lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1111111111111111111 1111111111111 11111111111111111111111111111111
lowQualScore : 1111111111 1111111111 666666666666666666666666666666666666666666666666666666666666666666666666666666 1111 2222222222222 111 1111 6666666666666666666666 11 1 33 00000000 333333333 222 11 11 44444444 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3333333 1 33 11 1111 6666666666666666666 1 1 1 11 66666666666666666 11 2 11 0000000000000 1111 111 1 111 111111 1 111 222222222222 11 33333333333333333333333333333333
lowQualScore : 2 666666 2 333 555 2 22 2 2 99999999999 555555 2 2 2 1111111111 2 3333333333 2 0 333 77777 7777 444 5 99999 111111111111111111111111111111111111111111111111111111111111111111111111111111 5 1 8 8 7777 8 1 7777777777777 999 4 11 999 1111 3 8 2 2222222222222222222222 0 33 2 2 0 66 3 33333333 333333333 222 33 33 3 2 7 22222222 3 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1111111 0 2 66 00 0 3 8 11 7777 3333333333333333333 8 6 0 0 55 5 11 22222222222222222 33 0 3 99 6 6666666666666 3 4444 555 0 6 88 8 444 6 999999 6 6 1 5 5 000 5 5 777777777777 4 55 00 4 3 3 66 3 33 3 3 3 3 0 2 2 7 77 55555 22 4444 333 2 8 4 2 22 22 22 4 2 8 2 55555 11111111111111111111111111111111 2 33 2 666 444 2 2
lowQualScore : . ...... . ... ... . .. . . ........... ...... . . . .......... . .......... . . ... ..... .... ... . ..... .............................................................................. . . . . .... . . ............. ... . .. ... .... . . . ...................... . .. . . . .. . ........ ......... ... .. .. . . . ........ . ..................................................................................................................................................... ....... . . .. .. . . . .. .... ................... . . . . .. . .. ................. .. . . .. . ............. . .... ... . . .. . ... . ...... . . . . . ... . . ............ . .. .. . . . .. . .. . . . . . . . . .. ..... .. .... ... . . . . .. .. .. . . . . ..... ................................ . .. . ... ... . .
lowQualScore : 1 111111 1 777 888 1 99 1 1 55555555555 888888 0 0 0 3333333333 1 4444444444 1 2 999 88888 6666 111 7 44444 222222222222222222222222222222222222222222222222222222222222222222222222222222 7 5 0 0 0000 0 0 0000000000000 444 6 88 333 5555 2 8 5 5555555555555555555555 2 88 5 5 0 22 2 00000000 555555555 000 88 88 2 5 3 00000000 0 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0000000 0 5 88 88 8 2 0 00 0000 0000000000000000000 8 0 0 0 55 0 00 77777777777777777 22 0 2 00 0 4444444444444 2 8888 666 8 0 88 0 000 7 222222 7 7 4 7 7 000 0 0 222222222222 4 44 99 0 6 5 55 6 77 3 3 3 3 8 9 9 7 99 66666 99 5555 777 2 9 2 1 99 99 88 2 1 4 1 33333 99999999999999999999999999999999 5 44 5 999 444 5 5
consensus : GGGGTC-CT------A-C---T---AAA-C--A-GAGTAC-T-----------T------T-AG-AG-TACG---------TTA-GAG----------TA-CGC---TGG-----AA---TAA---TAAC----CATA---A---------AT-----------T----T-TCTA-A-GTA-ATGC-----AA---C--TGA-------T--AA--AATA-ATTTTGC-AATAG-TTG----TC-TCAATT----A-TT---TGTTTTTA-GCGATGTTCTATAACCATAAAACGGCATTCT-----------AT---T----AAAGGTTTTTG--CCATCCCG-ATCCCGATTATTATTATT-----ATTTGGTGAGAATTTAGCA----T----ACTAC-ACCA--GTG--ATCATTTNATCATTC-GGGTTAGTCGGAAAANCTATCAAGTTCTATCATAGAGAGAGANATCGCGGTTAA-TAACGAGNNNAGAATAGCTCCCGCGCAATAGCGTAAAATTGC-GTG-----AAAAC-------GAC-------ATTG--ACNATT--A---TAA-----ATG-A--C-----GTTTC------C-AGCTTGTTCACGCTTTGACGAATA-AATGTTCTT-CA--ATAAAGTAAAT----AATATGGNTT------T------TATAAATGCATGTAAATTGG-TTA-GTTTCACACACACNTGTA-ATAC-G-TAT-TAT-TTTTA-TGTTAAAAT--GTAATTGATA-----ATT-TGATCGGGATCA---AGCGGTAAN-CCGTAGC-T-TGA-AGC---AA-TAA------AT-TGAAATA-ATTCCTAAAAT-ACTG-A-AAA---CAAACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGG-TTA-AACTA-CAG-TACGATCA-TT-CATTAA-CA-GCAG-T-TAAATNGC-ATT-----GAAA--T----ATA---A-T-ATT-T-TT--CC--AG-CG-T-A-C-T-----CTAAAGT-----AC-TCTAACGTAC-GTA-CTCT--CTAAAGTACTC-T--G-TTT---A---G-TAG-GAC
Reference ( gi|1 ) : GGGGTC-CT------A-C---T---AAA-C--A-GAGTAC-T-----------T------T-AG-AG-TACG---------TTA-GAG----------TA-CAC---TGG-----AA---TAA---TAAC----CATA---A--------AAT-----------T----T-TCTA-A-GTA-ATGC-----AA---C--TGA-------TA-AA--AATA-ATTTTGC-AATAG-TTG----TC-TCAATC----A-TT---TGTTTTTA-GCGGTGTTCTATAACCATAAAACGGCATTCT-----------AT---T----AAAGGTTTTTG--CCATCCCG-ATCAAGATTATTATTATTTGATAATTTGGTGAGAATTTAGCA----T----ACTAC-ACCA--GTG--ATCATTTCATCATTCTGGGCT-CTCGGAAAAACT-TCAAAATTCACAATCGA---ATGTATTGCAGTTAGTTAACTAGCTTAAAATA-CT-C----------CGT-AAATTGC-AT------AAAAC-------AAC-------ATTG--ACTATT--A---TAA-----A------------GTTTT------C-AGCTTGTTCACGCTTTGACGAATATAATGTTCTT-CA--ATAAAGTAAAT----AATATGGTTTACAATGTACAATGTATAAATGCATGTAAATTAG-TTA-GTTTCACACACACCTGTA-ATAC-GCTAT-TAT-TTTTA-TGTT-AAAT--GTAATTGATACCGGTATT-TGATCGGGATCA---AGCGGTAAA-CCGTAGC-T-TGA-AGC---AA-TAA------AT-TGAAATA-ATTCCTAAAAT-ACTG-A-AAA---CAAACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGG-TTA-AACTA-CAG-TACGATCA-TT-CATTAA-CA-GCAG-T-TAAATGGC-ATT-----GAAA--T----ATA---A-T-ATT-T-TT--CC--AG-CG-T-A-C-T-----CTAAAGT-----AT-TCTAACGTACCGTA-CTCTATTTAAAGTACTC-T--G-TTT---A---G-TAG-GAC
gi|19 : GGGGTCACT------A-C---T---AAAAC--A-GAGTAC-T-----------T------T-AG-AG-TA-------------------------------CAC---TGG-----AAT--TAA---TAAC----TATA---A---------------------------T-TCTT-A-GTA-ATG
gi|2 : GGGTC-CT------A-C---T---AAA-C--A-GAGTAC-T-----------T--------AG-AG-TACG---------CTA-GAG----------TA-CAC---TGG-----AA---TAA---TAAC----CATA---ATTCTAAGTAATGCAACAGATTAT----T-TTTA-T-TTATATGCTC---AA---A--TAAACATTATTATAA--AATA-ATTTTGC-AATAG-ATG----TC-TCAATT----A-TT---TGTTTTTA-GCGATGTTC--TAACCATAAAACGGCATTCTATTACAATGTAAT---T----AAAGGTTTTTG--CCAT-CCG-ATCCCGATTATTATT--------ATTTGGTGAGAATTTAGCATACGT----ACTAC-AACA--ATG--ATCATTTCAgcacagtattattttcatt
gi|3 : acaGGGTC-CT------A-C---T---AAA-C--A-GAGTAC-T-----------T------T-AG-AG-TACT---------TTA-GAG----------TAACAC---TGG-----A----TAA---TAAC----GATG---A---------------------------T-TCTA-A-GT------------------------------------AATA-------C-AACAGATTA----TC-T------------T---TATTTATA-------TACT-TAA---TAAA----CATT-------------AT---T--------GTTTTTGGGCCATCCGG-ATCCCGATTATTATTATTT--------GGTGAGAATTTAGCA----T----ACTAC-A-CA--GTG--ATCATTTCA-CATTC-GGGTTAGTCGGAAAAACT------------------------TATTGCAGTTAA------AACTTAAAATA-CTCC----------CGTAAAATTGCTGTG-----AAAAC-------AGCACAAACAATTGAAATTAATAAA---TAAATATGA------------GTTTTGTTTTCC-AGCTTGTTCA-GGTTTGGC-AATA-ATTATTCTT-CA--AATAAGTAAAT----AATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgacagttatagataaatacagtttgtttccagcttgttcacgctttgacaaataatgttcttcaataaaataaataatatgggttataattaaatgcatgtaaattggttagtttcacac
gi|8 : GGGTC-CT------A-C---T---AAA-C--A-GAGTAC-T-----------T------T-AG-AG------------------AAG-------------CAC---TGG-----AAAAATAACCATAAT----TCTA---AGCT-----AATACAACAGATTAT----T-TTTA-T-TCATATGCTTAAAAA---CATTAT-------TATAA--AATA-ATTTTGC-AATAG-TTT----TC-TCAATT----AATT---TGTTTTTA-GTGATGTTCTA-AAC-ATAAAACG-CATTCT-----------AT---TTAATAAAGGTTTTTG--CCATCCGA-ATCCCGATTATTATT--------ATTTGGTGAGAATTTAGCA----T----ACTACAACCA--GTGATATC-TTTAATCATTCatcggatcaagcggtaaaatcgtagctgaagcaataaattgaaataattcctatatactgaaaacaaacaaaatatatttctaatatatatttaataggttaaactacattacgatcatttcattaaagcgttaaaggcattaaaatatacaacctattc
gi|20 : tGGGTC-CT------A-C---TGCAAAA-C--ATGAGTAC-T-----------T------T-AG-AG-TACG---------TTA-GAGTATTTAGAGTTA-CAC---TAG-----GA---TAA---TAAC----AATA---
gi|18 : cGGGTC-CTGCGTATA-C---T---AAA-C--A-GAATAC----------------------AG-AG-TACT---------TTA-GAG----------TG-CGC---TAA-----AA---AAA---T--T----CATA--------------------------T----G-TCAA-A-GTA-ATCC-----AA---C--TGA-------Ttttataa
gi|7 : accGGTC-CT------A-C---T---AAA-C--A-GAGTAC-T-----------T------T-AG-AG-TACG---------TTA-GAG----------TA-CTT---TAG-----AG---TA-----CAC----TGAA---A--------AATA----------TTATAT-TTTA-AGGCA-ATTT-----AACGGC--TGA-------TT-AATGAATG-ATTtatttatattattt
gi|13 : aaatatgttttttcaataaagtaaataatatggttataaatgcatgtaaattggttagtttcacacacttgtaatttatgttaaaatgtaattgatatttgaatcgggatcgggatcaagccgtattccgtagcttgaagcaatacattgtaatgattcctaaaataactgaaaacaacaaaatatatttctaatatatatttaataggtttaaattacagttacGGTC-CT------A-C---T---AAA-C--A-GAGTAC-T-----------T------T-AG-AG-TACG---------TTA-TAA----------TA-C
gi|14 : tatatttctgatatatatttaataggttaaaatacagtacaatcattcattaacagcagttaaatggcattgaaatataatattttccagcattctctaaaGGTC-CT------A-C---T---AAA-C--A-GAGTAC-T-----------T------T-AG-AG-TACG---------TTA-GAG----------TA-CGC---TGG-----AA---
gi|10 : agatatatttaataggctaaactacagtatgatcattcattaacagcagttaaatagcattaagatataatattctGGTC-TT------A-C---T---AAA-C--A-AAGTAC-T-----------TGTACATT-AG-AG-TACT---------TTA-GAG----------TA-CGT---TGGGGGAAAA---TGA---TAA
gi|17 : gataaactgaaataattccttaaatgatgaaaacaaacaaattacatttcacaaatatatctgttaggttaagttaagtacgggcattaatgaactgcagttagagtgcaatgaatGGTC-CT------A-C---T---AAA-C--A-GAG-AC-T-----------T------GGAG-AG-TACG---------TTA-GAG----------TA-C-T---TAG-----AG---TAA---
gi|9 : ttattcattaacagcgttaaatggccttaaaacatataatattttttcagggGGTC-CT------A-C---T---AA--C--A-GAGTAC-T-----------T------T-AGAAG-TATG---------TT
gi|12 : gtgaagttgtgattaatatttgatcaggattggtcagcggtttactgaaattgaaactatgaatgtgaaataattctaagatattgataaacaaaaatatatttcacgtatatattttataggttatagctatctatatgacattcatgaataggcattacattgctattagaatttgaaaaaaatttcGGTC-CT------AAC---T---AAA-C--A-GAGTAA-TATTAGAGTTAGT------T-AG-AGGTACT---------TTA-GAGA---------TA-CAC---TGGA----AA---TAA---T-AT----CATATTTA--------TAT-----------T----TAGCTA-A-ATA-
gi|21 : GGTA-CT------A-C---T---AAA-C--A-GA------------------------------G-TACG---------TTA-GCG----------TA-CAC---TGG-----TA---AAA---Tcaatcaatgtattattttatctattttatatatacttaaataacattattgtc
gi|4 : aatttaatagtatttaatagtattcaaaaatatgaaGTC-CT------A-C---TT--AAA-C--A-GAGTACTT-----------T------T-AG-AG-TACA---------TTAGGAG----------TA-CGT---GGG-----AA---TAA---TA
gi|6 : aaaattgctgtgaaataacatgcataaaacgaattgacaattaaaataaatgtagtttcgtttcccagcttgttcacgctttgaagcaaataatattttaaatataaagtaaataatattgctttataatgcaatgtaaattggtttatgtttcacaacacatgtagatactgctatgtatttttattgttaaaatggtaatgttatatttgtcgggatcaagcggtaattcgtagctttgaagcaattaaattgaaatagattcctaaaatactgaaaaataaacaaaatatattttctaagcatatattaataggctaaactacagacgcttcattacagcagttaatggatttaaaattaacGTC-CT------A-CATCT---AAA-C--A-GAGTAC-T-----------T------T-AG-AG-AACT---------TTA-GAG-----------A-AACGAATGG-----AA----AA---AAAT----ATTA---A--------TATA----------T----T-T-------TA-ATG-----------C--T-----------------ATATATCCTACTGATAG-TTGACTACC-TCATTCTACTA-TTCACTCTCTCTA-GTGGTGTTCT
gi|16 : atgttgttccagcttgttcacgctttgatgaataatgcttcaataaagtaaactcaaaatatgggttataaatgaggtaaattggttagtttcctaacaccgttacgatctatgttttatgttaatgtaattgatccggaatcagcggtaaccctaacatatgagagcctaaatgagactctataaataattcctaaaattactgaagagagcaaacacagatatcacaataGTC-CT------T-C---T---GAA-C--A-GAGTAA-G-----------C------T-AC-AG-TACGTTACAGACTTTA-GAG----------TA-CGT---GGG-----TA---AAA---T-AT----CATA---A---------------------------T-TC-A-A-GTA-A
gi|15 : ctaaactaaggacacttacaaacaacggcttaatGTC-CT------A-C-------AAA-CTCA-GAGTAC-T-----------T------T-AG-AG-T-TG----------TA-GAGA---------TA--AC---TGG-----AA---AAA---T-AT----AATA---A---------------------------T-TCAAGA-GTA-ATTT-----AA---C--TAA-------T
gi|11 : TC-CT------A-C---T---AAA-C--A-GAGTAC-T-----------T------T-AG-AG-AACT---------TTA-GAG----------AA-CGA---TGG-----AA---AAA---TAtttttatatggtaacacttaattaaactttgtta
gi|5 : atactgaaaacaaacaaaatatatttctaaaatatatttaataggttaaattacagtacgatcatgcattaacaccagttaaatagcattaaaatataa-----------T------T-AC-AG-TAT----------TTA-GAG----------TA-CAC-----G-----GA---TAT---TAACAGCCCATA---A----------------------T----T-CCTA-A-GTA-ATGC-----AA---C--TG---------------AATA-ATTTT
gi|5 : gagccgA-ATTGTGC-AATAT-TTG----TCCTCAATT----A-TT----GTTTTTAAGCGATG--CTAGAACCA-AAAACGGCATTCT-----------ATAAGT----AAAAAGTTTTG--CCATCCCGCGTCC-GATTATT--TATT-----ATTTGGTGAGAATTTGGCA----TAGCGACCAC--CCAGGGTG--ATCATATATTCATTC-GGGTT-GTCGGAAAACCTATCAAGTTCTATCATAGAGAGAGAGATCACGATTA--TAACGAGGAGAGAATAGCT-CCGCGCAATAGCGT-AAATTCC-ATGGGTAAAAAATACGCATAAAC-------ATTG--ACTAatttatatgcttaaattatatacatgcacataacacaaattgtgcaatatttgtcctcaattattgtttttaagcgatgctagaaccaaaaacggcattctataagtaaaaagttttgccatcccgcgtccgattatttattatttggtgagaatttggcatagcgaccacccagggtgatcatatattcattcgggttgtcggaaaacctatcaagttctatcatagagagagagatcacgattataacgaggagagaatagctccgcgcaatagcgtaaattccatgggtaaaaaatacgcataaacattgacta
gi|4 : gagccgttacagtatttagagtacacggatattaacagcccataattcctaagtaatgcaactgaataattttatttatatgcttaaattatatacatgcacataacacaTGC-AT------AAAAC-------GA--------ATTG--ACAATT--AAAATAA-----ATGTAGTTTC---GTTTC------CCAGCTTGTTCACGCTTTGAAGCAAATAATATT-TT-AAATATAAAGTAAAT----AATATTGCTT------TATAATGCA-------ATGTAAATTGGTTTATGTTTCACA-ACACATGTAGATACTGCTATGTAT-TTTTATTGTTAAAATG-GTAA-TGTTA----TATT-TG-TCGGGATCA---AGCGGTAAT-TCGTAGCTT-TGA-AGC---AATTAA------AT-TGAAATAGATTCCTAAAAT-ACTGAA-AAA---TAAACA-A-AATAT------------ATTTTC-TAAGCATATA-TTAATAGG-CTA-AACTA-CAG--ACG--C--TT-CATT-A-CA-GCAG-T-T-AATGGA-TTT-----AAAA--T-----TA---ACT-ATT-A-TT--CC--CA-CG-T-A-C-T-----C---------------CTAA-----TGTA-CTCTA---AAAGTACTC-T--G-TTTA--A---G-TAG-GAC
gi|2 : aaaattgctgtgaaataaca-------ATTG--ACAGTT--A---TAG-----ATAAATACAGTTTGTTTC------C-AGCTTGTTCACGCTTTGACAAATA--ATGTTCTT-CA--ATAAAATAAAT----AATATGGGTTATAAT----------TAAATGCATGTAAATTGG-TTA-GTTTCACAC
