lowQualScore : 11111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111
lowQualScore : 1 1111 222222 88888888888888888888888888888888888888888888888888888888888 444444444 555555555555555555555 222 111111 1 11111111 11 1 111111111111111111111111111111111111111 11 333 1 2 4 4 55555555 333 2222 22 2 11
lowQualScore : 6 0 1 1 8888 66 66 55 222222 888 2 66 33333333333333333333333333333333333333333333333333333333333 888 4 2 7777 3 111111111 0 111111111111111111111 444 5 4 555 0 111111 5 6 0 3 1 8888 22222222 8 55 00 2 2 11 555555555555555555555555555555555555555 1 6 88 1 3 4 4 77 555 3 5 2 0 0 0 55555555 555 4444 2 77 0 555 99
lowQualScore : . . . . .... .. .. .. ...... ... . .. ........................................................... ... . . .... . ......... . ..................... ... . . ... . ...... . . . . . .... ........ . .. .. . . .. ....................................... . . .. . . . . .. ... . . . . . . ........ ... .... . .. . ... ..
lowQualScore : 7 8 4 7 1111 99 99 88 888888 888 8 99 66666666666666666666666666666666666666666666666666666666666 666 4 1 1111 3 999999999 8 000000000000000000000 222 5 0 999 4 999999 8 2 2 6 5 5555 11111111 3 55 55 2 2 55 111111111111111111111111111111111111111 0 7 00 0 0 0 0 55 000 0 5 5 0 0 0 00000000 000 0000 5 55 0 555 55
consensus : GCATACAATATATTTTTTATGGGCGGCGGAAAGGGTAGAAAAAA--GAC--GTTAAT-G--CAAAA---CGAACAACCAA--TTTTCAAAA-A-ATACT----CGATT-CGTGAT--A---AATA----C-GACCAGCTT-T--A---AAAAAC--GAA-ATCGACAGA----C-TC---A-T-TAGCAAAATCAAAN-----GACT-CCG-TNG-AAAACGAA-GATCANCGATGC-AAAACCAACGG-TCATT--A---ACNGAATTGA-CGCTAGATGGCGTGCA----AAGA--------ACAGNCATT--ATCGGAATTAACGCTAGATGGCGCACGTA-TCT---TACGTAATTATACAGA-----TGCGTA---ATCANGACAACTCGCCACCAAGACATGTCGCNCCNANGGAAGCCCAGGGTCCTNATTTTNAAAGAACAGCTACTTGTATA-GTAAG-CCTAATAAACATATTAGCAGTACATTGTGAATGAAAGAAATTCTTGAAAGACNAAATGATATTTTAGTCAANCNTTTTCCCTTTCAATANTCAGCATCAGA
Reference ( gi|1 ) : GCATACAATATATTTTGTATGGGCGCCGGAAGAAATAGAGAAAA--GAC--GTTCAT-A--CCAAA---CGAACAACTAA--TTTTCAAAA-A-ATATT---TCGATTTCGTGAT--A---AATAT---CTGACTAGCTTTTTAAAAAAAAAAT--AAA-ATCGACAGA----C-TC---A-T-TAGCAAAATCAAAT-----GACT-CCG-TGG-AAAACGAA-GATCATCGATGC-AAAACCAACAA-TCATT--A---ACGGAAATGA-CGCTAGATGGCGTACA----AAGA--------ACAGACATT--ATCGGAATTAACGCTCGATGACGCATGTA-TCT---TACGTAATTATACAGATTGGGTGCGTAGACATTACGACAACTCGTAACCAAGATATGTTGCACCAAAAGAAACCCAG---CCTAATTTTCAAAG-ACAGCTACTTGTATATGTAAGCCCTAATAAACATA-TA-C--TACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
gi|2 : GCATACAATATATTTTGTATGGGCGCCGGAAGAAATAGAGAAAA--GAC--GTTCAT-A--CCAAA---CGAACAACTAA--TTTTCAAAA-A-ATATT---TCGATTTCGTGAT--A---AATAT---CTGACTAGCTTTTTAAAAAAAAAAT--AAA-ATCGACAGA----C-TC---A-T-TAGCAAAATCAAAT-----GACT-CCG-TGG-AAAACGAA-GATCATCGATGC-AAAACCAACAA-TCATT--A---ACGGAAATGA-CGCTAGATGGCGTACA----AAGA--------ACAGACATT--ATCGGAATTAACGCTCGATGACGCATGTA-TCT---TACGTAATTATACAGATT-GGTGCGTAGACATTACGACAACTCGTAACCAAGATATGTTGCACCAAAAGAAACCCAG---CCTAA-TTTCAAAG-ACAGCTACTTGTATA-GTAAG-CCTAATAAACATATTA-C---ACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
gi|3 : TTTTTATGGGTGGTGGAAAGGGTA-AGAAAAACGAC--GT-CATTA--CAAAA---CGAACAACCAG--TTCTCAAAC-ACATACT---GAAATA-CATGAT--A---GATA-------AC-A-----TTAAGACAAAGCC--------CGACA-A----C-----------AGCAACAT-AGGT-----AATT-GCA-AAG-TAAACAAA----CTGCGTTGC-AAATTGAACGA-T------A---ACAGAACTGA-TGCTAAATAATATGCA----AAGA--------ACAGGCATT--AT-GCAATTAACGCTAGATGGCGTATG-A---C---TA-GTCATTA---AGA--------------ATCAAGACAACTCACCACCAAGACTTATCGTCCCTATGGAAG--CAGGGTCCTCATTTTAAAAGAACAACT
gi|14 : atcgTTTTATGGGCGGCGGAAAGGGTTAAAAAAA--GATATGTTAAT-G--CAACT---CAAACAGTCAA--TTTTCAAAA-cgatcaactatcaaaaataacaatcaacaatgatcaatatgttatgtattacatatagcagtacattatgaatgaaagaaattcaagacaaaatgatattttagtcaagcttttttcctttcaatttcagcattaga
gi|4 : gTATGGGCGGCGGAAAGGGTAAA-AAAA--GAT--GTTAAT-G--CAAAA---CGAACAATCAA--TTTTCAAAA-CCATACT--------------A---A---AATACAAGCTAACCAGCTTAT---------AAT--GAA-ATCAACAGG----C-TCCAAA-T---GCAAAACCAA-C-----GATTGCCG--------ACGT--GAT-AT--ATGC-AAAAGCAACGG-TCATT--A---ACTGAATTGA-CGCTATATGGCGCGCACCCCAACACCCCCTCCCCCGACATC--ATCTGAATTAACGCTAGAGGGCGC---TAGTCTAGCTATATAATCATgcatac
gi|8 : cATGGGCAGTGGAAAAGGTA---AAAT--GAT--GTTAAA-ATTCAAAA---CGAACAACTGA--TTTTCAAAATC-ACACCGAATTGAGTGAATGAT--AT--GATA------GATCAGCTC---------AAAAC--AAA-ATCAACAGG----C-TCT--G-T-T-GCAAAATCA
gi|12 : TGGGCAGCGGGAAAGAT-GAAAATA--GAC--GTTAAT-G--CAAAA---CGAGTAAC--A--TTT--AAAA-A-AAA--------ATTAC-TGA---A---AA---------ACTAGCTT---------AAAAC--CAA-ATCAGCATA----CTTT---G-T-T-GCAAAACTAAccgacgtaaaaccaaccatca
gi|7 : cGAAAGGGCAAAAA--GAC--GTGAAT----CAAAA---AGAACA--TAAATTTTTCAAA-----TAT-----CAAT-----GAT--ATGCAAAAA---CAAACCA-CTCTT------AAAAAT--ACACATCAACAGA----C-CC---C-C---GCATG-CCAAA-------ACC-----------AGCGAA---TCATCCATGC-AAAACCAACAG-TCATTTTA---CCCGAC-T---CACTAGATGGCGTcgatttcc
gi|10 : gggctgA--GAC--GTTCAA-A----AAAATCCGAACAATTTA--TTCTCAAAA------------CCAATCCGAAATGCA---AAAA-------ACAAACTT----AGGACAAAATCCAAA-ATCAATAGA----C-TC-------TA----AATCCA----------T-----TGC-AAAACGAATGATCAACAATGC-AAAATCATCGG-TCATT--A---ACAGAATTGg
gi|8 : AAT--GAT-AT-GATAGATCAGC-TC---A-A--AACAAAATCAACA-----GGCT-CTG-TTG-CAAA------ATCACCGACGT-AAAACCAACCA-TCA
gi|6 : atgggcagtggaaaaggtaaaatgatgttaaaattcaaaacgaacaactgattttcaaaatcacaccgaattgagtg--AAA-A---ACATA----C-TG---A-A-AAGCAAAA-CAAACCAAGAGACT-CCG-TTGCAAAACCAACGATCACCGATAT-AAAACCAACAG-CCATT--A---ACCAAATTGA-CGCTAAATGGCGTGCA----AATA--------ACAATTAAT--ATCTGAATTAATGCTAGATGGCGC
gi|11 : tttatgggtggcagaaaggatggggaaaaaacaagtactctgtacatgcaaaacgattttccCAACAAA----T-TCCG-A-C-T-GCAAAATCAGAA-----GATT-CCG-TCACAAAACAA----TCAACGATAC-AAAAC--ACGAGTCATC--ACG-ACG----TGAACGCTAGATGGCGTGC-----GGGA--------ACAG-CATTGAAT-AAAATTGACGgctagtctatct
gi|9 : ATAGA----C-TC---AAT-TGG-AAAAGCAATG-----GATT-TCG-TTGCAAAACAAACGAT----AATGCCAAAACCAGCAA-T-ATT--TTTTACTGAATTGA-AGCTACATGGCGTGCA----A----------------------ATC-GAATTAATGCTAGATG
gi|5 : aaaatatattgatatgcataAGA----C-TC---A-TATTGCAAAATCAA-------GATT-CTACTGT-TATACGAACGATCACCGATGT-AAAACCAAC----------------------------TAGATGGCGTACA----AAGA--------ACA-----------GGAATAAACGCTAGATTGCGCACGAG-TCT---TA---AA----AC--------TGTATA---ATCAGGACAACTCGCCATCAAGACAgtgtttgcgtagtc
gi|15 : acaaagccaagtAACCAATAG-TCATT--A---ATAGAATTAA-CGCTAGATGGCGTGCA----AAGA--------ACAGAaatccctcattgagaacaattcgcccctgaaagataactacagcacctgatgagcaaattgtattttagcagtgtattatgaataaa
gi|17 : cgctatAACCAATAG-TCATT--A---ATAGAATTAA-CGCTAGATGGCGTGCA----AAGA--------Atgtgaacaatg
gi|16 : tCGGAATTAA-CGCTAGATGACGCACA----A
gi|15 : aacagactttctA--------ATAGTCATT--AATAGAATTAACGCTAGATGGCGtacataaacgattgg
gi|17 : cgctataaccA--------ATAGTCATT--AATAGAATTAACGCTAGATGGCGtgcaaagaacagatgtgaacaatg
gi|16 : taaccA--------ACAGACTTT--CTCGGAATTAACGCTAGATGACGCAtgcaaagaa
gi|3 : ACATA-TAGCAGTACATTATGAATGAAAGAAATTC----AAGACAAAATGATATTTTAGTCAAGCTTTTTTCCTTTCAAT-TTCAGCATTAGAcaatacataaacgattgg
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): GTATTCTATAGGTGGTGGAAAGGGTAAATGCAAACGATCAAAAAGTTAGTCAAAAAGCATATAATGAAATACCTGTAGATAAAATCAAGCTAACGATCATCGATACAAAAACATCATAG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 111111111111 11111 1111111111111111111111111111111111111111111111111111111111111 444444444 2222222222222 11 11111111 1 111 1 77777777777777 222 44444 1111 2 444444444444444444444444444444444 888888888888888888888888888 333 33 2
lowQualScore : 0 4 333 1 55 55 222222222222 4 00000 5 55 4 9999999999999999999999999999999999999999999999999999999999999 4 9 99 3 3 111111111 0 55 1 3 1111111111111 4 99 2 4 66 0 44 555 2 0 3 8888 33333333 1 66 99 00 6 8 444 3 0 5 3 55555555555555 1 2 1 1 33 111 44444 4444 1 7 666666666666666666666666666666666 0 222222222222222222222222222 2 2 777 7 1 00 3 222 88
lowQualScore : . . ... . .. .. ............ . ..... . .. . ............................................................. . . .. . . ......... . .. . . ............. . .. . . .. . .. ... . . . .... ........ . .. .. .. . . ... . . . . .............. . . . . .. ... ..... .... . . ................................. . ........................... . . ... . . .. . ... ..
