGTA--A----AATG-CAGCAAA--CATTGGCTTTTT-ATGTTTATGTTT-TAC-A--CATA-TGTCACTA--TC--AG-C-AC-CTCAATTTTA-GTT----------------------GTATA-TC-A-ACCCTGAAATAGGCCCATATCC--TT-AAT-CCCCAC----AT-----TATGATTT-TC-------TTC-----CTCGTG-----AAAA--AA---T-----A-C--CACAAACGT-ATTC-TTGCGCCA-TTTAAATCTGGTGATGTGGTTCTC---CGTG--TTATTGAATA-------TTTAATAC-AAAAAGATTTTCTATGAT-TTCATTACATGTTATTAAGGAAAATATCTAGCATAT
gi|12 : cTATTGATAATACAA--TTCA-AAT---TTATGATTTTTAAGAA-CTGA-ATTGGGGTG-AATGC----------AAACT-GGG---------TAGAA-CAGCCGGAATGCTGTT---TACCGCAGT--TTCTTTTTATAGCTTT--CG------AGTGAAGAATATAATGCTGGATTTTTATATTA-CAGAAAAG-AAAA--ATGTTTTACCTTT---TGTCA-C-TTCGAAA-----TTTA-CTCTT---ATAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--AGCATAt
gi|13 : catatatttacattttcagagagtacaatttTA--T----AACG-TAGCAAA--CATTGGCTC-----TG-TT----TT-TAC-ATTC-TA-TGCCCCCACTTT--AG-C-AT-CTCAGTTT
gi|14 : tttatttattttgtgattactttttatttgtatttaagaactttagaaagcgacatgttataccacacgaaaaaacaaccctttgcgtaacagctgtgaagtataagattgcattttattcgttgtcttagtcatgagataaaaacaCAC-AT--GATGG--ATTA--ATTC---TTTAA--GAG--T--------------------TGTT-GA--CGAGATTTTGAA-GGCTTGG-----TGAG-CA-CCGGGAACGGGT-GGCAAGCAAGGTGACAAGG-GAACTAGTGACACATC-------GGGCGTGAT------A-GG-GGTGGCAAG-GC----------GA-GCGGCATGGACAT-TTGT
gi|15 : AAAAGCGTTTCTAT-ATATTCGTTACATGCTATTAAGGAAAATACATGGCATATGTAAATATT
gi|16 : ctgcctaatggtagacaaccgacataGTTTTTAGAT--CTGTAGTATTATCATATTCACT----TTGACTATT-ATGTAATTTT--AG--------GGTGT--TTTAATCAAGAATTagt
gi|17 : ATTTTA-GTTTTTAAG----GT--ATA--TA-------TC-T-ACCCTGAA--A------TATCT--TT-AAT-CCCCCC----AT-----TGTG--TT-TC-------TTC-----
gi|18 : GGGCAA-TTAGT-TTG-TTA--G--TTTGTA--A----AATG-CATCAAA--CATTGGTTCTTT-ATGCTT----TT-TAC-ttgt
gi|2 : -AAT---TTATCATTTTTAACAA-CTGA-ATTAGGGTG-AATGC----------AAACT-GGG---------TAGAA-CAGCCAGAATGGTGTT---TACCGTAGT--TTCTTTTTATAGCTCT--CG------GGTGAAGAATATAGTGCTGGATTTTTAAGTTA-CAGAAAAG--AAA--ATAGTTTACCTTT---TGTAA-C-TTCGAAA-----TTCA-TTTTA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--AGCATAATAAA-ACAC-G-TTCA---CA--AA--TTCA-AAGAAA---TGCATA--GATGC--GG--------TGA----------CG--TATTA-TGTCAT-TGGTAG---A---TTGTAAT--GACGCAGT--GATC--CGG-TCGTT---GAGTGC-------CATA-TTGAATGCTATACATATA-GAT-AGCA--------CGACACTTCGTGT-------CACT--------------TCAAG-TTAAAGGT---GTAAT---TGT-TG-AACG-TTG--ACCCAAT-GAATAGA-CCAG-AT--GATGG--ATTA--ATTC---TTTGA--GAA--TTGA---AGA-C-AC-TA----GTT-G---C------------------------TGAG-CG-CCAGGAACCGGT-GACGAGCAAGGTGACAAGG-GAACTAGACCCTAGTGACAAATCGGGC---GTGCAATCA-GGTGAT-----G-GCAAGGAATGATGA-ACGGCATGGACGG-TCGTCGGGGTAA-GTAAAAGAATTTGAGAAGAATATTTGCTTTTAGAT--CTGTAGTGTTATCGTATTTACTTTAATAGGCTATT-ATGTAATTTT--AG---TGG--GTTTT--TTTCATCAAGAATTTAGAAA