gi|6 : acagggtcctactaaacagagtacttagagtacgctagagtacactggaataataaccataattctaagtaatgcaacagattatttttatttatatgctcaaataaacattattataaaataattttgcaatagatgtctcaattatttgtttttagcgatgttctaaccataaaacggcattctattacaatgtaattaaaggtttttgccatccgatcccgattattattatttggtgagaatttagcatacgtactacaacaatgatcatttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTC------C-AGCTTGTTCACGCTTTGATGAATA--ATG--CTT-CA--ATAAAGTAAACTCAAAATATGG--------GT------TATAAATG-AGGTAAATTGG-TTA-GTTTCCTA-ACACC-GT---TAC-GAT-C-TATGTTTTA-TGTT-AA-T--GTAATTGAT-------------CCGGAATCA----GCGGTAAC-CC-TAACATATGAGAGCCTAAA-TGAGACTCTAT---AAATA-ATTCCTAAAATTACTG-A-AGAGAGCAAACACA-GATATCACAATAAGAACA-CCAC-TAG--AGAGAGTGAATAG---TA-GAATG-AGG-TA--GTCA-----ACTAT-CA-GTAG-GATATATAGC-ATT-----AAAA--T----ATATTAA-T-ATT-T-TTTTCC--ATTCG-T-TTC-T-----CTAAAGT------------------------TCT--CTAAAGTACTC-T--G-TTT---AGATG-TAG-GAC
gi|7 : atgttgATGTTTTTTCA--ATAAAGTAAAT----AATATGGT---------------TATAAATGCATGTAAATTGG-TTA-GTTT--CACACACTTGTA-A---------------TTTA-TGTTAAAAT--GTAATTGATATTTGAATCGGGATCGGGATCA---AGCCGTATT-CCGTAGC-T-TGA-AGC---AA-TAC------AT-TGTAATG-ATTCCTAAAATAACTG-A-AAA---C-AACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGGTTTA-AATTA-CAGTTACAATCA-TT-CATTAATCA-GCCG-T-TAAATTGC-CTT-----AAAA--T----ATA---A-T-ATT-T-TT---C--AG-TG-T-A-C-T-----CTAAAGT-----AC-TCTAACGTAC----------TCTAAAGTACTC-T--G-TTT---A---G-TAG-GAC
gi|3 : aaatAT-TAT-TCTT-----C-AAATAAGTAAATAATA-----------ATCGG-ATCA---AGCGGTAAAATCGTAGC-T--GA-AGC---AA-TAA------AT-TGAAATA-ATTCCTATA-T-ACTG-A-AAA---CAAACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGG-TTA-AACTA-CAT-TACGATCATTT-CATTAA--A-GC-G-T-TAAA-GGC-ATT-----AAAA--T----ATA---c
gi|9 : gggtcctactaaacagagtactttagagtactttagagtaacactggataataacgatgattctaagtaatacaacagattatctttatttatatacttaataaacattattgtttttgggccatccggatcccgattattattatttggtgagaatttagcatactacacagtgatcatttcacattcgggttagtcggaaaaacttattgcagttaaaacttaaaatactcccgtaaaattgctgtgaaaacagcacaaacaattgaaattaataaataaatatgagttttgttttccagcttgttcaggtttggcaataT--GTGATTAATA------TT-TGATCAGGATTGGTCAGCGGTTTA-CTG-AAA-T-TGA-AAC---TA-TGA------ATGTGAAATA-ATTC-TAAGAT-ATTG-ATAAA---CAAA-----AATAT------------A-TTTC-ACG-TATATATTTTATAGG-TTATAGCTATCTA-TATGA-CA-TT-CATGAA-TAGGCA--T-TACATTGCTATT-----AGAA--TTTGAAAA---A-A-ATT-T------C--AA-CA-T-A-CTT-----CTAAAGT-----AC-TCTcaacctattc
gi|10 : gtgaagtA-TAA------AC-TGAAATA-ATTCCTTAAAT-GATG-A-AAA---CAAACA-A-ATTAC------------A-TTTCACAA--ATATATCTGTTAGG-TTA-AGTTA--AG-TACGGGCA-TT-AATGAA-CT-GCAG-T-TAGAGTGC-AAT-----GAAT--T-----TA---T-C-ATT-T-TC--CCCCAA-CG-T-A-C-T-----CTAAAGT-----AC-TCTAATGTAC--------------AAGTACTT-T--G-TTT---A---G-TAA-GACgttagtaggacc
gi|11 : gAT-ACTG-A-AAA---CAAACA-A-AATAT------------A-TTTC-TAA-AATATATTTAATAGG-TTA-AATTA-CAG-TACGATCA-TG-CATTAA-CA-CCAG-T-TAAATAGC-ATT-----AAAA--T----ATA---A-T-ATT-T-TT--CC--AT-CG-T-T-C-T-----CTAAAGT------------------------TCT--CTAAAGTACTC-T--G-TTT---A---G-TAG-GAc
gi|12 : ACA-ATAATGTT-----------A-TTTA--AG-TATATATAAAATAGA-T-A-AA--A-TAA-TACATTGA-TTGTATT-------TAG-C-TAAAT----AT-------AAA--T----ATG---A-T-ATTAT-TT--CC--AG-TG-T-ATC-T-----CTAAAGT-----ACCTCTAAC-TA----A-CTCTAAT---ATTACTC-T--G-TTT---A---GTTAG-GAC
gi|13 : gTAT------------A-TTTC-TGA-TATATATTTAATAGG-TTA-AAATA-CAG-TACAATCA-TT-CATTAA-CA-GCAG-T-TAAATGGC-ATT-----GAAA--T----ATA---A-T-A-T-T-TT--CC--AG-CA-T-T-C-T-----CTAAAGT-----AT-TATAACGTAC----------TCTAAAGTACTC-T--G-TTT---A---G-TAG-GACc
gi|14 : ATATATTTAATAGG-CTA-AACTA-CAG-TATGATCA-TT-CATTAA-CA-GCAG-T-TAAATAGC-ATT-----AAGA--T----ATA---A-T-ATTCT-TT--CC--AG-CG-T-A-C-T-----CTAA---------------------CGTA-CTCTA----AAGTACTC-T--G-TTT---A---G-TAG-GACc
gi|16 : agTA-AACTA--AG----GA-CA-CT-TACAAA-CA-ACGGCT-TAATTTAC--TT-----GAAT--T----ATG---A-T-ATT-T-TA--CC--CA-CG-T-A-C-T-----CTAAAGT------C-TGTAACGTACTGTAGCT----------TACTC-T--G-TTC---A---G-AAG-GACc
gi|17 : cTTA-TT-CATTAA-CA-GC-G-T-TAAATGGC-CTT-----AAAACAT----ATA---A-T-ATT-T-TT--TC--AG-GGTT-A-C-T-----CT-AAGT-----AC-TCTAACGTACT----CTCC-----AAGT-CTC-T--G-TTT---A---G-TAG-GAC
gi|18 : CAG-T-TGGATTAC-TTT-----GACA--T----ATG---A---ATT-T-TT--TT--AG-CG-C-A-C-T-----CTAAAGT-----AC-TCT--------GTA-TTCTGTTTAc
gi|15 : accgggtcctgcgtatacAG-T-TAAATTACTCTT-----GAAT--T----ATT---A-T-ATT-T-TT--CC--AG-T--T-ATC-T-----CTACA-----------------------A-CTC----TAAAGTACTC-TGAG-TTT-------G-TAG-GACattatttatattattt
gi|2 : GC-ATTACTTAGAAT--T----ATG---G-TTATT-A-TT--CC--AG-TG-T-A-C-T-----CTAG---------------------CGTA-CTCTA-----AGTACTC-T--G-TTT---A---G-TAG-GACaattttttatatggtaacacttaattaaactttgtta
gi|19 : acaggT-----GAAA-------ATA---A-T-ACT-G-TG--CC--AT----T-A-C-TAAGAATTATAGTTATTAAT-TCCA--GT---GTA-CTCTA----AAGTACTC-T--GTTTT---A---G-TAGTGACaacagattatttttatttatatgctcaaataaacattattataaaataattttgcaatagatgtctcaattatttgtttttagcgatgttctaaccataaaacggcattctattacaatgtaattaaaggtttttgccatccgatcccgattattattatttggtgagaatttagcatacgtactacaacaatgatcatttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgacagttatagataaatacagtttgtttccagcttgttcacgctttgacaaataatgttcttcaataaaataaataatatgggttataattaaatgcatgtaaattggttagtttcacac
gi|8 : ggg-----GAAT--T----ATG---G-TTATT-T-TT--CC--AG-TGCT-T-C-T-----CTAAAGT-----AC-TCTtt
gi|19 : tgggtcctactaaac-----GAAT--T----ATA---G-TTATT-AATT--CC--AG-TG-T-A-C-T-----CTAAAGT-----AC-TCTtaagctaatacaacagattatttttattcatatgcttaaaaacattattataaaataattttgcaatagttttctcaattaatttgtttttagtgatgttctaaacataaaacgcattctatttaataaaggtttttgccatccgaatcccgattattattatttggtgagaatttagcatactacaaccagtgatatctttaatcattc
gi|20 : ggggtcactactaaaacAAA--T----ATT---G-TTATT-A-TC--CT--AG-TG-T-AAC-T-----CTAAA-T-----AC-TCTAACGTAC----------TCTAAAGTACTCAT--G-TTTTGCA---G-TAG-GACttagtaatggcacagtattattttcatt
gi|3 : cggT-T-AT--CC--AG-TG-TTA-C-T-----CTAAAGT-----AC-TCT--------------------AAAGTACTC-T--G-TTT---A---G-TAG-GACataa
gi|8 : ggGTG-CT-TCTCTAAAGTACTC-T--G-TTT---A---G-TAG-GACtaacgatgattctaagtaatacaacagattatctttatttatatacttaataaacattattgtttttgggccatccggatcccgattattattatttggtgagaatttagcatactacacagtgatcatttcacattcgggttagtcggaaaaacttattgcagttaaaacttaaaatactcccgtaaaattgctgtgaaaacagcacaaacaattgaaattaataaataaatatgagttttgttttccagcttgttcaggtttggcaataattattcttcaaataagtaaataataatcggatcaagcggtaaaatcgtagctgaagcaataaattgaaataattcctatatactgaaaacaaacaaaatatatttctaatatatatttaataggttaaactacattacgatcatttcattaaagcgttaaaggcattaaaatatacaacctattc
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 111 222222222222222222222 11111 777777777777777777777777777 1 3333333333333333 111 4444444444444444444444 11 111 22222 1111 1111 111 11 11 1111 1 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11 11 1111 55555555555555555555 555555555555555555555555555555 1 555555555555555555 1111 1 111 111111 222222222222 88888888888888888888888888888888
lowQualScore : 4 222222 777 4 4 0 111 88 444444444444444444444 55 0 22222 999999999999999999999999999 0 8888888888888888 1 6 6 8 8 0 8 11 222 5 0 0 5 2222222222222222222222 11 111 0 5 00000 7777 7777 333 11 11 0 1 6666 8 8 1 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 8 11 6 88 3 1 6 99 2222 11111111111111111111 2 6 1 666 3 333333333333333333333333333333 8 0 8 0 8 6 6 1 555555555555555555 1 3333 77 3 6 6 111 5 666666 5 5 5 5 5 5 888 4 4 444444444444 4 4 88 3 3 2 55 3 2 3 3 2 2 0 2 2 3 66 444 2 33 5555 444 2 33 5 2 5 5 2 99999 00000000000000000000000000000000 3 44 3 3 555 3 3
lowQualScore : . ...... ... . . . ... .. ..................... .. . ..... ........................... . ................ . . . . . . . .. ... . . . . ...................... .. ... . . ..... .... .... ... .. .. . . .... . . . ......................................................................................................................................................... . .. . .. . . . .. .... .................... . . . ... . .............................. . . . . . . . . .................. . .... .. . . . ... . ...... . . . . . . ... . . ............ . . .. . . . .. . . . . . . . . . . .. ... . .. .... ... . .. . . . . . ..... ................................ . .. . . ... . .
lowQualScore : 4 888888 888 4 4 7 000 11 111111111111111111111 11 1 00000 111111111111111111111111111 0 6666666666666666 4 7 7 0 0 8 0 88 000 0 8 8 0 8888888888888888888888 00 888 8 6 00000 0000 0000 888 00 00 8 0 8888 0 0 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 00 4 66 5 0 7 22 1111 33333333333333333333 5 7 0 888 2 555555555555555555555555555555 0 8 0 6 0 7 7 0 000000000000000000 0 3333 77 3 7 7 777 7 444444 7 7 0 0 0 0 888 4 4 555555555555 0 0 99 6 3 3 11 3 2 1 1 9 9 1 7 7 6 11 000 5 44 3333 444 7 77 3 7 3 3 7 33333 77777777777777777777777777777777 1 22 1 1 444 1 1
consensus : GGGGTC-CT------ACT---AAA-CA-GAGTACTTTAG---AGTAC-GTTAGAG----------TA--CA-----CTGGAA-TAATAAC----CATA---------AA-T-----------T--TTCTAAGTA-ATGC-------AAC----TGATAAAA-TAA-TTTTGCAATAGTTGTC-TCAATTA-TTTGTTTTTA-GCGATGTTCTATAACCATAAAACGGCATTCT-----------AT---T----AAAGGTTTTTG--CCATCCCGATCCCGATTATTATTATT-----ATTTGGTGAGAATTTAGCA----TA----CTAC-ACCAG--TG--ATCATTTCA---TCATTC-GGGTTAGTCGGAAAAACTATCAAGNTCCACNATNGAGAGANGTATCGCGGTTAA-TAACNAGNTTAAAATAGCTCCCGCGCAAT-GC-GTAAAAT----TGC-GTGAAA---ACG-----ACATTGACAATT-------A---TAAATA---AGT-C----CG--------TTTCC-AGCTTGTTCACGCTTTGA--CGAATA-AATGTTCTT-CAATA--AAGTAAAT----AATATGGNTT----T--------TA--TAAATGCA-TGTAAATTGGTT-A-GTTTCACA-------CACACCTG-TA-ATAC-GCTAT-TAT-TTTTAT-GTTAAA-ATG-TAAT-TGATA------TTTGA-------TCGGGATCA---AGCGGTAAN-CCGTAGC-T-TGA-AGC---AA-TAA------AT-TGAAATA-ATTCCTAAAA-T-ACTG-A-A---AACAAACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGG-TTA-AACTA-CAG-TACGATCA-TT-CATTAA-CA-GCAG-T-TAAATNGC-ATT--AAA-A--T----A---TAA-TA--TT-TTTCCA-GCG-TA-C-T-----CTAAAGT-----AC-TCTAACGTA-C---A-CTC--TCTAA-AGTACTCT--G-TTT-A---G-TAG-GAC
Reference ( family-8214 ) : GGGGTC-CT------ACT---AAA-CA-GAGTACTTTAG---AGTAC-GTTAGAG----------TA--CG-----CTGGAA-TAATAAC----CATA---------AA-T-----------T--TTCTAAGTA-ATGC-------AAC----TGATAAAA-TAA-TTTTGCAATAGTTGTC-TCAATTA-TTTGTTTTTA-GCGATGTTCTATAACCATAAAACGGCATTCT-----------AT---T----AAAGGTTTTTG--CCATCCCGATCCCGATTATTATTATT-----ATTTGGTGAGAATTTAGCA----TA----CTAC-ACCAG--TG--ATCATTTNA---TCATTC-GGGTTAGTCGGAAAANCTATCAAGTTCTATCATAGAGAGAGANATCGCGGTTAA-TAACGAGNNNAGAATAGCTCCCGCGCAATAGC-GTAAAAT----TGC-GTGAAA---ACG-----ACATTGACNATT-------A---TAAATG---A--------CG--------TTTCC-AGCTTGTTCACGCTTTGA--CGAATA-AATGTTCTT-CAATA--AAGTAAAT----AATATGGNTT----T--------TA--TAAATGCA-TGTAAATTGGTT-A-GTTTCACA-------CACACNTG-TA-ATAC-G-TAT-TAT-TTTTAT-GTTAAA-ATG-TAAT-TGATA-----ATTTGA-------TCGGGATCA---AGCGGTAAN-CCGTAGC-T-TGA-AGC---AA-TAA------AT-TGAAATA-ATTCCTAAAA-T-ACTG-A-A---AACAAACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGG-TTA-AACTA-CAG-TACGATCA-TT-CATTAA-CA-GCAG-T-TAAATNGC-ATT--GAA-A--T----A---TAA-TA--TT-TTTCCA-GCG-TA-C-T-----CTAAAGT-----AC-TCTAACGTA-C-GTA-CTC--TCTAA-AGTACTCT--G-TTT-A---G-TAG-GAC
gi|1 : GGGGTC-CT------ACT---AAA-CA-GAGTACTTTAG---AGTAC-GTTAGAG----------TA--CA-----CTGGAA-TAATAAC----CATA---------AAAT-----------T--TTCTAAGTA-ATGC-------AAC----TGATAAAAATAA-TTTTGCAATAGTTGTC-TCAATCA-TTTGTTTTTA-GCGGTGTTCTATAACCATAAAACGGCATTCT-----------AT---T----AAAGGTTTTTG--CCATCCCGATCAAGATTATTATTATTTGATAATTTGGTGAGAATTTAGCA----TA----CTAC-ACCAG--TG--ATCATTTCA---TCATTCTGGGCT-CTCGGAAAAACT-TCAAAATTCACAATCGA---ATGTATTGCAGTTAGTTAACTAGCTTAAAATA-CTC-----------C-GT-AAAT----TGC-AT-AAA---ACA-----ACATTGACTATT-------A---TAAA---------------G--------TTTTC-AGCTTGTTCACGCTTTGA--CGAATATAATGTTCTT-CAATA--AAGTAAAT----AATATGGTTTACAATGTACAATGTA--TAAATGCA-TGTAAATTAGTT-A-GTTTCACA-------CACACCTG-TA-ATAC-GCTAT-TAT-TTTTAT-GTT-AA-ATG-TAAT-TGATACCGGTATTTGA-------TCGGGATCA---AGCGGTAAA-CCGTAGC-T-TGA-AGC---AA-TAA------AT-TGAAATA-ATTCCTAAAA-T-ACTG-A-A---AACAAACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGG-TTA-AACTA-CAG-TACGATCA-TT-CATTAA-CA-GCAG-T-TAAATGGC-ATT--GAA-A--T----A---TAA-TA--TT-TTTCCA-GCG-TA-C-T-----CTAAAGT-----AT-TCTAACGTACC-GTA-CTCTATTTAA-AGTACTCT--G-TTT-A---G-TAG-GAC
gi|10 : A-TAA------AC-TGAAATA-ATTCCTTAAA-T-GATG-A-A---AACAAACA-A-ATTAC------------A-TTTCACAA--ATATATCTGTTAGG-TTA-AGTTA--AG-TACGGGCA-TT-AATGAA-CT-GCAG-T-TAGAGTGC-AAT--GAATT--T----A---TCA-TT--TT-CCCCCA-ACG-TA-C-T-----CTAAAGT-----AC-TCTAATGTA-C--------------A-AGTACTTT--G-TTT-A---G-TAA-GAC
gi|11 : gA-T-ACTG-A-A---AACAAACA-A-AATAT------------A-TTTC-TAA-AATATATTTAATAGG-TTA-AATTA-CAG-TACGATCA-TG-CATTAA-CA-CCAG-T-TAAATAGC-ATT--AAA-A--T----A---TAA-TA--TT-TTTCCA-TCG-TT-C-T-----CTAAAGT-------------------------TC--TCTAA-AGTACTCT--G-TTT-A---G-TAG-GAc
gi|12 : ACA-ATAATGTT-----------A-TTTA--AG-TATATATAAAATAGA-T-A-AA--A-TAA-TACATTGA-TTGTATT-------TAG-C-TAAAT----AT----AA-A--T----A---TGA-TA--TTATTTCCA-GTG-TATC-T-----CTAAAGT-----ACCTCTAAC-TA-----A-CTC--T--AATATTACTCT--G-TTT-A---GTTAG-GAC
gi|13 : gTAT------------A-TTTC-TGA-TATATATTTAATAGG-TTA-AAATA-CAG-TACAATCA-TT-CATTAA-CA-GCAG-T-TAAATGGC-ATT--GAA-A--T----A---TAA-TA---T-TTTCCA-GCA-TT-C-T-----CTAAAGT-----AT-TATAACGTA---------C--TCTAA-AGTACTCT--G-TTT-A---G-TAG-GACc
gi|14 : ATATATTTAATAGG-CTA-AACTA-CAG-TATGATCA-TT-CATTAA-CA-GCAG-T-TAAATAGC-ATT--AAG-A--T----A---TAA-TA--TTCTTTCCA-GCG-TA-C-T-----CTAA---------------------C-GTA-CTC--T--AA-AGTACTCT--G-TTT-A---G-TAG-GACc
gi|15 : agAG-T-TAAATTACTCTT--GAA-T--T----A---TTA-TA--TT-TTTCCA-GT--TATC-T-----CTA--------------CAA-------------C--TCTAA-AGTACTCTGAG-TTT-----G-TAG-GACc
gi|16 : TA-AACTA--AG----GA-CA-CT-TACAAA-CA-ACGGCT-TAATTTAC--TT--GAA-T--T----A---TGA-TA--TT-TTACCC-ACG-TA-C-T-----CTAAAGT------C-TGTAACGTA-CTGTAGCT-----------TACTCT--G-TTC-A---G-AAG-GACaattttttatatggtaacacttaattaaactttgtta
gi|17 : cTTA-TT-CATTAA-CA-GC-G-T-TAAATGGC-CTT--AAA-ACAT----A---TAA-TA--TT-TTTTCA-GGGTTA-C-T-----CT-AAGT-----AC-TCTA----A-C-GTA-CTC--TCC-A-AGT-CTCT--G-TTT-A---G-TAG-GAC