lowQualScore : 6 4 999 3 55 55 666666666666 8 00000 5 55 0 0000000000000000000000000000000000000000000000000000000000000 4 0 55 6 6 888888888 8 22 0 6 5555555555555 0 44 4 0 88 4 66 888 2 6 6 5555 22222222 2 11 66 66 0 0 000 2 8 6 2 22222222222222 0 5 0 0 00 888 22222 0000 0 8 222222222222222222222222222222222 8 000000000000000000000000000 5 0 777 3 0 77 7 777 33
consensus : GCATACAATATATTTTTTATGGGCGGC-GGAAAGGGTA-GAGAAAAG--AC--GT------TA-A--TGCAAAA-----CGAACAACTAA--TTTT-CAAAA-A-ATACT-CGA--TT-CG------TGAT----A-AATAC-----GACCAGCTTT------AAAAA-ACAAAATC--GA-CAGAC-TC---A-T-T-GCAAAATCAAANGATT-C------CGTNGCAAA-ACGAA-GATCANCGATGC-AAAACCAACG-GTCA--TTA---ACNGAATTGA-CGCTAGATGGCGTGCA----AAGA--------ACAGACATT--ATCGGAATTAACGCTAGATGGCGCACGTA-TCT---TACGTAATTATACAGATTGG-TGCGTAGACATCANGACAACTCGCNACCAAGACATGTCGCNCCNAAAGAAACCCAG---GCCCTAATTTTNAAAG-ACAGCT------ACTTGT-----ATA-GCAAG-C--C--TGATAAACA-----TA--TT-------------AGCAGTACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
Reference ( family-7811 ) : GCATACAATATATTTTTTATGGGCGGC-GGAAAGGGTA-GAAAAAAG--AC--GT------TA-A--TGCAAAA-----CGAACAACCAA--TTTT-CAAAA-A-ATACT-CGA--TT-CG------TGAT----A-AATAC-----GACCAGCTTT------AAAAA-ACGAAATC--GA-CAGAC-TC---A-T-TAGCAAAATCAAANGACT-C------CGTNG-AAA-ACGAA-GATCANCGATGC-AAAACCAACG-GTCA--TTA---ACNGAATTGA-CGCTAGATGGCGTGCA----AAGA--------ACAGNCATT--ATCGGAATTAACGCTAGATGGCGCACGTA-TCT---TACGTAATTATACAGA-----TGCGTA---ATCANGACAACTCGCCACCAAGACATGTCGCNCCNANGGAAGCCCAG--GGTCCTNATTTTNAAAGAACAGCT------ACTTGT-----ATA-GTAAG-C--C--TAATAAACA-----TA--TT-------------AGCAGTACATTGTGAATGAAAGAAATTCTTGAAAGACNAAATGATATTTTAGTCAANCNTTTTCCCTTTCAATANTCAGCATCAGA
gi|1 : GCATACAATATATTTTGTATGGGCGCC-GGAAGAAATA-GAGAAAAG--AC--GT------TC-A--TACCAAA-----CGAACAACTAA--TTTT-CAAAA-A-ATATTTCGA--TTTCG------TGAT----A-AATATCT---GACTAGCTTTTTAAAAAAAAA-ATAAAATC--GA-CAGAC-TC---A-T-TAGCAAAATCAAATGACT-C------CGTGG-AAA-ACGAA-GATCATCGATGC-AAAACCAACA-ATCA--TTA---ACGGAAATGA-CGCTAGATGGCGTACA----AAGA--------ACAGACATT--ATCGGAATTAACGCTCGATGACGCATGTA-TCT---TACGTAATTATACAGATTGGGTGCGTAGACATTACGACAACTCGTAACCAAGATATGTTGCACCAAAAGAAACCCAG-----CCTAATTTTCAAAG-ACAGCT------ACTTGT-----ATATGTAAGCC--C--TAATAAACA-----TA--T-----------------ACTACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
gi|10 : AG--AC--GT------T-------CAAAAAAATCCGAACAATTTA--TTCT-CAAAA-------C-CAA--TC-CG--------------A-AATGC---------------------AAAAA-ACAAACTTAGGA-CAAAA-TC----------CAAAATCAATAGACT-CTAAATCCATTGCAAA-ACGAATGATCAACAATGC-AAAATCATCG-GTCA--TTA---ACAGAATTG
gi|11 : C--AA-CAAAT-TCCG-A-C-T-GCAAAATCAGAAGATT-C------CGTCACAAA-ACAA----TCAACGATAC-AAAAC--ACGAGTCA--TCA-----CGACGTGAACGCTAGATGGCGTGC-----GGGA--------ACAG-CATTGAAT-AAAATTGACG
gi|12 : TGGGCAGC-GGGAAAGAT--GAAAATAG--AC--GT------TA-A--TGCAAAA-----CGAGTAAC--A--TTT---AAAA-A-AAA-----A--TT-AC------TGA-----A-AA---------ACTAGCTT---------AAA-ACCAAATC--AG-CATACTTT---G-T-T-GCAAAA-CTAACGATT-T------C
gi|14 : cTTTTATGGGCGGC-GGAAAGGGTT-AAAAAAAGATAT--GT------TA-A--TGCAACT-----CAAACAGTCAA--TTTT-CAAAA-GCATACc
gi|15 : gAACCAATA-GTCA--TTA---ATAGAATTAA-CGCTAGATGGCGTGCA----AAGA--------ACAG
gi|16 : cgctatA--------ACAGACTTT--CTCGGAATTAACGCTAGATGACGCACatgtgaacaatg
gi|17 : AACCAATA-GTCA--TTA---ATAGAATTAA-CGCTAGATGGCGTGCA----AAGA--------Aaatacataaacgattgg
gi|2 : tGCATACAATATATTTTGTATGGGCGCC-GGAAGAAATA-GAGAAAAG--AC--GT------TC-A--TACCAAA-----CGAACAACTAA--TTTT-CAAAA-A-ATATTTCGA--TTTCG------TGAT----A-AATATCT---GACTAGCTTTTTAAAAAAAAA-ATAAAATC--GA-CAGAC-TC---A-T-TAGCAAAATCAAATGACT-C------CGTGG-AAA-ACGAA-GATCATCGATGC-AAAACCAACA-ATCA--TTA---ACGGAAATGA-CGCTAGATGGCGTACA----AAGA--------ACAGACATT--ATCGGAATTAACGCTCGATGACGCATGTA-TCT---TACGTAATTATACAGATTGG-TGCGTAGACATTACGACAACTCGTAACCAAGATATGTTGCACCAAAAGAAACCCAG-----CCTAA-TTTCAAAG-ACAGCT------ACTTGT-----ATA-GTAAG-C--C--TAATAAACA-----TA--TT-------------A----CACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
gi|3 : TTTTTATGGGTGGT-GGAAAGGGTAAGAAAAACG--AC--GT------CA-T--TACAAAA-----CGAACAACCAG--TTCT-CAAAC-ACATACT--GAAATA-CA------TGAT----A-GATA-------AC-A---TT------AAGA---CAAAGCCC-GA-CA-AC-----------AGCAACAT-AGGTAATT-G------CAAAG-TAA-ACAAA----CTGCGTTGC-AAATTGAACG-AT------A---ACAGAACTGA-TGCTAAATAATATGCA----AAGA--------ACAGGCATT--AT-GCAATTAACGCTAGATGGCGTATG-A-C-----TA-GTCATTA---AGA--------------ATCAAGACAACTCACCACCAAGACTTATCGTCCCTATGGAAG--CAG--GGTCCTCATTTTAAAAGAACAACTCGATCAAC-TATCAAAAATA-ACAAT-CAACAATGATCAATA-----TG--TTATGTATTACATATAGCAGTACATTATGAATGAAAGAAATTC----AAGACAAAATGATATTTTAGTCAAGCTTTTTTCCTTTCAAT-TTCAGCATTAGA
gi|4 : atcgTATGGGCGGC-GGAAAGGGTA--AAAAAAG--AT--GT------TA-A--TGCAAAA-----CGAACAATCAA--TTTT-CAAAACC-ATACT---A---------------------A-AATACAAGCTAACCAGCTT---------ATA-ATGAAATC--AA-CAGGC-TCCAAA-T---GCAAAACC-AACGATTGC------CG--------ACG-T-GAT-AT--ATGC-AAAAGCAACG-GTCA--TTA---ACTGAATTGA-CGCTATATGGCGCGCACCCCAACACCCCCTCCCCCGACATC--ATCTGAATTAACGCTAGAGGGCGC---TAGTCTAGCTATATAATCAT
gi|5 : c-ACAAAGCC--AAGTAGAC-TC---A-TATTGCAAAATCAA--GATT-C------TACTG-TTATACGAACGATCACCGATGT-AAAACCAAC----------------------------TAGATGGCGTACA----AAGA--------ACAG-----------GAATAAACGCTAGATTGCGCACGAG-TCT---TA---AA----AC--------TGTATA---ATCAGGACAACTCGCCATCAAGACAAATCCCTCATTGAGAA---CAATTCGCCC-----CTGAAAG-ATAACT------AC-----------A-GCA---C--C--TGATGAGCAAATTGTATTTT-------------AGCAGTGTATTATGAATAAA
gi|6 : TTTATGGGTGGC-AGAAAGGATG-GGGAAAAA--ACAAGTACTCTGTACA--TGCAAAA-----CG--------A--TTTTCCAAAA-ACATACT-
gi|6 : AAACCAAGAGACT-C------CGTTGCAAA-ACCAACGATCACCGATAT-AAAACCAACA-GCCA--TTA---ACCAAATTGA-CGCTAAATGGCGTGCA----AATA--------ACAATTAAT--ATCTGAATTAATGCTAGATGGCGCGCgaaaagcaaaacaaaccaagagactccgttgcaaaaccaacgatcaccgatataaaaccaacagccattaaccaaattgacgctaaatggcgtgcaaataacaattaatatctgaattaatgctagatggcgcgctagtctatct
gi|7 : tttatgggtggcagaaaggatggggaaaaaacaagtactctgtacatgcaaaacgattttccaaaaacatactgaaaagcaaaacGGCTGGAAAGGGCA----AAAAG--AC--GT------GA-A--T-CAAAA-----AGAACA--TAAATTTTT-C---A-A-ATA-T-CAA-------------TGATATGCA-AAAACA----AACCACTCTT------AAAAATAC-ACATC--AA-CAGAC-CC-------CCGC-ATGCCAAAA-----C------C-------A-GCGA---ATCATCCATGC-AAAACCAACA-GTCATTTTA---CCCGACT----CACTAGATGGCGTGtagtctatct
gi|8 : gATGGGCAGT-GGAAAAGGTA----AAATG--AT--GT------TA-AAATTCAAAA-----CGAACAACTGA--TTTT-CAAAATC-ACAC--CGA--AT-TGAGTGAATGAT----ATGATA------GATCAGCTC---------AAA-ACAAAATC--AA-CAGGC-TCT--G-T-T-GCAAAATCA
gi|9 : A-TAGAC-TC---AAT-TGG-AAAAGCAATGGATT-T------CGTTGCAAA-ACAAACGAT----AATGCCAAAACCAGCA-AT-A--TTTTTTACTGAATTGA-AGCTACATGGCGTGCA----A----------------------ATC-GAATTAATGCTAGATGGTGccgacgtaaaaccaaccatca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GTATTCTATAGGTGGTGGAAAGGGTAAATGCAAACGATCAAAAAGTTAGTCAAAAAGCATATAATGAAATACCTGTAGATAAAATCAAGCTAACGATCATCGATACAAAAACATCATAG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 111111111111 11111 55555555555555555555555555555555555555555555555555555555555555 333333333 1111 1 11111111 222222222 22222222222222222222222 11 2222 1111 1 444444444444444444444444444444444 888888888888888888888888888 222 11 1
lowQualScore : 0 4 44444 55 55 222222222222 4 00000 2 55 55555555555555555555555555555555555555555555555555555555555555 4 1 999 3 3 222222222 3 99 3 999999 1111 2 4 2 4 66 0 44 555 2 0 3 8888 33333333 7 66 99 00 666666666 9 33333333333333333333333 1 1 1 1 1 33 6 4444 2222 1 0 555555555555555555555555555555555 0 222222222222222222222222222 2 333 7 88 3 7
lowQualScore : . . ..... .. .. ............ . ..... . .. .............................................................. . . ... . . ......... . .. . ...... .... . . . . .. . .. ... . . . .... ........ . .. .. .. ......... . ....................... . . . . . .. . .... .... . . ................................. . ........................... . ... . .. . .
