lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111 1111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 1111 11111 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 33333333333 3333333333333333333 333333 222222 111 7777777777777777777777777777777777777777777 2222 3333333 333333333 22 0000000000000000 11111 3333333333333333 22222 7777777777777777777777777777777777777777777777 11 222 11 1 1 11 2222 1 55555555555555 1 4444444444444 2 1 111111 22222 11 1 99999999999999999999999999999999999999999999999999999 1 3333333333 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 222222222 444 11 444444444 333333333333 11 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 22 888888 1 1 33 11 55555 22 1 111 11 2222222222 5555555555555555555555555 22222222222 11 888888888888888 11 66666 11 11 1
lowQualScore : 3 2 0 2222 44444 6 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111 7777777777777777777 4 555555 4 4 888888 999 5 5 8888888888888888888888888888888888888888888 77 5 9999 9999999 8 444444444 0 55 9999999999999999 8 66666 8 8 6666666666666666 66666 5 5 1 1111111111111111111111111111111111111111111111 6 11 555 3 11 8 3 3 6 0 0 22 6 1111 7 9 99999999999999 0 7 3333333333333 3 0 3333 8 8 8 8 5 5 0 5 5 1 5 1 0 5 5 0 5 666666 1 77 5 77777 6 33 5 1 3 44444444444444444444444444444444444444444444444444444 22 2 5 0000000000 77 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 3 888888888 000 8 33 000000000 444444444444 33 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 8 8 0 555555 3 8 8 5 0 11 2 88 4 00000 00 5 111 55 5555555555 6 6 2 9999999999999999999999999 44444444444 22 4 111111111111111 2 7 44 0 0 6 11111 77 2 6 22 7
lowQualScore : . . . .... ..... . ............................................................................................ ........... ................... . ...... . . ...... ... . . ........................................... .. . .... ....... . ......... . .. ................ . ..... . . ................ ..... . . . .............................................. . .. ... . .. . . . . . . .. . .... . . .............. . . ............. . . .... . . . . . . . . . . . . . . . . . ...... . .. . ..... . .. . . . ..................................................... .. . . .......... .. ............................................................................................. . . ......... ... . .. ......... ............ .. .................................................................................................................................................................................................................................. .. . . . ...... . . . . . .. . .. . ..... .. . ... .. .......... . . . ......................... ........... .. . ............... . . .. . . . ..... .. . . .. .
lowQualScore : 5 7 1 1111 55555 7 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 55555555555 4444444444444444444 0 888888 0 0 333333 333 7 7 6666666666666666666666666666666666666666666 99 7 4444 5555555 0 666666666 8 66 6666666666666666 0 66666 0 0 6666666666666666 44444 7 4 0 8888888888888888888888888888888888888888888888 7 00 000 0 00 0 2 2 0 0 0 55 0 2222 0 8 88888888888888 0 0 0000000000000 0 0 8888 0 0 0 0 7 7 7 7 7 7 7 7 7 7 7 1 7 444444 4 99 7 11111 6 66 7 4 7 77777777777777777777777777777777777777777777777777777 00 4 7 7777777777 99 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 222222222 222 8 88 000000000 888888888888 88 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 22 0 0 8 222222 8 0 0 0 0 22 5 33 7 77777 00 8 777 88 0000000000 7 7 5 8888888888888888888888888 55555555555 66 8 999999999999999 2 0 00 7 7 0 00000 55 5 0 00 0
consensus : GCAGTTGGCAGAACGGCATTGGACCAAC----AT---TGGACCGAC-ATTG-ATTATCACTGTTGGATCACTGACATTGTTCCAACATCGGACCGACGTTGAATTATTCTAACTG-TG--GGATTCA---TTGAC-ATCG-GTCCAACGACATT--GGACCGA---CGTTGTAA-TTATC--ACTG-TGGGA-----TCATTG-ACA-T-GTTTCCAA-CGT-CGGACCGA-CGTTG-T-TATT-----TTNAGT-GT-T-GGTTGGA-TTG-ACA-T--CG--GT-CCAATGT-TTGGACCGACA--TTGTT-GAA--C-AATNGTTGGGACATAGATCAT--TG--TGT-CAAA--TGTT-G--AT-TCA-AT-ATC--TA-TA-GAGTTCT-ACTGCTC-----ACTGTT-GGCACAAACACACAGAACCAAC---------GT----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAATAAATGGCTA--TA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAGGAACAATTAAATTCAAACTTT-AACTA----TTN-AGTTTACA-ACTTCAACAG-T--------TTAAAAACAATT-TACATGTTAGGCCTTCTCAA-CTTGCCA-CA-TA-ACTTTTCTG-CA-CTCGTGACT-GAAA-GTCATCCCCG-CCAAGAAGAACTGTGATGT-CA-CTGTCGCA-TCACTA------GAT--CTCTCTGTCTGATG-CTTTTT----CTTAGTAGGNCT-ATGGATGCCAGCAGACCGC---ATAA---TTATGTAA-GTA--G--G--GCCNT-AT--A-T-AT--NTTTTTTAATTTGATATTC-TC----------ATT--AGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTCTCCTGT-TAGTT-TGATCATGCGGGTATCCA-TNTATT-ATT-GTTTATATCATCCGCCC--TTAA---------TAAAT------ATTA--TTTGATA--ATTT--AT-TNC------TAA---TT-CATTTTGTTTT-CA-GTC-TGGGAGTT-TCGC-AGA-AAAAGACTAT-TG--CTCGTT---TA-GGACT--AGC----ATAC-GGATTCCAGA-GTTA----T-GTT--G--C-ATGCG----A-CAG--------GGAAG--------AGGG--GG--GG---------GGGC----A---GA------A-------A----GAAGACA-GCGAGAG-AGGTG-GAAAAGAACC----CAAACA-GAGGACA-CCGATGT-GAA-TTTCAAACT--ATNCAA-ATA-AATTTGATGATTG-ACGTTTATTGCA---ACGTC--GGT-C--AAC-G-T-T-GGCNCAA-G--TGTCAAAT-AGC----TGC-GCATTGGGC----C----NACATTGGA-CCGACATTGTAATTATNA--TGTTGGATCACTTGACGTTGGGCANAATTACATTGGNGCNAACAGTGAGAGTAATATTGTA
Reference ( gi|1 ) : GCAGTTGGCAGAACGGCATTGGGCCAAC----AT---TCGACCGAC-ATTG-CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTA-TCTGACTG-TG--GGATTCAATGTGGACGATTGCTTCCAATGACATC--G-ACCGA-A-TGTTGTAAGTTATCT-ACTG-TGGGAC----TCATTG-ACA-T-GTTTTCAA-AGT-CGGACCGA-CGTTG-GATATTGGGTGTCAAGTCGT-TTGGTTGGAGCTG-ACAAT--CG--GT-CCAATGTATTGGACCGCTA--T-GTT-GAA--C-AATGGTTGGGACATAGATCAT-GTG-ATAT-CGAACTTGTT-G--AT-TCA-AT-ATC--TA-TA-GAGATCT-ACTGCTC-----ACTGTT-GGTACAAACACACAAAACCAGC---------AT----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--TAAGTAAATGACTA--TA-CACAATTAATTTTTAAATCTGTT-CA-ATATTTT-GTGCATCAAGGATGGA----AAGGAACAAATAAATTCAAACTTT-AACAA----TTC-AGTTTACA-ACTTCAACAG-T--------TCAAAGACAATT-TACATGTTAGGCCTTCTCAA-CTTGCCA-CA-TA-ACTTTTCTG-CA-CTCGTGACT-GAAA-GTCATCCCCG-CCAAGAAGAACTGTGATGT-CA-CTGTCGCA-TCACTA------GAT--CTCTCTGTCTGATG-CTTTTT----ATGAGTAGGACT-ATGGATGCCATCAGACCGC---ATAAACTTTATGTAA-GTA--G--G--GCCCT-AT--A-T-AT--CTTTTTTAATTTGATATTC-TC----------ATT--AGGCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGCCTATATAGTTATGTTC---TGGGTATCCA-TTTATT-ATT-GATTATATGAATCGGCC--TTAA---------TAAAT------ATTA--TTTGATA--ATTT-TAT-TTC------TAA---TT-CATTTTGTTTTTCA-GTCCTGGGAGTT-TCGT-AGA-AAAAGA-TAT-TG--CTCGTT---TA-AGACTA-AGCA---AAACAGGATTCCAGA-GTT-----TGATT--G--C-ATGCG----A-CAG--------GGAAG--------AGGG--GG--GG---------GAGC----A---GA------A-------A----GAAGACC-GCGAGAG-AGGTG-GAAAAGAACCATTGCAAACA-GAGGACA-CAGATGT-GAC-TTTCAAACT--ATTCAATCTA-AATTTGATGATTG-ACGTTTATTACA---ACATT--GGT-C--AGC-A-T-T-GGCCCAA-G--TGTCAAAT-AGC----TGT-GCATTGGGC----C----TACATTGGG-CCAACA----AATTAAAAGATGTTGAATAACTTGGCGTTGGACACA--TACATTGGCGCCAACAATAGGAGTATTATTGTAATAACA
gi|4 : GCA-TTGGCAGCATGACATTGGGCC-AC----AT---TGGACCGAC-GTTG-
gi|6 : cagatagcagagcttacaatggcccacgttgggtattggttggtaaatcgagcaacatagtcGCAGTTGGCAGAACGGCATTGGACCAACATATAT---TGGACCGAC-ACTGAATTATCACTGTTGGATCACTGACATTGTTCCAACATCGGACCGACGTTG--TTATTTTAAGTGTTGGTGGATT-------GAC-ATCG-GTCCAATG--TTG--G-ACCGACATTGTTG-AA-----CT-AATGTTGGGACATAATCATTGTACA-T-G-TACCAA-TGT-TGGGTCGA-taattatcactgtgggactcattgacattgtccaacattcggaccgaacgttgtgatgatttcagtgttggtggattgacatcggtgccaatgttggaccgatattgtttgaaccaattgttgggacatagtcattgtccaatgtttgccattcacatattcttataagagttcttactgctcgagcactgttggaacaaacacacagaagtaaaaacacaacattttaaagtatttgatatgatgaacaagtaaatggctatacacaatgatttttaaatctattcatatatttttgcattaaaaatggaatggaacaattaattcctaacttttaactaggcctatagtttacagacttcaagagttaaaaataatttacatttaggcttctcaacttgccaacataacttttctgcactcgtgactgaaagtcatccccgccaagaagaactgtgaattcagctgtcgcattcactagatctctctgtctgatgctttttcttagtagaactatggatgccagcagaccgcaataattatgtaagttggccccaatattgtgttttttaatttgatatctcactaggcttattttaaataatt
gi|7 : gatagcaagcttacattggcccaatgttggtatatggttggtaaatcggctacatattGCAGTTGGCAGAACGGCAGTGGAACAAC----AT---TGGATCGAC-ATTG-tatcttatagatctcactactcgctgttggcacaaacacacagaacccacgttaaagattttaaagtattttgatataataaacaaataaatggctataaacaattaagttttaaatctattcagtattttgtgcatcaaagttggaatttaaagagcaattaaattcaactttgagtttacaatttcaacattttaaaaacgatttacatgttaggccttctctac
gi|10 : ttatattggccctatgttggtatatatgactggtaaatcggctgcagagcGCCGTTGGCAGAACGGCATTGGACCGAC----AT---Ttaattatcactgttggatcattgacattgttccaacaccggaccgatgttcatattttcagtgttggtggattgacatcggtccattattggaccgacattattgaacaaatgttggaaaataatcattgtttcattgttgggtccatatcttatactgctcactgttggcacagacacacaaaaccaacattaaagcggcgagtattttaatataaggaatttaaataaatggctatac
gi|16 : ccagatagcaagcttacattggcccaacgttgacccatggttggtaaatcggcaacttatcGCAGTTG-CAGA-CGGCATTGGACCAAA----ACAAATTGACCTACAATTG-gtaattatcactgtgggatcattgacattgagcaaaattacattggccaaacataattttccaacatcggaccaaggagggagatatgtgatacatactaaaatgaacaatgtgttaaaagtaatcattgtc
gi|11 : gcaagcatcttacagtgtggcccaacgatggtatatggtatggtaatatccaggcaacagtatcGTTGGTGGATTGGCATCGGTCCAAT----GT---TGGACCGAC-ATTG-ttatatcccactggtagtcgtaacatcatccaa
gi|11 : ataatcactgtgggatcattgatattgggccaacattggaccgacattgtaattatcactgtgggatcattgacaatgttccaacatcggaccgacgttgttattttcagtATTGGGCCAAC----AT---TGGACCGAC-ATTG-ttgaaccatcattgtaccaatgttgattcaatatttattagagttctattgctcactgttggcacaaacaca
gi|4 : ataatcactgtgggatcattgatAATTA-TC--ACTG-TG--GGACTCA---TTGAC-ATTG--TCCAA---CATTCGG-ACCGA-A-CGTTGTGA-TGATTTCAGTG-TTGG-T----GGATTG-ACA-TCGGTGCCAA-TGT-TGGACCGA-TATTG---T-TTGA--ACCAA----T-T--GTTGGGAC---ATAGT--CATTGT-CCAATGT-TTGtaattatcactgtgggatcattgacaatgttccaacatcggaccgacgttgttattttcagtgttggtggattggcatcggtccaatgttggaccgacattgttgaaccatcattgtaccaatgttgattcaatatttattagagttctattgctcactgttggcacaaacaca
gi|11 : cagatagcagagcttacaatggcccacgttgggtattggttggtaaatcgagcaacatagtcgcattggcagcatgacattgggccacattggaccgacgttgtACTG-TG--GGAT-CA---TTGAT-ATTGGG-CCAA---CATT--GGACCGA---CATTGTAA-TTATC--ACTG-TGGGA-----TCATTG-ACAAT-GTTC-CAA-CAT-CGGACCGA-CGTTG-T-TATT-----TTCAGT-G--TTGG-TGGA-TTG-GC-AT--CG--GT-CCAATG--TTGGACCGACAT-T-GTT-GAA--C------------C----ATCAT--TG--TAC-CAA---TGTT-G--AT-TCA-AT-ATT--TATTA-GAGTTCT-ATTGCTC-----ACTGTT-GGCACAAACACAccattcacatattcttataagagttcttactgctcgagcactgttggaacaaacacacagaagtaaaaacacaacattttaaagtatttgatatgatgaacaagtaaatggctatacacaatgatttttaaatctattcatatatttttgcattaaaaatggaatggaacaattaattcctaacttttaactaggcctatagtttacagacttcaagagttaaaaataatttacatttaggcttctcaacttgccaacataacttttctgcactcgtgactgaaagtcatccccgccaagaagaactgtgaattcagctgtcgcattcactagatctctctgtctgatgctttttcttagtagaactatggatgccagcagaccgcaataattatgtaagttggccccaatattgtgttttttaatttgatatctcactaggcttattttaaataatt
gi|7 : ataatcAACAACATT--GGATCGA---CATTGTAA-TTATC--ACTG-TTGGA-----TCATTG-ACA-T-TGTTCCAA-CAC-CGGACCGA-TGTTC--ATATT-----TTCAGT-GT-T-GGT-GGA-TTG-ACA-T--CG--GT-CCA-T-TATTGGACCGACA--TTATT-GAA--C-AAATGTTGGAAAATA-ATCAT--TG-TT-T-CA---TTGTT-G--GG-TCC-AT-ATC--T--TA-------T-ACTGCTC-----ACTGTT-GGCACAGACACACAAAACCAAC---------AT----------TA-A--------AGCGG-C---------GAGTA-TTTTAATATA--AGGAATTTAAATAAATGGCTA--TA-C
gi|10 : ttatattggccctatgttggtatatatgactggtaaatcggctgcagagcgcagttggcagaacggcagtggAACGGCATT--GGACCGA---CATTGTAA-TTATC--ACTG-TGGGA-----TCATTG-ACA-T-
gi|2 : ccagatagcaagcttacattggcccaacgttgacccatggttggtaaatcggcaacttatcgccgttggcagACATG--G-ACCCG-A-CATTGTAA-TTATC--AC-G-TGGGA-----TC-TCG-ACA-TTGTTTCCAA-CATACGGACCGA-CGTTG-TTTATT-----TTCAGT-------GTTGGTGATGGACA----CG--GT-CCAATGT--TGGACC--TAATT-GTT-GAATCC-AATG-TTGGGACATAG-TCAT--TG--TAC-CAAA--TGTT-G--ATATCA-ATGAGC--TA-TA-------T--CTGCTCGAGCAACTGTTTGGCACAAACACACAGAGCCAAC---------GTTAAGGAGGTAAATA--------AAC-AACA---TTTTAAAGTAATTTTGATATATAATGAAGCCAAGTAAATGGCTA--TAACACAATTA-TTTTTAAATCTATTTCA-ATATTTTTGTGCATCAAAGATGGA----AAGAAACAATTAAATTCAAACTTT-AACTA----TTCCAGTTTACA-ACTTCA-CAGGT--------TTAAA-ACAATTGTAC--GATAGGCCTTCTCAAACTTGCCA-CAATA-ACTTTTCTGGCA-CTCGTGACT-GAAAAGTCTTCCCCG-CCAAGAAGAACTGTGATGTTCA-CTGTCGCA-TCACTC------GAT--CTCTCTGTCTGATG-CTTTTT----CTTAGTAG-ACT-ATGGATGCCAGCAGACC-CTCAATAA---TTATGTAA-GTA--G--G---CCCT-AT--A-T-ATAATTTTTTTAATTTGATATTCCTCGATTAGCGATATTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTCTCCTGT-TAGTT-TGATCATGCGGGTATCCAATGTA---ATT-T-TTATATTCCTCGGCCCCTTAA---------TAAATTACTGTATTAATTTTGATATGATTTCTACGTTCGCTAGTTAGATCTT-CATTTT-TGTTTCAAGTCCTGGGAGTTCTCGCCAGACAAAAGACTAT-GC--CTCGTT---TA--GTCTACAGCT---A--C-GGATTC-AGATGTTA----TCATC--GGAC-AAGGG----A-AAGTAAAGGGGGGAAGG-------AGGG--GG--GG---------GGGGTAAGA---GA------A-------ACAGAGAAGACA-GCGAGA--AGGTG-GAAA-GAACC----CAA-CA-GAGGACA-CCGATGT-GA--TTTCACACT--AATCAA-ATATAATTTGATGATTGGACGTATTTTGCA----CATTTTGGT-C--AGC-A-T-T-GGCACAATG--T-TCAAGT-AAC----TGG-CCATTGGG-----C----TACATTGGGCCCAAC------ATTAAAA----TTTGATAACTGCGTGTTGGGC-C---TACATTGGGGCCAACAGTGAGAGTAATATTGTAtgagcaaaattacattggccaaacataattttccaacatcggaccaaggagggagatatgtgatacatactaaaatgaacaatgtgttaaaagtaatcattgtc
gi|4 : ccaACATT--GGACCGA---CGTTGTAA-TTATC--ACTG-TGGGAC----TCATTG-ACA-T--TGTCCAACATT-CGGACCGAACGTTGTGAT----GATTTCA----GTGTTGGT-GGA-TTG-ACA-T--CG--GTGCCAATGT--TGGACCGATA--TTGTTTGAA--CCAATTGTTGGGACATAG-TCAT------TGT-CCAA--TGTTTGCCAT-TCACAT-ATTCTTA-TAAGAGTTCTTACTGCTCGAGC-ACTGTT-GGAACAAACACACAGAA--------------GT----------AA-A--------AAC-A-CAACATTTTAAAGTA-TTT-GATATG--ATGAA--CAAGTAAATGGCTA--TA-CACAAT-GATTTTTAAATCTATT-CATATATTTT--TGCATTAAAAATGGA----ATGGAACAATTAATTCCTAACTTTTAACTAGGCCTAT-AGTTTACAGACTTCAAGAG-T--------T-AAAAATAATT-TACAT-TTAGGC-TTCTCAA-CTTGCCAACA-TA-ACTTTTCTG-CA-CTCGTGACT-GAAA-GTCATCCCCG-CCAAGAAGAACTGTGAATT-CAGCTGTCGCATTCACTA------GAT--CTCTCTGTCTGATG-CTTTTT----CTTAGTAGAACT-ATGGATGCCAGCAGACCGCA--ATAA---TTATGTAA-GTT--G--G--CCCCA-AT--ATT-GT--GTTTTTTAATTTGATA-TC-TC----------ACT--AGGCggcaca
gi|6 : cagatagcagagcttacaatggcccacgttgggtattggttggtaaatcgagcaacatagtcgcattggcagcatgacattgggcc--G-ACCGA---CACTG--AATTATC--ACTG-TTGGA-----TCACTG-ACA-T-TGTTCCAA-CAT-CGGACCGA-CGTTG-T-TATT-----TTAAGT-GT-T-GGT-GGA-TTG-ACA-T--CG--GT-CCAATGT--TGGACCGACA--TTGTT-GAA--CTAATG-TTGGGACATA-ATCATTGTACATGTACCAA--TGTT-G--GG-TCG-AT-ATC--T--TA-TAGATCTCACTACTC-----GCTGTT-GGCACAAACACACAGAACCCAC---------GT----------TA-A--------AG-----A---TTTTAAAGTA-TTTTGATATA--ATAAA--CAAATAAATGGCTA--TA-AACAATTAAGTTTTAAATCTATT-CA-GTATTTT-GTGCATCAAAGTTGGAATTTAAAGAGCAATTAAATTC-AACTTT-G------------AGTTTACA-ATTTCAACAT-T--------TTAAAAACGATT-TACATGTTAGGCCTTCTCTA-Cttattttaaataatt
gi|14 : gatagcaagcttacattggcccaatgttggtatatggttggtaaatcggctacatattgcagttggcagaacggcattggaccaacatatattgCCGA---CGTTG--AATTATC--ACTG-TGGG------TCATTG-ACA-T--TGTTCAA-
gi|22 : ccagatagcaagcttacattggccaacgttggttatgtgggtaattccccggcccatcatattcgggcagtttggcaaaaagacggcaatgggcgcgagactattgggtAATTATC--ACTG-TGGG------TCATTG-ACA-T--TGTTCAA-cc
gi|6 : -ACAATGTCG--GT-CCAAC--ATTGGACCG--A--T-GT
gi|17 : gatagcaagcttacattggcccaatgttggtatatggttggtaaatcggctacatattgcagttggcagaacggcattggaccaacatatattggaccgacactgaattatcactgttggatcactgacattgttccaacatcggaccgacgttgttattttaagtgttggtggattgAGTTCT-ACTGCTC-----ACTGTT-GGCACAA--ACACAGAACCAACGTTGAAGAGAT----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGtgaactaatgttgggacataatcattgtacatgtaccaatgttgggtcgatatcttatagatctcactactcgctgttggcacaaacacacagaacccacgttaaagattttaaagtattttgatataataaacaaataaatggctataaacaattaagttttaaatctattcagtattttgtgcatcaaagttggaatttaaagagcaattaaattcaactttgagtttacaatttcaacattttaaaaacgatttacatgttaggccttctctac
gi|3 : gtcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnC-----AATGTT-GGTACAAACACACAAAACCAAG---------TT----------AA-AGAGGTGGAAAC-A-TA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAATAAAGGACTAGATA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAAGAATAATTAAACTCAAACTTT-AACTA----CTG-GGTTTACA-ATTACAGCAA-TATGAAAAATTAAA-ACAATT-TACATGGCAGGCCTTCTCAA-CTTGCCT-CT-TA-ACTTCTCTG-CA-CTCGTGACT-GAAA-GTCATCCTCG-CCAAAAAGAACTGTGATGT-CA-CTGTCGCA-TCACTA------GAT--CTCTCTGTCTGATG-ATTATT----CTGAGTAGGCCT-ATTGACACCAGCAGA---C---ATAA---TTATGTAA-ATA------------T-AT--A-TGA------TTTTGGTTTGATATTC-TC----------ATT--