gi|18 : GGGTC-CTGCGTATACT---AAA-CA-GAATAC---AG---AGTAC-TTTAGAG----------TG--CG-----CTAAAA-AAAT--T----CATA------------------------T--GTCAAAGTA-ATCC-------AAC----TGATc
gi|19 : accGGGGTCACT------ACT---AAAACA-GAGTACT--------------TTAGAG----------TA--CA-----CTGGAATTAATAAC----TATA---------A-----------------TTCTTAGTA-ATGtatttatattattt
gi|19 : T--GAA-A-------A---TAA-TA--CT-GTGCCA-T---TA-C-TAAGAATTATAGTTATTAAT-TCCAGTGTA-C----------TCTAA-AGTACTCT--GTTTT-A---G-TAGTGACgcacagtattattttcatt
gi|2 : gggGGGTC-CT------ACT---AAA-CA-GAGTACTT-AG---AGTAC-GCTAGAG----------TA--CA-----CTGGAA-TAATAAC----CATAATTCTAAGTAA-TGCAACAGATTAT--TTTTATTTATATGCTCAAATAAACATTATTATAAAA-TAA-TTTTGCAATAGATGTC-TCAATTA-TTTGTTTTTA-GCGATGTTC--TAACCATAAAACGGCATTCTATTACAATGTAAT---T----AAAGGTTTTTG--CCAT-CCGATCCCG---ATTATTATT-----ATTTGGTGAGAATTTAGCATACGTA----CTAC-AACAA--TG--ATCATTTCANNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN----NNN-NNNNNN---NNN-----NNATTGACAGTT-------A---TAGATA---AATACAGTTTG--------TTTCC-AGCTTGTTCACGCTTTGA--CAAAT--AATGTTCTT-CAATA--AAATAAAT----AATATGGGTT----A--------TAATTAAATGCA-TGTAAATTGGTT-A-GTTTCACA-------Ctt
gi|20 : acaGGGTC-CT------ACTGCAAAA-CATGAGTACTTTAG---AGTAC-GTTAGAGTATTTAGAGTTA--CA-----CTAGGA-TAATAAC----AATA------------------------T--TTATAA
gi|21 : cTTAA-TA-GTAT-T-TAA-TAGT-ATTCAAAA-A--T----A---TGA-AA--TT-TTACCA-GTG-TA-C-G-----CTAACGT-----AC-TCT
gi|21 : aatGGTA-CT------ACT---AAA-CA-GAGTACGTTAG---CGTAC-ACTGGgtttagtagtacc
gi|3 : aatttaatagtatttaatagtattcaaaaatatgaaattttaGGGTC-CT------ACT---AAA-CA-GAGTACTTTAG---AGTAC-TTTAGAG----------TAA-CA-----CTGGA--TAATAAC----GATG---------A-----------------TTCTAAGTA-ATAC-------AAC----AGA---------------------TTATC-T---TTA-TTT-----------ATATACT-TAA---TAAA----CATT-------------AT---T--------GTTTTTGGGCCATCCGGATCCCGATTA---TTATT-----ATTTGGTGAGAATTTAGCA----TA----CTAC-A-CAG--TG--ATCATTTCA----CATTC-GGGTTAGTCGGAAAAACT------------------------TATTGCAGTTAA--AAC----TTAAAATA-CTCC----------C-GTAAAAT----TGCTGTGAAA---ACA-----GCACAAACAATTGAAATTAA---TAAATAAATA--------TGAGTTTTGTTTTCC-AGCTTGTTCA-GGTTTGG--C-AATA-ATTATTCTT-CAAAT--AAGTAAAT----AATA
gi|3 : AAAC----AAT-TGAAAT----T--------AA--TAAATAAA-TATGAGTT--TT-G-TTTTC-CAGCTTGTTCAGGTTTGGCA-ATA-----AT-TAT-TCTT-----CAAATAAG-TAA----ATA-----AT--AA-------TCGG-ATCA---AGCGGTAAAATCGTAGC-T--GA-AGC---AA-TAA------AT-TGAAATA-ATTCCTATA--T-ACTG-A-A---AACAAACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGG-TTA-AACTA-CAT-TACGATCATTT-CATTAA--A-GC-G-T-TAAA-GGC-ATT--AAA-A--T----A---TAatcggatcaagcggtaaaatcgtagctgaagcaataaattgaaataattcctatatactgaaaacaaacaaaatatatttctaatatatatttaataggttaaactacattacgatcatttcattaaagcgttaaaggcattaaaatatacaacctattc
gi|4 : gggtcctactaaacagagtactttagagtactttagagtaacactggataataacgatgattctaagtaatacaacagattatctttatttatatacttaataaacattattgtttttgggccatccggatcccgattattattatttggtgagaatttagcatactacacagtgatcatttcacattcgggttagtcggaaaaacttattgcagttaaaacttaaaatactcccgtaaaattgctgtgaaaacagcacAATTGCTGTGAAATAACATGC-AT-AAA---ACG-----A-ATTGACAATT-------AAAATAAATGT--AGTTT----CG--------TTTCCCAGCTTGTTCACGCTTTGAAGCAAATA-A-TATT-TT-AAATATAAAGTAAAT----AATATTGCTT----T---------A--TAA-TGCAATGTAAATTGGTTTATGTTTCACA--------ACACATG-TAGATACTGCTATGTAT-TTTTATTGTTAAA-ATGGTAATGTTATA------TTTG--------TCGGGATCA---AGCGGTAAT-TCGTAGCTT-TGA-AGC---AATTAA------AT-TGAAATAGATTCCTAAAA-T-ACTGAA-A---AATAAACA-A-AATAT------------ATTTTC-TAAGCATATA-TTAATAGG-CTA-AACTA-CAG--ACG--C--TT-CATT-A-CA-GCAG-T-T-AATGGA-TTT--AAA-A--T--------TAACTA--TT-ATTCCC-ACG-TA-C-TC----CTAATGT-----AC-TCTA--------------------AA-AGTACTCT--G-TTTAA---G-TAG-GACcaacctattc
gi|5 : aaTTAC---AGTAT--TTAGAG----------TA--CA-----C--GGA-TATTAACAGCCCATA---------A--------------T--TCCTAAGTA-ATGC-------AAC----TG----AA-TAA-TTTT
gi|5 : gagccg-ATGC-------A-C------ATAACA-CAAATTGTGCAATATTTGTCCTCAATTA-TT-GTTTTTAAGCGATG--CTAGAACCA-AAAACGGCATTCT-----------ATAAGT----AAAAAGTTTTG--CCATCCCGCGTCCGATTATT--TATT-----ATTTGGTGAGAATTTGGCA----TAGCGACCAC--CCAGGGTG--ATCATATAT---TCATTC-GGGTT-GTCGGAAAACCTATCAAGTTCTATCATAGAGAGAGAGATCACGATT-A-TAACGAGGAGAGAATAGCT-CCGCGCAATAGC-GTAAATTCCA-TGG-GTAAAAAATACGCATAAACATTGACTAatttatatgcttaaattatatacatgcacataacacaaattgtgcaatatttgtcctcaattattgtttttaagcgatgctagaaccaaaaacggcattctataagtaaaaagttttgccatcccgcgtccgattatttattatttggtgagaatttggcatagcgaccacccagggtgatcatatattcattcgggttgtcggaaaacctatcaagttctatcatagagagagagatcacgattataacgaggagagaatagctccgcgcaatagcgtaaattccatgggtaaaaaatacgcataaacattgacta
gi|6 : gagccgttacagtatttagagtacacggatattaacagcccataattcctaagtaatgcaactgaataattttatttatatgcttaaattatatacTTCC-AGCTTGTTCACGCTTTGA--TGAAT--AATG--CTT-CAATA--AAGTAAACTCAAAATATGGG------T--------TA--TAAATG-A-GGTAAATTGGTT-A-GTTTCCTA--------ACACC-G-T---TAC-G--ATCTATGTTTTAT-GTT--A-ATG-TAAT-TGAT-------------------CCGGAATC----AGCGGTAAC-CC-TAACATATGAGAGCCTAAA-TGAGACTCTAT---AAATA-ATTCCTAAAATT-ACTG-A-AGAGAGCAAACACA-GATATCACAATAAGAACA-CCAC-TAG--AGAGAGTGAATAG---TA-GAATG-AGG-TA--GTCA-----ACTAT-CA-GTAG-GATATATAGC-ATT--AAA-A--T----ATATTAA-TATTTT-TTTCCATTCGTTT-C-T-----CTAAAGT-------------------------TC--TCTAA-AGTACTCT--G-TTT-AGATG-TAG-GAC
gi|7 : atgttgATGTTTTTTCAATA--AAGTAAAT----AATATGG-------T--------TA--TAAATGCA-TGTAAATTGGTT-A-GTTTCACA-------CAC--TTG-TA-AT---------------TTAT-GTTAAA-ATG-TAAT-TGATA------TTTGAATCGGGATCGGGATCA---AGCCGTATT-CCGTAGC-T-TGA-AGC---AA-TAC------AT-TGTAATG-ATTCCTAAAA-TAACTG-A-A---AAC-AACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGGTTTA-AATTA-CAGTTACAATCA-TT-CATTAATCA-GCCG-T-TAAATTGC-CTT--AAA-A--T----A---TAA-TA--TT-TTT-CA-GTG-TA-C-T-----CTAAAGT-----AC-TCTAACGTA---------C--TCTAA-AGTACTCT--G-TTT-A---G-TAG-GAC
gi|8 : aaatGGGTC-CT------ACT---AAA-CA-GAGTACTTTAGAGAAGCACTGGAAAAA----------TAACCATAATTCTAAGC-TAATA-C----AACA---------GA-T-----------TATTTTTATTCATATGCTTAAA--AACATTATTATAAAA-TAA-TTTTGCAATAGTTTTC-TCAATTAATTTGTTTTTA-GTGATGTTCTA-AAC-ATAAAACG-CATTCT-----------AT---TTAATAAAGGTTTTTG--CCATCCGAATCCCG---ATTATTATT-----ATTTGGTGAGAATTTAGCA----TA----CTACAACCAG--TGATATC-TTTAA---TCATTC-c
gi|9 : tTG-TGAT-TAATA------TTTGA-------TCAGGATTGGTCAGCGGTTTA-CTG-AAA-T-TGA-AAC---TA-TGA------ATGTGAAATA-ATTC-TAAGA-T-ATTG-ATA---AACAAA-----AATAT------------A-TTTC-ACG-TATATATTTTATAGG-TTATAGCTATCTA-TATGA-CA-TT-CATGAA-TAGGCA--T-TACATTGCTATT--AGA-A--TTTGAA---AAA-AA--TT-T---CA-ACA-TA-CTT-----CTAAAGT-----AC-TCT
gi|9 : gtgaagtGGTC-CT------ACT---AA--CA-GAGTACTTTAGA--AGTAT-GTTgttagtaggacc
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 2222222222 11111 111111 777777777777777777777777777 2222222222222222 111 4444444444444444444444 11 111 22222 222222222 111 11 11 11 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 11 1111 55555555555555555555 22222222 333333333333333 444444444444444444 1111 111 111 111111 222222222222 55555555555
lowQualScore : 4 111111 777 4 55 4 3 3 55 8888888888 99 00000 4 000000 2 777777777777777777777777777 4 8 9999999999999999 0 6 6 8 8 0 8 11 222 5 0 0 5 2222222222222222222222 11 111 0 5 00000 555555555 333 11 11 0 2 8 77 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 8 11 6 88 3 1 6 99 2222 11111111111111111111 2 6 1 666 7 88888888 22 444444444444444 8 0 8 0 88 6 6 333333333333333333 1 3333 77 6 222 6 111 5 666666 5 5 5 5 5 888 5 4 4 444444444444 4 4 88 3 3 2 55 3 2 3 3 2 2 0 2 2 3 2 33 2 33 6666 555 3 44 6 3 6 3 3 3 555 11 22222222222 2 3 3 666 3
lowQualScore : . ...... ... . .. . . . .. .......... .. ..... . ...... . ........................... . . ................ . . . . . . . .. ... . . . . ...................... .. ... . . ..... ......... ... .. .. . . . .. ........................................................................................................................................................... . .. . .. . . . .. .... .................... . . . ... . ........ .. ............... . . . . .. . . .................. . .... .. . ... . ... . ...... . . . . . ... . . . ............ . . .. . . . .. . . . . . . . . . . . .. . .. .... ... . .. . . . . . . ... .. ........... . . . ... .
lowQualScore : 0 555555 000 0 55 0 6 6 55 5555555555 55 00000 0 444444 9 111111111111111111111111111 4 9 9999999999999999 1 7 7 0 0 8 0 88 000 0 8 8 0 8888888888888888888888 00 888 8 6 00000 000000000 888 00 00 8 8 0 00 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 00 4 66 5 0 7 22 1111 33333333333333333333 5 7 0 888 2 33333333 22 222222222222222 0 8 0 8 88 7 7 555555555555555555 0 3333 77 7 555 7 777 7 444444 7 7 0 0 0 888 0 4 4 555555555555 0 0 99 6 3 3 11 3 2 1 1 9 9 8 9 9 8 9 99 9 99 1111 000 1 22 2 1 2 1 1 1 555 99 77777777777 8 6 6 444 6
consensus : GGGGTC-CT------ACT---AAA-C--A-GAGTACTTTAG-AGTA-CGTTAGAG----------TA--CA-----CTGGAA-TAATAA----CNATA---------A--------------T--TTCTA-AGTA-ATGC-------AAC----TGATAAAA-TAA-TTTTGCAATAGTTGTC-TCAATTA-TTTGTTTTTA-GCGATGTTCTATAACCATAAAACGGCATTCT-----------AT---T----AAAGGTTTTTG--CCATCCCGATCCCGATTATTATTATT-----ATTTGGTGAGAATTTAGCA----T----ACTAC-ACCA--GTG--ATCATTTCATCATTC-GGGTTNGTCGGAAAAACTATCAAGNTCCACNATNGAGAGANGTATCGCGGTTAAT-AACNAGNTTAAAATAGCTCCCGCGCAAT-GC-GTAAAAT----TGC-GTGAAA---ACG-----ACATTGA----CAATT-------A---TAAATA-----AGTT-CG--------TTTCC-AGCTTGTTCACGCTTTGA--CGAATA-AATGTTCTT-CAATA--AAGTAAAT----AATATGGNTT-----------T-TA--TAAATGCA-TGTAAATTGGTT-A-GTTTCACA-------CACACCTG-TA-ATAC-GCTAT-TAT-TTTTAT-GTTAAA-ATG-TAAT-TGATA------TTT-------GATCGGGATCA---AGCGGTAAN-CCGTAGC-T-T-GA-AGC---AAT-AA------AT-TGAAATA-ATTCCTAAAA-T-ACTGA-A---AA-CAAACA-A-AATAT------------ATTT-C-TAA-TATATATTTAATAGG-TTA-AACTA-CAG-TACGATCA-TT-CATTAA-CA-GCAG-T-TAAATNGC-ATT--AAA-A--T----A---TAA-TA--TT-TTTCCA-GCG-TA-C-TC-TAAAGTAC-TCTAACGTA------TC--TCTAA-AGTACTCTGTTT-A---G-TAGGAC
Reference ( family-8214 ) : GGGGTC-CT------ACT---AAA-C--A-GAGTACTTTAG-AGTA-CGTTAGAG----------TA--CA-----CTGGAA-TAATAA----CCATA---------AA-T-----------T--TTCTA-AGTA-ATGC-------AAC----TGATAAAA-TAA-TTTTGCAATAGTTGTC-TCAATTA-TTTGTTTTTA-GCGATGTTCTATAACCATAAAACGGCATTCT-----------AT---T----AAAGGTTTTTG--CCATCCCGATCCCGATTATTATTATT-----ATTTGGTGAGAATTTAGCA----T----ACTAC-ACCA--GTG--ATCATTTCATCATTC-GGGTTAGTCGGAAAAACTATCAAGNTCCACNATNGAGAGANGTATCGCGGTTAAT-AACNAGNTTAAAATAGCTCCCGCGCAAT-GC-GTAAAAT----TGC-GTGAAA---ACG-----ACATTGA----CAATT-------A---TAAATA-----AGTC-CG--------TTTCC-AGCTTGTTCACGCTTTGA--CGAATA-AATGTTCTT-CAATA--AAGTAAAT----AATATGGNTT-----------T-TA--TAAATGCA-TGTAAATTGGTT-A-GTTTCACA-------CACACCTG-TA-ATAC-GCTAT-TAT-TTTTAT-GTTAAA-ATG-TAAT-TGATA------TTT-------GATCGGGATCA---AGCGGTAAN-CCGTAGC-T-T-GA-AGC---AAT-AA------AT-TGAAATA-ATTCCTAAAA-T-ACTGA-A---AA-CAAACA-A-AATAT------------ATTT-C-TAA-TATATATTTAATAGG-TTA-AACTA-CAG-TACGATCA-TT-CATTAA-CA-GCAG-T-TAAATNGC-ATT--AAA-A--T----A---TAA-TA--TT-TTTCCA-GCG-TA-C-TC-TAAAGTAC-TCTAACGTAC---ACTC--TCTAA-AGTACTCTGTTT-A---G-TAGGAC
gi|1 : GGGGTC-CT------ACT---AAA-C--A-GAGTACTTTAG-AGTA-CGTTAGAG----------TA--CA-----CTGGAA-TAATAA----CCATA---------AAAT-----------T--TTCTA-AGTA-ATGC-------AAC----TGATAAAAATAA-TTTTGCAATAGTTGTC-TCAATCA-TTTGTTTTTA-GCGGTGTTCTATAACCATAAAACGGCATTCT-----------AT---T----AAAGGTTTTTG--CCATCCCGATCAAGATTATTATTATTTGATAATTTGGTGAGAATTTAGCA----T----ACTAC-ACCA--GTG--ATCATTTCATCATTCTGGGCTC-TCGGAAAAACT-TCAAAATTCACAATCGA---ATGTATTGCAGTTAGTTAACTAGCTTAAAATA-CTCC------------GTAAA-T----TGC-AT-AAA---ACA-----ACATTGA----CTATT-------A---TAAA-------------G--------TTTTC-AGCTTGTTCACGCTTTGA--CGAATATAATGTTCTT-CAATA--AAGTAAAT----AATATGGTTTACAATGTACAATGTA--TAAATGCA-TGTAAATTAGTT-A-GTTTCACA-------CACACCTG-TA-ATAC-GCTAT-TAT-TTTTAT-GTTAAA--TG-TAAT-TGATACCGGTATTT-------GATCGGGATCA---AGCGGTAAA-CCGTAGC-T-T-GA-AGC---AAT-AA------AT-TGAAATA-ATTCCTAAAA-T-ACTGA-A---AA-CAAACA-A-AATAT------------ATTT-C-TAA-TATATATTTAATAGG-TTA-AACTA-CAG-TACGATCA-TT-CATTAA-CA-GCAG-T-TAAATGGC-ATT--GAA-A--T----A---TAA-TA--TT-TTTCCA-GCG-TA-C-TC-TAAAGTAT-TCTAACGTACCGTACTCTATTTAA-AGTACTCTGTTT-A---G-TAGGAC
gi|10 : AT-AA------AC-TGAAATA-ATTCCTTAAA-T-GATGA-A---AA-CAAACA-A-ATTAC------------ATTT-CACAA--ATATATCTGTTAGG-TTA-AGTTA--AG-TACGGGCA-TT-AATGAA-CT-GCAG-T-TAGAGTGC-AAT--GAATT--T----A---TCA-TT--TT-CCCCCA-ACG-TA-C-TC-TAAAGTAC-TCTAATGTAC-------------A-AGTACTTTGTTT-A---G-TAAGAC
gi|11 : gA-T-ACTGA-A---AA-CAAACA-A-AATAT------------ATTT-C-TAA-AATATATTTAATAGG-TTA-AATTA-CAG-TACGATCA-TG-CATTAA-CA-CCAG-T-TAAATAGC-ATT--AAA-A--T----A---TAA-TA--TT-TTTCCA-TCG-TT-C-TC-TAAAGT------------------TC--TCTAA-AGTACTCTGTTT-A---G-TAGGAc
gi|12 : ACA-ATAATGTT-----------ATTT-A--AG-TATATATAAAATAGA-T-A-AA--A-TAA-TACATTGA-TTGTATT-------TAG-C-TAAAT----AT----AA-A--T----A---TGA-TA--TTATTTCCA-GTG-TATC-TC-TAAAGTACCTCTAAC-TA----ACTC--T--AATATTACTCTGTTT-A---GTTAGGAC
gi|13 : gTAT------------ATTT-C-TGA-TATATATTTAATAGG-TTA-AAATA-CAG-TACAATCA-TT-CATTAA-CA-GCAG-T-TAAATGGC-ATT--GAA-A--T----A---TAA-TA---T-TTTCCA-GCA-TT-C-TC-TAAAGTAT-TATAACGTA-------C--TCTAA-AGTACTCTGTTT-A---G-TAGGACc
gi|14 : ATATATTTAATAGG-CTA-AACTA-CAG-TATGATCA-TT-CATTAA-CA-GCAG-T-TAAATAGC-ATT--AAG-A--T----A---TAA-TA--TTCTTTCCA-GCG-TA-C-TC-TAA-----------CGTAC---------TCTAA-AGTACTCTGTTT-A---G-TAGGACc
gi|15 : agGTC-CT------AC----AAA-CTCA-GAGTACTTTAG-AGT--TG-TAGAGA---------TA---A-----CTGGAA-AAAT-A----TAATA---------A-----------------TTCAAGAGTA-ATTT-------AAC----TAATc
gi|16 : TA-AACTA--AG----GA-CA-CT-TACAAA-CA-ACGGCT-TAATTTAC--TT--GAA-T--T----A---TGA-TA--TT-TTACCC-ACG-TA-C-TC-TAAAGT-C-TGTAACGTA-------C--TGTAG-CTTACTCTGTTC-A---G-AAGGACtttttatatggtaacacttaattaaactttgtta