lowQualScore : 6 4 66666 55 55 666666666666 8 00000 8 55 66666666666666666666666666666666666666666666666666666666666666 0 3 666 3 3 888888888 7 22 3 666666 3333 0 5 4 0 88 4 66 888 2 6 3 5555 22222222 3 11 66 66 777777777 3 44444444444444444444444 0 0 0 0 2 88 5 8888 5555 0 0 888888888888888888888888888888888 8 000000000000000000000000000 5 333 3 33 3 3
consensus : GCATACAATATATTTTTTATGGGCGGC-GGAAAGGGTA-GAGAAAAG--AC--GT------TA-A--TGCAAAA-----CGAACAACTAA--TTTTCAAAA-A-ATACT-CGA--TT-CG------TGATA----AATAC-----GA-CCAGCTTT------AAAAA-ACAAAATC--GA-CAGAC-TC--A-T--T-GCAAAATCAAANGATT-C------CGTCGCAAAACGAA-GATCANCGATGC-AAAACCAACG-GTCA--TTA---ACNGAATTG-ACGCTAGATGGCGTGCA----AAGA--------ACAGACATT--ATCGGAATTAACGCTAGATGGCGCACGTA-TCT---TACGTAATTATACAGATT-GGTGCGTAGACATCANGACAACTCGCNACCAAGACATGTCGCNCCNAAAGA--AACCCGGGCCCTAATTTTNAAAG-ACAGCT------ACTTGT-----ATA-GCAAG-C--C--TGATAAACA-----TA--T-------------TAGCAGTACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
Reference ( family-7811 ) : GCATACAATATATTTTTTATGGGCGGC-GGAAAGGGTA-GAGAAAAG--AC--GT------TA-A--TGCAAAA-----CGAACAACTAA--TTTTCAAAA-A-ATACT-CGA--TT-CG------TGATA----AATAC-----GA-CCAGCTTT------AAAAA-ACAAAATC--GA-CAGAC-TC--A-T--T-GCAAAATCAAANGATT-C------CGTNGCAAAACGAA-GATCANCGATGC-AAAACCAACG-GTCA--TTA---ACNGAATTG-ACGCTAGATGGCGTGCA----AAGA--------ACAGACATT--ATCGGAATTAACGCTAGATGGCGCACGTA-TCT---TACGTAATTATACAGATT-GGTGCGTAGACATCANGACAACTCGCNACCAAGACATGTCGCNCCNAAAGA--AACCCAGGCCCTAATTTTNAAAG-ACAGCT------ACTTGT-----ATA-GCAAG-C--C--TGATAAACA-----TA--T-------------TAGCAGTACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
gi|1 : GCATACAATATATTTTGTATGGGCGCC-GGAAGAAATA-GAGAAAAG--AC--GT------TC-A--TACCAAA-----CGAACAACTAA--TTTTCAAAA-A-ATATTTCGA--TTTCG------TGATA----AATATCT---GA-CTAGCTTTTTAAAAAAAAA-ATAAAATC--GA-CAGAC-TC--A-T--TAGCAAAATCAAATGACT-C------CGTGG-AAAACGAA-GATCATCGATGC-AAAACCAACA-ATCA--TTA---ACGGAAATG-ACGCTAGATGGCGTACA----AAGA--------ACAGACATT--ATCGGAATTAACGCTCGATGACGCATGTA-TCT---TACGTAATTATACAGATTGGGTGCGTAGACATTACGACAACTCGTAACCAAGATATGTTGCACCAAAAGA--AACCCAG--CCTAATTTTCAAAG-ACAGCT------ACTTGT-----ATATGTAAGCC--C--TAATAAACA-----TA--T-----------------ACTACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
gi|10 : AG--AC--GT------T-------CAAAAAAATCCGAACAATTTA--TTCTCAAAA-------C-CAA--TC-CG----------A----AATGC----------------------AAAAA-ACAAACTTAGGA-CAAAA-TC----------CAAAATCAATAGACT-CTAAATCCATTGCAAAACGAATGATCAACAATGC-AAAATCATCG-GTCA--TTA---ACAGAATTG-
gi|11 : C--AA-CAAAT-TCCGA-C--T-GCAAAATCAGAAGATT-C------CGTCACAAAAC----AATCAACGATAC-AAAAC--ACGAGTCA--TCA-----CGACGTGAACGCTAGATGGCGTGC-----GGGA--------ACAG-CATTGAAT-AAAATTGACG
gi|12 : TGGGCAGC-GGGAAAGAT--GAAAATAG--AC--GT------TA-A--TGCAAAA-----CGAGTAAC--A--TTT--AAAA-A-AAA-----A--TT-AC------TGA-A----AA---------A-CTAGCTT---------AAA-ACCAAATC--AG-CATACTTT--G-T--T-GCAAAA-CTAACGATT-T------C
gi|14 : cTTTTATGGGCGGC-GGAAAGGGTT-AAAAAAAGATAT--GT------TA-A--TGCAACT-----CAAACAGTCAA--TTTTCAAAA-GCATACc
gi|15 : gAACCAATA-GTCA--TTA---ATAGAATTA-ACGCTAGATGGCGTGCA----AAGA--------ACAGA
gi|16 : cgctatA--------ACAGACTTT--CTCGGAATTAACGCTAGATGACGCACA-A-------TACATAA----AC-GATT-GGtgtgaacaatg
gi|17 : AACCAATA-GTCA--TTA---ATAGAATTA-ACGCTAGATGGCGTGCA----AAGA--------A
gi|2 : tGCATACAATATATTTTGTATGGGCGCC-GGAAGAAATA-GAGAAAAG--AC--GT------TC-A--TACCAAA-----CGAACAACTAA--TTTTCAAAA-A-ATATTTCGA--TTTCG------TGATA----AATATCT---GA-CTAGCTTTTTAAAAAAAAA-ATAAAATC--GA-CAGAC-TC--A-T--TAGCAAAATCAAATGACT-C------CGTGG-AAAACGAA-GATCATCGATGC-AAAACCAACA-ATCA--TTA---ACGGAAATG-ACGCTAGATGGCGTACA----AAGA--------ACAGACATT--ATCGGAATTAACGCTCGATGACGCATGTA-TCT---TACGTAATTATACAGATT-GGTGCGTAGACATTACGACAACTCGTAACCAAGATATGTTGCACCAAAAGA--AACCCAG--CCTAA-TTTCAAAG-ACAGCT------ACTTGT-----ATA-GTAAG-C--C--TAATAAACA-----TA--T-------------TA----CACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
gi|3 : TTTTTATGGGTGGT-GGAAAGGGTAAGAAAAACG--AC--GT------CA-T--TACAAAA-----CGAACAACCAG--TTCTCAAAC-ACATACT--GAAATA-CA------TGATA----GATA-------A-C-A---TT------AAGA---CAAAGCCC-GA-CAA----C--A------GCAACAT-AGGTAATT-G------CAAAGTAAA-CAAA----CTGCGTTGC-AAATTGAACG-AT------A---ACAGAACTG-ATGCTAAATAATATGCA----AAGA--------ACAGGCATT--AT-GCAATTAACGCTAGATGGCGTATG-A---C---TA-GTCATTA---AGA--------------ATCAAGACAACTCACCACCAAGACTTATCGTCCCTATGGA--AG-CAGGGTCCTCATTTTAAAAGAACAACTCGATCAAC-TATCAAAAATA-ACAAT-CAACAATGATCAATA-----TG--TTATGTATTACATATAGCAGTACATTATGAATGAAAGAAATTC----AAGACAAAATGATATTTTAGTCAAGCTTTTTTCCTTTCAAT-TTCAGCATTAGA
gi|4 : atcgTATGGGCGGC-GGAAAGGGTA-AA-AAAAG--AT--GT------TA-A--TGCAAAA-----CGAACAATCAA--TTTTCAAAACC-ATACT---A-----------------A----AATACAAGCTAA-CCAGCTT---------ATA-ATGAAATC--AA-CAGGC-TCCAA-A--T-GCAAAACC-AACGATTGC------CG-------ACG-T-GAT-AT--ATGC-AAAAGCAACG-GTCA--TTA---ACTGAATTG-ACGCTATATGGCGCGCACCCCAACACCCCCTCCCCCGACATC--ATCTGAATTAACGCTAGAGGGCGC---TAGTCTAGCTATATAATCAT
gi|5 : c-ACAAAGCC--AAGTAGAC-TC--A-TATT-GCAAAATCAA--GATT-C------TACTGTTATACGAACGATCACCGATGT-AAAACCAAC----------------------------TAGATGGCGTACA----AAGA--------ACAG-----------GAATAAACGCTAGATTGCGCACGAG-TCT---TA---AA----AC--------TGTATA---ATCAGGACAACTCGCCATCAAGACAAATCCCTCATTGAGAACAATTC--GCCC-----CTGAAAG-ATAACT------AC-----------A-GCA---C--C--TGATGAGCAAATTGTATTT-------------TAGCAGTGTATTATGAATAAA
gi|6 : TTTATGGGTGGC-AGAAAGGATG-GGGAAAAA--ACAAGTACTCTGTACA--TGCAAAA-----CG--------A--TTTTCCAAA-A-AC------------------------------ATAC---------------T------GAAAA-GCAAA------A-CAAAC-------------CAAGA------GACT-C------CGTTGCAAAACCAACGATCACCGATAT-AAAACCAACA-GCCA--TTA---ACCAAATTG-ACGCTAAATGGCGTGCA----AATA--------ACAATTAAT--ATCTGAATTAATGCTAGATGGCGCGC
gi|7 : GGCTGGAAAGGGCA----AAAAG--AC--GT------GA-A--T-CAAAA-----AGAACA--TAAATTTTTCAAA-----TA-T-CAA--T-----------GATATGCAAAAAC-----AAACCACTCTT------AAAAATAC-ACATC--AA-CAGAC-CC----C--C-GC-ATGCCAAAA-----C------C-------AGCGA---ATCATCCATGC-AAAACCAACA-GTCATTTTA---CCCGACT----CACTAGATGGCGTGtagtctatct
gi|8 : gATGGGCAGT-GGAAAAGGTA----AAATG--AT--GT------TA-AAATTCAAAA-----CGAACAACTGA--TTTTCAAAATC-ACAC--CGA--AT-TGAGTGAATGATAT---GATA------GA-TCAGCTC---------AAA-ACAAAATC--AA-CAGGC-TCT-G-T--T-GCAAAATCA--------C------CGACGTAAAACCAA-
gi|9 : A-TAGAC-TC--AAT--T-GGAAAAGCAATGGATT-T------CGTTGCAAAACAAACGAT----AATGCCAAAACCAGCA-AT-A--TTTTTTACTGAATTG-AAGCTACATGGCGTGCA----A----------------------ATC-GAATTAATGCTAGATGGTGccatca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GTATTCTATAGGTGGTGGAAAGGGTAAATGCAAACGATCAAAAAGTTAGTCAAAAAGCATATAATGAAATACCTGTAGATAAAATCAAGCTAACGATCATCGATACAAAAACATCATAG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 111111111111 11111 55555555555555555555555555555555555555555555555555555555555555 333333333 111111111111 1 11111111 222222222 22222222222222222222222 11 2222 1111 1 444444444444444444444444444444444 888888888888888888888888888 222 11 1
lowQualScore : 0 4 44444 55 55 222222222222 4 00000 2 55 55555555555555555555555555555555555555555555555555555555555555 4 1 999 3 3 222222222 3 99 333333333333 1 4 8 2 4 66 0 44 555 2 0 3 8888 33333333 7 66 99 00 666666666 9 33333333333333333333333 1 1 1 1 1 33 6 8888 2222 1 0 555555555555555555555555555555555 0 222222222222222222222222222 2 333 7 88 3 7
lowQualScore : . . ..... .. .. ............ . ..... . .. .............................................................. . . ... . . ......... . .. ............ . . . . . .. . .. ... . . . .... ........ . .. .. .. ......... . ....................... . . . . . .. . .... .... . . ................................. . ........................... . ... . .. . .
