lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111
lowQualScore : 7777777777 111 2222 111111111111111111111111111111111111111111111111111111111111111111111 111 111 111 6666666666666 555555555555555 44444444444444444444444444 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 3333 555555555555555 1 22222222222222222 222222 22 3333333333333 1 2 1 3333 4 666666666666666666 11 1 7777777777 2 5555555 2222222 222222222222222222222222222222222222222222222222222222222222222222222222 44 777777777777777777 1111111 3333333 1 55555555555 33333 11 1 666666666666666666666666666666666666666666666666666666666666666 555 7777777777777777 1 3 3333 1 55 33333333333333333333333 4 33 33 4 6666666666 1 222222 11 444444444 1 22222 2222 88888888 33333 44444444 2 11 3333333333 22 2 11 1 55555555555555 222 2 55555 4 444444 4 1 1 2 4 4 4 4 1 4 1 4 4 666 2 444444 4 4 2 2 55 2 4 4 444 11
lowQualScore : 5 6666666666 000 77 4444 5 9 5 5 5 888888888888888888888888888888888888888888888888888888888888888888888 5 5 000 6 555 6 333 0 0000000000000 8 888888888888888 0 0 1 0 666 66666666666666666666666666 8 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 6 3333 6 99 0 999999999999999 3 6 99999999999999999 6 000000 44 6666666666666 3 0 6 3 7 8888 0 777777777777777777 77 5 7777777777 3 0 6666666 7777777 000000000000000000000000000000000000000000000000000000000000000000000000 6 00 999999999999999999 8 7777777 3333333 0 00000000000 2 22222 2 2 11 6 3 6 999999999999999999999999999999999999999999999999999999999999999 555 2 8 5555555555555555 0 2 3 2222 3 55 22222222222222222222222 0 55 55 0 0 2222222222 2 6 3 3 333333 5 11 77 5 5 222222222 1 5 7 2 5 44444 0000 44444444 1 1 6 88888 22222222 6 11 0 5555555555 0 44 1 3 99 6 0 88888888888888 0 3 8 888 8 8 0 33333 0 222222 0 5 5 3 0 0 0 0 5 0 5 0 0 111 0 222222 0 0 0 0 55 0 4 0 0 555 88
lowQualScore : . .......... ... .. .... . . . . . ..................................................................... . . ... . ... . ... . ............. . ............... . . . . ... .......................... . ............................................................................................................................ . .... . .. . ............... . . ................. . ...... .. ............. . . . . . .... . .................. .. . .......... . . ....... ....... ........................................................................ . .. .................. . ....... ....... . ........... . ..... . . .. . . . ............................................................... ... . . ................ . . . .... . .. ....................... . .. .. . . .......... . . . . ...... . .. .. . . ......... . . . . . ..... .... ........ . . . ..... ........ . .. . .......... . .. . . .. . . .............. . . . ... . . . ..... . ...... . . . . . . . . . . . . . ... . ...... . . . . .. . . . . ... ..
lowQualScore : 7 7777777777 000 99 7777 7 3 7 7 7 000000000000000000000000000000000000000000000000000000000000000000000 7 7 000 7 888 7 555 6 6666666666666 0 666666666666666 8 8 4 8 888 44444444444444444444444444 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 7 5555 7 22 8 333333333333333 3 7 00000000000000000 7 555555 44 2222222222222 5 0 7 3 3 7777 0 777777777777777777 55 0 5555555555 0 0 0000000 0000000 222222222222222222222222222222222222222222222222222222222222222222222222 7 00 888888888888888888 0 8888888 5555555 0 66666666666 2 22222 8 8 00 6 0 6 222222222222222222222222222222222222222222222222222222222222222 000 0 2 5555555555555555 5 5 8 2222 3 00 00000000000000000000000 0 55 55 0 8 2222222222 5 7 7 3 888888 7 77 99 7 7 777777777 4 7 9 0 0 66666 0000 55555555 7 7 7 33333 55555555 4 00 8 0000000000 8 55 7 7 33 7 8 00000000000000 8 2 0 222 0 0 0 00000 0 000000 0 0 5 0 0 0 0 0 0 0 0 0 0 000 0 000000 0 0 0 0 00 0 0 0 0 000 00
consensus : ATAT-CAATTGCCT-TGA-GC-CCTCTC---CGA--TTTTTCTGA-AT-T-TCAAAAC-CG-ACT-TTGC---------------------CG----------------------AAAT-------AT-AA---G----GTCGC-C-TAG---TTTTCG-AC--GTT-TTACTCT-GGAATACACTNATAGNATGTATTTTTA-GTTTGAAATTAGAATATAAATGTCAGAAATTCAATGGAATTTTG---A-GGCT--CATTGGCTCGAAA--TTGCAATGGC-TCGAAACACCTATGA-AG-TCGCA--ATTAAGACCATTTTTGTTGT--TCCCTTCT-CGG-ACTG-G-AACGT-ACTTTAA--ACTT-TCGATA-----GC---NC--A--CA-CCTTTTG------GCTC-GA--ACTGTTTT-CAATGGTCCCTT--GCTTTGACTGTACACC---------------AATC-C-AC--A--CTT-G-------TGT-GTGATGTAAC--ACCCCCN-CCCCCC----CAAACCAT-GGTATATCTG-AAATTGAAAATTAACTGCGTG-TTAAATACCTTTTTCCG-AATCTACCTTCA-TCA-GACAC-ACTAGGAGGCAGGGGCGGATCCATGATAAAATTTNGTGATTGGGGGGGG-ACGAAAATTACCGGCGAGGGGTCTGGATCCAGCGNAGAAGACCTGNCGTAGGAGNCGCCCGGCGGGGTCCGGGGCGGAGCCCCTGGT-TGTGAACCCGGCCTC--CCAGAAGCTGACG---TT---GAA------AGCTTTTCCGGCCGC-AACTGT---G-ATT----ATAAT-TGTA---------T-CTTTCCGAATATTATGATCTCAGGATGATTT--TAATGT-TATAACGACGGTAGGCAAAGATT-ATGAANCAGTT-TGTCAATNNCTTTTTANAGTTC--AATAGA----T--AAATTTACTGGTGGCAAA--AGTTCAGTTAATATAATGT-ACACTA---GTTTATAGC-ATGTT-AC-AA-AAGATATTCAGTGTA--TTTCTTTTTATTATGTTTT---GATT-TTGCA---ATACA--CATACA-CAGAGAGAGAGAGAGAGAGA-GAGAGNTTACATAAACTA-AAT--T-TGTCCAA-CCTCCC-AGGCCCT---CA-CC-AAA--GGATT-CCTTT-TT----G--T-TGTTTTTTT-AATAGCAATTTTGTTT----TATTAA----TATAAA--CA-TTTACAAGTATTCTC-TAAGA-AGACT------GTACACGCCCAAAGT--TTATAT----------ACATGTACTTT-CCGTTCTT-ACACATG-ATCCAAGG-ATACAATCTCGTTT-AAGTATG-TG-TAACATGATTATGTACCGGTATCATGT-TAA-AACAAT-A-CTTATGGG-ATA-TTACGATA-TTCTGTGACA-ATGATCTG-AAAAAGACTTGCGACTTCTTTTCTTT-CTGTA-GGGTCCATAAT-GTTTCTCTGGTCCAATTTTTAAACCCCG-AAAAGTCCGTTGCTGAGCACGCTTAGTCTG--GAAACGCGCAAAAAAAACACGGATAGTCCGTCCCCAT-TCCACACCGTGAT-AACTAACAACAAAAACAAGAAAATGAGTTTCA-GTATAATATGTTTTAT--AAATACNTGCTTGTGGTGCAGACAA-TATACAATACTCATCAAAAAGTTA-GCAGTCCAAATAATTATATTCCCTC
Reference ( gi|1 ) : ATAT-CAATTGC---TGAAGCGCCTCTC---CGA--TTTTTCTGA-ATCT-TCAAATC-CG-ACT-TTGC---------------------CG----------------------AAA--------AT-AA---G----GTCGC-C-TAG---TTTTCG-AC--GTT-TTACTCT-GAAATACACTGGTAGCATGTATTTTCA-GTTTGAAATTAGAATAGAAATGTCAGAAATTCAATGGAATTTTG---A--GCT--CATTGGCTCG-A---TTGCAATGGC-TCGACACACCTATGA-TG-TTGCATTATTAAGACCATTTTTGTTGTTTTCCCTTCT-CAGTATTG-GAAACGT-ACTTTAAGGACTTGTCGATA---CGGC---GC--A--CG-ACTTTTGTGTGGCGCTC-GA--CGTGTTTT-CAATGGTCCCTT--GCTTTGACTGTACACCGAATGTTCC-G--TGAATC-C-AC--A--CTT-G-------TGT-GTGATGTAAC--ACCCCCG-CCCCCC----CAAGCCCT-GGTATATCTG-AAATTGAAAATT-ACTGCGTG-TTAAATACTGTGTTCCGAAATCTACCTTCAGTCAGGACA--ACTCGGTGGCAGGGGCGGATCCATAATAGAACTTTGTG-TTGGGGGGGGAACGAAAATT-CCGGT-AAGGGTC-----------GAGAAGACCGGGCTTAGAAGTCGCCCAGCGGGGTCCAGGGCAGAGCGCCGGGTGTGTGAATCCCGCCTCGGCCAGAAGCTGACGGGTTT---GAA------AGCTTTTCTGGCCGC-AACTGT---G-ATT----AT-AT-TGTA---------T-CTTTCCGAA-ATT-TGATCTCAGGATGATTT--TAATGTGTATGACGATGGTAGGCAAAGAAT-ATGAAGCAGTT-TGTCGATGCTTTTTTATAGTTC--AATAGA----T--AAATTGACTGGTGGCAAAGTGGTCCAGTTGATAGAATGTAACACTAGGTGTTAATAGCGATGTTCACAAA-AAGATATTCAGTGTAATTTTCTTTTTATTATGTTTTGCGGATTGTTGCAAATATGCATGCATACAGCAGAGA-AGAGA-AGAGAGACGAGAGATTACATAAACCA-AATGGTGTGTCCAA-CCTTCC-AGGC-TT---CA-CC-GAA--GGATT-CCTTT-TT----G--TGTGTTTTTTT-AATAGCAATTTTGTTT----TATTAA----TATAAAAACAGTTTACAAGTATTCTC-TAAGAGAGACT------G-ACACGCTCAAAGT--TTATAT----------ACATGTACTTTTCCGTTCTTTACACATG-TTCCAAGG-ATACAATGTCGTGTGAAGTATGGTG-TAACATGATTATGTACCGGTATCATGT-T-A-AACAAT-A-CT-ATGGGGATAGTTACGATAATTCTG-GACAGATGATCTGTAAAAAGAATTGCGACTTCTTCTCTTTGCTGTACGGGTC-ATAATTGTTTCTCTGTTCCA-TTTTTAAACGCCGGAAAAGTCCGTTGCTGAG-ACGCTTAGTCTGTGAAAACGCGC-AAAAAAACACGGATAGTCCGTCCCCATCTCCA-ACCGTGATAAACTAACAACAAAAACAAGAAAATGAGTTTCAGGTAT-ATATG-TTTATGAAAAT-CATGCTTGTGGTGC-GACAAGTATACAATACTCATCAAAAAGTTAGGAAGTCCAAATAATTATATTCCCTC
gi|2 : ATAT-CACATGCGCCTGA-GC-CCTCTC---CGA--TTTTTCTGACAT-T-TCAAATC-CG-ACT-TTGC---------------------CG-----------------------AA--------AT-AA---G----GTCGC-CTTAGTTTTTTTCG-AC--GTT-TTACTCT-G-AATACACGTGTA-CATGTATTTTCATGTTTG--ATTAGAATATAAATG-CAGAAATTCAATGGAATTTTGCCAG--GCT--CATTGGCTCGAA---TTGCAATGCA-TCGA-ACA-CTATGA-AGATTGCA--ATTAA-ACCATTTTTGTTG---TCCCTTCT-CAG-ATTG---AACGT-ACTTTA---ACTT-CCGATA-----GC---TCAAA--CA-CCTCTT-------GCTC-GA--ACTGTTTT-CAATGGTCCCTT--GCTTTGAC--TACACCAA----TCCAG--TGAATCACAAC--A--ATTCG-------TGTGGTGATGT-AC--AGCCCCACCCCCCC----CAAACCAT-GGTATATCTGAAAATTGAAAATTAACTGCGTG-TTAAATACCTTTTTCCG-AATCTACCTTCA-TCA-GACA-----CATAGGCAGGGGCGGAT-CA----AAAATTTGGTG-TTGGGGGG---ACG-AAATT-CTGGTGAAGGGTC-----------TAGAA-ACC--GCTTA-AAGTC-CCCAGC--GGTCCAGGGCAGAGC-CCTGGT-TGTGAACCCGGCCTC--CCAGAAGCTGACG---TT---G-A------AGCTTTTCTGGCCGC-AACTGT---G-ATT----ATAAT-TGTA-----------CTTTCCGAATATTATGATCTCAGGATGATTTTGTAATGT-TATAACGAT-GTAGGCAAAGATTAATGAA-CAGTTGTGTCAAT--CTTTTTA-AGTTCCAAATAGA----TAAAAATTTACT-GTGGCAAA--AGTTCAGTTAATATAATGT-ACACTA---GTTTATAGC-ATGTT-AC-AA-AAGATATTCAGTGTA--TTTCTTTTTATTATGTTTT---GAT--TTGCA---ATACA--CATACA-CAGAG--AGAG--AGAGAGA-GAGAG
gi|3 : ATAT-CAATTGCCT-TGA-GC-CCTCTC---CGA--TTTTTCTGA-AT-T-TCAAATC-CG-ACT-TTGC---------------------CG----------------------AAA---------T-AA---G----GTCGC-C-TAG---TTTTCG-AC--GTT-TTACTCT-GAAATACACTG-TA-CATGTATTTTCA-GTTTGAA-TTAGAATATAA-TGTCAGAAATTCAATGGAATTTTG---AAGGCT--CATTGGCTCG-AA--TTGCAATGGC-TCGA-ACAC---TAA-AG-TTGCA--ATTAA-ACCATTTTTGTTGT---CCCTTCT-CAG-ATTG-GAA-CGT-ACTTTAA---CTT--CGATA-----GC---TC--AAACA-CCTTTTG-------CTC-GA--ACTGTTTT-CAATGGTCCCTT--GCTTTGACTGTACACTAA----TCC-AGTTGAATCAC-AA--A--TTC-G-------TGT-GTGATGTA-C--ACCCCAC-CCCCCC----CAAACCAT-GGTATATCTG-AAATTGAAAATA-ACTGCGTGTTTAAATACCTTTTTCCG-AATCTACCTTCA-TCA-GACAC-ACTAGG
gi|4 : ATAT-CAATTGCCT-TGA-GC-CCTCTC---CGT--CTTTTCTGA-AT-T-CCAAAAC-TG-ACT-TTGC---------------------CG----------------------AAATAC-----AT-AAAAAG----GTCGC-C-TAG---TTTTCG-AG--GTT-AAACTTT-TGACTAT--TTAAAGAA-ATATTTTTA-ATTTGAA-------TA----TGTCAGAAATACAATGGAATTTCG---ATGGCT--CATTAGCTCGAA---TTGCAATGGC-TCGA-ACA-CTATGAGTG-TCGC-------AAACCA-TTTTGTTG---TCCCTTGT-CGG-ACTG-G-AACGT-ACTATAA-----CATCGATA---GTTC---GA--A--TA-CCCTCTAT------CTC-GA--ACTGTTTT-CAATGGTCCCTT--GGTTTGACTGTACACC--AT-------------TC-C-ACA-A--CTT-G-------TAT-GTGATG------ACCCCCC-CCCCCC----nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtgaacccggcctcccagaagctgacgttgaagcttttctggccgcaactgtgattataattgtactttccgaatattatgatctcaggatgattttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttactgtggcaaaagttcagttaatataatgtacactagtttatagcatgttacaaaagatattcagtgtatttctttttattatgttttgattttgcaatacacatacacagagagagagagagagag
gi|6 : tattaaggattaacctttgtctatgttttacggtgaattcgtgttaactttacttaatttctgcagatttgattcacattaaaaagctttgcaattgttttgaatgtcaattttgtacgtagccgataatttggggtataattcttttgtattcagtggggtgtgtggtttttttttttggtttttttttcttttgatttttaggtagagttttttcacgtccctgacgcactgtcgtcaattacaatgtactagtataataatatataaagttacccactcttttcgttgaattgttttgtgcgtccgttgttaacttcgaacagctattcaagaatttttaattcgcaatatttcatgaaactttgtgtatttttatATATTCAATGCC---TTGAGC-CCTCTC----GA--TTTT-CTCA-ATTT-CAAAAGCACG-ACT-TTGC---------------------CG----------------------AAATACACACAATTAA---G----GTTGC-T-TAG---TTTTTG-A---GTT-TT-CTCT-TGACTA-ATTAA-AGAA---ATTATTG-GTTCG-AATTTGAATAT--ATGTCAGAAATACAA-------TTG------GCTCACATTA---CA-AAATTTGCAATGTC-TCGTAACACTT-------------------AGAC-----TTG-AGTTGTCTATTCT-CAG-ACTG-G-AACGT-ACCATA---ACC--TCGATA-----GCTCTAC--A--CC-AATTT-------AGCTC-GAACTGTGTTGT-CAATGGTCACTTAGGC-TTGACTGTACACC---------------AATC-C-ACAAA--CTT-GTGTGTAATGT-GTGATGCAACCAGCCACCA-CCCTCCATTTAAAACCATGGGTTTATCAG-AA
gi|11 : ggttagagtttttccacgtccctggtgtactccctcaattactaaacacagttgtttaagttaccccctcttttcgttgaaataatttgtgcgtccgtttgtcaacttcgagcagcatttactcaaaatcttttaattcacgaaaatggctgatattttgagtatttttgtatatttatATAT-CAATTGC---TGA-GT-CCTGTC---CGA--TTTTTCTGA-A-CT-GCAAAAC-CG-ACG-TTGC---------------------CAAGGGACTGGGCTTTATTCATACAAA--------AC-AG---A----TTCGT-C-TAG---TTTTCG-AG--TTT-TTACTCT-
gi|9 : ggtactgttgtcaacttcgtacagctattcaagatttcttaattcacaaaatttattgaaatatggtgtattttttcaATAT-CAACTGCCTTTGA---GCCTCTCTACCGAACTTTCTCTGACATCTCTCAAAAC-CATACTATTGC---------------------CA----------------------AAATTACAC--AC-AA---ACACCGTCGTAC-TTG---TTTTCGGACTAGTTATTACTCTTGATATTCA-----AAGAAATATTTTTA-ATTTGCAAT---ACTAC---TGTCAGAA--TAACTGTA--------------C--CAT--------------ACAATGGCATCGAAACA-CTATG---------------AAG-----TTCTGTTG---TCCCTTCTACGAGACTGTGTAACGTCACGT--ATAACC--TCGATA---TAGC----C--T--CGAACACCCGTTTA--GCTCGGA--C-TGTTTT-CAATGATCCCTT--Gtgattatttaaagaaatgttttaaatatatgccagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctttttattgtcccttcactcagactcgaacacccatctagctcgaact
gi|10 : tgatttttttttctcttagcctgttttttgcgttttttggagagagtttttcattgtctgccttgatgcactaccgtcattataaatgaatactgttagtatacccctttttcgttgaatttaattgcgatcgtgatctctgttggttcaccttcgaacagaccttacttcaagatttttaattcacaaaatttcatagaaactttgagtttttttaataaattataATAT-CAATTGCTA-TGAA-C-CCTGTC---CGA--CTTATCTGA-A-AT-TCAAAAC-CG-ACG-TTGCGGAGGGATGAAACTTTATTCACG----------------------CAA--------AA-AA---G----GTCGT-C-TAG---TTTTg
gi|5 : aaaagtactaagcacaagtataactttgtccatgtttttcgtgttaactcaacataatttctgcagattttcgatcacttaaatagattcgggaaaatatttgatacctggtggataatttcgggtattatattgtgtacatgtattcagtgagtgtttaaggttgttcacgtctcttgtgtgctcccgtcaattattgtcaaagttaacccatcttttcggtcgaggtttctgcgtccattgtcaacttcgaacagctactcaagatttcttaattctcaaaatttcatgaaacatgatttgtttgtttttcAAACCATTTTTGT-GT----CCTTCT-CAG-ATTG-GAAATGT-ACTTTAA---CTT--CGATAGCTCGAA---AC--A--CC--CTTTTG-------CTC-GA--ACTGTTTTTCAGTGG--CCTT--GCTTTGACTGTACACC---------------AATC-C-AC--AAGCTG-A-------TGT-GTGATGTAACCAACCCCC--CCCC---------------------TCTG-AAATTGAAAATTAACTGCGTG-TT-AATACT-T-TTCCG-AATTTACCTTCA-TCA-GACATCACTAGG
gi|27 : gaatgtcgcACTGTACACC---------------AATC-C-AC--AA-CTT-G-------TAT-GTGATGTAAC--ACCCCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaactcggtcctcccagaagctgacgttgaagcttttccggccgcaactttacattatgttctttccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaatttactgtggcaaaatttcagttaatattgtaatagtctatagcatgctacaaagaagatattcagtgtatttctttttattatgtttttgat
gi|17 : CAGGGG--GATCCATGAT------TTGTAATTGGGGGGGG---GAAAATTATCTGC-AGGGGTCTGGATCCAGCGAAGAAGACCTGTTGTAGGAGACG---GGTGGA---TGAGGCGAAGCCCC------------CCCCCCCCGGC--GAAGCTGACGGATTTTCAGTATTATTTAACTTTTCCAGTCGCAAACTGT---G-Act
gi|3 : gcTGTGAACCCGGCCTC--CCAGAAGCTGACG---TT---GAA-------GCTTTTCTGGCCGC-AACTGT---G-ATT----ATAAT-TGTA-----------CTTTCCGAATATTATGATCTCAGGATGATTT--TAANNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNNNNN----T-----TT-ACT-GTGGCAAA--AGTTCAGTTAATATAATGT-ACACTA---GTTTATAGC-ATGTT-AC-AA-AAGATATTCAGTGTA--TTTCTTTTTATTATGTTTT---GATT-TTGCA---ATACA--CATACA-CAGAGAGAGAGAGAGAGAG
gi|13 : atatcaattgccttgagccctctccgatttttctgaatttcaaatccgactttgccgaaataaggtcgcctagttttcgacgttttactctgaaatacactgtacatgtattttcagtttgaattagaatataatgtcagaaattcaatggaattttgaaggctcattggctcgaattgcaatggctcgaacactaaagttgcaattaaaccatttttgttgtcccttctcagattggaacgtactttaacttcgatagctcaaacaccttttgctcgaactgttttcaatggtcccttgctttgactgtacactaatccagttgaatcacaaattcgtgtgtgatgtacaccccaccccccccaaaccatggtatatctgaaattgaaaataactgcgtgtttaaatacctttttccgaatctaccttcatcagacacactaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGCCTC--CCAGAAGCTGACG---TT---G-A------AGCATTTCCGGGCGG-AACTTTTAAGCATTTTCCAA-ATGTGTACACTATGATT-CTTTCC-AA-ATA-TAATCTCAGGG-GA--T--TNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNNNNN----N--NNNTTTAC-AGTGACAAA--AGTCCAGTTCATAT--TGT-ACAC----TGTTAATA---ATGTACAC
gi|5 : CCTC--CCAGAAGCTGACG---TT---GAA-------GCTTTTCCGGCCGC-AACT--------TT----AC-AT-TATG---------TTCTTTCCNNN-NNN-NNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNTT--AAATTTACTG-TGGCAAAAT--TTCAGTTAATAT--TGTAATA------GTCTATAGC-ATGCT-ACAAAGAAGATATTCAGTGTA--TTTCTTTTTATTATGTTTTtagtctatagcatgttataaaaga
gi|16 : gaatgtcgcaaaccatttttgtgtccttctcagattggaaatgtactttaacttcgatagctcgaaacacccttttgctcgaactgtttttcagtggccttgctttgactgtacaccaatccacaagctgatgtgtgatgtaaccaaccccccccctctgaaattgaaaattaactgcgtgttaatacttttccgaatttaccttcatcagacatcactaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaactcggt---------T-CTTTCCGAATATTATGATCTGAGGATGATTT--TAATGT-TATAACGACGtgat
gi|7 : ttatgatTTACATAAAC-A-AAT--T-TGTCCAA-CCTTCCCAGGCCTT---CA-CC-AAA--GGATT-CCTTT-TT----G--T-TGTTTTTTTTAATAGCAATTT-GTTT-----ATTAA----TATAAAA-CA--TTACAAGTATTCTC-TA-GA-AGACT------GTACACGC-CAAAGT--TTATAT----------ACATGTACTTT-CCGTTCTT-ACACATG-ATCCAAGG-ATACAATGTCGTTT-AAGTATG-TG-TAACATGATTATGTACCGGTATCATGT-TTA-AACAAT-AACT-ATGGG-ATA-TTACGATA-TTCTGTGACA-ATGATCTG-AAAAAGACTTGCGACTTCTT-TCTTT-CTGTA-GGGTCCATAAT-GTTTCTCTGGTCCAATTTTTAAACCCCG-AAAAGTCCGTTGCTGAGCACGCTTAGTCTG--GAAACGCGC-AAAAAAACACGGATAGTCCGTCCCCAT-TCCACACCGTGAT-AACTAACAACAAAAACAAGAAAATGAGTTTCA-GTAT-ATATG-TTTAT--AAAT-CATGCTTGTGGTGCAGACAA-TATACAATACTCATCAAAAAGTTA-GCAGTCCAAATAATTATATTCCCtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaccgtggcaaaagttaatattgtacacataggtactacgcatgtagcaaaagttttcgattttgcaatacacagtacagacgag
gi|8 : TTACATAAAC-A-AAT--T-TGTCCAAACCTTCC-AGGCCTT---CA-CC-AAA--GGATT-CCTTT-TT----G--T-TGTTTTTTT-TATAGCAATTT-GTTT----TATTAA----TATAAA--CAATT-ACAAG-ATTCTC-TA-GA-AGACT------GTACACGCC--AAGT--TTATAT----------ACATGTACTTTC---TTCTT-ACACATGATTCAAAGG-ATACAATGTCGTTT-AAGTATG-TG-TAACA-GATTATGTACCG-TATCATGTGT-T-AACAATTA-CTTATGGG-ATA-TTACGATA-TTCTGTGACA-ATGATCTG-AAAAAGACTTGCGACT-CTTTTCTTT-CTGTA-GGGTCCATAAT-GTTTCTCTGGTCCAATTTTTAAACCCCG-AAAAGTCCGTTGCTGAGCACGCTTAGTCTG--GAAACGCGCAAAAAAAACACGGATAGTCCGTCCCCAT-TCCACACCGTGAT-AACTAACAACAAAAACAAGAAAATGAGTTTCA-GTATAATATGTTTTAT--AAATACTTGCTTGTGGTGCAGACAA-TATACAATACTCATCAAAAAGTTA-GCAGTCCAAATAATTATAT--CCTCctc
gi|21 : TTACATAAATGA-ATT--TG-GTCCAA-CTTCCT-AGGC-CTAGTCA-CC-AAA--GGATTACCTTTGTT----A--TTTGGTTTTTT-AATAA-AATTGTGTTT----ATTTAA----TATAAA--------ACGAGTATTCAC-T-AGA-AGACT------GTACACGCc
gi|14 : TGCATAA-CTA-A--GGT-TGTTAAA-CCTTCCCACGC-CA---AA-TC-AAA--GGATT-CCTTT-TTTATAGC-TATTTGTTTTT-AACAG--ATCTTATGGAAGATATTAGCCCTTGTA-------TTTGC--CCATTTTA-TGATAGGAATTCGTAATG-ACA--TCCGAGGT--TTAT-T----------AC-------TTTGTGTTC-TTACACAGG-ATCCAAGA-ATAAAATCTCTTTTAGAATA---AG-TAACATGA--ATGTG--GATGT--TGT-T-ACAACAAA-A-Ccatag
gi|15 : ACATAAAATACAAT----TGTC-AA-T-TCCC-AGGCCTT---CA-CCCAAA--GGATT-CCTTT-TT----TATTATTTTTTTTT-AATAGCAATTT-GTTT-----ATTAA----TTTAAA---------CAAGTATATTCATTAGA-AGACT------GTACACGC-CAAAGT--ATATAT----------ACATGTACTTT-CCATTCTT-ACACTTG-ATCCAAGG-ATACAATCT--------------------CATGATTATGTACCGGTATCATGT-TAA-AACAAT-A-gta
gi|22 : a-AATAATTTGCTCAA-TTTCCC-GGGC-CT---CATCC-AAAACGGATT-CCTTT-T-----------GTTTTTTT-A-CAGAAATTTTG-TT----AATTAAAT--TATAAAAac
gi|24 : gttacatc---CA-TC-AAA--GGATT-CTGTT-TT----G--T-TG--CTTTT-AATAGCAA-GTTG-TT----TACTGA----TATCAAcatagatttttatggaa
gi|18 : ctaaccctcatcctaacccaCAAGTATTCAC-TA-GA-AGACT------GTACACGC-CAACGTATTTATATGAAGATAATTACACGTACTTT-CCGTTCTT-ACACATG-ATCCAAGG-ACAAAATCTCGTTT-AAGTATA-TG-TAACATGATCATGTACCGGTATCATGT-TAA-AACAAT-A-ccat
gi|25 : TATACTT--CCGTTTCTTACACATG-ATCTAAGGAATACAAT-TCGTTT--AGTATACTGATAACATact
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): ATGGTCCGGCTACATATGCCATGTTTGTATAATAGTGACCATAATCCGTTTCATAAGGATGATTACGCTACAAGCACTCACTTCTGTGGCAAAATGACATTTGGACTACCAACATCGACTTACACTTCTTCGTCCCTTTCAGTTGTTCTGGTAGGGGCGGCTCTCCATAAAGTGGTGCTCCTTGGGTCCGATTTTTAAATCCCGTAATGCTTTGTAGGGCACCCGCCATTGAGCGTCTGGGGAACAAGCGGCAAAAAACA
Unaligned ( gi|19 ): ACATCTAGGGGCGGATTCAGGAATTCTGGTTTAGGGGCGGGAGTCCGAAGAACTTTATTATACTTAGATGGGCAGGGGTTGGAGGCCGCCTTAAACGTTAGTGTCCCCAGTGGTCCGTAAGGGCAGACACCCTGGTTG
Unaligned ( gi|20 ): TATTAAGCATTAAGCCCTTCATGTTGTGCTTTCTGGTGATTTTGTGTTTAACTTACATATACAGATGGTTACTTACATTAAAAAAGCTTCGTATTGCTTTTTTTGGATGTCAATTTGGTACATATTAGATAAT
Unaligned ( gi|23 ): TAATGATTTATACGATGTAACAAATTAACGAGTTAACAATCTTGTAAGTCCCAATCACAATAAAAATTTACATGTGGCAAAGTTCAGTTAATATTGTCCAGTCTAAGCA
Unaligned ( gi|26 ): TTATTGTGTTTTCATTTTGTAATATAACAAAAACACACACATACAGAGAGAGAGAGA
Unaligned ( gi|28 ): TACCATCCAGGGGCGGATCCAGGAATTCTGGTT
Alignments
lowQualScore : 1111 1 1111111 9999999999999999999999999999999999999999999999999999999999999999 111 11111111 111111 222 222222222 22 1 55555555555555555555555 3333 111 5555555 444444 111 22222222 222222222222 666666666666666666666666666666 1111 222222 1 1 1 1 1 11 222222222 2 22 2222222 888888888888 11111 11 22222 333333333333333333 11111 444444444444444444444 11 11 2222222 111 111 44444444444444444 111 11 111 111 3333333 2 11 1111111 1111 11111111 11 1 11 2222222222222 11 2 2222222222 111 1 1 1 1 1111 11 1 22222 1111 3333333 11111 1 1 1 3333333 33333 1 11 11 111 1111 11 1 1 1 1 1 2 2 11 2 1 1
lowQualScore : 5 6666 5 5 5 5 777 0 8888 55 5 5 5 6666666 2222222222222222222222222222222222222222222222222222222222222222 5 5 888 5 222 5 9999 3 88888888 6 555555 111 3 666666666 99 1 3 3 22 2 5 33333333333333333333333 0 1 1111 5 77 5 444 5 5 5 6666666 77 77 1 000000 222 44444444 5 5 5 77 999999999999 222222222222222222222222222222 5 0 7777 1 1 222222 0 8 1 0 3 3 0 3 99 0 0 0 22 66 4 6 6 222222222 1 3 6 00 7 6666666 0 999999999999 6 66666 77 1 33 0 7777 0 0 6 11111 6 99 99 444444444444444444 6 77777 777777777777777777777 9 0 0 0 99 6 33 4 2 6 7 6 0 00 7 77 4444444 888 555 11111111111111111 5 0 5 000 5 5 6 6 99 11 6 111 8 444 7777777 3 8 8 2 0 1 77 77 5 5 1 5 1111111 6666 5 5 66 5 5 88888888 0 66 11 5 9 3 3 66 11 7777777777777 0 5 55 5 77 77 3 99 9999999999 5 5 5 5 5 7 5 8 111 5 1 7 6 3 3 3 3 3 4444 33 0 55555 4444 2 3 3 2222222 88888 0 0 0 2222222 2 55555 7 0 3 2 33 33 777 4444 33 0 5 3 6 3 3 3 3 88 3 1 7 3 3 7
lowQualScore : . .... . . . . ... . .... .. . . . ....... ................................................................ . . ... . ... . .... . ........ . ...... ... . ......... .. . . . .. . . ....................... . . .... . .. . ... . . . ....... .. .. . ...... ... ........ . . . .. ............ .............................. . . .... . . ...... . . . . . . . . .. . . . .. .. . . . ......... . . . .. . ....... . ............ . ..... .. . .. . .... . . . ..... . .. .. .................. . ..... ..................... . . . . .. . .. . . . . . . .. . .. ....... ... ... ................. . . . ... . . . . .. .. . ... . ... ....... . . . . . . .. .. . . . . ....... .... . . .. . . ........ . .. .. . . . . .. .. ............. . . .. . .. .. . .. .......... . . . . . . . . ... . . . . . . . . . .... .. . ..... .... . . . ....... ..... . . . ....... . ..... . . . . .. .. ... .... .. . . . . . . . . .. . . . . . .