gi|17 : cTTA-TT-CATTAA-CA-GC-G-T-TAAATGGC-CTT--AAA-ACAT----A---TAA-TA--TT-TTTTCA-GGGTTA-C-TC-T-AAGTAC-TCTAACGT-----ACTC--TCC-A-AGT-CTCTGTTT-A---G-TAGGAC
gi|18 : GGGTC-CTGCGTATACT---AAA-C--A-GAATAC---AG-AGTA-CTTTAGAG----------TG--CG-----CTAAAA-AAAT------TCATA------------------------T--GTCAA-AGTA-ATCC-------AAC----TGATc
gi|19 : accGGGGTCACT------ACT---AAAAC--A-GAGTACTTTAG-AGTA-C----------------------A-----CTGGAATTAATAA----CTATA---------A-----------------TTCTT-AGTA-ATGtatttatattattt
gi|2 : GGGTC-CT------ACT---AAA-C--A-GAGTACTT-AG-AGTA-CGCTAGAG----------TA--CA-----CTGGAA-TAATAA----CCATAATTCTAAGTAA-TGCAACAGATTAT--TTTTA-TTTATATGCTCAAATAAACATTATTATAAAA-TAA-TTTTGCAATAGATGTC-TCAATTA-TTTGTTTTTA-GCGATGTTC--TAACCATAAAACGGCATTCTATTACAATGTAAT---T----AAAGGTTTTTG--CCAT-CCGATCCCG---ATTATTATT-----ATTTGGTGAGAATTTAGCATACGT----ACTAC-AACA--ATG--ATCATTTCANNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN-NNNNNNN----NNN-NNNNNN---NNN-----NNNNNNATTGACAGTT-------A---TAGATAAATACAGTT-TG--------TTTCC-AGCTTGTTCACGCTTTGA--CAAAT--AATGTTCTT-CAATA--AAATAAAT----AATATGGGTT-----------A-TAATTAAATGCA-TGTAAATTGGTT-A-GTTTCACA-------Cgcacagtattattttcatt
gi|20 : acaGGGTC-CT------ACTGCAAAA-C--ATGAGTACTTTAG-AGTA-CGTTAGAGTATTTAGAGTTA--CA-----CTAGGA-TAATAA----CAATA------------------------T--TTATA-A
gi|21 : cTTAA-TA-GTAT-T-TAA-TAGT-ATTCAAAA-A--T----A---TGA-AA--TT-TTACCA-GTG-TA-C-GC-TAACGTAC-TCT
gi|21 : aatGGTA-CT------ACT---AAA-C--A-GAG-----------TA-CGTTAGCG----------TA--CA-----CTGGTA-AAATgtttagtagtacc
gi|3 : aatttaatagtatttaatagtattcaaaaatatgaaGGGTC-CT------ACT---AAA-C--A-GAGTACTTTAG-AGTA-CTTTAGAG----------TAA-CA-----CTGGA--TAATAA----CGATG---------A-----------------TTCTA-AGTA-ATAC-------AAC----AGA---------------------TTATC-T---TTA-TTT-----------ATATACT-TAA---TAAA----CATT-------------AT---T--------GTTTTTGGGCCATCCGGATCCCGATTA---TTATT-----ATTTGGTGAGAATTTAGCA----T----ACTAC-A-CA--GTG--ATCATTTCA-CATTC-GGGTTAGTCGGAAAAACT------------------------TATTGCAGTTAA--AAC----TTAAAATA-CTCC----------C-GTAAAAT----TGCTGTGAAA---ACA-----GCACAAA----CAATTGAAATTAA---TAAATA-----AATA-TGAGTTTTGTTTTCC-AGCTTGTTCA-GGTTTGG--C-AATA-ATTATTCTT-CAAAT--AAGTAAAT----AATA
gi|3 : AAAC----AAT-TGAAAT-----------T-AA--TAAATAAA-TATGAGTT--TT-G-TTTTC-CAGCTTGTTCAGGTTTGGCA-ATA-----AT-TAT-TCTT-----CAAATAAG-TAAA-TAATA-----------------ATCGG-ATCA---AGCGGTAAAATCGTAGC-T---GA-AGC---AAT-AA------AT-TGAAATA-ATTCCTATA--T-ACTGA-A---AA-CAAACA-A-AATAT------------ATTT-C-TAA-TATATATTTAATAGG-TTA-AACTA-CAT-TACGATCATTT-CATTAA--A-GC-G-T-TAAA-GGC-ATT--AAA-A--T----A---TAatcggatcaagcggtaaaatcgtagctgaagcaataaattgaaataattcctatatactgaaaacaaacaaaatatatttctaatatatatttaataggttaaactacattacgatcatttcattaaagcgttaaaggcattaaaatatacaacctattc
gi|4 : gggtcctactaaacagagtactttagagtactttagagtaacactggataataacgatgattctaagtaatacaacagattatctttatttatatacttaataaacattattgtttttgggccatccggatcccgattattattatttggtgagaatttagcatactacacagtgatcatttcacattcgggttagtcggaaaaacttattgcagttaaaacttaaaatactcccgtaaaattgctgtgaaaacagcacT-GCTGTGAAATAACATGC-AT-AAA---ACG-----A-ATTGA----CAATT-------AAAATAAATGT----AGTTTCG--------TTTCCCAGCTTGTTCACGCTTTGAAGCAAATA-A-TATT-TT-AAATATAAAGTAAAT----AATATTGCTT-----------T--A--TAA-TGCAATGTAAATTGGTTTATGTTTCACA--------ACACATG-TAGATACTGCTATGTAT-TTTTATTGTTAAA-ATGGTAATGTTATA------TTT-------G-TCGGGATCA---AGCGGTAAT-TCGTAGC-T-TTGA-AGC---AATTAA------AT-TGAAATAGATTCCTAAAA-T-ACTGA-A---AAATAAACA-A-AATAT------------ATTTTC-TAAGCATATATT-AATAGG-CTA-AACTA-CAG--ACG--C--TT-CATTA--CA-GCAG-T-TAA-TGGA-TTT--AAA-A--T--------TAACTA--TT-ATTCCC-ACG-TA-C-TCCTAATGTAC-TCTAA------------------A-AGTACTCTGTTTAA---G-TAGGACcaacctattc
gi|5 : aaaatTTAC-AGTA-T-TTAGAG----------TA--CA-----C--GGA-TATTAACAGCCCATA---------A--------------T--TCCTA-AGTA-ATGC-------AAC----TG----AA-TAA-TTTT
gi|5 : gagccg-ATGC-------A-C------ATAACA-CAAATTGTGCAATATTTGTCCTCAATTA-TT-GTTTTTAAGCGATG--CTAGAACCA-AAAACGGCATTCT-----------ATAAGT----AAAAAGTTTTG--CCATCCCGCGTCCGATTATT--TATT-----ATTTGGTGAGAATTTGGCA----TAGCGACCAC--CCAGGGTG--ATCATATATTCATTC-GGGTT-GTCGGAAAACCTATCAAGTTCTATCATAGAGAGAGAGATCACGATT-AT-AACGAGGAGAGAATAGCT-CCGCGCAATAGC-GTAAATTCCA-TGG-GTAAAAAATACGCATAAACATTGA----Catttatatgcttaaattatatacatgcacataacacaaattgtgcaatatttgtcctcaattattgtttttaagcgatgctagaaccaaaaacggcattctataagtaaaaagttttgccatcccgcgtccgattatttattatttggtgagaatttggcatagcgaccacccagggtgatcatatattcattcgggttgtcggaaaacctatcaagttctatcatagagagagagatcacgattataacgaggagagaatagctccgcgcaatagcgtaaattccatgggtaaaaaatacgcataaacattgacta
gi|6 : gagccgttacagtatttagagtacacggatattaacagcccataattcctaagtaatgcaactgaataattttatttatatgcttaaattatatacTTCC-AGCTTGTTCACGCTTTGA--TGAAT--AATG--CTT-CAATA--AAGTAAACTCAAAATATGGG-------------T-TA--TAAATG-A-GGTAAATTGGTT-A-GTTTCCTA--------ACACC-G-T---TAC-GAT-C-TATGTTTTAT-GTT--A-ATG-TAAT-TGAT-------------------CCGGAATC----AGCGGTAAC-CC-TAACATAT-GAGAGCCTAAAT-GAGACTCTAT---AAATA-ATTCCTAAAATT-ACTGA-AGAGAG-CAAACACA-GATATCACAATAAGAACACCA-C-TAG--AGAGAGTGAATAG---TA-GAATG-AGG-TA--GTCA-----ACTAT-CA-GTAG-GATATATAGC-ATT--AAA-A--T----ATATTAA-TATTTT-TTTCCATTCGTTT-C-TC-TAAAGT------------------TC--TCTAA-AGTACTCTGTTT-AGATG-TAGGACta
gi|7 : atgttgATGTTTTTTCAATA--AAGTAAAT----AATATGG--------------T-TA--TAAATGCA-TGTAAATTGGTT-A-GTTT--CA-------CACACTTG-TA-A---------------TTTAT-GTTAAA-ATG-TAAT-TGATA------TTTGAATCGGGATCGGGATCA---AGCCGTATT-CCGTAGC-T-T-GA-AGC---AAT-AC------AT-TGTAATG-ATTCCTAAAA-TAACTGA-A---AA-C-AACA-A-AATAT------------ATTT-C-TAA-TATATATTTAATAGGTTTA-AATTA-CAGTTACAATCA-TT-CATTAATCA-GCCG-T-TAAATTGC-CTT--AAA-A--T----A---TAA-TA--TT-TTT-CA-GTG-TA-C-TC-TAAAGTAC-TCTAACGTA-------C--TCTAA-AGTACTCTGTTT-A---G-TAGGAC
gi|8 : aaatGGGTC-CT------ACT---AAA-C--A-GAGTACTTTAG-AGAAGCACTGGAAAAA-------TAACCATAATTCTAAGC-TAATA-----CAACA---------GA-T-----------TATTTTTA-TTCATATGCTTAAA--AACATTATTATAAAA-TAA-TTTTGCAATAGTTTTC-TCAATTAATTTGTTTTTA-GTGATGTTCTA-AAC-ATAAAACG-CATTCT-----------AT---TTAATAAAGGTTTTTG--CCATCCGAATCCCG---ATTATTATT-----ATTTGGTGAGAATTTAGCA----T----ACTACAACCA--GTGATATC-TTTAATCATTC-c
gi|9 : tTG-TGAT-TAATA------TTT-------GATCAGGATTGGTCAGCGGTTTA-CTG-AAA-T-T-GA-AAC---TAT-GA------ATGTGAAATA-ATTC-TAAGA-T-ATTGATA---AA-CAAA-----AATAT------------ATTT-C-ACG-TATATATTTTATAGG-TTATAGCTATCTA-TATGA-CA-TT-CATGAA-TAGGCA--T-TACATTGCTATT--AGA-A--TTTGAA---AAA-AA--TT-T---CA-ACA-TA-CTTC-TAAAGTAC-TCT
gi|9 : gtgaagtGGTC-CT------ACT---AA--C--A-GAGTACTTTAGAAGTA-TGTTgttagtaggacc
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 2222222222 11111 4444444444444444444444444444444 2222222222222222 111 4444444444444444444444 11 111 22222 1111 1111 111 11 11 11 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 11 11 1111 55555555555555555555 22222222 333333333333333 1 33333333333333333333 1111 1 111 111111 222222222222 22222222222
lowQualScore : 4 222222 777 4 66 4 0 4 77 8888888888 99 00000 4 8888888888888888888888888888888 9 777 8 9999999999999999 0 6 6 8 8 0 8 11 222 5 0 0 5 2222222222222222222222 11 111 0 5 00000 7777 7777 333 11 11 0 2 8 66 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 8 11 6 88 3 1 6 99 2222 11111111111111111111 2 6 1 666 7 88888888 22 444444444444444 8 0 8 0 8 6 6 33333333333333333333 1 3333 77 3 6 6 111 5 666666 5 5 5 5 5 5 888 4 4 444444444444 4 4 88 3 3 2 55 3 2 3 3 2 2 0 2 2 3 2 33 2 33 555 3 44 6 3 6 33 3 2 3 1 88888888888 3 3 555 3
lowQualScore : . ...... ... . .. . . . .. .......... .. ..... . ............................... . ... . ................ . . . . . . . .. ... . . . . ...................... .. ... . . ..... .... .... ... .. .. . . . .. ......................................................................................................................................................... . . .. . .. . . . .. .... .................... . . . ... . ........ .. ............... . . . . . . . .................... . .... .. . . . ... . ...... . . . . . . ... . . ............ . . .. . . . .. . . . . . . . . . . . .. . .. ... . .. . . . .. . . . . ........... . . ... .
lowQualScore : 4 888888 888 4 11 4 7 0 99 5555555555 55 00000 0 6666666666666666666666666666666 3 888 9 9999999999999999 1 7 7 0 0 8 0 88 000 0 8 8 0 8888888888888888888888 00 888 8 6 00000 0000 0000 888 00 00 8 8 0 00 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 0 00 4 66 5 0 7 22 1111 33333333333333333333 5 7 0 888 2 33333333 22 222222222222222 0 8 0 6 0 7 7 77777777777777777777 0 3333 77 3 7 7 777 7 444444 7 7 0 0 0 0 888 4 4 555555555555 0 0 99 6 3 3 11 3 2 1 1 9 9 8 9 9 8 9 99 9 99 000 1 22 2 1 2 88 1 3 1 8 33333333333 3 3 888 3
consensus : GGGGTC-CT------ACT---AAA-C--A-GAGTACTTTAGAGTA-CGTTAGAG----------TA--CA-----CTGGAA-TAAT---------------------A--ACA----ATAA---TTTCTAAGTA-ATGC-------AAC----TGATAAAA-TAA-TTTTGCAATAGTTGTC-TCAATTA-TTTGTTTTTA-GCGATGTTCTATAACCATAAAACGGCATTCT-----------AT---T----AAAGGTTTTTG--CCATCCCGATCCCGATTATTATTATT-----ATTTGGTGAGAATTTAGCA----TA----CTAC-ACCAG--TG--ATCATTTCATCATTC-GGGTTNGTCGGAAAAACTATCAAGNTCCACNATNGAGAGANGTATCGCGGTTAA-TAACNAGNTTAAAATAGCTCCCGCGCAAT-GC-GTAAAAT----TGC-GTGAAA---ACG-----ACATTGA----CAATT-------A---TAAATA-----AG-------TT-CG-TTTCC-AGCTTGTTCACGCTTTGA--CGAATA-AATGTTCTT-CAATA--AAGTAAAT----AATATGGNTT----T--------TA--TAAATGCA-TGTAAATTGGTT-A-GTTTCACA-------CACACCTG-TA-ATAC-GCTAT-TAT-TTTTAT-GTTAAA-ATG-TAAT-TGA------TATTT-------GATCGGGATCA---AGCGGTAAN-CCGTAGC-T-TGA-AGC---AA-TAA------AT-TGAAATA-ATTCCTAAAA-T-ACTG-A-A---AACAAACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGG-TTA-AACTA-CAG-TACGATCA-TT-CATTAA-CA-GCAG-T-TAAATNGC-ATT--AAA-A--TA---TAA-TA--TT-TTTCCA-GCG-TA-CT-CTAAAGTAC-TCTAACGTA-CC--------TCTAA-AGTACTCTGTTT-A---G-TAGGAC
Reference ( family-8214 ) : GGGGTC-CT------ACT---AAA-C--A-GAGTACTTTAGAGTA-CGTTAGAG----------TA--CA-----CTGGAA-TAAT---------------------A--ACN----ATAA---TTTCTAAGTA-ATGC-------AAC----TGATAAAA-TAA-TTTTGCAATAGTTGTC-TCAATTA-TTTGTTTTTA-GCGATGTTCTATAACCATAAAACGGCATTCT-----------AT---T----AAAGGTTTTTG--CCATCCCGATCCCGATTATTATTATT-----ATTTGGTGAGAATTTAGCA----TA----CTAC-ACCAG--TG--ATCATTTCATCATTC-GGGTTNGTCGGAAAAACTATCAAGNTCCACNATNGAGAGANGTATCGCGGTTAA-TAACNAGNTTAAAATAGCTCCCGCGCAAT-GC-GTAAAAT----TGC-GTGAAA---ACG-----ACATTGA----CAATT-------A---TAAATA-----AG-------TT-CG-TTTCC-AGCTTGTTCACGCTTTGA--CGAATA-AATGTTCTT-CAATA--AAGTAAAT----AATATGGNTT----T--------TA--TAAATGCA-TGTAAATTGGTT-A-GTTTCACA-------CACACCTG-TA-ATAC-GCTAT-TAT-TTTTAT-GTTAAA-ATG-TAAT-TGA------TATTT-------GATCGGGATCA---AGCGGTAAN-CCGTAGC-T-TGA-AGC---AA-TAA------AT-TGAAATA-ATTCCTAAAA-T-ACTG-A-A---AACAAACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGG-TTA-AACTA-CAG-TACGATCA-TT-CATTAA-CA-GCAG-T-TAAATNGC-ATT--AAA-A--TA---TAA-TA--TT-TTTCCA-GCG-TA-CT-CTAAAGTAC-TCTAACGTA-TC--------TCTAA-AGTACTCTGTTT-A---G-TAGGAC
gi|1 : GGGGTC-CT------ACT---AAA-C--A-GAGTACTTTAGAGTA-CGTTAGAG----------TA--CA-----CTGGAA-TAAT---------------------A--ACC----ATAAAATTTTCTAAGTA-ATGC-------AAC----TGATAAAAATAA-TTTTGCAATAGTTGTC-TCAATCA-TTTGTTTTTA-GCGGTGTTCTATAACCATAAAACGGCATTCT-----------AT---T----AAAGGTTTTTG--CCATCCCGATCAAGATTATTATTATTTGATAATTTGGTGAGAATTTAGCA----TA----CTAC-ACCAG--TG--ATCATTTCATCATTCTGGGCTC-TCGGAAAAACT-TCAAAATTCACAATCGA---ATGTATTGCAGTTAGTTAACTAGCTTAAAATA-CTC-----------C-GT-AAAT----TGC-AT-AAA---ACA-----ACATTGA----CTATT-------A---TAAA--------------------G-TTTTC-AGCTTGTTCACGCTTTGA--CGAATATAATGTTCTT-CAATA--AAGTAAAT----AATATGGTTTACAATGTACAATGTA--TAAATGCA-TGTAAATTAGTT-A-GTTTCACA-------CACACCTG-TA-ATAC-GCTAT-TAT-TTTTAT-GTT-AA-ATG-TAAT-TGATACCGGTATTT-------GATCGGGATCA---AGCGGTAAA-CCGTAGC-T-TGA-AGC---AA-TAA------AT-TGAAATA-ATTCCTAAAA-T-ACTG-A-A---AACAAACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGG-TTA-AACTA-CAG-TACGATCA-TT-CATTAA-CA-GCAG-T-TAAATGGC-ATT--GAA-A--TA---TAA-TA--TT-TTTCCA-GCG-TA-CT-CTAAAGTAT-TCTAACGTA-CCGTACTCTATTTAA-AGTACTCTGTTT-A---G-TAGGAC
gi|10 : A-TAA------AC-TGAAATA-ATTCCTTAAA-T-GATG-A-A---AACAAACA-A-ATTAC------------A-TTTCACAA--ATATATCTGTTAGG-TTA-AGTTA--AG-TACGGGCA-TT-AATGAA-CT-GCAG-T-TAGAGTGC-AAT--GAATT--TA---TCA-TT--TT-CCCCCA-ACG-TA-CT-CTAAAGTAC-TCTAATGTA-C-------------A-AGTACTTTGTTT-A---G-TAAGAC
gi|11 : gA-T-ACTG-A-A---AACAAACA-A-AATAT------------A-TTTC-TAA-AATATATTTAATAGG-TTA-AATTA-CAG-TACGATCA-TG-CATTAA-CA-CCAG-T-TAAATAGC-ATT--AAA-A--TA---TAA-TA--TT-TTTCCA-TCG-TT-CT-CTAAAGT-------------TC--------TCTAA-AGTACTCTGTTT-A---G-TAGGAc
gi|12 : ACA-ATAATGTT-----------A-TTTA--AG-TATATATAAAATAGA-T-A-AA--A-TAA-TACATTGA-TTGTATT-------TAG-C-TAAAT----AT----AA-A--TA---TGA-TA--TTATTTCCA-GTG-TATCT-CTAAAGTACCTCTAAC-TA-AC--------TCTAATATTACTCTGTTT-A---GTTAGGAC
gi|13 : gTAT------------A-TTTC-TGA-TATATATTTAATAGG-TTA-AAATA-CAG-TACAATCA-TT-CATTAA-CA-GCAG-T-TAAATGGC-ATT--GAA-A--TA---TAA-TA---T-TTTCCA-GCA-TT-CT-CTAAAGTAT-TATAACGTA--C--------TCTAA-AGTACTCTGTTT-A---G-TAGGACc
gi|14 : ATATATTTAATAGG-CTA-AACTA-CAG-TATGATCA-TT-CATTAA-CA-GCAG-T-TAAATAGC-ATT--AAG-A--TA---TAA-TA--TTCTTTCCA-GC-------------GTAC-TCTAACGTA--C--------TCTAA-AGTACTCTGTTT-A---G-TAGGACc
gi|15 : agGTC-CT------AC----AAA-CTCA-GAGTACTTTAGAGT--TG-TAGAGA---------TA---A-----CTGGAA-AAAT------------------------ATA----ATAA---TTCAAGAGTA-ATTT-------AAC----TAATc
gi|16 : TA-AACTA--AG----GA-CA-CT-TACAAA-CA-ACGGCT-TAATTTAC--TT--GAA-T--TA---TGA-TA--TT-TTACCC-ACG-TA-CT-CTAAAGT-C-TGTAACGTA--C--------TGTAG-CTTACTCTGTTC-A---G-AAGGACtttttatatggtaacacttaattaaactttgtta
gi|17 : cTTA-TT-CATTAA-CA-GC-G-T-TAAATGGC-CTT--AAA-ACATA---TAA-TA--TT-TTTTCA-GGGTTA-CT-CT-AAGTAC-TCTAACGTACTC--------TCC-A-AGT-CTCTGTTT-A---G-TAGGAC
gi|18 : GGGTC-CTGCGTATACT---AAA-C--A-GAATAC---AGAGTA-CTTTAGAG----------TG--CG-----CTAAAA-AAAT-------------------------TC----AT-A---TGTCAAAGTA-ATCC-------AAC----TGATc