gi|9 : TTAGGCCTTCTCAA-CTTGCCA-CA-TACACTTTTCTG-CAACTCGTG-CT-GAAA-GTC-TTCCCG-CCAAGAAGAACTGTGATGT-CA-CTGTCGCA-TCACTA------G-T--CTCTCTGTCTGATG-CTTTTT----CTTAGTAGGACT-ATGGATGCCAGCAGACCGC---ATAA---TTATGTAA-GTA--G--GAAGCCGC-CT--A-T-AT--TTTTTTTTATTTGATA-TC-TCT---------ATT--AGGCCtttctaaaattaatataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcttatttattttgtttatatcatccgcccttgataaatttatttgataatttattgtaataattttgttttcagaaggagtttgcagaaaaaaagactatactcgctacggattccgagttgttgcatcggacagggaagaaggaggggggtaagagaacagaagaagacagcgagagaaagtggaagagaatcaaacagaggacaccgatgtggaatttcaaacaccatgaatacaata
gi|13 : tCA-CA-TA-AGTTT-CTG-CA-CTC-TGACTTGAAA-GTCATCCCCGACCAACAG--ACTGTGATGT-CC-CTGTCGCA-TCACTACTATAGGATAGCT-TCT-TTTGA-G-CTTTTT----CTTAGTAG-------------CAGCAGAC--------AAA--TTAT-TAAGGTATTGATG--ATTGT--T--A-T-AT--ATTTTTTAATTTGATAATC-TC----------ATT--tatttaaggggatgattaatagtacgtcacgt
gi|15 : TTTTCTG-CA-CTCGTGACT-GAAA-GTCATCCC--------------TGTGATGT-CA-TTG--------------------T--CTCTCTGTCTAATATTTTTTT----CTGAGTAGGCCTAATGGATGCGAGCAGA--G----ATAA--TTT-TGTAA-GTA--T--T--G-----A------------TTTTTAAATTTGATATTC-TC----------ATC--Atttaattaaaat
gi|5 : TCTG-CA-CTTTTAACT-GAAA-GTCATTCTCA-CTCAAAAGAACTGTGATGT-CA-CTGCCACA-TCACTA------CAT--ATCTCTGTCTGATG-TTTTTTTCTTCTAAGTATACCT-ATGG---CTACAAGA-------AGAAG---TATGTAA-GTA--T--T--GAATTGATGCA-T-AT--ATTTTT--ATTTGATAATT-AC----------ATC--AGttctaaaattaa
gi|8 : GGGTATCCT-CGTATA-ATT-GGTTATATC--TCGCCC--TTAA---------TAAAT------ATT---TTTGATA--ATTT--AT-TT--------AA---TGACATTT-GTTTG-CA-GTC-TGGGAGTT-GCGC-AGA-AAAAGACTAT--G--CTCGTT---T--AGACT--AGC-----TAC-GGAT--CAGA-GTT-------A-T--G--C-AT-CG----AGCAG--------GGAAGAAGGGGGAAGGG--GG--GGGGGTAAGAAGAGC----A---G-------A-------A----GAAGACTAGCGAGAG-AGGTG-GAAAAGAACCA----AAGCAGGAGGACA-CCGATGT-GAA-TTC--AACTAAATACAA--AA-AATTTGATGATTG-ATGTTT-TTGCAACCACATTA-GGT-CCAGGC-A-T-TCGGCACAA----TGTctaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatacatcgggcatccatttatttattcgtttttatcatccgtctttaaggtttttattaactatcattttattatttattgtcatcaatttgtttcagatggattttgcagaaattgactatatgatcattagctacggacttagatgtatgtaatattagttaatagtggtttcgctatgcatcgaacagggaaaacggttggctggggcagaaggataagagaagacagcgagagaaatggaagagaaccaaacagaagaaaccgaggattaacactt
gi|5 : tatcGGGCATCCA-TTTATTTATTCGTTTTTATCATCCGTCT--TTAAGGTTTTTATTAACT------ATCA--TTTTATT--ATTT--AT-TGT------CA-----T-CAATTTGTTT--CA-G--ATGGA--TT-TTGC-AGA-AATTGACTATATG--ATCATTAGCTACGGACTT-AG-ATGTATGTAATATT----A-GTTAATAGTGGTTTCG--CTATGCATCGAA-CAG--------GGAAA--------ACGGTTGGCTGG---------G-GC----A---GA------AGGATAAGA----GAAGACA-GCGAGAG-AAATG-GAAGAGAAC-----CAAACA-GAAGAAA-CCGAt
gi|3 : tctgcacttttaactgaaagtcattctcactcaaaagaactgtgatgtcactgccacatcactacatatctctgtctgatgtttttttcttctaagtatacctatggctacaagaagaagtatgtaagtattgaattgatgcatatatttttatttgataattacatcagctaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatacatcA-TTTATT--TT-GTTTATATCATCCGCCC--TTGA---------TAAAT-------TTA--TTTGATA--ATTT--AT-TG-------TAA---T--AATTTTGTTTT-CA-GA---AGGAGTT-T-GC-AGA-AAAAAA-GAC-TATACTCGCT----------------------AC-GGATTCC-GA-GTT-------GTT--G--C-ATCGG----A-CAG--------GGAAG--------AAGG--AG--GG---------GGGTA---A---GAGAACAGA-------A----GAAGACA-GCGAGAGAAAGTG-GAAGAGAAT-----CAAACA-GAGGACA-CCGATGTGGAA-TTTCAAACggattaacactt
gi|12 : caatgttggtacaaacacacaaaaccaagttaaagaggtggaaacatattttaaagtattttgatataatgaacaaataaaggactagatacacaattaatttttaaatctattcaatattttgtgcatcaaagatggaaaagaataattaaactcaaactttaactactgggtttacaattacagcaatatgaaaaattaaaacaatttacatggcaggccttctcaacttgcctcttaacttctctgcactcgtgactgaaagtcatcctcgccaaaaagaactgtgatgtcactgtcgcatcactagatctctctgtctgatgattattctgagtaggcctattgacaccagcagacataattatgtaaatatatatgattttggtttgatattctcatttttctaaaattaatataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcttT--G--C-A--CG----A-CAG--------GAAGG--------GGGG--GG--GG---------GAGT----AAGAGA------ACAGA---A----GAAGACA-GCGAGAG-AGGTGCGAAAA--AC----G-AAACA-GAGGACAACCGATGT-GAAATTTCAAACT--ATCAAAGATA-AATTTGATGATT--ACGTTT-CTGCA---ACATT--GGTCC--AACGA-T-T-GGCACAATG--TTTC-AAT-A-C----TG--GCATTGGAC----C----AATATTG-------------------AAAATGTTGAATaccatgaatacaata
gi|4 : taATTACA---ACGTC--GGT-C----C-AATGT-GGCCCAA----TGTC--AT--GC----TGC--CAATGCGA----C----TATGTTG
gi|11 : cagatagcagagcttacaatggcccacgttgggtattggttggtaaatcgagATTACA---ATGTC--GGTCC--AAT-G-T-T-GGCCCAA----TATCAAtatcactgtgggactcattgacattgtccaacattcggaccgaacgttgtgatgatttcagtgttggtggattgacatcggtgccaatgttggaccgatattgtttgaaccaattgttgggacatagtcattgtccaatgtttgccattcacatattcttataagagttcttactgctcgagcactgttggaacaaacacacagaagtaaaaacacaacattttaaagtatttgatatgatgaacaagtaaatggctatacacaatgatttttaaatctattcatatatttttgcattaaaaatggaatggaacaattaattcctaacttttaactaggcctatagtttacagacttcaagagttaaaaataatttacatttaggcttctcaacttgccaacataacttttctgcactcgtgactgaaagtcatccccgccaagaagaactgtgaattcagctgtcgcattcactagatctctctgtctgatgctttttcttagtagaactatggatgccagcagaccgcaataattatgtaagttggccccaatattgtgttttttaatttgatatctcactaggcttattttaaataatt
gi|10 : ataatcactgtgggatca---ACATT--GGC-CC-AAC-G-T-T-GACCCAT-GGTTGGTAAATCGGCAACTTATCGCCGTTGGCAGAAC----GGCATTGGA-CCGACATTGTAATTATCAC-TGTGGGATCA-TTGACATTGAGCAAAATTACATTGGC-CAAACAtatcactgtgggatcattgacaatgttccaacatcggaccgacgttgttattttcagtgttggtggattggcatcggtccaatgttggaccgacattgttgaaccatcattgtaccaatgttgattcaatatttattagagttctattgctcactgttggcacaaacaca
gi|6 : ccagatagcaagctt-GCATTGGAC----CAACATATATTGGA-CCGACACTG-AATTATCA-CTGTTGGATCAC-TGACATTGtaattttccaacatcggaccaaggagggagatatgtgatacatactaaaatgaacaatgtgttaaaagtaatcattgtc
gi|11 : gatagcaagcttacattggcccaatgttggtatatggttggtaaatcggctacatattgcagttggcagaacgATTGGGC----C----AACATTGGA-CCGACATTGTAATTAttccaacatcggaccgacgttgttattttaagtgttggtggattgacatcggtccaatgttggaccgacattgttgaactaatgttgggacataatcattgtacatgtaccaatgttgggtcgatatcttatagatctcactactcgctgttggcacaaacacacagaacccacgttaaagattttaaagtattttgatataataaacaaataaatggctataaacaattaagttttaaatctattcagtattttgtgcatcaaagttggaatttaaagagcaattaaattcaactttgagtttacaatttcaacattttaaaaacgatttacatgttaggccttctctac
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): TCCCAGGTAGCAAGGGCACATTGGCCCAATGTTGGTTGTTTGGTTG
Unaligned ( gi|19 ): GATAACAAGCTTACATTAGCCCAATGTTGGGCCACTGTT
Unaligned ( gi|20 ): CCAGATAGCAATCTTACATTGGCCCAACGTTGG
Unaligned ( gi|21 ): TACTTAAGGGGATGATTAATAGTACGTCACGT
Unaligned ( gi|23 ): TTAAGGGGATGATTAATAGTACGTCACGT
Alignments
lowQualScore : 1 3333 444444444444 1 1 1 11 2222 2222 1 11111111111111 4 1 333 1 11 11 1 222 1 11111111 22 2222 22222 11 333333333 111111 22222 44444444444444444444444444444444 11111111 11 1111 1111 22222222 111111 3333333 4444444444444 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888 2 2 222 1111 333333333 222222 111 11 11 111 444444444444444 22 11 111 44444444444444444444 11 22222 333333333333333333333 22222222 2222222222 999999999999999999999999999 111111 11 22222 11 1 1 3333333333333333333333333333 111111 11111 6666666666666666666666666666 11111 11
lowQualScore : 3 6 0000 1 555555555555 5 3 3 99 1111 0000 3 5 5 44444444444444 0 6 5 555 0 6 99 0 77 1 6 6 0 6 6 3 6 000 3 3 6 888 66666666 1 6 6 22 6 6 6 0000 3 6 99 33333 88 5 5 444444444 77 5 99999 5 888888 5 2 5 5 33333 5 55555555555555555555555555555555 11111111 5 99 88 99 6 0 0 8 8 8 7777 6 0 8 1 7777 99 8 0 99999999 3 0 8 0 6 6 6 6 5 5 5 5 0 5 0 5 5 5 444444 0 66 5 5 888 33 5 3333333 0 888 5 1111111111111 3 5 777 0 9 5 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333 3 0 0 4 111 8 1 0000 999 8 66 8 222222222 333333 0 111 11 8 11 444 111111111111111 8 0 88 66 8 3 8 11 8 444 99999999999999999999 8 8 44 0 00000 8 555555555555555555555 6 44444444 6 4444444444 99 555555555555555555555555555 6 6 6 777777 6 6 8 88 33 1 11111 22 5 6 4 2 6 8 88 1 8888888888888888888888888888 777777 1 99 2 44444 3 8888888888888888888888888888 44 2 88888 66 1 4
lowQualScore : . . .... . ............ . . . .. .... .... . . . .............. . . . ... . . .. . .. . . . . . . . . ... . . . ... ........ . . . .. . . . .... . . .. ..... .. . . ......... .. . ..... . ...... . . . . ..... . ................................ ........ . .. .. .. . . . . . . .... . . . . .... .. . . ........ . . . . . . . . . . . . . . . . . . ...... . .. . . ... .. . ....... . ... . ............. . . ... . . . . ................................................................................ . . . . ... . . .... ... . .. . ......... ...... . ... .. . .. ... ............... . . .. .. . . . .. . ... .................... . . .. . ..... . ..................... . ........ . .......... .. ........................... . . . ...... . . . .. .. . ..... .. . . . . . . .. . ............................ ...... . .. . ..... . ............................ .. . ..... .. . .
lowQualScore : 3 7 7777 0 777777777777 0 3 3 22 2222 8888 2 8 2 00000000000000 0 0 5 000 0 0 55 8 22 7 7 7 7 7 7 3 7 555 3 3 7 333 88888888 0 7 7 88 7 7 7 5555 7 7 22 22222 22 7 7 111111111 99 7 66666 7 000000 7 4 7 7 11111 0 77777777777777777777777777777777 99999999 7 22 33 22 7 8 8 0 0 0 0000 0 8 0 0 0000 00 0 8 00000000 8 8 0 8 7 7 7 7 0 0 0 0 4 0 2 0 0 0 444444 1 99 0 0 888 00 0 1111111 1 888 0 2222222222222 9 0 999 4 8 0 0 22222222222222222222222222222222222222222222222222222222222222222222222222222222 0 0 0 0 333 0 0 6666 000 0 66 0 000000000 000000 8 888 00 0 00 000 222222222222222 0 8 88 66 0 2 0 00 0 444 00000000000000000000 0 0 22 8 00000 0 555555555555555555555 7 22222222 7 3333333333 22 222222222222222222222222222 7 7 7 777777 7 7 0 88 88 0 22222 55 8 7 6 8 0 0 88 0 8888888888888888888888888888 777777 0 88 0 00000 2 2222222222222222222222222222 88 5 55555 00 0 0
consensus : GCAGTT-GGCAGAA---CGGCATTGGGC-C--GA---C--ATT-GA-CCGAC-GTTGA-TTAT----CACTGTTGGGTCGTTGACATCGTTCCAACNNNNNNNNNNNNNNGAATTAT-CTGACTGTGGGATTCAATGTTGAC-ATTGGG-CCAACG-ACATTGGACC-GA-CGTTGTAA-TTATC-ACTGTGGGA-TCATTGAC-AT-GTTTCCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTCAGT-GTT-GGTTGGA-TTGACA-TCGGT-CCAATGT-TTGGACCGACATTGTT-GAA--C-AAT-GTTGGGACATAGATCAT-TG-T----AT-CNAA--TGTT-G--AT-TCA-ATATC--T-A-TA-GAGTTCT-A-CTGCTC-----ACTGTT-GGCACAAACACACAGAACCAACG---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAGTAAATGGCTA--TA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAGGAACAATTAAATTCAAACTTT-AACTA----TT-NAGTTTACA-ACTTCAACAGT--------TTAAAAACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGGACTA-TGGATGCCAGCAGACCGC---ATAA---TTATGTAA-GTA--G--G--GCC-NTATA-TAT--NTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTCNCCTGTATAGTTATGNTCAT-CGGGTATCC-ATTTATT-ATT-GTTTATA-TCATCCG-CCCTTAA---------TAAA------TATTA--TTTGATA--A-TT--TA---TTGCTAA-------TT-CA-TTTTG-TTTTCAGTCCTGGGAGTT-TCG-CAG--A-AAAAGACTAT-TGCTCGTT---TA-GGAC-TA-AG-C--TAC-G-GATTCCAG-----A-GTTAT-G-TCG--C-ATGC----GA-CA--------GGGAA-G--------A-GG--GGGGGGGG----T-A---GA-------A--A----AGAAGAC-AGCGAGAG-AGGTG-GAAAAGAACC----CAAACA-GAGGAC-ACCGATGT-G-AATTTCAAACT--ATTCAA-ATA-AATTTGATGATT-GACGTTTATTGCA-ACGTTGGTCC-AACG-TTGGCCCAA-G--TG-TCAAAT----AGCT----GCGCATTGGGC----CTACATTGGG-CCAACGTT-GTAATT--ATGA-TGTTGG---ATN----AC---TTGGCGTTGGGCANAACTACATTGGNGCCAACAGTGGGAGTANTATTGTA
Reference ( family-744 ) : GCAGTT-GGCAGAA---CGGCATTGGAC-C--AA---C--ATTGGA-CCGAC-ATTGA-TTAT----CACTGTTGGATCACTGACATTGTTCCAACATCGGACCGACGTTGAATTATTCTAACTGTGGGATTCA---TTGAC-ATCGGT-CCAACG-ACATTGGACC-GA-CGTTGTAA-TTATC-ACTGTGGGA-TCATTGAC-AT-GTTTCCAACGT-CGGACCGA-CGTTGT-T-AT--T-----TTNAGT-GTT-GGTTGGA-TTGACA-TCGGT-CCAATGT-TTGGACCGACATTGTT-GAA--C-AATNGTTGGGACATAGATCAT-TG-T----GT-CAAA--TGTT-G--AT-TCA-ATATC--T-A-TA-GAGTTCT-A-CTGCTC-----ACTGTT-GGCACAAACACACAGAACCAACG---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAATAAATGGCTA--TA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAGGAACAATTAAATTCAAACTTT-AACTA----TT-NAGTTTACA-ACTTCAACAGT--------TTAAAAACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGGNCTA-TGGATGCCAGCAGACCGC---ATAA---TTATGTAA-GTA--G--G--GCC-NTATA-TAT--NTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTCTCCTGT-TAGTT-TGATCATGCGGGTATCC-ATNTATT-ATT-GTTTATA-TCATCCG-CCCTTAA---------TAAA------TATTA--TTTGATA--A-TT--TA---TTNCTAA-------TT-CA-TTTTG-TTTTCAGT-CTGGGAGTT-TCG-CAG--A-AAAAGACTAT-TGCTCGTT---TA-GGAC-T--AG-C-ATAC-G-GATTCCAG-----A-GTTAT-G-TTG--C-ATGC----GA-CA--------GGGAA-G--------A-GG--GGGGGGGG----C-A---GA-------A-------AGAAGAC-AGCGAGAG-AGGTG-GAAAAGAACC----CAAACA-GAGGAC-ACCGATGT-G-AATTTCAAACT--ATNCAA-ATA-AATTTGATGATT-GACGTTTATTGCA-ACGTCGGT-C-AACG-TTGGCNCAA-G--TG-TCAAAT----AGCT----GCGCATTGGGC----CNACATTGGA-CCGACATT-GTAATT--ATNA-TGTTGG---ATC----AC---TTGACGTTGGGCANAATTACATTGGNGCNAACAGTGAGAGTAATATTGTA
gi|1 : GCAGTT-GGCAGAA---CGGCATTGGGC-C--AA---C--ATTCGA-CCGAC-ATTGC-NNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTAT-CTGACTGTGGGATTCAATGTGGACGATTGCTTCCAATG-ACATCG-ACC-GAATGTTGTAAGTTATCTACTGTGGGACTCATTGAC-AT-GTTTTCAAAGT-CGGACCGA-CGTTGGAT-AT--TGGGTGTCAAGTCGTTTGGTTGGAGCTGACAATCGGT-CCAATGTATTGGACCGCTAT-GTT-GAA--C-AATGGTTGGGACATAGATCATGTGAT----AT-CGAACTTGTT-G--AT-TCA-ATATC--T-A-TA-GAGATCT-A-CTGCTC-----ACTGTT-GGTACAAACACACAAAACCAGCA---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--TAAGTAAATGACTA--TA-CACAATTAATTTTTAAATCTGTT-CA-ATATTTT-GTGCATCAAGGATGGA----AAGGAACAAATAAATTCAAACTTT-AACAA----TT-CAGTTTACA-ACTTCAACAGT--------TCAAAGACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTT-ATG---AGTAGGACTA-TGGATGCCATCAGACCGC---ATAAACTTTATGTAA-GTA--G--G--GCC-CTATA-TAT--CTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGCCTATATAGTTATGTTC---TGGGTATCC-ATTTATT-ATT-GATTATA-TGAATCG-GCCTTAA---------TAAA------TATTA--TTTGATA--ATTT--TA---TTTCTAA-------TT-CA-TTTTGTTTTTCAGTCCTGGGAGTT-TCG-TAG--A-AAAAGA-TAT-TGCTCGTT---TA-AGAC-TA-AG-CAAAACAG-GATTCCAG-----A-GTT-T-GATTG--C-ATGC----GA-CA--------GGGAA-G--------A-GG--GGGGGGAG----C-A---GA-------A-------AGAAGAC-CGCGAGAG-AGGTG-GAAAAGAACCATTGCAAACA-GAGGAC-ACAGATGT-G-ACTTTCAAACT--ATTCAATCTA-AATTTGATGATT-GACGTTTATTACA-ACATTGGT-C-AGCA-TTGGCCCAA-G--TG-TCAAAT----AGCT----GTGCATTGGGC----CTACATTGGG-CCAACA-----AATTAAAAGA-TGTTGA---ATA----AC---TTGGCGTTGGACACA--TACATTGGCGCCAACAATAGGAGTATTATTGTA
gi|10 : -ACATTGGC-CCAACG-TTGACCCAT-GGTTG-GTAAATCGGCAACTTATCGC-CGTTGG-CAGAACGGCATTGGA-CCGACATT-GTAATT--ATCACTGTGGG---ATC----A----TTGACATTGAGCAAAATTACATTGGC-CAAACAataaca
gi|11 : ccagatagcaagcttACTGTGGGAT-CA---TTGAT-ATTGGG-CCAAC----ATTGGACC-GA-CATTGTAA-TTATC-ACTGTGGGA-TCATTGACAAT-G-TTCCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTCAGT-GTT-GG-TGGA-TTGGCA-TCGGT-CCAATG--TTGGACCGACATTGTT-GAA--C------------C----ATCAT-TG-T----AC-C-AA--TGTT-G--AT-TCA-ATATT--T-ATTA-GAGTTCT-A-TTGCTC-----ACTGTT-GGCACAAACACAtaattttccaacatcggaccaaggagggagatatgtgatacatactaaaatgaacaatgtgttaaaagtaatcattgtc
gi|12 : ataatcTG--C-A--C----GA-CA--------GGAAG-G--------G-GG--GGGGGGAG----T-AAGAGA-------ACAGA---AGAAGAC-AGCGAGAG-AGGTGCGAAAAA---C----GAAACA-GAGGACAACCGATGT-GAAATTTCAAACT--ATCAAAGATA-AATTTGATGATT--ACGTTT-CTGCA-ACATTGGTCC-AACGATTGGCACAATG--TT-TC-AAT----A-CT----G-GCATTGGAC----CAATATTGAA-
gi|13 : taCA-C-ATA-AGTTT-CT-GCA-CTC-TGACTTG-AAAGTCATCCCCGACCAACAG--ACTGTGATG-TCC-CTGTCGCAT-CACTACTATAGGATAGCT-TCT-TTTGA-G-CTTTTT-CTT---AGTAG-------------CAGCAGA---C---A-AA---TTAT-TAAGGTATTGATG--ATT-GT-TA-TAT--ATTTTTTAATTTGATAAT-CTC-ATTaatgttgaat
gi|14 : GCAGTTTGGCAAAAAGACGGCAATGGGCGC--GAGACT--ATTGGGTCCGAC-GTTGAATTAT----CACTGT-GGGTCATTGACATTGTT-CAACtttaattaaaat
gi|15 : ccagatagcaagcttacattggccaacgttggttatgtgggtaattccccggcccatcatattcggTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCC--------------TGTGATG-TCA-TTGTC----------------------TCTCTGTCTAATA-TTTTTTTCTG---AGTAGGCCTAATGGATGCGAGCAGA--G----ATAA---TTTTGTAA-GTA------------TTG--------ATTTTTAAATTTGATATT-CTC-ATCAc