lowQualScore : 0 6666 0 0 0 0 888 0 0000 88 0 0 0 2222222 0000000000000000000000000000000000000000000000000000000000000000 0 0 888 7 111 7 0000 7 22222222 7 222222 777 2 000000000 22 0 2 2 22 5 5 00000000000000000000000 7 7 9999 7 11 7 333 7 7 7 4444444 99 99 0 333333 666 77777777 7 7 7 99 333333333333 333333333333333333333333333333 7 1 7777 0 0 222222 6 0 0 0 2 2 0 2 55 0 0 0 55 22 0 7 7 333333333 0 7 7 77 3 7777777 7 000000000000 7 77777 33 0 33 7 0000 7 7 7 00000 7 22 22 333333333333333333 7 77777 777777777777777777777 0 8 8 8 22 7 00 2 0 7 5 7 2 88 5 99 4444444 333 000 33333333333333333 7 7 7 000 7 7 7 7 22 00 7 777 0 000 0000000 8 0 0 5 0 0 11 99 7 7 4 0 9999999 6666 0 0 99 0 0 66666666 1 99 99 6 4 2 0 99 99 1111111111111 1 7 99 7 99 99 3 22 2222222222 7 7 7 7 7 9 7 4 999 7 0 8 7 0 3 3 3 2 8888 88 0 00000 8888 5 2 2 5555555 55555 0 0 0 5555555 5 00000 0 0 2 5 88 88 555 8888 88 0 5 3 7 3 3 7 7 33 7 0 3 3 3 3
consensus : ATAT-CAATTGC-C-TTG-AGC-C-CTCT-CCGA--TTTTTCTGA-A--T-TTCAAAA-C-CG-ACT-TTGC-------CGAA----------------A---T-----A--------C----------A-----AG----G-----TCGC-CT-AGTTTT---C-GAC--GTT-TTACTCTTGANTACACTNATAGNATGTATTTTCA-GTTTGAAATTAGAATATAAATGTCAGAAATTCAATGGAATTTTG--A-GGCT--CATTGGCTCGAAA-TTGCAATGGCTCGAAACACCTATGAA-G-TCGCA--ATTAA-ACCATTTTTGTTG--TTCCCTTCT-CG-G-ACTG-G-AA-CGT-ACTT-TAA---CCT-TCG--ATA--GCTC---A--CACC-C-TTTG------GCTCGAACTGT-TT-T-CAATGGTCCCTT--GCTTTGACTGTACACC------------AATCCA-------C--A--C------TCG-------TGTG-TGATGTAAC--ACCCCCNCCCCCC----C-AAACCAT-GGTATATCTGAAA-TTGAAAATTAACTGCGTG-TTAAATACCTTTTTCCG-AATCTACCTTCA-TCA-GACA-CACTAGGNGGCAGGGGCGGATCCATGATAGAACTTTGTG-TTGGGGGGGG-ACGAAAATT-CCGGT-AAGGGTCT----------GAGAAGACC-GGCTTAGAAGTCGCCCGGCGGGGTCCGGGGCGGAGCCCC-GGT-TGTGAACCCGG-CCTC--CCA--GAAGCTGACG----TTGAA--------AGCTTTTCCGGCCGC-AACTGT---G-ATTAT---AAT-TGTA---------TCTTTCCGAATATTATGATCTCAGGATGATTT--TAATGT-TATAACGATGGTAGGCAAAGANT-ATGAAGCAGTT-TGTCGATGCCTTTTTATAGTTC--AATAGA---T--AAATTTACTGGTGGCAAA--AGTTCAGTTAATA--------------TAATGT-ACAC-TA---GTCTATA-GC-ATGTT-AC-AAA--AGATATTCAGTGTA--TTTCTTTTTATTATG-TTTT---GATT-TTGCA---ATACA-------CATACA-CAGA-GAGAGAGAGAGAGAGACGAGAGATTACATAAACTAAAT--T-T-GTCCAA-CC----T-CCCAGGCCT--TCA-CC-AAA--GGATT-CCTTT-TT----G-T-TGTTT--TTTT--AATAGCAATTTTGTTTNATTAA--TAT--AAA-C------A-TTTACAAGTATTCTC-TAAGA-AGACT--GTAC--ACGCC-AAAGT--TTATAT----------ACATGTAC-TTTCCGTT-C-TTACACATGATCCAA-GG-ATACAATNTCGT-TTAAGTAT-G-TG-TAACATGATTATGTACCGGTATCATGTTAAAACAAT-ACNTAT-GGGATA-TTACGAT-ATTCTGTGACA-A--TGA--TCTG-AA-----AA-A--GACTTGCGACTTCTT-------TTC---T-TT-CTG-TA-GGG-------TCCATAA-----TGTTTCTCTGGTCCGATTTTTAAAC-CCCGAAAAGTCCGTTGCTGAGCA--CGC--TTA---GTC--T-GGAAAC--GC-GCAAAAAAAACACGGATAGTCCGTCCCCAT-TCCACACCGTGAT-AACTAACAACAAAAACAAGAAAATGAGTTTCA-GTAT-ATATG-TTTAT--AAAT-CATGCTTGTGGTGCAGACAA-TATACAATACTCATCAAAAAGTTA-GCAGTCCAAATAATTATATTCCCTC
Reference ( family-783 ) : ATAT-CAATTGC-C-TTG-AGC-C-CTCT-CCGA--TTTTTCTGA-A--T-TTCAAAA-C-CG-ACT-TTGC-------CGAA----------------A---T-----A--------T----------A-----AG----G-----TCGC-CT-AGTTTT---C-GAC--GTT-TTACTCTGGAATACACTNATAGNATGTATTTTTA-GTTTGAAATTAGAATATAAATGTCAGAAATTCAATGGAATTTTG--A-GGCT--CATTGGCTCGAAA-TTGCAATGGCTCGAAACACCTATGAA-G-TCGCA--ATTAAGACCATTTTTGTTG--TTCCCTTCT-CG-G-ACTG-G-AA-CGT-ACTT-TAA--ACTT-TCG--ATA--GCNC---A--CACC-T-TTTG------GCTCGAACTGT-TT-T-CAATGGTCCCTT--GCTTTGACTGTACACC------------AATCCA-------C--A--C------TTG-------TGTG-TGATGTAAC--ACCCCCNCCCCCC----C-AAACCAT-GGTATATCTGAAA-TTGAAAATTAACTGCGTG-TTAAATACCTTTTTCCG-AATCTACCTTCA-TCA-GACA-CACTAGGAGGCAGGGGCGGATCCATGATAAAATTTNGTGATTGGGGGGGG-ACGAAAATTACCGGCGAGGGGTCTGGATCCAGCGNAGAAGACCTGNCGTAGGAGNCGCCCGGCGGGGTCCGGGGCGGAGCCCCTGGT-TGTGAACCCGG-CCTC--CCA--GAAGCTGACG----TTGAA--------AGCTTTTCCGGCCGC-AACTGT---G-ATTAT---AAT-TGTA---------TCTTTCCGAATATTATGATCTCAGGATGATTT--TAATGT-TATAACGACGGTAGGCAAAGATT-ATGAANCAGTT-TGTCAATNNCTTTTTANAGTTC--AATAGA---T--AAATTTACTGGTGGCAAA--AGTTCAGTTAATA--------------TAATGT-ACAC-TA---GTTTATA-GC-ATGTT-AC-AAA--AGATATTCAGTGTA--TTTCTTTTTATTATG-TTTT---GATT-TTGCA---ATACA-------CATACA-CAGA-GAGAGAGAGAGAGAGA-GAGAGNTTACATAAACTAAAT--T-T-GTCCAA-CC----T-CCCAGGCCC--TCA-CC-AAA--GGATT-CCTTT-TT----G-T-TGTTT--TTTT--AATAGCAATTTTGTTTTATTAA--TAT--AAA-C------A-TTTACAAGTATTCTC-TAAGA-AGACT--GTAC--ACGCCCAAAGT--TTATAT----------ACATGTAC-TTTCCGTT-C-TTACACATGATCCAA-GG-ATACAATCTCGT-TTAAGTAT-G-TG-TAACATGATTATGTACCGGTATCATGTTAAAACAAT-ACTTAT-GGGATA-TTACGAT-ATTCTGTGACA-A--TGA--TCTG-AA-----AA-A--GACTTGCGACTTCTT-------TTC---T-TT-CTG-TA-GGG-------TCCATAA-----TGTTTCTCTGGTCCAATTTTTAAAC-CCCGAAAAGTCCGTTGCTGAGCA--CGC--TTA---GTC--T-GGAAAC--GC-GCAAAAAAAACACGGATAGTCCGTCCCCAT-TCCACACCGTGAT-AACTAACAACAAAAACAAGAAAATGAGTTTCA-GTATAATATGTTTTAT--AAATACNTGCTTGTGGTGCAGACAA-TATACAATACTCATCAAAAAGTTA-GCAGTCCAAATAATTATATTCCCTC
gi|1 : ATAT-CAATTGC----TGAAGCGC-CTCT-CCGA--TTTTTCTGA-A--TCTTCAAAT-C-CG-ACT-TTGC-------CGAA----------------A---------A--------T----------A-----AG----G-----TCGC-CT-AGTTTT---C-GAC--GTT-TTACTCTGAAATACACTGGTAGCATGTATTTTCA-GTTTGAAATTAGAATAGAAATGTCAGAAATTCAATGGAATTTTG--A--GCT--CATTGGCTCG--A-TTGCAATGGCTCGACACACCTATGAT-G-TTGCATTATTAAGACCATTTTTGTTGTTTTCCCTTCT-CA-GTATTG-GAAA-CGT-ACTT-TAAGGACTTGTCG--ATACGGCGC---A--CGAC-T-TTTGTGTGGCGCTCGACGTGT-TT-T-CAATGGTCCCTT--GCTTTGACTGTACACCGAATGTTCCGTGAATCCA-------C--A--C------TTG-------TGTG-TGATGTAAC--ACCCCCGCCCCCC----C-AAGCCCT-GGTATATCTGAAA-TTGAAAATT-ACTGCGTG-TTAAATACTGTGTTCCGAAATCTACCTTCAGTCAGGACA--ACTCGGTGGCAGGGGCGGATCCATAATAGAACTTTGTG-TTGGGGGGGGAACGAAAATT-CCGGT-AAGGGTC-----------GAGAAGACCGGGCTTAGAAGTCGCCCAGCGGGGTCCAGGGCAGAGCGCCGGGTGTGTGAATCCCG-CCTCGGCCA--GAAGCTGACGGGT-TTGAA--------AGCTTTTCTGGCCGC-AACTGT---G-ATTAT----AT-TGTA---------TCTTTCCGAA-ATT-TGATCTCAGGATGATTT--TAATGTGTATGACGATGGTAGGCAAAGAAT-ATGAAGCAGTT-TGTCGATGCTTTTTTATAGTTC--AATAGA---T--AAATTGACTGGTGGCAAAGTGGTCCAGTTGATA--------------GAATGTAACAC-TAGGTGTTAATA-GCGATGTTCACAAAA--AGATATTCAGTGTAATTTTCTTTTTATTATG-TTTTGCGGATTGTTGCAAATATGCATG-----CATACAGCAGA-GA-AGAGA-AGAGAGACGAGAGATTACATAAACCAAATGGTGT-GTCCAA-CC----T-TCCAGG-CT--TCA-CC-GAA--GGATT-CCTTT-TT----G-TGTGTTT--TTTT--AATAGCAATTTTGTTTTATTAA--TATAAAAA-C------AGTTTACAAGTATTCTC-TAAGAGAGACT--G-AC--ACGCTCAAAGT--TTATAT----------ACATGTACTTTTCCGTT-CTTTACACATGTTCCAA-GG-ATACAATGTCGTGTGAAGTATGG-TG-TAACATGATTATGTACCGGTATCATGTT-AAACAAT-AC-TATGGGGATAGTTACGATAATTCTG-GACAGA--TGA--TCTGTAA-----AA-A--GAATTGCGACTTCTT-------CTC---T-TTGCTG-TACGGG-------T-CATAAT----TGTTTCTCTGTTCC-ATTTTTAAACGCCGGAAAAGTCCGTTGCTGAG-A--CGC--TTA---GTCTGT-GAAAAC--GC-GC-AAAAAAACACGGATAGTCCGTCCCCATCTCCA-ACCGTGATAAACTAACAACAAAAACAAGAAAATGAGTTTCAGGTAT-ATATG-TTTATGAAAAT-CATGCTTGTGGTGC-GACAAGTATACAATACTCATCAAAAAGTTAGGAAGTCCAAATAATTATATTCCCTC
gi|10 : ATAT-CAATTGC-T-ATG-AAC-C-CTGT-CCGA--CTTATCTGA-A--A-TTCAAAA-C-CG-ACG-TTGCGGAGGGATGAA----------------ACTTT-----A--------TTCACGCAAAAA-----AG----G-----TCGT-CT-AGTTTT---
gi|11 : aaaagtactaagcacaagtataactttgtccatgtttttcgtgttaactcaacataatttctgcagattttcgatcacttaaatagattcgggaaaatatttgatacctggtggataatttcgggtattatattgtgtacatgtattcagtgagtgtttaaggttgttcacgtctcttgtgtgctcccgtcaattattgtcaaagttaacccatcttttcggtcgaggtttctgcgtccattgtcaacttcgaacagctactcaagatttcttaattctcaaaatttcatgaaacatgatttgtttgtttttcATAT-CAATTGC----TG-AGT-C-CTGT-CCGA--TTTTTCTGA-A--C-TGCAAAA-C-CG-ACG-TTGC-------CAAGGGACTGGGCTTTATTCA---T-----A--------C----------A-----AA----ACAGATTCGT-CT-AGTTTT---C-GAG--TTT-TTACTCTTGATTA
gi|12 : ggtactgttgtcaacttcgtacagctattcaagatttcttaattcacaaaatttattgaaatatggtgtattttttcaTTCTGTGGCA-AAATGACATTTG-GACTACCAACATCGACTTAC-ACTTCTTCGTCCCTTTCAGTTGTT-CTGGTA-GGGGCGGCTCTCCATAAAGTGGTGCTCCTTGGGTCCGATTTTTAAAT-CCCGTAA--TGCTTTGTAGGGCACCCGCCATTGAGCGTC--TGGGGAACAAGCGGCAAAAAAtttaaagaaatgttttaaatatatgccagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctttttattgtcccttcactcagactcgaacacccatctagctcgaact
gi|13 : atggtccggctacatatgccatgtttgtataatagtgaccataatccgtttcataaggatgattacgctacaagcactcacG-CCTC--CCA--GAAGCTGACG----TTG-A--------AGCATTTCCGGGCGG-AACTTTTAAGCATTTTCCAAATGTGTACACTATGATTCTTTCCAAA---TATAATCTCAGGG-GA-TT--NNNNNN-NNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNNNNN---N--NNNTTTAC-AGTGACAAA--AGTCCAGTTCATATTGTACACTGTTAATAATGT-ACAC-TA---GTCTATA-GC-ATGTT-AT-AAA--AGAca
gi|14 : TGCATAA-CTAAGG--T-T-GTTAAA-CC----TTCCCACGCCA---AA-TC-AAA--GGATT-CCTTT-TTTATAG-C-TATTTGTTTTT--AACAG--ATCTTATGGAA--GA--TAT--TAG-CCCTTGTA-TTTGCC--CATTTTA-TGATA-GGAATTCGTAATGACATCCGAGGT--TTAT-----------------TAC-TTTGTGTT-C-TTACACAGGATCCAA-GA-ATAAAATCTCTT-TT-AGAAT-A-AG-TAACATGA--ATGTG--GATGT--TGTTACAACAAA-ACGTA
gi|15 : ACATAAAATACAA--T-T-GTC-AA-T-----T-CCCAGGCCT--TCA-CCCAAA--GGATT-CCTTT-TTT---A-T-TATTT--TTTTTTAATAGCAATTT-GTTT-ATTAA--TTT--AAA-C------A-------AGTATATTCATTAGA-AGACT--GTAC--ACGCC-AAAGT--ATATAT----------ACATGTAC-TTTCCATT-C-TTACACTTGATCCAA-GG-ATACAATCT---------------------CATGATTATGTACCGGTATCATGTTAAAACAAT-A
gi|16 : aTTAT---GAT-T-------------CTTTCCGAATATTATGATCTGAGGATGATTT--TAATGT-TATAACGAC-GT-----NNNNNN-NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNNNNN---N--NNNNTTACC-GTGGCAAA-------AGTTAATA--------------T--TGT-ACACATA---GGTACTACGC-ATGTA-GC-AAA--AG--------------TTT---------------TC---GATT-TTGCA---ATACA-------CA-GTA-CAGACGAGac
gi|17 : CAGGGG--GATCCATGAT------TTGTAATTGGGGGGGG---GAAAATTATCTGC-AGGGGTCTGGATCCAGCGAAGAAGACCTGTTGTAGGAGACG---GGTGGA---TGAGGCGAAGCCCC-----------CC----CCCC--CCGGCGAAGCTGACGGATTTTCAGTATTATTTAACTTTTCCAGTCGCAAACTGT---G-A
gi|18 : gcCAAGTATTCAC-TA-GA-AGACT--GTAC--ACGCC-AACGTATTTATATGAAGATAATTACACGTAC-TTTCCGTT-C-TTACACATGATCCAA-GG-ACAAAATCTCGT-TTAAGTAT-A-TG-TAACATGATCATGTACCGGTATCATGTTAAAACAAT-A
gi|2 : ATAT-CACATGCGC-CTG-AGC-C-CTCT-CCGA--TTTTTCTGACA--T-TTCAAAT-C-CG-ACT-TTGC-------CGAA----------------A---T-----A-------------------------AG----G-----TCGC-CTTAGTTTTTTTC-GAC--GTT-TTACTCTG-AATACACGTGTA-CATGTATTTTCATGTTTGA--TTAGAATATAAATG-CAGAAATTCAATGGAATTTTGCCA-GGCT--CATTGGCTCGAA--TTGCAATGCATCGAA-CAC-TATGAA-GATTGCA--ATTAA-ACCATTTTTGTTG--T-CCCTTCT-CA-G-ATTG---AA-CGT-ACTT-TAA---CTT-CCG--ATA--GCTC---AAACACC-T-CTTG-------CTCGAACTGT-TT-T-CAATGGTCCCTT--GCTTTGACT--ACACC------------AATCCAGTGAAT-C--A--CAACAATTCG-------TGTGGTGATGTA-C--AGCCCCACCCCCC----CCAAACCAT-GGTATATCTGAAAATTGAAAATTAACTGCGTG-TTAAATACCTTTTTCCG-AATCTACCTTCA-TCA-GACA-CAT----AGGCAGGGGCGGAT-CA----AAAATTTGGTG-TT--GGGGGG-ACG-AAATT-CTGGTGAAGGGTCT-----------AGAA-ACC--GCTTA-AAGTC-CCCAGC--GGTCCAGGGCAGAG-CCCTGGT-TGTGAACCCGG-CCTC--CCA--GAAGCTGACG----TTG-A--------AGCTTTTCTGGCCGC-AACTGT---G-ATTAT---AAT-TGTA----------CTTTCCGAATATTATGATCTCAGGATGATTTTGTAATGT-TATAACGAT-GTAGGCAAAGATTAATGAA-CAGTTGTGTCAAT--CTTTTTA-AGTTCCAAATAGA---TAAAAATTTACT-GTGGCAAA--AGTTCAGTTAATA--------------TAATGT-ACAC-TA---GTTTATA-GC-ATGTT-AC-AAA--AGATATTCAGTGTA--TTTCTTTTTATTATG-TTTT---GA-T-TTGCA---ATACA-------CATACA-CAGA-GAGAGAGAGAGAGAGA-Gact
gi|21 : TTACATAAA-TGAAT--T-TGGTCCAA-CT----T-CCTAGGCCTAGTCA-CC-AAA--GGATTACCTTTGTT----ATT-TGGTT--TTTT--AATAA-AATTGTGTTTATTTAA--TAT--AAA-------------ACGAGTATTCAC-T-AGA-AGACT--GTAC--ACGCC
gi|22 : TTACATCAAT--AAT--T-T-GCTCAA-TT----T-CCCGGGCC---TCATCC-AAAACGGATT-CCTTT-T----------GTTT--TTTT--A-CAGAAATTTTG-TTAATTAAATTATA-AAA-C------A-Tatag
gi|23 : gC--AATAAA-------AATTTACATGTGGCAAA---GTTCAGTTAATA--------------T--TGT----C-CA---GTCTA-A-GC-Aagatttttatggaa
gi|24 : taatgatttatacgatgtaacaaattaacgagttaacaatcttgtaagtcccaatcaCTAA-CCCTCAT-CCTAA-CCC--ACA-TC-AAA--GGATT-CTGTT-TT----G-T-TG--C--TTTT--AATAGCAA-GTTG-TTTACTGA--TAT--CAA-C------
gi|25 : TATAC-TT-CCGTTTC-TTACACATGATCTAA-GGAATACAAT-TCGT-TT-AGTAT-ACTGATAACATcat
gi|26 : agttTTATTGTG-TTTT---CATT-TTGTA---ATATAACAAAAACACACA-CATA-CAGAGAGAGAGAGA
gi|27 : ACTGTACACC------------AATCCA-------C--AA-C------TTG-------TATG-TGATGTAAC--ACCCCC
gi|3 : ATAT-CAATTGC-C-TTG-AGC-C-CTCT-CCGA--TTTTTCTGA-A--T-TTCAAAT-C-CG-ACT-TTGC-------CGAA----------------A---T-----A-------------------------AG----G-----TCGC-CT-AGTTTT---C-GAC--GTT-TTACTCTGAAATACACTG-TA-CATGTATTTTCA-GTTTGAA-TTAGAATATAA-TGTCAGAAATTCAATGGAATTTTG--AAGGCT--CATTGGCTCGAA--TTGCAATGGCTCGAA-CAC---TAAA-G-TTGCA--ATTAA-ACCATTTTTGTTG--T-CCCTTCT-CA-G-ATTG-G-AA-CGT-ACTT-TAA----CT-TCG--ATA--GCTC---AAACACC-T-TTTG-------CTCGAACTGT-TT-T-CAATGGTCCCTT--GCTTTGACTGTACACT------------AATCCAGTTGAATC--A--CAAAT--TCG-------TGTG-TGATGTA-C--ACCCCACCCCCCC----C-AAACCAT-GGTATATCTGAAA-TTGAAAA-TAACTGCGTGTTTAAATACCTTTTTCCG-AATCTACCTTCA-TCA-GACA-CACTAGGct
gi|3 : -TGTGAACCCGG-CCTC--CCA--GAAGCTGACG----TTGAA---------GCTTTTCTGGCCGC-AACTGT---G-ATTAT---AAT-TGTA----------CTTTCCGAATATTATGATCTCAGGATGATTT--TAANNN-NNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNNNNN---N-----TTTACTG-TGGCAAA--AGTTCAGTTAATA--------------TAATGT-ACAC-TA---GTTTATA-GC-ATGTT-AC-AAA--AGATATTCAGTGTA--TTTCTTTTTATTATG-TTTT---GATT-TTGCA---ATACA-------CATACA-CAGA-GAGAGAGAGAGAGAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtgaacccggcctcccagaagctgacgttgaagcttttctggccgcaactgtgattataattgtactttccgaatattatgatctcaggatgattttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttactgtggcaaaagttcagttaatataatgtacactagtttatagcatgttacaaaagatattcagtgtatttctttttattatgttttgattttgcaatacacatacacagagagagagagagagag
gi|4 : atatcaattgccttgagccctctccgatttttctgaatttcaaatccgactttgccgaaataaggtcgcctagttttcgacgttttactctgaaatacactgtacatgtattttcagtttgaattagaatataatgtcagaaattcaatggaattttgaaggctcattggctcgaattgcaatggctcgaacactaaagttgcaattaaaccatttttgttgtcccttctcagattggaacgtactttaacttcgatagctcaaacaccttttgctcgaactgttttcaatggtcccttgctttgactgtacactaatccagttgaatcacaaattcgtgtgtgatgtacaccccaccccccccaaaccatggtatatctgaaattgaaaataactgcgtgtttaaatacctttttccgaatctaccttcatcagacacactaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAT-CAATTGC-C-TTG-AGC-C-CTCT-CCGT--CTTTTCTGA-A--T-TCCAAAA-C-TG-ACT-TTGC-------CGAA----------------A---T-----A--------C----------ATAAAAAG----G-----TCGC-CT-AGTTTT---C-GAG--GTT-AAACTTTTGACTAT--TTAAAGAA-ATATTTTTA-ATTTGAA---------TA--TGTCAGAAATACAATGGAATTTCG--ATGGCT--CATTAGCTCGAA--TTGCAATGGCTCGAA-CAC-TATGAGTG-TCGCA--A-----ACCATTTT-GTTG--T-CCCTTGT-CG-G-ACTG-G-AA-CGT-ACTA-TAAC-A----TCG--ATA--GTTCGA-A--TACC-C-TCTA------TCTCGAACTGT-TT-T-CAATGGTCCCTT--GGTTTGACTGTACACC------------ATTCCA-------CA-A--C------TTG-------TATG-TGATG------ACCCCCCCCCCCC----
gi|5 : tattaaggattaacctttgtctatgttttacggtgaattcgtgttaactttacttaatttctgcagatttgattcacattaaaaagctttgcaattgttttgaatgtcaattttgtacgtagccgataatttggggtataattcttttgtattcagtggggtgtgtggtttttttttttggtttttttttcttttgatttttaggtagagttttttcacgtccctgacgcactgtcgtcaattacaatgtactagtataataatatataaagttacccactcttttcgttgaattgttttgtgcgtccgttgttaacttcgaacagctattcaagaatttttaattcgcaatatttcatgaaactttgtgtatttttatGAATG-TCGCA--A-----ACCATTTTTGT-G--T--CCTTCT-CA-G-ATTG-G-AAATGT-ACTT-TAA----CT-TCG--ATA--GCTCGAAA--CACC-C-TTTT------GCTCGAACTGT-TT-TTCAGTGG--CCTT--GCTTTGACTGTACACC------------AATCCA-------C--AAGC------TGA-------TGTG-TGATGTAACCAACCCCCCCCC-----------------------TCTGAAA-TTGAAAATTAACTGCGTG-TT-AATAC--TTTTCCG-AATTTACCTTCA-TCA-GACATCACTAGG
gi|5 : AACTCGGTCCTC--CCA--GAAGCTGACG----TTGAA---------GCTTTTCCGGCCGC-AACTTT---ACATTAT--------GT----------TCTTTCCNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNN-NNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNTT--AAATTTACTG-TGGCAAA--ATTTCAGTTAATA--------------T--TGT-A-A--TA---GTCTATA-GC-ATGCT-AC-AAAGAAGATATTCAGTGTA--TTTCTTTTTATTATGTTTTT---GATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaactcggtcctcccagaagctgacgttgaagcttttccggccgcaactttacattatgttctttccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaatttactgtggcaaaatttcagttaatattgtaatagtctatagcatgctacaaagaagatattcagtgtatttctttttattatgtttttgat
gi|6 : gaatgtcgcaaaccatttttgtgtccttctcagattggaaatgtactttaacttcgatagctcgaaacacccttttgctcgaactgtttttcagtggccttgctttgactgtacaccaatccacaagctgatgtgtgatgtaaccaaccccccccctctgaaattgaaaattaactgcgtgttaatacttttccgaatttaccttcatcagacatcactaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaATATTCAAT-GC-C-TTG-AGC-C-CTCT--CGA---TTTTCTCA-A--T-TTCAAAAGCACG-ACT-TTGC-------CGAA----------------A---T-----ACACACAATT----------A-----AG----G-----TTGC-TT-AGTTTT---T-GA---GTT-TT-CTCTTGACTA-ATTAA-AGAA---ATTATTG-GTTCG-AATTTGAATAT--ATGTCAGAAATACAAT----T--------GGCTCACATTA---CAAAATTTGCAATGTCTCGTAACACTT-------------------AGAC---TTGAGTTG---TCTATTCT-CA-G-ACTG-G-AA-CGT-ACCA-TAA--CC---TCG--ATA--GCTCT--A--CACCAA-TTTA------GCTCGAACTGTGTTGT-CAATGGTCACTTAGGC-TTGACTGTACACC------------AATCCA-------CAAA--C------TTGTGTGTAATGTG-TGATGCAACCAGCCACCACCCTCCATTTA-AAACCATGGGTTTATCAGAA
gi|7 : ggttagagtttttccacgtccctggtgtactccctcaattactaaacacagttgtttaagttaccccctcttttcgttgaaataatttgtgcgtccgtttgtcaacttcgagcagcatttactcaaaatcttttaattcacgaaaatggctgatattttgagtatttttgtatatttatTTACATAAAC-AAAT--T-T-GTCCAA-CC----TTCCCAGGCCT--TCA-CC-AAA--GGATT-CCTTT-TT----G-T-TGTTT--TTTTT-AATAGCAATTT-GTTT-ATTAA--TAT--AAAAC------A-TT-ACAAGTATTCTC-TA-GA-AGACT--GTAC--ACGCC-AAAGT--TTATAT----------ACATGTAC-TTTCCGTT-C-TTACACATGATCCAA-GG-ATACAATGTCGT-TTAAGTAT-G-TG-TAACATGATTATGTACCGGTATCATGTTTAAACAAT-AACTAT-GGGATA-TTACGAT-ATTCTGTGACA-A--TGA--TCTG-AA-----AA-A--GACTTGCGACTTC-T-------TTC---T-TT-CTG-TA-GGG-------TCCATAA-----TGTTTCTCTGGTCCAATTTTTAAAC-CCCGAAAAGTCCGTTGCTGAGCA--CGC--TTA---GTC--T-GGAAAC--GC-GC-AAAAAAACACGGATAGTCCGTCCCCAT-TCCACACCGTGAT-AACTAACAACAAAAACAAGAAAATGAGTTTCA-GTAT-ATATG-TTTAT--AAAT-CATGCTTGTGGTGCAGACAA-TATACAATACTCATCAAAAAGTTA-GCAGTCCAAATAATTATATTCCC
gi|8 : TTACATAAAC-AAAT--T-T-GTCCAAACC----T-TCCAGGCCT--TCA-CC-AAA--GGATT-CCTTT-TT----G-T-TGTTT--TTTT--TATAGCAATTT-GTTTTATTAA--TAT--AAA-C------A-ATTACAAG-ATTCTC-TA-GA-AGACT--GTAC--ACGCC--AAGT--TTATAT----------ACATGTAC-TTTC--TT-C-TTACACATGATTCAAAGG-ATACAATGTCGT-TTAAGTAT-G-TG-TAACA-GATTATGTACCG-TATCATGTGTTAACAATTACTTAT-GGGATA-TTACGAT-ATTCTGTGACA-A--TGA--TCTG-AA-----AA-A--GACTTGCGACT-CTT-------TTC---T-TT-CTG-TA-GGG-------TCCATAA-----TGTTTCTCTGGTCCAATTTTTAAAC-CCCGAAAAGTCCGTTGCTGAGCA--CGC--TTA---GTC--T-GGAAAC--GC-GCAAAAAAAACACGGATAGTCCGTCCCCAT-TCCACACCGTGAT-AACTAACAACAAAAACAAGAAAATGAGTTTCA-GTATAATATGTTTTAT--AAATACTTGCTTGTGGTGCAGACAA-TATACAATACTCATCAAAAAGTTA-GCAGTCCAAATAATTATAT--CCTCctc
gi|9 : ATAT-CAACTGC-CTTTG-AGC-CTCTCTACCGAACTTTCTCTGACATCT-CTCAAAA-C-CATACTATTGC-------CAAA----------------A---TTACACA--------C----------A-----AACACCG-----TCGTACT-TGTTTT---CGGACTAGTTATTACTCTTG---ATATTCAAAGAA-ATATTTTTA-ATTTGCAAT---ACTAC---TGTCAGAA--TAACTGTA-------------C--CAT--AC----AA-TGGCA-----TCGAAACA-CTATGAA-G-------------------TTCTGTTG---TCCCTTCTACGAG-ACTGTGTAA-CGTCACGTATAA--CC---TCGATATA--GCCTCGAA--CACC-CGTTTA------GCTCGGACTGT-TT-T-CAATGATCCCTT--Gc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): ACATCTAGGGGCGGATTCAGGAATTCTGGTTTAGGGGCGGGAGTCCGAAGAACTTTATTATACTTAGATGGGCAGGGGTTGGAGGCCGCCTTAAACGTTAGTGTCCCCAGTGGTCCGTAAGGGCAGACACCCTGGTTG
Unaligned ( gi|20 ): TATTAAGCATTAAGCCCTTCATGTTGTGCTTTCTGGTGATTTTGTGTTTAACTTACATATACAGATGGTTACTTACATTAAAAAAGCTTCGTATTGCTTTTTTTGGATGTCAATTTGGTACATATTAGATAAT
Unaligned ( gi|28 ): TACCATCCAGGGGCGGATCCAGGAATTCTGGTT
Alignments
lowQualScore : 1111 1 1111111 9999999999999999999999999999999999999999 1111111111 111 22222222222222 222222222222222 22222222222 1111 333333333333333333333333 3333 111 111 333 333 1 2222222 222222222222 666666666666666666666666666666 1111 222222 1 1 1 1 1 11 111 11111111111 11111 1 1 555555555555 111111 11 22 1 11111111111 2222 333333333 11111 1111 44444444444 1 222222222 22 111 4444444444444444 111 11 111 111 3333333 11 1 111 11111111 11 1 11 2222222222222 11 1111 2222222222 111 1 1 1 1 1111 11 1 22222 1111 3333333 11111 1 1 1 3333333 33333 1 1 11 11 111 1111 11 1 1 1 1 1 1 1 11 1 1 1
lowQualScore : 5 6666 5 5 5 5 777 0 8888 55 5 5 5 6666666 2222222222222222222222222222222222222222 5555555555 5 5 888 5 222 5 4 1 11111111111111 0 5 0 222222222222222 0 5 1 11 55555555555 77 1 2 7777 2 3 6 666666666666666666666666 66 1111 66 5 77 5 111 5 5 5 000 000 77 77 5 111 1 777 4444444 5 5 5 77 999999999999 666666666666666666666666666666 5 0 7777 1 1 222222 0 8 1 0 3 3 0 3 99 0 0 0 22 2 888 5 77777777777 66666 5 0 0 444444444444 5 444444 5 00 0 00 0 0 0 22 88888888888 99 99 5555 999999999 6 77777 7777 6 11111111111 0 55 0 99 6 2 4 1 6 5 6 77 5 77 444444444 11 555 6666666666666666 5 0 5 555 5 0 5 6 6 99 11 6 111 8 444 7777777 3 8 8 2 77 77 5 5 0 5 1 1 222 5 5 66 5 5 88888888 0 66 11 5 9 5 66 11 7777777777777 0 5 55 5 77 2222 5 3 99 9999999999 5 5 5 5 5 6 5 8 111 5 1 7 6 0 3 3 3 3 4444 33 0 55555 4444 2 3 3 2222222 88888 0 0 0 2222222 2 55555 0 0 3 2 33 33 777 4444 33 0 5 3 6 3 3 3 3 88 3 7 3 3 7
lowQualScore : . .... . . . . ... . .... .. . . . ....... ........................................ .......... . . ... . ... . . . .............. . . . ............... . . . .. ........... .. . . .... . . . ........................ .. .... .. . .. . ... . . . ... ... .. .. . ... . ... ....... . . . .. ............ .............................. . . .... . . ...... . . . . . . . . .. . . . .. . ... . ........... ..... . . . ............ . ...... . .. . .. . . . .. ........... .. .. .... ......... . ..... .... . ........... . .. . .. . . . . . . . .. . .. ......... .. ... ................ . . . ... . . . . . .. .. . ... . ... ....... . . . . .. .. . . . . . . ... . . .. . . ........ . .. .. . . . .. .. ............. . . .. . .. .... . . .. .......... . . . . . . . . ... . . . . . . . . . .... .. . ..... .... . . . ....... ..... . . . ....... . ..... . . . . .. .. ... .... .. . . . . . . . . .. . . . . .