lowQualScore : 6 4 66666 55 55 666666666666 8 00000 8 55 66666666666666666666666666666666666666666666666666666666666666 0 3 666 3 3 888888888 7 22 888888888888 2 3 2 4 0 88 4 66 888 2 6 3 5555 22222222 3 11 66 66 777777777 3 44444444444444444444444 0 0 0 0 2 88 5 2222 5555 0 0 888888888888888888888888888888888 8 000000000000000000000000000 5 333 3 33 3 3
consensus : GCATACAATATATTTTTTATGGGCGGC-GGAAAGGGTA-GAGAAAAG--AC--GT------TA-A--TGCAAAA-----CGAACAACTAA--TTTTCAAAA-A-ATACT-CGA--TT-CG------TGATA----AATAC-----GA-CCAGCTTT------AAAAA-ACAAAATC--GA-CAGAC-TC--A-T--T-GCAAAATCAAANGATT-C------CGTCGCAAAACGAACGATCANCGATGC-AAAACCAACG-GTCA--TTA---ACNGAATTG-ACGCTAGATGGCGTGCA----AAGA--------ACAGACATT--ATCGGAATTAACGCTAGATGGCGCACGTA-TCT---TACGTAATTATACAGATT-GGTGCGTAGACATCANGACAACTCGCNACCAAGACATGTCGCNCCNAAAGA--AACCCGGGCCCTAATTTTNAAAG-ACAGCT------ACTTGT-----ATA-GCAAG-C--C--TGATAAACA-----TA--T-------------TAGCAGTACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
Reference ( family-7811 ) : GCATACAATATATTTTTTATGGGCGGC-GGAAAGGGTA-GAGAAAAG--AC--GT------TA-A--TGCAAAA-----CGAACAACTAA--TTTTCAAAA-A-ATACT-CGA--TT-CG------TGATA----AATAC-----GA-CCAGCTTT------AAAAA-ACAAAATC--GA-CAGAC-TC--A-T--T-GCAAAATCAAANGATT-C------CGTCGCAAAACGAA-GATCANCGATGC-AAAACCAACG-GTCA--TTA---ACNGAATTG-ACGCTAGATGGCGTGCA----AAGA--------ACAGACATT--ATCGGAATTAACGCTAGATGGCGCACGTA-TCT---TACGTAATTATACAGATT-GGTGCGTAGACATCANGACAACTCGCNACCAAGACATGTCGCNCCNAAAGA--AACCCGGGCCCTAATTTTNAAAG-ACAGCT------ACTTGT-----ATA-GCAAG-C--C--TGATAAACA-----TA--T-------------TAGCAGTACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
gi|1 : GCATACAATATATTTTGTATGGGCGCC-GGAAGAAATA-GAGAAAAG--AC--GT------TC-A--TACCAAA-----CGAACAACTAA--TTTTCAAAA-A-ATATTTCGA--TTTCG------TGATA----AATATCT---GA-CTAGCTTTTTAAAAAAAAA-ATAAAATC--GA-CAGAC-TC--A-T--TAGCAAAATCAAATGACT-C------CGT-GGAAAACGAA-GATCATCGATGC-AAAACCAACA-ATCA--TTA---ACGGAAATG-ACGCTAGATGGCGTACA----AAGA--------ACAGACATT--ATCGGAATTAACGCTCGATGACGCATGTA-TCT---TACGTAATTATACAGATTGGGTGCGTAGACATTACGACAACTCGTAACCAAGATATGTTGCACCAAAAGA--AACCCAG--CCTAATTTTCAAAG-ACAGCT------ACTTGT-----ATATGTAAGCC--C--TAATAAACA-----TA--T-----------------ACTACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
gi|10 : AG--AC--GT------T-------CAAAAAAATCCGAACAATTTA--TTCTCAAAA-------C-CAA--TC-CG----------A----AATGC----------------------AAAAA-ACAAACTTAGGA-CAAAA-TC----------CAAAATCAATAGACT-CTAAATCCATTGCAAAACGAATGATCAACAATGC-AAAATCATCG-GTCA--TTA---ACAGAATTG-
gi|11 : C--AA-CAAAT-TCCGA-C--T-GCAAAATCAGAAGATT-C------CGTCACAAAAC----AATCAACGATAC-AAAAC--ACGAGTCA--TCA-----CGACGTGAACGCTAGATGGCGTGC-----GGGA--------ACAG-CATTGAAT-AAAATTGACG
gi|12 : TGGGCAGC-GGGAAAGAT--GAAAATAG--AC--GT------TA-A--TGCAAAA-----CGAGTAAC--A--TTT--AAAA-A-AAA-----A--TT-AC------TGA-A----AA---------A-CTAGCTT---------AAA-ACCAAATC--AG-CATACTTT--G-T--T-GCAAAA-CTAACGATT-T------C
gi|14 : cTTTTATGGGCGGC-GGAAAGGGTT-AAAAAAAGATAT--GT------TA-A--TGCAACT-----CAAACAGTCAA--TTTTCAAAA-GCATACc
gi|15 : gAACCAATA-GTCA--TTA---ATAGAATTA-ACGCTAGATGGCGTGCA----AAGA--------ACAGA
gi|16 : cgctatA--------ACAGACTTT--CTCGGAATTAACGCTAGATGACGCACA-A-------TACATAA----AC-GATT-GGtgtgaacaatg
gi|17 : AACCAATA-GTCA--TTA---ATAGAATTA-ACGCTAGATGGCGTGCA----AAGA--------A
gi|2 : tGCATACAATATATTTTGTATGGGCGCC-GGAAGAAATA-GAGAAAAG--AC--GT------TC-A--TACCAAA-----CGAACAACTAA--TTTTCAAAA-A-ATATTTCGA--TTTCG------TGATA----AATATCT---GA-CTAGCTTTTTAAAAAAAAA-ATAAAATC--GA-CAGAC-TC--A-T--TAGCAAAATCAAATGACT-C------CGT-GGAAAACGAA-GATCATCGATGC-AAAACCAACA-ATCA--TTA---ACGGAAATG-ACGCTAGATGGCGTACA----AAGA--------ACAGACATT--ATCGGAATTAACGCTCGATGACGCATGTA-TCT---TACGTAATTATACAGATT-GGTGCGTAGACATTACGACAACTCGTAACCAAGATATGTTGCACCAAAAGA--AACCCAG--CCTAA-TTTCAAAG-ACAGCT------ACTTGT-----ATA-GTAAG-C--C--TAATAAACA-----TA--T-------------TA----CACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
gi|3 : TTTTTATGGGTGGT-GGAAAGGGTAAGAAAAACG--AC--GT------CA-T--TACAAAA-----CGAACAACCAG--TTCTCAAAC-ACATACT--GAAATA-CA------TGATA----GATA-------A-C-A---TT------AAGA---CAAAGCCC-GA-CAA----C--A------GCAACAT-AGGTAATT------------GCAAAGTAAACAAACTGCGTTGC-AAATTGAACG-AT------A---ACAGAACTG-ATGCTAAATAATATGCA----AAGA--------ACAGGCATT--AT-GCAATTAACGCTAGATGGCGTATG-A---C---TA-GTCATTA---AGA--------------ATCAAGACAACTCACCACCAAGACTTATCGTCCCTATGGA--AG-CAGGGTCCTCATTTTAAAAGAACAACTCGATCAAC-TATCAAAAATA-ACAAT-CAACAATGATCAATA-----TG--TTATGTATTACATATAGCAGTACATTATGAATGAAAGAAATTC----AAGACAAAATGATATTTTAGTCAAGCTTTTTTCCTTTCAAT-TTCAGCATTAGA
gi|4 : atcgTATGGGCGGC-GGAAAGGGTA-AA-AAAAG--AT--GT------TA-A--TGCAAAA-----CGAACAATCAA--TTTTCAAAACC-ATACT---A-----------------A----AATACAAGCTAA-CCAGCTT---------ATA-ATGAAATC--AA-CAGGC-TCCAA-A--T-GCAAAACC-AACGATTGC------CGACGT---------GAT-AT--ATGC-AAAAGCAACG-GTCA--TTA---ACTGAATTG-ACGCTATATGGCGCGCACCCCAACACCCCCTCCCCCGACATC--ATCTGAATTAACGCTAGAGGGCGC---TAGTCTAGCTATATAATCAT
gi|5 : c-ACAAAGCC--AAGTAGAC-TC--A-TATT-GCAAAATCAA--GATT-C------TACTGTTATACGAACGATCACCGATGT-AAAACCAAC----------------------------TAGATGGCGTACA----AAGA--------ACAG-----------GAATAAACGCTAGATTGCGCACGAG-TCT---TA---AA----AC--------TGTATA---ATCAGGACAACTCGCCATCAAGACAAATCCCTCATTGAGAACAATTC--GCCC-----CTGAAAG-ATAACT------AC-----------A-GCA---C--C--TGATGAGCAAATTGTATTT-------------TAGCAGTGTATTATGAATAAA
gi|6 : TTTATGGGTGGC-AGAAAGGATG-GGGAAAAA--ACAAGTACTCTGTACA--TGCAAAA-----CG--------A--TTTTCCAAA-A-AC------------------------------ATAC---------------T------GAAAA-GCAAA------A-CAAAC-------------CAAGA------GACT-C------CGTTGCAAAACCAACGATCACCGATAT-AAAACCAACA-GCCA--TTA---ACCAAATTG-ACGCTAAATGGCGTGCA----AATA--------ACAATTAAT--ATCTGAATTAATGCTAGATGGCGCGC
gi|7 : GGCTGGAAAGGGCA----AAAAG--AC--GT------GA-A--T-CAAAA-----AGAACA--TAAATTTTTCAAA-----TA-T-CAA--T-----------GATATGCAAAAAC-----AAACCACTCTT------AAAAATAC-ACATC--AA-CAGAC-CC----C--C-GC-ATGCCAAAA-----C------C-------AGCGA---ATCATCCATGC-AAAACCAACA-GTCATTTTA---CCCGACT----CACTAGATGGCGTGtagtctatct
gi|8 : gATGGGCAGT-GGAAAAGGTA----AAATG--AT--GT------TA-AAATTCAAAA-----CGAACAACTGA--TTTTCAAAATC-ACAC--CGA--AT-TGAGTGAATGATAT---GATA------GA-TCAGCTC---------AAA-ACAAAATC--AA-CAGGC-TCT-G-T--T-GCAAAATCA--------C------CGACGTAAAACCAA-
gi|9 : A-TAGAC-TC--AAT--T-GGAAAAGCAATGGATT-T------CGTTGCAAAACAAACGAT----AATGCCAAAACCAGCA-AT-A--TTTTTTACTGAATTG-AAGCTACATGGCGTGCA----A----------------------ATC-GAATTAATGCTAGATGGTGccatca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GTATTCTATAGGTGGTGGAAAGGGTAAATGCAAACGATCAAAAAGTTAGTCAAAAAGCATATAATGAAATACCTGTAGATAAAATCAAGCTAACGATCATCGATACAAAAACATCATAG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 111111111111 11111 55555555555555555555555555555555555555555555555555555555555555 333333333 111111 1111111111111 111 11111111 222222222 22222222222222222222222 11 2222 1111 1 444444444444444444444444444444444 888888888888888888888888888 222 11 1
lowQualScore : 0 4 44444 55 55 222222222222 4 00000 2 55 55555555555555555555555555555555555555555555555555555555555555 4 1 999 3 3 222222222 777777 3333333333333 2 2 3 2 4 44 0 000 2 0 3 8888 33333333 4 66 66 00 666666666 9 33333333333333333333333 1 1 1 1 1 33 6 8888 2222 1 0 555555555555555555555555555555555 0 222222222222222222222222222 2 333 7 88 3 7
lowQualScore : . . ..... .. .. ............ . ..... . .. .............................................................. . . ... . . ......... ...... ............. . . . . . .. . ... . . . .... ........ . .. .. .. ......... . ....................... . . . . . .. . .... .... . . ................................. . ........................... . ... . .. . .