gi|16 : GCAGTT-G-CAGA----CGGCATTGGAC-CAAAA---CAAATT-GA-CCTACAATTG--TTATATCCCACTGGTAG-TCG-TAACATCA-TCCAAttctaaaattaa
gi|17 : gcaagcatcttacagtgtggcccaacgatggtatatggtatggtaatatccaggcaacagtatcTCAT-NN-N----NN-NNNN--NNNN-N--NN-NNN-NNNNN--N-N-NN-NAGTTCT-A-CTGCTC-----ACTGTT-GGCACAA--ACACAGAACCAACGTTGAAGAGAT----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTG
gi|2 : gCA-ACAT-GGACCCGA-CATTGTAA-TTATC-AC-GTGGGA-TC-TCGAC-ATTGTTTCCAACATACGGACCGA-CGTTGT-TTAT--T-----TTCAGT-GTT-GGT--GA-TGGACA--CGGT-CCAATGT-T-GGACCTA-ATTGTT-GAATCC-AAT-GTTGGGACATAG-TCAT-TG-T----AC-CAAA--TGTT-G--ATATCA-AT------------GAGCTAT-ATCTGCTCGAGCAACTGTTTGGCACAAACACACAGAGCCAACG---------TTAAGGAGGTAAATA--------AAC-AACA---TTTTAAAGTAATTTTGATATATAATGAAGCCAAGTAAATGGCTA--TAACACAATTA-TTTTTAAATCTATTTCA-ATATTTTTGTGCATCAAAGATGGA----AAGAAACAATTAAATTCAAACTTT-AACTA----TTCCAGTTTACA-ACTTC-ACAGG--------TTTAAAACAATTGTAC--GATAGGCCTTCTCAAACTTGCCA-CAATA-ACTTTTCTGGCA-CTCGTGACT-GAAAAGTCTTCCCCG-CCAAGAAGAACTGTGATGTTCA-CTGTCGCAT-CACTC------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTA-GACTA-TGGATGCCAGCAGACC-CTCAATAA---TTATGTAA-GTA-----G--GCC-CTATA-TATAATTTTTTTAATTTGATATTCCTCGATTAGCGATATTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTCTCCTGT-TAGTT-TGATCATGCGGGTATCCAATGTA---ATT--TTTATATTCCTCGGCCCCTTAA---------TAAATTACTGTATTAATTTTGATATGA-TTTCTACGTTCGCTAGTTAGATCTT-CATTTTTG-TTTCAAGTCCTGGGAGTTCTCGCCAG--ACAAAAGACTAT-GCCTCGTT---TA-GT-C-TACAG-C--TAC-G-GATT-CAG-----ATGTTATCA-TCGGAC-AAGG----GA-AAGTAAAGGGGGGAAGG--------A-GG--GGGGGGGGGTAAG-A---GA-------AACAG---AGAAGAC-AGCGAGA--AGGTG-G-AAAGAACC----C-AACA-GAGGAC-ACCGATGT-G--ATTTCACACT--AATCAA-ATATAATTTGATGATTGGACGTATTTTGCACATTTTGGT-C-AGCA-TTGGCACAA----TGTTCAAGT----AACT----GGCCATTGGG-----CTACATTGGGCCCAACATT-AAAATT---T--------G---ATA----AC---TGCGTGTTGGGC----CTACATTGGGGCCAACAGTGAGAGTAATATTGTA
gi|22 : cA-TTAT----CACTGT-GGGTCATTGACATTGTTCggcaca
gi|3 : aC-----AATGTT-GGTACAAACACACAAAACCAAGT---------T----------AA-AGAGGTGGAAAC-A-TA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAATAAAGGACTAGATA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAAGAATAATTAAACTCAAACTTT-AACTA----CT-GGGTTTACA-ATTACAGCAATATGAAAAATTAAAA-CAATT-TACATGGCAGGCCTTCTC-AACTTGCCT-C-TTA-ACTTCTCT-GCA-CTCGTGACT-G-AAAGTCATCCTCG-CCAAAAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-ATTATT-CTG---AGTAGGCCTA-TTGACACCAGCAGA---C---ATAA---TTATGTAA----------------ATATA-TAT--G-ATTTTGGTTTGATATT-CTC-ATTaa
gi|3 : -ATTTATT--TT-GTTTATA-TCATCCG-CCCTTGA---------TAAA------T-TTA--TTTGATA--A-TT--TA---TTG-TAA--------T-AA-TTTTG-TTTTCAG---AAGGAGTT-T-G-CAGAAA-AAAAGACTAT-----------------AC-T--CG-C--TAC-G-GATTCC-G-----A-GT--T-G-TTG--C-ATCG----GA-CA--------GGGAA-G--------A-AG--GAGGGGGG----TAA---GAGAACAG-A-------AGAAGAC-AGCGAGAGAAAGTG-GAAGAGAA-T----CAAACA-GAGGAC-ACCGATGTGG-AATTTCAAACtttctaaaattaatataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcttatttattttgtttatatcatccgcccttgataaatttatttgataatttattgtaataattttgttttcagaaggagtttgcagaaaaaaagactatactcgctacggattccgagttgttgcatcggacagggaagaaggaggggggtaagagaacagaagaagacagcgagagaaagtggaagagaatcaaacagaggacaccgatgtggaatttcaaacaccatgaatacaata
gi|4 : caatgttggtacaaacacacaaaaccaagttaaagaggtggaaacatattttaaagtattttgatataatgaacaaataaaggactagatacacaattaatttttaaatctattcaatattttgtgcatcaaagatggaaaagaataattaaactcaaactttaactactgggtttacaattacagcaatatgaaaaattaaaacaatttacatggcaggccttctcaacttgcctcttaacttctctgcactcgtgactgaaagtcatcctcgccaaaaagaactgtgatgtcactgtcgcatcactagatctctctgtctgatgattattctgagtaggcctattgacaccagcagacataattatgtaaatatatatgattttggtttgatattctcatttttctaaaattaatataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcttATTACA-ACGTCGGTCC-AATG--TGGCCCAA----TG-TC--AT-----GCT----GC-CAATGCGA----CTATGTTGaccatgaatacaata
gi|4 : cagatagcagagcttacaatggcccacgttgggtattggttggtaaatcgagTGAC-ATTGGG-CCA-----CATTGGACC-GA-CGTTGTAA-TTATC-ACTGTGGGACTCATTGAC-AT--TGTCCAACATTCGGACCGAACGTTGT-G-ATGAT-----TTCAGT-GTT-GGT-GGA-TTGACA-TCGGTGCCAATGT-T-GGACCGATATTGTTTGAA--CCAATTGTTGGGACATAG-TCAT-TG-T-------CCAA--TGTTTGCCAT-TCACATATTCTT-A-TAAGAGTTCTTA-CTGCTCGAGC-ACTGTT-GGAACAAACACACAGAA-----G---------T----------AA-A--------AAC-A-CAACATTTTAAAGTA-TTT-GATATG--ATGAA--CAAGTAAATGGCTA--TA-CACAAT-GATTTTTAAATCTATT-CATATATTTT--TGCATTAAAAATGGA----ATGGAACAATTAATTCCTAACTTTTAACTAGGCCTA-TAGTTTACAGACTTCAAGAGT--------T-AAAAATAATT-TACAT-TTAGGC-TTCTC-AACTTGCCAAC-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGAAT-TCAGCTGTCGCATTCACTA------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGAACTA-TGGATGCCAGCAGACCGCA--ATAA---TTATGTAA-GTT--G--G--CCC-CAATATTGT--GTTTTTTAATTTGATA-T-CTC-ACTAG-----------GCtatcactgtgggactcattgacattgtccaacattcggaccgaacgttgtgatgatttcagtgttggtggattgacatcggtgccaatgttggaccgatattgtttgaaccaattgttgggacatagtcattgtccaatgtttgccattcacatattcttataagagttcttactgctcgagcactgttggaacaaacacacagaagtaaaaacacaacattttaaagtatttgatatgatgaacaagtaaatggctatacacaatgatttttaaatctattcatatatttttgcattaaaaatggaatggaacaattaattcctaacttttaactaggcctatagtttacagacttcaagagttaaaaataatttacatttaggcttctcaacttgccaacataacttttctgcactcgtgactgaaagtcatccccgccaagaagaactgtgaattcagctgtcgcattcactagatctctctgtctgatgctttttcttagtagaactatggatgccagcagaccgcaataattatgtaagttggccccaatattgtgttttttaatttgatatctcactaggcttattttaaataatt
gi|5 : cagatagcagagcttacaatggcccacgttgggtattggttggtaaatcgagcaacatagtcgcattggcagcaTCT-GCA-CTTTTAACT-G-AAAGTCATTCTCA-CTCAAAAGAACTGTGATG-TCA-CTGCCACAT-CACTA------CAT--ATCTCTGTCTGATGTTTTTTT-CTTCTAAGTATACCTA-TGGCTACAAGAAG----------AA---GTATGTAA-GTATTG--A--ATTGATGCA-TAT--ATTTTT--ATTTGATAAT-TAC-ATCAG-----------ttattttaaataatt
gi|5 : CAT-CGGGCATCC-ATTTATTTATTCGTTTTTA-TCATCCG-TCTTTAAGGTTTTTATTAAC------TATCA--TTTTATT--A-TT--TA---TTGTCA---------T-CA-ATTTG--TTTCAG--ATGG--ATT-TTG-CAG--A-AATTGACTATATGATCATTAGCTACGGACTT--AGAT-GTAT-GTAATATTAGTTAATA-GTGGT-T-TCG--CTATGCATCGAA-CA--------GGGAA-A--------ACGGTTGGCTGGGG----C-A---GA-------AGGATAAGAGAAGAC-AGCGAGAG-AAATG-GAAGAGAA-C----CAAACA-GAAGAA-ACCGActaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatacatcgggcatccatttatttattcgtttttatcatccgtctttaaggtttttattaactatcattttattatttattgtcatcaatttgtttcagatggattttgcagaaattgactatatgatcattagctacggacttagatgtatgtaatattagttaatagtggtttcgctatgcatcgaacagggaaaacggttggctggggcagaaggataagagaagacagcgagagaaatggaagagaaccaaacagaagaaaccgaggattaacactt
gi|6 : tctgcacttttaactgaaagtcattctcactcaaaagaactgtgatgtcactgccacatcactacatatctctgtctgatgtttttttcttctaagtatacctatggctacaagaagaagtatgtaagtattgaattgatgcatatatttttatttgataattacatcagctaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntataGC----TTACATTGGC-CCAATGTTGGTA--T--ATG---GTTGGTAAATCGGCTACATATTGCAGTT-GGCAGAACGGCATTGGA-CCAACAggattaacactt
gi|6 : gatagcaaGGC-ATTGGA-CCAACATATATTGGACC-GA-CACTG-AA-TTATC-ACTGTTGGA-TCACTGAC-AT-TGTTCCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTAAGT-GTT-GGT-GGA-TTGACA-TCGGT-CCAATGT-T-GGACCGACATTGTT-GAA--CTAAT-GTTGGGACATA-ATCAT-TG-TACATGTACCAA--TGTT-G--GG-TCG-ATATC--TTA-TA-GATCTC--A-CTACTC-----GCTGTT-GGCACAAACACACAGAACCCACG---------T----------TA-A--------AG-----A---TTTTAAAGTA-TTTTGATATA--ATAAA--CAAATAAATGGCTA--TA-AACAATTAAGTTTTAAATCTATT-CA-GTATTTT-GTGCATCAAAGTTGGAATTTAAAGAGCAATTAAATTC-AACT------------TT-GAGTTTACA-ATTTCAACATT--------TTAAAAACGATT-TACATGTTAGGCCTTCTC-TACtatattggaccgacactgaattatcactgttggatcactgacattgttccaacatcggaccgacgttgttattttaagtgttggtggattgacatcggtccaatgttggaccgacattgttgaactaatgttgggacataatcattgtacatgtaccaatgttgggtcgatatcttatagatctcactactcgctgttggcacaaacacacagaacccacgttaaagattttaaagtattttgatataataaacaaataaatggctataaacaattaagttttaaatctattcagtattttgtgcatcaaagttggaatttaaagagcaattaaattcaactttgagtttacaatttcaacattttaaaaacgatttacatgttaggccttctctac
gi|7 : gatagcaagcttacattggcccaatgttggtatatggttggtaaatcggctacatattgcagttggcagaacAACA-ACATTGGATC-GA-CATTGTAA-TTATC-ACTGTTGGA-TCATTGAC-AT-TGTTCCAACAC-CGGACCGA-TGTTCA-T-AT--T-----TTCAGT-GTT-GG-TGGA-TTGACA-TCGGT-CCATTA--TTGGACCGACATTATT-GAA--C-AAATGTTGGAAAATA-ATCAT-TG-T----TT-C-AT--TGTT-G--GG-TCC-ATATC--T---TA-------T-A-CTGCTC-----ACTGTT-GGCACAGACACACAAAACCAACA---------T----------TA-A--------AGCGG-C---------GAGTA-TTTTAATATA--AGGAATTTAAATAAATGGCTA--TA-C
gi|8 : ttatattggccctatgttggtatatatgactggtaaatcggctgcagagcgcagttggcagaacggcagtggCGGGTATCC-TCGTATA-ATT-GGTTATA-TC--TCG-CCCTTAA---------TAAA------TATT---TTTGATA--A-TT--TA---TT--TAA-------TGACA-TTT-G-TTTGCAGT-CTGGGAGTT-GCG-CAG--A-AAAAGACTA--TGCTCGTT---TA--GAC-T--AG-C--TAC-G-GAT--CAG-----A-GTTA-----TG--C-AT-C----GAGCA--------GGGAA-GAAGGGGGAA-GG--GGGGGGGG----TAA---GAAGAGCAGA-------AGAAGACTAGCGAGAG-AGGTG-GAAAAGAACC----AAAGCAGGAGGAC-ACCGATGT-G-AATTC--AACTAAATACAA-A-A-AATTTGATGATT-GATGTTT-TTGCA-AC
gi|9 : tatTTAGGCCTTCTC-AACTTGCCA-C-ATACACTTTTCT-GCAACTCGTG-CT-G-AAAGTC-TTCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------G-T--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGGACTA-TGGATGCCAGCAGACCGC---ATAA---TTATGTAA-GTA--G--GAAGCC-GCCTA-TAT--TTTTTTTTATTTGATA-T-CTCTATTAG-----------GCCcacattaggtccaggcattcggcacaatgtt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TCCCAGGTAGCAAGGGCACATTGGCCCAATGTTGGTTGTTTGGTTG
Unaligned ( gi|19 ): GATAACAAGCTTACATTAGCCCAATGTTGGGCCACTGTT
Unaligned ( gi|20 ): CCAGATAGCAATCTTACATTGGCCCAACGTTGG
Unaligned ( gi|21 ): TACTTAAGGGGATGATTAATAGTACGTCACGT
Unaligned ( gi|23 ): TTAAGGGGATGATTAATAGTACGTCACGT
Alignments
lowQualScore : 1 3333 555555555555 1 11 11 11 2222 222 11111111111111 1 222 11 11 1 111 1 33333333333333333 11111 11 111 222222 1 11 2222222 111111 22222 44444444444444444444444444444444 11111111 11 1111 1111 22222222 111111 3333333 4444444444444 1 77777777777777777777777777777777777777777777777777777777777777777777777777777777 1 1 111 1111 333333333 222222 111 11 11 111 11 33333333333 222 11 111 33333333333333333333 11 22222 333333333333333333333 22222222 33333333333 77777777777777777777777777 111111 1111 222222 11 1 111 3333333333333333333333333333 111111 111 44444444 22222 22222 11111
lowQualScore : 3 6 0000 000000000000 3 88 44 99 1111 222 66 0 5 5 44444444444444 5 111 8 66 33 0 5 5 1 5 5 1 5 999 1 5 7777 22222222222222222 44444 5 5 77 77 000 5 5 5 333333 1 77 5 77 7 5 5 22 5 5 8888888 1 66 5 88888 5 888888 5 2 5 5 33333 5 55555555555555555555555555555555 11111111 5 99 88 99 6 0 0 8 8 8 7777 6 0 8 1 7777 99 8 0 99999999 3 0 8 0 6 6 6 6 5 5 5 5 0 5 0 5 5 5 444444 0 66 5 5 888 33 5 3333333 0 888 5 1111111111111 3 5 777 0 9 5 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333 1 5 5 1 000 8 0 0000 999 8 66 8 222222222 333333 0 111 11 8 11 444 33 99999999999 8 0 88 000 8 3 8 11 8 444 3 99999999999999999999 8 8 44 0 00000 8 000000000000000000000 6 44444444 66666666666 99 99999999999999999999999999 6 6 6 777777 6 6 8 88 4444 555555 22 5 888 4 6 6 6 6 6 2 7777777777777777777777777777 777777 99 0 777 0 55555555 3 3 1 8 0 55555 55555 44444 999 1
lowQualScore : . . .... ............ . .. .. .. .... ... .. . . . .............. . ... . .. .. . . . . . . . . ... . . .... ................. ..... . . .. .. ... . . . ...... . .. . .. . . . .. . . ....... . .. . ..... . ...... . . . . ..... . ................................ ........ . .. .. .. . . . . . . .... . . . . .... .. . . ........ . . . . . . . . . . . . . . . . . . ...... . .. . . ... .. . ....... . ... . ............. . . ... . . . . ................................................................................ . . . . ... . . .... ... . .. . ......... ...... . ... .. . .. ... .. ........... . . .. ... . . . .. . ... . .................... . . .. . ..... . ..................... . ........ ........... .. .......................... . . . ...... . . . .. .... ...... .. . ... . . . . . . . ............................ ...... .. . ... . ........ . . . . . ..... ..... ..... ... .
lowQualScore : 3 7 7777 333333333333 3 33 00 22 2222 888 55 8 8 2 00000000000000 5 000 0 22 33 1 7 7 4 7 7 4 7 555 4 7 4444 77777777777777777 33333 7 7 99 00 000 7 7 7 777777 7 99 7 99 1 7 7 99 0 0 2222222 0 99 0 66666 7 000000 7 4 7 7 11111 0 77777777777777777777777777777777 99999999 7 22 33 22 7 8 8 0 0 0 0000 0 8 0 0 0000 00 0 8 00000000 8 8 0 8 7 7 7 7 0 0 0 0 4 0 2 0 0 0 444444 1 99 0 0 888 22 0 1111111 1 888 0 2222222222222 9 0 999 4 8 0 0 22222222222222222222222222222222222222222222222222222222222222222222222222222222 0 5 5 0 222 0 6 6666 000 0 66 0 000000000 000000 8 888 00 0 00 000 22 22222222222 0 8 88 666 0 2 0 00 0 444 2 88888888888888888888 0 0 22 8 00000 0 333333333333333333333 7 22222222 00000000000 22 77777777777777777777777777 7 7 7 777777 7 7 0 88 5555 000000 55 8 333 8 7 7 7 7 7 5 7777777777777777777777777777 777777 44 8 000 8 55555555 0 2 0 8 8 00000 00000 22222 555 0
consensus : GCAGTT-GGCAGAA---CGGCATTGGGC-C--GA---C--ATT-GA--CCGAC-GTTG-ATTAT----CACTGNTGGGTCGTTGACATCGTTCCAACNNNNNNNNNNNNNNGAATTATCTGACTGTGGGATTCAATGTTGAC-ATTGGG-CCAACG-ACATTGGACC-GA-CGTTGTAA-TTATC-ACTGTGGGA-TCATTGAC-AT-GTTTCCAACAT-CGGACCGA-CGTTGT-T-AT----T-----T------TCAG-----T-GTT-G--GTTGG---A-TTGACA-TCGGT-CCAATGT---TTGGACCGACATTG--TT-GAA--C-AAT-G-TTGGGACATAGATCAT-TG-TAT-----CCAA--TGTT-G--AT-TCA-ATATC--T-A-TA-GAGTTCT-A-CTGCTC-----ACTGTT-GGCACAAACACACAGAACCAACG---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAGTAAATGGCTA--TA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAGGAACAATTAAATTCAAACTTT-AACTA----TT-NAGTTTACA-ACTTCAACAGT--------TTAAAAACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGGACTA-TGGATGCCAGCAGACCGC---ATAA---TTATGTAA-GTA--G--G--GCC-NTATA-TAT--NTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTCNCCTGTATAGTTATGNTCAT-CGGGTATCC-ATTTA-TTATT-GTTTATA-TCATCCG-CCCTTAA---------TAAA------TATTA--TTTGATA--A-TT--TA---TTGCTAA-------TT-CA-TTTTG-TTTTCAGTCCTGGGAGTT-TCG-CAG--A-AAAAGACTAT-TGCTCGTT---TA-GGACTA-AG--C--TAC-G-GATTCCAG-----A-GTTAT-G-TCG--C-ATGC----GA-CA--------GGGAAG--A--------GG--GGGGGGGGT---A---G------AA-AG---A---AGAAGAC-AGCGAGAG-AGGTG-GAAAAGAACC----CAAACA-GAGGAC-ACCGATGT-G-AATTTCAAACT--ATTCAA--ATA-AATTTGATGATT-GACGTTTATTGCA---ACATT-GGTCCA-GCG-TT-GGCNCAA-G--TG-TCAAAT----AGCT----GCGCATTGGGC----CTACATTGGG-CCAACGTT-GTAATT--ATGA-TGTTGGATAACTCGGC-----GTTG-----GGCANAACTACATTGGNGCCAACAGTGGGAGTANTATTGTA
Reference ( family-744 ) : GCAGTT-GGCAGAA---CGGCATTGGGC-C--GA---C--ATT-GA--CCGAC-GTTG-ATTAT----CACTGTTGGGTCGTTGACATCGTTCCAACNNNNNNNNNNNNNNGAATTATCTGACTGTGGGATTCAATGTTGAC-ATTGGG-CCAACG-ACATTGGACC-GA-CGTTGTAA-TTATC-ACTGTGGGA-TCATTGAC-AT-GTTTCCAACAT-CGGACCGA-CGTTGT-T-AT----T-----T------TCAG-----T-GTT-G--GTTGG---A-TTGACA-TCGGT-CCAATGT---TTGGACCGACATTG--TT-GAA--C-AAT-G-TTGGGACATAGATCAT-TG-TAT-----CNAA--TGTT-G--AT-TCA-ATATC--T-A-TA-GAGTTCT-A-CTGCTC-----ACTGTT-GGCACAAACACACAGAACCAACG---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAGTAAATGGCTA--TA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAGGAACAATTAAATTCAAACTTT-AACTA----TT-NAGTTTACA-ACTTCAACAGT--------TTAAAAACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGGACTA-TGGATGCCAGCAGACCGC---ATAA---TTATGTAA-GTA--G--G--GCC-NTATA-TAT--NTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTCNCCTGTATAGTTATGNTCAT-CGGGTATCC-ATTTA-TTATT-GTTTATA-TCATCCG-CCCTTAA---------TAAA------TATTA--TTTGATA--A-TT--TA---TTGCTAA-------TT-CA-TTTTG-TTTTCAGTCCTGGGAGTT-TCG-CAG--A-AAAAGACTAT-TGCTCGTT---TA-GGACTA-AG--C--TAC-G-GATTCCAG-----A-GTTAT-G-TCG--C-ATGC----GA-CA--------GGGAAG--A--------GG--GGGGGGGGT---A---G------AA------A---AGAAGAC-AGCGAGAG-AGGTG-GAAAAGAACC----CAAACA-GAGGAC-ACCGATGT-G-AATTTCAAACT--ATTCAA--ATA-AATTTGATGATT-GACGTTTATTGCA---ACGTT-GGTCCA-ACG-TT-GGCCCAA-G--TG-TCAAAT----AGCT----GCGCATTGGGC----CTACATTGGG-CCAACGTT-GTAATT--ATGA-TGTTGGATNACTTGGC-----GTTG-----GGCANAACTACATTGGNGCCAACAGTGGGAGTANTATTGTA