lowQualScore : 0 6666 0 0 0 0 888 0 0000 88 0 0 0 2222222 4444444444444444444444444444444444444444 1111111111 0 0 888 7 111 7 9 0 33333333333333 4 7 1 777777777777777 1 0 9 44 99999999999 99 0 9 9999 3 1 4 777777777777777777777777 22 8888 99 0 00 0 222 0 7 7 000 111 99 99 7 444 4 333 0000000 7 7 7 99 333333333333 333333333333333333333333333333 7 1 7777 0 0 222222 6 0 0 0 2 2 0 2 55 0 0 0 55 5 000 2 22222222222 88888 8 0 0 888888888888 2 555555 2 55 8 88 8 8 0 88 66666666666 22 22 8888 777777777 7 77777 3333 7 22222222222 8 77 8 22 7 2 2 0 7 7 7 22 8 99 666666666 11 000 9999999999999999 7 7 7 777 7 1 7 7 7 22 00 7 777 0 000 0000000 8 0 0 5 11 99 7 7 7 7 7 4 999 0 0 99 0 0 66666666 1 99 99 6 4 6 99 99 1111111111111 1 7 99 7 99 1111 7 6 22 2222222222 7 7 7 7 7 6 7 4 999 7 0 8 7 8 3 3 3 2 8888 88 0 00000 8888 5 2 2 5555555 55555 0 0 0 5555555 5 00000 5 0 2 5 88 88 555 8888 88 0 5 3 7 3 3 3 3 33 3 3 3 3 3
consensus : ATAT-CAATTGC-C-TTG-AGC-C-CTCT-CCGA--TTTTTCTGA-A--T-TTCAAAA-C-CG-ACT-TTGC-------CGAA----------------A-------T-----AC--A-A---AAG----G-----TCGC-CT-AGTTTT---C-GAC--GTT-TTACTCTTGANTACACTNANAGAATGTATTTTCA-GTTTGAAATTAGAATATAAATGTCAGAAATTCAATGGAATTTTG--A-GGCT--CATTGGCTCGAAA-TTGCAATGGCTCGAAACACCTATGAA-G-TCGCA--ATTAA-ACCATTTTTGTTG--TTCCCTT--CT-CA-G-ACTG-G-AA-CGT-ACTT-TA---ACCT-TCG--ATA--G-CTCGA-ACAC-C-C-TTTN------GCTCGAACTGT-TT-T-CAATGGTCCCTT--GCTTTGACTGTACACC------------AATCCA-------C--A--C------TCG-------TGTG-TGATGTAAC--ACCCCCNCCCCCC----C-AAACCAT-GGTATATCTGAAA-TTGAAAATTAACTGCGTG-TTAAATACCTTTTTCCG-AATCTACCTTCA-TCA-GACA-CACTAGGTGGCAGGGGCGGATCCATGATAGAACTTTGTGTTGGGGGGGG-ACGAAAATT-CCGGT-AAGGGTCTG----------AGAAGACC-GGCT-TAGAAGTCGCCCGGCGGGGTCCGGGGCGGAGC-CCCGGT-TGTGAACCCGGCCTC--CCA--GAAGCTGACG----TTGAA--------AGCTTTTCCGGCCGC-AACTGT---G-ATTAT---AAT-TGTA---------TCTTTCCGAATATTATGATCTCAGGATGATTTT--AATGT-TATAACGATGGTAGGCAAAGANT-ATGAAGCAGTT-TGTCGATGCCTTTTTATAGTTC--AATAGA---T--AAATTTACT-GTGGCAAA--AGTTCAGTTAATAT--------------AATGT-ACAC-TA---GT-CTATAGC-ATGTT-AC-AA--AAGATATTCAGTGTA--TTTCTTTTTATTATG-TTTT---GATT-TTGCA---ATACA-------CATACA-CAGA-GAGAGAGAGAGAGAGACGAGAGATTACATAAACTAAAT--T-T-GTCCAA-CCT-CCCAGGCCT--TCA-CC-AAA--GGATT-CCTTT-TT----G-T-TGTTT--TTTT--AATAGCAATTTTGTTT-ATTAA--TAT--AAA-C------A-TTTACAAGTATTCTC-TAAGA-AGACT--GTA----CACGC-CAAAGT--TTATAT----------ACATGTAC-TTTCCGTT-C-TTACACATGATCCAA-GG-ATACAATNTCGT-TTAAGTAT-G-TG-TAACATGATTATGTACCGGTATCATGTTAAAACAAT-ACNTAT-GGGATA-TTACGAT-ATTCTGTGACA-A--TGA--TCTG-AA-----AA-A--GACTTGCGACTTCTT-------TTC---T-TT-CTG-TA-GGG-------TCCATAA-----TGTTTCTCTGGTCCGATTTTTAAAC-CCCGAAAAGTCCGTTGCTGAGCA--CGC--TTA---GTC--T-GGAAAC--GC-GCAAAAAAAACACGGATAGTCCGTCCCCAT-TCCACACCGTGAT-AACTAACAACAAAAACAAGAAAATGAGTTTCA-GTAT-ATATG-TTTAT--AAAT-CATGCTTGTGGTGCAGACAA-TATACAATACTCATCAAAAAGTTA-GCAGTCCAAATAATTATATTCCCTC
Reference ( family-783 ) : ATAT-CAATTGC-C-TTG-AGC-C-CTCT-CCGA--TTTTTCTGA-A--T-TTCAAAA-C-CG-ACT-TTGC-------CGAA----------------A-------T-----AC--------AAG----G-----TCGC-CT-AGTTTT---C-GAC--GTT-TTACTCTTGANTACACTNATAGNATGTATTTTCA-GTTTGAAATTAGAATATAAATGTCAGAAATTCAATGGAATTTTG--A-GGCT--CATTGGCTCGAAA-TTGCAATGGCTCGAAACACCTATGAA-G-TCGCA--ATTAA-ACCATTTTTGTTG--TTCCCTT--CT-CG-G-ACTG-G-AA-CGT-ACTT-TA---ACCT-TCG--ATA--G-CTC---ACAC-C-C-TTTG------GCTCGAACTGT-TT-T-CAATGGTCCCTT--GCTTTGACTGTACACC------------AATCCA-------C--A--C------TCG-------TGTG-TGATGTAAC--ACCCCCNCCCCCC----C-AAACCAT-GGTATATCTGAAA-TTGAAAATTAACTGCGTG-TTAAATACCTTTTTCCG-AATCTACCTTCA-TCA-GACA-CACTAGGNGGCAGGGGCGGATCCATGATAGAACTTTGTGTTGGGGGGGG-ACGAAAATT-CCGGT-AAGGGTCTG----------AGAAGACC-GGCT-TAGAAGTCGCCCGGCGGGGTCCGGGGCGGAGC-CCCGGT-TGTGAACCCGGCCTC--CCA--GAAGCTGACG----TTGAA--------AGCTTTTCCGGCCGC-AACTGT---G-ATTAT---AAT-TGTA---------TCTTTCCGAATATTATGATCTCAGGATGATTTT--AATGT-TATAACGATGGTAGGCAAAGANT-ATGAAGCAGTT-TGTCGATGCCTTTTTATAGTTC--AATAGA---T--AAATTTACTGGTGGCAAA--AGTTCAGTTAATAT--------------AATGT-ACAC-TA---GT-CTATAGC-ATGTT-AC-AA--AAGATATTCAGTGTA--TTTCTTTTTATTATG-TTTT---GATT-TTGCA---ATACA-------CATACA-CAGA-GAGAGAGAGAGAGAGACGAGAGATTACATAAACTAAAT--T-T-GTCCAA-CCT-CCCAGGCCT--TCA-CC-AAA--GGATT-CCTTT-TT----G-T-TGTTT--TTTT--AATAGCAATTTTGTTTNATTAA--TAT--AAA-C------A-TTTACAAGTATTCTC-TAAGA-AGACT--GTA----CACGC-CAAAGT--TTATAT----------ACATGTAC-TTTCCGTT-C-TTACACATGATCCAA-GG-ATACAATNTCGT-TTAAGTAT-G-TG-TAACATGATTATGTACCGGTATCATGTTAAAACAAT-ACNTAT-GGGATA-TTACGAT-ATTCTGTGACA-A--TGA--TCTG-AA-----AA-A--GACTTGCGACTTCTT-------TTC---T-TT-CTG-TA-GGG-------TCCATAA-----TGTTTCTCTGGTCCGATTTTTAAAC-CCCGAAAAGTCCGTTGCTGAGCA--CGC--TTA---GTC--T-GGAAAC--GC-GCAAAAAAAACACGGATAGTCCGTCCCCAT-TCCACACCGTGAT-AACTAACAACAAAAACAAGAAAATGAGTTTCA-GTAT-ATATG-TTTAT--AAAT-CATGCTTGTGGTGCAGACAA-TATACAATACTCATCAAAAAGTTA-GCAGTCCAAATAATTATATTCCCTC
gi|1 : ATAT-CAATTGC----TGAAGCGC-CTCT-CCGA--TTTTTCTGA-A--TCTTCAAAT-C-CG-ACT-TTGC-------CGAA----------------A-------------AT--------AAG----G-----TCGC-CT-AGTTTT---C-GAC--GTT-TTACTCTGAAATACACTGGTAGCATGTATTTTCA-GTTTGAAATTAGAATAGAAATGTCAGAAATTCAATGGAATTTTG--A--GCT--CATTGGCTCG--A-TTGCAATGGCTCGACACACCTATGAT-G-TTGCATTATTAAGACCATTTTTGTTGTTTTCCCTT--CT-CA-GTATTG-GAAA-CGT-ACTT-TAAGGACTTGTCG--ATACGG-CGC---ACGA-C-T-TTTGTGTGGCGCTCGACGTGT-TT-T-CAATGGTCCCTT--GCTTTGACTGTACACCGAATGTTCCGTGAATCCA-------C--A--C------TTG-------TGTG-TGATGTAAC--ACCCCCGCCCCCC----C-AAGCCCT-GGTATATCTGAAA-TTGAAAATT-ACTGCGTG-TTAAATACTGTGTTCCGAAATCTACCTTCAGTCAGGACA--ACTCGGTGGCAGGGGCGGATCCATAATAGAACTTTGTGTTGGGGGGGGAACGAAAATT-CCGGT-AAGGGTC-G----------AGAAGACCGGGCT-TAGAAGTCGCCCAGCGGGGTCCAGGGCAGAGCGCCGGGTGTGTGAATCCCGCCTCGGCCA--GAAGCTGACGGGT-TTGAA--------AGCTTTTCTGGCCGC-AACTGT---G-ATTAT----AT-TGTA---------TCTTTCCGAA-ATT-TGATCTCAGGATGATTTT--AATGTGTATGACGATGGTAGGCAAAGAAT-ATGAAGCAGTT-TGTCGATGCTTTTTTATAGTTC--AATAGA---T--AAATTGACTGGTGGCAAAGTGGTCCAGTTGATAG--------------AATGTAACAC-TAGGTGT-TAATAGCGATGTTCACAAA--AAGATATTCAGTGTAATTTTCTTTTTATTATG-TTTTGCGGATTGTTGCAAATATGCATG-----CATACAGCAGA-GA-AGAGA-AGAGAGACGAGAGATTACATAAACCAAATGGTGT-GTCCAA-CCT-TCCAGG-CT--TCA-CC-GAA--GGATT-CCTTT-TT----G-TGTGTTT--TTTT--AATAGCAATTTTGTTTTATTAA--TATAAAAA-C------AGTTTACAAGTATTCTC-TAAGAGAGACT--G-A----CACGCTCAAAGT--TTATAT----------ACATGTACTTTTCCGTT-CTTTACACATGTTCCAA-GG-ATACAATGTCGTGTGAAGTATGG-TG-TAACATGATTATGTACCGGTATCATGTT-AAACAAT-AC-TATGGGGATAGTTACGATAATTCTG-GACAGA--TGA--TCTGTAA-----AA-A--GAATTGCGACTTCTT-------CTC---T-TTGCTG-TACGGG-------T-CATAAT----TGTTTCTCTGTTCC-ATTTTTAAACGCCGGAAAAGTCCGTTGCTGAG-A--CGC--TTA---GTCTGT-GAAAAC--GC-GC-AAAAAAACACGGATAGTCCGTCCCCATCTCCA-ACCGTGATAAACTAACAACAAAAACAAGAAAATGAGTTTCAGGTAT-ATATG-TTTATGAAAAT-CATGCTTGTGGTGC-GACAAGTATACAATACTCATCAAAAAGTTAGGAAGTCCAAATAATTATATTCCCTC
gi|10 : ATAT-CAATTGC-T-ATG-AAC-C-CTGT-CCGA--CTTATCTGA-A--A-TTCAAAA-C-CG-ACG-TTGCGGAGGGATGAA----------------ACTTTATTC-----ACGCAAAA--AAG----G-----TCGT-CT-AGTTTT---
gi|11 : aaaagtactaagcacaagtataactttgtccatgtttttcgtgttaactcaacataatttctgcagattttcgatcacttaaatagattcgggaaaatatttgatacctggtggataatttcgggtattatattgtgtacatgtattcagtgagtgtttaaggttgttcacgtctcttgtgtgctcccgtcaattattgtcaaagttaacccatcttttcggtcgaggtttctgcgtccattgtcaacttcgaacagctactcaagatttcttaattctcaaaatttcatgaaacatgatttgtttgtttttcATAT-CAATTGC----TG-AGT-C-CTGT-CCGA--TTTTTCTGA-A--C-TGCAAAA-C-CG-ACG-TTGC-------CAAGGGACTGGGCTTTATTCA-------T-----AC--------AAA----ACAGATTCGT-CT-AGTTTT---C-GAG--TTT-TTACTCTTGATT--ATTTAAAGAA---AT------GTT-----TTA-AATAT--ATGCCAGAA------------NNNN--N-NNNN--NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNN-N-NNNNN--NNNNN-NCC-TTTTTATTG---TCCCTTCACT-CA-G-ACTC-G-AA-C
gi|12 : ggtactgttgtcaacttcgtacagctattcaagatttcttaattcacaaaatttattgaaatatggtgtattttttcaTTCTGTGGCA-AAATGACATTTG-GACTACCAACATCGACTTAC-ACTTCTTCGTCCCTTTCAGTTGTT-CTGGTA-GGGGCGGCTCTCCATAAAGTGGTGCTCCTTGGGTCCGATTTTTAAAT-CCCGTAA--TGCTTTGTAGGGCACCCGCCATTGAGCGTC--TGGGGAACAAGCGGCAAAAAAacccatctagctcgaact
gi|13 : atggtccggctacatatgccatgtttgtataatagtgaccataatccgtttcataaggatgattacgctacaagcactcacGCCTC--CCA--GAAGCTGACG----TTGAA---------GCATTTCCGGGCGG-AACTTTTAAGCATTTTCCAAATGTGTACACTATGATTCTTTCCAAATAT---AATCTCAGGG-GATTNN--NNNNN-NNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNNNNN---N--NN-TTTAC-AGTGACAAA--AGTCCAGTTCATATTGTACACTGTTAATAATGT-ACAC-TA---GT-CTATAGC-ATGTT-AT-AA--AAGAca
gi|14 : TGCATAA-CTAAGG--T-T-GTTAAA-CCTTCCCACGCCA---AA-TC-AAA--GGATT-CCTTT-TTTATAG-C-TATTTGTTTTT--AACAG--ATCTTATGGAA--GA--TAT--TAG-CCCTTGTA-TTTGCC--CATTTTA-TGATA-GGAATTCGTAATGACAT-C-CGAGGT--TTAT-----------------TAC-TTTGTGTT-C-TTACACAGGATCCAA-GA-ATAAAATCTCTT-TT-AGAAT-A-AG-TAACATGA--ATGTG--GATGT--TGTTACAACAAA-ACGTA
gi|15 : ACATAAAATACAA--T-T-GTC-AA-T-T-CCCAGGCCT--TCA-CCCAAA--GGATT-CCTTT-TTT---A-T-TATTT--TTTTTTAATAGCAATTT-GTTT-ATTAA--TTT--AAA-C------A-------AGTATATTCATTAGA-AGACT--GTA----CACGC-CAAAGT--ATATAT----------ACATGTAC-TTTCCATT-C-TTACACTTGATCCAA-GG-ATACAATCT---------------------CATGATTATGTACCGGTATCATGTTAAAACAAT-A
gi|16 : aTTAT---GAT-T-------------CTTTCCGAATATTATGATCTGAGGATGATTTT--AATGT-TATAACGAC-GT-----NNNNNN-NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNNNNN---N--NNNNTTACC-GTGGCAAA-------AGTTAATAT----------------TGT-ACACATAG--GTACTAC-GC-ATGTA-GC-AA--AAG--------------TTT---------------TC---GATT-TTGCA---ATACA-------CA-GTA-CAGACGAGac
gi|17 : CAGGGG--GATCCATGAT------TTGTAATTGGGGGGG-G-GAAAATTATCTGC-AGGGGTCTGGATCCAGCGAAGAAGACC-TGTTGTAGGAGACG---GGTGGA---TGAGGCGAAGC-CCC----------CC---CCCC--CCGGCGAAGCTGACGGATTTTCAGTATTATTTAACTTTTCCAGTCGCAAACTGT---G-A
gi|18 : gcCAAGTATTCAC-TA-GA-AGACT--GTA----CACGC-CAACGTATTTATATGAAGATAATTACACGTAC-TTTCCGTT-C-TTACACATGATCCAA-GG-ACAAAATCTCGT-TTAAGTAT-A-TG-TAACATGATCATGTACCGGTATCATGTTAAAACAAT-A
gi|2 : ATAT-CACATGCGC-CTG-AGC-C-CTCT-CCGA--TTTTTCTGACA--T-TTCAAAT-C-CG-ACT-TTGC-------CGAA----------------A-------T-----A----------AG----G-----TCGC-CTTAGTTTTTTTC-GAC--GTT-TTACTCT-GAATACACGTGTA-CATGTATTTTCATGTTTGA--TTAGAATATAAATG-CAGAAATTCAATGGAATTTTGCCA-GGCT--CATTGGCTCGAA--TTGCAATGCATCGAA-CAC-TATGAA-GATTGCA--ATTAA-ACCATTTTTGTTG--T-CCCTT--CT-CA-G-ATTG---AA-CGT-ACTT-TA---ACTT-CCG--ATA--G-CTC---AAACAC-C-TCTT------GCTCGAACTGT-TT-T-CAATGGTCCCTT--GCTTTGACT--ACACC------------AATCCAGTGAAT-C--A--CAACAATTCG-------TGTGGTGATGTA-C--AGCCCCACCCCCC----CCAAACCAT-GGTATATCTGAAAATTGAAAATTAACTGCGTG-TTAAATACCTTTTTCCG-AATCTACCTTCA-TCA-GACA-CA-TAGG---CAGGGGCGGATC----A-AAAATTTGGTGTTGGGGGG---ACGAAA-TT-CTGGTGAAGGGTCT-----------AGAA-ACC-G-CT-TA-AAGTC-CCCAGCGG--TCCAGGGCAGAGC-CCTGGT-TGTGAACCCGGCCTC--CCA--GAAGCTGACG----TTGAA---------GCTTTTCTGGCCGC-AACTGT---G-ATTAT---AAT-TGTA----------CTTTCCGAATATTATGATCTCAGGATGATTTTGTAATGT-TATAACGAT-GTAGGCAAAGATTAATGAA-CAGTTGTGTCAAT--CTTTTTA-AGTTCCAAATAGA---TAAAAATTTACT-GTGGCAAA--AGTTCAGTTAATAT--------------AATGT-ACAC-TA---GT-TTATAGC-ATGTT-AC-AA--AAGATATTCAGTGTA--TTTCTTTTTATTATG-TTTT---GA-T-TTGCA---ATACA-------CATACA-CAGA-GAGAGAGAGAGAGAGAact
gi|21 : TTACATAAA-TGAAT--T-TGGTCCAA-CTT-CCTAGGCCTAGTCA-CC-AAA--GGATTACCTTTGTT----ATT-TGGTT--TTTT--AATAA-AATTGTGTTTATTTAA--TAT--AAA-------------ACGAGTATTCAC-T-AGA-AGACT--GTA----CACGC-CATAGg
gi|22 : TTACATCAAT--AAT--T-T-GCTCAA-TTT-CCCGGGCCT---CATCC-AAAACGGATT-CCTTT-T----------GTTT--TTTT--A-CAGAAATTTTG-TTAATTAAATTATA-AAA-C------A-T
gi|23 : gC--AATAAA-------AATTTACATGTGGCAAA---GTTCAGTTAATAT----------------TGT----C-CA---GT-CTA-AGC-Aagatttttatggaa
gi|24 : taatgatttatacgatgtaacaaattaacgagttaacaatcttgtaagtcccaatcaCA-TC-AAA--GGATT-CTGTT-TT----G-T-TG--C--TTTT--AATAGCAA-GTTGTTT-ACTGA--TAT--CAA-C------
gi|25 : ctaaccctcatcctaacccaTATAC-TT-CCGTTTC-TTACACATGATCTAA-GGAATACAAT-TCGT-TT-AGTAT-ACTGATAACATcat
gi|26 : agttTTATTGTG-TTTT---CATT-TTGTA---ATATAACAAAAACACACA-CATA-CAGAGAGAGAGAGA
gi|27 : ACTGTACACC------------AATCCA-------C--AA-C------TTG-------TATG-TGATGTAAC--ACCCCC
gi|3 : ATAT-CAATTGC-C-TTG-AGC-C-CTCT-CCGA--TTTTTCTGA-A--T-TTCAAAT-C-CG-ACT-TTGC-------CGAA----------------A-------T-----A----------AG----G-----TCGC-CT-AGTTTT---C-GAC--GTT-TTACTCTGAAATACACTG-TA-CATGTATTTTCA-GTTTGAA-TTAGAATATAA-TGTCAGAAATTCAATGGAATTTTG--AAGGCT--CATTGGCTCGAA--TTGCAATGGCTCGAA-CAC---TAAA-G-TTGCA--ATTAA-ACCATTTTTGTTG--T-CCCTT--CT-CA-G-ATTG-G-AA-CGT-ACTT-TA---AC-T-TCG--ATA--G-CTC---AAACAC-C-TTTT------GCTCGAACTGT-TT-T-CAATGGTCCCTT--GCTTTGACTGTACACT------------AATCCAGTTGAATC--A--CAAAT--TCG-------TGTG-TGATGTA-C--ACCCCACCCCCCC----C-AAACCAT-GGTATATCTGAAA-TTGAAAA-TAACTGCGTGTTTAAATACCTTTTTCCG-AATCTACCTTCA-TCA-GACA-CACTAGGct
gi|3 : -TGTGAACCCGGCCTC--CCA--GAAGCTGACG----TTGAA---------GCTTTTCTGGCCGC-AACTGT---G-ATTAT---AAT-TGTA----------CTTTCCGAATATTATGATCTCAGGATGATTTT--AANNN-NNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNNNNN---N-----TTTACTG-TGGCAAA--AGTTCAGTTAATAT--------------AATGT-ACAC-TA---GT-TTATAGC-ATGTT-AC-AA--AAGATATTCAGTGTA--TTTCTTTTTATTATG-TTTT---GATT-TTGCA---ATACA-------CATACA-CAGA-GAGAGAGAGAGAGAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtgaacccggcctcccagaagctgacgttgaagcttttctggccgcaactgtgattataattgtactttccgaatattatgatctcaggatgattttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttactgtggcaaaagttcagttaatataatgtacactagtttatagcatgttacaaaagatattcagtgtatttctttttattatgttttgattttgcaatacacatacacagagagagagagagagag
gi|4 : atatcaattgccttgagccctctccgatttttctgaatttcaaatccgactttgccgaaataaggtcgcctagttttcgacgttttactctgaaatacactgtacatgtattttcagtttgaattagaatataatgtcagaaattcaatggaattttgaaggctcattggctcgaattgcaatggctcgaacactaaagttgcaattaaaccatttttgttgtcccttctcagattggaacgtactttaacttcgatagctcaaacaccttttgctcgaactgttttcaatggtcccttgctttgactgtacactaatccagttgaatcacaaattcgtgtgtgatgtacaccccaccccccccaaaccatggtatatctgaaattgaaaataactgcgtgtttaaatacctttttccgaatctaccttcatcagacacactaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAT-CAATTGC-C-TTG-AGC-C-CTCT-CCGT--CTTTTCTGA-A--T-TCCAAAA-C-TG-ACT-TTGC-------CGAA----------------A-------T-----ACATAAA---AAG----G-----TCGC-CT-AGTTTT---C-GAG--GTT-AAACTTTTGACT--ATTTAAAGAA-ATATTTTTA-ATTTG-AAT----------ATGTCAGAAATACAATGGAATTTCG--ATGGCT--CATTAGCTCG-AA-TTGCAATGGCTCG-AACA-CTATGAGTG-TCGC------AA-ACCA-TTTTGTTG---TCCCTT--GT-CG-G-ACTG-G-AA-CGT-ACTA-TA---ACA--TCG--ATA--G-TTCGA-ATAC-C-C-TCTA------TCTCGAACTGT-TT-T-CAATGGTCCCTT--GGTTTGACTGTACACC------------ATTCCA-------CA-A--C------TTG-------TATG-TGATG------ACCCCCCCCCCCC----
gi|5 : tattaaggattaacctttgtctatgttttacggtgaattcgtgttaactttacttaatttctgcagatttgattcacattaaaaagctttgcaattgttttgaatgtcaattttgtacgtagccgataatttggggtataattcttttgtattcagtggggtgtgtggtttttttttttggtttttttttcttttgatttttaggtagagttttttcacgtccctgacgcactgtcgtcaattacaatgtactagtataataatatataaagttacccactcttttcgttgaattgttttgtgcgtccgttgttaacttcgaacagctattcaagaatttttaattcgcaatatttcatgaaactttgtgtatttttatGAATG-TCGCA--A-----ACCATTTTTGT-G--T--CCTT--CT-CA-G-ATTG-G-AAATGT-ACTT-TA---AC-T-TCG--ATA--G-CTCGAAACAC-C-C-TTTT------GCTCGAACTGT-TT-TTCAGTGG--CCTT--GCTTTGACTGTACACC------------AATCCA-------C--AAGC------TGA-------TGTG-TGATGTAACCAACCCCCCCCC-----------------------TCTGAAA-TTGAAAATTAACTGCGTG-TT-AATAC--TTTTCCG-AATTTACCTTCA-TCA-GACATCACTAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNN-NNNNN-NNNNNNNNN----------NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAA-CTCGGT------------CCTC--CCA--GAAGCTGACG----TTG-A--------AGCTTTTCCGGCCGC-AACTTT---ACATTA--------TGT----------TCTTTCCNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNN-NNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNTT--AAATTTACT-GTGGCAAA--ATTTCAGTTAATAT----------------TGT-A-A--TA---GT-CTATAGC-ATGCT-AC-AAAGAAGATATTCAGTGTA--TTTCTTTTTATTATGTTTTT---GAT
gi|6 : ATATTCAAT-GC-C-TTG-AGC-C-CTCT--CGA---TTTTCTCA-A--T-TTCAAAAGCACG-ACT-TTGC-------CGAA----------------A-------T-----ACACACAATTAAG----G-----TTGC-TT-AGTTTT---T-GA---GTT-TT-CTCTTGACTA-ATTAA-AGAA---ATTATTG-GTTCG-AATTTGAATAT--ATGTCAGAAATACAAT----T--------GGCTCACATTA---CAAAATTTGCAATGTCTCGTAACAC------------------TTAG-AC---TTGAGTTG---TCTATT--CT-CA-G-ACTG-G-AA-CGT-ACCA-TA---ACC--TCG--ATA--G-CTCT--ACAC-CAA-TTTA------GCTCGAACTGTGTTGT-CAATGGTCACTTAGGC-TTGACTGTACACC------------AATCCA-------CAAA--C------TTGTGTGTAATGTG-TGATGCAACCAGCCACCACCCTCCATTTA-AAACCATGGGTTTATCAGAA
gi|7 : ggttagagtttttccacgtccctggtgtactccctcaattactaaacacagttgtttaagttaccccctcttttcgttgaaataatttgtgcgtccgtttgtcaacttcgagcagcatttactcaaaatcttttaattcacgaaaatggctgatattttgagtatttttgtatatttatTTACATAAAC-AAAT--T-T-GTCCAA-CCTTCCCAGGCCT--TCA-CC-AAA--GGATT-CCTTT-TT----G-T-TGTTT--TTTTT-AATAGCAATTT-GTTT-ATTAA--TAT--AAAAC------A-TT-ACAAGTATTCTC-TA-GA-AGACT--GTA----CACGC-CAAAGT--TTATAT----------ACATGTAC-TTTCCGTT-C-TTACACATGATCCAA-GG-ATACAATGTCGT-TTAAGTAT-G-TG-TAACATGATTATGTACCGGTATCATGTTTAAACAAT-AACTAT-GGGATA-TTACGAT-ATTCTGTGACA-A--TGA--TCTG-AA-----AA-A--GACTTGCGACTTC-T-------TTC---T-TT-CTG-TA-GGG-------TCCATAA-----TGTTTCTCTGGTCCAATTTTTAAAC-CCCGAAAAGTCCGTTGCTGAGCA--CGC--TTA---GTC--T-GGAAAC--GC-GC-AAAAAAACACGGATAGTCCGTCCCCAT-TCCACACCGTGAT-AACTAACAACAAAAACAAGAAAATGAGTTTCA-GTAT-ATATG-TTTAT--AAAT-CATGCTTGTGGTGCAGACAA-TATACAATACTCATCAAAAAGTTA-GCAGTCCAAATAATTATATTCCC
gi|8 : TTACATAAAC-AAAT--T-T-GTCCAAACCT-TCCAGGCCT--TCA-CC-AAA--GGATT-CCTTT-TT----G-T-TGTTT--TTTT--TATAGCAATTT-GTTTTATTAA--TAT--AAA-C------A-ATTACAAG-ATTCTC-TA-GA-AGACT--GTA----CACGC-CAA-GT--TTATAT----------ACATGTAC-TTTC--TT-C-TTACACATGATTCAAAGG-ATACAATGTCGT-TTAAGTAT-G-TG-TAACA-GATTATGTACCG-TATCATGTGTTAACAATTACTTAT-GGGATA-TTACGAT-ATTCTGTGACA-A--TGA--TCTG-AA-----AA-A--GACTTGCGACT-CTT-------TTC---T-TT-CTG-TA-GGG-------TCCATAA-----TGTTTCTCTGGTCCAATTTTTAAAC-CCCGAAAAGTCCGTTGCTGAGCA--CGC--TTA---GTC--T-GGAAAC--GC-GCAAAAAAAACACGGATAGTCCGTCCCCAT-TCCACACCGTGAT-AACTAACAACAAAAACAAGAAAATGAGTTTCA-GTATAATATGTTTTAT--AAATACTTGCTTGTGGTGCAGACAA-TATACAATACTCATCAAAAAGTTA-GCAGTCCAAATAATTATAT--CCTCctc
gi|9 : ATAT-CAACTGC-CTTTG-AGC-CTCTCTACCGAACTTTCTCTGACATCT-CTCAAAA-C-CATACTATTGC-------CAAA----------------A-------TTACACAC--------AAACACCG-----TCGTACT-TGTTTT---CGGACTAGTTATTACTCTTGAT---ATTCAAAGAA-ATATTTTTA-ATTTGCAAT---ACTAC---TGTCAGAA--TAACTGTA-------------C--CAT--AC----AA-TGGCA-----TCGAAACA-CTATGAA-G-------------------TTCTGTTG---TCCCTT--CTACGAG-ACTGTGTAA-CGTCACGTATA---ACC--TCGATATA--GCCTCGA-ACAC-C-CGTTTA------GCTCGGACTGT-TT-T-CAATGATCCCTT--Gc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): ACATCTAGGGGCGGATTCAGGAATTCTGGTTTAGGGGCGGGAGTCCGAAGAACTTTATTATACTTAGATGGGCAGGGGTTGGAGGCCGCCTTAAACGTTAGTGTCCCCAGTGGTCCGTAAGGGCAGACACCCTGGTTG