lowQualScore : 6 4 66666 55 55 666666666666 8 00000 8 55 66666666666666666666666666666666666666666666666666666666666666 0 3 666 3 3 888888888 999999 3333333333333 0 0 6 4 0 88 4 444 2 6 3 5555 22222222 8 11 88 66 777777777 3 44444444444444444444444 0 0 0 0 2 88 5 2222 5555 0 0 888888888888888888888888888888888 8 000000000000000000000000000 5 333 3 33 3 3
consensus : GCATACAATATATTTTTTATGGGCGGC-GGAAAGGGTA-GAGAAAAG--AC--GT------TA-A--TGCAAAA-----CGAACAACTAA--TTTTCAAAA-A-ATACT-CGA--TT-CG------TGATA----AATAC-----GA-CCAGCTTT------AAAAA-ACAAAATC--GA-CAGAC-TC--A-T--T-GCAAAATCAAA-GATTC------CGTCGCAAAACGAACG-ATCANCGATG-CAAAACCAACG-GTCA---TTAACNGAATTG-ACGCTAGATGGCGTGCA----AAGA--------ACAGACATT--ATCGGAATTAACGCTAGATGGCGCACGTA-TCT---TACGTAATTATACAGATT-GGTGCGTAGACATCANGACAACTCGCNACCAAGACATGTCGCNCCNAAAGA--AACCCGGGCCCTAATTTTNAAAG-ACAGCT------ACTTGT-----ATA-GCAAG-C--C--TGATAAACA-----TA--T-------------TAGCAGTACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
Reference ( family-7811 ) : GCATACAATATATTTTTTATGGGCGGC-GGAAAGGGTA-GAGAAAAG--AC--GT------TA-A--TGCAAAA-----CGAACAACTAA--TTTTCAAAA-A-ATACT-CGA--TT-CG------TGATA----AATAC-----GA-CCAGCTTT------AAAAA-ACAAAATC--GA-CAGAC-TC--A-T--T-GCAAAATCAAANGATTC------CGTCGCAAAACGAACG-ATCANCGATG-CAAAACCAACG-GTCA---TTAACNGAATTG-ACGCTAGATGGCGTGCA----AAGA--------ACAGACATT--ATCGGAATTAACGCTAGATGGCGCACGTA-TCT---TACGTAATTATACAGATT-GGTGCGTAGACATCANGACAACTCGCNACCAAGACATGTCGCNCCNAAAGA--AACCCGGGCCCTAATTTTNAAAG-ACAGCT------ACTTGT-----ATA-GCAAG-C--C--TGATAAACA-----TA--T-------------TAGCAGTACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
gi|1 : GCATACAATATATTTTGTATGGGCGCC-GGAAGAAATA-GAGAAAAG--AC--GT------TC-A--TACCAAA-----CGAACAACTAA--TTTTCAAAA-A-ATATTTCGA--TTTCG------TGATA----AATATCT---GA-CTAGCTTTTTAAAAAAAAA-ATAAAATC--GA-CAGAC-TC--A-T--TAGCAAAATCAAATGACTC------CGTGG-AAAACGAA-G-ATCATCGATG-CAAAACCAACA-ATCA---TTAACGGAAATG-ACGCTAGATGGCGTACA----AAGA--------ACAGACATT--ATCGGAATTAACGCTCGATGACGCATGTA-TCT---TACGTAATTATACAGATTGGGTGCGTAGACATTACGACAACTCGTAACCAAGATATGTTGCACCAAAAGA--AACCCAG--CCTAATTTTCAAAG-ACAGCT------ACTTGT-----ATATGTAAGCC--C--TAATAAACA-----TA--T-----------------ACTACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
gi|10 : AG--AC--GT------T-------CAAAAAAATCCGAACAATTTA--TTCTCAAAA-------C-CAA--TC-CG----------A----AATGC----------------------AAAAA-ACAAACTTAGGA-CAAAA-TC----------CAAAATCAATAGACTCTAAATCCATTGCAAAACGAATG-ATCAACAATG-CAAAATCATCG-GTCA---TTAACAGAATTG-
gi|11 : C--AA-CAAAT-TCCGA-C--T-GCAAAATCAGAAGATTC------CGTCACAA----AACA-ATCAACGATA-CAAAAC--ACGAGTCA---TCA--CGACGTGAACGCTAGATGGCGTGC-----GGGA--------ACAG-CATTGAAT-AAAATTGACG
gi|12 : TGGGCAGC-GGGAAAGAT--GAAAATAG--AC--GT------TA-A--TGCAAAA-----CGAGTAAC--A--TTT--AAAA-A-AAA-----A--TT-AC------TGA-A----AA---------A-CTAGCTT---------AAA-ACCAAATC--AG-CATACTTT--G-T--T-GCAAAA-CTAACGATTT------C
gi|14 : cTTTTATGGGCGGC-GGAAAGGGTT-AAAAAAAGATAT--GT------TA-A--TGCAACT-----CAAACAGTCAA--TTTTCAAAA-GCATACc
gi|15 : gAACCAATA-GTCA---TTAATAGAATTA-ACGCTAGATGGCGTGCA----AAGA--------ACAGA
gi|16 : cgctatA--------ACAGACTTT--CTCGGAATTAACGCTAGATGACGCACA-A-------TACATAA----AC-GATT-GGtgtgaacaatg
gi|17 : AACCAATA-GTCA---TTAATAGAATTA-ACGCTAGATGGCGTGCA----AAGA--------A
gi|2 : tGCATACAATATATTTTGTATGGGCGCC-GGAAGAAATA-GAGAAAAG--AC--GT------TC-A--TACCAAA-----CGAACAACTAA--TTTTCAAAA-A-ATATTTCGA--TTTCG------TGATA----AATATCT---GA-CTAGCTTTTTAAAAAAAAA-ATAAAATC--GA-CAGAC-TC--A-T--TAGCAAAATCAAATGACTC------CGTGG-AAAACGAA-G-ATCATCGATG-CAAAACCAACA-ATCA---TTAACGGAAATG-ACGCTAGATGGCGTACA----AAGA--------ACAGACATT--ATCGGAATTAACGCTCGATGACGCATGTA-TCT---TACGTAATTATACAGATT-GGTGCGTAGACATTACGACAACTCGTAACCAAGATATGTTGCACCAAAAGA--AACCCAG--CCTAA-TTTCAAAG-ACAGCT------ACTTGT-----ATA-GTAAG-C--C--TAATAAACA-----TA--T-------------TA----CACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
gi|3 : TTTTTATGGGTGGT-GGAAAGGGTAAGAAAAACG--AC--GT------CA-T--TACAAAA-----CGAACAACCAG--TTCTCAAAC-ACATACT--GAAATA-CA------TGATA----GATA-------A-C-A---TT------AAGA---CAAAGCCC-GA-CAA----C--A------GCAACAT-AGGTAATT-----------GCAAAGTAAACA-AACTGCGTTG-CAAATTGAACG-AT-------AACAGAACTG-ATGCTAAATAATATGCA----AAGA--------ACAGGCATT--AT-GCAATTAACGCTAGATGGCGTATG-A---C---TA-GTCATTA---AGA--------------ATCAAGACAACTCACCACCAAGACTTATCGTCCCTATGGA--AG-CAGGGTCCTCATTTTAAAAGAACAACTCGATCAAC-TATCAAAAATA-ACAAT-CAACAATGATCAATA-----TG--TTATGTATTACATATAGCAGTACATTATGAATGAAAGAAATTC----AAGACAAAATGATATTTTAGTCAAGCTTTTTTCCTTTCAAT-TTCAGCATTAGA
gi|4 : atcgTATGGGCGGC-GGAAAGGGTA-AA-AAAAG--AT--GT------TA-A--TGCAAAA-----CGAACAATCAA--TTTTCAAAACC-ATACT---A-----------------A----AATACAAGCTAA-CCAGCTT---------ATA-ATGAAATC--AA-CAGGC-TCCAA-A--T-GCAAAACC-AACGATT--------GCCG----ACG--TG-AT-AT--ATG-CAAAAGCAACG-GTCA---TTAACTGAATTG-ACGCTATATGGCGCGCACCCCAACACCCCCTCCCCCGACATC--ATCTGAATTAACGCTAGAGGGCGC---TAGTCTAGCTATATAATCAT
gi|5 : c-ACAAAGCC--AAGTAGAC-TC--A-TATT-GCAAAATCAA--GATTC------TACTGTTATACGAACG-ATCACCGATG-TAAAACCAA--------------------------CTAGATGGCGTACA----AAGA--------ACA-----------GGAATAAACGCTAGATTGCGCACGAG-TCT---TA---AA----AC--------TGTATA---ATCAGGACAACTCGCCATCAAGACAAATCCCTCATTGAGAACAATTC--GCCC-----CTGAAAG-ATAACT------AC-----------A-GCA---C--C--TGATGAGCAAATTGTATTT-------------TAGCAGTGTATTATGAATAAA
gi|6 : TTTATGGGTGGC-AGAAAGGATG-GGGAAAAA--ACAAGTACTCTGTACA--TGCAAAA-----CG--------A--TTTTCCAAA-A-AC------------------------------ATAC---------------T------GAAAA-GCAAA------A-CAAAC-------------CAAGA------GACTC------CGTTGCAAAACCAACG-ATCACCGATA-TAAAACCAACA-GCCA---TTAACCAAATTG-ACGCTAAATGGCGTGCA----AATA--------ACAATTAAT--ATCTGAATTAATGCTAGATGGCGCGC
gi|7 : GGCTGGAAAGGGCA----AAAAG--AC--GT------GA-A--T-CAAAA-----AGAACA--TAAATTTTTCAAA-----TA-T-CAA--T-----------GATATGCAAAAAC-----AAACCACTCTT------AAAAATAC-ACATC--AA-CAGAC-CC----C--C-GC-----------ATGC-----------CAAAACCAGCGAATCATCCATG-CAAAACCAACA-GTCATT-TTACCCGACT----CACTAGATGGCGTGtagtctatct
gi|8 : gATGGGCAGT-GGAAAAGGTA----AAATG--AT--GT------TA-AAATTCAAAA-----CGAACAACTGA--TTTTCAAAATC-ACAC--CGA--AT-TGAGTGAATGATAT---GATA------GA-TCAGCTC---------AAA-ACAAAATC--AA-CAGGC-TCT-G-T--T-GCAAAATCA-------C------CGACGTAAAACCAACC-ATCA
gi|9 : A-TAGAC-TC--AAT--T-GGAAAAGCAATGGATTT------CGTTGCAAAACAAACG-AT----AATGCCAAAACCAGCA-AT-ATTTTTTACTGAATTG-AAGCTACATGGCGTGCA----A----------------------ATC-GAATTAATGCTAGATGGTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GTATTCTATAGGTGGTGGAAAGGGTAAATGCAAACGATCAAAAAGTTAGTCAAAAAGCATATAATGAAATACCTGTAGATAAAATCAAGCTAACGATCATCGATACAAAAACATCATAG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 111111111111 11111 55555555555555555555555555555555555555555555555555555555555555 333333333 22222 1111111111 11111111 222222222 22222222222222222222222 11 2222 1111 1 444444444444444444444444444444444 888888888888888888888888888 222 11 1
lowQualScore : 0 4 44444 55 55 222222222222 4 00000 2 55 55555555555555555555555555555555555555555555555555555555555555 4 1 999 3 3 222222222 1 44444 2222222222 2 2 2 3 2 4 44 0 44 555 2 0 3 8888 33333333 4 66 66 00 666666666 9 33333333333333333333333 1 1 1 1 1 33 6 8888 2222 1 0 555555555555555555555555555555555 0 222222222222222222222222222 2 333 7 88 3 7
lowQualScore : . . ..... .. .. ............ . ..... . .. .............................................................. . . ... . . ......... . ..... .......... . . . . . . .. . .. ... . . . .... ........ . .. .. .. ......... . ....................... . . . . . .. . .... .... . . ................................. . ........................... . ... . .. . .