gi|1 : GCAGTT-GGCAGAA---CGGCATTGGGC-C--AA---C--ATTCGA--CCGAC-ATTG-CNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTATCTGACTGTGGGATTCAATGTGGACGATTGCTTCCAATG-ACATCG-ACC-GAATGTTGTAAGTTATCTACTGTGGGACTCATTGAC-AT-GTTTTCAAAGT-CGGACCGA-CGTTGGAT-AT----TGGGTGT------CAAG-----TCGTTTG--GTTGG---AGCTGACAATCGGT-CCAATGTA--TTGGACCGCTAT-G--TT-GAA--C-AAT-GGTTGGGACATAGATCATGTGATAT-----CGAACTTGTT-G--AT-TCA-ATATC--T-A-TA-GAGATCT-A-CTGCTC-----ACTGTT-GGTACAAACACACAAAACCAGCA---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--TAAGTAAATGACTA--TA-CACAATTAATTTTTAAATCTGTT-CA-ATATTTT-GTGCATCAAGGATGGA----AAGGAACAAATAAATTCAAACTTT-AACAA----TT-CAGTTTACA-ACTTCAACAGT--------TCAAAGACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTT-ATG---AGTAGGACTA-TGGATGCCATCAGACCGC---ATAAACTTTATGTAA-GTA--G--G--GCC-CTATA-TAT--CTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGCCTATATAGTTATGTTC---TGGGTATCC-ATTTA-TTATT-GATTATA-TGAATCG-GCCTTAA---------TAAA------TATTA--TTTGATA--ATTT--TA---TTTCTAA-------TT-CA-TTTTGTTTTTCAGTCCTGGGAGTT-TCG-TAG--A-AAAAGA-TAT-TGCTCGTT---TA-AGACTA-AG--CAAAACAG-GATTCCAG-----A-GTT-T-GATTG--C-ATGC----GA-CA--------GGGAAG--A--------GG--GGGGGGAGC---A---G-------A------A---AGAAGAC-CGCGAGAG-AGGTG-GAAAAGAACCATTGCAAACA-GAGGAC-ACAGATGT-G-ACTTTCAAACT--ATTCAAT-CTA-AATTTGATGATT-GACGTTTATTACA---ACATT-GGT-CA-GCA-TT-GGCCCAA-G--TG-TCAAAT----AGCT----GTGCATTGGGC----CTACATTGGG-CCAACA-----AATTAAAAGA-TGTTGAATAACTTGGC-----GTTG-----GACACA--TACATTGGCGCCAACAATAGGAGTATTATTGTA
gi|10 : ---ACATT-GGCCCA-ACG-TT-GACCCAT-GGTTG-GTAAATCGGCAACTTATCGC-CGTTGG-CAGAACGGCATTGGA-CCGACATT-GTAATT--ATCACTGTGGGATCA-TTGAC-----ATTG-----AGCAAAATTACATTG--GCCAAataaca
gi|10 : ccagatagcaagcttAACG-GCATTGGACC-GA-CATTGTAA-TTATC-ACTGTGGGA-TCATTGAC-AT-acataattttccaacatcggaccaaggagggagatatgtgatacatactaaaatgaacaatgtgttaaaagtaatcattgtc
gi|11 : ccagatagcaagcttacattggcccaacgttgacccatggttggtaaatcggcaacttatcgccgttggcagACTGTGGGAT-CA---TTGAT-ATTGGG-CCAAC----ATTGGACC-GA-CATTGTAA-TTATC-ACTGTGGGA-TCATTGACAAT-G-TTCCAACAT-CGGACCGA-CGTTGT-T-AT----T-----T------TCAG-----T-GTT-G--G-TGG---A-TTGGCA-TCGGT-CCAATG----TTGGACCGACATTG--TT-GAA--C-------------C----ATCAT-TG-TA------CCAA--TGTT-G--AT-TCA-ATATT--T-ATTA-GAGTTCT-A-TTGCTC-----ACTGTT-GGCACAAACACAtgagcaaaattacattggccaaacataattttccaacatcggaccaaggagggagatatgtgatacatactaaaatgaacaatgtgttaaaagtaatcattgtc
gi|12 : ataatcC----GA-CA--------GGAAGG--G--------GG--GGGGGGAGT---AAGAG------AACAG---A---AGAAGAC-AGCGAGAG-AGGTGCGAAAAA---C----GAAACA-GAGGACAACCGATGT-GAAATTTCAAACT--A-TCAAAGATA-AATTTGATGATT--ACGTTT-CTGCA---ACATT-GGTCCA-ACGATT-GGCACAATG--TT-TC-AAT----A-CT----G-GCATTGGAC----CAATATTGAA---AATGTT-G-AAT
gi|13 : tatgcaCA-C-ATA-AGTTT-CT-GCA-CTC-TGACTTG-AAAGTCATCCCCGACCAACAG--ACTGTGATG-TCC-CTGTCGCAT-CACTACTATAGGATAGCT-TCT-TTTGA-G-CTTTTT-CTT---AGTAG-------------CAGCAGA---C---A-AA---TTAT-TAAGGTATTGATG--ATT-GT-TA-TAT--ATTTTTTAATTTGATAAT-CTC-ATT
gi|14 : GCAGTTTGGCAAAAAGACGGCAATGGGCGC--GAGACT--ATT-GGGTCCGAC-GTTGAATTAT----CACTG-TGGGTCATTGACATTGTT-CAACtttaattaaaat
gi|15 : ccagatagcaagcttacattggccaacgttggttatgtgggtaattccccggcccatcatattcggTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCC--------------TGTGATG-TCA-TTGTC----------------------TCTCTGTCTAATA-TTTTTTTCTG---AGTAGGCCTAATGGATGCGAGCAGA--G----ATAA---TTTTGTAA-GTA------------TTG--------ATTTTTAAATTTGATATT-CTC-ATCAc
gi|16 : GCAGTT-G-CAGA----CGGCATTGGAC-CAAAA---CAAATT-GA--CCTACAATTG--TTATATCCCACTGGT-AGTCG-TAACATCA-TCCAAttctaaaattaa
gi|17 : gcaagcatcttacagtgtggcccaacgatggtatatggtatggtaatatccaggcaacagtatcTCAT-NN-NNN-----NNNN--NNNN-N--NN-NNN-NNNNN--N-N-NN-NAGTTCT-A-CTGCTC-----ACTGTT-GGCACAA--ACACAGAACCAACGTTGAAGAGAT----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTG
gi|2 : gCA-ACAT-GGACCCGA-CATTGTAA-TTATC-AC-GTGGGA-TC-TCGAC-ATTGTTTCCAACATACGGACCGA-CGTTGT-TTAT----T-----T------TCAG-----T-GTT-G--GT--G---A-TGGACA--CGGT-CCAATGT---T-GGACCTA-ATTG--TT-GAATCC-AAT-G-TTGGGACATAG-TCAT-TG-TAC-----CAAA--TGTT-G--ATATCA-AT------------GAGCTAT-ATCTGCTCGAGCAACTGTTTGGCACAAACACACAGAGCCAACG---------TTAAGGAGGTAAATA--------AAC-AACA---TTTTAAAGTAATTTTGATATATAATGAAGCCAAGTAAATGGCTA--TAACACAATTA-TTTTTAAATCTATTTCA-ATATTTTTGTGCATCAAAGATGGA----AAGAAACAATTAAATTCAAACTTT-AACTA----TTCCAGTTTACA-ACTTC-ACAGG--------TTTAAAACAATTGTAC--GATAGGCCTTCTCAAACTTGCCA-CAATA-ACTTTTCTGGCA-CTCGTGACT-GAAAAGTCTTCCCCG-CCAAGAAGAACTGTGATGTTCA-CTGTCGCAT-CACTC------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTA-GACTA-TGGATGCCAGCAGACC-CTCAATAA---TTATGTAA-GTA-----G--GCC-CTATA-TATAATTTTTTTAATTTGATATTCCTCGATTAGCGATATTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTCTCCTGT-TAGTT-TGATCATGCGGGTATCCAATGTA---ATT--TTTATATTCCTCGGCCCCTTAA---------TAAATTACTGTATTAATTTTGATATGA-TTTCTACGTTCGCTAGTTAGATCTT-CATTTTTG-TTTCAAGTCCTGGGAGTTCTCGCCAG--ACAAAAGACTAT-GCCTCGTT---TA-GT-CTACAG--C--TAC-G-GATT-CAG-----ATGTTATCA-TCGGAC-AAGG----GA-AAGTAAAGGGGGGAAGGAG--------GG--GGGGGGGGTAAGA---G------AA------ACAGAGAAGAC-AGCGAGA--AGGTG-G-AAAGAACC----C-AACA-GAGGAC-ACCGATGT-G--ATTTCACACT--AATCAA--ATATAATTTGATGATTGGACGTATTTTGCAC--ATTTT-GGT-CA-GCA-TT-GGCACAA----TGTTCAAGT----AACT----GGCCATTGGG-----CTACATTGGGCCCAACATT-AAAATT---T--------GATAACTGCGT-----GTTG-----GGC----CTACATTGGGGCCAACAGTGAGAGTAATATTGTA
gi|22 : c-ATTAT----CACTGT-GGGTCATTGACATTGTTCggcaca
gi|3 : aC-----AATGTT-GGTACAAACACACAAAACCAAGT---------T----------AA-AGAGGTGGAAAC-A-TA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAATAAAGGACTAGATA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAAGAATAATTAAACTCAAACTTT-AACTA----CT-GGGTTTACA-ATTACAGCAATATGAAAAATTAAAA-CAATT-TACATGGCAGGCCTTCTC-AACTTGCCT-C-TTA-ACTTCTCT-GCA-CTCGTGACT-G-AAAGTCATCCTCG-CCAAAAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-ATTATT-CTG---AGTAGGCCTA-TTGACACCAGCAGA---C---ATAA---TTATGTAA----------------ATATA-TAT--G-ATTTTGGTTTGATATT-CTC-ATTaa
gi|3 : -ATTTA-TT-TT-GTTTATA-TCATCCG-CCCTTGA---------TAAA------T-TTA--TTTGATA--A-TT--TA---TTG-TAA--------T-AA-TTTTG-TTTTCAG---AAGGAGTT-T-G-CAGAAA-AAAAGACTA--TACTC-----------------G--C--TAC-G-GATTCC-G-----A-GT--T-G-TTG--C-ATCG----GA-CA--------GGGAAG--A--------AG--GAGGGGGGTAAGA---G------AACAG---A---AGAAGAC-AGCGAGAGAAAGTG-GAAGAGAA-T----CAAACA-GAGGAC-ACCGATGTGG-AATTTCAAACtttctaaaattaatataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcttatttattttgtttatatcatccgcccttgataaatttatttgataatttattgtaataattttgttttcagaaggagtttgcagaaaaaaagactatactcgctacggattccgagttgttgcatcggacagggaagaaggaggggggtaagagaacagaagaagacagcgagagaaagtggaagagaatcaaacagaggacaccgatgtggaatttcaaacaccatgaatacaata
gi|4 : caatgttggtacaaacacacaaaaccaagttaaagaggtggaaacatattttaaagtattttgatataatgaacaaataaaggactagatacacaattaatttttaaatctattcaatattttgtgcatcaaagatggaaaagaataattaaactcaaactttaactactgggtttacaattacagcaatatgaaaaattaaaacaatttacatggcaggccttctcaacttgcctcttaacttctctgcactcgtgactgaaagtcatcctcgccaaaaagaactgtgatgtcactgtcgcatcactagatctctctgtctgatgattattctgagtaggcctattgacaccagcagacataattatgtaaatatatatgattttggtttgatattctcatttttctaaaattaatataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcttATTACA---ACGTC-GGTCCA-ATG--T-GGCCCAA----TG-TC--AT-----GCT----GC-CAATGCGA----CTATGTTGaccatgaatacaata
gi|4 : cagatagcagagcttacaatggcccacgttgggtattggttggtaaatcgagTGAC-ATTGGG-CCA-----CATTGGACC-GA-CGTTGTAA-TTATC-ACTGTGGGACTCATTGAC-AT--TGTCCAACATTCGGACCGAACGTTGT-G-ATGA--T-----T------TCAG-----T-GTT-G--GT-GG---A-TTGACA-TCGGTGCCAATGT---T-GGACCGATATTG--TTTGAA--CCAATTG-TTGGGACATAG-TCAT-TG-T-------CCAA--TGTTTGCCAT-TCACATATTCTT-A-TAAGAGTTCTTA-CTGCTCGAGC-ACTGTT-GGAACAAACACACAGAA-----G---------T----------AA-A--------AAC-A-CAACATTTTAAAGTA-TTT-GATATG--ATGAA--CAAGTAAATGGCTA--TA-CACAAT-GATTTTTAAATCTATT-CATATATTTT--TGCATTAAAAATGGA----ATGGAACAATTAATTCCTAACTTTTAACTAGGCCTA-TAGTTTACAGACTTCAAGAGT--------T-AAAAATAATT-TACAT-TTAGGC-TTCTC-AACTTGCCAAC-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGAAT-TCAGCTGTCGCATTCACTA------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGAACTA-TGGATGCCAGCAGACCGCA--ATAA---TTATGTAA-GTT--G--G--CCC-CAATATTGT--GTTTTTTAATTTGATA-T-CTC-ACTAG-----------GCtatcactgtgggactcattgacattgtccaacattcggaccgaacgttgtgatgatttcagtgttggtggattgacatcggtgccaatgttggaccgatattgtttgaaccaattgttgggacatagtcattgtccaatgtttgccattcacatattcttataagagttcttactgctcgagcactgttggaacaaacacacagaagtaaaaacacaacattttaaagtatttgatatgatgaacaagtaaatggctatacacaatgatttttaaatctattcatatatttttgcattaaaaatggaatggaacaattaattcctaacttttaactaggcctatagtttacagacttcaagagttaaaaataatttacatttaggcttctcaacttgccaacataacttttctgcactcgtgactgaaagtcatccccgccaagaagaactgtgaattcagctgtcgcattcactagatctctctgtctgatgctttttcttagtagaactatggatgccagcagaccgcaataattatgtaagttggccccaatattgtgttttttaatttgatatctcactaggcttattttaaataatt
gi|5 : cagatagcagagcttacaatggcccacgttgggtattggttggtaaatcgagcaacatagtcgcattggcagcaTCT-GCA-CTTTTAACT-G-AAAGTCATTCTCA-CTCAAAAGAACTGTGATG-TCA-CTGCCACAT-CACTA------CAT--ATCTCTGTCTGATGTTTTTTT-CTTCTAAGTATACCTA-TGGCTACAAGAAG----------AA---GTATGTAA-GTATTG--A--ATTGATGCA-TAT--ATTTTT--ATTTGATAAT-TAC-ATCAG-----------ttattttaaataatt
gi|5 : CAT-CGGGCATCC-ATTTATTTATTCGTTTTTA-TCATCCG-TCTTTAAGGTTTTTATTAAC------TATCA--TTTTATT--A-TT--TA---TTGTCA---------T-CA-ATTTG--TTTCAG--ATGG--ATT-TTG-CAG--A-AATTGACTATATGATCATTAGCTACGGACTT-AGATG--TAT-GTAATATTAGTTAATA-GTGGT-T-TCG--CTATGCATCGAA-CA--------GGGAAA--AC-------GGTTGGCTGGGGC---A---GAAGGATAA------G---AGAAGAC-AGCGAGAG-AAATG-GAAGAGAA-C----CAAACA-GAAGAA-ACCGActaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatacatcgggcatccatttatttattcgtttttatcatccgtctttaaggtttttattaactatcattttattatttattgtcatcaatttgtttcagatggattttgcagaaattgactatatgatcattagctacggacttagatgtatgtaatattagttaatagtggtttcgctatgcatcgaacagggaaaacggttggctggggcagaaggataagagaagacagcgagagaaatggaagagaaccaaacagaagaaaccgaggattaacactt
gi|6 : tctgcacttttaactgaaagtcattctcactcaaaagaactgtgatgtcactgccacatcactacatatctctgtctgatgtttttttcttctaagtatacctatggctacaagaagaagtatgtaagtattgaattgatgcatatatttttatttgataattacatcagctaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntataGC----TTACATTGGC-CCAATGTTGGTA--T--ATG---GTTGG-TAAATCGGCTACATATTGCAGTTGGCAGAACGGCATTGGA-CCAACAggattaacactt
gi|6 : gatagcaaACAT-TGGCCCAA-TGTTGG-T-ATATGGT-----TGGTAAATCGGCTACAT-ATT-GCAGTTGGCAGA-ACGGCA-TTGGA-CCAACATATATTGGACCGACACTGAATT--AT--C-ACT-G-TTGGATCACTGA-CAT-TG-T-T-----CCAA--CATC-G--tatattggaccgacactgaattatcactgttggatcactgacattgttccaacatcggaccgacgttgttattttaagtgttggtggattgacatcggtccaatgttggaccgacattgttgaactaatgttgggacataatcattgtacatgtaccaatgttgggtcgatatcttatagatctcactactcgctgttggcacaaacacacagaacccacgttaaagattttaaagtattttgatataataaacaaataaatggctataaacaattaagttttaaatctattcagtattttgtgcatcaaagttggaatttaaagagcaattaaattcaactttgagtttacaatttcaacattttaaaaacgatttacatgttaggccttctctac
gi|6 : gatagcaagcttGGC-ATTGGA-CCAACATATATTGGACC-GA-CACTG-AA-TTATC-ACTGTTGGA-TCACTGAC-AT-TGTTCCAACAT-CGGACCGA-CGTTGT-T-AT----T-----T------TAAG-----T-GTT-G--GT-GG---A-TTGACA-TCGGT-CCAATGT---T-GGACCGACATTG--TT-GAA--CTAAT-G-TTGGGACATA-ATCAT-TG-TACATGTACCAA--TGTT-G--GG-TCG-ATATC--TTA-TA-GATCTC--A-CTACTC-----GCTGTT-GGCACAAACACACAGAACCCACG---------T----------TA-A--------AG-----A---TTTTAAAGTA-TTTTGATATA--ATAAA--CAAATAAATGGCTA--TA-AACAATTAAGTTTTAAATCTATT-CA-GTATTTT-GTGCATCAAAGTTGGAATTTAAAGAGCAATTAAATTC-AACT------------TT-GAGTTTACA-ATTTCAACATT--------TTAAAAACGATT-TACATGTTAGGCCTTCTC-TACgaccgacgttgttattttaagtgttggtggattgacatcggtccaatgttggaccgacattgttgaactaatgttgggacataatcattgtacatgtaccaatgttgggtcgatatcttatagatctcactactcgctgttggcacaaacacacagaacccacgttaaagattttaaagtattttgatataataaacaaataaatggctataaacaattaagttttaaatctattcagtattttgtgcatcaaagttggaatttaaagagcaattaaattcaactttgagtttacaatttcaacattttaaaaacgatttacatgttaggccttctctac
gi|7 : gatagcaagcttacattggcccaatgttggtatatggttggtaaatcggctacatattgcagttggcagaacGGC-AGTGG----AACA-ACATTGGATC-GA-CATTGTAA-TTATC-ACTGTTGGA-TCATTGAC-AT-TGTTCCAACAC-CGGACCGA-TGTTCA-T-AT----T-----T------TCAG-----T-GTT-G--G-TGG---A-TTGACA-TCGGT-CCATTA----TTGGACCGACATTA--TT-GAA--CAAAT-G-TTGGAAAATA-ATCAT-TG-T-T-----TCAT--TGTT-G--GG-TCC-ATATC--T---TA-------T-A-CTGCTC-----ACTGTT-GGCACAGACACACAAAACCAACA---------T----------TA-A--------AGCGG-C---------GAGTA-TTTTAATATA--AGGAATTTAAATAAATGGCTA--TA-C
gi|8 : ttatattggccctatgttggtatatatgactggtaaatcggctgcagagcgcagttggcagaacAT-CGGGTATCC-TCGTA-TAATT-GGTTATA-TC--TCG-CCCTTAA---------TAAA------TATT---TTTGATA--A-TT--TA---TT--TAA-------TGACA-TTT-G-TTTGCAGTC-TGGGAGTT-GCG-CAG--A-AAAAGACTAT--GCTCGTT---TA-G-ACTA--G--C--TAC-G-GAT--CAG-----A-GTTAT-G------C-AT-C----GAGCA--------GGGAAG--AAGGGGGAAGG--GGGGGGGGT---AA--G------AAGAGCAGA---AGAAGACTAGCGAGAG-AGGTG-GAAAAGAACC----AAAGCAGGAGGAC-ACCGATGT-G-AATTC--AACTAAATACAA--A-A-AATTTGATGATT-GATGTTT-TTGCAACCACATTAGGTCCAGGCA-TTCGGCACAA----TG-T
gi|9 : tTTAGGCCTTCTC-AACTTGCCA-C-ATACACTTTTCT-GCAACTCGTG-CT-G-AAAGTC-TTCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------G-T--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGGACTA-TGGATGCCAGCAGACCGC---ATAA---TTATGTAA-GTA--G--GAAGCC-GCCTA-TAT--TTTTTTTTATTTGATA-T-CTCTATTAG-----------GCCt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TCCCAGGTAGCAAGGGCACATTGGCCCAATGTTGGTTGTTTGGTTG
Unaligned ( gi|19 ): GATAACAAGCTTACATTAGCCCAATGTTGGGCCACTGTT
Unaligned ( gi|20 ): CCAGATAGCAATCTTACATTGGCCCAACGTTGG
Unaligned ( gi|21 ): TACTTAAGGGGATGATTAATAGTACGTCACGT
Unaligned ( gi|23 ): TTAAGGGGATGATTAATAGTACGTCACGT
Alignments
lowQualScore : 1 2222 1 2222222222 1 2222222222 11 1111 1 11111111111111 1 222 11 11 1 111 1 33333333333333333 11111 11 111 222222 1 11 2222222 111111 22222 44444444444444444444444444444444 11111111 11 1111 1111 22222222 111111 3333333 4444444444444 1 77777777777777777777777777777777777777777777777777777777777777777777777777777777 1 1 111 1111 333333333 222222 111 11 11 111 11 33333333333 222 11 111 33333333333333333333 11 22222 333333333333333333333 22222222 33333333333 444444444444444444444 111111 1111 222222 11 2 1111 55555555555555555555555555555 1111 11 111 33333333333 22222 22222 11111
lowQualScore : 0 2 0000 0 8888888888 0 3333333333 33 7777 6 2 44 1 5 5 44444444444444 5 111 8 66 33 0 5 5 1 5 5 1 5 999 1 5 7777 22222222222222222 44444 5 5 77 77 000 5 5 5 333333 1 77 5 77 7 5 5 22 5 5 8888888 66 5 88888 5 888888 5 2 5 5 33333 5 55555555555555555555555555555555 11111111 5 99 88 99 6 0 0 8 8 8 7777 6 0 8 1 7777 99 8 0 99999999 3 0 8 0 6 6 6 6 5 5 5 5 0 5 0 5 5 5 444444 0 66 5 5 888 33 5 3333333 0 888 5 1111111111111 3 5 777 0 9 5 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333 1 5 5 1 000 8 0 0000 999 8 66 8 222222222 333333 0 111 11 8 11 444 33 99999999999 8 0 88 000 8 3 8 11 8 444 3 99999999999999999999 8 8 44 0 00000 8 000000000000000000000 6 44444444 66666666666 99 888888888888888888888 6 6 6 777777 6 6 8 88 4444 555555 22 2 2222 99 6 6 6 77 6 7 66666666666666666666666666666 2222 5 33 333 0 88888888888 1 8 1 55555 55555 44444 999 1
lowQualScore : . . .... . .......... . .......... .. .... . . .. . . . .............. . ... . .. .. . . . . . . . . ... . . .... ................. ..... . . .. .. ... . . . ...... . .. . .. . . . .. . . ....... .. . ..... . ...... . . . . ..... . ................................ ........ . .. .. .. . . . . . . .... . . . . .... .. . . ........ . . . . . . . . . . . . . . . . . . ...... . .. . . ... .. . ....... . ... . ............. . . ... . . . . ................................................................................ . . . . ... . . .... ... . .. . ......... ...... . ... .. . .. ... .. ........... . . .. ... . . . .. . ... . .................... . . .. . ..... . ..................... . ........ ........... .. ..................... . . . ...... . . . .. .... ...... .. . .... .. . . . .. . . ............................. .... . .. ... . ........... . . . ..... ..... ..... ... .