gi|19 : accGGGGTCACT------ACT---AAAAC--A-GAGTACTTTAGAGTA-C----------------------A-----CTGGAATTAAT---------------------A--ACT----ATAA----TTCTTAGTA-ATGtatttatattattt
gi|2 : GGGTC-CT------ACT---AAA-C--A-GAGTACTT-AGAGTA-CGCTAGAG----------TA--CA-----CTGGAA-TAATAACCATAATTCTAAGTAATGCA--ACAG---ATTA---TTTTTATTTATATGCTCAAATAAACATTATTATAAAA-TAA-TTTTGCAATAGATGTC-TCAATTA-TTTGTTTTTA-GCGATGTTC--TAACCATAAAACGGCATTCTATTACAATGTAAT---T----AAAGGTTTTTG--CCAT-CCGATCCCG---ATTATTATT-----ATTTGGTGAGAATTTAGCATACGTA----CTAC-AACAA--TG--ATCATTTCANNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN-NNNNNNN----NNN-NNNNNN---NNN-----NNNNNNATTGACAGTT-------A---TAGATAAATACAG-------TT-TG-TTTCC-AGCTTGTTCACGCTTTGA--CAAAT--AATGTTCTT-CAATA--AAATAAAT----AATATGGGTT----A--------TAATTAAATGCA-TGTAAATTGGTT-A-GTTTCACA-------Cgcacagtattattttcatt
gi|20 : acaGGGTC-CT------ACTGCAAAA-C--ATGAGTACTTTAGAGTA-CGTTAGAGTATTTAGAGTTA--CA-----CTAGGA-TAAT---------------------A--ACA----AT-A---TTTATAA
gi|21 : cTTAA-TA-GTAT-T-TAA-TAGT-ATTCAAAA-A--TA---TGA-AA--TT-TTACCA-GTG-TA-CG-CTAACGTAC-TCT
gi|21 : aatGGTA-CT------ACT---AAA-C--A-GAG----------TA-CGTTAGCG----------TA--CA-----CTGGTA-AAAT---------------------gtttagtagtacc
gi|3 : aatttaatagtatttaatagtattcaaaaatatgaaGGGTC-CT------ACT---AAA-C--A-GAGTACTTTAGAGTA-CTTTAGAG----------TAA-CA-----CTGGA--TAAT---------------------A--ACG----ATGA---TT-CTAAGTA-ATAC-------AAC----AGA---------------------TTATC-T---TTA-TTT-----------ATATACT-TAA---TAAA----CATT-------------AT---T--------GTTTTTGGGCCATCCGGATCCCGATTA---TTATT-----ATTTGGTGAGAATTTAGCA----TA----CTAC-A-CAG--TG--ATCATTTCA-CATTC-GGGTTAGTCGGAAAAACT------------------------TATTGCAGTTAA--AAC----TTAAAATA-CTCC----------C-GTAAAAT----TGCTGTGAAA---ACA-----GCACAAA----CAATTGAAATTAA---TAAATA-----AATATGAGTTT-TGTTTTCC-AGCTTGTTCA-GGTTTGG--C-AATA-ATTATTCTT-CAAAT--AAGTAAAT----AATA
gi|3 : AAAC----AAT-TGAAAT----T--------AA--TAAATAAA-TATGAGTT--TT-G-TTTTC-CAGCTTGTTCAGGTTTGGCA-ATA-----AT-TAT-TCTT-----CAAATAAG-TAAA-TAA------TA-----------ATCGG-ATCA---AGCGGTAAAATCGTAGC-T--GA-AGC---AA-TAA------AT-TGAAATA-ATTCCTATA--T-ACTG-A-A---AACAAACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGG-TTA-AACTA-CAT-TACGATCATTT-CATTAA--A-GC-G-T-TAAA-GGC-ATT--AAA-A--TA---TAatcggatcaagcggtaaaatcgtagctgaagcaataaattgaaataattcctatatactgaaaacaaacaaaatatatttctaatatatatttaataggttaaactacattacgatcatttcattaaagcgttaaaggcattaaaatatacaacctattc
gi|4 : gggtcctactaaacagagtactttagagtactttagagtaacactggataataacgatgattctaagtaatacaacagattatctttatttatatacttaataaacattattgtttttgggccatccggatcccgattattattatttggtgagaatttagcatactacacagtgatcatttcacattcgggttagtcggaaaaacttattgcagttaaaacttaaaatactcccgtaaaattgctgtgaaaacagcacT-GCTGTGAAATAACATGC-AT-AAA---ACG-----A-ATTGA----CAATT-------AAAATAAATGT----AG-------TTTCG-TTTCCCAGCTTGTTCACGCTTTGAAGCAAATA-A-TATT-TT-AAATATAAAGTAAAT----AATATTGCTT----T---------A--TAA-TGCAATGTAAATTGGTTTATGTTTCACA--------ACACATG-TAGATACTGCTATGTAT-TTTTATTGTTAAA-ATGGTAATGTTA------TATTT-------G-TCGGGATCA---AGCGGTAAT-TCGTAGCTT-TGA-AGC---AATTAA------AT-TGAAATAGATTCCTAAAA-T-ACTGAA-A---AATAAACA-A-AATAT------------ATTTTC-TAAGCATATA-TTAATAGG-CTA-AACTA-CAG--ACG--C--TT-CATT-A-CA-GCAG-T-T-AATGGA-TTT--AAA-A--T----TAACTA--TT-ATTCCC-ACG-TA-CTCCTAATGTAC-TCTA-------------------AA-AGTACTCTGTTTAA---G-TAGGACcaacctattc
gi|5 : aaaatTTACAGTA-T-TTAGAG----------TA--CA-----C--GGA-TATT---------------------A--ACAGCCCATAA---TTCCTAAGTA-ATGC-------AAC----TG----AA-TAA-TTTT
gi|5 : gagccg-ATGC-------A-C------ATAACA-CAAATTGTGCAATATTTGTCCTCAATTA-TT-GTTTTTAAGCGATG--CTAGAACCA-AAAACGGCATTCT-----------ATAAGT----AAAAAGTTTTG--CCATCCCGCGTCCGATTATT--TATT-----ATTTGGTGAGAATTTGGCA----TAGCGACCAC--CCAGGGTG--ATCATATATTCATTC-GGGTT-GTCGGAAAACCTATCAAGTTCTATCATAGAGAGAGAGATCACGATT-A-TAACGAGGAGAGAATAGCT-CCGCGCAATAGC-GTAAATTCCA-TGG-GTAAAAAATACGCATAAACATTGA----Catttatatgcttaaattatatacatgcacataacacaaattgtgcaatatttgtcctcaattattgtttttaagcgatgctagaaccaaaaacggcattctataagtaaaaagttttgccatcccgcgtccgattatttattatttggtgagaatttggcatagcgaccacccagggtgatcatatattcattcgggttgtcggaaaacctatcaagttctatcatagagagagagatcacgattataacgaggagagaatagctccgcgcaatagcgtaaattccatgggtaaaaaatacgcataaacattgacta
gi|6 : gagccgttacagtatttagagtacacggatattaacagcccataattcctaagtaatgcaactgaataattttatttatatgcttaaattatatacTTCC-AGCTTGTTCACGCTTTGA--TGAAT--AATG--CTT-CAATA--AAGTAAACTCAAAATATGGG------T--------TA--TAAATG-A-GGTAAATTGGTT-A-GTTTCCTA--------ACACC-G-T---TAC-GAT-C-TATGTTTTAT-GTT--A-ATG-TAAT-TGA------T-------------CCGGAATC----AGCGGTAAC-CC-TAACATATGAGAGCCTAAA-TGAGACTCTAT---AAATA-ATTCCTAAAATT-ACTG-A-AGAGAGCAAACACA-GATATCACAATAAGAACA-CCAC-TAG--AGAGAGTGAATAG---TA-GAATG-AGG-TA--GTCA-----ACTAT-CA-GTAG-GATATATAGC-ATT--AAA-A--TATATTAA-TATTTT-TTTCCATTCGTTT-CT-CTAAAGT-------------TC--------TCTAA-AGTACTCTGTTT-AGATG-TAGGACta
gi|7 : atgttgATGTTTTTTCAATA--AAGTAAAT----AATATGG-------T--------TA--TAAATGCA-TGTAAATTGGTT-A-GTTT--CA-------CACACTTG-TA-A---------------TTTAT-GTTAAA-ATG-TAAT-TGA------TATTTGAATCGGGATCGGGATCA---AGCCGTATT-CCGTAGC-T-TGA-AGC---AA-TAC------AT-TGTAATG-ATTCCTAAAA-TAACTG-A-A---AAC-AACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGGTTTA-AATTA-CAGTTACAATCA-TT-CATTAATCA-GCCG-T-TAAATTGC-CTT--AAA-A--TA---TAA-TA--TT-TTT-CA-GTG-TA-CT-CTAAAGTAC-TCTAACGTA--C--------TCTAA-AGTACTCTGTTT-A---G-TAGGAC
gi|8 : aaatGGGTC-CT------ACT---AAA-C--A-GAGTACTTTAGAGAAGCACTGGAAAAA-------TAACCATAATTCTAAGC-TAAT---------------------ACAACAG---ATTA---TTTTTATTCATATGCTTAAA--AACATTATTATAAAA-TAA-TTTTGCAATAGTTTTC-TCAATTAATTTGTTTTTA-GTGATGTTCTA-AAC-ATAAAACG-CATTCT-----------AT---TTAATAAAGGTTTTTG--CCATCCGAATCCCG---ATTATTATT-----ATTTGGTGAGAATTTAGCA----TA----CTACAACCAG--TGATATC-TTTAATCATTC-c
gi|9 : tTG-TGAT-TAA------TATTT-------GATCAGGATTGGTCAGCGGTTTA-CTG-AAA-T-TGA-AAC---TA-TGA------ATGTGAAATA-ATTC-TAAGA-T-ATTG-ATA---AACAAA-----AATAT------------A-TTTC-ACG-TATATATTTTATAGG-TTATAGCTATCTA-TATGA-CA-TT-CATGAA-TAGGCA--T-TACATTGCTATT--AGA-A--TT---TGA---------------------------AAAAAAT-TTCAACATA-CT--------TCTAA-AGTACTCTG-TT-A---G-TAGGAC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 11111111111 2222222222 77777777777777777777777777777777777777777777777777 2222222222222222 111 4444444444444444444444 11 111 22222 1111 1111 111 11 11 11 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 11 11 1111 55555555555555555555 22222222 333333333333333 444444444444444444 1111 1 111 111111 222222222222 22222222222 11111111111
lowQualScore : 4 111111 4 777 4 55 4 3 77777777777 99 3333333333 3 3 44 0 99999999999999999999999999999999999999999999999999 777 55 8 9999999999999999 0 6 6 8 8 0 8 11 222 5 0 0 5 2222222222222222222222 11 111 0 5 00000 7777 7777 333 11 11 0 2 8 66 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 8 11 6 88 3 1 6 99 2222 11111111111111111111 2 6 1 666 7 88888888 22 444444444444444 8 0 8 0 88 6 6 333333333333333333 1 3333 77 3 6 6 111 5 666666 5 5 5 5 5 5 888 4 4 444444444444 4 4 88 3 3 2 55 3 2 3 3 2 2 0 2 2 3 2 33 2 33 555 3 44 6 3 6 0 33 4 44444444444 55555555555 3 555 3
lowQualScore : . ...... . ... . .. . . ........... .. .......... . . .. . .................................................. ... .. . ................ . . . . . . . .. ... . . . . ...................... .. ... . . ..... .... .... ... .. .. . . . .. ......................................................................................................................................................... . . .. . .. . . . .. .... .................... . . . ... . ........ .. ............... . . . . .. . . .................. . .... .. . . . ... . ...... . . . . . . ... . . ............ . . .. . . . .. . . . . . . . . . . . .. . .. ... . .. . . . . .. . ........... ........... . ... .
lowQualScore : 0 555555 0 000 0 55 0 6 33333333333 44 2222222222 6 6 11 8 88888888888888888888888888888888888888888888888888 000 55 0 9999999999999999 1 7 7 0 0 8 0 88 000 0 8 8 0 8888888888888888888888 00 888 8 6 00000 0000 0000 888 00 00 8 8 0 00 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 0 00 4 66 5 0 7 22 1111 33333333333333333333 5 7 0 888 2 33333333 22 222222222222222 0 8 0 8 88 7 7 555555555555555555 0 3333 77 3 7 7 777 7 444444 7 7 0 0 0 0 888 4 4 555555555555 0 0 99 6 3 3 11 3 2 1 1 9 9 8 9 9 8 9 99 9 99 000 1 22 2 1 2 7 44 2 44444444444 88888888888 3 888 3
consensus : GGGGTC-CT------A-CT---AAA-C--A-GAGTACT-TTAGA-----------GTACGTTAGAG----------TA-CACTGG-AA-TAATAA------------------C--------------A----ATA---------A---TTT--CTAAGTA-ATGC-------AAC----TGATAAAA-TAA-TTTTGCAATAGTTGTC-TCAATTA-TTTGTTTTTA-GCGATGTTCTATAACCATAAAACGGCATTCT-----------AT---T----AAAGGTTTTTG--CCATCCCGATCCCGATTATTATTATT-----ATTTGGTGAGAATTTAGCA----TA----CTAC-ACCAG--TG--ATCATTTCATCATTC-GGGTTNGTCGGAAAAACTATCAAGNTCCACNATNGAGAGANGTATCGCGGTTAAT-AACNAGNTTAAAATAGCTCCCGCGCAAT-GC-GTAAAAT----TGC-GTGAAA---ACG-----ACATTGA----CAATT-------A---TAAATA-----AG-------TT-CG-TTTCC-AGCTTGTTCACGCTTTGA--CGAATA-AATGTTCTT-CAATA--AAGTAAAT----AATATGGNTT-----------T-TA--TAAATGCA-TGTAAATTGGTT-A-GTTTCACA-------CACACCTG-TA-ATAC-GCTAT-TAT-TTTTAT-GTTAAA-ATG-TAAT-TGATA------TTT-------GATCGGGATCA---AGCGGTAAN-CCGTAGC-T-TGA-AGC---AA-TAA------AT-TGAAATA-ATTCCTAAAA-T-ACTG-A-A---AACAAACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGG-TTA-AACTA-CAG-TACGATCA-TT-CATTAA-CA-GCAG-T-TAAATNGC-ATT--AAA-A--TA---TAA-TA--TT-TTTCCA-GCG-TACT-CTAAAGTACTCTAACGTAC-C--------TCTAA-----------AGTACTCTGTTT-A---G-TAGGAC
Reference ( family-8214 ) : GGGGTC-CT------A-CT---AAA-C--A-GAGTACT-TTAGA-----------GTACGTTAGAG----------TA-CACTGG-AA-TAATAA------------------C--------------A----ATA---------A---TTT--CTAAGTA-ATGC-------AAC----TGATAAAA-TAA-TTTTGCAATAGTTGTC-TCAATTA-TTTGTTTTTA-GCGATGTTCTATAACCATAAAACGGCATTCT-----------AT---T----AAAGGTTTTTG--CCATCCCGATCCCGATTATTATTATT-----ATTTGGTGAGAATTTAGCA----TA----CTAC-ACCAG--TG--ATCATTTCATCATTC-GGGTTNGTCGGAAAAACTATCAAGNTCCACNATNGAGAGANGTATCGCGGTTAAT-AACNAGNTTAAAATAGCTCCCGCGCAAT-GC-GTAAAAT----TGC-GTGAAA---ACG-----ACATTGA----CAATT-------A---TAAATA-----AG-------TT-CG-TTTCC-AGCTTGTTCACGCTTTGA--CGAATA-AATGTTCTT-CAATA--AAGTAAAT----AATATGGNTT-----------T-TA--TAAATGCA-TGTAAATTGGTT-A-GTTTCACA-------CACACCTG-TA-ATAC-GCTAT-TAT-TTTTAT-GTTAAA-ATG-TAAT-TGATA------TTT-------GATCGGGATCA---AGCGGTAAN-CCGTAGC-T-TGA-AGC---AA-TAA------AT-TGAAATA-ATTCCTAAAA-T-ACTG-A-A---AACAAACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGG-TTA-AACTA-CAG-TACGATCA-TT-CATTAA-CA-GCAG-T-TAAATNGC-ATT--AAA-A--TA---TAA-TA--TT-TTTCCA-GCG-TACT-CTAAAGTACTCTAACGTAC-C--------TCTAA-----------AGTACTCTGTTT-A---G-TAGGAC
gi|1 : GGGGTC-CT------A-CT---AAA-C--A-GAGTACT-TTAGA-----------GTACGTTAGAG----------TA-CACTGG-AA-TAATAA------------------C--------------C----ATA---------AAATTTT--CTAAGTA-ATGC-------AAC----TGATAAAAATAA-TTTTGCAATAGTTGTC-TCAATCA-TTTGTTTTTA-GCGGTGTTCTATAACCATAAAACGGCATTCT-----------AT---T----AAAGGTTTTTG--CCATCCCGATCAAGATTATTATTATTTGATAATTTGGTGAGAATTTAGCA----TA----CTAC-ACCAG--TG--ATCATTTCATCATTCTGGGCTC-TCGGAAAAACT-TCAAAATTCACAATCGA---ATGTATTGCAGTTAGTTAACTAGCTTAAAATA-CTCC------------GTAAA-T----TGC-AT-AAA---ACA-----ACATTGA----CTATT-------A---TAAA--------------------G-TTTTC-AGCTTGTTCACGCTTTGA--CGAATATAATGTTCTT-CAATA--AAGTAAAT----AATATGGTTTACAATGTACAATGTA--TAAATGCA-TGTAAATTAGTT-A-GTTTCACA-------CACACCTG-TA-ATAC-GCTAT-TAT-TTTTAT-GTTAAA--TG-TAAT-TGATACCGGTATTT-------GATCGGGATCA---AGCGGTAAA-CCGTAGC-T-TGA-AGC---AA-TAA------AT-TGAAATA-ATTCCTAAAA-T-ACTG-A-A---AACAAACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGG-TTA-AACTA-CAG-TACGATCA-TT-CATTAA-CA-GCAG-T-TAAATGGC-ATT--GAA-A--TA---TAA-TA--TT-TTTCCA-GCG-TACT-CTAAAGTATTCTAACGTAC-CGTACTCTATTTAA-----------AGTACTCTGTTT-A---G-TAGGAC
gi|10 : A-TAA------AC-TGAAATA-ATTCCTTAAA-T-GATG-A-A---AACAAACA-A-ATTAC------------A-TTTCACAA--ATATATCTGTTAGG-TTA-AGTTA--AG-TACGGGCA-TT-AATGAA-CT-GCAG-T-TAGAGTGC-AAT--GAATT--TA---TCA-TT--TT-CCCCCA-ACG-TACT-CTAAAGTACTCTAATGTAC--------------A-----------AGTACTTTGTTT-A---G-TAAGAC
gi|11 : gA-T-ACTG-A-A---AACAAACA-A-AATAT------------A-TTTC-TAA-AATATATTTAATAGG-TTA-AATTA-CAG-TACGATCA-TG-CATTAA-CA-CCAG-T-TAAATAGC-ATT--AAA-A--TA---TAA-TA--TT-TTTCCA-TCG-TTCT-CTAAAGT-----------T-C--------TCTAA-----------AGTACTCTGTTT-A---G-TAGGAc
gi|12 : GGTC-CT------AACT---AAA-C--A-GAGTAATATTAGAGTTAGTTAGAGGTACTTTAGAGA---------TA-CACTGGAAA-TAATAT------------------C-------------------ATATTTAT----A---TTTAGCTAAATA-
gi|12 : ACA-ATAATGTT-----------A-TTTA--AG-TATATATAAAATAGA-T-A-AA--A-TAA-TACATTGA-TTGTATT-------TAG-C-TAAAT----AT----AA-A--TA---TGA-TA--TTATTTCCA-GTG-TAT----------CTCTAAAGTAC-C--------TCTAACTAACTCTAATATTACTCTGTTT-A---GTTAGGACcaatcaatgtattattttatctattttatatatacttaaataacattattgtc
gi|13 : gTAT------------A-TTTC-TGA-TATATATTTAATAGG-TTA-AAATA-CAG-TACAATCA-TT-CATTAA-CA-GCAG-T-TAAATGGC-ATT--GAA-A--TA---TAA-TA---T-TTTCCA-GCA-TTCT-CTAAAGTATTATAACGTA--C--------TCTAA-----------AGTACTCTGTTT-A---G-TAGGACc
gi|14 : ATATATTTAATAGG-CTA-AACTA-CAG-TATGATCA-TT-CATTAA-CA-GCAG-T-TAAATAGC-ATT--AAG-A--TA---TAA-TA--TTCTTTCCA-GC------------GTACTCTAACGTA--C--------TCTAA-----------AGTACTCTGTTT-A---G-TAGGACc
gi|15 : agGTC-CT------A-C----AAA-CTCA-GAGTACT-TTAGA-----------GT-TG-TAGAGA---------TA--ACTGG-AA-AAAT-A------------------T--------------A----ATA---------A---TTC--AAGAGTA-ATTT-------AAC----TAATc
gi|16 : TA-AACTA--AG----GA-CA-CT-TACAAA-CA-ACGGCT-TAATTTAC--TT--GAA-T--TA---TGA-TA--TT-TTACCC-ACG-TACT-CTAAAGT-CTGTAACGTA--C--------TGTAG-----------CTTACTCTGTTC-A---G-AAGGACtttttatatggtaacacttaattaaactttgtta