lowQualScore : 6 4 66666 55 55 666666666666 8 00000 8 55 66666666666666666666666666666666666666666666666666666666666666 0 3 666 3 3 888888888 6 11111 8888888888 0 0 0 6 4 0 88 4 66 888 2 6 3 5555 22222222 8 11 88 66 777777777 3 44444444444444444444444 0 0 0 0 2 88 5 2222 5555 0 0 888888888888888888888888888888888 8 000000000000000000000000000 5 333 3 33 3 3
consensus : GCATACAATATATTTTTTATGGGCGGC-GGAAAGGGTA-GAGAAAAG--AC--GT------TA-A--TGCAAAA-----CGAACAACTAA--TTTTCAAAA-A-ATACT-CGA--TT-CG------TGATA----AATAC-----GA-CCAGCTTT------AAAAA-ACAAAATC--GA-CAGAC-TC--A-T--T-GCAAAATCA-A-A-GATTC------CGTCGCAAAACGAACG-ATCANCGATGC-AAAACCAACG-GTCA--TTA---ACNGAATTG-ACGCTAGATGGCGTGCA----AAGA--------ACAGACATT--ATCGGAATTAACGCTAGATGGCGCACGTA-TCT---TACGTAATTATACAGATT-GGTGCGTAGACATCANGACAACTCGCNACCAAGACATGTCGCNCCNAAAGA--AACCCGGGCCCTAATTTTNAAAG-ACAGCT------ACTTGT-----ATA-GCAAG-C--C--TGATAAACA-----TA--T-------------TAGCAGTACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
Reference ( family-7811 ) : GCATACAATATATTTTTTATGGGCGGC-GGAAAGGGTA-GAGAAAAG--AC--GT------TA-A--TGCAAAA-----CGAACAACTAA--TTTTCAAAA-A-ATACT-CGA--TT-CG------TGATA----AATAC-----GA-CCAGCTTT------AAAAA-ACAAAATC--GA-CAGAC-TC--A-T--T-GCAAAATCA-A-A-GATTC------CGTCGCAAAACGAACG-ATCANCGATGC-AAAACCAACG-GTCA--TTA---ACNGAATTG-ACGCTAGATGGCGTGCA----AAGA--------ACAGACATT--ATCGGAATTAACGCTAGATGGCGCACGTA-TCT---TACGTAATTATACAGATT-GGTGCGTAGACATCANGACAACTCGCNACCAAGACATGTCGCNCCNAAAGA--AACCCGGGCCCTAATTTTNAAAG-ACAGCT------ACTTGT-----ATA-GCAAG-C--C--TGATAAACA-----TA--T-------------TAGCAGTACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
gi|1 : GCATACAATATATTTTGTATGGGCGCC-GGAAGAAATA-GAGAAAAG--AC--GT------TC-A--TACCAAA-----CGAACAACTAA--TTTTCAAAA-A-ATATTTCGA--TTTCG------TGATA----AATATCT---GA-CTAGCTTTTTAAAAAAAAA-ATAAAATC--GA-CAGAC-TC--A-T--TAGCAAAATCA-A-ATGACTC------CGT-GGAAAACGAA-G-ATCATCGATGC-AAAACCAACA-ATCA--TTA---ACGGAAATG-ACGCTAGATGGCGTACA----AAGA--------ACAGACATT--ATCGGAATTAACGCTCGATGACGCATGTA-TCT---TACGTAATTATACAGATTGGGTGCGTAGACATTACGACAACTCGTAACCAAGATATGTTGCACCAAAAGA--AACCCAG--CCTAATTTTCAAAG-ACAGCT------ACTTGT-----ATATGTAAGCC--C--TAATAAACA-----TA--T-----------------ACTACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
gi|10 : AG--AC--GT------T-------CAAAAAAATCCGAACAATTTA--TTCTCAAAA-------C-CAA--TC-CG----------A----AATGC----------------------AAAAA-ACAAACTTAGGA-CAAAA-TC----------CAAAATCA-ATA-GACTCTAAATCCATTGCAAAACGAATG-ATCAACAATGC-AAAATCATCG-GTCA--TTA---ACAGAATTG-
gi|11 : C--AA-CAAAT-TCCGA-C--T-GCAAAATCAGA-A-GATTC------CGTCACAA----AACA-ATCAACGATAC-AAAAC--ACGAGTCA--TCA-----CGACGTGAACGCTAGATGGCGTGC-----GGGA--------ACAG-CATTGAAT-AAAATTGACG
gi|12 : TGGGCAGC-GGGAAAGAT--GAAAATAG--AC--GT------TA-A--TGCAAAA-----CGAGTAAC--A--TTT--AAAA-A-AAA-----A--TT-AC------TGA-A----AA---------A-CTAGCTT---------AAA-ACCAAATC--AG-CATACTTT--G-T--T-GCAAAACTA-A-C-GATTT------C
gi|14 : cTTTTATGGGCGGC-GGAAAGGGTT-AAAAAAAGATAT--GT------TA-A--TGCAACT-----CAAACAGTCAA--TTTTCAAAA-GCATACc
gi|15 : gAACCAATA-GTCA--TTA---ATAGAATTA-ACGCTAGATGGCGTGCA----AAGA--------ACAGA
gi|16 : cgctatA--------ACAGACTTT--CTCGGAATTAACGCTAGATGACGCACA-A-------TACATAA----AC-GATT-GGtgtgaacaatg
gi|17 : AACCAATA-GTCA--TTA---ATAGAATTA-ACGCTAGATGGCGTGCA----AAGA--------A
gi|2 : tGCATACAATATATTTTGTATGGGCGCC-GGAAGAAATA-GAGAAAAG--AC--GT------TC-A--TACCAAA-----CGAACAACTAA--TTTTCAAAA-A-ATATTTCGA--TTTCG------TGATA----AATATCT---GA-CTAGCTTTTTAAAAAAAAA-ATAAAATC--GA-CAGAC-TC--A-T--TAGCAAAATCA-A-ATGACTC------CGT-GGAAAACGAA-G-ATCATCGATGC-AAAACCAACA-ATCA--TTA---ACGGAAATG-ACGCTAGATGGCGTACA----AAGA--------ACAGACATT--ATCGGAATTAACGCTCGATGACGCATGTA-TCT---TACGTAATTATACAGATT-GGTGCGTAGACATTACGACAACTCGTAACCAAGATATGTTGCACCAAAAGA--AACCCAG--CCTAA-TTTCAAAG-ACAGCT------ACTTGT-----ATA-GTAAG-C--C--TAATAAACA-----TA--T-------------TA----CACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
gi|3 : TTTTTATGGGTGGT-GGAAAGGGTAAGAAAAACG--AC--GT------CA-T--TACAAAA-----CGAACAACCAG--TTCTCAAAC-ACATACT--GAAATA-CA------TGATA----GATA-------A-C-A---TT------AAGA---CAAAGCCC-GA-CAA----C--A------GCAACAT-----A-GGT--------AATTGCAAAGTAAACA-AACTGCGTTGC-AAATTGAACG-AT------A---ACAGAACTG-ATGCTAAATAATATGCA----AAGA--------ACAGGCATT--AT-GCAATTAACGCTAGATGGCGTATG-A---C---TA-GTCATTA---AGA--------------ATCAAGACAACTCACCACCAAGACTTATCGTCCCTATGGA--AG-CAGGGTCCTCATTTTAAAAGAACAACTCGATCAAC-TATCAAAAATA-ACAAT-CAACAATGATCAATA-----TG--TTATGTATTACATATAGCAGTACATTATGAATGAAAGAAATTC----AAGACAAAATGATATTTTAGTCAAGCTTTTTTCCTTTCAAT-TTCAGCATTAGA
gi|4 : atcgTATGGGCGGC-GGAAAGGGTA-AA-AAAAG--AT--GT------TA-A--TGCAAAA-----CGAACAATCAA--TTTTCAAAACC-ATACT---A-----------------A----AATACAAGCTAA-CCAGCTT---------ATA-ATGAAATC--AA-CAGGC-TCCAA-A--T-GCAAAACCA-A-C-GATT--------GCCG----ACG--TG-AT-AT--ATGC-AAAAGCAACG-GTCA--TTA---ACTGAATTG-ACGCTATATGGCGCGCACCCCAACACCCCCTCCCCCGACATC--ATCTGAATTAACGCTAGAGGGCGC---TAGTCTAGCTATATAATCAT
gi|5 : c-ACAAAGCC--AAGTAGAC-TC--A-TATT-GCAAAATCA-A---GATTC------TACTGTTATACGAACG-ATCACCGATGT-AAAACCAA----------------------------CTAGATGGCGTACA----AAGA--------ACA-----------GGAATAAACGCTAGATTGCGCACGAG-TCT---TA---AA----AC--------TGTATA---ATCAGGACAACTCGCCATCAAGACAAATCCCTCATTGAGAACAATTC--GCCC-----CTGAAAG-ATAACT------AC-----------A-GCA---C--C--TGATGAGCAAATTGTATTT-------------TAGCAGTGTATTATGAATAAA
gi|6 : TTTATGGGTGGC-AGAAAGGATG-GGGAAAAA--ACAAGTACTCTGTACA--TGCAAAA-----CG--------A--TTTTCCAAA-A-AC------------------------------ATAC---------------T------GAAAA-GCAAA------A-CAAAC-------------CAAGA--------GACTC------CGTTGCAAAACCAACG-ATCACCGATAT-AAAACCAACA-GCCA--TTA---ACCAAATTG-ACGCTAAATGGCGTGCA----AATA--------ACAATTAAT--ATCTGAATTAATGCTAGATGGCGCGC
gi|7 : GGCTGGAAAGGGCA----AAAAG--AC--GT------GA-A--T-CAAAA-----AGAACA--TAAATTTTTCAAA-----TA-T-CAA--T-----------GATATGCAAAAAC-----AAACCACTCTT------AAAAATAC-ACATC--AA-CAGAC-CC----C--C-GC-------------ATGC-----------CAAAACCAGCGAATCATCCATGC-AAAACCAACA-GTCATTTTA---CCCGACT----CACTAGATGGCGTGtagtctatct
gi|8 : gATGGGCAGT-GGAAAAGGTA----AAATG--AT--GT------TA-AAATTCAAAA-----CGAACAACTGA--TTTTCAAAATC-ACAC--CGA--AT-TGAGTGAATGATAT---GATA------GA-TCAGCTC---------AAA-ACAAAATC--AA-CAGGC-TCT-G-T--T-GCAAAATCA---------C------CGACGTAAAACCAACC-ATCA
gi|9 : A-TAGAC-TC--AAT--T-GGAAAAGCA-ATG-GATTT------CGTTGCAAAACAAACG-AT----AATGCCAAAACCAGCA-AT-A--TTTTTTACTGAATTG-AAGCTACATGGCGTGCA----A----------------------ATC-GAATTAATGCTAGATGGTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GTATTCTATAGGTGGTGGAAAGGGTAAATGCAAACGATCAAAAAGTTAGTCAAAAAGCATATAATGAAATACCTGTAGATAAAATCAAGCTAACGATCATCGATACAAAAACATCATAG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 111111111111 11111 55555555555555555555555555555555555555555555555555555555555555 333333333 22222 1111111111 11111111 222222222 22222222222222222222222 11 2222 1111 1 444444444444444444444444444444444 888888888888888888888888888 222 11 1
lowQualScore : 0 4 44444 55 55 222222222222 4 00000 2 55 55555555555555555555555555555555555555555555555555555555555555 4 1 999 3 3 222222222 1 44444 2222222222 2 2 2 3 2 4 44 0 44 555 2 0 3 8888 33333333 4 66 66 00 666666666 9 33333333333333333333333 1 1 1 1 1 33 6 8888 2222 1 0 555555555555555555555555555555555 0 222222222222222222222222222 2 333 7 88 3 7
lowQualScore : . . ..... .. .. ............ . ..... . .. .............................................................. . . ... . . ......... . ..... .......... . . . . . . .. . .. ... . . . .... ........ . .. .. .. ......... . ....................... . . . . . .. . .... .... . . ................................. . ........................... . ... . .. . .