gi|3 : ATTTAAAATACAAGATTCATAATACTCTATA--TTCTATCAA-CAAA-ACTGGAGAG-ATTGTTGGTAGCATAAAGCT-GAGAGTTCATAATAGAAACAGCCGAAATGTTGTTTGCTACCGCTGCTATTCTTTTTATAGCTTCAACGGTATAAAGTAAGTAGTTTAGTGTCTCATTATCACCTT----TAAAGG-AAAAATATGTTTAACCTTTATCTGTCACC-TTCGAAAGAGCCTGCA-GTCTATATGTAATTATTGTTAG-GT-TGTAAAAGA--GCAATTTGAATAAT--A-GATTAT-TTCAGTGCA--GAATTTCAGAAGAAA---TGTATA---CTGC--AGGAGCGTATTAA----------CGTCTAACA-AGTTAG-A-ATAGATAA---TTGTCG------GCA-T--GATTTACGGTTCGTGCCAGAGCTC-------GA-A-ATAAAAGAGA---AAGTC-GAAGAGCG--------AGACACTT-ATAT-------CACTGTTAGAAGTAATTCTGACA-TTTAG-GT---GTAGAAATTA--TT-CAAGTTTG--ATCCA-T-GAAAAGA-AGAGTATCAGATAG--ATTACGATTA---CTTGA---AA--TAGAGACAGATC-AC--A-TTTGTT--ATTCGA-GTTCTCGACAGC-AAG------GAG-CGACCAGGAg
gi|4 : agatataaattcaaatgctcaattacgttattaacatcatccgaaagagtaaaaatactgtcatta-AGCA--------CGGCTCTTCGTGT-------CACT--------------TGAAG-TTAAA-G--------------------ACGTT-G--AACCAGT-GAAGAGA-ACAG-AT--GATGG--ATTT--ATTC---TTTGA--GAA--TAGA---AAA-C-AC-TA-TTTGCT-GA--CGAGGTTTTCAA-GGCAAAG-----TGAG-CG-CCAGGAACGGGT-GAC------------AAGG-GATCTA-----------------GGGC---A-------A-GG-AAT-----G-AC----------AA-GCGGCATGGGCGG-TTGTTGGGGTAA-GTTAAAGAATTTGAGAAGAATATTTGCTTTTATAT--CTGTACTGTTGTCATATTTACT----TTGGTTGTT-ATGTGATTTT--AG---T-T--TTTTTTTTTTCTTCAAGAATTTCGAAAT-GGGCATTG-TGTAACGTGAAGGGTTA-TTAGT-TTG-TAT--G--TTTGTA--A----AATG-CAGCAAA--CATTGGCTCTTT-ATGCTT----TT-TAC-A--CATA-TGTCACTA--TC--AG-C-AT-CTCAATTTTA-GTTGTTAAA----TT--ATA--TACGTATA-TC-T-AACCTGAAATA------TATCC--TT-AAT-CCCCAC----AT-----TATGATTT-CC-------TTC-----CCTGTG-----AAAA--AAAATT-----A-CCACA-AAA-GT-CTTC-TTGCGCCA-TTTTAATCTGGTGATGCGGTCCTCGTCTGTG--TTATTGGATAACCAGGTTTTGATAT-TAA---CTTTT-TAT-
gi|5 : A-AGCA--------CGGCG-TTCGTGG-------TA-T--------------TGAAGGTTAAA-A-------------------GACGTTTGGAACCCAGTTGAAGAGA-ACAG-AT--GATG---ATTT--ATTC---TTTGATGAAA--TAGA---AAA-CCAC-TAATTTGCTCGA--C-AGGTTTTCAA-GGCAAAG-----TGAG-CGGCCAGGAA---------------GGTGACAAGG-GATCTA-----------------GGGC---AA------G-GG-AAT-----G-AC----------AA-GCGGCATGGGCGGGTTGGTTGGGTAAAGTTAA-GAATTTGAGAAGAATATTTGCTTTTATATATCTGTACTGTTGTCATATTTACT----TTGGTTGTTTATGTGACTTTTAAGCTTT-T--TTTTT--TTTCTTCAAGAAATTCGAAAATGGGCATTG-TGTAACGTGAAGGATAT-TTAGT-TTG-TAT--G--TTTGTA--C----AATG-CAGCAAA--CATTGGCTCTTTAATGCTT----TT-ACC-A--CATA-T-TCACTA--TC--AGCC-ATACTC-ATTTTA-GTTGTTAAA----TT--ATA--TACGTATA-TCTT-AACCTGAATGA------TATCC--TT-AAT--CCCACA---AT-----TATGATTTCCC-------TTC-----CCTGTGAAACAAAAA--AA---TTACAAA-C--AA-AAA-GTCCTTC-TTGCGCCA-TTTTTATCTGGTGATGCGGTCCT--TCTGTGGCTTATTGGATA-------ttctgc