Unaligned ( gi|20 ): TATTAAGCATTAAGCCCTTCATGTTGTGCTTTCTGGTGATTTTGTGTTTAACTTACATATACAGATGGTTACTTACATTAAAAAAGCTTCGTATTGCTTTTTTTGGATGTCAATTTGGTACATATTAGATAAT
Unaligned ( gi|28 ): TACCATCCAGGGGCGGATCCAGGAATTCTGGTT
Alignments
lowQualScore : 1111 1 1111111 888888888888888888888888888888888888888888 1111 111 1111111 222 222222 222 22222 1 1 33333333333333333333333 3333 111 2222 22 1111111 222222222222 666666666666666666666666666666 1111 111111 1 1 1 1 1 11 111 11111111111 11111 1 1 555555555555 111111 11 22 1 11111111111 2222 333333333 11111 1111 44444444444 222222222 111 4444444444444444 111 11 111 111 3333333 11 1 111 11111111 11 11 2222222222222 11 1111 2222222222 111 1 1 1 1 1111 11 1 22222 1111 3333333 11111 1 1 1 3333333 33333 1 1 11 11 111 1111 11 1 1 1 1 1 1 1 11 1 1 1
lowQualScore : 5 6666 5 5 5 5 66 0 8888 55 5 5 5 6666666 444444444444444444444444444444444444444444 5 0000 66 5 5 888 5 222 5 4 1 2222222 1 0 222 0 5 0 222222 555 0 5 1 11 66 88888 77 1 2 2 3 5 2 3 77777777777777777777777 3 0 1111 66 5 5 5 111 5 5 777 888 0000 66 5 5 11 7777777 5 5 5 77 999999999999 666666666666666666666666666666 5 0 7777 7 1 999999 0 8 1 0 3 3 0 3 99 0 0 0 22 2 444 5 77777777777 66666 5 0 0 444444444444 5 444444 5 00 0 00 0 0 0 22 88888888888 99 99 5555 999999999 6 77777 7777 6 11111111111 0 55 0 99 6 7777 1 6 5 6 77 5 77 444444444 888 555 6666666666666666 5 0 5 555 5 0 5 6 6 99 11 6 111 8 444 7777777 3 8 8 2 77 77 5 5 0 5 1 1 222 5 5 66 5 5 88888888 0 66 11 5 666 5 5 66 11 7777777777777 0 5 55 5 77 2222 5 3 99 9999999999 5 5 5 5 5 6 5 8 111 5 1 7 6 0 3 3 3 3 4444 33 0 55555 4444 2 3 3 2222222 88888 0 0 0 2222222 2 55555 0 0 3 2 33 33 777 4444 33 0 5 3 6 3 3 3 3 88 3 7 3 3 7
lowQualScore : . .... . . . . .. . .... .. . . . ....... .......................................... . .... .. . . ... . ... . . . ....... . . ... . . . ...... ... . . . .. .. ..... .. . . . . . . . ....................... . . .... .. . . . ... . . ... ... .... .. . . .. ....... . . . .. ............ .............................. . . .... . . ...... . . . . . . . . .. . . . .. . ... . ........... ..... . . . ............ . ...... . .. . .. . . . .. ........... .. .. .... ......... . ..... .... . ........... . .. . .. . .... . . . . .. . .. ......... ... ... ................ . . . ... . . . . . .. .. . ... . ... ....... . . . . .. .. . . . . . . ... . . .. . . ........ . .. .. . ... . . .. .. ............. . . .. . .. .... . . .. .......... . . . . . . . . ... . . . . . . . . . .... .. . ..... .... . . . ....... ..... . . . ....... . ..... . . . . .. .. ... .... .. . . . . . . . . .. . . . . .
lowQualScore : 0 6666 0 0 0 0 99 0 0000 88 0 0 0 2222222 999999999999999999999999999999999999999999 0 6666 99 0 0 888 7 111 7 9 0 4444444 0 7 111 4 7 1 000000 111 1 0 9 44 11 00000 99 0 9 9 4 7 3 4 99999999999999999999999 1 4 8888 99 0 0 0 222 0 0 555 888 1111 99 0 0 66 4444444 7 7 7 99 333333333333 333333333333333333333333333333 7 1 7777 5 0 222222 6 0 0 0 2 2 0 2 55 0 0 0 55 5 777 2 22222222222 88888 8 0 0 888888888888 2 555555 2 55 8 88 8 8 0 88 66666666666 22 22 8888 777777777 7 77777 3333 7 22222222222 8 77 8 22 7 8888 0 7 7 7 22 8 99 666666666 333 000 9999999999999999 7 7 7 777 7 1 7 7 7 22 00 7 777 0 000 0000000 8 0 0 5 11 99 7 7 7 7 7 4 999 0 0 99 0 0 66666666 1 99 99 6 444 0 0 99 99 1111111111111 1 7 99 7 99 1111 7 6 22 2222222222 7 7 7 7 7 6 7 4 999 7 0 8 7 8 3 3 3 2 8888 88 0 00000 8888 5 2 2 5555555 55555 0 0 0 5555555 5 00000 5 0 2 5 88 88 555 8888 88 0 5 3 7 3 3 3 3 33 3 3 3 3 3
consensus : ATAT-CAATTGC-C-TTGA-GC-C-CTCT-CCGA--TTTTTCTGA-A--T-TTCAAAA-C-CG-ACT-TTGC-------CGAA----------------A-------T---AC----A----A--AA-G----G--TCGC-CT-AGTTTT---C-GAC--GTT-TTACTCTTGANTACACTT-AAAGAATGTATTTTCA-GTTTGAA-TTAGAATATAAATGTCAGAAATTCAATGGAATTTTG--A-GGCTCA--TTGGCTCGAAATT-GCAATGGCTCGAAACACCTATGAA-G-TCGCA--ATTAA-ACCATTTTTGTTG--TTCCCTT--CT-C-AG-ACTG-G-AA-CGT-ACTT-TA---ACCT-TCG--ATAG-CTCGAA-CACCC-TTT------NGCTCGAACTGT-TT-T-CAATGGTCCCTT--GCTTTGACTGTACACC------------AATCCA-------C--AA-C------TCG-------TGTG-TGATGTAAC--ACCCCCNCCCCCC----C-AAACCAT-GGTATATCTGAAA-TTGAAAATTAACTGCGTG-TTAAATACCTTTTTCCG-AATCTACCTTCA-TCA-GACA-CACTAGGTGGCAGGGGCGGATCCATGATAGAACTTTGTGTTGGGGGGGG-ACGAAAATT-CCGGT-AAGGGTCTG----------AGAAGACC-GGCT-TAGAAGTCGCCCGGCGGGGTCCGGGGCGGAGC-CCCGGT-TGTGAACCCGGCCTC--CCA--GAAGCTGACG----TTGAA--------AGCTTTTCCGGCCGC-AACTGT---G-ATTAT---AAT-TGTA---------TCTTTCCGAATATTATGATCTCAGGATGATTTT--AATGT-TATAACGACGGTAGGCAAAGANTA-TGAAGCAGTT-TGTCGATGCCTTTTTATAGTTC--AATAGA---TAAA--TTTAC-T-GTGGCAAA--AGTTCAGTTAATAT--------------AATGT-ACAC-TA---GT-CTATAGC-ATGTT-AC-AA--AAGATATTCAGTGTA--TTTCTTTTTATTATG-TTTT---GATT-TTGCA---ATACA-------CATACA-CAGA-GAGAGAGAGAGAGAGACGAGAGATTACATAAACTAAAT--T-T-GTCCAA-CCT-CCCAGGCCT--TCA-CC-AAA--GGATT-CCTTT-TT----G-T-TGTTT--TTTT--AATAGCAATTTTG-TTTA-TTA-A--TAT--AAA-C------A-TTTACAAGTATTCTC-TAAGA-AGACT--GTA----CACGC-CAAAGT--TTATAT----------ACATGTAC-TTTCCGTT-C-TTACACATGATCCAA-GG-ATACAATNTCGT-TTAAGTAT-G-TG-TAACATGATTATGTACCGGTATCATGTTAAAACAAT-ACNTAT-GGGATA-TTACGAT-ATTCTGTGACA-A--TGA--TCTG-AA-----AA-A--GACTTGCGACTTCTT-------TTC---T-TT-CTG-TA-GGG-------TCCATAA-----TGTTTCTCTGGTCCGATTTTTAAAC-CCCGAAAAGTCCGTTGCTGAGCA--CGC--TTA---GTC--T-GGAAAC--GC-GCAAAAAAAACACGGATAGTCCGTCCCCAT-TCCACACCGTGAT-AACTAACAACAAAAACAAGAAAATGAGTTTCA-GTAT-ATATG-TTTAT--AAAT-CATGCTTGTGGTGCAGACAA-TATACAATACTCATCAAAAAGTTA-GCAGTCCAAATAATTATATTCCCTC
Reference ( family-783 ) : ATAT-CAATTGC-C-TTGA-GC-C-CTCT-CCGA--TTTTTCTGA-A--T-TTCAAAA-C-CG-ACT-TTGC-------CGAA----------------A-------T---AC----A----A--AA-G----G--TCGC-CT-AGTTTT---C-GAC--GTT-TTACTCTTGANTACACTN-ANAGAATGTATTTTCA-GTTTGAAATTAGAATATAAATGTCAGAAATTCAATGGAATTTTG--A-GGCTCA--TTGGCTCGAAATT-GCAATGGCTCGAAACACCTATGAA-G-TCGCA--ATTAA-ACCATTTTTGTTG--TTCCCTT--CT-C-AG-ACTG-G-AA-CGT-ACTT-TA---ACCT-TCG--ATAG-CTCGAA-CACCC-TTT------NGCTCGAACTGT-TT-T-CAATGGTCCCTT--GCTTTGACTGTACACC------------AATCCA-------C--A--C------TCG-------TGTG-TGATGTAAC--ACCCCCNCCCCCC----C-AAACCAT-GGTATATCTGAAA-TTGAAAATTAACTGCGTG-TTAAATACCTTTTTCCG-AATCTACCTTCA-TCA-GACA-CACTAGGTGGCAGGGGCGGATCCATGATAGAACTTTGTGTTGGGGGGGG-ACGAAAATT-CCGGT-AAGGGTCTG----------AGAAGACC-GGCT-TAGAAGTCGCCCGGCGGGGTCCGGGGCGGAGC-CCCGGT-TGTGAACCCGGCCTC--CCA--GAAGCTGACG----TTGAA--------AGCTTTTCCGGCCGC-AACTGT---G-ATTAT---AAT-TGTA---------TCTTTCCGAATATTATGATCTCAGGATGATTTT--AATGT-TATAACGATGGTAGGCAAAGANTA-TGAAGCAGTT-TGTCGATGCCTTTTTATAGTTC--AATAGA---TAAA--TTTAC-T-GTGGCAAA--AGTTCAGTTAATAT--------------AATGT-ACAC-TA---GT-CTATAGC-ATGTT-AC-AA--AAGATATTCAGTGTA--TTTCTTTTTATTATG-TTTT---GATT-TTGCA---ATACA-------CATACA-CAGA-GAGAGAGAGAGAGAGACGAGAGATTACATAAACTAAAT--T-T-GTCCAA-CCT-CCCAGGCCT--TCA-CC-AAA--GGATT-CCTTT-TT----G-T-TGTTT--TTTT--AATAGCAATTTTG-TTTA-TTA-A--TAT--AAA-C------A-TTTACAAGTATTCTC-TAAGA-AGACT--GTA----CACGC-CAAAGT--TTATAT----------ACATGTAC-TTTCCGTT-C-TTACACATGATCCAA-GG-ATACAATNTCGT-TTAAGTAT-G-TG-TAACATGATTATGTACCGGTATCATGTTAAAACAAT-ACNTAT-GGGATA-TTACGAT-ATTCTGTGACA-A--TGA--TCTG-AA-----AA-A--GACTTGCGACTTCTT-------TTC---T-TT-CTG-TA-GGG-------TCCATAA-----TGTTTCTCTGGTCCGATTTTTAAAC-CCCGAAAAGTCCGTTGCTGAGCA--CGC--TTA---GTC--T-GGAAAC--GC-GCAAAAAAAACACGGATAGTCCGTCCCCAT-TCCACACCGTGAT-AACTAACAACAAAAACAAGAAAATGAGTTTCA-GTAT-ATATG-TTTAT--AAAT-CATGCTTGTGGTGCAGACAA-TATACAATACTCATCAAAAAGTTA-GCAGTCCAAATAATTATATTCCCTC
gi|1 : ATAT-CAATTGC----TGAAGCGC-CTCT-CCGA--TTTTTCTGA-A--TCTTCAAAT-C-CG-ACT-TTGC-------CGAA----------------A-----------------A----T--AA-G----G--TCGC-CT-AGTTTT---C-GAC--GTT-TTACTCTGAAATACACTG-GTAGCATGTATTTTCA-GTTTGAAATTAGAATAGAAATGTCAGAAATTCAATGGAATTTTG--A--GCTCA--TTGGCTCG--ATT-GCAATGGCTCGACACACCTATGAT-G-TTGCATTATTAAGACCATTTTTGTTGTTTTCCCTT--CT-C-AGTATTG-GAAA-CGT-ACTT-TAAGGACTTGTCG--ATAC-GGCGCA-CGACT-TTTGTGTGGCGCTCGACGTGT-TT-T-CAATGGTCCCTT--GCTTTGACTGTACACCGAATGTTCCGTGAATCCA-------C--A--C------TTG-------TGTG-TGATGTAAC--ACCCCCGCCCCCC----C-AAGCCCT-GGTATATCTGAAA-TTGAAAATT-ACTGCGTG-TTAAATACTGTGTTCCGAAATCTACCTTCAGTCAGGACA--ACTCGGTGGCAGGGGCGGATCCATAATAGAACTTTGTGTTGGGGGGGGAACGAAAATT-CCGGT-AAGGGTC-G----------AGAAGACCGGGCT-TAGAAGTCGCCCAGCGGGGTCCAGGGCAGAGCGCCGGGTGTGTGAATCCCGCCTCGGCCA--GAAGCTGACGGGT-TTGAA--------AGCTTTTCTGGCCGC-AACTGT---G-ATTAT----AT-TGTA---------TCTTTCCGAA-ATT-TGATCTCAGGATGATTTT--AATGTGTATGACGATGGTAGGCAAAGAATA-TGAAGCAGTT-TGTCGATGCTTTTTTATAGTTC--AATAGA---TAAA--TTGAC-TGGTGGCAAAGTGGTCCAGTTGATAG--------------AATGTAACAC-TAGGTGT-TAATAGCGATGTTCACAAA--AAGATATTCAGTGTAATTTTCTTTTTATTATG-TTTTGCGGATTGTTGCAAATATGCATG-----CATACAGCAGA-GA-AGAGA-AGAGAGACGAGAGATTACATAAACCAAATGGTGT-GTCCAA-CCT-TCCAGG-CT--TCA-CC-GAA--GGATT-CCTTT-TT----G-TGTGTTT--TTTT--AATAGCAATTTTGTTTTA-TTA-A--TATAAAAA-C------AGTTTACAAGTATTCTC-TAAGAGAGACT--G-A----CACGCTCAAAGT--TTATAT----------ACATGTACTTTTCCGTT-CTTTACACATGTTCCAA-GG-ATACAATGTCGTGTGAAGTATGG-TG-TAACATGATTATGTACCGGTATCATGTT-AAACAAT-AC-TATGGGGATAGTTACGATAATTCTG-GACAGA--TGA--TCTGTAA-----AA-A--GAATTGCGACTTCTT-------CTC---T-TTGCTG-TACGGG-------T-CATAAT----TGTTTCTCTGTTCC-ATTTTTAAACGCCGGAAAAGTCCGTTGCTGAG-A--CGC--TTA---GTCTGT-GAAAAC--GC-GC-AAAAAAACACGGATAGTCCGTCCCCATCTCCA-ACCGTGATAAACTAACAACAAAAACAAGAAAATGAGTTTCAGGTAT-ATATG-TTTATGAAAAT-CATGCTTGTGGTGC-GACAAGTATACAATACTCATCAAAAAGTTAGGAAGTCCAAATAATTATATTCCCTC
gi|10 : ATAT-CAATTGC-T-ATGA-AC-C-CTGT-CCGA--CTTATCTGA-A--A-TTCAAAA-C-CG-ACG-TTGCGGAGGGATGAA----------------ACTTTATTC---ACGCAAA----A--AA-G----G--TCGT-CT-AGTTTT---
gi|11 : aaaagtactaagcacaagtataactttgtccatgtttttcgtgttaactcaacataatttctgcagattttcgatcacttaaatagattcgggaaaatatttgatacctggtggataatttcgggtattatattgtgtacatgtattcagtgagtgtttaaggttgttcacgtctcttgtgtgctcccgtcaattattgtcaaagttaacccatcttttcggtcgaggtttctgcgtccattgtcaacttcgaacagctactcaagatttcttaattctcaaaatttcatgaaacatgatttgtttgtttttcATAT-CAATTGC----TGA-GT-C-CTGT-CCGA--TTTTTCTGA-A--C-TGCAAAA-C-CG-ACG-TTGC-------CAAGGGACTGGGCTTTATTCA-------T---AC----A----A--AACA----GATTCGT-CT-AGTTTT---C-GAG--TTT-TTACTCTTGATT--ATTT-AAAGAA---AT------GTT-----TTA-AATAT--ATGCCAGAA------------NNNN--N-NNNNNN--NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNN-N-NNNNN--NNNNN-NCC-TTTTTATTG---TCCCTTCACT-C-AG-ACTC-G-AA-C---AC---------CCA-TC----TAG-CTCGAA-C
gi|12 : ggtactgttgtcaacttcgtacagctattcaagatttcttaattcacaaaatttattgaaatatggtgtattttttcaTTCTGTGGCA-AAATGACATTTG-GACTACCAACATCGACTTAC-ACTTCTTCGTCCCTTTCAGTTGTT-CTGGTA-GGGGCGGCTCTCCATAAAGTGGTGCTCCTTGGGTCCGATTTTTAAAT-CCCGTAA--TGCTTTGTAGGGCACCCGCCATTGAGCGTC--TGGGGAACAAGCGGCAAAAAAt
gi|13 : atggtccggctacatatgccatgtttgtataatagtgaccataatccgtttcataaggatgattacgctacaagcactcacGCCTC--CCA--GAAGCTGACG----TTGAA---------GCATTTCCGGGCGG-AACTTTTAAGCATTTTCCAAATGTGTACACTATGATTCTTTCCAAATAT---AATCTCAGGG-GATTNN--NNNNN-NNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNNNNN---NNN---TTTAC-A-GTGACAAA--AGTCCAGTTCATATTGTACACTGTTAATAATGT-ACAC-TA---GT-CTATAGC-ATGTT-AT-AA--AAGAca
gi|14 : TGCATAA-CTAAGG--T-T-GTTAAA-CCTTCCCACGCCA---AA-TC-AAA--GGATT-CCTTT-TTTATAG-C-TATTTGTTTTT--AACAG--ATCTTA-TGGA---AGA--TAT--TAG-CCCTTGTA-TTTGCC--CATTTTA-TGATA-GGAATTCGTAATGACAT-C-CGAGGT--TTAT-----------------TAC-TTTGTGTT-C-TTACACAGGATCCAA-GA-ATAAAATCTCTT-TT-AGAAT-A-AG-TAACATGA--ATGTG--GATGT--TGTTACAACAAA-ACGTA
gi|15 : ACATAAAATACAA--T-T-GTC-AA-T-T-CCCAGGCCT--TCA-CCCAAA--GGATT-CCTTT-TTT---A-T-TATTT--TTTTTTAATAGCAATTT-G-TTTA-TTA-A--TTT--AAA-C------A-------AGTATATTCATTAGA-AGACT--GTA----CACGC-CAAAGT--ATATAT----------ACATGTAC-TTTCCATT-C-TTACACTTGATCCAA-GG-ATACAATCT---------------------CATGATTATGTACCGGTATCATGTTAAAACAAT-A
gi|16 : aTTAT---GAT-T-------------CTTTCCGAATATTATGATCTGAGGATGATTTT--AATGT-TATAACGAC-GT-----NNNNNNN-NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNNNNN---NNNN--NTTAC-C-GTGGCAAA-------AGTTAATAT----------------TGT-ACACATAG--GTACTAC-GC-ATGTA-GC-AA--AAG--------------TTT---------------TC---GATT-TTGCA---ATACA-------CA-GTA-CAGACGAGac
gi|17 : CAGGGG--GATCCATGAT------TTGTAATTGGGGGGG-G-GAAAATTATCTGC-AGGGGTCTGGATCCAGCGAAGAAGACC-TGTTGTAGGAGACG---GGTGGA---TGAGGCGAAGC-CCC----------CC---CCCC--CCGGCGAAGCTGACGGATTTTCAGTATTATTTAACTTTTCCAGTCGCAAACTGT---G-A
gi|18 : gcCAAGTATTCAC-TA-GA-AGACT--GTA----CACGC-CAACGTATTTATATGAAGATAATTACACGTAC-TTTCCGTT-C-TTACACATGATCCAA-GG-ACAAAATCTCGT-TTAAGTAT-A-TG-TAACATGATCATGTACCGGTATCATGTTAAAACAAT-A
gi|2 : ATAT-CACATGCGC-CTGA-GC-C-CTCT-CCGA--TTTTTCTGACA--T-TTCAAAT-C-CG-ACT-TTGC-------CGAA----------------A-------T---A--------------A-G----G--TCGC-CTTAGTTTTTTTC-GAC--GTT-TTACTCT-GAATACACGT-GTACA-TGTATTTTCATGTTTGA--TTAGAATATAAATG-CAGAAATTCAATGGAATTTTGCCA-GGCTCA--TTGGCTCGAA-TT-GCAATGCATCGAA-CAC-TATGAA-GATTGCA--ATTAA-ACCATTTTTGTTG--T-CCCTT--CT-C-AG-ATTG---AA-CGT-ACTT-TA---ACTT-CCG--ATAG-CTCAAA-CACC--TCT------TGCTCGAACTGT-TT-T-CAATGGTCCCTT--GCTTTGACT--ACACC------------AATCCAGTGAAT-C--A--CAACAATTCG-------TGTGGTGATGTA-C--AGCCCCACCCCCC----CCAAACCAT-GGTATATCTGAAAATTGAAAATTAACTGCGTG-TTAAATACCTTTTTCCG-AATCTACCTTCA-TCA-GACA-CA-TAGG---CAGGGGCGGATC----A-AAAATTTGGTGTTGGGGGG---ACGAAA-TT-CTGGTGAAGGGTCT-----------AGAA-ACC-G-CT-TA-AAGTC-CCCAGCGG--TCCAGGGCAGAGC-CCTGGT-TGTGAACCCGGCCTC--CCA--GAAGCTGACG----TTGAA---------GCTTTTCTGGCCGC-AACTGT---G-ATTAT---AAT-TGTA----------CTTTCCGAATATTATGATCTCAGGATGATTTTGTAATGT-TATAACGATG-TAGGCAAAGATTAATGAA-CAGTTGTGTCAAT--CTTTTTA-AGTTCCAAATAGA---TAAAAATTTAC-T-GTGGCAAA--AGTTCAGTTAATAT--------------AATGT-ACAC-TA---GT-TTATAGC-ATGTT-AC-AA--AAGATATTCAGTGTA--TTTCTTTTTATTATG-TTTT---GA-T-TTGCA---ATACA-------CATACA-CAGA-GAGAGAGAGAGAGAGAact
gi|21 : TTACATAAA-TGAAT--T-TGGTCCAA-CTT-CCTAGGCCTAGTCA-CC-AAA--GGATTACCTTTGTT----ATT-TGGTT--TTTT--AATAA-AATTGTG-TTTATTTA-A--TAT--AAA-------------ACGAGTATTCAC-T-AGA-AGACT--GTA----CACGC-CATAGg
gi|22 : TTACATCAAT--AAT--T-T-GCTCAA-TTT-CCCGGGCCT---CATCC-AAAACGGATT-CCTTT-T----------GTTT--TTTT--A-CAGAAATTTTG-TTAA-TTA-AATTATA-AAA-C------A-T
gi|23 : gC--AATAAA-----AA--TTTACAT-GTGGCAAA---GTTCAGTTAATAT----------------TGT----C-CA---GT-CTA-AGC-Aagatttttatggaa
gi|24 : taatgatttatacgatgtaacaaattaacgagttaacaatcttgtaagtcccaatcaCA-TC-AAA--GGATT-CTGTT-TT----G-T-TG--C--TTTT--AATAGCAA-GTTG-TTTA-CTG-A--TAT--CAA-C------
gi|25 : ctaaccctcatcctaacccaTATAC-TT-CCGTTTC-TTACACATGATCTAA-GGAATACAAT-TCGT-TT-AGTAT-ACTGATAACATcat
gi|26 : agttTTATTGTG-TTTT---CATT-TTGTA---ATATAACAAAAACACACA-CATA-CAGAGAGAGAGAGA
gi|27 : ACTGTACACC------------AATCCA-------C--AA-C------TTG-------TATG-TGATGTAAC--ACCCCC
gi|3 : ATAT-CAATTGC-C-TTGA-GC-C-CTCT-CCGA--TTTTTCTGA-A--T-TTCAAAT-C-CG-ACT-TTGC-------CGAA----------------A-------T---A--------------A-G----G--TCGC-CT-AGTTTT---C-GAC--GTT-TTACTCTGAAATACACTGTACA---TGTATTTTCA-GTTTGAA-TTAGAATATAA-TGTCAGAAATTCAATGGAATTTTG--AAGGCTCA--TTGGCTCGAA-TT-GCAATGGCTCGAA-CAC---TAAA-G-TTGCA--ATTAA-ACCATTTTTGTTG--T-CCCTT--CT-C-AG-ATTG-G-AA-CGT-ACTT-TA---AC-T-TCG--ATAG-CTCAAA-CACC--TTT------TGCTCGAACTGT-TT-T-CAATGGTCCCTT--GCTTTGACTGTACACT------------AATCCAGTTGAATC--A--CAAAT--TCG-------TGTG-TGATGTA-C--ACCCCACCCCCCC----C-AAACCAT-GGTATATCTGAAA-TTGAAAA-TAACTGCGTGTTTAAATACCTTTTTCCG-AATCTACCTTCA-TCA-GACA-CACTAGGct
gi|3 : -TGTGAACCCGGCCTC--CCA--GAAGCTGACG----TTGAA---------GCTTTTCTGGCCGC-AACTGT---G-ATTAT---AAT-TGTA----------CTTTCCGAATATTATGATCTCAGGATGATTTT--AANNN-NNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNNNNN---N-----TTTAC-T-GTGGCAAA--AGTTCAGTTAATAT--------------AATGT-ACAC-TA---GT-TTATAGC-ATGTT-AC-AA--AAGATATTCAGTGTA--TTTCTTTTTATTATG-TTTT---GATT-TTGCA---ATACA-------CATACA-CAGA-GAGAGAGAGAGAGAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtgaacccggcctcccagaagctgacgttgaagcttttctggccgcaactgtgattataattgtactttccgaatattatgatctcaggatgattttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttactgtggcaaaagttcagttaatataatgtacactagtttatagcatgttacaaaagatattcagtgtatttctttttattatgttttgattttgcaatacacatacacagagagagagagagagag
gi|4 : atatcaattgccttgagccctctccgatttttctgaatttcaaatccgactttgccgaaataaggtcgcctagttttcgacgttttactctgaaatacactgtacatgtattttcagtttgaattagaatataatgtcagaaattcaatggaattttgaaggctcattggctcgaattgcaatggctcgaacactaaagttgcaattaaaccatttttgttgtcccttctcagattggaacgtactttaacttcgatagctcaaacaccttttgctcgaactgttttcaatggtcccttgctttgactgtacactaatccagttgaatcacaaattcgtgtgtgatgtacaccccaccccccccaaaccatggtatatctgaaattgaaaataactgcgtgtttaaatacctttttccgaatctaccttcatcagacacactaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAT-CAATTGC-C-TTGA-GC-C-CTCT-CCGT--CTTTTCTGA-A--T-TCCAAAA-C-TG-ACT-TTGC-------CGAA----------------A-------T---AC----ATAA-A--AA-G----G--TCGC-CT-AGTTTT---C-GAG--GTT-AAACTTTTGACTAT--TT-AAAGAA-ATATTTTTA-ATTTGAA---------TA--TGTCAGAAATACAATGGAATTTCG--ATGGCTCA--TTAGCTCGAA-TT-GCAATGGCTCGAA-CAC-TATGAGTG-TCGCA--A-----ACCATTTT-GTTG--T-CCCTT--GT-C-GG-ACTG-G-AA-CGT-ACTA-TA---ACAT--CG--ATAG-TTCGAA-TACCC-TCT------ATCTCGAACTGT-TT-T-CAATGGTCCCTT--GGTTTGACTGTACACC------------ATTCCA-------C--AA-C------TTG-------TATG-TGATG------ACCCCC-CCCCCC----C-
gi|5 : tattaaggattaacctttgtctatgttttacggtgaattcgtgttaactttacttaatttctgcagatttgattcacattaaaaagctttgcaattgttttgaatgtcaattttgtacgtagccgataatttggggtataattcttttgtattcagtggggtgtgtggtttttttttttggtttttttttcttttgatttttaggtagagttttttcacgtccctgacgcactgtcgtcaattacaatgtactagtataataatatataaagttacccactcttttcgttgaattgttttgtgcgtccgttgttaacttcgaacagctattcaagaatttttaattcgcaatatttcatgaaactttgtgtatttttatGAATG-TCGCA--A-----ACCATTTTTGT-G--T--CCTT--CT-C-AG-ATTG-G-AAATGT-ACTT-TA---AC-T-TCG--ATAG-CTCGAAACACCC-TTT------TGCTCGAACTGT-TT-TTCAGTGG--CCTT--GCTTTGACTGTACACC------------AATCCA-------C--AAGC------TGA-------TGTG-TGATGTAACCAACCCCCCCCC-----------------------TCTGAAA-TTGAAAATTAACTGCGTG-TT-AATAC--TTTTCCG-AATTTACCTTCA-TCA-GACATCACTAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNN-NNNNN-NNNNNNNNN----------NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAA-CTCGGT------------CCTC--CCA--GAAGCTGACG----TTG-A--------AGCTTTTCCGGCCGC-AACTTT---ACATTA--------TGT----------TCTTTCCNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNN-NNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNTTAAA--TTTAC-T-GTGGCAAA--ATTTCAGTTAATAT----------------TGT-A-A--TA---GT-CTATAGC-ATGCT-AC-AAAGAAGATATTCAGTGTA--TTTCTTTTTATTATGTTTTT---GAT