lowQualScore : 6 4 66666 55 55 666666666666 8 00000 8 55 66666666666666666666666666666666666666666666666666666666666666 0 3 666 3 3 888888888 6 11111 8888888888 0 0 0 6 4 0 88 4 66 888 2 6 3 5555 22222222 8 11 88 66 777777777 3 44444444444444444444444 0 0 0 0 2 88 5 2222 5555 0 0 888888888888888888888888888888888 8 000000000000000000000000000 5 333 3 33 3 3
consensus : GCATACAATATATTTTTTATGGGCGGC-GGAAAGGGTA-GAGAAAAG--AC--GT------TA-A--TGCAAAA-----CGAACAACTAA--TTTTCAAAA-A-ATACT-CGA--TT-CG------TGATA----AATAC-----GA-CCAGCTTT------AAAAA-ACAAAATC--GA-CAGAC-TC--A-T--T-GCAAAATCA-A-A-GATTC------CGTCGCAAAACGAACG-ATCANCGATGC-AAAACCAACG-GTCA--TTA---ACNGAATTG-ACGCTAGATGGCGTGCA----AAGA--------ACAGACATT--ATCGGAATTAACGCTAGATGGCGCACGTA-TCT---TACGTAATTATACAGATT-GGTGCGTAGACATCANGACAACTCGCNACCAAGACATGTCGCNCCNAAAGA--AACCCGGGCCCTAATTTTNAAAG-ACAGCT------ACTTGT-----ATA-GCAAG-C--C--TGATAAACA-----TA--T-------------TAGCAGTACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
Reference ( family-7811 ) : GCATACAATATATTTTTTATGGGCGGC-GGAAAGGGTA-GAGAAAAG--AC--GT------TA-A--TGCAAAA-----CGAACAACTAA--TTTTCAAAA-A-ATACT-CGA--TT-CG------TGATA----AATAC-----GA-CCAGCTTT------AAAAA-ACAAAATC--GA-CAGAC-TC--A-T--T-GCAAAATCA-A-A-GATTC------CGTCGCAAAACGAACG-ATCANCGATGC-AAAACCAACG-GTCA--TTA---ACNGAATTG-ACGCTAGATGGCGTGCA----AAGA--------ACAGACATT--ATCGGAATTAACGCTAGATGGCGCACGTA-TCT---TACGTAATTATACAGATT-GGTGCGTAGACATCANGACAACTCGCNACCAAGACATGTCGCNCCNAAAGA--AACCCGGGCCCTAATTTTNAAAG-ACAGCT------ACTTGT-----ATA-GCAAG-C--C--TGATAAACA-----TA--T-------------TAGCAGTACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
gi|1 : GCATACAATATATTTTGTATGGGCGCC-GGAAGAAATA-GAGAAAAG--AC--GT------TC-A--TACCAAA-----CGAACAACTAA--TTTTCAAAA-A-ATATTTCGA--TTTCG------TGATA----AATATCT---GA-CTAGCTTTTTAAAAAAAAA-ATAAAATC--GA-CAGAC-TC--A-T--TAGCAAAATCA-A-ATGACTC------CGT-GGAAAACGAA-G-ATCATCGATGC-AAAACCAACA-ATCA--TTA---ACGGAAATG-ACGCTAGATGGCGTACA----AAGA--------ACAGACATT--ATCGGAATTAACGCTCGATGACGCATGTA-TCT---TACGTAATTATACAGATTGGGTGCGTAGACATTACGACAACTCGTAACCAAGATATGTTGCACCAAAAGA--AACCCAG--CCTAATTTTCAAAG-ACAGCT------ACTTGT-----ATATGTAAGCC--C--TAATAAACA-----TA--T-----------------ACTACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
gi|10 : AG--AC--GT------T-------CAAAAAAATCCGAACAATTTA--TTCTCAAAA-------C-CAA--TC-CG----------A----AATGC----------------------AAAAA-ACAAACTTAGGA-CAAAA-TC----------CAAAATCA-ATA-GACTCTAAATCCATTGCAAAACGAATG-ATCAACAATGC-AAAATCATCG-GTCA--TTA---ACAGAATTG-
gi|11 : C--AA-CAAAT-TCCGA-C--T-GCAAAATCAGA-A-GATTC------CGTCACAA----AACA-ATCAACGATAC-AAAAC--ACGAGTCA--TCA-----CGACGTGAACGCTAGATGGCGTGC-----GGGA--------ACAG-CATTGAAT-AAAATTGACG
gi|12 : TGGGCAGC-GGGAAAGAT--GAAAATAG--AC--GT------TA-A--TGCAAAA-----CGAGTAAC--A--TTT--AAAA-A-AAA-----A--TT-AC------TGA-A----AA---------A-CTAGCTT---------AAA-ACCAAATC--AG-CATACTTT--G-T--T-GCAAAACTA-A-C-GATTT------C
gi|14 : cTTTTATGGGCGGC-GGAAAGGGTT-AAAAAAAGATAT--GT------TA-A--TGCAACT-----CAAACAGTCAA--TTTTCAAAA-GCATACc
gi|15 : gAACCAATA-GTCA--TTA---ATAGAATTA-ACGCTAGATGGCGTGCA----AAGA--------ACAGA
gi|16 : cgctatA--------ACAGACTTT--CTCGGAATTAACGCTAGATGACGCACA-A-------TACATAA----AC-GATT-GGtgtgaacaatg
gi|17 : AACCAATA-GTCA--TTA---ATAGAATTA-ACGCTAGATGGCGTGCA----AAGA--------A
gi|2 : tGCATACAATATATTTTGTATGGGCGCC-GGAAGAAATA-GAGAAAAG--AC--GT------TC-A--TACCAAA-----CGAACAACTAA--TTTTCAAAA-A-ATATTTCGA--TTTCG------TGATA----AATATCT---GA-CTAGCTTTTTAAAAAAAAA-ATAAAATC--GA-CAGAC-TC--A-T--TAGCAAAATCA-A-ATGACTC------CGT-GGAAAACGAA-G-ATCATCGATGC-AAAACCAACA-ATCA--TTA---ACGGAAATG-ACGCTAGATGGCGTACA----AAGA--------ACAGACATT--ATCGGAATTAACGCTCGATGACGCATGTA-TCT---TACGTAATTATACAGATT-GGTGCGTAGACATTACGACAACTCGTAACCAAGATATGTTGCACCAAAAGA--AACCCAG--CCTAA-TTTCAAAG-ACAGCT------ACTTGT-----ATA-GTAAG-C--C--TAATAAACA-----TA--T-------------TA----CACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
gi|3 : TTTTTATGGGTGGT-GGAAAGGGTAAGAAAAACG--AC--GT------CA-T--TACAAAA-----CGAACAACCAG--TTCTCAAAC-ACATACT--GAAATA-CA------TGATA----GATA-------A-C-A---TT------AAGA---CAAAGCCC-GA-CAA----C--A------GCAACAT-----A-GGT--------AATTGCAAAGTAAACA-AACTGCGTTGC-AAATTGAACG-AT------A---ACAGAACTG-ATGCTAAATAATATGCA----AAGA--------ACAGGCATT--AT-GCAATTAACGCTAGATGGCGTATG-A---C---TA-GTCATTA---AGA--------------ATCAAGACAACTCACCACCAAGACTTATCGTCCCTATGGA--AG-CAGGGTCCTCATTTTAAAAGAACAACTCGATCAAC-TATCAAAAATA-ACAAT-CAACAATGATCAATA-----TG--TTATGTATTACATATAGCAGTACATTATGAATGAAAGAAATTC----AAGACAAAATGATATTTTAGTCAAGCTTTTTTCCTTTCAAT-TTCAGCATTAGA
gi|4 : atcgTATGGGCGGC-GGAAAGGGTA-AA-AAAAG--AT--GT------TA-A--TGCAAAA-----CGAACAATCAA--TTTTCAAAACC-ATACT---A-----------------A----AATACAAGCTAA-CCAGCTT---------ATA-ATGAAATC--AA-CAGGC-TCCAA-A--T-GCAAAACCA-A-C-GATT--------GCCG----ACG--TG-AT-AT--ATGC-AAAAGCAACG-GTCA--TTA---ACTGAATTG-ACGCTATATGGCGCGCACCCCAACACCCCCTCCCCCGACATC--ATCTGAATTAACGCTAGAGGGCGC---TAGTCTAGCTATATAATCAT
gi|5 : c-ACAAAGCC--AAGTAGAC-TC--A-TATT-GCAAAATCA-A---GATTC------TACTGTTATACGAACG-ATCACCGATGT-AAAACCAA----------------------------CTAGATGGCGTACA----AAGA--------ACA-----------GGAATAAACGCTAGATTGCGCACGAG-TCT---TA---AA----AC--------TGTATA---ATCAGGACAACTCGCCATCAAGACAAATCCCTCATTGAGAACAATTC--GCCC-----CTGAAAG-ATAACT------AC-----------A-GCA---C--C--TGATGAGCAAATTGTATTT-------------TAGCAGTGTATTATGAATAAA
gi|6 : TTTATGGGTGGC-AGAAAGGATG-GGGAAAAA--ACAAGTACTCTGTACA--TGCAAAA-----CG--------A--TTTTCCAAA-A-AC------------------------------ATAC---------------T------GAAAA-GCAAA------A-CAAAC-------------CAAGA--------GACTC------CGTTGCAAAACCAACG-ATCACCGATAT-AAAACCAACA-GCCA--TTA---ACCAAATTG-ACGCTAAATGGCGTGCA----AATA--------ACAATTAAT--ATCTGAATTAATGCTAGATGGCGCGC
gi|7 : GGCTGGAAAGGGCA----AAAAG--AC--GT------GA-A--T-CAAAA-----AGAACA--TAAATTTTTCAAA-----TA-T-CAA--T-----------GATATGCAAAAAC-----AAACCACTCTT------AAAAATAC-ACATC--AA-CAGAC-CC----C--C-GC-------------ATGC-----------CAAAACCAGCGAATCATCCATGC-AAAACCAACA-GTCATTTTA---CCCGACT----CACTAGATGGCGTGtagtctatct
gi|8 : gATGGGCAGT-GGAAAAGGTA----AAATG--AT--GT------TA-AAATTCAAAA-----CGAACAACTGA--TTTTCAAAATC-ACAC--CGA--AT-TGAGTGAATGATAT---GATA------GA-TCAGCTC---------AAA-ACAAAATC--AA-CAGGC-TCT-G-T--T-GCAAAATCA---------C------CGACGTAAAACCAACC-ATCA
gi|9 : A-TAGAC-TC--AAT--T-GGAAAAGCA-ATG-GATTT------CGTTGCAAAACAAACG-AT----AATGCCAAAACCAGCA-AT-A--TTTTTTACTGAATTG-AAGCTACATGGCGTGCA----A----------------------ATC-GAATTAATGCTAGATGGTG
blockSeqs : T AAGAA AT AA ACTCTGTACA G AAATC T AT AATATTTCGATTTCGTGATAAATATCTGACTAGCTTTTTAAAAA T C AGG G T CGACT T ATA TAAATCCATT C G T A A C GA TT TTT A A CCCC CCCCCTCC A GA CG TAGTCTAGC C TTATACAGATTGGTGCGTAGAC C A A A A AC C GGGT TCAT C A CGATCAACTATCAAAAATAACAATCAACAA TGTTATGTATTACATATAGC G AAA T AT A A
blockSeqs : . TAAA . . TAAAA G . C . TCACACCGAATTGAGTGAATGATATGATAGATCAGCTC . A CG . . CAAAT T GAA CGTC C G C . A . G . . C . . . A . CG TATCT C ACTGTATA A C C T T . T AG TAA A . ACTTGTATAGTAAGCC AATTGTATTTTAGC G . . . . .
blockSeqs : . AGAG . . TAA A . T . TATCAATGATATGCAAAAACAAACCACTCTTA . A A . . ATATT C AAT AATT G A C . T . A . . A . . . A . CT AGTCT T TTAAGA G C T T G . . GC . G . ACAGCACC TATTA .
blockSeqs : . GGGG . . TAA A . C . ACATACTGAAATACATGATAGATAACATTA . G A . . ATTA T ATG TACT C G T . G . A . . A . . . G . CT AC .
blockSeqs : . GAA . . TCA G . C . CCATACTAAAATACAAGCTAACCAGCTT . A G . . TGTT T AC CGTT T G C . T . A . . G . . . A . A A .
blockSeqs : . AAA . . CAT G . T . AAAAATTACTGAAAAACTAGCTT . G A . . AATT C AC CGAC C C C . C . G . . A . . . T . G
blockSeqs : . A . . TAA T . T . CCAATCCGAAATGCA . A A . . GTT T A CGTT C C C . C . G . . T . . . . . G
blockSeqs : . A . . GAA . . . . AACATACTG . A A . . CC T A CGT T C C . T . A . . C . . . . . C
blockSeqs : . . T . . . . . . A . . A G . GCC C A C . . . A . . C . . . .
blockSeqs : . . . . . . . . . . . A . . T . .
blockSeqs : . . . . . . . . . .
blockSeqCons : ATT****** CGTT******
originalCons : GCATACAATATATTTTTTATGGGCGGC-GGAAAGGGTA-GAGAAAAG--AC--GT------TA-A--TGCAAAA-----CGAACAACTAA--TTTTCAAAA-A-ATACT-CGA--TT-CG------TGATA----AATAC-----GA-CCAGCTTT------AAAAA-ACAAAATC--GA-CAGAC-TC--A-T--T-GCAAAATCA-A-A-GATTC------CGTCGCAAAACGAACG-ATCANCGATGC-AAAACCAACG-GTCA--TTA---ACNGAATTG-ACGCTAGATGGCGTGCA----AAGA--------ACAGACATT--ATCGGAATTAACGCTAGATGGCGCACGTA-TCT---TACGTAATTATACAGATT-GGTGCGTAGACATCANGACAACTCGCNACCAAGACATGTCGCNCCNAAAGA--AACCCGGGCCCTAATTTTNAAAG-ACAGCT------ACTTGT-----ATA-GCAAG-C--C--TGATAAACA-----TA--T-------------TAGCAGTACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
finalCons : GCATACAATATATTTTTTATGGGCGGC-GGAAAGGGTA-GAGAAAAG--AC--GT------TA-A--TGCAAAA-----CGAACAACTAA--TTTTCAAAA-A-ATACT-CGA--TT-CG------TGATA----AATAC-----GA-CCAGCTTT------AAAAA-ACAAAATC--GA-CAGAC-TCATT------GCAAAATCA-A-A-GATTCCGTT------GCAAAACGAACG-ATCANCGATGC-AAAACCAACG-GTCA--TTA---ACNGAATTG-ACGCTAGATGGCGTGCA----AAGA--------ACAGACATT--ATCGGAATTAACGCTAGATGGCGCACGTA-TCT---TACGTAATTATACAGATT-GGTGCGTAGACATCANGACAACTCGCNACCAAGACATGTCGCNCCNAAAGA--AACCCGGGCCCTAATTTTNAAAG-ACAGCT------ACTTGT-----ATA-GCAAG-C--C--TGATAAACA-----TA--T-------------TAGCAGTACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GTATTCTATAGGTGGTGGAAAGGGTAAATGCAAACGATCAAAAAGTTAGTCAAAAAGCATATAATGAAATACCTGTAGATAAAATCAAGCTAACGATCATCGATACAAAAACATCATAG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 111111111111 11111 55555555555555555555555555555555555555555555555555555555555555 333333333 22222222222222222222 11111111 222222222 22222222222222222222222 11 2222 1111 1 444444444444444444444444444444444 888888888888888888888888888 222 11 1
lowQualScore : 0 4 44444 55 55 222222222222 4 00000 2 55 55555555555555555555555555555555555555555555555555555555555555 4 1 999 3 3 222222222 1 55555555555555555555 3 1 4 3 2 4 44 0 44 555 2 0 3 8888 33333333 4 66 66 00 666666666 9 33333333333333333333333 1 1 1 1 1 33 6 8888 2222 1 0 555555555555555555555555555555555 0 222222222222222222222222222 2 333 7 88 3 7
lowQualScore : . . ..... .. .. ............ . ..... . .. .............................................................. . . ... . . ......... . .................... . . . . . . .. . .. ... . . . .... ........ . .. .. .. ......... . ....................... . . . . . .. . .... .... . . ................................. . ........................... . ... . .. . .