lowQualScore : 0 5 8888 0 0000000000 0 2222222222 66 0000 6 2 66 8 8 2 00000000000000 5 000 0 22 33 1 7 7 4 7 7 4 7 555 4 7 4444 77777777777777777 33333 7 7 99 00 000 7 7 7 777777 7 99 7 99 1 7 7 99 0 0 2222222 99 0 66666 7 000000 7 4 7 7 11111 0 77777777777777777777777777777777 99999999 7 22 33 22 7 8 8 0 0 0 0000 0 8 0 0 0000 00 0 8 00000000 8 8 0 8 7 7 7 7 0 0 0 0 4 0 2 0 0 0 444444 1 99 0 0 888 22 0 1111111 1 888 0 2222222222222 9 0 999 4 8 0 0 22222222222222222222222222222222222222222222222222222222222222222222222222222222 0 5 5 0 222 0 6 6666 000 0 66 0 000000000 000000 8 888 00 0 00 000 22 22222222222 0 8 88 666 0 2 0 00 0 444 2 88888888888888888888 0 0 22 8 00000 0 333333333333333333333 7 22222222 00000000000 22 000000000000000000000 7 7 7 777777 7 7 0 88 5555 000000 55 0 5555 22 7 7 7 33 7 5 77777777777777777777777777777 1111 1 33 777 1 33333333333 7 2 4 00000 00000 22222 555 0
consensus : GCAGTT-GGCAGAA---CGGCATTGGGC-C--GA---C--ATT-GA--CCGAC-GTTG-ATTAT----CACTG-TGGGTCATTGACATCGTTCCAACNNNNNNNNNNNNNNGAATTATCTGACTGTGGGATTCAATGTTGAC-ATTGGG-CCAACG-ACATTGGACC-GA-CGTTGTAA-TTATC-ACTGTGGGA-TCATTGAC-AT-GTTTCCAACAT-CGGACCGA-CGTTGT-T-AT----T-----T------TCAG-----T-GTT-G--GTTGG---A-TTGACA-TCGGT-CCAATGT---TTGGACCGACATTG--TT-GAA--C-AAT-G-TTGGGACATAGATCAT-TG-TAT-----CCAA--TGTT-G--AT-TCA-ATATC--T-A-TA-GAGTTCT-A-CTGCTC-----ACTGTT-GGCACAAACACACAGAACCAACG---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAGTAAATGGCTA--TA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAGGAACAATTAAATTCAAACTTT-AACTA----TT-NAGTTTACA-ACTTCAACAGT--------TTAAAAACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGGACTA-TGGATGCCAGCAGACCGC---ATAA---TTATGTAA-GTA--G--G--GCC-NTATA-TAT--NTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTCNCCTGTATAGTTATGNTCAT-CGGGTATCC-ATTTA-TTATT-GTTTATA-TCATCCG-CCCTTAA---------TAAA------TATTA--TTTGATA--A-TT--TA---TTGCTAA-------TT-CA-TTTTG-TTTTCAGTCCTGGGAGTT-TCG-CAG--A-AAAAGACTAT-TGCTCGTT---TA-GGACTA-AG--C--TAC-G-GATTCCAG-----A-GTTAT-G-TCG--C-ATGC----GA-CA--------GGGAAG--A--------GG--GGGGGGGGT---A---GAA----AGA----AGAAGAC-AGCGAGAG-AGGTG-GAAAAGAACC----CAAACA-GAGGAC-ACCGATGT-G-AATTTCAAACT--ATTCAA--ATA-AATTTGATGATT-GACGTTT-TTGCA---ACA--TT-GGTCCA-GCG-TT-GGCACAA-G--TG-TCAAAT----AGC-T----G-GCATTGGGC----CTACATTGGA-CCAACGTT-GTAATT--ATGA-TGTTGGATAACTCGGC-----GTTG-----GGCANAACTACATTGGNGCCAACAGTGGGAGTANTATTGTA
Reference ( family-744 ) : GCAGTT-GGCAGAA---CGGCATTGGGC-C--GA---C--ATT-GA--CCGAC-GTTG-ATTAT----CACTGNTGGGTCGTTGACATCGTTCCAACNNNNNNNNNNNNNNGAATTATCTGACTGTGGGATTCAATGTTGAC-ATTGGG-CCAACG-ACATTGGACC-GA-CGTTGTAA-TTATC-ACTGTGGGA-TCATTGAC-AT-GTTTCCAACAT-CGGACCGA-CGTTGT-T-AT----T-----T------TCAG-----T-GTT-G--GTTGG---A-TTGACA-TCGGT-CCAATGT---TTGGACCGACATTG--TT-GAA--C-AAT-G-TTGGGACATAGATCAT-TG-TAT-----CCAA--TGTT-G--AT-TCA-ATATC--T-A-TA-GAGTTCT-A-CTGCTC-----ACTGTT-GGCACAAACACACAGAACCAACG---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAGTAAATGGCTA--TA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAGGAACAATTAAATTCAAACTTT-AACTA----TT-NAGTTTACA-ACTTCAACAGT--------TTAAAAACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGGACTA-TGGATGCCAGCAGACCGC---ATAA---TTATGTAA-GTA--G--G--GCC-NTATA-TAT--NTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTCNCCTGTATAGTTATGNTCAT-CGGGTATCC-ATTTA-TTATT-GTTTATA-TCATCCG-CCCTTAA---------TAAA------TATTA--TTTGATA--A-TT--TA---TTGCTAA-------TT-CA-TTTTG-TTTTCAGTCCTGGGAGTT-TCG-CAG--A-AAAAGACTAT-TGCTCGTT---TA-GGACTA-AG--C--TAC-G-GATTCCAG-----A-GTTAT-G-TCG--C-ATGC----GA-CA--------GGGAAG--A--------GG--GGGGGGGGT---A---GAA----AGA----AGAAGAC-AGCGAGAG-AGGTG-GAAAAGAACC----CAAACA-GAGGAC-ACCGATGT-G-AATTTCAAACT--ATTCAA--ATA-AATTTGATGATT-GACGTTTATTGCA---ACA--TT-GGTCCA-GCG-TT-GGCNCAA-G--TG-TCAAAT----AGC-T----GCGCATTGGGC----CTACATTGGG-CCAACGTT-GTAATT--ATGA-TGTTGGATAACTCGGC-----GTTG-----GGCANAACTACATTGGNGCCAACAGTGGGAGTANTATTGTA
gi|1 : GCAGTT-GGCAGAA---CGGCATTGGGC-C--AA---C--ATTCGA--CCGAC-ATTG-CNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTATCTGACTGTGGGATTCAATGTGGACGATTGCTTCCAATG-ACATCG-ACC-GAATGTTGTAAGTTATCTACTGTGGGACTCATTGAC-AT-GTTTTCAAAGT-CGGACCGA-CGTTGGAT-AT----TGGGTGT------CAAG-----TCGTTTG--GTTGG---AGCTGACAATCGGT-CCAATGTA--TTGGACCGCTAT-G--TT-GAA--C-AAT-GGTTGGGACATAGATCATGTGATAT-----CGAACTTGTT-G--AT-TCA-ATATC--T-A-TA-GAGATCT-A-CTGCTC-----ACTGTT-GGTACAAACACACAAAACCAGCA---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--TAAGTAAATGACTA--TA-CACAATTAATTTTTAAATCTGTT-CA-ATATTTT-GTGCATCAAGGATGGA----AAGGAACAAATAAATTCAAACTTT-AACAA----TT-CAGTTTACA-ACTTCAACAGT--------TCAAAGACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTT-ATG---AGTAGGACTA-TGGATGCCATCAGACCGC---ATAAACTTTATGTAA-GTA--G--G--GCC-CTATA-TAT--CTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGCCTATATAGTTATGTTC---TGGGTATCC-ATTTA-TTATT-GATTATA-TGAATCG-GCCTTAA---------TAAA------TATTA--TTTGATA--ATTT--TA---TTTCTAA-------TT-CA-TTTTGTTTTTCAGTCCTGGGAGTT-TCG-TAG--A-AAAAGA-TAT-TGCTCGTT---TA-AGACTA-AG--CAAAACAG-GATTCCAG-----A-GTT-T-GATTG--C-ATGC----GA-CA--------GGGAAG--A--------GG--GGGGGGAGC---A---GA-------A----AGAAGAC-CGCGAGAG-AGGTG-GAAAAGAACCATTGCAAACA-GAGGAC-ACAGATGT-G-ACTTTCAAACT--ATTCAAT-CTA-AATTTGATGATT-GACGTTTATTACA---ACA--TT-GGT-CA-GCA-TT-GGCCCAA-G--TG-TCAAAT----AGC-T----GTGCATTGGGC----CTACATTGGG-CCAACA-----AATTAAAAGA-TGTTGAATAACTTGGC-----GTTG-----GACACA--TACATTGGCGCCAACAATAGGAGTATTATTGTA
gi|10 : ---ACA--TT-GGCCCA-ACG-TT-GACCCAT-GGTTG-GTAAATCGGCAAC-TTATCGC-CGTTGG-CAGAACGGCATTGGA-CCGACATT-GTAATT--ATCACTGTGGGATCA-TTGAC-----ATTG-----AGCAAAATTACATTG--GCCAAataaca
gi|10 : ccagatagcaagcttGCCGTT-GGCAGAA---CGGCATTGGAC-C--GA---C--ATT-G-----------TA-ATTAT----CACTGTGGGATCATTGACATTGacataattttccaacatcggaccaaggagggagatatgtgatacatactaaaatgaacaatgtgttaaaagtaatcattgtc
gi|10 : ccagatagcaagcttacattggcccaacgttgacccatggttggtaaatcggcaacttatcAACG-GCATTGGACC-GA-CATTGTAA-TTATC-ACTGTGGGA-TCATTGAC-AT-agcaaaattacattggccaaacataattttccaacatcggaccaaggagggagatatgtgatacatactaaaatgaacaatgtgttaaaagtaatcattgtc
gi|11 : ccagatagcaagcttacattggcccaacgttgacccatggttggtaaatcggcaacttatcgccgttggcagACTGTGGGAT-CA---TTGAT-ATTGGG-CCAAC----ATTGGACC-GA-CATTGTAA-TTATC-ACTGTGGGA-TCATTGACAAT-G-TTCCAACAT-CGGACCGA-CGTTGT-T-AT----T-----T------TCAG-----T-GTT-G--G-TGG---A-TTGGCA-TCGGT-CCAATG----TTGGACCGACATTG--TT-GAA--C-------------C----ATCAT-TG-TA------CCAA--TGTT-G--AT-TCA-ATATT--T-ATTA-GAGTTCT-A-TTGCTC-----ACTGTT-GGCACAAACACAtgagcaaaattacattggccaaacataattttccaacatcggaccaaggagggagatatgtgatacatactaaaatgaacaatgtgttaaaagtaatcattgtc
gi|12 : ataatcC----GA-CA--------GGAAGG--G--------GG--GGGGGGAGT---AAGAGAAC---AGA----AGAAGAC-AGCGAGAG-AGGTGCGAAAAA---C----GAAACA-GAGGACAACCGATGT-GAAATTTCAAACT--A-TCAAAGATA-AATTTGATGATT--ACGTTT-CTGCA---ACA--TT-GGTCCA-ACGATT-GGCACAATG--TT-TC-AAT----A-C-T----G-GCATTGGAC----CAATATTGAA---AATGTT-G-AAT
gi|13 : tatgcaCA-C-ATA-AGTTT-CT-GCA-CTC-TGACTTG-AAAGTCATCCCCGACCAACAG--ACTGTGATG-TCC-CTGTCGCAT-CACTACTATAGGATAGCT-TCT-TTTGA-G-CTTTTT-CTT---AGTAG-------------CAGCAGA---C---A-AA---TTAT-TAAGGTATTGATG--ATT-GT-TA-TAT--ATTTTTTAATTTGATAAT-CTC-ATT
gi|14 : GC----TTACATTGG--CCAACGTT-G--GTT--ATG-----TGGGTAATTCtttaattaaaat
gi|14 : ccagatagcaaGCAGTTTGGCAAAAAGACGGCAATGGGCGC--GAGACT--ATT-GGGTCCGAC-GTTGAATTAT----CACTG-TGGGTCATTGACATTGTT-CAACcccggcccatcatattcgggcagtttggcaaaaagacggcaatgggcgcgagactattgggtccgacgttgaattatcactgtgggtcattgacattgttcaacc
gi|15 : ccagatagcaagcttacattggccaacgttggttatgtgggtaattccccggcccatcatattcggTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCC--------------TGTGATG-TCA-TTGTC----------------------TCTCTGTCTAATA-TTTTTTTCTG---AGTAGGCCTAATGGATGCGAGCAGA--G----ATAA---TTTTGTAA-GTA------------TTG--------ATTTTTAAATTTGATATT-CTC-ATCAc
gi|16 : GCAGTT-G-CAGA----CGGCATTGGAC-CAAAA---CAAATT-GA--CCTACAATTG--TTATATCCCACTGGT-AGTCG-TAACATCA-TCCAAttctaaaattaa
gi|17 : gcaagcatcttacagtgtggcccaacgatggtatatggtatggtaatatccaggcaacagtatcTCAT-NN-NNN-----NNNN--NNNN-N--NN-NNN-NNNNN--N-N-NN-NAGTTCT-A-CTGCTC-----ACTGTT-GGCACAA--ACACAGAACCAACGTTGAAGAGAT----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTG
gi|2 : gCA-ACAT-GGACCCGA-CATTGTAA-TTATC-AC-GTGGGA-TC-TCGAC-ATTGTTTCCAACATACGGACCGA-CGTTGT-TTAT----T-----T------TCAG-----T-GTT-G--GT--G---A-TGGACA--CGGT-CCAATGT---T-GGACCTA-ATTG--TT-GAATCC-AAT-G-TTGGGACATAG-TCAT-TG-TAC-----CAAA--TGTT-G--ATATCA-AT------------GAGCTAT-ATCTGCTCGAGCAACTGTTTGGCACAAACACACAGAGCCAACG---------TTAAGGAGGTAAATA--------AAC-AACA---TTTTAAAGTAATTTTGATATATAATGAAGCCAAGTAAATGGCTA--TAACACAATTA-TTTTTAAATCTATTTCA-ATATTTTTGTGCATCAAAGATGGA----AAGAAACAATTAAATTCAAACTTT-AACTA----TTCCAGTTTACA-ACTTC-ACAGG--------TTTAAAACAATTGTAC--GATAGGCCTTCTCAAACTTGCCA-CAATA-ACTTTTCTGGCA-CTCGTGACT-GAAAAGTCTTCCCCG-CCAAGAAGAACTGTGATGTTCA-CTGTCGCAT-CACTC------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTA-GACTA-TGGATGCCAGCAGACC-CTCAATAA---TTATGTAA-GTA-----G--GCC-CTATA-TATAATTTTTTTAATTTGATATTCCTCGATTAGCGATATTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTCTCCTGT-TAGTT-TGATCATGCGGGTATCCAATGTA---ATT--TTTATATTCCTCGGCCCCTTAA---------TAAATTACTGTATTAATTTTGATATGA-TTTCTACGTTCGCTAGTTAGATCTT-CATTTTTG-TTTCAAGTCCTGGGAGTTCTCGCCAG--ACAAAAGACTAT-GCCTCGTT---TA-GT-CTACAG--C--TAC-G-GATT-CAG-----ATGTTATCA-TCGGAC-AAGG----GA-AAGTAAAGGGGGGAAGGAG--------GG--GGGGGGGGTAAGA---GAA----ACAG---AGAAGAC-AGCGAGA--AGGTG-G-AAAGAACC----C-AACA-GAGGAC-ACCGATGT-G--ATTTCACACT--AATCAA--ATATAATTTGATGATTGGACGTATTTTGC----ACATTTT-GGT-CA-GCA-TT-GGCACAA----TGTTCAAGT----AAC-T----GGCCATTGGG-----CTACATTGGGCCCAACATT-AAAATT---T--------GATAACTGCGT-----GTTG-----GGC----CTACATTGGGGCCAACAGTGAGAGTAATATTGTA
gi|22 : c-ATTAT----CACTG-TGGGTCATTGACATTGTTCggcaca
gi|3 : aC-----AATGTT-GGTACAAACACACAAAACCAAGT---------T----------AA-AGAGGTGGAAAC-A-TA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAATAAAGGACTAGATA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAAGAATAATTAAACTCAAACTTT-AACTA----CT-GGGTTTACA-ATTACAGCAATATGAAAAATTAAAA-CAATT-TACATGGCAGGCCTTCTC-AACTTGCCT-C-TTA-ACTTCTCT-GCA-CTCGTGACT-G-AAAGTCATCCTCG-CCAAAAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-ATTATT-CTG---AGTAGGCCTA-TTGACACCAGCAGA---C---ATAA---TTATGTAA----------------ATATA-TAT--G-ATTTTGGTTTGATATT-CTC-ATTaa
gi|3 : -ATTTA-TT-TT-GTTTATA-TCATCCG-CCCTTGA---------TAAA------T-TTA--TTTGATA--A-TT--TA---TTG-TAA--------T-AA-TTTTG-TTTTCAG---AAGGAGTT-T-G-CAGAAA-AAAAGACTA--TACTC-----------------G--C--TAC-G-GATTCC-G-----A-GT--T-G-TTG--C-ATCG----GA-CA--------GGGAAG--A--------AG--GAGGGGGGTAAGA---GAAC---AGA----AGAAGAC-AGCGAGAGAAAGTG-GAAGAGAA-T----CAAACA-GAGGAC-ACCGATGTGG-AATTTCAAACtttctaaaattaatataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcttatttattttgtttatatcatccgcccttgataaatttatttgataatttattgtaataattttgttttcagaaggagtttgcagaaaaaaagactatactcgctacggattccgagttgttgcatcggacagggaagaaggaggggggtaagagaacagaagaagacagcgagagaaagtggaagagaatcaaacagaggacaccgatgtggaatttcaaacaccatgaatacaata
gi|4 : caatgttggtacaaacacacaaaaccaagttaaagaggtggaaacatattttaaagtattttgatataatgaacaaataaaggactagatacacaattaatttttaaatctattcaatattttgtgcatcaaagatggaaaagaataattaaactcaaactttaactactgggtttacaattacagcaatatgaaaaattaaaacaatttacatggcaggccttctcaacttgcctcttaacttctctgcactcgtgactgaaagtcatcctcgccaaaaagaactgtgatgtcactgtcgcatcactagatctctctgtctgatgattattctgagtaggcctattgacaccagcagacataattatgtaaatatatatgattttggtttgatattctcatttttctaaaattaatataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcttGCA---ACA--T--AGTC---GCA-TT-GGC---------------------AGCAT----G-ACATTGGGC----C-ACATTGGA-CCGACGTT-GTAATT--ATCACTGTGGGAaccatgaatacaata
gi|4 : cagatagcagagcttacaatggcccacgttgggtattggttggtaaatcgaTGAC-ATTGGG-CCA-----CATTGGACC-GA-CGTTGTAA-TTATC-ACTGTGGGACTCATTGAC-AT--TGTCCAACATTCGGACCGAACGTTGT-G-ATGA--T-----T------TCAG-----T-GTT-G--GT-GG---A-TTGACA-TCGGTGCCAATGT---T-GGACCGATATTG--TTTGAA--CCAATTG-TTGGGACATAG-TCAT-TG-T-------CCAA--TGTTTGCCAT-TCACATATTCTT-A-TAAGAGTTCTTA-CTGCTCGAGC-ACTGTT-GGAACAAACACACAGAA-----G---------T----------AA-A--------AAC-A-CAACATTTTAAAGTA-TTT-GATATG--ATGAA--CAAGTAAATGGCTA--TA-CACAAT-GATTTTTAAATCTATT-CATATATTTT--TGCATTAAAAATGGA----ATGGAACAATTAATTCCTAACTTTTAACTAGGCCTA-TAGTTTACAGACTTCAAGAGT--------T-AAAAATAATT-TACAT-TTAGGC-TTCTC-AACTTGCCAAC-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGAAT-TCAGCTGTCGCATTCACTA------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGAACTA-TGGATGCCAGCAGACCGCA--ATAA---TTATGTAA-GTT--G--G--CCC-CAATATTGT--GTTTTTTAATTTGATA-T-CTC-ACTAG-----------GCctcattgacattgtccaacattcggaccgaacgttgtgatgatttcagtgttggtggattgacatcggtgccaatgttggaccgatattgtttgaaccaattgttgggacatagtcattgtccaatgtttgccattcacatattcttataagagttcttactgctcgagcactgttggaacaaacacacagaagtaaaaacacaacattttaaagtatttgatatgatgaacaagtaaatggctatacacaatgatttttaaatctattcatatatttttgcattaaaaatggaatggaacaattaattcctaacttttaactaggcctatagtttacagacttcaagagttaaaaataatttacatttaggcttctcaacttgccaacataacttttctgcactcgtgactgaaagtcatccccgccaagaagaactgtgaattcagctgtcgcattcactagatctctctgtctgatgctttttcttagtagaactatggatgccagcagaccgcaataattatgtaagttggccccaatattgtgttttttaatttgatatctcactaggcttattttaaataatt
gi|5 : cagatagcagagcttacaatggcccacgttgggtattggttggtaaatcgagcaacatagtcgcattggcagcaTCT-GCA-CTTTTAACT-G-AAAGTCATTCTCA-CTCAAAAGAACTGTGATG-TCA-CTGCCACAT-CACTA------CAT--ATCTCTGTCTGATGTTTTTTT-CTTCTAAGTATACCTA-TGGCTACAAGAAG----------AA---GTATGTAA-GTATTG--A--ATTGATGCA-TAT--ATTTTT--ATTTGATAAT-TAC-ATCAG-----------ttattttaaataatt
gi|5 : CAT-CGGGCATCC-ATTTATTTATTCGTTTTTA-TCATCCG-TCTTTAAGGTTTTTATTAAC------TATCA--TTTTATT--A-TT--TA---TTGTCA---------T-CA-ATTTG--TTTCAG--ATGG--ATT-TTG-CAG--A-AATTGACTATATGATCATTAGCTACGGACTT-AGATG--TAT-GTAATATTAGTTAATA-GTGGT-T-TCG--CTATGCATCGAA-CA--------GGGAAA--AC-------GGTTGGCTGGGGC---A---GAA----GGATAAGAGAAGAC-AGCGAGAG-AAATG-GAAGAGAA-C----CAAACA-GAAGAA-ACCGActaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatacatcgggcatccatttatttattcgtttttatcatccgtctttaaggtttttattaactatcattttattatttattgtcatcaatttgtttcagatggattttgcagaaattgactatatgatcattagctacggacttagatgtatgtaatattagttaatagtggtttcgctatgcatcgaacagggaaaacggttggctggggcagaaggataagagaagacagcgagagaaatggaagagaaccaaacagaagaaaccgaggattaacactt
gi|6 : tctgcacttttaactgaaagtcattctcactcaaaagaactgtgatgtcactgccacatcactacatatctctgtctgatgtttttttcttctaagtatacctatggctacaagaagaagtatgtaagtattgaattgatgcatatatttttatttgataattacatcagctaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntataGC----TTACATTGGC-CCAATGTTGGTA--T--ATG---GTTGG-TAAATCGGCTACATATTGCAGTTGGCAGAACGGCATTGGA-CCAACAggattaacactt
gi|6 : gatagcaaACAT-TGGCCCAA-TGTTGG-T-ATATGGT-----TGGTAAATCGGCTACAT-ATT-GCAGTTGGCAGA-ACGGCA-TTGGA-CCAACATATATTGGACCGACACTGAATT--AT--C-ACT-G-TTGGATCACTGA-CAT-TG-T-T-----CCAA--CATC-G--tatattggaccgacactgaattatcactgttggatcactgacattgttccaacatcggaccgacgttgttattttaagtgttggtggattgacatcggtccaatgttggaccgacattgttgaactaatgttgggacataatcattgtacatgtaccaatgttgggtcgatatcttatagatctcactactcgctgttggcacaaacacacagaacccacgttaaagattttaaagtattttgatataataaacaaataaatggctataaacaattaagttttaaatctattcagtattttgtgcatcaaagttggaatttaaagagcaattaaattcaactttgagtttacaatttcaacattttaaaaacgatttacatgttaggccttctctac
gi|6 : gatagcaagcttGGC-ATTGGA-CCAACATATATTGGACC-GA-CACTG-AA-TTATC-ACTGTTGGA-TCACTGAC-AT-TGTTCCAACAT-CGGACCGA-CGTTGT-T-AT----T-----T------TAAG-----T-GTT-G--GT-GG---A-TTGACA-TCGGT-CCAATGT---T-GGACCGACATTG--TT-GAA--CTAAT-G-TTGGGACATA-ATCAT-TG-TACATGTACCAA--TGTT-G--GG-TCG-ATATC--TTA-TA-GATCTC--A-CTACTC-----GCTGTT-GGCACAAACACACAGAACCCACG---------T----------TA-A--------AG-----A---TTTTAAAGTA-TTTTGATATA--ATAAA--CAAATAAATGGCTA--TA-AACAATTAAGTTTTAAATCTATT-CA-GTATTTT-GTGCATCAAAGTTGGAATTTAAAGAGCAATTAAATTC-AACT------------TT-GAGTTTACA-ATTTCAACATT--------TTAAAAACGATT-TACATGTTAGGCCTTCTC-TACgaccgacgttgttattttaagtgttggtggattgacatcggtccaatgttggaccgacattgttgaactaatgttgggacataatcattgtacatgtaccaatgttgggtcgatatcttatagatctcactactcgctgttggcacaaacacacagaacccacgttaaagattttaaagtattttgatataataaacaaataaatggctataaacaattaagttttaaatctattcagtattttgtgcatcaaagttggaatttaaagagcaattaaattcaactttgagtttacaatttcaacattttaaaaacgatttacatgttaggccttctctac
gi|7 : gatagcaagcttacattggcccaatgttggtatatggttggtaaatcggctacatattgcagttggcagaacGGC-AGTGG----AACA-ACATTGGATC-GA-CATTGTAA-TTATC-ACTGTTGGA-TCATTGAC-AT-TGTTCCAACAC-CGGACCGA-TGTTCA-T-AT----T-----T------TCAG-----T-GTT-G--G-TGG---A-TTGACA-TCGGT-CCATTA----TTGGACCGACATTA--TT-GAA--CAAAT-G-TTGGAAAATA-ATCAT-TG-T-T-----TCAT--TGTT-G--GG-TCC-ATATC--T---TA-------T-A-CTGCTC-----ACTGTT-GGCACAGACACACAAAACCAACA---------T----------TA-A--------AGCGG-C---------GAGTA-TTTTAATATA--AGGAATTTAAATAAATGGCTA--TA-C
gi|8 : ttatattggccctatgttggtatatatgactggtaaatcggctgcagagcgcagttggcagaacAT-CGGGTATCC-TCGTA-TAATT-GGTTATA-TC--TCG-CCCTTAA---------TAAA------TATT---TTTGATA--A-TT--TA---TT--TAA-------TGACA-TTT-G-TTTGCAGTC-TGGGAGTT-GCG-CAG--A-AAAAGACTAT--GCTCGTT---TA-G-ACTA--G--C--TAC-G-GAT--CAG-----A-GTTAT-G------C-AT-C----GAGCA--------GGGAAG--AAGGGGGAAGG--GGGGGGGGT---AA--GAAGAGCAGA----AGAAGACTAGCGAGAG-AGGTG-GAAAAGAACC----AAAGCAGGAGGAC-ACCGATGT-G-AATTC--AACTAAATACAA--A-A-AATTTGATGATT-GATGTTT-TTGCAACCACA--TTAGGTCCAGGCA-TTCGGCACAA----TG-T
gi|9 : tTTAGGCCTTCTC-AACTTGCCA-C-ATACACTTTTCT-GCAACTCGTG-CT-G-AAAGTC-TTCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------G-T--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGGACTA-TGGATGCCAGCAGACCGC---ATAA---TTATGTAA-GTA--G--GAAGCC-GCCTA-TAT--TTTTTTTTATTTGATA-T-CTCTATTAG-----------GCCt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TCCCAGGTAGCAAGGGCACATTGGCCCAATGTTGGTTGTTTGGTTG
Unaligned ( gi|19 ): GATAACAAGCTTACATTAGCCCAATGTTGGGCCACTGTT
Unaligned ( gi|20 ): CCAGATAGCAATCTTACATTGGCCCAACGTTGG
Unaligned ( gi|21 ): TACTTAAGGGGATGATTAATAGTACGTCACGT
Unaligned ( gi|23 ): TTAAGGGGATGATTAATAGTACGTCACGT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111
lowQualScore : 1 2222 1 2222222222 1 2222222222222222 1111 11111111111111 1 222 11 11 1 111 1 11111111 22 2222 2 11 2222222 111111 22222 44444444444444444444444444444444 11111111 11 1111 1111 22222222 111111 3333333 4444444444444 1 77777777777777777777777777777777777777777777777777777777777777777777777777777777 1 1 111 1111 333333333 222222 111 11 11 111 11 33333333333 222 11 111 33333333333333333333 11 22222 333333333333333333333 22222222 33333333333 444444444444444444444 111111 1111 222222 11 1 1 1111 000000000000000000000000000000000000000000000000 1111111111 111 33333333 22222 22222 11111
lowQualScore : 0 2 0000 0 8888888888 0 4444444444444444 7777 8 2 1 5 5 44444444444444 5 111 8 66 33 0 5 5 1 5 5 1 5 999 3 6 888 66666666 6 6 22 6 6 6 0000 3 6 99 0 777 88 5 5 7777777 77 5 99999 5 888888 5 2 5 5 33333 5 55555555555555555555555555555555 11111111 5 99 88 99 6 0 0 8 8 8 7777 6 0 8 1 7777 99 8 0 99999999 3 0 8 0 6 6 6 6 5 5 5 5 0 5 0 5 5 5 444444 0 66 5 5 888 33 5 3333333 0 888 5 1111111111111 3 5 777 0 9 5 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333 1 5 5 1 000 8 0 0000 999 8 66 8 222222222 333333 0 111 11 8 11 444 33 99999999999 8 0 88 000 8 3 8 11 8 444 3 99999999999999999999 8 8 44 0 00000 8 000000000000000000000 6 44444444 66666666666 99 888888888888888888888 6 6 6 777777 6 6 8 88 4444 555555 22 0 0 0000 77 5 4 5 5 5 000000000000000000000000000000000000000000000000 0 8888888888 88 555 55555555 1 0 5 7 00000 00000 44444 999 1
lowQualScore : . . .... . .......... . ................ .... . . . . . .............. . ... . .. .. . . . . . . . . ... . . ... ........ . . .. . . . .... . . .. . ... .. . . ....... .. . ..... . ...... . . . . ..... . ................................ ........ . .. .. .. . . . . . . .... . . . . .... .. . . ........ . . . . . . . . . . . . . . . . . . ...... . .. . . ... .. . ....... . ... . ............. . . ... . . . . ................................................................................ . . . . ... . . .... ... . .. . ......... ...... . ... .. . .. ... .. ........... . . .. ... . . . .. . ... . .................... . . .. . ..... . ..................... . ........ ........... .. ..................... . . . ...... . . . .. .... ...... .. . . .... .. . . . . . ................................................ . .......... .. ... ........ . . . . ..... ..... ..... ... .