gi|6 : ATATTCAAT-GC-C-TTGA-GC-C-CTCT-C-GA--TTTT-CTCA-A--T-TTCAAAAGCACG-ACT-TTGC-------CGAA----------------A-------T---AC----ACACAATTAA-G----G--TTGC-TT-AGTTTT---T-GA---GTT-TT-CTCTTGACTA-A-TT-AAAGAA---ATTATTG-GTTCGAATTT-GAATATA--TGTCAGAAATACAAT-------TG-----GCTCACATTA---CAAAATTTGCAATGTCTCGTAACAC------------------TTAG-AC---TTGAGTTG--T-CTATT--CT-C-AG-ACTG-G-AA-CGT-ACCA-TA---ACCT--CG--ATAG-CTCTA--CACCAATTT------AGCTCGAACTGTGTTGT-CAATGGTCACTTAGGCTT-GACTGTACACC------------AATCCA-------CAAA--C------TTGTGTGTAATGTG-TGATGCAACCAGCCACCACCCTCCATTTA-AAACCATGGGTTTATCAGAA
gi|7 : ggttagagtttttccacgtccctggtgtactccctcaattactaaacacagttgtttaagttaccccctcttttcgttgaaataatttgtgcgtccgtttgtcaacttcgagcagcatttactcaaaatcttttaattcacgaaaatggctgatattttgagtatttttgtatatttatTTACATAAAC-AAAT--T-T-GTCCAA-CCTTCCCAGGCCT--TCA-CC-AAA--GGATT-CCTTT-TT----G-T-TGTTT--TTTTT-AATAGCAATTT-G-TTTA-TTA-A--TAT--AAAAC------A-TT-ACAAGTATTCTC-TA-GA-AGACT--GTA----CACGC-CAAAGT--TTATAT----------ACATGTAC-TTTCCGTT-C-TTACACATGATCCAA-GG-ATACAATGTCGT-TTAAGTAT-G-TG-TAACATGATTATGTACCGGTATCATGTTTAAACAAT-AACTAT-GGGATA-TTACGAT-ATTCTGTGACA-A--TGA--TCTG-AA-----AA-A--GACTTGCGACTTC-T-------TTC---T-TT-CTG-TA-GGG-------TCCATAA-----TGTTTCTCTGGTCCAATTTTTAAAC-CCCGAAAAGTCCGTTGCTGAGCA--CGC--TTA---GTC--T-GGAAAC--GC-GC-AAAAAAACACGGATAGTCCGTCCCCAT-TCCACACCGTGAT-AACTAACAACAAAAACAAGAAAATGAGTTTCA-GTAT-ATATG-TTTAT--AAAT-CATGCTTGTGGTGCAGACAA-TATACAATACTCATCAAAAAGTTA-GCAGTCCAAATAATTATATTCCC
gi|8 : TTACATAAAC-AAAT--T-T-GTCCAAACCT-TCCAGGCCT--TCA-CC-AAA--GGATT-CCTTT-TT----G-T-TGTTT--TTTT--TATAGCAATTTGT-TTTA-TTA-A--TAT--AAA-C------A-ATTACAAG-ATTCTC-TA-GA-AGACT--GTA----CACGC-CAA-GT--TTATAT----------ACATGTAC-TTTC--TT-C-TTACACATGATTCAAAGG-ATACAATGTCGT-TTAAGTAT-G-TG-TAACA-GATTATGTACCG-TATCATGTGTTAACAATTACTTAT-GGGATA-TTACGAT-ATTCTGTGACA-A--TGA--TCTG-AA-----AA-A--GACTTGCGACT-CTT-------TTC---T-TT-CTG-TA-GGG-------TCCATAA-----TGTTTCTCTGGTCCAATTTTTAAAC-CCCGAAAAGTCCGTTGCTGAGCA--CGC--TTA---GTC--T-GGAAAC--GC-GCAAAAAAAACACGGATAGTCCGTCCCCAT-TCCACACCGTGAT-AACTAACAACAAAAACAAGAAAATGAGTTTCA-GTATAATATGTTTTAT--AAATACTTGCTTGTGGTGCAGACAA-TATACAATACTCATCAAAAAGTTA-GCAGTCCAAATAATTATAT--CCTCctc
gi|9 : ATAT-CAACTGC-CTTTGA-GC-CTCTCTACCGAACTTTCTCTGACATCT-CTCAAAA-C-CATACTATTGC-------CAAA----------------A-------TTACAC----A----C--AA-ACACCG--TCGTACT-TGTTTT---CGGACTAGTTATTACTCTTGAT---ATTC-AAAGAA-ATATTTTTA-ATTTGCAAT---ACTAC---TGTCAGAA--TAACTGTA-------------CCA--T--AC----AATG-GCA-----TCGAAACA-CTATGAA-G-------------------TTCTGTTG---TCCCTT--CTACGAG-ACTGTGTAA-CGTCACGTATA---ACC--TCGATATAGCCTCGAA-CACCCGTTT------AGCTCGGACTGT-TT-T-CAATGATCCCTT--Gc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): ACATCTAGGGGCGGATTCAGGAATTCTGGTTTAGGGGCGGGAGTCCGAAGAACTTTATTATACTTAGATGGGCAGGGGTTGGAGGCCGCCTTAAACGTTAGTGTCCCCAGTGGTCCGTAAGGGCAGACACCCTGGTTG
Unaligned ( gi|20 ): TATTAAGCATTAAGCCCTTCATGTTGTGCTTTCTGGTGATTTTGTGTTTAACTTACATATACAGATGGTTACTTACATTAAAAAAGCTTCGTATTGCTTTTTTTGGATGTCAATTTGGTACATATTAGATAAT
Unaligned ( gi|28 ): TACCATCCAGGGGCGGATCCAGGAATTCTGGTT
Alignments
lowQualScore : 1111 1 1111111 88888888888888888888888888888888888888888888 1111 111 111111 222 1111111 111 22222222222 11 1 33333333333333333333333 3333 111 222 222 1111111 222222222222 55555555555 1 1111111 1111 222222 1 1 1 1 1 11 111 11111111111 11111 1 1 555555555555 111111 11 22 1 11111111111 2222 333333333 11111 1111 44444444444 222222222 111 4444444444444444 111 11 111 111 3333333 11 1 111 11111111 11 11 2222222222222 11 1111 2222222222 111 1 1 1 1 1111 11 1 22222 1111 3333333 11111 1 1 1 3333333 33333 1 1 11 11 111 1111 11 1 1 1 1 1 1 1 11 1 1 1
lowQualScore : 5 6666 5 5 5 5 777 0 8888 55 5 5 5 6666666 44444444444444444444444444444444444444444444 5 0000 66 5 5 888 5 222 5 4 1 111111 1 0 222 0 5 0 3333333 444 0 5 1 11 55555555555 77 1 2 2 99 2 3 77777777777777777777777 3 0 1111 66 5 5 5 111 5 5 777 888 111 66 5 0 5 111 7777777 5 5 5 77 999999999999 00000000000 5 1 2 8888888 5 0 7777 1 1 222222 0 8 1 0 3 3 0 3 99 0 0 0 22 2 444 5 77777777777 66666 5 0 0 444444444444 5 444444 5 00 0 00 0 0 0 22 88888888888 99 99 5555 999999999 6 77777 7777 6 11111111111 0 55 0 99 6 88888 1 6 5 6 77 5 77 444444444 888 555 6666666666666666 5 0 5 555 5 0 5 6 6 99 11 6 111 8 444 7777777 3 8 8 2 77 77 5 5 0 5 1 1 222 5 5 66 5 5 88888888 0 66 11 5 666 5 5 66 11 7777777777777 0 5 55 5 77 2222 5 3 99 9999999999 5 5 5 5 5 6 5 8 111 5 1 7 6 0 3 3 3 3 4444 33 0 55555 4444 2 3 3 2222222 88888 0 0 0 2222222 2 55555 0 0 3 2 33 33 777 4444 33 0 5 3 6 3 3 3 3 88 3 7 3 3 7
lowQualScore : . .... . . . . ... . .... .. . . . ....... ............................................ . .... .. . . ... . ... . . . ...... . . ... . . . ....... ... . . . .. ........... .. . . . .. . . ....................... . . .... .. . . . ... . . ... ... ... .. . . . ... ....... . . . .. ............ ........... . . . ....... . . .... . . ...... . . . . . . . . .. . . . .. . ... . ........... ..... . . . ............ . ...... . .. . .. . . . .. ........... .. .. .... ......... . ..... .... . ........... . .. . .. . ..... . . . . .. . .. ......... ... ... ................ . . . ... . . . . . .. .. . ... . ... ....... . . . . .. .. . . . . . . ... . . .. . . ........ . .. .. . ... . . .. .. ............. . . .. . .. .... . . .. .......... . . . . . . . . ... . . . . . . . . . .... .. . ..... .... . . . ....... ..... . . . ....... . ..... . . . . .. .. ... .... .. . . . . . . . . .. . . . . .
lowQualScore : 0 6666 0 0 0 0 888 0 0000 88 0 0 0 2222222 99999999999999999999999999999999999999999999 0 6666 99 0 0 888 7 111 7 9 0 444444 9 7 111 4 7 1 7777777 999 1 0 9 44 99999999999 99 0 9 9 11 3 4 99999999999999999999999 1 4 8888 99 0 0 0 222 0 0 555 888 111 99 0 1 0 666 4444444 7 7 7 99 333333333333 00000000000 7 4 7 6666666 7 1 7777 0 0 222222 6 0 0 0 2 2 0 2 55 0 0 0 55 5 777 2 22222222222 88888 8 0 0 888888888888 2 555555 2 55 8 88 8 8 0 88 66666666666 22 22 8888 777777777 7 77777 3333 7 22222222222 8 77 8 22 7 77777 0 7 7 7 22 8 99 666666666 333 000 9999999999999999 7 7 7 777 7 1 7 7 7 22 00 7 777 0 000 0000000 8 0 0 5 11 99 7 7 7 7 7 4 999 0 0 99 0 0 66666666 1 99 99 6 444 0 0 99 99 1111111111111 1 7 99 7 99 1111 7 6 22 2222222222 7 7 7 7 7 6 7 4 999 7 0 8 7 8 3 3 3 2 8888 88 0 00000 8888 5 2 2 5555555 55555 0 0 0 5555555 5 00000 5 0 2 5 88 88 555 8888 88 0 5 3 7 3 3 3 3 33 3 3 3 3 3
consensus : ATAT-CAATTGC-C-TTGA-GC-C-CTCT-CCGA--TTTTTCTGA-A--T-TTCAAAA-C-CG-ACT-TTGC-------CGAA----------------A-------T---AC----A---A-----AA-G----G--TCGC-CT-AGTTTT---C-GAC--GTT-TTACTCTTGANTACACT-TAAAGAATGTATTTTCA-GTTTG-AATTAGAATATAAATGTCAGAAATTCAATGGAATTTTG--A-GGCT--CATTGGCTCGAAA-TTGCAATGGCTCGAAACACCTATGAA-G-TCGCA--ATTAA-ACCATTTTTGTTG--TTCCCTT--CT-C-AG-ACTG-G-AA-CGT-ACTT-TA---ACCT-TCG--ATAG-CTCGAA-CACC-C-TTT------NGCTCGAACTGT-TT-T-CAATGGTCCCTT--GCTTTGACTGTACACC------------AATCCA-----------C-AA-CTCG-------TGTG-TGATGTAAC--ACCCCCNCCCCCC----C-AAACCAT-GGTATATCTGAAA-TTGAAAATTAACTGCGTG-TTAAATACCTTTTTCCG-AATCTACCTTCA-TCA-GACA-CACTAGGTGGCAGGGGCGGATCCATGATAGAACTTTGTGTTGGGGGGGG-ACGAAAATT-CCGGT-AAGGGTCTG----------AGAAGACC-GGCT-TAGAAGTCGCCCGGCGGGGTCCGGGGCGGAGC-CCCGGT-TGTGAACCCGGCCTC--CCA--GAAGCTGACG----TTGAA--------AGCTTTTCCGGCCGC-AACTGT---G-ATTAT---AAT-TGTA---------TCTTTCCGAATATTATGATCTCAGGATGATTTT--AATGT-TATAACGACGGTAGGCAAAGANTA-TGAAGCAGTT-TGTCGATGCCTTTTTATAGTTC--AATAGA---TAAA--TTTAC-T-GTGGCAAA--AGTTCAGTTAATAT--------------AATGT-ACAC-TA---GT-CTATAGC-ATGTT-AC-AA--AAGATATTCAGTGTA--TTTCTTTTTATTATG-TTTT---GATT-TTGCA---ATACA-------CATACA-CAGA-GAGAGAGAGAGAGAGACGAGAGATTACATAAACTAAAT--T-T-GTCCAA-CCT-CCCAGGCCT--TCA-CC-AAA--GGATT-CCTTT-TT----G-T-TGTTT--TTTT--AATAGCAATTTTG-TTTA-TTA-A--TAT--AAA-C------A-TTTACAAGTATTCTC-TAAGA-AGACT--GTA----CACGC-CAAAGT--TTATAT----------ACATGTAC-TTTCCGTT-C-TTACACATGATCCAA-GG-ATACAATNTCGT-TTAAGTAT-G-TG-TAACATGATTATGTACCGGTATCATGTTAAAACAAT-ACNTAT-GGGATA-TTACGAT-ATTCTGTGACA-A--TGA--TCTG-AA-----AA-A--GACTTGCGACTTCTT-------TTC---T-TT-CTG-TA-GGG-------TCCATAA-----TGTTTCTCTGGTCCGATTTTTAAAC-CCCGAAAAGTCCGTTGCTGAGCA--CGC--TTA---GTC--T-GGAAAC--GC-GCAAAAAAAACACGGATAGTCCGTCCCCAT-TCCACACCGTGAT-AACTAACAACAAAAACAAGAAAATGAGTTTCA-GTAT-ATATG-TTTAT--AAAT-CATGCTTGTGGTGCAGACAA-TATACAATACTCATCAAAAAGTTA-GCAGTCCAAATAATTATATTCCCTC
Reference ( family-783 ) : ATAT-CAATTGC-C-TTGA-GC-C-CTCT-CCGA--TTTTTCTGA-A--T-TTCAAAA-C-CG-ACT-TTGC-------CGAA----------------A-------T---AC----A---A-----AA-G----G--TCGC-CT-AGTTTT---C-GAC--GTT-TTACTCTTGANTACACT-TAAAGAATGTATTTTCA-GTTTG-AATTAGAATATAAATGTCAGAAATTCAATGGAATTTTG--A-GGCT--CATTGGCTCGAAA-TTGCAATGGCTCGAAACACCTATGAA-G-TCGCA--ATTAA-ACCATTTTTGTTG--TTCCCTT--CT-C-AG-ACTG-G-AA-CGT-ACTT-TA---ACCT-TCG--ATAG-CTCGAA-CACC-C-TTT------NGCTCGAACTGT-TT-T-CAATGGTCCCTT--GCTTTGACTGTACACC------------AATCCA-----------C-AA-CTCG-------TGTG-TGATGTAAC--ACCCCCNCCCCCC----C-AAACCAT-GGTATATCTGAAA-TTGAAAATTAACTGCGTG-TTAAATACCTTTTTCCG-AATCTACCTTCA-TCA-GACA-CACTAGGTGGCAGGGGCGGATCCATGATAGAACTTTGTGTTGGGGGGGG-ACGAAAATT-CCGGT-AAGGGTCTG----------AGAAGACC-GGCT-TAGAAGTCGCCCGGCGGGGTCCGGGGCGGAGC-CCCGGT-TGTGAACCCGGCCTC--CCA--GAAGCTGACG----TTGAA--------AGCTTTTCCGGCCGC-AACTGT---G-ATTAT---AAT-TGTA---------TCTTTCCGAATATTATGATCTCAGGATGATTTT--AATGT-TATAACGACGGTAGGCAAAGANTA-TGAAGCAGTT-TGTCGATGCCTTTTTATAGTTC--AATAGA---TAAA--TTTAC-T-GTGGCAAA--AGTTCAGTTAATAT--------------AATGT-ACAC-TA---GT-CTATAGC-ATGTT-AC-AA--AAGATATTCAGTGTA--TTTCTTTTTATTATG-TTTT---GATT-TTGCA---ATACA-------CATACA-CAGA-GAGAGAGAGAGAGAGACGAGAGATTACATAAACTAAAT--T-T-GTCCAA-CCT-CCCAGGCCT--TCA-CC-AAA--GGATT-CCTTT-TT----G-T-TGTTT--TTTT--AATAGCAATTTTG-TTTA-TTA-A--TAT--AAA-C------A-TTTACAAGTATTCTC-TAAGA-AGACT--GTA----CACGC-CAAAGT--TTATAT----------ACATGTAC-TTTCCGTT-C-TTACACATGATCCAA-GG-ATACAATNTCGT-TTAAGTAT-G-TG-TAACATGATTATGTACCGGTATCATGTTAAAACAAT-ACNTAT-GGGATA-TTACGAT-ATTCTGTGACA-A--TGA--TCTG-AA-----AA-A--GACTTGCGACTTCTT-------TTC---T-TT-CTG-TA-GGG-------TCCATAA-----TGTTTCTCTGGTCCGATTTTTAAAC-CCCGAAAAGTCCGTTGCTGAGCA--CGC--TTA---GTC--T-GGAAAC--GC-GCAAAAAAAACACGGATAGTCCGTCCCCAT-TCCACACCGTGAT-AACTAACAACAAAAACAAGAAAATGAGTTTCA-GTAT-ATATG-TTTAT--AAAT-CATGCTTGTGGTGCAGACAA-TATACAATACTCATCAAAAAGTTA-GCAGTCCAAATAATTATATTCCCTC
gi|1 : ATAT-CAATTGC----TGAAGCGC-CTCT-CCGA--TTTTTCTGA-A--TCTTCAAAT-C-CG-ACT-TTGC-------CGAA----------------A-----------------A---T-----AA-G----G--TCGC-CT-AGTTTT---C-GAC--GTT-TTACTCTGAAATACACT-GGTAGCATGTATTTTCA-GTTTGAAATTAGAATAGAAATGTCAGAAATTCAATGGAATTTTG--A--GCT--CATTGGCTCG--A-TTGCAATGGCTCGACACACCTATGAT-G-TTGCATTATTAAGACCATTTTTGTTGTTTTCCCTT--CT-C-AGTATTG-GAAA-CGT-ACTT-TAAGGACTTGTCG--ATAC-GGCGCA-CGAC-T-TTTGTGTGGCGCTCGACGTGT-TT-T-CAATGGTCCCTT--GCTTTGACTGTACACCGAATGTTCCGTGAATCCA-----------C--A-CTTG-------TGTG-TGATGTAAC--ACCCCCGCCCCCC----C-AAGCCCT-GGTATATCTGAAA-TTGAAAATT-ACTGCGTG-TTAAATACTGTGTTCCGAAATCTACCTTCAGTCAGGACA--ACTCGGTGGCAGGGGCGGATCCATAATAGAACTTTGTGTTGGGGGGGGAACGAAAATT-CCGGT-AAGGGTC-G----------AGAAGACCGGGCT-TAGAAGTCGCCCAGCGGGGTCCAGGGCAGAGCGCCGGGTGTGTGAATCCCGCCTCGGCCA--GAAGCTGACGGGT-TTGAA--------AGCTTTTCTGGCCGC-AACTGT---G-ATTAT----AT-TGTA---------TCTTTCCGAA-ATT-TGATCTCAGGATGATTTT--AATGTGTATGACGATGGTAGGCAAAGAATA-TGAAGCAGTT-TGTCGATGCTTTTTTATAGTTC--AATAGA---TAAA--TTGAC-TGGTGGCAAAGTGGTCCAGTTGATAG--------------AATGTAACAC-TAGGTGT-TAATAGCGATGTTCACAAA--AAGATATTCAGTGTAATTTTCTTTTTATTATG-TTTTGCGGATTGTTGCAAATATGCATG-----CATACAGCAGA-GA-AGAGA-AGAGAGACGAGAGATTACATAAACCAAATGGTGT-GTCCAA-CCT-TCCAGG-CT--TCA-CC-GAA--GGATT-CCTTT-TT----G-TGTGTTT--TTTT--AATAGCAATTTTGTTTTA-TTA-A--TATAAAAA-C------AGTTTACAAGTATTCTC-TAAGAGAGACT--G-A----CACGCTCAAAGT--TTATAT----------ACATGTACTTTTCCGTT-CTTTACACATGTTCCAA-GG-ATACAATGTCGTGTGAAGTATGG-TG-TAACATGATTATGTACCGGTATCATGTT-AAACAAT-AC-TATGGGGATAGTTACGATAATTCTG-GACAGA--TGA--TCTGTAA-----AA-A--GAATTGCGACTTCTT-------CTC---T-TTGCTG-TACGGG-------T-CATAAT----TGTTTCTCTGTTCC-ATTTTTAAACGCCGGAAAAGTCCGTTGCTGAG-A--CGC--TTA---GTCTGT-GAAAAC--GC-GC-AAAAAAACACGGATAGTCCGTCCCCATCTCCA-ACCGTGATAAACTAACAACAAAAACAAGAAAATGAGTTTCAGGTAT-ATATG-TTTATGAAAAT-CATGCTTGTGGTGC-GACAAGTATACAATACTCATCAAAAAGTTAGGAAGTCCAAATAATTATATTCCCTC
gi|10 : ATAT-CAATTGC-T-ATGA-AC-C-CTGT-CCGA--CTTATCTGA-A--A-TTCAAAA-C-CG-ACG-TTGCGGAGGGATGAA----------------ACTTTATTC---ACGCAAA---A-----AA-G----G--TCGT-CT-AGTTTT---
gi|11 : aaaagtactaagcacaagtataactttgtccatgtttttcgtgttaactcaacataatttctgcagattttcgatcacttaaatagattcgggaaaatatttgatacctggtggataatttcgggtattatattgtgtacatgtattcagtgagtgtttaaggttgttcacgtctcttgtgtgctcccgtcaattattgtcaaagttaacccatcttttcggtcgaggtttctgcgtccattgtcaacttcgaacagctactcaagatttcttaattctcaaaatttcatgaaacatgatttgtttgtttttcATAT-CAATTGC----TGA-GT-C-CTGT-CCGA--TTTTTCTGA-A--C-TGCAAAA-C-CG-ACG-TTGC-------CAAGGGACTGGGCTTTATTCA-------T---AC----A---A-----AACA----GATTCGT-CT-AGTTTT---C-GAG--TTT-TTACTCTTGATT--ATT-TAAAGAA---AT------GTT-----TTA-AATAT--ATGCCAGAA------------NNNN--N-NNNN--NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNN-N-NNNNN--NNNNN-NCC-TTTTTATTG---TCCCTTCACT-C-AG-ACTC-G-AA-C---AC---------CCA-TC----TAG-CTCGAA-C
gi|12 : ggtactgttgtcaacttcgtacagctattcaagatttcttaattcacaaaatttattgaaatatggtgtattttttcaTTCTGTGGCA-AAATGACATTTG-GACTACCAACATCGACTTAC-ACTTCTTCGTCCCTTTCAGTTGTT-CTGGTA-GGGGCGGCTCTCCATAAAGTGGTGCTCCTTGGGTCCGATTTTTAAAT-CCCGTAA--TGCTTTGTAGGGCACCCGCCATTGAGCGTC--TGGGGAACAAGCGGCAAAAAAt
gi|13 : atggtccggctacatatgccatgtttgtataatagtgaccataatccgtttcataaggatgattacgctacaagcactcacGCCTC--CCA--GAAGCTGACG----TTGAA---------GCATTTCCGGGCGG-AACTTTTAAGCATTTTCCAAATGTGTACACTATGATTCTTTCCAAATAT---AATCTCAGGG-GATTNN--NNNNN-NNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNNNNN---NNN---TTTAC-A-GTGACAAA--AGTCCAGTTCATATTGTACACTGTTAATAATGT-ACAC-TA---GT-CTATAGC-ATGTT-AT-AA--AAGAca
gi|14 : TGCATAA-CTAAGG--T-T-GTTAAA-CCTTCCCACGCCA---AA-TC-AAA--GGATT-CCTTT-TTTATAG-C-TATTTGTTTTT--AACAG--ATCTTA-TGGA---AGA--TAT--TAG-CCCTTGTA-TTTGCC--CATTTTA-TGATA-GGAATTCGTAATGACAT-C-CGAGGT--TTAT-----------------TAC-TTTGTGTT-C-TTACACAGGATCCAA-GA-ATAAAATCTCTT-TT-AGAAT-A-AG-TAACATGA--ATGTG--GATGT--TGTTACAACAAA-ACGTA
gi|15 : ACATAAAATACAA--T-T-GTC-AA-T-T-CCCAGGCCT--TCA-CCCAAA--GGATT-CCTTT-TTT---A-T-TATTT--TTTTTTAATAGCAATTT-G-TTTA-TTA-A--TTT--AAA-C------A-------AGTATATTCATTAGA-AGACT--GTA----CACGC-CAAAGT--ATATAT----------ACATGTAC-TTTCCATT-C-TTACACTTGATCCAA-GG-ATACAATCT---------------------CATGATTATGTACCGGTATCATGTTAAAACAAT-A
gi|16 : aTTAT---GAT-T-------------CTTTCCGAATATTATGATCTGAGGATGATTTT--AATGT-TATAACGAC-GT-----NNNNNNN-NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNNNNN---NNNN--NTTAC-C-GTGGCAAA-------AGTTAATAT----------------TGT-ACACATAG--GTACTAC-GC-ATGTA-GC-AA--AAG--------------TTT---------------TC---GATT-TTGCA---ATACA-------CA-GTA-CAGACGAGac
gi|17 : CAGGGG--GATCCATGAT------TTGTAATTGGGGGGG-G-GAAAATTATCTGC-AGGGGTCTGGATCCAGCGAAGAAGACC-TGTTGTAGGAGACG---GGTGGA---TGAGGCGAAGC-CCC----------CC---CCCC--CCGGCGAAGCTGACGGATTTTCAGTATTATTTAACTTTTCCAGTCGCAAACTGT---G-A
gi|18 : gcCAAGTATTCAC-TA-GA-AGACT--GTA----CACGC-CAACGTATTTATATGAAGATAATTACACGTAC-TTTCCGTT-C-TTACACATGATCCAA-GG-ACAAAATCTCGT-TTAAGTAT-A-TG-TAACATGATCATGTACCGGTATCATGTTAAAACAAT-A
gi|2 : ATAT-CACATGCGC-CTGA-GC-C-CTCT-CCGA--TTTTTCTGACA--T-TTCAAAT-C-CG-ACT-TTGC-------CGAA----------------A-------T---A----------------A-G----G--TCGC-CTTAGTTTTTTTC-GAC--GTT-TTACTCT-GAATACACG-TGTACA-TGTATTTTCATGTTTG-A-TTAGAATATAAATG-CAGAAATTCAATGGAATTTTGCCA-GGCT--CATTGGCTCGAA--TTGCAATGCATCGAA-CAC-TATGAA-GATTGCA--ATTAA-ACCATTTTTGTTG--T-CCCTT--CT-C-AG-ATTG---AA-CGT-ACTT-TA---ACTT-CCG--ATAG-CTCAAA-CACC---TCT------TGCTCGAACTGT-TT-T-CAATGGTCCCTT--GCTTTGACT--ACACC------------AATCCAGTGAATCACAAC-AA-TTCG-------TGTGGTGATGTA-C--AGCCCCACCCCCC----CCAAACCAT-GGTATATCTGAAAATTGAAAATTAACTGCGTG-TTAAATACCTTTTTCCG-AATCTACCTTCA-TCA-GACA-CA-TAGG---CAGGGGCGGATC----A-AAAATTTGGTGTTGGGGGG---ACGAAA-TT-CTGGTGAAGGGTCT-----------AGAA-ACC-G-CT-TA-AAGTC-CCCAGCGG--TCCAGGGCAGAGC-CCTGGT-TGTGAACCCGGCCTC--CCA--GAAGCTGACG----TTGAA---------GCTTTTCTGGCCGC-AACTGT---G-ATTAT---AAT-TGTA----------CTTTCCGAATATTATGATCTCAGGATGATTTTGTAATGT-TATAACGATG-TAGGCAAAGATTAATGAA-CAGTTGTGTCAAT--CTTTTTA-AGTTCCAAATAGA---TAAAAATTTAC-T-GTGGCAAA--AGTTCAGTTAATAT--------------AATGT-ACAC-TA---GT-TTATAGC-ATGTT-AC-AA--AAGATATTCAGTGTA--TTTCTTTTTATTATG-TTTT---GA-T-TTGCA---ATACA-------CATACA-CAGA-GAGAGAGAGAGAGAGAact
gi|21 : TTACATAAA-TGAAT--T-TGGTCCAA-CTT-CCTAGGCCTAGTCA-CC-AAA--GGATTACCTTTGTT----ATT-TGGTT--TTTT--AATAA-AATTGTG-TTTATTTA-A--TAT--AAA-------------ACGAGTATTCAC-T-AGA-AGACT--GTA----CACGC-CATAGg
gi|22 : TTACATCAAT--AAT--T-T-GCTCAA-TTT-CCCGGGCCT---CATCC-AAAACGGATT-CCTTT-T----------GTTT--TTTT--A-CAGAAATTTTG-TTAA-TTA-AATTATA-AAA-C------A-T
gi|23 : gC--AATAAA-----AA--TTTACAT-GTGGCAAA---GTTCAGTTAATAT----------------TGT----C-CA---GT-CTA-AGC-Aagatttttatggaa
gi|24 : taatgatttatacgatgtaacaaattaacgagttaacaatcttgtaagtcccaatcaCA-TC-AAA--GGATT-CTGTT-TT----G-T-TG--C--TTTT--AATAGCAA-GTTG-TTTA-CTG-A--TAT--CAA-C------
gi|25 : ctaaccctcatcctaacccaTATAC-TT-CCGTTTC-TTACACATGATCTAA-GGAATACAAT-TCGT-TT-AGTAT-ACTGATAACATcat
gi|26 : agttTTATTGTG-TTTT---CATT-TTGTA---ATATAACAAAAACACACA-CATA-CAGAGAGAGAGAGA
gi|27 : ACTGTACACC------------AATCCA-----------C-AA-CTTG-------TATG-TGATGTAAC--ACCCCC
gi|3 : ATAT-CAATTGC-C-TTGA-GC-C-CTCT-CCGA--TTTTTCTGA-A--T-TTCAAAT-C-CG-ACT-TTGC-------CGAA----------------A-------T---A----------------A-G----G--TCGC-CT-AGTTTT---C-GAC--GTT-TTACTCTGAAATACACTGTACA---TGTATTTTCA-GTTTG-AATTAGAATATAA-TGTCAGAAATTCAATGGAATTTTG--AAGGCT--CATTGGCTCGAA--TTGCAATGGCTCGAA-CAC---TAAA-G-TTGCA--ATTAA-ACCATTTTTGTTG--T-CCCTT--CT-C-AG-ATTG-G-AA-CGT-ACTT-TA---AC-T-TCG--ATAG-CTCAAA-CACC---TTT------TGCTCGAACTGT-TT-T-CAATGGTCCCTT--GCTTTGACTGTACACT------------AATCCAGTTGAATCA--C-AAATTCG-------TGTG-TGATGTA-C--ACCCCACCCCCCC----C-AAACCAT-GGTATATCTGAAA-TTGAAAA-TAACTGCGTGTTTAAATACCTTTTTCCG-AATCTACCTTCA-TCA-GACA-CACTAGGct