lowQualScore : 6 4 66666 55 55 666666666666 8 00000 8 55 66666666666666666666666666666666666666666666666666666666666666 0 3 666 3 3 888888888 6 77777777777777777777 6 2 3 6 4 0 88 4 66 888 2 6 6 5555 22222222 8 11 88 66 777777777 3 44444444444444444444444 0 0 0 0 2 88 5 2222 5555 0 0 888888888888888888888888888888888 8 000000000000000000000000000 5 333 3 33 3 3
consensus : GCATACAATATATTTTTTATGGGCGGC-GGAAAGGGTA-GAGAAAAG--AC--GT------TA-A--TGCAAAA-----CGAACAACTAA--TTTTCAAAA-A-ATACT-CGA--TT-CG------TGATA----AATAC-----GA-CCAGCTTT------AAAAA-ACAAAATC--GA-CAGAC-TC--A-T--T-GCAAAATCA-A-A-GATT-C------CGTTG-CAAAACGAACG-ATCANCGATGC-AAAACCAACG-GTCA--TTA---ACNGAATTGA-CGCTAGATGGCGTGCA----AAGA--------ACAGACATT--ATCGGAATTAACGCTAGATGGCGCACGTA-TCT---TACGTAATTATACAGATT-GGTGCGTAGACATCANGACAACTCGCNACCAAGACATGTCGCNCCNAAAGA--AACCCGGGCCCTAATTTTNAAAG-ACAGCT------ACTTGT-----ATA-GCAAG-C--C--TGATAAACA-----TA--T-------------TAGCAGTACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
Reference ( family-7811 ) : GCATACAATATATTTTTTATGGGCGGC-GGAAAGGGTA-GAGAAAAG--AC--GT------TA-A--TGCAAAA-----CGAACAACTAA--TTTTCAAAA-A-ATACT-CGA--TT-CG------TGATA----AATAC-----GA-CCAGCTTT------AAAAA-ACAAAATC--GA-CAGAC-TC--A-T--T-GCAAAATCA-A-A-GATT-C------CGTTG-CAAAACGAACG-ATCANCGATGC-AAAACCAACG-GTCA--TTA---ACNGAATTGA-CGCTAGATGGCGTGCA----AAGA--------ACAGACATT--ATCGGAATTAACGCTAGATGGCGCACGTA-TCT---TACGTAATTATACAGATT-GGTGCGTAGACATCANGACAACTCGCNACCAAGACATGTCGCNCCNAAAGA--AACCCGGGCCCTAATTTTNAAAG-ACAGCT------ACTTGT-----ATA-GCAAG-C--C--TGATAAACA-----TA--T-------------TAGCAGTACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
gi|1 : GCATACAATATATTTTGTATGGGCGCC-GGAAGAAATA-GAGAAAAG--AC--GT------TC-A--TACCAAA-----CGAACAACTAA--TTTTCAAAA-A-ATATTTCGA--TTTCG------TGATA----AATATCT---GA-CTAGCTTTTTAAAAAAAAA-ATAAAATC--GA-CAGAC-TC--A-T--TAGCAAAATCA-A-ATGACT-C------CG-TG-GAAAACGAA-G-ATCATCGATGC-AAAACCAACA-ATCA--TTA---ACGGAAATGA-CGCTAGATGGCGTACA----AAGA--------ACAGACATT--ATCGGAATTAACGCTCGATGACGCATGTA-TCT---TACGTAATTATACAGATTGGGTGCGTAGACATTACGACAACTCGTAACCAAGATATGTTGCACCAAAAGA--AACCCAG--CCTAATTTTCAAAG-ACAGCT------ACTTGT-----ATATGTAAGCC--C--TAATAAACA-----TA--T-----------------ACTACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
gi|10 : AG--AC--GT------T-------CAAAAAAATCCGAACAATTTA--TTCTCAAAA-------C-CAA--TC-CG----------A----AATGC----------------------AAAAA-ACAAACTTAGGA-CAAAA-TC----------CAAAATCA-ATA-GACT-CTAAATCCATTG-CAAAACGAATG-ATCAACAATGC-AAAATCATCG-GTCA--TTA---ACAGAATTG
gi|11 : C--AA-CAAAT-TCCGA-C--T-GCAAAATCAGA-A-GATT-C------CGTCA-CAAAACAA-----TCAACGATAC-AAAAC--ACGAGTCA--TCA-----CGACGTGAACGCTAGATGGCGTGC-----GGGA--------ACAG-CATTGAAT-AAAATTGACG
gi|12 : TGGGCAGC-GGGAAAGAT--GAAAATAG--AC--GT------TA-A--TGCAAAA-----CGAGTAAC--A--TTT--AAAA-A-AAA-----A--TT-AC------TGA-A----AA---------A-CTAGCTT---------AAA-ACCAAATC--AG-CATACTTT--G-T--T-GCAAAACTA-A-C-GATT-T------C
gi|14 : cTTTTATGGGCGGC-GGAAAGGGTT-AAAAAAAGATAT--GT------TA-A--TGCAACT-----CAAACAGTCAA--TTTTCAAAA-GCATACc
gi|15 : gAACCAATA-GTCA--TTA---ATAGAATTAA-CGCTAGATGGCGTGCA----AAGA--------ACAGA
gi|16 : cgctatA--------ACAGACTTT--CTCGGAATTAACGCTAGATGACGCACA-A-------TACATAA----AC-GATT-GGtgtgaacaatg
gi|17 : AACCAATA-GTCA--TTA---ATAGAATTAA-CGCTAGATGGCGTGCA----AAGA--------A
gi|2 : tGCATACAATATATTTTGTATGGGCGCC-GGAAGAAATA-GAGAAAAG--AC--GT------TC-A--TACCAAA-----CGAACAACTAA--TTTTCAAAA-A-ATATTTCGA--TTTCG------TGATA----AATATCT---GA-CTAGCTTTTTAAAAAAAAA-ATAAAATC--GA-CAGAC-TC--A-T--TAGCAAAATCA-A-ATGACT-C------CG-TG-GAAAACGAA-G-ATCATCGATGC-AAAACCAACA-ATCA--TTA---ACGGAAATGA-CGCTAGATGGCGTACA----AAGA--------ACAGACATT--ATCGGAATTAACGCTCGATGACGCATGTA-TCT---TACGTAATTATACAGATT-GGTGCGTAGACATTACGACAACTCGTAACCAAGATATGTTGCACCAAAAGA--AACCCAG--CCTAA-TTTCAAAG-ACAGCT------ACTTGT-----ATA-GTAAG-C--C--TAATAAACA-----TA--T-------------TA----CACATTGTGAATAAAAG---TTCTTGAAAGACCAA--GATATTTT-GTCAATTATTTTCCCTTTCAATAATCAGCATCAGA
gi|3 : TTTTTATGGGTGGT-GGAAAGGGTAAGAAAAACG--AC--GT------CA-T--TACAAAA-----CGAACAACCAG--TTCTCAAAC-ACATACT--GAAATA-CA------TGATA----GATA-------A-C-A---TT------AAGA---CAAAGCCC-GA-CAA----C--A------GCAACAT-----A-GGT---------AATTG-CAAAGTAAACA-AACTGCGTTGC-AAATTGAACG-AT------A---ACAGAACTGA-TGCTAAATAATATGCA----AAGA--------ACAGGCATT--AT-GCAATTAACGCTAGATGGCGTATG-A---C---TA-GTCATTA---AGA--------------ATCAAGACAACTCACCACCAAGACTTATCGTCCCTATGGA--AG-CAGGGTCCTCATTTTAAAAGAACAACTCGATCAAC-TATCAAAAATA-ACAAT-CAACAATGATCAATA-----TG--TTATGTATTACATATAGCAGTACATTATGAATGAAAGAAATTC----AAGACAAAATGATATTTTAGTCAAGCTTTTTTCCTTTCAAT-TTCAGCATTAGA
gi|4 : atcgTATGGGCGGC-GGAAAGGGTA-AA-AAAAG--AT--GT------TA-A--TGCAAAA-----CGAACAATCAA--TTTTCAAAACC-ATACT---A-----------------A----AATACAAGCTAA-CCAGCTT---------ATA-ATGAAATC--AA-CAGGC-TCCAA-A--T-GCAAAACCA-A-C-GATTGC------CG--------ACG--TG-AT-AT--ATGC-AAAAGCAACG-GTCA--TTA---ACTGAATTGA-CGCTATATGGCGCGCACCCCAACACCCCCTCCCCCGACATC--ATCTGAATTAACGCTAGAGGGCGC---TAGTCTAGCTATATAATCAT
gi|5 : c-ACAAAGCC--AAGTAGAC-TC--A-TATT-GCAAAATCA-A---GATT-C------TACTG-TTATACGAACG-ATCACCGATGT-AAAACCAA----------------------------CTAGATGGCGTACA----AAGA--------ACA-----------GGAATAAACGCTAGATTGCGCACGAG-TCT---TA---AA----AC--------TGTATA---ATCAGGACAACTCGCCATCAAGACAAATCCCTCATTGAGAACAATTC--GCCC-----CTGAAAG-ATAACT------AC-----------A-GCA---C--C--TGATGAGCAAATTGTATTT-------------TAGCAGTGTATTATGAATAAA
gi|6 : TTTATGGGTGGC-AGAAAGGATG-GGGAAAAA--ACAAGTACTCTGTACA--TGCAAAA-----CG--------A--TTTTCCAAA-A-AC------------------------------ATAC---------------T------GAAAA-GCAAA------A-CAAAC-------------CAAGA--------GACT-C------CGTTG-CAAAACCAACG-ATCACCGATAT-AAAACCAACA-GCCA--TTA---ACCAAATTGA-CGCTAAATGGCGTGCA----AATA--------ACAATTAAT--ATCTGAATTAATGCTAGATGGCGCGC
gi|7 : GGCTGGAAAGGGCA----AAAAG--AC--GT------GA-A--T-CAAAA-----AGAACA--TAAATTTTTCAAA-----TA-T-CAA--T-----------GATATGCAAAAAC-----AAACCACTCTT------AAAAATAC-ACATC--AA-CAGAC-CC----C--C-GCA--------------------------TGCCAAAACCAGCGAATCATCCATGC-AAAACCAACA-GTCATTTTA---CCCGACT----CACTAGATGGCGTGtagtctatct
gi|8 : gATGGGCAGT-GGAAAAGGTA----AAATG--AT--GT------TA-AAATTCAAAA-----CGAACAACTGA--TTTTCAAAATC-ACAC--CGA--AT-TGAGTGAATGATAT---GATA------GA-TCAGCTC---------AAA-ACAAAATC--AA-CAGGC-TCT-G-T--T-GCAAAATCA----------C------CGACG-TAAAACCAACC-ATCA
gi|9 : A-TAGAC-TC--AAT--T-GGAAAAGCA-ATG-GATT-T------CGTTG-CAAAACAAACG-AT----AATGCCAAAACCAGCA-AT-A--TTTTTTACTGAATTGA-AGCTACATGGCGTGCA----A----------------------ATC-GAATTAATGCTAGATGGTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GTATTCTATAGGTGGTGGAAAGGGTAAATGCAAACGATCAAAAAGTTAGTCAAAAAGCATATAATGAAATACCTGTAGATAAAATCAAGCTAACGATCATCGATACAAAAACATCATAG