lowQualScore : 0 5 8888 0 0000000000 0 1111111111111111 0000 0 8 8 8 2 00000000000000 5 000 0 22 33 1 7 7 4 7 7 4 7 555 3 7 333 88888888 7 7 88 7 7 7 5555 7 7 22 0 555 22 7 7 9999999 99 7 66666 7 000000 7 4 7 7 11111 0 77777777777777777777777777777777 99999999 7 22 33 22 7 8 8 0 0 0 0000 0 8 0 0 0000 00 0 8 00000000 8 8 0 8 7 7 7 7 0 0 0 0 4 0 2 0 0 0 444444 1 99 0 0 888 22 0 1111111 1 888 0 2222222222222 9 0 999 4 8 0 0 22222222222222222222222222222222222222222222222222222222222222222222222222222222 0 5 5 0 222 0 6 6666 000 0 66 0 000000000 000000 8 888 00 0 00 000 22 22222222222 0 8 88 666 0 2 0 00 0 444 2 88888888888888888888 0 0 22 8 00000 0 333333333333333333333 7 22222222 00000000000 22 000000000000000000000 7 7 7 777777 7 7 0 88 5555 000000 55 0 0 8888 99 7 3 7 7 7 555555555555555555555555555555555555555555555555 2 6666666666 99 888 33333333 3 1 2 8 00000 00000 22222 555 0
consensus : GCAGTT-GGCAGAA---CGGCATTGGGC-C--GA---C--ATT-GA--CCGAC-GTTG-A-TTAT----CACTGTGGG-TCATTGACATCGTTCCAACNNNNNNNNNNNNNNGAATTATCTGACTGTGGGATTCAATGTTGAC-ATTGGG-CCAACG-ACATTGGACC-GA-CGTTGTAA-TTATC-ACTGTGGGA-TCATTGAC-AT-GTTTCCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTCAGT-GTT-GGTTGGA-TTGACA-TCGGT-CCAATGT-TTGGACCGACATTGTT-GAA--C-AAT-G-TTGGGACATAGATCAT-TG-TAC-----CCAA--TGTT-G--AT-TCA-ATATC--T-A-TA-GAGTTCT-A-CTGCTC-----ACTGTT-GGCACAAACACACAGAACCAACG---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAGTAAATGGCTA--TA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAGGAACAATTAAATTCAAACTTT-AACTA----TT-NAGTTTACA-ACTTCAACAGT--------TTAAAAACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGGACTA-TGGATGCCAGCAGACCGC---ATAA---TTATGTAA-GTA--G--G--GCC-NTATA-TAT--NTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTCNCCTGTATAGTTATGNTCAT-CGGGTATCC-ATTTA-TTATT-GTTTATA-TCATCCG-CCCTTAA---------TAAA------TATTA--TTTGATA--A-TT--TA---TTGCTAA-------TT-CA-TTTTG-TTTTCAGTCCTGGGAGTT-TCG-CAG--A-AAAAGACTAT-TGCTCGTT---TA-GGACTA-AG--C--TAC-G-GATTCCAG-----A-GTTAT-G-TCG--C-ATGC----GA-CA--------GGGAAG--A--------GG--GGGGGGGGT---A---GAA----AGA----AGAAGAC-AGCGAGAG-AGGTG-GAAAAGAACC----CAAACA-GAGGAC-ACCGATGT-G-AATTTCAAACT--ATTCAA--ATA-AATTTGATGATT-GACGT-TT-TTGCA---ACA--TT-GGTCCA-GCG-TT-GGCACAA-G--TG-TCAAAT----AGC-T---------------------G-G-CATTGGGC----C----TACATTGGA-CCGACGTT-G-AATT--ATNACTGTTGGATAACTCGGC-----GTTG-----GGCANAACTACATTGGNGCCAACAGTGGGAGTANTATTGTA
Reference ( family-744 ) : GCAGTT-GGCAGAA---CGGCATTGGGC-C--GA---C--ATT-GA--CCGAC-GTTG-A-TTAT----CACTGTGGG-TCATTGACATCGTTCCAACNNNNNNNNNNNNNNGAATTATCTGACTGTGGGATTCAATGTTGAC-ATTGGG-CCAACG-ACATTGGACC-GA-CGTTGTAA-TTATC-ACTGTGGGA-TCATTGAC-AT-GTTTCCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTCAGT-GTT-GGTTGGA-TTGACA-TCGGT-CCAATGT-TTGGACCGACATTGTT-GAA--C-AAT-G-TTGGGACATAGATCAT-TG-TAT-----CCAA--TGTT-G--AT-TCA-ATATC--T-A-TA-GAGTTCT-A-CTGCTC-----ACTGTT-GGCACAAACACACAGAACCAACG---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAGTAAATGGCTA--TA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAGGAACAATTAAATTCAAACTTT-AACTA----TT-NAGTTTACA-ACTTCAACAGT--------TTAAAAACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGGACTA-TGGATGCCAGCAGACCGC---ATAA---TTATGTAA-GTA--G--G--GCC-NTATA-TAT--NTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTCNCCTGTATAGTTATGNTCAT-CGGGTATCC-ATTTA-TTATT-GTTTATA-TCATCCG-CCCTTAA---------TAAA------TATTA--TTTGATA--A-TT--TA---TTGCTAA-------TT-CA-TTTTG-TTTTCAGTCCTGGGAGTT-TCG-CAG--A-AAAAGACTAT-TGCTCGTT---TA-GGACTA-AG--C--TAC-G-GATTCCAG-----A-GTTAT-G-TCG--C-ATGC----GA-CA--------GGGAAG--A--------GG--GGGGGGGGT---A---GAA----AGA----AGAAGAC-AGCGAGAG-AGGTG-GAAAAGAACC----CAAACA-GAGGAC-ACCGATGT-G-AATTTCAAACT--ATTCAA--ATA-AATTTGATGATT-GACGT-TT-TTGCA---ACA--TT-GGTCCA-GCG-TT-GGCACAA-G--TG-TCAAAT----AGC-T---------------------G-G-CATTGGGC----C----TACATTGGA-CCAACGTT-GTAATT--ATGA-TGTTGGATAACTCGGC-----GTTG-----GGCANAACTACATTGGNGCCAACAGTGGGAGTANTATTGTA
gi|1 : GCAGTT-GGCAGAA---CGGCATTGGGC-C--AA---C--ATTCGA--CCGAC-ATTGCN-NNNN----NNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTATCTGACTGTGGGATTCAATGTGGACGATTGCTTCCAATG-ACATCG-ACC-GAATGTTGTAAGTTATCTACTGTGGGACTCATTGAC-AT-GTTTTCAAAGT-CGGACCGA-CGTTGGAT-AT--TGGGTGTCAAGTCGTTTGGTTGGAGCTGACAATCGGT-CCAATGTATTGGACCGCTAT-GTT-GAA--C-AAT-GGTTGGGACATAGATCATGTGATAT-----CGAACTTGTT-G--AT-TCA-ATATC--T-A-TA-GAGATCT-A-CTGCTC-----ACTGTT-GGTACAAACACACAAAACCAGCA---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--TAAGTAAATGACTA--TA-CACAATTAATTTTTAAATCTGTT-CA-ATATTTT-GTGCATCAAGGATGGA----AAGGAACAAATAAATTCAAACTTT-AACAA----TT-CAGTTTACA-ACTTCAACAGT--------TCAAAGACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTT-ATG---AGTAGGACTA-TGGATGCCATCAGACCGC---ATAAACTTTATGTAA-GTA--G--G--GCC-CTATA-TAT--CTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGCCTATATAGTTATGTTC---TGGGTATCC-ATTTA-TTATT-GATTATA-TGAATCG-GCCTTAA---------TAAA------TATTA--TTTGATA--ATTT--TA---TTTCTAA-------TT-CA-TTTTGTTTTTCAGTCCTGGGAGTT-TCG-TAG--A-AAAAGA-TAT-TGCTCGTT---TA-AGACTA-AG--CAAAACAG-GATTCCAG-----A-GTT-T-GATTG--C-ATGC----GA-CA--------GGGAAG--A--------GG--GGGGGGAGC---A---GA-------A----AGAAGAC-CGCGAGAG-AGGTG-GAAAAGAACCATTGCAAACA-GAGGAC-ACAGATGT-G-ACTTTCAAACT--ATTCAAT-CTA-AATTTGATGATT-GACGT-TTATTACA---ACA--TT-GGT-CA-GCA-TT-GGCCCAA-G--TG-TCAAAT----AGC-T---------------------GTG-CATTGGGC----C----TACATTGGG-CCAACA-----AATTAAAAGA-TGTTGAATAACTTGGC-----GTTG-----GACACA--TACATTGGCGCCAACAATAGGAGTATTATTGTA
gi|10 : ---ACA--TT-GGCCCA-ACG-TT-GACCCAT-GGTTG-GTAAATCGGCAAC-TTATC-----------------G-C-CGTTGG-CAGAAC----GGCATTGGA-CCGACATT-GTAATT--ATCACTGTGGGATCA-TTGAC-----ATTG-----AGCAAAATTACATTG--GCCAAataaca
gi|10 : ccagatagcaagcttGCCGTT-GGCAGAA---CGGCATTGGAC-C--GA---C--ATT-G-----------TA-A-TTAT----CACTGTGGGATCATTGACATTGacataattttccaacatcggaccaaggagggagatatgtgatacatactaaaatgaacaatgtgttaaaagtaatcattgtc
gi|10 : ccagatagcaagcttacattggcccaacgttgacccatggttggtaaatcggcaacttatcAACG-GCATTGGACC-GA-CATTGTAA-TTATC-ACTGTGGGA-TCATTGAC-AT-agcaaaattacattggccaaacataattttccaacatcggaccaaggagggagatatgtgatacatactaaaatgaacaatgtgttaaaagtaatcattgtc
gi|11 : ccagatagcaagcttacattggcccaacgttgacccatggttggtaaatcggcaacttatcgccgttggcagACTGTGGGAT-CA---TTGAT-ATTGGG-CCAAC----ATTGGACC-GA-CATTGTAA-TTATC-ACTGTGGGA-TCATTGACAAT-G-TTCCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTCAGT-GTT-GG-TGGA-TTGGCA-TCGGT-CCAATG--TTGGACCGACATTGTT-GAA--C-------------C----ATCAT-TG-TA------CCAA--TGTT-G--AT-TCA-ATATT--T-ATTA-GAGTTCT-A-TTGCTC-----ACTGTT-GGCACAAACACAtgagcaaaattacattggccaaacataattttccaacatcggaccaaggagggagatatgtgatacatactaaaatgaacaatgtgttaaaagtaatcattgtc
gi|12 : ataatcC----GA-CA--------GGAAGG--G--------GG--GGGGGGAGT---AAGAGAAC---AGA----AGAAGAC-AGCGAGAG-AGGTGCGAAAAA---C----GAAACA-GAGGACAACCGATGT-GAAATTTCAAACT--A-TCAAAGATA-AATTTGATGATT--ACGT-TT-CTGCA---ACA--TT-GGTCCA-ACGATT-GGCACAATG--TT-TC-AAT----A-C-T---------------------G-G-CATTGGAC----C----AATATTGAA---AATGTT-G-AAT
gi|13 : tatgcaCA-C-ATA-AGTTT-CT-GCA-CTC-TGACTTG-AAAGTCATCCCCGACCAACAG--ACTGTGATG-TCC-CTGTCGCAT-CACTACTATAGGATAGCT-TCT-TTTGA-G-CTTTTT-CTT---AGTAG-------------CAGCAGA---C---A-AA---TTAT-TAAGGTATTGATG--ATT-GT-TA-TAT--ATTTTTTAATTTGATAAT-CTC-ATT
gi|14 : GC----T----TACATTGG--CCAACGTT-G--GTT--ATG-----TGGGTAATTCtttaattaaaat
gi|14 : ccagatagcaaGCAGTTTGGCAAAAAGACGGCAATGGGCGC--GAGACT--ATT-GGGTCCGAC-GTTG-AATTAT----CACTGTGGG-TCATTGACATTGTT-CAACcccggcccatcatattcgggcagtttggcaaaaagacggcaatgggcgcgagactattgggtccgacgttgaattatcactgtgggtcattgacattgttcaacc
gi|15 : ccagatagcaagcttacattggccaacgttggttatgtgggtaattccccggcccatcatattcggTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCC--------------TGTGATG-TCA-TTGTC----------------------TCTCTGTCTAATA-TTTTTTTCTG---AGTAGGCCTAATGGATGCGAGCAGA--G----ATAA---TTTTGTAA-GTA------------TTG--------ATTTTTAAATTTGATATT-CTC-ATCAc
gi|16 : GCAGTT-G-CAGA----CGGCATTGGAC-CAAAA---CAAATT-GA--CCTACAATTG---TTATATCCCACTGGTAG-TCG-TAACATCA-TCCAAttctaaaattaa
gi|17 : gcaagcatcttacagtgtggcccaacgatggtatatggtatggtaatatccaggcaacagtatcTCAT-NN-NNN-----NNNN--NNNN-N--NN-NNN-NNNNN--N-N-NN-NAGTTCT-A-CTGCTC-----ACTGTT-GGCACAA--ACACAGAACCAACGTTGAAGAGAT----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTG
gi|2 : gCA-ACAT-GGACCCGA-CATTGTAA-TTATC-AC-GTGGGA-TC-TCGAC-ATTGTTTCCAACATACGGACCGA-CGTTGT-TTAT--T-----TTCAGT-GTT-GGT--GA-TGGACA--CGGT-CCAATGT-T-GGACCTA-ATTGTT-GAATCC-AAT-G-TTGGGACATAG-TCAT-TG-TAC-----CAAA--TGTT-G--ATATCA-AT------------GAGCTAT-ATCTGCTCGAGCAACTGTTTGGCACAAACACACAGAGCCAACG---------TTAAGGAGGTAAATA--------AAC-AACA---TTTTAAAGTAATTTTGATATATAATGAAGCCAAGTAAATGGCTA--TAACACAATTA-TTTTTAAATCTATTTCA-ATATTTTTGTGCATCAAAGATGGA----AAGAAACAATTAAATTCAAACTTT-AACTA----TTCCAGTTTACA-ACTTC-ACAGG--------TTTAAAACAATTGTAC--GATAGGCCTTCTCAAACTTGCCA-CAATA-ACTTTTCTGGCA-CTCGTGACT-GAAAAGTCTTCCCCG-CCAAGAAGAACTGTGATGTTCA-CTGTCGCAT-CACTC------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTA-GACTA-TGGATGCCAGCAGACC-CTCAATAA---TTATGTAA-GTA-----G--GCC-CTATA-TATAATTTTTTTAATTTGATATTCCTCGATTAGCGATATTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTCTCCTGT-TAGTT-TGATCATGCGGGTATCCAATGTA---ATT--TTTATATTCCTCGGCCCCTTAA---------TAAATTACTGTATTAATTTTGATATGA-TTTCTACGTTCGCTAGTTAGATCTT-CATTTTTG-TTTCAAGTCCTGGGAGTTCTCGCCAG--ACAAAAGACTAT-GCCTCGTT---TA-GT-CTACAG--C--TAC-G-GATT-CAG-----ATGTTATCA-TCGGAC-AAGG----GA-AAGTAAAGGGGGGAAGGAG--------GG--GGGGGGGGTAAGA---GAA----ACAG---AGAAGAC-AGCGAGA--AGGTG-G-AAAGAACC----C-AACA-GAGGAC-ACCGATGT-G--ATTTCACACT--AATCAA--ATATAATTTGATGATTGGACGTATT-TTGC----ACATTTT-GGT-CA-GCA-TT-GGCACAA----TGTTCAAGT----AAC-T---------------------G-GCCATTGGG-----C----TACATTGGGCCCAACATT-AAAATT---T--------GATAACTGCGT-----GTTG-----GGC----CTACATTGGGGCCAACAGTGAGAGTAATATTGTA
gi|22 : c-A-TTAT----CACTGTGGG-TCATTGACATTGTTCggcaca
gi|3 : aC-----AATGTT-GGTACAAACACACAAAACCAAGT---------T----------AA-AGAGGTGGAAAC-A-TA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAATAAAGGACTAGATA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAAGAATAATTAAACTCAAACTTT-AACTA----CT-GGGTTTACA-ATTACAGCAATATGAAAAATTAAAA-CAATT-TACATGGCAGGCCTTCTC-AACTTGCCT-C-TTA-ACTTCTCT-GCA-CTCGTGACT-G-AAAGTCATCCTCG-CCAAAAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-ATTATT-CTG---AGTAGGCCTA-TTGACACCAGCAGA---C---ATAA---TTATGTAA----------------ATATA-TAT--G-ATTTTGGTTTGATATT-CTC-ATTaa
gi|3 : -ATTTA-TT-TT-GTTTATA-TCATCCG-CCCTTGA---------TAAA------T-TTA--TTTGATA--A-TT--TA---TTG-TAA--------T-AA-TTTTG-TTTTCAG---AAGGAGTT-T-G-CAGAAA-AAAAGACTA--TACTC-----------------G--C--TAC-G-GATTCC-G-----A-GT--T-G-TTG--C-ATCG----GA-CA--------GGGAAG--A--------AG--GAGGGGGGTAAGA---GAAC---AGA----AGAAGAC-AGCGAGAGAAAGTG-GAAGAGAA-T----CAAACA-GAGGAC-ACCGATGTGG-AATTTCAAACtttctaaaattaatataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcttatttattttgtttatatcatccgcccttgataaatttatttgataatttattgtaataattttgttttcagaaggagtttgcagaaaaaaagactatactcgctacggattccgagttgttgcatcggacagggaagaaggaggggggtaagagaacagaagaagacagcgagagaaagtggaagagaatcaaacagaggacaccgatgtggaatttcaaacaccatgaatacaata
gi|4 : caatgttggtacaaacacacaaaaccaagttaaagaggtggaaacatattttaaagtattttgatataatgaacaaataaaggactagatacacaattaatttttaaatctattcaatattttgtgcatcaaagatggaaaagaataattaaactcaaactttaactactgggtttacaattacagcaatatgaaaaattaaaacaatttacatggcaggccttctcaacttgcctcttaacttctctgcactcgtgactgaaagtcatcctcgccaaaaagaactgtgatgtcactgtcgcatcactagatctctctgtctgatgattattctgagtaggcctattgacaccagcagacataattatgtaaatatatatgattttggtttgatattctcatttttctaaaattaatataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcttGCA---ACA--T--AGTC---GCA-TT-GGCA---------------------GCAT---------------------G-A-CATTGGGC----C-----ACATTGGA-CCGACGTT-GTAATT--ATCACTGTGGGAaccatgaatacaata
gi|4 : cagatagcagagcttacaatggcccacgttgggtattggttggtaaatcgaTGAC-ATTGGG-CCA-----CATTGGACC-GA-CGTTGTAA-TTATC-ACTGTGGGACTCATTGAC-AT--TGTCCAACATTCGGACCGAACGTTGT-G-ATGAT-----TTCAGT-GTT-GGT-GGA-TTGACA-TCGGTGCCAATGT-T-GGACCGATATTGTTTGAA--CCAATTG-TTGGGACATAG-TCAT-TG-T-------CCAA--TGTTTGCCAT-TCACATATTCTT-A-TAAGAGTTCTTA-CTGCTCGAGC-ACTGTT-GGAACAAACACACAGAA-----G---------T----------AA-A--------AAC-A-CAACATTTTAAAGTA-TTT-GATATG--ATGAA--CAAGTAAATGGCTA--TA-CACAAT-GATTTTTAAATCTATT-CATATATTTT--TGCATTAAAAATGGA----ATGGAACAATTAATTCCTAACTTTTAACTAGGCCTA-TAGTTTACAGACTTCAAGAGT--------T-AAAAATAATT-TACAT-TTAGGC-TTCTC-AACTTGCCAAC-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGAAT-TCAGCTGTCGCATTCACTA------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGAACTA-TGGATGCCAGCAGACCGCA--ATAA---TTATGTAA-GTT--G--G--CCC-CAATATTGT--GTTTTTTAATTTGATA-T-CTC-ACTAG-----------GCctcattgacattgtccaacattcggaccgaacgttgtgatgatttcagtgttggtggattgacatcggtgccaatgttggaccgatattgtttgaaccaattgttgggacatagtcattgtccaatgtttgccattcacatattcttataagagttcttactgctcgagcactgttggaacaaacacacagaagtaaaaacacaacattttaaagtatttgatatgatgaacaagtaaatggctatacacaatgatttttaaatctattcatatatttttgcattaaaaatggaatggaacaattaattcctaacttttaactaggcctatagtttacagacttcaagagttaaaaataatttacatttaggcttctcaacttgccaacataacttttctgcactcgtgactgaaagtcatccccgccaagaagaactgtgaattcagctgtcgcattcactagatctctctgtctgatgctttttcttagtagaactatggatgccagcagaccgcaataattatgtaagttggccccaatattgtgttttttaatttgatatctcactaggcttattttaaataatt
gi|5 : cagatagcagagcttacaatggcccacgttgggtattggttggtaaatcgagcaacatagtcgcattggcagcaTCT-GCA-CTTTTAACT-G-AAAGTCATTCTCA-CTCAAAAGAACTGTGATG-TCA-CTGCCACAT-CACTA------CAT--ATCTCTGTCTGATGTTTTTTT-CTTCTAAGTATACCTA-TGGCTACAAGAAG----------AA---GTATGTAA-GTATTG--A--ATTGATGCA-TAT--ATTTTT--ATTTGATAAT-TAC-ATCAG-----------ttattttaaataatt
gi|5 : CAT-CGGGCATCC-ATTTATTTATTCGTTTTTA-TCATCCG-TCTTTAAGGTTTTTATTAAC------TATCA--TTTTATT--A-TT--TA---TTGTCA---------T-CA-ATTTG--TTTCAG--ATGG--ATT-TTG-CAG--A-AATTGACTATATGATCATTAGCTACGGACTT-AGATG--TAT-GTAATATTAGTTAATA-GTGGT-T-TCG--CTATGCATCGAA-CA--------GGGAAA--AC-------GGTTGGCTGGGGC---A---GAA----GGATAAGAGAAGAC-AGCGAGAG-AAATG-GAAGAGAA-C----CAAACA-GAAGAA-ACCGActaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatacatcgggcatccatttatttattcgtttttatcatccgtctttaaggtttttattaactatcattttattatttattgtcatcaatttgtttcagatggattttgcagaaattgactatatgatcattagctacggacttagatgtatgtaatattagttaatagtggtttcgctatgcatcgaacagggaaaacggttggctggggcagaaggataagagaagacagcgagagaaatggaagagaaccaaacagaagaaaccgaggattaacactt
gi|6 : tctgcacttttaactgaaagtcattctcactcaaaagaactgtgatgtcactgccacatcactacatatctctgtctgatgtttttttcttctaagtatacctatggctacaagaagaagtatgtaagtattgaattgatgcatatatttttatttgataattacatcagctaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntataGC----T----TACATTGGC-CCAATGTTGGTA--T--ATG---GTTGG-TAAATCGGCTACATATTGCAGTTGGCAGAACGGCATTGGA-CCAACAggattaacactt