gi|3 : -TGTGAACCCGGCCTC--CCA--GAAGCTGACG----TTGAA---------GCTTTTCTGGCCGC-AACTGT---G-ATTAT---AAT-TGTA----------CTTTCCGAATATTATGATCTCAGGATGATTTT--AANNN-NNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNNNNN---N-----TTTAC-T-GTGGCAAA--AGTTCAGTTAATAT--------------AATGT-ACAC-TA---GT-TTATAGC-ATGTT-AC-AA--AAGATATTCAGTGTA--TTTCTTTTTATTATG-TTTT---GATT-TTGCA---ATACA-------CATACA-CAGA-GAGAGAGAGAGAGAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtgaacccggcctcccagaagctgacgttgaagcttttctggccgcaactgtgattataattgtactttccgaatattatgatctcaggatgattttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttactgtggcaaaagttcagttaatataatgtacactagtttatagcatgttacaaaagatattcagtgtatttctttttattatgttttgattttgcaatacacatacacagagagagagagagagag
gi|4 : atatcaattgccttgagccctctccgatttttctgaatttcaaatccgactttgccgaaataaggtcgcctagttttcgacgttttactctgaaatacactgtacatgtattttcagtttgaattagaatataatgtcagaaattcaatggaattttgaaggctcattggctcgaattgcaatggctcgaacactaaagttgcaattaaaccatttttgttgtcccttctcagattggaacgtactttaacttcgatagctcaaacaccttttgctcgaactgttttcaatggtcccttgctttgactgtacactaatccagttgaatcacaaattcgtgtgtgatgtacaccccaccccccccaaaccatggtatatctgaaattgaaaataactgcgtgtttaaatacctttttccgaatctaccttcatcagacacactaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAT-CAATTGC-C-TTGA-GC-C-CTCT-CCGT--CTTTTCTGA-A--T-TCCAAAA-C-TG-ACT-TTGC-------CGAA----------------A-------T---AC----ATAAA-----AA-G----G--TCGC-CT-AGTTTT---C-GAG--GTT-AAACTTTTGACTAT--T-TAAAGAA-ATATTTTTA-ATTTG-AAT----------ATGTCAGAAATACAATGGAATTTCG--ATGGCT--CATTAGCTCGAA--TTGCAATGGCTCGAA-CAC-TATGAGTG-TCGCA--A-----ACCATTTT-GTTG--T-CCCTT--GT-C-GG-ACTG-G-AA-CGT-ACTA-TA---ACAT--CG--ATAG-TTCGAA-TACC-C-TCT------ATCTCGAACTGT-TT-T-CAATGGTCCCTT--GGTTTGACTGTACACC------------ATTCCA-----------C-AA-CTTG-------TATG-TGATG------ACCCCCCCCCCCC----
gi|5 : tattaaggattaacctttgtctatgttttacggtgaattcgtgttaactttacttaatttctgcagatttgattcacattaaaaagctttgcaattgttttgaatgtcaattttgtacgtagccgataatttggggtataattcttttgtattcagtggggtgtgtggtttttttttttggtttttttttcttttgatttttaggtagagttttttcacgtccctgacgcactgtcgtcaattacaatgtactagtataataatatataaagttacccactcttttcgttgaattgttttgtgcgtccgttgttaacttcgaacagctattcaagaatttttaattcgcaatatttcatgaaactttgtgtatttttatGAATG-TCGCA--A-----ACCATTTTTGT-G--T--CCTT--CT-C-AG-ATTG-G-AAATGT-ACTT-TA---AC-T-TCG--ATAG-CTCGAAACACC-C-TTT------TGCTCGAACTGT-TT-TTCAGTGG--CCTT--GCTTTGACTGTACACC------------AATCCA-----------C-AAGCTGA-------TGTG-TGATGTAACCAACCCCCCCCC-----------------------TCTGAAA-TTGAAAATTAACTGCGTG-TT-AATAC--TTTTCCG-AATTTACCTTCA-TCA-GACATCACTAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNN-NNNNN-NNNNNNNNN----------NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAA-CTCGGT------------CCTC--CCA--GAAGCTGACG----TTG-A--------AGCTTTTCCGGCCGC-AACTTT---ACATTA--------TGT----------TCTTTCCNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNN-NNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNTTAAA--TTTAC-T-GTGGCAAA--ATTTCAGTTAATAT----------------TGT-A-A--TA---GT-CTATAGC-ATGCT-AC-AAAGAAGATATTCAGTGTA--TTTCTTTTTATTATGTTTTT---GAT
gi|6 : ATATTCAAT-GC-C-TTGA-GC-C-CTCT--CGA---TTTTCTCA-A--T-TTCAAAAGCACG-ACT-TTGC-------CGAA----------------A-------T---AC----AC--ACAATTAA-G----G--TTGC-TT-AGTTTT---T-GA---GTT-TT-CTCTTGACTA-A-T-TAAAGAA---ATTATTG-GTTCG-AATTTGAATAT--ATGTCAGAAATACAAT----T--------GGCTCACATTA---CAAAATTTGCAATGTCTCGTAACAC------------------TTAG-AC---TTGAGTTG---TCTATT--CT-C-AG-ACTG-G-AA-CGT-ACCA-TA---ACC--TCG--ATAG-CTCT-A-CACCAA-TTT------AGCTCGAACTGTGTTGT-CAATGGTCACTTAGGC-TTGACTGTACACC------------AATCCA-----------CAAA-CTTGTGTGTAATGTG-TGATGCAACCAGCCACCACCCTCCATTTA-AAACCATGGGTTTATCAGAA
gi|7 : ggttagagtttttccacgtccctggtgtactccctcaattactaaacacagttgtttaagttaccccctcttttcgttgaaataatttgtgcgtccgtttgtcaacttcgagcagcatttactcaaaatcttttaattcacgaaaatggctgatattttgagtatttttgtatatttatTTACATAAAC-AAAT--T-T-GTCCAA-CCTTCCCAGGCCT--TCA-CC-AAA--GGATT-CCTTT-TT----G-T-TGTTT--TTTTT-AATAGCAATTT-G-TTTA-TTA-A--TAT--AAAAC------A-TT-ACAAGTATTCTC-TA-GA-AGACT--GTA----CACGC-CAAAGT--TTATAT----------ACATGTAC-TTTCCGTT-C-TTACACATGATCCAA-GG-ATACAATGTCGT-TTAAGTAT-G-TG-TAACATGATTATGTACCGGTATCATGTTTAAACAAT-AACTAT-GGGATA-TTACGAT-ATTCTGTGACA-A--TGA--TCTG-AA-----AA-A--GACTTGCGACTTC-T-------TTC---T-TT-CTG-TA-GGG-------TCCATAA-----TGTTTCTCTGGTCCAATTTTTAAAC-CCCGAAAAGTCCGTTGCTGAGCA--CGC--TTA---GTC--T-GGAAAC--GC-GC-AAAAAAACACGGATAGTCCGTCCCCAT-TCCACACCGTGAT-AACTAACAACAAAAACAAGAAAATGAGTTTCA-GTAT-ATATG-TTTAT--AAAT-CATGCTTGTGGTGCAGACAA-TATACAATACTCATCAAAAAGTTA-GCAGTCCAAATAATTATATTCCC
gi|8 : TTACATAAAC-AAAT--T-T-GTCCAAACCT-TCCAGGCCT--TCA-CC-AAA--GGATT-CCTTT-TT----G-T-TGTTT--TTTT--TATAGCAATTTGT-TTTA-TTA-A--TAT--AAA-C------A-ATTACAAG-ATTCTC-TA-GA-AGACT--GTA----CACGC-CAA-GT--TTATAT----------ACATGTAC-TTTC--TT-C-TTACACATGATTCAAAGG-ATACAATGTCGT-TTAAGTAT-G-TG-TAACA-GATTATGTACCG-TATCATGTGTTAACAATTACTTAT-GGGATA-TTACGAT-ATTCTGTGACA-A--TGA--TCTG-AA-----AA-A--GACTTGCGACT-CTT-------TTC---T-TT-CTG-TA-GGG-------TCCATAA-----TGTTTCTCTGGTCCAATTTTTAAAC-CCCGAAAAGTCCGTTGCTGAGCA--CGC--TTA---GTC--T-GGAAAC--GC-GCAAAAAAAACACGGATAGTCCGTCCCCAT-TCCACACCGTGAT-AACTAACAACAAAAACAAGAAAATGAGTTTCA-GTATAATATGTTTTAT--AAATACTTGCTTGTGGTGCAGACAA-TATACAATACTCATCAAAAAGTTA-GCAGTCCAAATAATTATAT--CCTCctc
gi|9 : ATAT-CAACTGC-CTTTGA-GC-CTCTCTACCGAACTTTCTCTGACATCT-CTCAAAA-C-CATACTATTGC-------CAAA----------------A-------TTACAC----A---C-----AA-ACACCG--TCGTACT-TGTTTT---CGGACTAGTTATTACTCTTGAT---ATT-CAAAGAA-ATATTTTTA-ATTTG------CAATACTACTGTCAGAA--TAACTGTA-------------C--CAT--AC----AA-TGGCA-----TCGAAACA-CTATGAA-G-------------------TTCTGTTG---TCCCTT--CTACGAG-ACTGTGTAA-CGTCACGTATA---ACC--TCGATATAGCCTCGAA-CACC-CGTTT------AGCTCGGACTGT-TT-T-CAATGATCCCTT--Gc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): ACATCTAGGGGCGGATTCAGGAATTCTGGTTTAGGGGCGGGAGTCCGAAGAACTTTATTATACTTAGATGGGCAGGGGTTGGAGGCCGCCTTAAACGTTAGTGTCCCCAGTGGTCCGTAAGGGCAGACACCCTGGTTG
Unaligned ( gi|20 ): TATTAAGCATTAAGCCCTTCATGTTGTGCTTTCTGGTGATTTTGTGTTTAACTTACATATACAGATGGTTACTTACATTAAAAAAGCTTCGTATTGCTTTTTTTGGATGTCAATTTGGTACATATTAGATAAT
Unaligned ( gi|28 ): TACCATCCAGGGGCGGATCCAGGAATTCTGGTT
Alignments
lowQualScore : 1111 1 1111111 88888888888888888888888888888888888888888888 1111 111 111111 222 1111111 111 22222222222 11 1 33333333333333333333333 3333 111 222 222 1111111 222222222222 55555555555 1 1111111 1111 222222 1 1 1 1 1 11 111 11111111111 11111 1 1 555555555555 111111 11 22 1 11111111111 2222 333333333 11111 1111 44444444444 222222222 111 4444444444444444 111 11 111 111 3333333 11 1 111 11111111 11 11 2222222222222 11 1111 2222222222 111 1 1 1 1 1111 11 1 22222 1111 3333333 11111 1 1 1 3333333 33333 1 1 11 11 111 1111 11 1 1 1 1 1 1 1 11 1 1 1
lowQualScore : 5 6666 5 5 5 5 777 0 8888 55 5 5 5 6666666 44444444444444444444444444444444444444444444 5 0000 66 5 5 888 5 222 5 4 1 111111 1 0 222 0 5 0 3333333 444 0 5 1 11 55555555555 77 1 2 2 99 2 3 77777777777777777777777 3 0 1111 66 5 5 5 111 5 5 777 888 111 66 5 0 5 111 7777777 5 5 5 77 999999999999 00000000000 5 1 2 8888888 5 0 7777 1 1 222222 0 8 1 0 3 3 0 3 99 0 0 0 22 2 444 5 77777777777 66666 5 0 0 444444444444 5 444444 5 00 0 00 0 0 0 22 88888888888 99 99 5555 999999999 6 77777 7777 6 11111111111 0 55 0 99 6 88888 1 6 5 6 77 5 77 444444444 888 555 6666666666666666 5 0 5 555 5 0 5 6 6 99 11 6 111 8 444 7777777 3 8 8 2 77 77 5 5 0 5 1 1 222 5 5 66 5 5 88888888 0 66 11 5 666 5 5 66 11 7777777777777 0 5 55 5 77 2222 5 3 99 9999999999 5 5 5 5 5 6 5 8 111 5 1 7 6 0 3 3 3 3 4444 33 0 55555 4444 2 3 3 2222222 88888 0 0 0 2222222 2 55555 0 0 3 2 33 33 777 4444 33 0 5 3 6 3 3 3 3 88 3 7 3 3 7
lowQualScore : . .... . . . . ... . .... .. . . . ....... ............................................ . .... .. . . ... . ... . . . ...... . . ... . . . ....... ... . . . .. ........... .. . . . .. . . ....................... . . .... .. . . . ... . . ... ... ... .. . . . ... ....... . . . .. ............ ........... . . . ....... . . .... . . ...... . . . . . . . . .. . . . .. . ... . ........... ..... . . . ............ . ...... . .. . .. . . . .. ........... .. .. .... ......... . ..... .... . ........... . .. . .. . ..... . . . . .. . .. ......... ... ... ................ . . . ... . . . . . .. .. . ... . ... ....... . . . . .. .. . . . . . . ... . . .. . . ........ . .. .. . ... . . .. .. ............. . . .. . .. .... . . .. .......... . . . . . . . . ... . . . . . . . . . .... .. . ..... .... . . . ....... ..... . . . ....... . ..... . . . . .. .. ... .... .. . . . . . . . . .. . . . . .
lowQualScore : 0 6666 0 0 0 0 888 0 0000 88 0 0 0 2222222 99999999999999999999999999999999999999999999 0 6666 99 0 0 888 7 111 7 9 0 444444 9 7 111 4 7 1 7777777 999 1 0 9 44 99999999999 99 0 9 9 11 3 4 99999999999999999999999 1 4 8888 99 0 0 0 222 0 0 555 888 111 99 0 1 0 666 4444444 7 7 7 99 333333333333 00000000000 7 4 7 6666666 7 1 7777 0 0 222222 6 0 0 0 2 2 0 2 55 0 0 0 55 5 777 2 22222222222 88888 8 0 0 888888888888 2 555555 2 55 8 88 8 8 0 88 66666666666 22 22 8888 777777777 7 77777 3333 7 22222222222 8 77 8 22 7 77777 0 7 7 7 22 8 99 666666666 333 000 9999999999999999 7 7 7 777 7 1 7 7 7 22 00 7 777 0 000 0000000 8 0 0 5 11 99 7 7 7 7 7 4 999 0 0 99 0 0 66666666 1 99 99 6 444 0 0 99 99 1111111111111 1 7 99 7 99 1111 7 6 22 2222222222 7 7 7 7 7 6 7 4 999 7 0 8 7 8 3 3 3 2 8888 88 0 00000 8888 5 2 2 5555555 55555 0 0 0 5555555 5 00000 5 0 2 5 88 88 555 8888 88 0 5 3 7 3 3 3 3 33 3 3 3 3 3
consensus : ATAT-CAATTGC-C-TTGA-GC-C-CTCT-CCGA--TTTTTCTGA-A--T-TTCAAAA-C-CG-ACT-TTGC-------CGAA----------------A-------T---AC----A---A-----AA-G----G--TCGC-CT-AGTTTT---C-GAC--GTT-TTACTCTTGANTACACT-TAAAGAATGTATTTTCA-GTTTG-AATTAGAATATAAATGTCAGAAATTCAATGGAATTTTG--A-GGCT--CATTGGCTCGAAA-TTGCAATGGCTCGAAACACCTATGAA-G-TCGCA--ATTAA-ACCATTTTTGTTG--TTCCCTT--CT-C-AG-ACTG-G-AA-CGT-ACTT-TA---ACCT-TCG--ATAG-CTCGAA-CACC-C-TTT------NGCTCGAACTGT-TT-T-CAATGGTCCCTT--GCTTTGACTGTACACC------------AATCCA-----------C-AA-CTCG-------TGTG-TGATGTAAC--ACCCCCNCCCCCC----C-AAACCAT-GGTATATCTGAAA-TTGAAAATTAACTGCGTG-TTAAATACCTTTTTCCG-AATCTACCTTCA-TCA-GACA-CACTAGGTGGCAGGGGCGGATCCATGATAGAACTTTGTGTTGGGGGGGG-ACGAAAATT-CCGGT-AAGGGTCTG----------AGAAGACC-GGCT-TAGAAGTCGCCCGGCGGGGTCCGGGGCGGAGC-CCCGGT-TGTGAACCCGGCCTC--CCA--GAAGCTGACG----TTGAA--------AGCTTTTCCGGCCGC-AACTGT---G-ATTAT---AAT-TGTA---------TCTTTCCGAATATTATGATCTCAGGATGATTTT--AATGT-TATAACGACGGTAGGCAAAGANTA-TGAAGCAGTT-TGTCGATGCCTTTTTATAGTTC--AATAGA---TAAA--TTTAC-T-GTGGCAAA--AGTTCAGTTAATAT--------------AATGT-ACAC-TA---GT-CTATAGC-ATGTT-AC-AA--AAGATATTCAGTGTA--TTTCTTTTTATTATG-TTTT---GATT-TTGCA---ATACA-------CATACA-CAGA-GAGAGAGAGAGAGAGACGAGAGATTACATAAACTAAAT--T-T-GTCCAA-CCT-CCCAGGCCT--TCA-CC-AAA--GGATT-CCTTT-TT----G-T-TGTTT--TTTT--AATAGCAATTTTG-TTTA-TTA-A--TAT--AAA-C------A-TTTACAAGTATTCTC-TAAGA-AGACT--GTA----CACGC-CAAAGT--TTATAT----------ACATGTAC-TTTCCGTT-C-TTACACATGATCCAA-GG-ATACAATNTCGT-TTAAGTAT-G-TG-TAACATGATTATGTACCGGTATCATGTTAAAACAAT-ACNTAT-GGGATA-TTACGAT-ATTCTGTGACA-A--TGA--TCTG-AA-----AA-A--GACTTGCGACTTCTT-------TTC---T-TT-CTG-TA-GGG-------TCCATAA-----TGTTTCTCTGGTCCGATTTTTAAAC-CCCGAAAAGTCCGTTGCTGAGCA--CGC--TTA---GTC--T-GGAAAC--GC-GCAAAAAAAACACGGATAGTCCGTCCCCAT-TCCACACCGTGAT-AACTAACAACAAAAACAAGAAAATGAGTTTCA-GTAT-ATATG-TTTAT--AAAT-CATGCTTGTGGTGCAGACAA-TATACAATACTCATCAAAAAGTTA-GCAGTCCAAATAATTATATTCCCTC
Reference ( family-783 ) : ATAT-CAATTGC-C-TTGA-GC-C-CTCT-CCGA--TTTTTCTGA-A--T-TTCAAAA-C-CG-ACT-TTGC-------CGAA----------------A-------T---AC----A---A-----AA-G----G--TCGC-CT-AGTTTT---C-GAC--GTT-TTACTCTTGANTACACT-TAAAGAATGTATTTTCA-GTTTG-AATTAGAATATAAATGTCAGAAATTCAATGGAATTTTG--A-GGCT--CATTGGCTCGAAA-TTGCAATGGCTCGAAACACCTATGAA-G-TCGCA--ATTAA-ACCATTTTTGTTG--TTCCCTT--CT-C-AG-ACTG-G-AA-CGT-ACTT-TA---ACCT-TCG--ATAG-CTCGAA-CACC-C-TTT------NGCTCGAACTGT-TT-T-CAATGGTCCCTT--GCTTTGACTGTACACC------------AATCCA-----------C-AA-CTCG-------TGTG-TGATGTAAC--ACCCCCNCCCCCC----C-AAACCAT-GGTATATCTGAAA-TTGAAAATTAACTGCGTG-TTAAATACCTTTTTCCG-AATCTACCTTCA-TCA-GACA-CACTAGGTGGCAGGGGCGGATCCATGATAGAACTTTGTGTTGGGGGGGG-ACGAAAATT-CCGGT-AAGGGTCTG----------AGAAGACC-GGCT-TAGAAGTCGCCCGGCGGGGTCCGGGGCGGAGC-CCCGGT-TGTGAACCCGGCCTC--CCA--GAAGCTGACG----TTGAA--------AGCTTTTCCGGCCGC-AACTGT---G-ATTAT---AAT-TGTA---------TCTTTCCGAATATTATGATCTCAGGATGATTTT--AATGT-TATAACGACGGTAGGCAAAGANTA-TGAAGCAGTT-TGTCGATGCCTTTTTATAGTTC--AATAGA---TAAA--TTTAC-T-GTGGCAAA--AGTTCAGTTAATAT--------------AATGT-ACAC-TA---GT-CTATAGC-ATGTT-AC-AA--AAGATATTCAGTGTA--TTTCTTTTTATTATG-TTTT---GATT-TTGCA---ATACA-------CATACA-CAGA-GAGAGAGAGAGAGAGACGAGAGATTACATAAACTAAAT--T-T-GTCCAA-CCT-CCCAGGCCT--TCA-CC-AAA--GGATT-CCTTT-TT----G-T-TGTTT--TTTT--AATAGCAATTTTG-TTTA-TTA-A--TAT--AAA-C------A-TTTACAAGTATTCTC-TAAGA-AGACT--GTA----CACGC-CAAAGT--TTATAT----------ACATGTAC-TTTCCGTT-C-TTACACATGATCCAA-GG-ATACAATNTCGT-TTAAGTAT-G-TG-TAACATGATTATGTACCGGTATCATGTTAAAACAAT-ACNTAT-GGGATA-TTACGAT-ATTCTGTGACA-A--TGA--TCTG-AA-----AA-A--GACTTGCGACTTCTT-------TTC---T-TT-CTG-TA-GGG-------TCCATAA-----TGTTTCTCTGGTCCGATTTTTAAAC-CCCGAAAAGTCCGTTGCTGAGCA--CGC--TTA---GTC--T-GGAAAC--GC-GCAAAAAAAACACGGATAGTCCGTCCCCAT-TCCACACCGTGAT-AACTAACAACAAAAACAAGAAAATGAGTTTCA-GTAT-ATATG-TTTAT--AAAT-CATGCTTGTGGTGCAGACAA-TATACAATACTCATCAAAAAGTTA-GCAGTCCAAATAATTATATTCCCTC
gi|1 : ATAT-CAATTGC----TGAAGCGC-CTCT-CCGA--TTTTTCTGA-A--TCTTCAAAT-C-CG-ACT-TTGC-------CGAA----------------A-----------------A---T-----AA-G----G--TCGC-CT-AGTTTT---C-GAC--GTT-TTACTCTGAAATACACT-GGTAGCATGTATTTTCA-GTTTGAAATTAGAATAGAAATGTCAGAAATTCAATGGAATTTTG--A--GCT--CATTGGCTCG--A-TTGCAATGGCTCGACACACCTATGAT-G-TTGCATTATTAAGACCATTTTTGTTGTTTTCCCTT--CT-C-AGTATTG-GAAA-CGT-ACTT-TAAGGACTTGTCG--ATAC-GGCGCA-CGAC-T-TTTGTGTGGCGCTCGACGTGT-TT-T-CAATGGTCCCTT--GCTTTGACTGTACACCGAATGTTCCGTGAATCCA-----------C--A-CTTG-------TGTG-TGATGTAAC--ACCCCCGCCCCCC----C-AAGCCCT-GGTATATCTGAAA-TTGAAAATT-ACTGCGTG-TTAAATACTGTGTTCCGAAATCTACCTTCAGTCAGGACA--ACTCGGTGGCAGGGGCGGATCCATAATAGAACTTTGTGTTGGGGGGGGAACGAAAATT-CCGGT-AAGGGTC-G----------AGAAGACCGGGCT-TAGAAGTCGCCCAGCGGGGTCCAGGGCAGAGCGCCGGGTGTGTGAATCCCGCCTCGGCCA--GAAGCTGACGGGT-TTGAA--------AGCTTTTCTGGCCGC-AACTGT---G-ATTAT----AT-TGTA---------TCTTTCCGAA-ATT-TGATCTCAGGATGATTTT--AATGTGTATGACGATGGTAGGCAAAGAATA-TGAAGCAGTT-TGTCGATGCTTTTTTATAGTTC--AATAGA---TAAA--TTGAC-TGGTGGCAAAGTGGTCCAGTTGATAG--------------AATGTAACAC-TAGGTGT-TAATAGCGATGTTCACAAA--AAGATATTCAGTGTAATTTTCTTTTTATTATG-TTTTGCGGATTGTTGCAAATATGCATG-----CATACAGCAGA-GA-AGAGA-AGAGAGACGAGAGATTACATAAACCAAATGGTGT-GTCCAA-CCT-TCCAGG-CT--TCA-CC-GAA--GGATT-CCTTT-TT----G-TGTGTTT--TTTT--AATAGCAATTTTGTTTTA-TTA-A--TATAAAAA-C------AGTTTACAAGTATTCTC-TAAGAGAGACT--G-A----CACGCTCAAAGT--TTATAT----------ACATGTACTTTTCCGTT-CTTTACACATGTTCCAA-GG-ATACAATGTCGTGTGAAGTATGG-TG-TAACATGATTATGTACCGGTATCATGTT-AAACAAT-AC-TATGGGGATAGTTACGATAATTCTG-GACAGA--TGA--TCTGTAA-----AA-A--GAATTGCGACTTCTT-------CTC---T-TTGCTG-TACGGG-------T-CATAAT----TGTTTCTCTGTTCC-ATTTTTAAACGCCGGAAAAGTCCGTTGCTGAG-A--CGC--TTA---GTCTGT-GAAAAC--GC-GC-AAAAAAACACGGATAGTCCGTCCCCATCTCCA-ACCGTGATAAACTAACAACAAAAACAAGAAAATGAGTTTCAGGTAT-ATATG-TTTATGAAAAT-CATGCTTGTGGTGC-GACAAGTATACAATACTCATCAAAAAGTTAGGAAGTCCAAATAATTATATTCCCTC
gi|10 : ATAT-CAATTGC-T-ATGA-AC-C-CTGT-CCGA--CTTATCTGA-A--A-TTCAAAA-C-CG-ACG-TTGCGGAGGGATGAA----------------ACTTTATTC---ACGCAAA---A-----AA-G----G--TCGT-CT-AGTTTT---
gi|11 : aaaagtactaagcacaagtataactttgtccatgtttttcgtgttaactcaacataatttctgcagattttcgatcacttaaatagattcgggaaaatatttgatacctggtggataatttcgggtattatattgtgtacatgtattcagtgagtgtttaaggttgttcacgtctcttgtgtgctcccgtcaattattgtcaaagttaacccatcttttcggtcgaggtttctgcgtccattgtcaacttcgaacagctactcaagatttcttaattctcaaaatttcatgaaacatgatttgtttgtttttcATAT-CAATTGC----TGA-GT-C-CTGT-CCGA--TTTTTCTGA-A--C-TGCAAAA-C-CG-ACG-TTGC-------CAAGGGACTGGGCTTTATTCA-------T---AC----A---A-----AACA----GATTCGT-CT-AGTTTT---C-GAG--TTT-TTACTCTTGATT--ATT-TAAAGAA---AT------GTT-----TTA-AATAT--ATGCCAGAA------------NNNN--N-NNNN--NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNN-N-NNNNN--NNNNN-NCC-TTTTTATTG---TCCCTTCACT-C-AG-ACTC-G-AA-C---AC---------CCA-TC----TAG-CTCGAA-C
gi|12 : ggtactgttgtcaacttcgtacagctattcaagatttcttaattcacaaaatttattgaaatatggtgtattttttcaTTCTGTGGCA-AAATGACATTTG-GACTACCAACATCGACTTAC-ACTTCTTCGTCCCTTTCAGTTGTT-CTGGTA-GGGGCGGCTCTCCATAAAGTGGTGCTCCTTGGGTCCGATTTTTAAAT-CCCGTAA--TGCTTTGTAGGGCACCCGCCATTGAGCGTC--TGGGGAACAAGCGGCAAAAAAt
gi|13 : atggtccggctacatatgccatgtttgtataatagtgaccataatccgtttcataaggatgattacgctacaagcactcacGCCTC--CCA--GAAGCTGACG----TTGAA---------GCATTTCCGGGCGG-AACTTTTAAGCATTTTCCAAATGTGTACACTATGATTCTTTCCAAATAT---AATCTCAGGG-GATTNN--NNNNN-NNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNNNNN---NNN---TTTAC-A-GTGACAAA--AGTCCAGTTCATATTGTACACTGTTAATAATGT-ACAC-TA---GT-CTATAGC-ATGTT-AT-AA--AAGAca
gi|14 : TGCATAA-CTAAGG--T-T-GTTAAA-CCTTCCCACGCCA---AA-TC-AAA--GGATT-CCTTT-TTTATAG-C-TATTTGTTTTT--AACAG--ATCTTA-TGGA---AGA--TAT--TAG-CCCTTGTA-TTTGCC--CATTTTA-TGATA-GGAATTCGTAATGACAT-C-CGAGGT--TTAT-----------------TAC-TTTGTGTT-C-TTACACAGGATCCAA-GA-ATAAAATCTCTT-TT-AGAAT-A-AG-TAACATGA--ATGTG--GATGT--TGTTACAACAAA-ACGTA
gi|15 : ACATAAAATACAA--T-T-GTC-AA-T-T-CCCAGGCCT--TCA-CCCAAA--GGATT-CCTTT-TTT---A-T-TATTT--TTTTTTAATAGCAATTT-G-TTTA-TTA-A--TTT--AAA-C------A-------AGTATATTCATTAGA-AGACT--GTA----CACGC-CAAAGT--ATATAT----------ACATGTAC-TTTCCATT-C-TTACACTTGATCCAA-GG-ATACAATCT---------------------CATGATTATGTACCGGTATCATGTTAAAACAAT-A
gi|16 : aTTAT---GAT-T-------------CTTTCCGAATATTATGATCTGAGGATGATTTT--AATGT-TATAACGAC-GT-----NNNNNNN-NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNNNNN---NNNN--NTTAC-C-GTGGCAAA-------AGTTAATAT----------------TGT-ACACATAG--GTACTAC-GC-ATGTA-GC-AA--AAG--------------TTT---------------TC---GATT-TTGCA---ATACA-------CA-GTA-CAGACGAGac
gi|17 : CAGGGG--GATCCATGAT------TTGTAATTGGGGGGG-G-GAAAATTATCTGC-AGGGGTCTGGATCCAGCGAAGAAGACC-TGTTGTAGGAGACG---GGTGGA---TGAGGCGAAGC-CCC----------CC---CCCC--CCGGCGAAGCTGACGGATTTTCAGTATTATTTAACTTTTCCAGTCGCAAACTGT---G-A
gi|18 : gcCAAGTATTCAC-TA-GA-AGACT--GTA----CACGC-CAACGTATTTATATGAAGATAATTACACGTAC-TTTCCGTT-C-TTACACATGATCCAA-GG-ACAAAATCTCGT-TTAAGTAT-A-TG-TAACATGATCATGTACCGGTATCATGTTAAAACAAT-A