gi|17 : cTTA-TT-CATTAA-CA-GC-G-T-TAAATGGC-CTT--AAA-ACATA---TAA-TA--TT-TTTTCA-GGGTTACT-CT-AAGTACTCTAACGTACTC--------TCC-A-----------AGT-CTCTGTTT-A---G-TAGGAC
gi|18 : GGGTC-CTGCGTATA-CT---AAA-C--A-GAATAC----AGA-----------GTACTTTAGAG----------TG-CGCTAA-AA-AAAT--------------------T--------------C----AT----------A---TGT--CAAAGTA-ATCC-------AAC----TGATc
gi|19 : accGGGGTCACT------A-CT---AAAAC--A-GAGTACT-TTAGA-----------GTAC---------------------ACTGG-AATTAATAA------------------C--------------T----ATA---------A----TT--CTTAGTA-ATGtatttatattattt
gi|2 : GGGTC-CT------A-CT---AAA-C--A-GAGTACT-T-AGA-----------GTACGCTAGAG----------TA-CACTGG-AA-TAATAACCATAATTCTAAGTAATGC--------------A----ACAGATT-----A---TTT--TTATTTATATGCTCAAATAAACATTATTATAAAA-TAA-TTTTGCAATAGATGTC-TCAATTA-TTTGTTTTTA-GCGATGTTC--TAACCATAAAACGGCATTCTATTACAATGTAAT---T----AAAGGTTTTTG--CCAT-CCGATCCCG---ATTATTATT-----ATTTGGTGAGAATTTAGCATACGTA----CTAC-AACAA--TG--ATCATTTCANNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN-NNNNNNN----NNN-NNNNNN---NNN-----NNNNNNATTGACAGTT-------A---TAGATAAATACAG-------TT-TG-TTTCC-AGCTTGTTCACGCTTTGA--CAAAT--AATGTTCTT-CAATA--AAATAAAT----AATATGGGTT-----------A-TAATTAAATGCA-TGTAAATTGGTT-A-GTTTCACA-------Cgcacagtattattttcatt
gi|20 : acaGGGTC-CT------A-CTGCAAAA-C--ATGAGTACT-TTAGA-----------GTACGTTAGAGTATTTAGAGTTA-CACTAG-GA-TAATAA------------------C--------------A----AT----------A---TTT--ATAA
gi|21 : cTTAA-TA-GTAT-T-TAA-TAGT-ATTCAAAA-A--TA---TGA-AA--TT-TTACCA-GTG-TACG-CTAACGTACTCT
gi|21 : aatGGTA-CT------A-CT---AAA-C--A-GAG----------------------TACGTTAGCG----------TA-CACTGG-TA-AAATgtttagtagtacc
gi|3 : aatttaatagtatttaatagtattcaaaaatatgaaGGGTC-CT------A-CT---AAA-C--A-GAGTACT-TTAGA-----------GTACTTTAGAG----------TAACACTGG-A--TAATAA------------------C--------------G----ATG---------A---TT---CTAAGTA-ATAC-------AAC----AGA---------------------TTATC-T---TTA-TTT-----------ATATACT-TAA---TAAA----CATT-------------AT---T--------GTTTTTGGGCCATCCGGATCCCGATTA---TTATT-----ATTTGGTGAGAATTTAGCA----TA----CTAC-A-CAG--TG--ATCATTTCA-CATTC-GGGTTAGTCGGAAAAACT------------------------TATTGCAGTTAA--AAC----TTAAAATA-CTCC----------C-GTAAAAT----TGCTGTGAAA---ACA-----GCACAAA----CAATTGAAATTAA---TAAATA-----AATATGAGTTT-TGTTTTCC-AGCTTGTTCA-GGTTTGG--C-AATA-ATTATTCTT-CAAAT--AAGTAAAT----AATA
gi|3 : AAAC----AAT-TGAAAT-----------T-AA--TAAATAAA-TATGAGTT--TT-G-TTTTC-CAGCTTGTTCAGGTTTGGCA-ATA-----AT-TAT-TCTT-----CAAATAAG-TAAA-TAATA-----------------ATCGG-ATCA---AGCGGTAAAATCGTAGC-T--GA-AGC---AA-TAA------AT-TGAAATA-ATTCCTATA--T-ACTG-A-A---AACAAACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGG-TTA-AACTA-CAT-TACGATCATTT-CATTAA--A-GC-G-T-TAAA-GGC-ATT--AAA-A--TA---TAatcggatcaagcggtaaaatcgtagctgaagcaataaattgaaataattcctatatactgaaaacaaacaaaatatatttctaatatatatttaataggttaaactacattacgatcatttcattaaagcgttaaaggcattaaaatatacaacctattc
gi|4 : gggtcctactaaacagagtactttagagtactttagagtaacactggataataacgatgattctaagtaatacaacagattatctttatttatatacttaataaacattattgtttttgggccatccggatcccgattattattatttggtgagaatttagcatactacacagtgatcatttcacattcgggttagtcggaaaaacttattgcagttaaaacttaaaatactcccgtaaaattgctgtgaaaacagcacT-GCTGTGAAATAACATGC-AT-AAA---ACG-----A-ATTGA----CAATT-------AAAATAAATGT----AG-------TTTCG-TTTCCCAGCTTGTTCACGCTTTGAAGCAAATA-A-TATT-TT-AAATATAAAGTAAAT----AATATTGCTT-----------T--A--TAA-TGCAATGTAAATTGGTTTATGTTTCACA--------ACACATG-TAGATACTGCTATGTAT-TTTTATTGTTAAA-ATGGTAATGTTATA------TTT-------G-TCGGGATCA---AGCGGTAAT-TCGTAGCTT-TGA-AGC---AATTAA------AT-TGAAATAGATTCCTAAAA-T-ACTGAA-A---AATAAACA-A-AATAT------------ATTTTC-TAAGCATATA-TTAATAGG-CTA-AACTA-CAG--ACG--C--TT-CATT-A-CA-GCAG-T-T-AATGGA-TTT--AAA-A--T----TAACTA--TT-ATTCCC-ACG-TACTCCTAATGTACTCTA-------------------AA-----------AGTACTCTGTTTAA---G-TAGGACcaacctattc
gi|5 : aaaat-TTACA-----------GTAT-TTAGAG----------TA-CAC--G-GA-TATTAA------------------C--------------AGCCCATA---------A---TTC--CTAAGTA-ATGC-------AAC----TG----AA-TAA-TTTT
gi|5 : gagccg-ATGC-------A-C------ATAACA-CAAATTGTGCAATATTTGTCCTCAATTA-TT-GTTTTTAAGCGATG--CTAGAACCA-AAAACGGCATTCT-----------ATAAGT----AAAAAGTTTTG--CCATCCCGCGTCCGATTATT--TATT-----ATTTGGTGAGAATTTGGCA----TAGCGACCAC--CCAGGGTG--ATCATATATTCATTC-GGGTT-GTCGGAAAACCTATCAAGTTCTATCATAGAGAGAGAGATCACGATT-AT-AACGAGGAGAGAATAGCT-CCGCGCAATAGC-GTAAATTCCA-TGG-GTAAAAAATACGCATAAACATTGA----Catttatatgcttaaattatatacatgcacataacacaaattgtgcaatatttgtcctcaattattgtttttaagcgatgctagaaccaaaaacggcattctataagtaaaaagttttgccatcccgcgtccgattatttattatttggtgagaatttggcatagcgaccacccagggtgatcatatattcattcgggttgtcggaaaacctatcaagttctatcatagagagagagatcacgattataacgaggagagaatagctccgcgcaatagcgtaaattccatgggtaaaaaatacgcataaacattgacta
gi|6 : gagccgttacagtatttagagtacacggatattaacagcccataattcctaagtaatgcaactgaataattttatttatatgcttaaattatatacTTCC-AGCTTGTTCACGCTTTGA--TGAAT--AATG--CTT-CAATA--AAGTAAACTCAAAATATGGG-------------T-TA--TAAATG-A-GGTAAATTGGTT-A-GTTTCCTA--------ACACC-G-T---TAC-GAT-C-TATGTTTTAT-GTT--A-ATG-TAAT-TGAT-------------------CCGGAATC----AGCGGTAAC-CC-TAACATATGAGAGCCTAAA-TGAGACTCTAT---AAATA-ATTCCTAAAATT-ACTG-A-AGAGAGCAAACACA-GATATCACAATAAGAACA-CCAC-TAG--AGAGAGTGAATAG---TA-GAATG-AGG-TA--GTCA-----ACTAT-CA-GTAG-GATATATAGC-ATT--AAA-A--TATATTAA-TATTTT-TTTCCATTCGTTTCT-CTAAAGT-----------T-C--------TCTAA-----------AGTACTCTGTTT-AGATG-TAGGACta
gi|7 : atgttgATGTTTTTTCAATA--AAGTAAAT----AATATGG--------------T-TA--TAAATGCA-TGTAAATTGGTT-A-GTTT--CA-------CACACTTG-TA-A---------------TTTAT-GTTAAA-ATG-TAAT-TGATA------TTTGAATCGGGATCGGGATCA---AGCCGTATT-CCGTAGC-T-TGA-AGC---AA-TAC------AT-TGTAATG-ATTCCTAAAA-TAACTG-A-A---AAC-AACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGGTTTA-AATTA-CAGTTACAATCA-TT-CATTAATCA-GCCG-T-TAAATTGC-CTT--AAA-A--TA---TAA-TA--TT-TTT-CA-GTG-TACT-CTAAAGTACTCTAACGTA--C--------TCTAA-----------AGTACTCTGTTT-A---G-TAGGAC
gi|8 : aaatGGGTC-CT------A-CT---AAA-C--A-GAGTACT-TTAGA-----------G-------AAG-------------CACTGG-AA-AAATAA------------------CCATAATTCTAAGCTA----ATACAACAGATTA---TTT--TTATTCATATGCTTAAA--AACATTATTATAAAA-TAA-TTTTGCAATAGTTTTC-TCAATTAATTTGTTTTTA-GTGATGTTCTA-AAC-ATAAAACG-CATTCT-----------AT---TTAATAAAGGTTTTTG--CCATCCGAATCCCG---ATTATTATT-----ATTTGGTGAGAATTTAGCA----TA----CTACAACCAG--TGATATC-TTTAATCATTC-c
gi|9 : tTG-TGAT-TAATA------TTT-------GATCAGGATTGGTCAGCGGTTTA-CTG-AAA-T-TGA-AAC---TA-TGA------ATGTGAAATA-ATTC-TAAGA-T-ATTG-ATA---AACAAA-----AATAT------------A-TTTC-ACG-TATATATTTTATAGG-TTATAGCTATCTA-TATGA-CA-TT-CATGAA-TAGGCA--T-TACATTGCTATT--AGA-A--TT---TGA--------------------------AAAAAATTTCAACATAC-T--------TCTAA-----------AGTACTCTG-TT-A---G-TAGGAC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 11111111111 2222222222 77777777777777777777777777777777777777777777777777 2222222222222222 111 4444444444444444444444 11 111 22222 1111 1111 111 11 11 11 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 11 11 1111 55555555555555555555 22222222 333333333333333 444444444444444444 1111 1 111 111111 222222222222 22222222222 11111111111
lowQualScore : 4 111111 4 777 4 55 4 3 77777777777 99 3333333333 3 3 44 0 99999999999999999999999999999999999999999999999999 777 55 8 9999999999999999 0 6 6 8 8 0 8 11 222 5 0 0 5 2222222222222222222222 11 111 0 5 00000 7777 7777 333 11 11 0 2 8 66 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 8 11 6 88 3 1 6 99 2222 11111111111111111111 2 6 1 666 7 88888888 22 444444444444444 8 0 8 0 88 6 6 333333333333333333 1 3333 77 3 6 6 111 5 666666 5 5 5 5 5 5 888 4 4 444444444444 4 4 88 3 3 2 55 3 2 3 3 2 2 0 2 2 3 2 33 2 33 555 3 44 6 3 6 0 33 4 44444444444 55555555555 3 555 3
lowQualScore : . ...... . ... . .. . . ........... .. .......... . . .. . .................................................. ... .. . ................ . . . . . . . .. ... . . . . ...................... .. ... . . ..... .... .... ... .. .. . . . .. ......................................................................................................................................................... . . .. . .. . . . .. .... .................... . . . ... . ........ .. ............... . . . . .. . . .................. . .... .. . . . ... . ...... . . . . . . ... . . ............ . . .. . . . .. . . . . . . . . . . . .. . .. ... . .. . . . . .. . ........... ........... . ... .
lowQualScore : 0 555555 0 000 0 55 0 6 33333333333 44 2222222222 6 6 11 8 88888888888888888888888888888888888888888888888888 000 55 0 9999999999999999 1 7 7 0 0 8 0 88 000 0 8 8 0 8888888888888888888888 00 888 8 6 00000 0000 0000 888 00 00 8 8 0 00 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 0 00 4 66 5 0 7 22 1111 33333333333333333333 5 7 0 888 2 33333333 22 222222222222222 0 8 0 8 88 7 7 555555555555555555 0 3333 77 3 7 7 777 7 444444 7 7 0 0 0 0 888 4 4 555555555555 0 0 99 6 3 3 11 3 2 1 1 9 9 8 9 9 8 9 99 9 99 000 1 22 2 1 2 7 44 2 44444444444 88888888888 3 888 3
consensus : GGGGTC-CT------A-CT---AAA-C--A-GAGTACT-TTAGA-----------GTACGTTAGAG----------TA-CACTGG-AA-TAATAA------------------C--------------A----ATA---------A---TTT--CTAAGTA-ATGC-------AAC----TGATAAAA-TAA-TTTTGCAATAGTTGTC-TCAATTA-TTTGTTTTTA-GCGATGTTCTATAACCATAAAACGGCATTCT-----------AT---T----AAAGGTTTTTG--CCATCCCGATCCCGATTATTATTATT-----ATTTGGTGAGAATTTAGCA----TA----CTAC-ACCAG--TG--ATCATTTCATCATTC-GGGTTNGTCGGAAAAACTATCAAGNTCCACNATNGAGAGANGTATCGCGGTTAAT-AACNAGNTTAAAATAGCTCCCGCGCAAT-GC-GTAAAAT----TGC-GTGAAA---ACG-----ACATTGA----CAATT-------A---TAAATA-----AG-------TT-CG-TTTCC-AGCTTGTTCACGCTTTGA--CGAATA-AATGTTCTT-CAATA--AAGTAAAT----AATATGGNTT-----------T-TA--TAAATGCA-TGTAAATTGGTT-A-GTTTCACA-------CACACCTG-TA-ATAC-GCTAT-TAT-TTTTAT-GTTAAA-ATG-TAAT-TGATA------TTT-------GATCGGGATCA---AGCGGTAAN-CCGTAGC-T-TGA-AGC---AA-TAA------AT-TGAAATA-ATTCCTAAAA-T-ACTG-A-A---AACAAACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGG-TTA-AACTA-CAG-TACGATCA-TT-CATTAA-CA-GCAG-T-TAAATNGC-ATT--AAA-A--TA---TAA-TA--TT-TTTCCA-GCG-TACT-CTAAAGTACTCTAACGTAC-C--------TCTAA-----------AGTACTCTGTTT-A---G-TAGGAC
Reference ( family-8214 ) : GGGGTC-CT------A-CT---AAA-C--A-GAGTACT-TTAGA-----------GTACGTTAGAG----------TA-CACTGG-AA-TAATAA------------------C--------------A----ATA---------A---TTT--CTAAGTA-ATGC-------AAC----TGATAAAA-TAA-TTTTGCAATAGTTGTC-TCAATTA-TTTGTTTTTA-GCGATGTTCTATAACCATAAAACGGCATTCT-----------AT---T----AAAGGTTTTTG--CCATCCCGATCCCGATTATTATTATT-----ATTTGGTGAGAATTTAGCA----TA----CTAC-ACCAG--TG--ATCATTTCATCATTC-GGGTTNGTCGGAAAAACTATCAAGNTCCACNATNGAGAGANGTATCGCGGTTAAT-AACNAGNTTAAAATAGCTCCCGCGCAAT-GC-GTAAAAT----TGC-GTGAAA---ACG-----ACATTGA----CAATT-------A---TAAATA-----AG-------TT-CG-TTTCC-AGCTTGTTCACGCTTTGA--CGAATA-AATGTTCTT-CAATA--AAGTAAAT----AATATGGNTT-----------T-TA--TAAATGCA-TGTAAATTGGTT-A-GTTTCACA-------CACACCTG-TA-ATAC-GCTAT-TAT-TTTTAT-GTTAAA-ATG-TAAT-TGATA------TTT-------GATCGGGATCA---AGCGGTAAN-CCGTAGC-T-TGA-AGC---AA-TAA------AT-TGAAATA-ATTCCTAAAA-T-ACTG-A-A---AACAAACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGG-TTA-AACTA-CAG-TACGATCA-TT-CATTAA-CA-GCAG-T-TAAATNGC-ATT--AAA-A--TA---TAA-TA--TT-TTTCCA-GCG-TACT-CTAAAGTACTCTAACGTAC-C--------TCTAA-----------AGTACTCTGTTT-A---G-TAGGAC
gi|1 : GGGGTC-CT------A-CT---AAA-C--A-GAGTACT-TTAGA-----------GTACGTTAGAG----------TA-CACTGG-AA-TAATAA------------------C--------------C----ATA---------AAATTTT--CTAAGTA-ATGC-------AAC----TGATAAAAATAA-TTTTGCAATAGTTGTC-TCAATCA-TTTGTTTTTA-GCGGTGTTCTATAACCATAAAACGGCATTCT-----------AT---T----AAAGGTTTTTG--CCATCCCGATCAAGATTATTATTATTTGATAATTTGGTGAGAATTTAGCA----TA----CTAC-ACCAG--TG--ATCATTTCATCATTCTGGGCTC-TCGGAAAAACT-TCAAAATTCACAATCGA---ATGTATTGCAGTTAGTTAACTAGCTTAAAATA-CTCC------------GTAAA-T----TGC-AT-AAA---ACA-----ACATTGA----CTATT-------A---TAAA--------------------G-TTTTC-AGCTTGTTCACGCTTTGA--CGAATATAATGTTCTT-CAATA--AAGTAAAT----AATATGGTTTACAATGTACAATGTA--TAAATGCA-TGTAAATTAGTT-A-GTTTCACA-------CACACCTG-TA-ATAC-GCTAT-TAT-TTTTAT-GTTAAA--TG-TAAT-TGATACCGGTATTT-------GATCGGGATCA---AGCGGTAAA-CCGTAGC-T-TGA-AGC---AA-TAA------AT-TGAAATA-ATTCCTAAAA-T-ACTG-A-A---AACAAACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGG-TTA-AACTA-CAG-TACGATCA-TT-CATTAA-CA-GCAG-T-TAAATGGC-ATT--GAA-A--TA---TAA-TA--TT-TTTCCA-GCG-TACT-CTAAAGTATTCTAACGTAC-CGTACTCTATTTAA-----------AGTACTCTGTTT-A---G-TAGGAC
gi|10 : A-TAA------AC-TGAAATA-ATTCCTTAAA-T-GATG-A-A---AACAAACA-A-ATTAC------------A-TTTCACAA--ATATATCTGTTAGG-TTA-AGTTA--AG-TACGGGCA-TT-AATGAA-CT-GCAG-T-TAGAGTGC-AAT--GAATT--TA---TCA-TT--TT-CCCCCA-ACG-TACT-CTAAAGTACTCTAATGTAC--------------A-----------AGTACTTTGTTT-A---G-TAAGAC
gi|11 : gA-T-ACTG-A-A---AACAAACA-A-AATAT------------A-TTTC-TAA-AATATATTTAATAGG-TTA-AATTA-CAG-TACGATCA-TG-CATTAA-CA-CCAG-T-TAAATAGC-ATT--AAA-A--TA---TAA-TA--TT-TTTCCA-TCG-TTCT-CTAAAGT-----------T-C--------TCTAA-----------AGTACTCTGTTT-A---G-TAGGAc
gi|12 : GGTC-CT------AACT---AAA-C--A-GAGTAATATTAGAGTTAGTTAGAGGTACTTTAGAGA---------TA-CACTGGAAA-TAATAT------------------C-------------------ATATTTAT----A---TTTAGCTAAATA-
gi|12 : ACA-ATAATGTT-----------A-TTTA--AG-TATATATAAAATAGA-T-A-AA--A-TAA-TACATTGA-TTGTATT-------TAG-C-TAAAT----AT----AA-A--TA---TGA-TA--TTATTTCCA-GTG-TAT----------CTCTAAAGTAC-C--------TCTAACTAACTCTAATATTACTCTGTTT-A---GTTAGGACcaatcaatgtattattttatctattttatatatacttaaataacattattgtc
gi|13 : gTAT------------A-TTTC-TGA-TATATATTTAATAGG-TTA-AAATA-CAG-TACAATCA-TT-CATTAA-CA-GCAG-T-TAAATGGC-ATT--GAA-A--TA---TAA-TA---T-TTTCCA-GCA-TTCT-CTAAAGTATTATAACGTA--C--------TCTAA-----------AGTACTCTGTTT-A---G-TAGGACc