gi|6 : T-CTAA-GTAT-TGAAA----GCAA--TG-ATAAT--G-ATGT-T-TTCA---CA--AA--T-CA-AAGAAAATTTGTATAATGTTGCTTAG--------TGAGACTAGGTATTA--TAAGA-TGTCAGCT-GTAG---GATTTTGTAATATGAATCTGTTGGGGT--CGG-TGGGT---GAGCGGGGGTGAATATAATTGAATTATG---ATGTCTGAA-ATCAGCTCAAGTTGACACTTCGTGTTGTCACTCACT--------------TGAAG-ATAAC-GTTTTGTAA----TGGATGTAACGTTTG--ATC-AGT-GAGTCAATACAG-AT--GATGAGAATTA--ATTTCATTTCTA--GAACATAGT---AGA-G-ACATA-TTTTTT-GA--CGAGGTT---AA-GGCTAAGAATGACGAGTCG-TCCGAAGTGGGTTGACGAGCAAGGTGACAAGGCGGACTAT----------------GGGC---AT------ACGG-AAT-----ACGC----------GATGCGGCATGGACG
gi|7 : ATTTACT----TAGGTTATT-ATGTGATTTT--AG---T-TGGGTTTT--TTTCTTCAAGAATTTTAAAAA-GGGCATTGTTGTAACGTGAAGGGTCAGTTAGTCTTGATAT--GTTTTTGTA--AATAGAATGCCAGCAAATGCATTGGCTTTTT-ATGCTT----TTGTACGA--CATATTGCCGCTA--TCAGAG-CAAT-CTCAATTTGATGTTTTTAAATTTTTT--ATAAGTTTGTATACTC-TCACCCTG-AATA------T-TCCAGTTAAATGCCCCAC----ATGTGTATATGATGT-CCTATCTAATTC-----CGTGT------AAAA--AA---T-----A---------------TTCTTTGCGCCATTTTCAGTCT-GTGATGC-GTTCCAATCGGTT--TTA-TGGATA--------TTAATAC-GAAAAGC-TTTCTAT-AGATTCA-TACAT-TTATCAAGGAAAATACATAGCATATGTAAA
gi|8 : TATTGATAATACAC--TTCA-------TTAT---TTTCAACAA-CTGA-ATTGGGGTG-AATGC----------AAAAT-GGG---------TAGAA-CAGCCCGAATGTTGTT---TACCGCGGT--TTCTTTTTATGACTTT--CA------GGTGAGGAATACAGTGCTGGATGTTTATATTA-CAGAAAAGAAAAA--ATGCTTTACCTTT---TGTCA-C-TTCGAAA-----TTTA-TTTAA---GTAA-CATT-TTAA-GT-T-TGAAAAA--GCAA--TGCATACT--ACAATT-T-TTCA---CA--AA--TTCA-AAGAAA---TGTATA--GTTGC--AG--------TGA----------CG--TATTA-CGTCAC-T-GCAG---A---TAATAGT--GACGCAGT--GATT--CGG-TCGTT---GAGCGC-------CATA-TTGAg
gi|9 : aatattaattcaatgcttatatttatatttccggagagtaaactttATTGATAA-ACAA--TTCA-AAT---TTATGATTTTTAAGAAACTGA-ATTGGGGTGAAATGC----------AAACTGGGG---------TA-AA-CAGCCGGAATGCTG-T---TACCGCAGT--TTCTTTTTATAGCTTT--CG------AGTGAAGAATATAATGCTGGA-TTTTATATTATCAGAAAAG-AAAA--ATG-TTTACCTTTG--TGTCA-CTTTCGAAA-----TTTAGCTCTT---ATAA-AATT-TTAAGGT-T-TGAAAAAAGACAA--AGCAT-AT--A-GATT-T-TTCA---CAACAA--TTC--AAGAAA---TGTATA--GTTGTG-AG--------TGA----------CG--TTATAGCGTCAT-T-GTAG---A---TTGTAGT--GACGCA-T--GATT--GCG-TCGTT---GAGCGC-------T-CA-TTGA