gi|2 : ATAT-CACATGCGC-CTGA-GC-C-CTCT-CCGA--TTTTTCTGACA--T-TTCAAAT-C-CG-ACT-TTGC-------CGAA----------------A-------T---A----------------A-G----G--TCGC-CTTAGTTTTTTTC-GAC--GTT-TTACTCT-GAATACACG-TGTACA-TGTATTTTCATGTTTG-A-TTAGAATATAAATG-CAGAAATTCAATGGAATTTTGCCA-GGCT--CATTGGCTCGAA--TTGCAATGCATCGAA-CAC-TATGAA-GATTGCA--ATTAA-ACCATTTTTGTTG--T-CCCTT--CT-C-AG-ATTG---AA-CGT-ACTT-TA---ACTT-CCG--ATAG-CTCAAA-CACC---TCT------TGCTCGAACTGT-TT-T-CAATGGTCCCTT--GCTTTGACT--ACACC------------AATCCAGTGAATCACAAC-AA-TTCG-------TGTGGTGATGTA-C--AGCCCCACCCCCC----CCAAACCAT-GGTATATCTGAAAATTGAAAATTAACTGCGTG-TTAAATACCTTTTTCCG-AATCTACCTTCA-TCA-GACA-CA-TAGG---CAGGGGCGGATC----A-AAAATTTGGTGTTGGGGGG---ACGAAA-TT-CTGGTGAAGGGTCT-----------AGAA-ACC-G-CT-TA-AAGTC-CCCAGCGG--TCCAGGGCAGAGC-CCTGGT-TGTGAACCCGGCCTC--CCA--GAAGCTGACG----TTGAA---------GCTTTTCTGGCCGC-AACTGT---G-ATTAT---AAT-TGTA----------CTTTCCGAATATTATGATCTCAGGATGATTTTGTAATGT-TATAACGATG-TAGGCAAAGATTAATGAA-CAGTTGTGTCAAT--CTTTTTA-AGTTCCAAATAGA---TAAAAATTTAC-T-GTGGCAAA--AGTTCAGTTAATAT--------------AATGT-ACAC-TA---GT-TTATAGC-ATGTT-AC-AA--AAGATATTCAGTGTA--TTTCTTTTTATTATG-TTTT---GA-T-TTGCA---ATACA-------CATACA-CAGA-GAGAGAGAGAGAGAGAact
gi|21 : TTACATAAA-TGAAT--T-TGGTCCAA-CTT-CCTAGGCCTAGTCA-CC-AAA--GGATTACCTTTGTT----ATT-TGGTT--TTTT--AATAA-AATTGTG-TTTATTTA-A--TAT--AAA-------------ACGAGTATTCAC-T-AGA-AGACT--GTA----CACGC-CATAGg
gi|22 : TTACATCAAT--AAT--T-T-GCTCAA-TTT-CCCGGGCCT---CATCC-AAAACGGATT-CCTTT-T----------GTTT--TTTT--A-CAGAAATTTTG-TTAA-TTA-AATTATA-AAA-C------A-T
gi|23 : gC--AATAAA-----AA--TTTACAT-GTGGCAAA---GTTCAGTTAATAT----------------TGT----C-CA---GT-CTA-AGC-Aagatttttatggaa
gi|24 : taatgatttatacgatgtaacaaattaacgagttaacaatcttgtaagtcccaatcaCA-TC-AAA--GGATT-CTGTT-TT----G-T-TG--C--TTTT--AATAGCAA-GTTG-TTTA-CTG-A--TAT--CAA-C------
gi|25 : ctaaccctcatcctaacccaTATAC-TT-CCGTTTC-TTACACATGATCTAA-GGAATACAAT-TCGT-TT-AGTAT-ACTGATAACATcat
gi|26 : agttTTATTGTG-TTTT---CATT-TTGTA---ATATAACAAAAACACACA-CATA-CAGAGAGAGAGAGA
gi|27 : ACTGTACACC------------AATCCA-----------C-AA-CTTG-------TATG-TGATGTAAC--ACCCCC
gi|3 : ATAT-CAATTGC-C-TTGA-GC-C-CTCT-CCGA--TTTTTCTGA-A--T-TTCAAAT-C-CG-ACT-TTGC-------CGAA----------------A-------T---A----------------A-G----G--TCGC-CT-AGTTTT---C-GAC--GTT-TTACTCTGAAATACACTGTACA---TGTATTTTCA-GTTTG-AATTAGAATATAA-TGTCAGAAATTCAATGGAATTTTG--AAGGCT--CATTGGCTCGAA--TTGCAATGGCTCGAA-CAC---TAAA-G-TTGCA--ATTAA-ACCATTTTTGTTG--T-CCCTT--CT-C-AG-ATTG-G-AA-CGT-ACTT-TA---AC-T-TCG--ATAG-CTCAAA-CACC---TTT------TGCTCGAACTGT-TT-T-CAATGGTCCCTT--GCTTTGACTGTACACT------------AATCCAGTTGAATCA--C-AAATTCG-------TGTG-TGATGTA-C--ACCCCACCCCCCC----C-AAACCAT-GGTATATCTGAAA-TTGAAAA-TAACTGCGTGTTTAAATACCTTTTTCCG-AATCTACCTTCA-TCA-GACA-CACTAGGct
gi|3 : -TGTGAACCCGGCCTC--CCA--GAAGCTGACG----TTGAA---------GCTTTTCTGGCCGC-AACTGT---G-ATTAT---AAT-TGTA----------CTTTCCGAATATTATGATCTCAGGATGATTTT--AANNN-NNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNNNNN---N-----TTTAC-T-GTGGCAAA--AGTTCAGTTAATAT--------------AATGT-ACAC-TA---GT-TTATAGC-ATGTT-AC-AA--AAGATATTCAGTGTA--TTTCTTTTTATTATG-TTTT---GATT-TTGCA---ATACA-------CATACA-CAGA-GAGAGAGAGAGAGAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtgaacccggcctcccagaagctgacgttgaagcttttctggccgcaactgtgattataattgtactttccgaatattatgatctcaggatgattttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttactgtggcaaaagttcagttaatataatgtacactagtttatagcatgttacaaaagatattcagtgtatttctttttattatgttttgattttgcaatacacatacacagagagagagagagagag
gi|4 : atatcaattgccttgagccctctccgatttttctgaatttcaaatccgactttgccgaaataaggtcgcctagttttcgacgttttactctgaaatacactgtacatgtattttcagtttgaattagaatataatgtcagaaattcaatggaattttgaaggctcattggctcgaattgcaatggctcgaacactaaagttgcaattaaaccatttttgttgtcccttctcagattggaacgtactttaacttcgatagctcaaacaccttttgctcgaactgttttcaatggtcccttgctttgactgtacactaatccagttgaatcacaaattcgtgtgtgatgtacaccccaccccccccaaaccatggtatatctgaaattgaaaataactgcgtgtttaaatacctttttccgaatctaccttcatcagacacactaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAT-CAATTGC-C-TTGA-GC-C-CTCT-CCGT--CTTTTCTGA-A--T-TCCAAAA-C-TG-ACT-TTGC-------CGAA----------------A-------T---AC----ATAAA-----AA-G----G--TCGC-CT-AGTTTT---C-GAG--GTT-AAACTTTTGACTAT--T-TAAAGAA-ATATTTTTA-ATTTG-AAT----------ATGTCAGAAATACAATGGAATTTCG--ATGGCT--CATTAGCTCGAA--TTGCAATGGCTCGAA-CAC-TATGAGTG-TCGCA--A-----ACCATTTT-GTTG--T-CCCTT--GT-C-GG-ACTG-G-AA-CGT-ACTA-TA---ACAT--CG--ATAG-TTCGAA-TACC-C-TCT------ATCTCGAACTGT-TT-T-CAATGGTCCCTT--GGTTTGACTGTACACC------------ATTCCA-----------C-AA-CTTG-------TATG-TGATG------ACCCCCCCCCCCC----
gi|5 : tattaaggattaacctttgtctatgttttacggtgaattcgtgttaactttacttaatttctgcagatttgattcacattaaaaagctttgcaattgttttgaatgtcaattttgtacgtagccgataatttggggtataattcttttgtattcagtggggtgtgtggtttttttttttggtttttttttcttttgatttttaggtagagttttttcacgtccctgacgcactgtcgtcaattacaatgtactagtataataatatataaagttacccactcttttcgttgaattgttttgtgcgtccgttgttaacttcgaacagctattcaagaatttttaattcgcaatatttcatgaaactttgtgtatttttatGAATG-TCGCA--A-----ACCATTTTTGT-G--T--CCTT--CT-C-AG-ATTG-G-AAATGT-ACTT-TA---AC-T-TCG--ATAG-CTCGAAACACC-C-TTT------TGCTCGAACTGT-TT-TTCAGTGG--CCTT--GCTTTGACTGTACACC------------AATCCA-----------C-AAGCTGA-------TGTG-TGATGTAACCAACCCCCCCCC-----------------------TCTGAAA-TTGAAAATTAACTGCGTG-TT-AATAC--TTTTCCG-AATTTACCTTCA-TCA-GACATCACTAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNN-NNNNN-NNNNNNNNN----------NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAA-CTCGGT------------CCTC--CCA--GAAGCTGACG----TTG-A--------AGCTTTTCCGGCCGC-AACTTT---ACATTA--------TGT----------TCTTTCCNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNN-NNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNTTAAA--TTTAC-T-GTGGCAAA--ATTTCAGTTAATAT----------------TGT-A-A--TA---GT-CTATAGC-ATGCT-AC-AAAGAAGATATTCAGTGTA--TTTCTTTTTATTATGTTTTT---GAT
gi|6 : ATATTCAAT-GC-C-TTGA-GC-C-CTCT--CGA---TTTTCTCA-A--T-TTCAAAAGCACG-ACT-TTGC-------CGAA----------------A-------T---AC----AC--ACAATTAA-G----G--TTGC-TT-AGTTTT---T-GA---GTT-TT-CTCTTGACTA-A-T-TAAAGAA---ATTATTG-GTTCG-AATTTGAATAT--ATGTCAGAAATACAAT----T--------GGCTCACATTA---CAAAATTTGCAATGTCTCGTAACAC------------------TTAG-AC---TTGAGTTG---TCTATT--CT-C-AG-ACTG-G-AA-CGT-ACCA-TA---ACC--TCG--ATAG-CTCT-A-CACCAA-TTT------AGCTCGAACTGTGTTGT-CAATGGTCACTTAGGC-TTGACTGTACACC------------AATCCA-----------CAAA-CTTGTGTGTAATGTG-TGATGCAACCAGCCACCACCCTCCATTTA-AAACCATGGGTTTATCAGAA
gi|7 : ggttagagtttttccacgtccctggtgtactccctcaattactaaacacagttgtttaagttaccccctcttttcgttgaaataatttgtgcgtccgtttgtcaacttcgagcagcatttactcaaaatcttttaattcacgaaaatggctgatattttgagtatttttgtatatttatTTACATAAAC-AAAT--T-T-GTCCAA-CCTTCCCAGGCCT--TCA-CC-AAA--GGATT-CCTTT-TT----G-T-TGTTT--TTTTT-AATAGCAATTT-G-TTTA-TTA-A--TAT--AAAAC------A-TT-ACAAGTATTCTC-TA-GA-AGACT--GTA----CACGC-CAAAGT--TTATAT----------ACATGTAC-TTTCCGTT-C-TTACACATGATCCAA-GG-ATACAATGTCGT-TTAAGTAT-G-TG-TAACATGATTATGTACCGGTATCATGTTTAAACAAT-AACTAT-GGGATA-TTACGAT-ATTCTGTGACA-A--TGA--TCTG-AA-----AA-A--GACTTGCGACTTC-T-------TTC---T-TT-CTG-TA-GGG-------TCCATAA-----TGTTTCTCTGGTCCAATTTTTAAAC-CCCGAAAAGTCCGTTGCTGAGCA--CGC--TTA---GTC--T-GGAAAC--GC-GC-AAAAAAACACGGATAGTCCGTCCCCAT-TCCACACCGTGAT-AACTAACAACAAAAACAAGAAAATGAGTTTCA-GTAT-ATATG-TTTAT--AAAT-CATGCTTGTGGTGCAGACAA-TATACAATACTCATCAAAAAGTTA-GCAGTCCAAATAATTATATTCCC
gi|8 : TTACATAAAC-AAAT--T-T-GTCCAAACCT-TCCAGGCCT--TCA-CC-AAA--GGATT-CCTTT-TT----G-T-TGTTT--TTTT--TATAGCAATTTGT-TTTA-TTA-A--TAT--AAA-C------A-ATTACAAG-ATTCTC-TA-GA-AGACT--GTA----CACGC-CAA-GT--TTATAT----------ACATGTAC-TTTC--TT-C-TTACACATGATTCAAAGG-ATACAATGTCGT-TTAAGTAT-G-TG-TAACA-GATTATGTACCG-TATCATGTGTTAACAATTACTTAT-GGGATA-TTACGAT-ATTCTGTGACA-A--TGA--TCTG-AA-----AA-A--GACTTGCGACT-CTT-------TTC---T-TT-CTG-TA-GGG-------TCCATAA-----TGTTTCTCTGGTCCAATTTTTAAAC-CCCGAAAAGTCCGTTGCTGAGCA--CGC--TTA---GTC--T-GGAAAC--GC-GCAAAAAAAACACGGATAGTCCGTCCCCAT-TCCACACCGTGAT-AACTAACAACAAAAACAAGAAAATGAGTTTCA-GTATAATATGTTTTAT--AAATACTTGCTTGTGGTGCAGACAA-TATACAATACTCATCAAAAAGTTA-GCAGTCCAAATAATTATAT--CCTCctc
gi|9 : ATAT-CAACTGC-CTTTGA-GC-CTCTCTACCGAACTTTCTCTGACATCT-CTCAAAA-C-CATACTATTGC-------CAAA----------------A-------TTACAC----A---C-----AA-ACACCG--TCGTACT-TGTTTT---CGGACTAGTTATTACTCTTGAT---ATT-CAAAGAA-ATATTTTTA-ATTTG------CAATACTACTGTCAGAA--TAACTGTA-------------C--CAT--AC----AA-TGGCA-----TCGAAACA-CTATGAA-G-------------------TTCTGTTG---TCCCTT--CTACGAG-ACTGTGTAA-CGTCACGTATA---ACC--TCGATATAGCCTCGAA-CACC-CGTTT------AGCTCGGACTGT-TT-T-CAATGATCCCTT--Gc
blockSeqs : T GCC . . T A ACT C TCT AG A T A GGAGGGA GGACTGGGCTTTATTCATACAA C CACC AT A T TTT G CTA A T T ACACTG A TG T AATTAG AAA A T GG ATTTTGCCAG CA N N N AT N N NNNNNNNNNNNNNNNNNN A T CA A G . TGT A C GTA . CA AT C A AA T G G T AG . GTGAATCACAA A A C TGTGTAA G ACCA A C ATTTA G A A T A T A CT . . . TC C NNN C NNNNNNNNNNN NNNN A A G TGGATCCAGCGA G TGTTG G NN NN . TG TGTGAACCCG . GC GATT TATTATTTA A TAAGC CCAA G ACACTATGATT TA GT . NNNNN N A N G NN N CA NNTTAAA AT A TGTACACTGTTAATAA . A G A . . . AG . T . . . ACAAAAA T . C G CT . . G A C T AGT T C AC A G TATAGC GT TT C TA T G AT A CCCTTGTATTT A GA . TC ATGA . G AT GAAGATAATT . T . A A C . A AC A A A T G . . . T AAA CA . CTACC CATC G T T CGTCCCT AGTTG . G . GCGGCTC C AGTGG G . A C CC CA AGC TG AA G A . C . . A T . A A . . T
blockSeqs : . CTT . . . . C C A A . . . . ACTTTATTCACGCAAAA . . . . . . . G . G A ACACG T TG . AATTTG TAC A T GG ATTTTGAAG . G T A N C A TATGAAGATTGCAATTAA A T . . . . G . . TT . TT . . . CG T . . . . . GTTGAATCA . G T . . ACCA C C CC . A . T A . A CT . . . C C . N CATGAT GGG N . . NN N NNNN N G A . CG TGTGAACCCG . . . A . AC G . A TA . . NNNNN N . N . NN N . TAAAAA A A AA . . . . . . . . . . . . . . C . . G AT . . . . T T T . . . . . TAT . T A TG . . . . ACATT . TA . . . . A . . . . . . . C . A A . G A . C . . . T A . . . A G T T . T . . . . C . A . A C . . . T . . A . C . . . . . . A . . .
blockSeqs : . TA . . . . T . C A . . . . ATACACACAATT . . . . . . . C . T A ATT C AA . ATTAG AA A A GG ATTTCGATG . G T A A G A TAAAGTTGCAATTAA A T . . . . G . . TT . AT . . . C A . . . . . . . . C . . AC C C C . T . . A . . . . . . C . . AAAAAT AC . . . T . GCT . C . . C CC . . . . . G A . A TA . . NNNNN T . N . NN N . NNNN C A AA . . . . . . . . . . . . . . T . . G T . . . . T . T . . . . . ATT . . C TG . . . . CAATT . A . . . . C . . . . . . . C . A A . G A . T T A . . . A . . . . T . . . . C . A . . C . . . T . . .
blockSeqs : . CT . . . . T . T T . . . . ATACATAAA . . . . . . . C . T C ATT A AA . TTA A A A GT NNNNNN . G T A . G . TATGAGTGTCGCAA A T . . . . G . . TA . T . . . C T . . . . . . . . T . . C C T . . . . . . . . . G A . T NN . . TGTA N . N . NN N . NNN T A . . . . . . . . . . . . . . . . . . T . . . . C . T . . . . . GT . . C TG . . . . CA . A . . . . A . . . . . . . G . . G . G T .
blockSeqs : . CT . . . . T . T T . . . . ATTACACAC . . . . . . . G . T C AAT A A . AAT A . T . TG . A . A . T . CTATGAAG . T . . . . G . . TT . T . . . . A . . . . . . . . G . . C A . . . . . . G . . . . . . CGT N . . . . . . AA T . . . . . . . . . . . . C . . . . C . . . . . . . GT . . C GT . . . . . . A . . . . A . . . . . . . G . . G . . T .
blockSeqs : . CT . . . . C . T A . . . . ATA . . . . . . . . . . T ATT A A . C A . . . . . . . . . . . TTAG . T . . . . G . . CA . C . . . . A . . . . . . . . T . . . . N T . . . . . . . C . . . . . . . . . . . . GT . . . G . . . . . A . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . T A . . . . ATA . . . . . . . T . . . . . . . . . C . . . . . . . . . . . . G . . . .
blockSeqCons : CT** T*** ATT*** NG* AATTAG* AA* ATTTTGG**** A* TATGAAGTCGCATAA******** T*** G** *** C** N****** ************ ACCA ****** CC********* ** **** ********* A*** A********** TA AA******* T** A** AA************** *** ** *** *** ******* C* ** GT****** TG* ** CATT********* A* G**
originalCons : ATAT-CAATTGC-C-TTGA-GC-C-CTCT-CCGA--TTTTTCTGA-A--T-TTCAAAA-C-CG-ACT-TTGC-------CGAA----------------A-------T---AC----A---A-----AA-G----G--TCGC-CT-AGTTTT---C-GAC--GTT-TTACTCTTGANTACACT-TAAAGAATGTATTTTCA-GTTTG-AATTAGAATATAAATGTCAGAAATTCAATGGAATTTTG--A-GGCT--CATTGGCTCGAAA-TTGCAATGGCTCGAAACACCTATGAA-G-TCGCA--ATTAA-ACCATTTTTGTTG--TTCCCTT--CT-C-AG-ACTG-G-AA-CGT-ACTT-TA---ACCT-TCG--ATAG-CTCGAA-CACC-C-TTT------NGCTCGAACTGT-TT-T-CAATGGTCCCTT--GCTTTGACTGTACACC------------AATCCA-----------C-AA-CTCG-------TGTG-TGATGTAAC--ACCCCCNCCCCCC----C-AAACCAT-GGTATATCTGAAA-TTGAAAATTAACTGCGTG-TTAAATACCTTTTTCCG-AATCTACCTTCA-TCA-GACA-CACTAGGTGGCAGGGGCGGATCCATGATAGAACTTTGTGTTGGGGGGGG-ACGAAAATT-CCGGT-AAGGGTCTG----------AGAAGACC-GGCT-TAGAAGTCGCCCGGCGGGGTCCGGGGCGGAGC-CCCGGT-TGTGAACCCGGCCTC--CCA--GAAGCTGACG----TTGAA--------AGCTTTTCCGGCCGC-AACTGT---G-ATTAT---AAT-TGTA---------TCTTTCCGAATATTATGATCTCAGGATGATTTT--AATGT-TATAACGACGGTAGGCAAAGANTA-TGAAGCAGTT-TGTCGATGCCTTTTTATAGTTC--AATAGA---TAAA--TTTAC-T-GTGGCAAA--AGTTCAGTTAATAT--------------AATGT-ACAC-TA---GT-CTATAGC-ATGTT-AC-AA--AAGATATTCAGTGTA--TTTCTTTTTATTATG-TTTT---GATT-TTGCA---ATACA-------CATACA-CAGA-GAGAGAGAGAGAGAGACGAGAGATTACATAAACTAAAT--T-T-GTCCAA-CCT-CCCAGGCCT--TCA-CC-AAA--GGATT-CCTTT-TT----G-T-TGTTT--TTTT--AATAGCAATTTTG-TTTA-TTA-A--TAT--AAA-C------A-TTTACAAGTATTCTC-TAAGA-AGACT--GTA----CACGC-CAAAGT--TTATAT----------ACATGTAC-TTTCCGTT-C-TTACACATGATCCAA-GG-ATACAATNTCGT-TTAAGTAT-G-TG-TAACATGATTATGTACCGGTATCATGTTAAAACAAT-ACNTAT-GGGATA-TTACGAT-ATTCTGTGACA-A--TGA--TCTG-AA-----AA-A--GACTTGCGACTTCTT-------TTC---T-TT-CTG-TA-GGG-------TCCATAA-----TGTTTCTCTGGTCCGATTTTTAAAC-CCCGAAAAGTCCGTTGCTGAGCA--CGC--TTA---GTC--T-GGAAAC--GC-GCAAAAAAAACACGGATAGTCCGTCCCCAT-TCCACACCGTGAT-AACTAACAACAAAAACAAGAAAATGAGTTTCA-GTAT-ATATG-TTTAT--AAAT-CATGCTTGTGGTGCAGACAA-TATACAATACTCATCAAAAAGTTA-GCAGTCCAAATAATTATATTCCCTC
finalCons : ATAT-CAATTGCCT--TGA-GC-C-CTCT-CCGA--TTTTTCTGA-AT---TTCAAAA-C-CG-ACT-TTGC-------CGAA----------------A-------T---AC----A---A-----AA-G----G--TCGC-CT-AGTTTT---C-GAC--GTT-TTACTCTTGANTATT---TAAAGANG-TATTTTCA-GTTTGAATTAG-AATATAA-TGTCAGAAATTCAATGGAATTTTGG----GCT--CATTGGCTCGAAA-TTGCAATGGCTCGAAACACTATGAAGTCGCATAA--------ACCATTTTTGTTGT---CCCTT--CT-C-AG-ACTGG--AA-CGT-ACTT-TA---ACC--TCG--ATAG-CTCGAA-CACC-C-TTTN------GCTCGAACTGT-TT-T-CAATGGTCCCTT--GCTTTGACTGTACACC------------AATCCA-----------C-AA-CTCG-------TGTG-TGATGTAACCAACCCCCNCCCCCC------AAACCAT-GGTATATCTGAAA-TTGAAAATTAACTGCGTG-TTAAATACCTTTTTCCG-AATCTACCTTCA-TCA-GACA-CACTAGGTGGCAGGGGCGGATCCATGATAGAACTTTGTGTTGGGGGGGG-ACGAAAATT-CCGGT-AAGGGTCTG----------AGAAGACC-GGCT-TAGAAGTCGCCCGGCGGGGTCCGGGGCGGAGC-CCCGGTCC---------GCCTC--CCA--GAAGCTGACG----TTGAA---------GCTTTTCCGGCCGC-AACTGT---G-ATTATA---AT-TGTA----------CTTTCCGAATATTATGATCTCAGGATGATTTT--AATGT-TATAACGACGGTAGGCAAAGANTA-TGAAGCAGTT-TGTCGATGCCTTTTTATAGTTC--AATAGAAA-------TTTACT--GTGGCAAAA--GTTCAGTTAATATAA--------------TGT-ACAC-TA---GT-CTATAGC-ATGTT-AC-AA--AAGATATTCAGTGTA--TTTCTTTTTATTATG-TTTT---GATT-TTGCA---ATACA-------CATACA-CAGA-GAGAGAGAGAGAGAGACGAGAGATTACATAAAC-AAAT--T-T-GTCCAA-CCT-CCCAGGCCT--TCA-CC-AAA--GGATT-CCTTT-TTGT------TGTTT--TTTT--AATAGCAATTTTG-TTTA-TTA-A--TAT--AAACATT---------ACAAGTATTCTC-TA-GA-AGACT--GTA----CACGC-CAAAGT--TTATAT----------ACATGTAC-TTTCCGTT-C-TTACACATGATCCAA-GG-ATACAATNTCGT-TTAAGTATG--TG-TAACATGATTATGTACCGGTATCATGTTAAAACAAT-ACNTAT-GGGATA-TTACGAT-ATTCTGTGACA-A--TGA--TCTG-AA-----AA-A--GACTTGCGACTTCTT-------TTC---T-TT-CTG-TA-GGG-------TCCATAA-----TGTTTCTCTGGTCCGATTTTTAAAC-CCCGAAAAGTCCGTTGCTGAGCA--CGC--TTA---GTC--T-GGAAAC--GC-GCAAAAAAAACACGGATAGTCCGTCCCCAT-TCCACACCGTGAT-AACTAACAACAAAAACAAGAAAATGAGTTTCA-GTAT-ATATG-TTTAT--AAAT-CATGCTTGTGGTGCAGACAA-TATACAATACTCATCAAAAAGTTA-GCAGTCCAAATAATTATATTCCCTC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): ACATCTAGGGGCGGATTCAGGAATTCTGGTTTAGGGGCGGGAGTCCGAAGAACTTTATTATACTTAGATGGGCAGGGGTTGGAGGCCGCCTTAAACGTTAGTGTCCCCAGTGGTCCGTAAGGGCAGACACCCTGGTTG
Unaligned ( gi|20 ): TATTAAGCATTAAGCCCTTCATGTTGTGCTTTCTGGTGATTTTGTGTTTAACTTACATATACAGATGGTTACTTACATTAAAAAAGCTTCGTATTGCTTTTTTTGGATGTCAATTTGGTACATATTAGATAAT
Unaligned ( gi|28 ): TACCATCCAGGGGCGGATCCAGGAATTCTGGTT
Alignments
lowQualScore : 1111 1 1111111 888888888888888888888888888888888888888888 1111 111 222 111111 11111 222 1 1 5555555555555555555 111 111 222 1111111 222222222222 55555555555 1 1111111 1111 11111 1 11 1 1 1 11 1111 11111111111 11111 444444444444 111111 11 8888888888888888888888 2222 222222222 444444444444444444 111 1111 2222222222 111 44444444444444444 111 11 111 111 3333333 111 1111 1 111 1 1111 11 11 111 222222222 1111 2222222222 111 1 1 1 1 1111 11 1 22222 1111 3333333 11111 1 1 1 3333333 33333 1 1 11 11 111 1111 11 1 1 1 1 1 1 1 11 1 1 1
lowQualScore : 5 6666 5 5 5 5 66 0 8888 55 5 5 5 6666666 444444444444444444444444444444444444444444 5 0000 66 5 5 888 5 222 5 4 6 222 2 5 55 666 999999 77777 0 2 555 2 77 1 2 2 3 5 2 3 5 2 4444444444444444444 2 0 888 66 5 5 5 111 5 5 55 888 444 8888 5 0 5 111 7777777 5 5 5 77 999999999999 00000000000 5 1 2 8888888 5 0 8888 5 66 1 66666 0 8 1 0 66 33 99 0 0 0 22 2 5555 4 66666666666 0 44444 4 8 8 444444444444 4 222222 4 0 88 0 77 0 3 7777777777777777777777 99 99 5555 6 666666666 999999999999999999 6 888 8 5555 9 0 0 6 99 6 88888 1 6 5 6 77 5 77 9999999999 0 888 555 11111111111111111 5 0 5 555 5 0 5 6 6 99 11 6 111 8 444 7777777 3 8 8 2 555 2222 5 5 0 5 1 1 222 0 66 5 5 5 0000 5 5 777 66 5 5 9 5 5 66 66 1 33 000 77 77 4 222222222 5 5 2222 5 3 99 9999999999 5 5 5 5 5 6 5 8 111 5 1 7 6 0 3 3 3 3 4444 33 0 55555 4444 2 3 3 2222222 88888 0 0 0 2222222 2 55555 0 0 3 2 33 33 777 4444 33 0 5 3 6 3 3 3 3 88 3 7 3 3 7
lowQualScore : . .... . . . . .. . .... .. . . . ....... .......................................... . .... .. . . ... . ... . . . ... . . .. ... ...... ..... . . ... . .. . . . . . . . . . ................... . . ... .. . . . ... . . .. ... ... .... . . . ... ....... . . . .. ............ ........... . . . ....... . . .... . .. . ..... . . . . .. .. .. . . . .. . .... . ........... . ..... . . . ............ . ...... . . .. . .. . . ...................... .. .. .... . ......... .................. . ... . .... . . . . .. . ..... . . . . .. . .. .......... . ... ... ................. . . . ... . . . . . .. .. . ... . ... ....... . . . . ... .... . . . . . . ... . .. . . . .... . . ... .. . . . . . .. .. . .. ... .. .. . ......... . . .... . . .. .......... . . . . . . . . ... . . . . . . . . . .... .. . ..... .... . . . ....... ..... . . . ....... . ..... . . . . .. .. ... .... .. . . . . . . . . .. . . . . .