gi|14 : ATATATTTAATAGG-CTA-AACTA-CAG-TATGATCA-TT-CATTAA-CA-GCAG-T-TAAATAGC-ATT--AAG-A--TA---TAA-TA--TTCTTTCCA-GC------------GTACTCTAACGTA--C--------TCTAA-----------AGTACTCTGTTT-A---G-TAGGACc
gi|15 : agGTC-CT------A-C----AAA-CTCA-GAGTACT-TTAGA-----------GT-TG-TAGAGA---------TA--ACTGG-AA-AAAT-A------------------T--------------A----ATA---------A---TTC--AAGAGTA-ATTT-------AAC----TAATc
gi|16 : TA-AACTA--AG----GA-CA-CT-TACAAA-CA-ACGGCT-TAATTTAC--TT--GAA-T--TA---TGA-TA--TT-TTACCC-ACG-TACT-CTAAAGT-CTGTAACGTA--C--------TGTAG-----------CTTACTCTGTTC-A---G-AAGGACtttttatatggtaacacttaattaaactttgtta
gi|17 : cTTA-TT-CATTAA-CA-GC-G-T-TAAATGGC-CTT--AAA-ACATA---TAA-TA--TT-TTTTCA-GGGTTACT-CT-AAGTACTCTAACGTACTC--------TCC-A-----------AGT-CTCTGTTT-A---G-TAGGAC
gi|18 : GGGTC-CTGCGTATA-CT---AAA-C--A-GAATAC----AGA-----------GTACTTTAGAG----------TG-CGCTAA-AA-AAAT--------------------T--------------C----AT----------A---TGT--CAAAGTA-ATCC-------AAC----TGATc
gi|19 : accGGGGTCACT------A-CT---AAAAC--A-GAGTACT-TTAGA-----------GTAC---------------------ACTGG-AATTAATAA------------------C--------------T----ATA---------A----TT--CTTAGTA-ATGtatttatattattt
gi|2 : GGGTC-CT------A-CT---AAA-C--A-GAGTACT-T-AGA-----------GTACGCTAGAG----------TA-CACTGG-AA-TAATAACCATAATTCTAAGTAATGC--------------A----ACAGATT-----A---TTT--TTATTTATATGCTCAAATAAACATTATTATAAAA-TAA-TTTTGCAATAGATGTC-TCAATTA-TTTGTTTTTA-GCGATGTTC--TAACCATAAAACGGCATTCTATTACAATGTAAT---T----AAAGGTTTTTG--CCAT-CCGATCCCG---ATTATTATT-----ATTTGGTGAGAATTTAGCATACGTA----CTAC-AACAA--TG--ATCATTTCANNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN-NNNNNNN----NNN-NNNNNN---NNN-----NNNNNNATTGACAGTT-------A---TAGATAAATACAG-------TT-TG-TTTCC-AGCTTGTTCACGCTTTGA--CAAAT--AATGTTCTT-CAATA--AAATAAAT----AATATGGGTT-----------A-TAATTAAATGCA-TGTAAATTGGTT-A-GTTTCACA-------Cgcacagtattattttcatt
gi|20 : acaGGGTC-CT------A-CTGCAAAA-C--ATGAGTACT-TTAGA-----------GTACGTTAGAGTATTTAGAGTTA-CACTAG-GA-TAATAA------------------C--------------A----AT----------A---TTT--ATAA
gi|21 : cTTAA-TA-GTAT-T-TAA-TAGT-ATTCAAAA-A--TA---TGA-AA--TT-TTACCA-GTG-TACG-CTAACGTACTCT
gi|21 : aatGGTA-CT------A-CT---AAA-C--A-GAG----------------------TACGTTAGCG----------TA-CACTGG-TA-AAATgtttagtagtacc
gi|3 : aatttaatagtatttaatagtattcaaaaatatgaaGGGTC-CT------A-CT---AAA-C--A-GAGTACT-TTAGA-----------GTACTTTAGAG----------TAACACTGG-A--TAATAA------------------C--------------G----ATG---------A---TT---CTAAGTA-ATAC-------AAC----AGA---------------------TTATC-T---TTA-TTT-----------ATATACT-TAA---TAAA----CATT-------------AT---T--------GTTTTTGGGCCATCCGGATCCCGATTA---TTATT-----ATTTGGTGAGAATTTAGCA----TA----CTAC-A-CAG--TG--ATCATTTCA-CATTC-GGGTTAGTCGGAAAAACT------------------------TATTGCAGTTAA--AAC----TTAAAATA-CTCC----------C-GTAAAAT----TGCTGTGAAA---ACA-----GCACAAA----CAATTGAAATTAA---TAAATA-----AATATGAGTTT-TGTTTTCC-AGCTTGTTCA-GGTTTGG--C-AATA-ATTATTCTT-CAAAT--AAGTAAAT----AATA
gi|3 : AAAC----AAT-TGAAAT-----------T-AA--TAAATAAA-TATGAGTT--TT-G-TTTTC-CAGCTTGTTCAGGTTTGGCA-ATA-----AT-TAT-TCTT-----CAAATAAG-TAAA-TAATA-----------------ATCGG-ATCA---AGCGGTAAAATCGTAGC-T--GA-AGC---AA-TAA------AT-TGAAATA-ATTCCTATA--T-ACTG-A-A---AACAAACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGG-TTA-AACTA-CAT-TACGATCATTT-CATTAA--A-GC-G-T-TAAA-GGC-ATT--AAA-A--TA---TAatcggatcaagcggtaaaatcgtagctgaagcaataaattgaaataattcctatatactgaaaacaaacaaaatatatttctaatatatatttaataggttaaactacattacgatcatttcattaaagcgttaaaggcattaaaatatacaacctattc
gi|4 : gggtcctactaaacagagtactttagagtactttagagtaacactggataataacgatgattctaagtaatacaacagattatctttatttatatacttaataaacattattgtttttgggccatccggatcccgattattattatttggtgagaatttagcatactacacagtgatcatttcacattcgggttagtcggaaaaacttattgcagttaaaacttaaaatactcccgtaaaattgctgtgaaaacagcacT-GCTGTGAAATAACATGC-AT-AAA---ACG-----A-ATTGA----CAATT-------AAAATAAATGT----AG-------TTTCG-TTTCCCAGCTTGTTCACGCTTTGAAGCAAATA-A-TATT-TT-AAATATAAAGTAAAT----AATATTGCTT-----------T--A--TAA-TGCAATGTAAATTGGTTTATGTTTCACA--------ACACATG-TAGATACTGCTATGTAT-TTTTATTGTTAAA-ATGGTAATGTTATA------TTT-------G-TCGGGATCA---AGCGGTAAT-TCGTAGCTT-TGA-AGC---AATTAA------AT-TGAAATAGATTCCTAAAA-T-ACTGAA-A---AATAAACA-A-AATAT------------ATTTTC-TAAGCATATA-TTAATAGG-CTA-AACTA-CAG--ACG--C--TT-CATT-A-CA-GCAG-T-T-AATGGA-TTT--AAA-A--T----TAACTA--TT-ATTCCC-ACG-TACTCCTAATGTACTCTA-------------------AA-----------AGTACTCTGTTTAA---G-TAGGACcaacctattc
gi|5 : aaaat-TTACA-----------GTAT-TTAGAG----------TA-CAC--G-GA-TATTAA------------------C--------------AGCCCATA---------A---TTC--CTAAGTA-ATGC-------AAC----TG----AA-TAA-TTTT
gi|5 : gagccg-ATGC-------A-C------ATAACA-CAAATTGTGCAATATTTGTCCTCAATTA-TT-GTTTTTAAGCGATG--CTAGAACCA-AAAACGGCATTCT-----------ATAAGT----AAAAAGTTTTG--CCATCCCGCGTCCGATTATT--TATT-----ATTTGGTGAGAATTTGGCA----TAGCGACCAC--CCAGGGTG--ATCATATATTCATTC-GGGTT-GTCGGAAAACCTATCAAGTTCTATCATAGAGAGAGAGATCACGATT-AT-AACGAGGAGAGAATAGCT-CCGCGCAATAGC-GTAAATTCCA-TGG-GTAAAAAATACGCATAAACATTGA----Catttatatgcttaaattatatacatgcacataacacaaattgtgcaatatttgtcctcaattattgtttttaagcgatgctagaaccaaaaacggcattctataagtaaaaagttttgccatcccgcgtccgattatttattatttggtgagaatttggcatagcgaccacccagggtgatcatatattcattcgggttgtcggaaaacctatcaagttctatcatagagagagagatcacgattataacgaggagagaatagctccgcgcaatagcgtaaattccatgggtaaaaaatacgcataaacattgacta
gi|6 : gagccgttacagtatttagagtacacggatattaacagcccataattcctaagtaatgcaactgaataattttatttatatgcttaaattatatacTTCC-AGCTTGTTCACGCTTTGA--TGAAT--AATG--CTT-CAATA--AAGTAAACTCAAAATATGGG-------------T-TA--TAAATG-A-GGTAAATTGGTT-A-GTTTCCTA--------ACACC-G-T---TAC-GAT-C-TATGTTTTAT-GTT--A-ATG-TAAT-TGAT-------------------CCGGAATC----AGCGGTAAC-CC-TAACATATGAGAGCCTAAA-TGAGACTCTAT---AAATA-ATTCCTAAAATT-ACTG-A-AGAGAGCAAACACA-GATATCACAATAAGAACA-CCAC-TAG--AGAGAGTGAATAG---TA-GAATG-AGG-TA--GTCA-----ACTAT-CA-GTAG-GATATATAGC-ATT--AAA-A--TATATTAA-TATTTT-TTTCCATTCGTTTCT-CTAAAGT-----------T-C--------TCTAA-----------AGTACTCTGTTT-AGATG-TAGGACta
gi|7 : atgttgATGTTTTTTCAATA--AAGTAAAT----AATATGG--------------T-TA--TAAATGCA-TGTAAATTGGTT-A-GTTT--CA-------CACACTTG-TA-A---------------TTTAT-GTTAAA-ATG-TAAT-TGATA------TTTGAATCGGGATCGGGATCA---AGCCGTATT-CCGTAGC-T-TGA-AGC---AA-TAC------AT-TGTAATG-ATTCCTAAAA-TAACTG-A-A---AAC-AACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGGTTTA-AATTA-CAGTTACAATCA-TT-CATTAATCA-GCCG-T-TAAATTGC-CTT--AAA-A--TA---TAA-TA--TT-TTT-CA-GTG-TACT-CTAAAGTACTCTAACGTA--C--------TCTAA-----------AGTACTCTGTTT-A---G-TAGGAC
gi|8 : aaatGGGTC-CT------A-CT---AAA-C--A-GAGTACT-TTAGA-----------G-------AAG-------------CACTGG-AA-AAATAA------------------CCATAATTCTAAGCTA----ATACAACAGATTA---TTT--TTATTCATATGCTTAAA--AACATTATTATAAAA-TAA-TTTTGCAATAGTTTTC-TCAATTAATTTGTTTTTA-GTGATGTTCTA-AAC-ATAAAACG-CATTCT-----------AT---TTAATAAAGGTTTTTG--CCATCCGAATCCCG---ATTATTATT-----ATTTGGTGAGAATTTAGCA----TA----CTACAACCAG--TGATATC-TTTAATCATTC-c
gi|9 : tTG-TGAT-TAATA------TTT-------GATCAGGATTGGTCAGCGGTTTA-CTG-AAA-T-TGA-AAC---TA-TGA------ATGTGAAATA-ATTC-TAAGA-T-ATTG-ATA---AACAAA-----AATAT------------A-TTTC-ACG-TATATATTTTATAGG-TTATAGCTATCTA-TATGA-CA-TT-CATGAA-TAGGCA--T-TACATTGCTATT--AGA-A--TT---TGA--------------------------AAAAAATTTCAACATAC-T--------TCTAA-----------AGTACTCTG-TT-A---G-TAGGAC
blockSeqs : A GCGTAT A GCA A TC T A GTTAGTTAGAG TT TATTTAGAGT A A TT CCATAATTCTAAGCTAATACAACAGATT . AG T TCAAATAAACATTATT . A C A A TT TAG C G ATTACAATGTAATTA GG ATT A . TACG GCGA AAC GG AT N . NN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGACAGTTATAGATAAATACAGTTT T C AG A A A C T TA TCAA GTTATAAT C A G TAT A GCTTGTTC TT TAGATACTGCTATG G T TA G G TTTGAATCGGGA G GGTC AA T A G CTA T GACTCT G G T A A T GAG C T CACAATAAGAAC T A GC T T T TC T G T G T G C A T T CA T CA TAT C TT A T T TC A CTC CTAACTCTAAT A GAT T
blockSeqs : . . . . . . . . . TT A . . T CCATAATTCTAAGTAATGCAACAGATT . . T TTAAAAACATTATT . . . . . TA TT C G ATTTAATA . ATT A . . . AA . . T . AG TATTGCAGTTAAAACTTAAAATACTCCCGTAAAATTGCTGTGAAAACAGCACAAACAATTGAAATTAATAAATAAATATGAGTTTT . . . A A T C . . . AATTAA A . G A A C AT GCAATAAT . . A . . TTTGA A A T A . . . . . . . . . . . . . . T . . A . . T C . T . . . . . . A . . . . . . . C . T T A TC . . . .
blockSeqs : . . . . . . . . . GC A . . A CATATTTAT . . . AACTA . . . . . TT TA . . ATAAGTA . . . . . . A . . T . G . . . G . A C . . . CTTTA C . G G C C TT TTACGATC . . A . . TTTG G A C . . . . . . . . . . . . . . . . . . T . . A T . T . . . . . . G . . . . . . . . . . T A CC . . . .
blockSeqs : . . . . . . . . . GT . . . A CAGCCCATA . . . AACTG . . . . . . T . . ATT . . . . . . C . . . . . . . . A T . . . GTTA C . G A . . C TAA . . A . . A G A T . . . . . . . . . . . . . . . . . . T . . C C . T . . . . . . A . . . . . . . . . . T A TC . . . .
blockSeqs : . . . . . . . . . GT . . . T TAATA . . . AACAG . . . . . . . TTA . . . A . . . . . . . A . . . . . . . . . . . . . . . . . . T . . C C . T . . . . . . T . . . . . . . . . . T A CT . . . .
blockSeqs : . . . . . . . . . TT . . . T CTATA . . . AACTG . . . . . . . . . . . . . . . T . . C C . T . . . . . . G . . . . . . . . . . T A C . . . .
blockSeqs : . . . . . . . . . G . . . A CGATG . . . AC . . . . . . . . . . T . . C C . T . . . . . . A . . . . . . . . . . G A C . . . .
blockSeqs : . . . . . . . . . T . . . T TCAT . . . . . . . . . . . A A . T . . . . . . G . . . . . . . . . . T A C . . . .
blockSeqs : . . . . . . . . . . . . . T CAAT . . . . . . . . . T C . T . . . . . . G . . . . . . . . . . T . C . . . .
blockSeqs : . . . . . . A . . C . . . . . . . . . A . . . . . . . . . . . . C . . . .
blockSeqs : . . . . . . . . . . . T . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqCons : *** T** ATTAATA*************** *** ***** A** ** NTTA**************** TGCAT********** A* TTTGA************* C**********
originalCons : GGGGTC-CT------A-CT---AAA-C--A-GAGTACT-TTAGA-----------GTACGTTAGAG----------TA-CACTGG-AA-TAATAA------------------C--------------A----ATA---------A---TTT--CTAAGTA-ATGC-------AAC----TGATAAAA-TAA-TTTTGCAATAGTTGTC-TCAATTA-TTTGTTTTTA-GCGATGTTCTATAACCATAAAACGGCATTCT-----------AT---T----AAAGGTTTTTG--CCATCCCGATCCCGATTATTATTATT-----ATTTGGTGAGAATTTAGCA----TA----CTAC-ACCAG--TG--ATCATTTCATCATTC-GGGTTNGTCGGAAAAACTATCAAGNTCCACNATNGAGAGANGTATCGCGGTTAAT-AACNAGNTTAAAATAGCTCCCGCGCAAT-GC-GTAAAAT----TGC-GTGAAA---ACG-----ACATTGA----CAATT-------A---TAAATA-----AG-------TT-CG-TTTCC-AGCTTGTTCACGCTTTGA--CGAATA-AATGTTCTT-CAATA--AAGTAAAT----AATATGGNTT-----------T-TA--TAAATGCA-TGTAAATTGGTT-A-GTTTCACA-------CACACCTG-TA-ATAC-GCTAT-TAT-TTTTAT-GTTAAA-ATG-TAAT-TGATA------TTT-------GATCGGGATCA---AGCGGTAAN-CCGTAGC-T-TGA-AGC---AA-TAA------AT-TGAAATA-ATTCCTAAAA-T-ACTG-A-A---AACAAACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGG-TTA-AACTA-CAG-TACGATCA-TT-CATTAA-CA-GCAG-T-TAAATNGC-ATT--AAA-A--TA---TAA-TA--TT-TTTCCA-GCG-TACT-CTAAAGTACTCTAACGTAC-C--------TCTAA-----------AGTACTCTGTTT-A---G-TAGGAC
finalCons : GGGGTC-CT------A-CT---AAA-C--A-GAGTACT-TTAGA-----------GTACGTTAGAG----------TA-CACTGG-AA-TAATAA------------------C--------------A----ATA---------A---TTT--CTAAGTA-ATGC-------AAC----TGATAAAA-TAA-TTTTGCAATAGTTGTC-TCAATTA-TTTGTTTTTA-GCGATGTTCT--AACCATAAAACGGCATTCTATTAATA---------------AAGGTTTTTG--CCATCCCGATCCCG---ATTATTATT-----ATTTGGTGAGAATTTAGCA----TA----CTACA--CAG--TG--ATCATTTCATCATTC-GGGTTNGTCGGAAAAACTATCAAGNTCCACNATNGAGAGANGTATCGCGGTTAAT-AACNAGNTTAAAATAGCTCCCGCGCAAT-GC-GTAAAAT----TGC-GTGAAA---ACG-----ACATTGA----CAATT-------A---TAAATA-----AG-------TT-CG-TTTCC-AGCTTGTTCACGCTTTGA--CGAAT--AATGTTCTT-CAATA--AAGTAAAT----AATATGGNTTA----------------TAAATGCA-TGTAAATTGGTT-A-GTTTCACA-------CACACCTGTGCAT----------TAT-TTTTAT-GTTAAAA-TG-TAAT-TGATATTTGA-------------TCGGGATCA---AGCGGTAAN-CCGTAGC-T-TGA-AGC---AA-TAA------AT-TGAAATA-ATTCCTAAAA-T-ACTG-A-A---AACAAACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGG-TTA-AACTA-CAG-TACGATCA-TT-CATTAA-CA-GCAG-T-TAAATNGC-ATT--AAA-A--TA---TAA-TA--TT-TTTCCA-GCG-TACT-CTAAAGTACTCTAACGTAC----------TCTAA-----------AGTACTCTGTTT-A---G-TAGGAC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 2222222222 77777777777777777777777777777777777777777777777777 44444444444444444 11 4444444444444 11 22222222 1111 2222222 11 11 11 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 11 1111 1111 66666666666666 1 8888888888888 444444444444444444 1111 1 111 111111 222222222222 111111111
lowQualScore : 4 222222 777 4 66 4 0 99 1111111111 4 55 1 77777777777777777777777777777777777777777777777777 777 8 22222222222222222 6 6 8 8 8 0 0 8 5 11 5 0 0 5 8 0000000000000 11 8 99999999 7777 8 3333333 8 11 11 0 2 8 66 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 8 11 6 5555 1 6 99 4444 8 8 44444444444444 0 8 8 8 0 3 0 9999999999999 8 0 0 8 0 88 6 6 333333333333333333 1 3333 77 3 6 6 111 5 666666 5 5 5 5 5 5 888 4 4 444444444444 4 4 88 3 3 2 55 3 2 3 3 2 2 0 2 2 3 2 33 2 33 555 3 44 6 3 3 55 00 2 3 666666666 6 3 3 555 3
lowQualScore : . ...... ... . .. . . .. .......... . .. . .................................................. ... . ................. . . . . . . . . . .. . . . . . ............. .. . ........ .... . ....... . .. .. . . . .. ......................................................................................................................................................... . . .. . .... . . .. .... . . .............. . . . . . . . ............. . . . . . .. . . .................. . .... .. . . . ... . ...... . . . . . . ... . . ............ . . .. . . . .. . . . . . . . . . . . .. . .. ... . .. . . . .. .. . . ......... . . . ... .