gi|6 : gatagcaa---ACA--TT-GGCCCA-ATG-TT-GGTATAT-GGTTG-GTAAATC---GGC-TACATATTGCAGTTGGCAGAACG-G-CATTGGAC----CAACATATATTGGA-CCGACACT-G-AATT--ATCACTGTTGGATCACT-GAC-----ATTG-----tatattggaccgacactgaattatcactgttggatcactgacattgttccaacatcggaccgacgttgttattttaagtgttggtggattgacatcggtccaatgttggaccgacattgttgaactaatgttgggacataatcattgtacatgtaccaatgttgggtcgatatcttatagatctcactactcgctgttggcacaaacacacagaacccacgttaaagattttaaagtattttgatataataaacaaataaatggctataaacaattaagttttaaatctattcagtattttgtgcatcaaagttggaatttaaagagcaattaaattcaactttgagtttacaatttcaacattttaaaaacgatttacatgttaggccttctctac
gi|6 : gatagcaagcttGGC-ATTGGA-CCAACATATATTGGACC-GA-CACTG-AA-TTATC-ACTGTTGGA-TCACTGAC-AT-TGTTCCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTAAGT-GTT-GGT-GGA-TTGACA-TCGGT-CCAATGT-T-GGACCGACATTGTT-GAA--CTAAT-G-TTGGGACATA-ATCAT-TG-TACATGTACCAA--TGTT-G--GG-TCG-ATATC--TTA-TA-GATCTC--A-CTACTC-----GCTGTT-GGCACAAACACACAGAACCCACG---------T----------TA-A--------AG-----A---TTTTAAAGTA-TTTTGATATA--ATAAA--CAAATAAATGGCTA--TA-AACAATTAAGTTTTAAATCTATT-CA-GTATTTT-GTGCATCAAAGTTGGAATTTAAAGAGCAATTAAATTC-AACT------------TT-GAGTTTACA-ATTTCAACATT--------TTAAAAACGATT-TACATGTTAGGCCTTCTC-TACttccaacatcggaccgacgttgttattttaagtgttggtggattgacatcggtccaatgttggaccgacattgttgaactaatgttgggacataatcattgtacatgtaccaatgttgggtcgatatcttatagatctcactactcgctgttggcacaaacacacagaacccacgttaaagattttaaagtattttgatataataaacaaataaatggctataaacaattaagttttaaatctattcagtattttgtgcatcaaagttggaatttaaagagcaattaaattcaactttgagtttacaatttcaacattttaaaaacgatttacatgttaggccttctctac
gi|7 : gatagcaagcttacattggcccaatgttggtatatggttggtaaatcggctacatattgcagttggcagaacGGC-AGTGG----AACA-ACATTGGATC-GA-CATTGTAA-TTATC-ACTGTTGGA-TCATTGAC-AT-TGTTCCAACAC-CGGACCGA-TGTTCA-T-AT--T-----TTCAGT-GTT-GG-TGGA-TTGACA-TCGGT-CCATTA--TTGGACCGACATTATT-GAA--CAAAT-G-TTGGAAAATA-ATCAT-TG-T-T-----TCAT--TGTT-G--GG-TCC-ATATC--T---TA-------T-A-CTGCTC-----ACTGTT-GGCACAGACACACAAAACCAACA---------T----------TA-A--------AGCGG-C---------GAGTA-TTTTAATATA--AGGAATTTAAATAAATGGCTA--TA-C
gi|8 : ttatattggccctatgttggtatatatgactggtaaatcggctgcagagcgcagttggcagaacAT-CGGGTATCC-TCGTA-TAATT-GGTTATA-TC--TCG-CCCTTAA---------TAAA------TATT---TTTGATA--A-TT--TA---TT--TAA-------TGACA-TTT-G-TTTGCAGTC-TGGGAGTT-GCG-CAG--A-AAAAGACTAT--GCTCGTT---TA-G-ACTA--G--C--TAC-G-GAT--CAG-----A-GTTAT-G------C-AT-C----GAGCA--------GGGAAG--AAGGGGGAAGG--GGGGGGGGT---AA--GAAGAGCAGA----AGAAGACTAGCGAGAG-AGGTG-GAAAAGAACC----AAAGCAGGAGGAC-ACCGATGT-G-AATTC--AACTAAATACAA--A-A-AATTTGATGATT-GATGT-TT-TTGCAACCACA--TTAGGTCCAGGCA-TTCGGCACAA----TG-T
gi|9 : tTTAGGCCTTCTC-AACTTGCCA-C-ATACACTTTTCT-GCAACTCGTG-CT-G-AAAGTC-TTCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------G-T--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGGACTA-TGGATGCCAGCAGACCGC---ATAA---TTATGTAA-GTA--G--GAAGCC-GCCTA-TAT--TTTTTTTTATTTGATA-T-CTCTATTAG-----------GCCt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TCCCAGGTAGCAAGGGCACATTGGCCCAATGTTGGTTGTTTGGTTG
Unaligned ( gi|19 ): GATAACAAGCTTACATTAGCCCAATGTTGGGCCACTGTT
Unaligned ( gi|20 ): CCAGATAGCAATCTTACATTGGCCCAACGTTGG
Unaligned ( gi|21 ): TACTTAAGGGGATGATTAATAGTACGTCACGT
Unaligned ( gi|23 ): TTAAGGGGATGATTAATAGTACGTCACGT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111
lowQualScore : 1 2222 1 2222222222 111 111 11111 11111111111111 1 222 11 11 1 111 1 11111111 22 2222 2 11 2222222 111111 22222 44444444444444444444444444444444 11111111 11 1111 1111 22222222 111111 3333333 4444444444444 1 77777777777777777777777777777777777777777777777777777777777777777777777777777777 1 1 111 1111 333333333 222222 111 11 11 111 11 33333333333 222 11 111 33333333333333333333 11 22222 333333333333333333333 22222222 33333333333 444444444444444444444 111111 1111 222222 11 1 1 1111 000000000000000000000000000000000000000000000000 222222222222 1 1 33333 11
lowQualScore : 0 2 0000 0 0000000000 8 777 3 99 666 44444 6 0 1 5 5 44444444444444 5 111 8 66 33 0 5 5 1 5 5 1 5 999 3 6 888 66666666 6 6 22 6 6 6 0000 3 6 99 0 777 88 5 5 7777777 77 5 99999 5 888888 5 2 5 5 33333 5 55555555555555555555555555555555 11111111 5 99 88 99 6 0 0 8 8 8 7777 6 0 8 1 7777 99 8 0 99999999 3 0 8 0 6 6 6 6 5 5 5 5 0 5 0 5 5 5 444444 0 66 5 5 888 33 5 3333333 0 888 5 1111111111111 3 5 777 0 9 5 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333 1 5 5 1 000 8 0 0000 999 8 66 8 222222222 333333 0 111 11 8 11 444 33 99999999999 8 0 88 000 8 3 8 11 8 444 3 99999999999999999999 8 8 44 0 00000 8 000000000000000000000 6 44444444 66666666666 99 888888888888888888888 6 6 6 777777 6 6 8 88 4444 555555 22 0 0 0000 77 5 4 5 5 5 000000000000000000000000000000000000000000000000 777777777777 6 6 3 8888 0 3 2 6 11111 22 1
lowQualScore : . . .... . .......... . ... . .. ... ..... . . . . . .............. . ... . .. .. . . . . . . . . ... . . ... ........ . . .. . . . .... . . .. . ... .. . . ....... .. . ..... . ...... . . . . ..... . ................................ ........ . .. .. .. . . . . . . .... . . . . .... .. . . ........ . . . . . . . . . . . . . . . . . . ...... . .. . . ... .. . ....... . ... . ............. . . ... . . . . ................................................................................ . . . . ... . . .... ... . .. . ......... ...... . ... .. . .. ... .. ........... . . .. ... . . . .. . ... . .................... . . .. . ..... . ..................... . ........ ........... .. ..................... . . . ...... . . . .. .... ...... .. . . .... .. . . . . . ................................................ ............ . . . .... . . . . ..... .. .
lowQualScore : 0 5 8888 0 9999999999 0 888 2 44 777 33333 7 8 8 8 2 00000000000000 5 000 0 22 33 1 7 7 4 7 7 4 7 555 3 7 333 88888888 7 7 88 7 7 7 5555 7 7 22 0 555 22 7 7 6666666 99 7 66666 7 000000 7 4 7 7 11111 0 77777777777777777777777777777777 99999999 7 22 33 22 7 8 8 0 0 0 0000 0 8 0 0 0000 00 0 8 00000000 8 8 0 8 7 7 7 7 0 0 0 0 4 0 2 0 0 0 444444 1 99 0 0 888 22 0 1111111 1 888 0 2222222222222 9 0 999 4 8 0 0 22222222222222222222222222222222222222222222222222222222222222222222222222222222 0 5 5 0 222 0 6 6666 000 0 66 0 000000000 000000 8 888 00 0 00 000 22 22222222222 0 8 88 666 0 2 0 00 0 444 2 88888888888888888888 0 0 22 8 00000 0 333333333333333333333 7 22222222 00000000000 22 000000000000000000000 7 7 7 777777 7 7 0 88 5555 000000 55 0 0 8888 99 7 3 7 7 7 555555555555555555555555555555555555555555555555 888888888888 7 3 3 6666 6 0 5 8 00000 33 0
consensus : GCAGTT-GGCAGAA---CGGCATTGGGC-C--GA---C--ATT-GG--CCGAC-GTTG-A-TTAT----CACTGTGGG-TCATTGACATCGTTCCAACNNNNNNNNNNNNNNGAATTATCTGACTGTGGGATTCAATGTTGAC-ATTGGG-CCAACG-ACATTGGACC-GA-CGTTGTAA-TTATC-ACTGTGGGA-TCATTGAC-AT-GTTTCCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTCAGT-GTT-GGTTGGA-TTGACA-TCGGT-CCAATGT-TTGGACCGACATTGTT-GAA--C-AAT-G-TTGGGACATAGATCAT-TG-TAC-----CCAA--TGTT-G--AT-TCA-ATATC--T-A-TA-GAGTTCT-A-CTGCTC-----ACTGTT-GGCACAAACACACAGAACCAACG---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAGTAAATGGCTA--TA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAGGAACAATTAAATTCAAACTTT-AACTA----TT-NAGTTTACA-ACTTCAACAGT--------TTAAAAACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGGACTA-TGGATGCCAGCAGACCGC---ATAA---TTATGTAA-GTA--G--G--GCC-NTATA-TAT--NTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTCNCCTGTATAGTTATGNTCAT-CGGGTATCC-ATTTA-TTATT-GTTTATA-TCATCCG-CCCTTAA---------TAAA------TATTA--TTTGATA--A-TT--TA---TTGCTAA-------TT-CA-TTTTG-TTTTCAGTCCTGGGAGTT-TCG-CAG--A-AAAAGACTAT-TGCTCGTT---TA-GGACTA-AG--C--TAC-G-GATTCCAG-----A-GTTAT-G-TCG--C-ATGC----GA-CA--------GGGAAG--A--------GG--GGGGGGGGT---A---GAA----AGA----AGAAGAC-AGCGAGAG-AGGTG-GAAAAGAACC----CAAACA-GAGGAC-ACCGATGT-G-AATTTCAAACT--ATTCAA--ATA-AATTTGATGATT-GACGT-TT-TTGCA---ACA--TT-GGTCCA-GCG-TT-GGCACAA-G--TG-TCAAAT----AGC-T---------------------G-G-CATTGGGC----C----TACATTGGA-CCGACGTTG-AATTATCA-CTGTTGGATNACTTGGCGTTGGGCA-A-CTACATTGG-GCCAACAGTGGGAGTANTATTGTA
Reference ( family-744 ) : GCAGTT-GGCAGAA---CGGCATTGGGC-C--GA---C--ATT-GA--CCGAC-GTTG-A-TTAT----CACTGTGGG-TCATTGACATCGTTCCAACNNNNNNNNNNNNNNGAATTATCTGACTGTGGGATTCAATGTTGAC-ATTGGG-CCAACG-ACATTGGACC-GA-CGTTGTAA-TTATC-ACTGTGGGA-TCATTGAC-AT-GTTTCCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTCAGT-GTT-GGTTGGA-TTGACA-TCGGT-CCAATGT-TTGGACCGACATTGTT-GAA--C-AAT-G-TTGGGACATAGATCAT-TG-TAC-----CCAA--TGTT-G--AT-TCA-ATATC--T-A-TA-GAGTTCT-A-CTGCTC-----ACTGTT-GGCACAAACACACAGAACCAACG---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAGTAAATGGCTA--TA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAGGAACAATTAAATTCAAACTTT-AACTA----TT-NAGTTTACA-ACTTCAACAGT--------TTAAAAACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGGACTA-TGGATGCCAGCAGACCGC---ATAA---TTATGTAA-GTA--G--G--GCC-NTATA-TAT--NTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTCNCCTGTATAGTTATGNTCAT-CGGGTATCC-ATTTA-TTATT-GTTTATA-TCATCCG-CCCTTAA---------TAAA------TATTA--TTTGATA--A-TT--TA---TTGCTAA-------TT-CA-TTTTG-TTTTCAGTCCTGGGAGTT-TCG-CAG--A-AAAAGACTAT-TGCTCGTT---TA-GGACTA-AG--C--TAC-G-GATTCCAG-----A-GTTAT-G-TCG--C-ATGC----GA-CA--------GGGAAG--A--------GG--GGGGGGGGT---A---GAA----AGA----AGAAGAC-AGCGAGAG-AGGTG-GAAAAGAACC----CAAACA-GAGGAC-ACCGATGT-G-AATTTCAAACT--ATTCAA--ATA-AATTTGATGATT-GACGT-TT-TTGCA---ACA--TT-GGTCCA-GCG-TT-GGCACAA-G--TG-TCAAAT----AGC-T---------------------G-G-CATTGGGC----C----TACATTGGA-CCGACGTTG-AATTATNA-CTGTTGGATAACTCGGCGTTGGGCANAACTACATTGGNGCCAACAGTGGGAGTANTATTGTA
gi|1 : GCAGTT-GGCAGAA---CGGCATTGGGC-C--AA---C--ATTCGA--CCGAC-ATTGCN-NNNN----NNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTATCTGACTGTGGGATTCAATGTGGACGATTGCTTCCAATG-ACATCG-ACC-GAATGTTGTAAGTTATCTACTGTGGGACTCATTGAC-AT-GTTTTCAAAGT-CGGACCGA-CGTTGGAT-AT--TGGGTGTCAAGTCGTTTGGTTGGAGCTGACAATCGGT-CCAATGTATTGGACCGCTAT-GTT-GAA--C-AAT-GGTTGGGACATAGATCATGTGATAT-----CGAACTTGTT-G--AT-TCA-ATATC--T-A-TA-GAGATCT-A-CTGCTC-----ACTGTT-GGTACAAACACACAAAACCAGCA---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--TAAGTAAATGACTA--TA-CACAATTAATTTTTAAATCTGTT-CA-ATATTTT-GTGCATCAAGGATGGA----AAGGAACAAATAAATTCAAACTTT-AACAA----TT-CAGTTTACA-ACTTCAACAGT--------TCAAAGACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTT-ATG---AGTAGGACTA-TGGATGCCATCAGACCGC---ATAAACTTTATGTAA-GTA--G--G--GCC-CTATA-TAT--CTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGCCTATATAGTTATGTTC---TGGGTATCC-ATTTA-TTATT-GATTATA-TGAATCG-GCCTTAA---------TAAA------TATTA--TTTGATA--ATTT--TA---TTTCTAA-------TT-CA-TTTTGTTTTTCAGTCCTGGGAGTT-TCG-TAG--A-AAAAGA-TAT-TGCTCGTT---TA-AGACTA-AG--CAAAACAG-GATTCCAG-----A-GTT-T-GATTG--C-ATGC----GA-CA--------GGGAAG--A--------GG--GGGGGGAGC---A---GA-------A----AGAAGAC-CGCGAGAG-AGGTG-GAAAAGAACCATTGCAAACA-GAGGAC-ACAGATGT-G-ACTTTCAAACT--ATTCAAT-CTA-AATTTGATGATT-GACGT-TTATTACA---ACA--TT-GGT-CA-GCA-TT-GGCCCAA-G--TG-TCAAAT----AGC-T---------------------GTG-CATTGGGC----C----TACATTGGG-CCAAC---A-AATTAAAAGATGTTGAATAACTTGGCGTTGGACACA--TACATTGGCGCCAACAATAGGAGTATTATTGTA
gi|10 : ---ACA--TT-GGCCCA-ACG-TT-GACCCAT-GGTTG-GTAAATCGGCAAC-TTATC-----------------G-C-CGTTGG-CAGAAC----GGCATTGGA-CCGACATTGTAATTATCA-CTGTGGGATCA-TTGACATTGAGCAAAATTACATTG--GCCAAataaca
gi|10 : ccagatagcaagcttGCCGTT-GGCAGAA---CGGCATTGGAC-C--GA---C--ATT-G-----------TA-A-TTAT----CACTGTGGGATCATTGACATTGacataattttccaacatcggaccaaggagggagatatgtgatacatactaaaatgaacaatgtgttaaaagtaatcattgtc
gi|10 : ccagatagcaagcttacattggcccaacgttgacccatggttggtaaatcggcaacttatcAACG-GCATTGGACC-GA-CATTGTAA-TTATC-ACTGTGGGA-TCATTGAC-AT-agcaaaattacattggccaaacataattttccaacatcggaccaaggagggagatatgtgatacatactaaaatgaacaatgtgttaaaagtaatcattgtc
gi|11 : ccagatagcaagcttacattggcccaacgttgacccatggttggtaaatcggcaacttatcgccgttggcagACTGTGGGAT-CA---TTGAT-ATTGGG-CCAAC----ATTGGACC-GA-CATTGTAA-TTATC-ACTGTGGGA-TCATTGACAAT-G-TTCCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTCAGT-GTT-GG-TGGA-TTGGCA-TCGGT-CCAATG--TTGGACCGACATTGTT-GAA--C-------------C----ATCAT-TG-TA------CCAA--TGTT-G--AT-TCA-ATATT--T-ATTA-GAGTTCT-A-TTGCTC-----ACTGTT-GGCACAAACACAtgagcaaaattacattggccaaacataattttccaacatcggaccaaggagggagatatgtgatacatactaaaatgaacaatgtgttaaaagtaatcattgtc
gi|12 : ataatcC----GA-CA--------GGAAGG--G--------GG--GGGGGGAGT---AAGAGAAC---AGA----AGAAGAC-AGCGAGAG-AGGTGCGAAAAA---C----GAAACA-GAGGACAACCGATGT-GAAATTTCAAACT--A-TCAAAGATA-AATTTGATGATT--ACGT-TT-CTGCA---ACA--TT-GGTCCA-ACGATT-GGCACAATG--TT-TC-AAT----A-C-T---------------------G-G-CATTGGAC----C----AATATTGAA---AATGTTG-AAT
gi|13 : tatgcaCA-C-ATA-AGTTT-CT-GCA-CTC-TGACTTG-AAAGTCATCCCCGACCAACAG--ACTGTGATG-TCC-CTGTCGCAT-CACTACTATAGGATAGCT-TCT-TTTGA-G-CTTTTT-CTT---AGTAG-------------CAGCAGA---C---A-AA---TTAT-TAAGGTATTGATG--ATT-GT-TA-TAT--ATTTTTTAATTTGATAAT-CTC-ATT
gi|14 : A---C--ATT-GG--CCAAC-GTTG-G-TTAT--------GTGGG-TAATTtttaattaaaat
gi|14 : ccagatagcaagcttGCAGTTTGGCAAAAAGACGGCAATGGGCGC--GAGACT--ATT-GGGTCCGAC-GTTG-AATTAT----CACTGTGGG-TCATTGACATTGTT-CAACccccggcccatcatattcgggcagtttggcaaaaagacggcaatgggcgcgagactattgggtccgacgttgaattatcactgtgggtcattgacattgttcaacc
gi|15 : ccagatagcaagcttacattggccaacgttggttatgtgggtaattccccggcccatcatattcggTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCC--------------TGTGATG-TCA-TTGTC----------------------TCTCTGTCTAATA-TTTTTTTCTG---AGTAGGCCTAATGGATGCGAGCAGA--G----ATAA---TTTTGTAA-GTA------------TTG--------ATTTTTAAATTTGATATT-CTC-ATCAc
gi|16 : GCAGTT-G-CAGA----CGGCATTGGAC-CAAAA---CAAATT-GA--CCTACAATTG---TTATATCCCACTGGTAG-TCG-TAACATCA-TCCAAttctaaaattaa
gi|17 : gcaagcatcttacagtgtggcccaacgatggtatatggtatggtaatatccaggcaacagtatcTCAT-NN-NNN-----NNNN--NNNN-N--NN-NNN-NNNNN--N-N-NN-NAGTTCT-A-CTGCTC-----ACTGTT-GGCACAA--ACACAGAACCAACGTTGAAGAGAT----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTG
gi|2 : gCA-ACAT-GGACCCGA-CATTGTAA-TTATC-AC-GTGGGA-TC-TCGAC-ATTGTTTCCAACATACGGACCGA-CGTTGT-TTAT--T-----TTCAGT-GTT-GGT--GA-TGGACA--CGGT-CCAATGT-T-GGACCTA-ATTGTT-GAATCC-AAT-G-TTGGGACATAG-TCAT-TG-TAC-----CAAA--TGTT-G--ATATCA-AT------------GAGCTAT-ATCTGCTCGAGCAACTGTTTGGCACAAACACACAGAGCCAACG---------TTAAGGAGGTAAATA--------AAC-AACA---TTTTAAAGTAATTTTGATATATAATGAAGCCAAGTAAATGGCTA--TAACACAATTA-TTTTTAAATCTATTTCA-ATATTTTTGTGCATCAAAGATGGA----AAGAAACAATTAAATTCAAACTTT-AACTA----TTCCAGTTTACA-ACTTC-ACAGG--------TTTAAAACAATTGTAC--GATAGGCCTTCTCAAACTTGCCA-CAATA-ACTTTTCTGGCA-CTCGTGACT-GAAAAGTCTTCCCCG-CCAAGAAGAACTGTGATGTTCA-CTGTCGCAT-CACTC------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTA-GACTA-TGGATGCCAGCAGACC-CTCAATAA---TTATGTAA-GTA-----G--GCC-CTATA-TATAATTTTTTTAATTTGATATTCCTCGATTAGCGATATTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTCTCCTGT-TAGTT-TGATCATGCGGGTATCCAATGTA---ATT--TTTATATTCCTCGGCCCCTTAA---------TAAATTACTGTATTAATTTTGATATGA-TTTCTACGTTCGCTAGTTAGATCTT-CATTTTTG-TTTCAAGTCCTGGGAGTTCTCGCCAG--ACAAAAGACTAT-GCCTCGTT---TA-GT-CTACAG--C--TAC-G-GATT-CAG-----ATGTTATCA-TCGGAC-AAGG----GA-AAGTAAAGGGGGGAAGGAG--------GG--GGGGGGGGTAAGA---GAA----ACAG---AGAAGAC-AGCGAGA--AGGTG-G-AAAGAACC----C-AACA-GAGGAC-ACCGATGT-G--ATTTCACACT--AATCAA--ATATAATTTGATGATTGGACGTATT-TTGC----ACATTTT-GGT-CA-GCA-TT-GGCACAA----TGTTCAAGT----AAC-T---------------------G-GCCATTGGG-----C----TACATTGGGCCCAACATTA-AA---------ATTTGATAACTGCGTGTTGGGC----CTACATTGGGGCCAACAGTGAGAGTAATATTGTA