lowQualScore : 0 6666 0 0 0 0 99 0 0000 88 0 0 0 2222222 999999999999999999999999999999999999999999 0 6666 99 0 0 888 7 111 7 9 6 666 1 7 00 333 777777 99999 1 9 777 3 99 0 9 9 4 7 3 4 7 9 6666666666666666666 5 4 888 99 0 0 0 222 0 0 55 888 999 1111 0 1 0 666 4444444 7 7 7 99 333333333333 00000000000 7 4 7 6666666 7 1 3333 7 77 0 77777 6 0 0 0 55 22 55 0 0 0 55 5 0000 4 00000000000 2 22222 8 0 0 222222222222 4 444444 4 2 88 8 00 8 2 9999999999999999999999 22 22 8888 7 777777777 222222222222222222 7 333 2 7777 0 8 8 7 22 7 77777 0 7 7 7 22 8 99 6666666666 9 333 000 33333333333333333 7 7 7 777 7 1 7 7 7 22 00 7 777 0 000 0000000 8 0 0 5 777 9999 7 7 7 7 7 4 999 0 99 0 0 0 6666 0 0 000 99 0 6 4 0 0 99 99 4 66 000 99 99 3 999999999 7 7 1111 7 6 22 2222222222 7 7 7 7 7 6 7 4 999 7 0 8 7 8 3 3 3 2 8888 88 0 00000 8888 5 2 2 5555555 55555 0 0 0 5555555 5 00000 5 0 2 5 88 88 555 8888 88 0 5 3 7 3 3 3 3 33 3 3 3 3 3
consensus : ATAT-CAATTGC-C-TTGA-GC-C-CTCT-CCGA--TTTTTCTGA-A--T-TTCAAAA-C-CG-ACT-TTGC-------CGAA----------------A-------T---AC----A----A--AA-G----G--TCGC-CT-AGTTTT---C-GAC--GTT-TTACTCTTGANTACA-TTGNAG-ANGTATTTTCA-GTTTGAA-TTAGAATA-TAA-TGTCAGAAATTCAATGGAATTTTG---GGCTCA--TTGGCTCGAAATT-GCAATGGCTCGAAACA-CTATGAA-G-TCGCA--T-----AAACCATTTTTGTTG---TCCCTT--CT-C-AG-ACTG-G-AA-CGT-ACTT-TA---ACC--TC-G--ATAG-CTCGAA-CACC-C-TTT------NGCTCGAACTGT-TT-T-CAATGGTCCCTT--GCTTTGACTGTACACC------------AATCCA-----------C-AA-CTCG-------TGTG-TGATGTAACCAACCCC-C-CCCCCCC-----AAACCAT-GGTATATCTGAAA-TTGAAAATTAACTGCGTGTT-AAATACCTTTTTCCG-AATCTACCTTCA-TCA-GACA-CACTAGGTGGCAGGGGCGGATCCATGATAGAACTTTGTGTTGGGGGGGG-ACGAAAATT-CCGGT-AAGGGTCTG----------AGAAGACC-GGCT-TAGAAGTCGCCCGGCGGGGTCCGGGGCGGAGCCCCGG----------T-------CCG-CCTC--CCA--GAAGCTGACG----TTG-A---------AGCTTTTCCGGCCG------------------C-AACTGTG---ATTATGATTGTA-CTTTCCGAATATTATGATCTCAGGATGATT-TT--AATGT-TATAACGACGGTAGGCAAAGANTA-TGAAGCAGTT-TGTCGATGCCTTTTTATAGTTC--AATAG-----A----AATTTAC-T-GTGGCAAA--AGTTCAGTTAATA--------------TAATGT-ACAC-TA---GT-CTATAGC-ATGTT-AC-AA--AAGATATTCAGTGTA--TTTCTTTTTATTATG-TTTT---GATT-TTGCA---ATACA-------CATACA-CAGA-GAGAGAGAGAGAGAGACGAGAGATTACATAAA---CAAAT--T-TG-TCCAA-CCT-CCCAGGCCT--TCA-CCAAA--GGATT-CC-TTT-TT----GT-T-G--TTT--T-TTTAATAGCAATTTTG-TTTATT-AA--TATA-AAACA--TTA---CAAG--TATT--CNC---------T-AGA-AGACTGTA----CACGC-CAAAGT--TTATAT----------ACATGTAC-TTTCCGTT-C-TTACACATGATCCAA-GG-ATACAATNTCGT-TTAAGTAT-G-TG-TAACATGATTATGTACCGGTATCATGTTAAAACAAT-ACNTAT-GGGATA-TTACGAT-ATTCTGTGACA-A--TGA--TCTG-AA-----AA-A--GACTTGCGACTTCTT-------TTC---T-TT-CTG-TA-GGG-------TCCATAA-----TGTTTCTCTGGTCCGATTTTTAAAC-CCCGAAAAGTCCGTTGCTGAGCA--CGC--TTA---GTC--T-GGAAAC--GC-GCAAAAAAAACACGGATAGTCCGTCCCCAT-TCCACACCGTGAT-AACTAACAACAAAAACAAGAAAATGAGTTTCA-GTAT-ATATG-TTTAT--AAAT-CATGCTTGTGGTGCAGACAA-TATACAATACTCATCAAAAAGTTA-GCAGTCCAAATAATTATATTCCCTC
Reference ( family-783 ) : ATAT-CAATTGC-C-TTGA-GC-C-CTCT-CCGA--TTTTTCTGA-A--T-TTCAAAA-C-CG-ACT-TTGC-------CGAA----------------A-------T---AC----A----A--AA-G----G--TCGC-CT-AGTTTT---C-GAC--GTT-TTACTCTTGANTAT--TTAAAG-ANGTATTTTCA-GTTTGAA-TTAGAATA-TAA-TGTCAGAAATTCAATGGAATTTTG---GGCTCA--TTGGCTCGAAATT-GCAATGGCTCGAAACA-CTATGAA-G-TCGCA--T-----AAACCATTTTTGTTG---TCCCTT--CT-C-AG-ACTG-G-AA-CGT-ACTT-TA---ACC--TC-G--ATAG-CTCGAA-CACC-C-TTT------NGCTCGAACTGT-TT-T-CAATGGTCCCTT--GCTTTGACTGTACACC------------AATCCA-----------C-AA-CTCG-------TGTG-TGATGTAACCAACCCC-C-NCCCCCC-----AAACCAT-GGTATATCTGAAA-TTGAAAATTAACTGCGTGTT-AAATACCTTTTTCCG-AATCTACCTTCA-TCA-GACA-CACTAGGTGGCAGGGGCGGATCCATGATAGAACTTTGTGTTGGGGGGGG-ACGAAAATT-CCGGT-AAGGGTCTG----------AGAAGACC-GGCT-TAGAAGTCGCCCGGCGGGGTCCGGGGCGGAGCCCCGG----------T-------CCG-CCTC--CCA--GAAGCTGACG----TTG-A---------AGCTTTTCCGGCCG------------------C-AACTGTG---ATTATAATTGTA-CTTTCCGAATATTATGATCTCAGGATGATT-TT--AATGT-TATAACGACGGTAGGCAAAGANTA-TGAAGCAGTT-TGTCGATGCCTTTTTATAGTTC--AATAG-----A----AATTTAC-T-GTGGCAAA--AGTTCAGTTAATA--------------TAATGT-ACAC-TA---GT-CTATAGC-ATGTT-AC-AA--AAGATATTCAGTGTA--TTTCTTTTTATTATG-TTTT---GATT-TTGCA---ATACA-------CATACA-CAGA-GAGAGAGAGAGAGAGACGAGAGATTACATAAA---CAAAT--T-TG-TCCAA-CCT-CCCAGGCCT--TCA-CCAAA--GGATT-CC-TTT-TT----GT-T-G--TTT--T-TTTAATAGCAATTTTG-TTTATT-AA--TAT--AAACA--TTA---CAAG--TATT--CTC---------T-AGA-AGACTGTA----CACGC-CAAAGT--TTATAT----------ACATGTAC-TTTCCGTT-C-TTACACATGATCCAA-GG-ATACAATNTCGT-TTAAGTAT-G-TG-TAACATGATTATGTACCGGTATCATGTTAAAACAAT-ACNTAT-GGGATA-TTACGAT-ATTCTGTGACA-A--TGA--TCTG-AA-----AA-A--GACTTGCGACTTCTT-------TTC---T-TT-CTG-TA-GGG-------TCCATAA-----TGTTTCTCTGGTCCGATTTTTAAAC-CCCGAAAAGTCCGTTGCTGAGCA--CGC--TTA---GTC--T-GGAAAC--GC-GCAAAAAAAACACGGATAGTCCGTCCCCAT-TCCACACCGTGAT-AACTAACAACAAAAACAAGAAAATGAGTTTCA-GTAT-ATATG-TTTAT--AAAT-CATGCTTGTGGTGCAGACAA-TATACAATACTCATCAAAAAGTTA-GCAGTCCAAATAATTATATTCCCTC
gi|1 : ATAT-CAATTGC----TGAAGCGC-CTCT-CCGA--TTTTTCTGA-A--TCTTCAAAT-C-CG-ACT-TTGC-------CGAA----------------A-----------------A----T--AA-G----G--TCGC-CT-AGTTTT---C-GAC--GTT-TTACTCTGAAATACACTGGTAGCATGTATTTTCA-GTTTGAAATTAGAATA-GAAATGTCAGAAATTCAATGGAATTTTG---AGCTCA--TTGGCTCG--ATT-GCAATGGCTCGACACACCTATGAT-G-TTGCA--TTATTAAGACCATTTTTGTTGTTTTCCCTT--CT-C-AGTATTG-GAAA-CGT-ACTT-TAAGGACTTGTC-G--ATAC-GGCGCA-CGAC-T-TTTGTGTGGCGCTCGACGTGT-TT-T-CAATGGTCCCTT--GCTTTGACTGTACACCGAATGTTCCGTGAATCCA-----------C--A-CTTG-------TGTG-TGATGTAAC--ACCCC-CGCCCCCCC-----AAGCCCT-GGTATATCTGAAA-TTGAAAATT-ACTGCGTGTT-AAATACTGTGTTCCGAAATCTACCTTCAGTCAGGACA--ACTCGGTGGCAGGGGCGGATCCATAATAGAACTTTGTGTTGGGGGGGGAACGAAAATT-CCGGT-AAGGGTC-G----------AGAAGACCGGGCT-TAGAAGTCGCCCAGCGGGGTCCAGGGCAGAGCGCCGGGTGTGTGAATC-------CCG-CCTCGGCCA--GAAGCTGACGGGT-TTGAA---------AGCTTTTCTGGCCG------------------C-AACTGTG---ATTAT-ATTGTATCTTTCCGAA-ATT-TGATCTCAGGATGATT-TT--AATGTGTATGACGATGGTAGGCAAAGAATA-TGAAGCAGTT-TGTCGATGCTTTTTTATAGTTC--AATAGAT---A----AATTGAC-TGGTGGCAAAGTGGTCCAGTTGATA--------------GAATGTAACAC-TAGGTGT-TAATAGCGATGTTCACAAA--AAGATATTCAGTGTAATTTTCTTTTTATTATG-TTTTGCGGATTGTTGCAAATATGCATG-----CATACAGCAGA-GA-AGAGA-AGAGAGACGAGAGATTACATAAAC--CAAATGGTGTG-TCCAA-CCT-TCCAGG-CT--TCA-CCGAA--GGATT-CC-TTT-TT----GTGT-G--TTT--T-TTTAATAGCAATTTTGTTTTATT-AA--TATAAAAACAGTTTA---CAAG--TATT--CTC---------TAAGAGAGACTG-A----CACGCTCAAAGT--TTATAT----------ACATGTACTTTTCCGTT-CTTTACACATGTTCCAA-GG-ATACAATGTCGTGTGAAGTATGG-TG-TAACATGATTATGTACCGGTATCATGTT-AAACAAT-AC-TATGGGGATAGTTACGATAATTCTG-GACAGA--TGA--TCTGTAA-----AA-A--GAATTGCGACTTCTT-------CTC---T-TTGCTG-TACGGG-------T-CATAAT----TGTTTCTCTGTTCC-ATTTTTAAACGCCGGAAAAGTCCGTTGCTGAG-A--CGC--TTA---GTCTGT-GAAAAC--GC-GC-AAAAAAACACGGATAGTCCGTCCCCATCTCCA-ACCGTGATAAACTAACAACAAAAACAAGAAAATGAGTTTCAGGTAT-ATATG-TTTATGAAAAT-CATGCTTGTGGTGC-GACAAGTATACAATACTCATCAAAAAGTTAGGAAGTCCAAATAATTATATTCCCTC
gi|10 : ATAT-CAATTGC-T-ATGA-AC-C-CTGT-CCGA--CTTATCTGA-A--A-TTCAAAA-C-CG-ACG-TTGCGGAGGGATGAA----------------ACTTTATTC---ACGCAAA----A--AA-G----G--TCGT-CT-AGTTTT---
gi|11 : aaaagtactaagcacaagtataactttgtccatgtttttcgtgttaactcaacataatttctgcagattttcgatcacttaaatagattcgggaaaatatttgatacctggtggataatttcgggtattatattgtgtacatgtattcagtgagtgtttaaggttgttcacgtctcttgtgtgctcccgtcaattattgtcaaagttaacccatcttttcggtcgaggtttctgcgtccattgtcaacttcgaacagctactcaagatttcttaattctcaaaatttcatgaaacatgatttgtttgtttttcATAT-CAATTGC----TGA-GT-C-CTGT-CCGA--TTTTTCTGA-A--C-TGCAAAA-C-CG-ACG-TTGC-------CAAGGGACTGGGCTTTATTCA-------T---AC----A----A--AACA----GATTCGT-CT-AGTTTT---C-GAG--TTT-TTACTCTTGATTAT--TTAAAG-AAATGTTTT--------------AAATA-T-A-TGCCAGAANNNNNNNNNNNNNNNN---NNNNNN--NNNNNNNNNNNNN-NNNNNNNNNNNNNNNN-NNNNNNN-N-NC-C---------------TTTTTATTG---TCCCTTCACT-C-AG-ACTC-G-AA-C-------------ACCCATC-----TAG-CTCGAA-C
gi|12 : ggtactgttgtcaacttcgtacagctattcaagatttcttaattcacaaaatttattgaaatatggtgtattttttcaTTCTGTGGCA-AAATGACATTTG-GACTACCAACATCGACTTAC-ACTTCTTCGTCCCTTTCAGTTGTT-CTGGTA-GGGGCGGCTCTCCATAAAGTGGTGCTCCTTGGGTCCGATTTTTAAAT-CCCGTAA--TGCTTTGTAGGGCACCCGCCATTGAGCGTC--TGGGGAACAAGCGGCAAAAAAt
gi|13 : atggtccggctacatatgccatgtttgtataatagtgaccataatccgtttcataaggatgattacgctacaagcactcacG-CCTC--CCA--GAAGCTGACG----TTG-A---------AGCATTTCCGGGCGGAACTTTTAAGCATTTTCC-AAATGTGTACACTATGATT----CTTTCCAAA---TATAATCTCAGGG-GATTNNN--NNNNN-NNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNNNN-----N----NNTTTAC-A-GTGACAAA--AGTCCAGTTCATATTGTACACTGTTAATAATGT-ACAC-TA---GT-CTATAGC-ATGTT-AT-AA--AAGAca
gi|14 : TGCATAAC---TAAGG--T-TG-TTAAA-CCTTCCCACGCCA---AA-TCAAA--GGATT-CC-TTT-TTTATAGC-T-A--TTTGTT-TTTAACAG--ATCTT-----ATG-GA-------AGATA--TTAGCCCTTG--TATTTGCCCATTTTATGAT-AGG-AATTCGTAATGACAT-C-CGAGGT--TTAT-----------------TAC-TTTGTGTT-C-TTACACAGGATCCAA-GA-ATAAAATCTCTT-TT-AGAAT-A-AG-TAACATGA--ATGTG--GATGT--TGTTACAACAAA-ACGTA
gi|15 : ACATAAAATACAA----T-TG-TC-AA-T-T-CCCAGGCCT--TCACCCAAA--GGATT-CCTTTT-TT----AT-T-ATTTTT--T-TTTAATAGCAA-TTTG-TTTATT-AA--TTT--AA-------A---CAAGTATATT--CAT---------T-AGA-AGACTGTA----CACGC-CAAAGT--ATATAT----------ACATGTAC-TTTCCATT-C-TTACACTTGATCCAA-GG-ATACAATCT---------------------CATGATTATGTACCGGTATCATGTTAAAACAAT-A
gi|16 : aTTATGATT----CTTTCCGAATATTATGATCTGAGGATGATT-TT--AATGT-TATAACGAC-GT---NNNNNNNNN-NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNNNN-----N----NNNTTAC-C-GTGGCAAA-------AGTTAATA--------------T--TGT-ACACATAG--GTACTAC-GC-ATGTA-GC-AA--AAG--------------TTT---------------TC---GATT-TTGCA---ATACA-------CA-GTA-CAGACGAGac
gi|17 : CAGGGG--GATCCATGAT------TTGTAATTGGGGGGG-G-GAAAATTATCTGC-AGGGGTCTGGATCCAGCGAAGAAGACC-TGTTGTAGGAGACG---GGTGGA---TGAGGCGAAGCCCC--------------------CC--CCCC--CCGGCGAAGCTGACGGATTTTC-AGTATTATTTAACTTTTCCAGTCG------------------CAAACTGTG---A
gi|18 : gc---CAAG--TATT--CAC---------T-AGA-AGACTGTA----CACGC-CAACGTATTTATATGAAGATAATTACACGTAC-TTTCCGTT-C-TTACACATGATCCAA-GG-ACAAAATCTCGT-TTAAGTAT-A-TG-TAACATGATCATGTACCGGTATCATGTTAAAACAAT-A
gi|2 : ATAT-CACATGCGC-CTGA-GC-C-CTCT-CCGA--TTTTTCTGACA--T-TTCAAAT-C-CG-ACT-TTGC-------CGAA----------------A-------T---A--------------A-G----G--TCGC-CTTAGTTTTTTTC-GAC--GTT-TTACTCT-GAATACACGTGTAC-ATGTATTTTCATGTTTGA--TTAGAATA-TAAATG-CAGAAATTCAATGGAATTTTGCCAGGCTCA--TTGGCTCGAA-TT-GCAATGCATCGAA-CA-CTATGAA-GATTGCAATT-----AAACCATTTTTGTTG---TCCCTT--CT-C-AG-ATTG---AA-CGT-ACTT-TA---ACT--TCCG--ATAG-CTCAAA-CACC---TCT------TGCTCGAACTGT-TT-T-CAATGGTCCCTT--GCTTTGACT--ACACC------------AATCCAGTGAATCACAAC-AA-TTCG-------TGTGGTGATGTA--CAGCCCCAC-CCCCCCC-----AAACCAT-GGTATATCTGAAAATTGAAAATTAACTGCGTGTT-AAATACCTTTTTCCG-AATCTACCTTCA-TCA-GACA-CA-TAGG---CAGGGGCGGATC----A-AAAATTTGGTGTTGGGGGG---ACGAAA-TT-CTGGTGAAGGGTCT-----------AGAA-ACC-G-CT-TA-AAGTC-CCCAGCGG--TCCAGGGCAGAGCCCTGG----------TTGTGAACCCGGCCTC--CCA--GAAGCTGACG----TTG-A---------AGCTTTTCTGGCCG------------------C-AACTGTG---ATTATAATTGTA-CTTTCCGAATATTATGATCTCAGGATGATT-TTGTAATGT-TATAACGATG-TAGGCAAAGATTAATGAA-CAGTTGTGTCAAT--CTTTTTA-AGTTCCAAATAG-----ATAAAAATTTAC-T-GTGGCAAA--AGTTCAGTTAATA--------------TAATGT-ACAC-TA---GT-TTATAGC-ATGTT-AC-AA--AAGATATTCAGTGTA--TTTCTTTTTATTATG-TTTT---GA-T-TTGCA---ATACA-------CATACA-CAGA-GAGAGAGAGAGAGAGAact
gi|21 : TTACATAAA---TGAAT--T-TGGTCCAA-CTT-CCTAGGCCTAGTCA-CCAAA--GGATTACC-TTTGTT----AT-TTG--GTT--T-TTTAATAA-AATTGTG-TTTATTTAA--TAT--AAA------A---CGAG--TATT--CAC---------T-AGA-AGACTGTA----CACGC-CATAGg
gi|22 : TTACATCAA---TAA-T--T-TG-CTCAA-TTT-CCCGGGCCT---CATCCAAAACGGATT-CC-TTT-T----------G--TTT--T-TTTA-CAGAAATTTTG-TTAATT-AAATTATA-AAACA--T
gi|23 : gC--AATAA-----A----AATTTACAT-GTGGCAAA---GTTCAGTTAATA--------------T--TGT----C-CA---GT-CTA-AGC-Aagatttttatggaa
gi|24 : taatgatttatacgatgtaacaaattaacgagttaacaatcttgtaagtcccaatcaCA-TCAAA--GGATT-CT-GTT-TT----GT-T-G----C--T-TTTAATAGCAA-GTTG-TTTACT-GA--TAT--CAAC
gi|25 : ctaaccctcatcctaacccaTATAC-TT-CCGTTTC-TTACACATGATCTAA-GGAATACAAT-TCGT-TT-AGTAT-ACTGATAACATcat
gi|26 : agttTTATTGTG-TTTT---CATT-TTGTA---ATATAACAAAAACACACA-CATA-CAGAGAGAGAGAGA
gi|27 : ACTGTACACC------------AATCCA-----------C-AA-CTTG-------TATG-TGATGTAAC--ACCCC-C-
gi|3 : ATAT-CAATTGC-C-TTGA-GC-C-CTCT-CCGA--TTTTTCTGA-A--T-TTCAAAT-C-CG-ACT-TTGC-------CGAA----------------A-------T---A--------------A-G----G--TCGC-CT-AGTTTT---C-GAC--GTT-TTACTCTGAAATACA-CTGTAC-ATGTATTTTCA-GTTTGAA-TTAGAATA-TAA-TGTCAGAAATTCAATGGAATTTTGAA-GGCTCA--TTGGCTCGAA-TT-GCAATGGCTCGAA-CA-CTA--AA-G-TTGCAATT-----AAACCATTTTTGTTG---TCCCTT--CT-C-AG-ATTG-G-AA-CGT-ACTT-TA---ACT--TC-G--ATAG-CTCAAA-CACC---TTT------TGCTCGAACTGT-TT-T-CAATGGTCCCTT--GCTTTGACTGTACACT------------AATCCAGTTGAATCA--C-AAATTCG-------TGTG-TGATGTA--CACCCCA-C-CCCCCCC-----AAACCAT-GGTATATCTGAAA-TTGAAAAT-AACTGCGTGTTTAAATACCTTTTTCCG-AATCTACCTTCA-TCA-GACA-CACTAG--GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNN-NNNNN-NNNNNNNNN----------NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNTGTGAA--CCCGG----------------------CCTC--CCA--GAAGCTGACG----TTG-A---------AGCTTTTCTGGCCG------------------C-AACTGTG---ATTATAATTGTA-CTTTCCGAATATTATGATCTCAGGATGATT-TT--AANNN-NNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNNNN-----N----N-TTTAC-T-GTGGCAAA--AGTTCAGTTAATA--------------TAATGT-ACAC-TA---GT-TTATAGC-ATGTT-AC-AA--AAGATATTCAGTGTA--TTTCTTTTTATTATG-TTTT---GATT-TTGCA---ATACA-------CATACA-CAGA-GAGAGAGAGAGAGAGct
gi|4 : ATAT-CAATTGC-C-TTGA-GC-C-CTCT-CCGT--CTTTTCTGA-A--T-TCCAAAA-C-TG-ACT-TTGC-------CGAA----------------A-------T---AC----ATAA-A--AA-G----G--TCGC-CT-AGTTTT---C-GAG--GTT-AAACTTTTGACTAT--TTAAAG-AAATATTTTTA-ATTTGAA-T----------A-TGTCAGAAATACAATGGAATTTCGAT-GGCTCA--TTAGCTCGAA-TT-GCAATGGCTCGAA-CA-CTATGAGTG-TCGCA---------AACCATTTT-GTTG---TCCCTT--GT-C-GG-ACTG-G-AA-CGT-ACTA-TA---ACA--TC-G--ATAG-TTCGAA-TACC-C-TCT------ATCTCGAACTGT-TT-T-CAATGGTCCCTT--GGTTTGACTGTACACC------------ATTCCA-----------C-AA-CTTG-------TATG-TGATG------ACCCC-C-CCCCCCC-----
gi|5 : tattaaggattaacctttgtctatgttttacggtgaattcgtgttaactttacttaatttctgcagatttgattcacattaaaaagctttgcaattgttttgaatgtcaattttgtacgtagccgataatttggggtataattcttttgtattcagtggggtgtgtggtttttttttttggtttttttttcttttgatttttaggtagagttttttcacgtccctgacgcactgtcgtcaattacaatgtactagtataataatatataaagttacccactcttttcgttgaattgttttgtgcgtccgttgttaacttcgaacagctattcaagaatttttaattcgcaatatttcatgaaactttgtgtatttttatGAATG-TCGCA---------AACCATTTTTGT-G---TCC-TT--CT-C-AG-ATTG-G-AAATGT-ACTT-TA---ACT--TC-G--ATAG-CTCGAAACACC-C-TTT------TGCTCGAACTGT-TT-TTCAGTGG--CCTT--GCTTTGACTGTACACC------------AATCCA-----------C-AAGCTGA-------TGTG-TGATGTAACCAACCCC-C-CCCC----------------------TCTGAAA-TTGAAAATTAACTGCGTGTT--AATAC--TTTTCCG-AATTTACCTTCA-TCA-GACATCACTAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNN-NNNNN-NNNNNNNNN----------NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTCGG----------T-----------CCTC--CCA--GAAGCTGACG----TTG-A---------AGCTTTTCCGGCCG------------------C-AACTTTAC--ATTA----TGTT-CTTTCCNNNNNNNNNNNNNNNNNNNNNNNN-NN--NNNNN-NNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNTTA----AATTTAC-T-GTGGCAAA--ATTTCAGTTAATA--------------T--TGT-A-A--TA---GT-CTATAGC-ATGCT-AC-AAAGAAGATATTCAGTGTA--TTTCTTTTTATTATGTTTTT---GAT
gi|6 : ATATTCAAT-GC-C-TTGA-GC-C-CTCT-C-GA--TTTT-CTCA-A--T-TTCAAAAGCACG-ACT-TTGC-------CGAA----------------A-------T---AC----ACACAATTAA-G----G--TTGC-TT-AGTTTT---T-GA---GTT-TT-CTCTTGACTAA--TTAAAG-AA--ATTATTG-GTTCGAA-TTTGAATA-TA--TGTCAGAAATACAAT-------TG---G-CTCACATTA---CAAAATTTGCAATGTCTCGTAACA-CT---------------T-----AGAC---TTGAGTTG---TCTATT--CT-C-AG-ACTG-G-AA-CGT-ACCA-TA---ACC--TC-G--ATAG-CTCT-A-CACCAA-TTT------AGCTCGAACTGTGTTGT-CAATGGTCACTTAGGC-TTGACTGTACACC------------AATCCA-----------CAAA-CTTGTGTGTAATGTG-TGATGCAACCAGCCAC-C-ACCCTCCATTTAAAACCATGGGTTTATCAGAA
gi|7 : ggttagagtttttccacgtccctggtgtactccctcaattactaaacacagttgtttaagttaccccctcttttcgttgaaataatttgtgcgtccgtttgtcaacttcgagcagcatttactcaaaatcttttaattcacgaaaatggctgatattttgagtatttttgtatatttatTTACATAAA---CAAAT--T-TG-TCCAA-CCTTCCCAGGCCT--TCA-CCAAA--GGATT-CC-TTT-TT----GT-T-G--TTT--TTTTTAATAGCAA-TTTG-TTTATT-AA--TATA-AAACA--TTA---CAAG--TATT--CTC---------T-AGA-AGACTGTA----CACGC-CAAAGT--TTATAT----------ACATGTAC-TTTCCGTT-C-TTACACATGATCCAA-GG-ATACAATGTCGT-TTAAGTAT-G-TG-TAACATGATTATGTACCGGTATCATGTTTAAACAAT-AACTAT-GGGATA-TTACGAT-ATTCTGTGACA-A--TGA--TCTG-AA-----AA-A--GACTTGCGACTTC-T-------TTC---T-TT-CTG-TA-GGG-------TCCATAA-----TGTTTCTCTGGTCCAATTTTTAAAC-CCCGAAAAGTCCGTTGCTGAGCA--CGC--TTA---GTC--T-GGAAAC--GC-GC-AAAAAAACACGGATAGTCCGTCCCCAT-TCCACACCGTGAT-AACTAACAACAAAAACAAGAAAATGAGTTTCA-GTAT-ATATG-TTTAT--AAAT-CATGCTTGTGGTGCAGACAA-TATACAATACTCATCAAAAAGTTA-GCAGTCCAAATAATTATATTCCC
gi|8 : TTACATAAA---CAAAT--T-TG-TCCAAACCT-TCCAGGCCT--TCA-CCAAA--GGATT-CC-TTT-TT----GT-T-G--TTT--T-TTTTATAGCAATTTGT-TTTATT-AA--TAT--AAACAA-TTA---CAAG---ATT--CTC---------T-AGA-AGACTGTA----CACGC-CAA-GT--TTATAT----------ACATGTAC-TTTC--TT-C-TTACACATGATTCAAAGG-ATACAATGTCGT-TTAAGTAT-G-TG-TAACA-GATTATGTACCG-TATCATGTGTTAACAATTACTTAT-GGGATA-TTACGAT-ATTCTGTGACA-A--TGA--TCTG-AA-----AA-A--GACTTGCGACT-CTT-------TTC---T-TT-CTG-TA-GGG-------TCCATAA-----TGTTTCTCTGGTCCAATTTTTAAAC-CCCGAAAAGTCCGTTGCTGAGCA--CGC--TTA---GTC--T-GGAAAC--GC-GCAAAAAAAACACGGATAGTCCGTCCCCAT-TCCACACCGTGAT-AACTAACAACAAAAACAAGAAAATGAGTTTCA-GTATAATATGTTTTAT--AAATACTTGCTTGTGGTGCAGACAA-TATACAATACTCATCAAAAAGTTA-GCAGTCCAAATAATTATAT--CCTCctc
gi|9 : ATAT-CAACTGC-CTTTGA-GC-CTCTCTACCGAACTTTCTCTGACATCT-CTCAAAA-C-CATACTATTGC-------CAAA----------------A-------TTACAC----A----C--AA-ACACCG--TCGTACT-TGTTTT---CGGACTAGTTATTACTCTTGA-TAT--TCAAAG-AAATATTTTTA-ATTTG------CAATACTAC-TGTCAGAA--TAACTGTA------------CCA--T--AC----AATG-GCA-----TCGAAACA-CTATGAA-G---------------------TTCTGTTG---TCCCTT--CTACGAG-ACTGTGTAA-CGTCACGTATA---ACC--TC-GATATAGCCTCGAA-CACC-CGTTT------AGCTCGGACTGT-TT-T-CAATGATCCCTT--Gc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): ACATCTAGGGGCGGATTCAGGAATTCTGGTTTAGGGGCGGGAGTCCGAAGAACTTTATTATACTTAGATGGGCAGGGGTTGGAGGCCGCCTTAAACGTTAGTGTCCCCAGTGGTCCGTAAGGGCAGACACCCTGGTTG
Unaligned ( gi|20 ): TATTAAGCATTAAGCCCTTCATGTTGTGCTTTCTGGTGATTTTGTGTTTAACTTACATATACAGATGGTTACTTACATTAAAAAAGCTTCGTATTGCTTTTTTTGGATGTCAATTTGGTACATATTAGATAAT
Unaligned ( gi|28 ): TACCATCCAGGGGCGGATCCAGGAATTCTGGTT