lowQualScore : 4 888888 888 4 11 4 7 77 5555555555 0 44 9 22222222222222222222222222222222222222222222222222 888 9 00000000000000000 7 7 0 0 0 8 8 0 0 00 0 8 8 0 0 4444444444444 00 0 00000000 0000 0 8888888 0 00 00 8 8 0 00 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 0 00 4 0000 0 7 22 2222 8 0 00000000000000 8 0 0 0 0 2 2 6666666666666 0 8 8 0 8 88 7 7 555555555555555555 0 3333 77 3 7 7 777 7 444444 7 7 0 0 0 0 888 4 4 555555555555 0 0 99 6 3 3 11 3 2 1 1 9 9 8 9 9 8 9 99 9 99 000 1 22 2 1 1 55 66 4 1 777777777 7 3 3 888 3
consensus : GGGGTC-CT------ACT---AAA-C--A-GAGTACTTTAGAGTACGTTAGAG----------TA-CACTGGAA-TAATAA------------------C--------------A----ATA---------A---TTTCTAAGTA-ATGC-------AAC----TGATAAAA-TAA-TTTTGCAATAG-TTGTC-TCAATTA-TTTGTTTTTA-GCGATGTTCTA--ACCATAAAACGGCATTCTA-TTA-A-------TAAAGGTTTTTG--CCATCCCGATCCCGATTA-TTATTATTTG--------GTGAGAATTTAGCAT----AC-TAC----A--C-A--GTG--ATCATTTCATCATTC-GGGTTNGTCGGAAAAACTATCAAGNTCCACNATNGAGAGANGTATCGCGGTTAAT-AACNAGNTTAAAATAGCTCCCGCGCAAT-GC-GTAAAAT----TGC-GTGAAA---ACG-----ACATTGA----CAATT-------A---TAAATA-----AG-------TT-CG-TTTCC-AGCTTGTTCACGCTTTGA--CGAATA--A-TGTTCTT-CAATA--AAGTAAAT----AATATGGNTT-A-AAT----------TAAATGCA-TGTAAATTGGTT-A-GTTTCACACACACCTGTAG-----GCTAT-TAT-TTTTAT-GTTAAA-ATG-TAAT-TGATA------TTTGA-------TCGGGATCA---AGCGGTAAN-CCGTAGC-T-TGA-AGC---AA-TAA------AT-TGAAATA-ATTCCTAAAA-T-ACTG-A-A---AACAAACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGG-TTA-AACTA-CAG-TACGATCA-TT-CATTAA-CA-GCAG-T-TAAATNGC-ATT--AAA-A--TA---TAA-TA--TT-TTTCCA-GCG-TA-CTCTAAAGTAC-TCTAACGTAC---------TCT-AA-AGTACTCTGTTT-A---G-TAGGAC
Reference ( family-8214 ) : GGGGTC-CT------ACT---AAA-C--A-GAGTACTTTAGAGTACGTTAGAG----------TA-CACTGGAA-TAATAA------------------C--------------A----ATA---------A---TTTCTAAGTA-ATGC-------AAC----TGATAAAA-TAA-TTTTGCAATAG-TTGTC-TCAATTA-TTTGTTTTTA-GCGATGTTCTA--ACCATAAAACGGCATTCTA-TTA-A-------TAAAGGTTTTTG--CCATCCCGATCCCGATTA-TTATTATTTG--------GTGAGAATTTAGCAT----AC-TAC----A--C-A--GTG--ATCATTTCATCATTC-GGGTTNGTCGGAAAAACTATCAAGNTCCACNATNGAGAGANGTATCGCGGTTAAT-AACNAGNTTAAAATAGCTCCCGCGCAAT-GC-GTAAAAT----TGC-GTGAAA---ACG-----ACATTGA----CAATT-------A---TAAATA-----AG-------TT-CG-TTTCC-AGCTTGTTCACGCTTTGA--CGAATA--A-TGTTCTT-CAATA--AAGTAAAT----AATATGGNTT-A--------------TAAATGCA-TGTAAATTGGTT-A-GTTTCACACACACCTGT-------GC-AT-TAT-TTTTAT-GTTAAA-ATG-TAAT-TGATA------TTTGA-------TCGGGATCA---AGCGGTAAN-CCGTAGC-T-TGA-AGC---AA-TAA------AT-TGAAATA-ATTCCTAAAA-T-ACTG-A-A---AACAAACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGG-TTA-AACTA-CAG-TACGATCA-TT-CATTAA-CA-GCAG-T-TAAATNGC-ATT--AAA-A--TA---TAA-TA--TT-TTTCCA-GCG-TA-CTCTAAAGTAC-TCTAACGTAC---------TCT-AA-AGTACTCTGTTT-A---G-TAGGAC
gi|1 : GGGGTC-CT------ACT---AAA-C--A-GAGTACTTTAGAGTACGTTAGAG----------TA-CACTGGAA-TAATAA------------------C--------------C----ATA---------AAATTTTCTAAGTA-ATGC-------AAC----TGATAAAAATAA-TTTTGCAATAG-TTGTC-TCAATCA-TTTGTTTTTA-GCGGTGTTCTATAACCATAAAACGGCATTCTA-TTA-A----------AGGTTTTTG--CCATCCCGATCAAGATTA-TTATTATTTGATAATTTGGTGAGAATTTAGCAT----AC-TAC----A--CCA--GTG--ATCATTTCATCATTCTGGGCTC-TCGGAAAAACT-TCAAAATTCACAATCGA---ATGTATTGCAGTTAGTTAACTAGCTTAAAATA-CTCC------------GTAAA-T----TGC-AT-AAA---ACA-----ACATTGA----CTATT-------A---TAAA--------------------G-TTTTC-AGCTTGTTCACGCTTTGA--CGAATATAA-TGTTCTT-CAATA--AAGTAAAT----AATATGGTTT-ACAATGTACAATGTATAAATGCA-TGTAAATTAGTT-A-GTTTCACACACACCTGTAATAC--GCTAT-TAT-TTTTAT-GTTAAA--TG-TAAT-TGATACCGGTATTTGA-------TCGGGATCA---AGCGGTAAA-CCGTAGC-T-TGA-AGC---AA-TAA------AT-TGAAATA-ATTCCTAAAA-T-ACTG-A-A---AACAAACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGG-TTA-AACTA-CAG-TACGATCA-TT-CATTAA-CA-GCAG-T-TAAATGGC-ATT--GAA-A--TA---TAA-TA--TT-TTTCCA-GCG-TA-CTCTAAAGTAT-TCTAACGTACCGTACTCTATTT-AA-AGTACTCTGTTT-A---G-TAGGAC
gi|10 : A-TAA------AC-TGAAATA-ATTCCTTAAA-T-GATG-A-A---AACAAACA-A-ATTAC------------A-TTTCACAA--ATATATCTGTTAGG-TTA-AGTTA--AG-TACGGGCA-TT-AATGAA-CT-GCAG-T-TAGAGTGC-AAT--GAATT--TA---TCA-TT--TT-CCCCCA-ACG-TA-CTCTAAAGTAC-TCTAATGTAC--------------A-AGTACTTTGTTT-A---G-TAAGAC
gi|11 : gA-T-ACTG-A-A---AACAAACA-A-AATAT------------A-TTTC-TAA-AATATATTTAATAGG-TTA-AATTA-CAG-TACGATCA-TG-CATTAA-CA-CCAG-T-TAAATAGC-ATT--AAA-A--TA---TAA-TA--TT-TTTCCA-TCG-TT-CTCTAAAGT---T--------C---------TCT-AA-AGTACTCTGTTT-A---G-TAGGAc
gi|12 : ACA-ATAATGTT-----------A-TTTA--AG-TATATATAAAATAGA-T-A-AA--A-TAA-TACATTGA-TTGTATT-------TAG-C-TAAAT----AT----AA-A--TA---TGA-TA--TTATTTCCA-GTG-TATCTCTAAAGTACCTCTAACTAAC---------TCT-AATATTACTCTGTTT-A---GTTAGGAC
gi|13 : gTAT------------A-TTTC-TGA-TATATATTTAATAGG-TTA-AAATA-CAG-TACAATCA-TT-CATTAA-CA-GCAG-T-TAAATGGC-ATT--GAA-A--TA---TAA-TA---T-TTTCCA-GCA-TT-CTCTAAAGTAT-TATAACGTAC---------TCT-AA-AGTACTCTGTTT-A---G-TAGGACc
gi|14 : ATATATTTAATAGG-CTA-AACTA-CAG-TATGATCA-TT-CATTAA-CA-GCAG-T-TAAATAGC-ATT--AAG-A--TA---TAA-TA--TTCTTTCCA-GC------------GTAC-TCTAACGTAC---------TCT-AA-AGTACTCTGTTT-A---G-TAGGACc
gi|15 : agGTC-CT------AC----AAA-CTCA-GAGTACTTTAGAGT-TG-TAGAGA---------TA--ACTGGAA-AAAT-A------------------T--------------A----ATA---------A---TTCAAGAGTA-ATTT-------AAC----TAATc
gi|16 : TA-AACTA--AG----GA-CA-CT-TACAAA-CA-ACGGCT-TAATTTAC--TT--GAA-T--TA---TGA-TA--TT-TTACCC-ACG-TA-CTCTAAAGT-C-TGTAACGTAC---------TGT-AG-CTTACTCTGTTC-A---G-AAGGACtttttatatggtaacacttaattaaactttgtta
gi|17 : cTTA-TT-CATTAA-CA-GC-G-T-TAAATGGC-CTT--AAA-ACATA---TAA-TA--TT-TTTTCA-GGGTTA-CTCT-AAGTAC-TCTAACGTAC---------TCTCCA-AGT-CTCTGTTT-A---G-TAGGAC
gi|18 : GGGTC-CTGCGTATACT---AAA-C--A-GAATAC---AGAGTACTTTAGAG----------TG-CGCTAAAA-AAAT--------------------T--------------C----AT----------A---TGTCAAAGTA-ATCC-------AAC----TGATc
gi|19 : accGGGGTCACT------ACT---AAAAC--A-GAGTACTTTAGAGTAC---------------------ACTGGAATTAATAA------------------C--------------T----ATA---------A----TTCTTAGTA-ATGtatttatattattt
gi|2 : GGGTC-CT------ACT---AAA-C--A-GAGTACTT-AGAGTACGCTAGAG----------TA-CACTGGAA-TAATAACCATAATTCTAAGTAATGC--------------A----ACAGATT-----A---TTTTTATTTATATGCTCAAATAAACATTATTATAAAA-TAA-TTTTGCAATAG-ATGTC-TCAATTA-TTTGTTTTTA-GCGATGTTCTA--ACCATAAAACGGCATTCTA-TTACAATGTAATTAAAGGTTTTTG--CCAT-CCGATCCCGATTA-TTATTATTTG--------GTGAGAATTTAGCAT----ACGTACTACAA--C-A--ATG--ATCATTTCANNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN-NNNNNNN----NNN-NNNNNN---NNN-----NNNNNNATTGACAGTT-------A---TAGATAAATACAG-------TT-TG-TTTCC-AGCTTGTTCACGCTTTGA--CAAATA--A-TGTTCTT-CAATA--AAATAAAT----AATATGGGTT-ATAAT----------TAAATGCA-TGTAAATTGGTT-A-GTTTCACACgcacagtattattttcatt
gi|20 : acaGGGTC-CT------ACTGCAAAA-C--ATGAGTACTTTAGAGTACGTTAGAGTATTTAGAGTTA-CACTAGGA-TAATAA------------------C--------------A----AT----------A---TTTATAA
gi|21 : cTTAA-TA-GTAT-T-TAA-TAGT-ATTCAAAA-A--TA---TGA-AA--TT-TTACCA-GTG-TA-CGCTAACGTAC-TCT
gi|21 : aatGGTA-CT------ACT---AAA-C--A-GAG----------TACGTTAGCG----------TA-CACTGGTA-AAATgtttagtagtacc
gi|3 : aatttaatagtatttaatagtattcaaaaatatgaaGGGTC-CT------ACT---AAA-C--A-GAGTACTTTAGAGTACTTTAGAG----------TAACACTGGA--TAATAA------------------C--------------G----ATG---------A---TT-CTAAGTA-A---------------------------------TACAACAGATTATC-T---TTA-TTTAT---------ATACT-TA--A---TAAA----CATT--A-TT---------------GTTTTTGGGCCATCCGGATCCCGATTA-TTATTATTTG--------GTGAGAATTTAGCAT----AC-TAC----A--C-A--GTG--ATCATTTCA-CATTC-GGGTTAGTCGGAAAAACT------------------------TATTGCAGTTAA--AAC----TTAAAATA-CTCC----------C-GTAAAAT----TGCTGTGAAA---ACA-----GCACAAA----CAATTGAAATTAA---TAAATA-----AATATGAGTTT-TGTTTTCC-AGCTTGTTCA-GGTTTGG--C-AATA--ATTATTCTT-CAAAT--AAGTAAAT----AATA
gi|3 : -AT-TAT-TCTT-----CAAATAAG-TAAA-TAATA----------A-------TCGG-ATCA---AGCGGTAAAATCGTAGC-T--GA-AGC---AA-TAA------AT-TGAAATA-ATTCCTATA--T-ACTG-A-A---AACAAACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGG-TTA-AACTA-CAT-TACGATCATTT-CATTAA--A-GC-G-T-TAAA-GGC-ATT--AAA-A--TA---TAatcggatcaagcggtaaaatcgtagctgaagcaataaattgaaataattcctatatactgaaaacaaacaaaatatatttctaatatatatttaataggttaaactacattacgatcatttcattaaagcgttaaaggcattaaaatatacaacctattc
gi|4 : gggtcctactaaacagagtactttagagtactttagagtaacactggataataacgatgattctaagtaatacaacagattatctttatttatatacttaataaacattattgtttttgggccatccggatcccgattattattatttggtgagaatttagcatactacacagtgatcatttcacattcgggttagtcggaaaaacttattgcagttaaaacttaaaatactcccgtaaaattgctgtgaaaacagcacaaacaattgaaattaataaataaatatgagttttgttttccagcttgttcaggtttggcaataT-GCTGTGAAATAACATGC-AT-AAA---ACG-----A-ATTGA----CAATT-------AAAATAAATGT----AG-------TTTCG-TTTCCCAGCTTGTTCACGCTTTGAAGCAAATA--A-TATT-TT-AAATATAAAGTAAAT----AATATTGCTTTA--------------TAA-TGCAATGTAAATTGGTTTATGTTTCACA-ACACATGTAGATACTGCTATGTAT-TTTTATTGTTAAA-ATGGTAATGTTATA------TTTG--------TCGGGATCA---AGCGGTAAT-TCGTAGCTT-TGA-AGC---AATTAA------AT-TGAAATAGATTCCTAAAA-T-ACTGAA-A---AATAAACA-A-AATAT------------ATTTTC-TAAGCATATA-TTAATAGG-CTA-AACTA-CAG--ACG--C--TT-CATT-A-CA-GCAG-T-T-AATGGA-TTT--AAA-A--T----TAACTA--TT-ATTCCC-ACG-TA-CTC----------CTAATGTAC---------TCTAAA-AGTACTCTGTTTAA---G-TAGGACcaacctattc
gi|5 : aaaatTTACAGTAT-TTAGAG----------TA-CAC--GGA-TATTAA------------------C--------------AGCCCATA---------A---TTCCTAAGTA-ATGC-------AAC----TG----AA-TAA-TTTT
gi|5 : gagccg-ATGC-------A-C------ATAACA-CAAATTGTGCAATAT-TTGTCCTCAATTA-TT-GTTTTTAAGCGATGCTAGA--ACCA-AAAACGGCATTCTA-TAA-G-------TAAAAAGTTTTG--CCATCCCGCGTCCGATTATTTATTATTTG--------GTGAGAATTTGGCATAGCGAC-CAC----C--C-AGGGTG--ATCATATATTCATTC-GGGTT-GTCGGAAAACCTATCAAGTTCTATCATAGAGAGAGAGATCACGATT-AT-AACGAGGAGAGAATAGCT-CCGCGCAATAGC-GTAAATTCCA-TGG-GTAAAAAATACGCATAAACATTGA----Catttatatgcttaaattatatacatgcacataacacaaattgtgcaatatttgtcctcaattattgtttttaagcgatgctagaaccaaaaacggcattctataagtaaaaagttttgccatcccgcgtccgattatttattatttggtgagaatttggcatagcgaccacccagggtgatcatatattcattcgggttgtcggaaaacctatcaagttctatcatagagagagagatcacgattataacgaggagagaatagctccgcgcaatagcgtaaattccatgggtaaaaaatacgcataaacattgacta
gi|6 : gagccgttacagtatttagagtacacggatattaacagcccataattcctaagtaatgcaactgaataattttatttatatgcttaaattatatacTTCC-AGCTTGTTCACGCTTTGA--TGAATA--A-TG--CTT-CAATA--AAGTAAACTCAAAATATGGGTT-A--------------TAAATG-A-GGTAAATTGGTT-A-GTTTCCTA-ACACCGTT-------ACGATCTATGTTTTAT-GTT--A-ATG-TAAT-TGAT-------------------CCGGAATC----AGCGGTAAC-CC-TAACATATGAGAGCCTAAA-TGAGACTCTAT---AAATA-ATTCCTAAAATT-ACTG-A-AGAGAGCAAACACA-GATATCACAATAAGAACA-CCAC-TAG--AGAGAGTGAATAG---TA-GAATG-AGG-TA--GTCA-----ACTAT-CA-GTAG-GATATATAGC-ATT--AAA-A--TATATTAA-TATTTT-TTTCCATTCG-T----------TTC-TCTAAAGTTC---------TCT-AA-AGTACTCTGTTT-AGATG-TAGGACta
gi|7 : atgttgAATA----TGTTTTTTCAATA--AAGTAAAT----AATATGG-TT-A--------------TAAATGCA-TGTAAATTGGTT-A-GTTTCACACAC--TTGT-------A------AT-TT--AT-GTTAAA-ATG-TAAT-TGATA------TTTGAATCGGGATCGGGATCA---AGCCGTATT-CCGTAGC-T-TGA-AGC---AA-TAC------AT-TGTAATG-ATTCCTAAAA-TAACTG-A-A---AAC-AACA-A-AATAT------------A-TTTC-TAA-TATATATTTAATAGGTTTA-AATTA-CAGTTACAATCA-TT-CATTAATCA-GCCG-T-TAAATTGC-CTT--AAA-A--TA---TAA-TA--TT-TTT-CA-GTG-TA-CTCTAAAGTAC-TCTAACGTAC---------TCT-AA-AGTACTCTGTTT-A---G-TAGGAC
gi|8 : aGGGTC-CT------ACT---AAA-C--A-GAGTACTTTAGAG-------AAG-------------CACTGGAA-AAATAA------------------CCATAATTCTAAGCTA----ATACAACAGATTA---TTTTTATTCATATGCTTAAA--AACATTATTATAAAA-TAA-TTTTGCAATAG-TTTTC-TCAATTAATTTGTTTTTA-GTGATGTTCTA--AACATAAAAC-GCATTCTATTTA-A-------TAAAGGTTTTTG--CCATCCGAATCCCGATTA-TTATTATTTG--------GTGAGAATTTAGCAT----AC-TAC----AACC-A--GTGATATC-TTTAATCATTC-c
gi|9 : tTG-TGAT-TAATA------TTTGA-------TCAGGATTGGTCAGCGGTTTA-CTG-AAA-T-TGA-AAC---TA-TGA------ATGTGAAATA-ATTC-TAAGA-T-ATTG-ATA---AACAAA-----AATAT------------A-TTTC-ACG-TATATATTTTATAGG-TTATAGCTATCTA-TATGA-CA-TT-CATGAA-TAGGCA--T-TACATTGCTATT--AGA-A--TT---TGA--------------------------AAAAAAT-TTCAACATACT--------TCT-AA-AGTACTCTG-TT-A---G-TAGGAC