gi|22 : c-A-TTAT----CACTGTGGG-TCATTGACATTGTTCggcaca
gi|3 : aC-----AATGTT-GGTACAAACACACAAAACCAAGT---------T----------AA-AGAGGTGGAAAC-A-TA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAATAAAGGACTAGATA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAAGAATAATTAAACTCAAACTTT-AACTA----CT-GGGTTTACA-ATTACAGCAATATGAAAAATTAAAA-CAATT-TACATGGCAGGCCTTCTC-AACTTGCCT-C-TTA-ACTTCTCT-GCA-CTCGTGACT-G-AAAGTCATCCTCG-CCAAAAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-ATTATT-CTG---AGTAGGCCTA-TTGACACCAGCAGA---C---ATAA---TTATGTAA----------------ATATA-TAT--G-ATTTTGGTTTGATATT-CTC-ATTaa
gi|3 : -ATTTA-TT-TT-GTTTATA-TCATCCG-CCCTTGA---------TAAA------T-TTA--TTTGATA--A-TT--TA---TTG-TAA--------T-AA-TTTTG-TTTTCAG---AAGGAGTT-T-G-CAGAAA-AAAAGACTA--TACTC-----------------G--C--TAC-G-GATTCC-G-----A-GT--T-G-TTG--C-ATCG----GA-CA--------GGGAAG--A--------AG--GAGGGGGGTAAGA---GAAC---AGA----AGAAGAC-AGCGAGAGAAAGTG-GAAGAGAA-T----CAAACA-GAGGAC-ACCGATGTGG-AATTTCAAACtttctaaaattaatataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcttatttattttgtttatatcatccgcccttgataaatttatttgataatttattgtaataattttgttttcagaaggagtttgcagaaaaaaagactatactcgctacggattccgagttgttgcatcggacagggaagaaggaggggggtaagagaacagaagaagacagcgagagaaagtggaagagaatcaaacagaggacaccgatgtggaatttcaaacaccatgaatacaata
gi|4 : caatgttggtacaaacacacaaaaccaagttaaagaggtggaaacatattttaaagtattttgatataatgaacaaataaaggactagatacacaattaatttttaaatctattcaatattttgtgcatcaaagatggaaaagaataattaaactcaaactttaactactgggtttacaattacagcaatatgaaaaattaaaacaatttacatggcaggccttctcaacttgcctcttaacttctctgcactcgtgactgaaagtcatcctcgccaaaaagaactgtgatgtcactgtcgcatcactagatctctctgtctgatgattattctgagtaggcctattgacaccagcagacataattatgtaaatatatatgattttggtttgatattctcatttttctaaaattaatataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcttGCA---ACA--T--AGTC---GCA-TT-GGCA---------------------GCAT---------------------G-A-CATTGGGC----C-----ACATTGGA-CCGACGTTGTAATTATCA-CTGTGGGAaccatgaatacaata
gi|4 : cagatagcagagcttacaatggcccacgttgggtattggttggtaaatcgaTGAC-ATTGGG-CCA-----CATTGGACC-GA-CGTTGTAA-TTATC-ACTGTGGGACTCATTGAC-AT--TGTCCAACATTCGGACCGAACGTTGT-G-ATGAT-----TTCAGT-GTT-GGT-GGA-TTGACA-TCGGTGCCAATGT-T-GGACCGATATTGTTTGAA--CCAATTG-TTGGGACATAG-TCAT-TG-T-------CCAA--TGTTTGCCAT-TCACATATTCTT-A-TAAGAGTTCTTA-CTGCTCGAGC-ACTGTT-GGAACAAACACACAGAA-----G---------T----------AA-A--------AAC-A-CAACATTTTAAAGTA-TTT-GATATG--ATGAA--CAAGTAAATGGCTA--TA-CACAAT-GATTTTTAAATCTATT-CATATATTTT--TGCATTAAAAATGGA----ATGGAACAATTAATTCCTAACTTTTAACTAGGCCTA-TAGTTTACAGACTTCAAGAGT--------T-AAAAATAATT-TACAT-TTAGGC-TTCTC-AACTTGCCAAC-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGAAT-TCAGCTGTCGCATTCACTA------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGAACTA-TGGATGCCAGCAGACCGCA--ATAA---TTATGTAA-GTT--G--G--CCC-CAATATTGT--GTTTTTTAATTTGATA-T-CTC-ACTAG-----------GCctcattgacattgtccaacattcggaccgaacgttgtgatgatttcagtgttggtggattgacatcggtgccaatgttggaccgatattgtttgaaccaattgttgggacatagtcattgtccaatgtttgccattcacatattcttataagagttcttactgctcgagcactgttggaacaaacacacagaagtaaaaacacaacattttaaagtatttgatatgatgaacaagtaaatggctatacacaatgatttttaaatctattcatatatttttgcattaaaaatggaatggaacaattaattcctaacttttaactaggcctatagtttacagacttcaagagttaaaaataatttacatttaggcttctcaacttgccaacataacttttctgcactcgtgactgaaagtcatccccgccaagaagaactgtgaattcagctgtcgcattcactagatctctctgtctgatgctttttcttagtagaactatggatgccagcagaccgcaataattatgtaagttggccccaatattgtgttttttaatttgatatctcactaggcttattttaaataatt
gi|5 : cagatagcagagcttacaatggcccacgttgggtattggttggtaaatcgagcaacatagtcgcattggcagcaTCT-GCA-CTTTTAACT-G-AAAGTCATTCTCA-CTCAAAAGAACTGTGATG-TCA-CTGCCACAT-CACTA------CAT--ATCTCTGTCTGATGTTTTTTT-CTTCTAAGTATACCTA-TGGCTACAAGAAG----------AA---GTATGTAA-GTATTG--A--ATTGATGCA-TAT--ATTTTT--ATTTGATAAT-TAC-ATCAG-----------ttattttaaataatt
gi|5 : CAT-CGGGCATCC-ATTTATTTATTCGTTTTTA-TCATCCG-TCTTTAAGGTTTTTATTAAC------TATCA--TTTTATT--A-TT--TA---TTGTCA---------T-CA-ATTTG--TTTCAG--ATGG--ATT-TTG-CAG--A-AATTGACTATATGATCATTAGCTACGGACTT-AGATG--TAT-GTAATATTAGTTAATA-GTGGT-T-TCG--CTATGCATCGAA-CA--------GGGAAA--AC-------GGTTGGCTGGGGC---A---GAA----GGATAAGAGAAGAC-AGCGAGAG-AAATG-GAAGAGAA-C----CAAACA-GAAGAA-ACCGActaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatacatcgggcatccatttatttattcgtttttatcatccgtctttaaggtttttattaactatcattttattatttattgtcatcaatttgtttcagatggattttgcagaaattgactatatgatcattagctacggacttagatgtatgtaatattagttaatagtggtttcgctatgcatcgaacagggaaaacggttggctggggcagaaggataagagaagacagcgagagaaatggaagagaaccaaacagaagaaaccgaggattaacactt
gi|6 : tctgcacttttaactgaaagtcattctcactcaaaagaactgtgatgtcactgccacatcactacatatctctgtctgatgtttttttcttctaagtatacctatggctacaagaagaagtatgtaagtattgaattgatgcatatatttttatttgataattacatcagctaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntata---ACA--TT-GGCCCA-ATG-TT-GGTATAT-GGTTG-GTAAATC---GGC-TACATATTGCAGTTGGCAGAACG-G-CATTGGAC----CAACATATATTGGA-CCGACACTG-AATTATCA-CTGTTGGATCACT-GACATTGggattaacactt
gi|6 : gatagcaagcttGGC-ATTGGA-CCAACATATATTGGACC-GA-CACTG-AA-TTATC-ACTGTTGGA-TCACTGAC-AT-TGTTCCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTAAGT-GTT-GGT-GGA-TTGACA-TCGGT-CCAATGT-T-GGACCGACATTGTT-GAA--CTAAT-G-TTGGGACATA-ATCAT-TG-TACATGTACCAA--TGTT-G--GG-TCG-ATATC--TTA-TA-GATCTC--A-CTACTC-----GCTGTT-GGCACAAACACACAGAACCCACG---------T----------TA-A--------AG-----A---TTTTAAAGTA-TTTTGATATA--ATAAA--CAAATAAATGGCTA--TA-AACAATTAAGTTTTAAATCTATT-CA-GTATTTT-GTGCATCAAAGTTGGAATTTAAAGAGCAATTAAATTC-AACT------------TT-GAGTTTACA-ATTTCAACATT--------TTAAAAACGATT-TACATGTTAGGCCTTCTC-TACttccaacatcggaccgacgttgttattttaagtgttggtggattgacatcggtccaatgttggaccgacattgttgaactaatgttgggacataatcattgtacatgtaccaatgttgggtcgatatcttatagatctcactactcgctgttggcacaaacacacagaacccacgttaaagattttaaagtattttgatataataaacaaataaatggctataaacaattaagttttaaatctattcagtattttgtgcatcaaagttggaatttaaagagcaattaaattcaactttgagtttacaatttcaacattttaaaaacgatttacatgttaggccttctctac
gi|7 : gatagcaagcttacattggcccaatgttggtatatggttggtaaatcggctacatattgcagttggcagaacGGC-AGTGG----AACA-ACATTGGATC-GA-CATTGTAA-TTATC-ACTGTTGGA-TCATTGAC-AT-TGTTCCAACAC-CGGACCGA-TGTTCA-T-AT--T-----TTCAGT-GTT-GG-TGGA-TTGACA-TCGGT-CCATTA--TTGGACCGACATTATT-GAA--CAAAT-G-TTGGAAAATA-ATCAT-TG-T-T-----TCAT--TGTT-G--GG-TCC-ATATC--T---TA-------T-A-CTGCTC-----ACTGTT-GGCACAGACACACAAAACCAACA---------T----------TA-A--------AGCGG-C---------GAGTA-TTTTAATATA--AGGAATTTAAATAAATGGCTA--TA-C
gi|8 : ttatattggccctatgttggtatatatgactggtaaatcggctgcagagcgcagttggcagaacAT-CGGGTATCC-TCGTA-TAATT-GGTTATA-TC--TCG-CCCTTAA---------TAAA------TATT---TTTGATA--A-TT--TA---TT--TAA-------TGACA-TTT-G-TTTGCAGTC-TGGGAGTT-GCG-CAG--A-AAAAGACTAT--GCTCGTT---TA-G-ACTA--G--C--TAC-G-GAT--CAG-----A-GTTAT-G------C-AT-C----GAGCA--------GGGAAG--AAGGGGGAAGG--GGGGGGGGT---AA--GAAGAGCAGA----AGAAGACTAGCGAGAG-AGGTG-GAAAAGAACC----AAAGCAGGAGGAC-ACCGATGT-G-AATTC--AACTAAATACAA--A-A-AATTTGATGATT-GATGT-TT-TTGCAACCACA--TTAGGTCCAGGCA-TTCGGCACAA----TG-T
gi|9 : tTTAGGCCTTCTC-AACTTGCCA-C-ATACACTTTTCT-GCAACTCGTG-CT-G-AAAGTC-TTCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------G-T--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGGACTA-TGGATGCCAGCAGACCGC---ATAA---TTATGTAA-GTA--G--GAAGCC-GCCTA-TAT--TTTTTTTTATTTGATA-T-CTCTATTAG-----------GCCt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TCCCAGGTAGCAAGGGCACATTGGCCCAATGTTGGTTGTTTGGTTG
Unaligned ( gi|19 ): GATAACAAGCTTACATTAGCCCAATGTTGGGCCACTGTT
Unaligned ( gi|20 ): CCAGATAGCAATCTTACATTGGCCCAACGTTGG
Unaligned ( gi|21 ): TACTTAAGGGGATGATTAATAGTACGTCACGT
Unaligned ( gi|23 ): TTAAGGGGATGATTAATAGTACGTCACGT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111
lowQualScore : 1 3333 333333333333 1 11 1 222 11111 11111111111111 11 444444 1111 11 1 222 1 11111111 22 2222 2 11 2222222 111111 22222 44444444444444444444444444444444 11111111 11 1111 1111 22222222 111111 1 3333333 4444444444444 1 77777777777777777777777777777777777777777777777777777777777777777777777777777777 1 1 111 1111 333333333 222222 111 11 11 111 11 33333333333 222 11 111 33333333333333333333 11 22222 333333333333333333333 22222222 33333333333 444444444444444444444 111111 1111 222222 11 1 1 1111 000000000000000000000000000000000000000000000000 222222222222 1 11 444444 1
lowQualScore : 3 6 0000 888888888888 0 33 0 0 111 99999 2 0 5 5 44444444444444 88 222222 6 2222 66 0 5 5 6 5 5 1 0 1 1 5 111 1 5 888 66666666 6 6 22 6 6 6 0000 3 6 99 0 777 88 5 5 7777777 77 5 99999 5 888888 5 2 5 5 33333 5 55555555555555555555555555555555 11111111 5 99 88 99 6 0 0 8 8 8 7777 6 0 8 1 7777 99 8 0 99999999 3 0 8 0 6 6 6 6 5 5 5 5 0 5 0 5 5 5 444444 0 66 0 888 33 5 3333333 0 888 5 1111111111111 3 5 777 0 9 5 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333 1 5 5 1 000 8 0 0000 999 8 66 8 222222222 333333 0 111 11 8 11 444 33 99999999999 8 0 88 000 8 3 8 11 8 444 3 99999999999999999999 8 8 44 0 00000 8 000000000000000000000 6 44444444 66666666666 99 888888888888888888888 6 6 6 777777 6 6 8 88 4444 555555 22 0 0 0000 77 5 4 5 5 5 000000000000000000000000000000000000000000000000 777777777777 6 6 3 1 8 0 8 1 00 66 000000 6 99 8 3 3 1
lowQualScore : . . .... ............ . .. . . ... ..... . . . . .............. .. ...... . .... .. . . . . . . . . . . . ... . . ... ........ . . .. . . . .... . . .. . ... .. . . ....... .. . ..... . ...... . . . . ..... . ................................ ........ . .. .. .. . . . . . . .... . . . . .... .. . . ........ . . . . . . . . . . . . . . . . . . ...... . .. . ... .. . ....... . ... . ............. . . ... . . . . ................................................................................ . . . . ... . . .... ... . .. . ......... ...... . ... .. . .. ... .. ........... . . .. ... . . . .. . ... . .................... . . .. . ..... . ..................... . ........ ........... .. ..................... . . . ...... . . . .. .... ...... .. . . .... .. . . . . . ................................................ ............ . . . . . . . . .. .. ...... . .. . . . .
lowQualScore : 3 7 7777 666666666666 0 88 2 0 888 88888 8 8 8 2 00000000000000 00 000000 7 7777 99 1 7 7 3 7 7 4 7 4 4 7 999 4 7 333 88888888 7 7 88 7 7 7 5555 7 7 22 0 555 22 7 7 6666666 99 7 66666 7 000000 7 4 7 7 11111 0 77777777777777777777777777777777 99999999 7 22 33 22 7 8 8 0 0 0 0000 0 8 0 0 0000 00 0 8 00000000 8 8 0 8 7 7 7 7 0 0 0 0 4 0 2 0 0 0 444444 1 99 0 888 22 0 1111111 1 888 0 2222222222222 9 0 999 4 8 0 0 22222222222222222222222222222222222222222222222222222222222222222222222222222222 0 5 5 0 222 0 6 6666 000 0 66 0 000000000 000000 8 888 00 0 00 000 22 22222222222 0 8 88 666 0 2 0 00 0 444 2 88888888888888888888 0 0 22 8 00000 0 333333333333333333333 7 22222222 00000000000 22 000000000000000000000 7 7 7 777777 7 7 0 88 5555 000000 55 0 0 8888 99 7 3 7 7 7 555555555555555555555555555555555555555555555555 888888888888 7 3 3 0 0 6 0 0 88 44 888888 0 44 0 7 7 0
consensus : GCAGTT-GGCAGAA---CGGCATTGGGC-C--GA---C--ATT-GG--CCGAC-GTTG-A-TTAT----CACTGTGGGTCATTGACATCGTTCCAACNNNNNNNNNNNNNNGAATTATCTGACTGTGGGAT-CA---TTGAC-ATTGGG-C-CAACG-ACATTGGACC-GA-CGTTGTAA-TTATC-ACTGTGGGA-TCATTGAC-AT-GTTTCCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTCAGT-GTT-GGTTGGA-TTGACA-TCGGT-CCAATGT-TTGGACCGACATTGTT-GAA--C-AAT-G-TTGGGACATAGATCAT-TG-TAC-----CCAA--TGTT-G--AT-TCA-ATATC--T-A-TA-GAGTTCT-A-CTGCTC-----ACTGTT-GGCACAAACACACAGAACCAACG---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAGTAAATGGCTA--TA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAGGAACAATTAAATTCAAACTTT-AACTA----TT-NAGTTTACA-ACTTCAACAGT--------TTAAAAACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTTCTT---AGTAGGACT-ATGGATGCCAGCAGACCGC---ATAA---TTATGTAA-GTA--G--G--GCC-NTATA-TAT--NTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTCNCCTGTATAGTTATGNTCAT-CGGGTATCC-ATTTA-TTATT-GTTTATA-TCATCCG-CCCTTAA---------TAAA------TATTA--TTTGATA--A-TT--TA---TTGCTAA-------TT-CA-TTTTG-TTTTCAGTCCTGGGAGTT-TCG-CAG--A-AAAAGACTAT-TGCTCGTT---TA-GGACTA-AG--C--TAC-G-GATTCCAG-----A-GTTAT-G-TCG--C-ATGC----GA-CA--------GGGAAG--A--------GG--GGGGGGGGT---A---GAA----AGA----AGAAGAC-AGCGAGAG-AGGTG-GAAAAGAACC----CAAACA-GAGGAC-ACCGATGT-G-AATTTCAAACT--ATTCAA--ATA-AATTTGATGATT-GACGT-TT-TTGCA---ACA--TT-GGTCCA-GCG-TT-GGCACAA-G--TG-TCAAAT----AGC-T---------------------G-G-CATTGGGC----C----TACATTGGA-CCGACGTTG-AATTATCA-CTGTTGGA-TCACTTGACGTTGNNC--AA-TACATT-GG-GCC-AACANTGNGAGTANTATTGTA
Reference ( family-744 ) : GCAGTT-GGCAGAA---CGGCATTGGGC-C--GA---C--ATT-GG--CCGAC-GTTG-A-TTAT----CACTGTGGGTCATTGACATCGTTCCAACNNNNNNNNNNNNNNGAATTATCTGACTGTGGGATTCAATGTTGAC-ATTGGG-C-CAACG-ACATTGGACC-GA-CGTTGTAA-TTATC-ACTGTGGGA-TCATTGAC-AT-GTTTCCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTCAGT-GTT-GGTTGGA-TTGACA-TCGGT-CCAATGT-TTGGACCGACATTGTT-GAA--C-AAT-G-TTGGGACATAGATCAT-TG-TAC-----CCAA--TGTT-G--AT-TCA-ATATC--T-A-TA-GAGTTCT-A-CTGCTC-----ACTGTT-GGCACAAACACACAGAACCAACG---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAGTAAATGGCTA--TA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAGGAACAATTAAATTCAAACTTT-AACTA----TT-NAGTTTACA-ACTTCAACAGT--------TTAAAAACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTTCTT---AGTAGGACT-ATGGATGCCAGCAGACCGC---ATAA---TTATGTAA-GTA--G--G--GCC-NTATA-TAT--NTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTCNCCTGTATAGTTATGNTCAT-CGGGTATCC-ATTTA-TTATT-GTTTATA-TCATCCG-CCCTTAA---------TAAA------TATTA--TTTGATA--A-TT--TA---TTGCTAA-------TT-CA-TTTTG-TTTTCAGTCCTGGGAGTT-TCG-CAG--A-AAAAGACTAT-TGCTCGTT---TA-GGACTA-AG--C--TAC-G-GATTCCAG-----A-GTTAT-G-TCG--C-ATGC----GA-CA--------GGGAAG--A--------GG--GGGGGGGGT---A---GAA----AGA----AGAAGAC-AGCGAGAG-AGGTG-GAAAAGAACC----CAAACA-GAGGAC-ACCGATGT-G-AATTTCAAACT--ATTCAA--ATA-AATTTGATGATT-GACGT-TT-TTGCA---ACA--TT-GGTCCA-GCG-TT-GGCACAA-G--TG-TCAAAT----AGC-T---------------------G-G-CATTGGGC----C----TACATTGGA-CCGACGTTG-AATTATCA-CTGTTGGA-TNACTTGGCGTTGGGC--AACTACATT-GG-GCC-AACAGTGGGAGTANTATTGTA
gi|1 : GCAGTT-GGCAGAA---CGGCATTGGGC-C--AA---C--ATTCGA--CCGAC-ATTGCN-NNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTATCTGACTGTGGGATTCAATGTGGACGATTGCTTC-CAATG-ACATCG-ACC-GAATGTTGTAAGTTATCTACTGTGGGACTCATTGAC-AT-GTTTTCAAAGT-CGGACCGA-CGTTGGAT-AT--TGGGTGTCAAGTCGTTTGGTTGGAGCTGACAATCGGT-CCAATGTATTGGACCGCTAT-GTT-GAA--C-AAT-GGTTGGGACATAGATCATGTGATAT-----CGAACTTGTT-G--AT-TCA-ATATC--T-A-TA-GAGATCT-A-CTGCTC-----ACTGTT-GGTACAAACACACAAAACCAGCA---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--TAAGTAAATGACTA--TA-CACAATTAATTTTTAAATCTGTT-CA-ATATTTT-GTGCATCAAGGATGGA----AAGGAACAAATAAATTCAAACTTT-AACAA----TT-CAGTTTACA-ACTTCAACAGT--------TCAAAGACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTTATG---AGTAGGACT-ATGGATGCCATCAGACCGC---ATAAACTTTATGTAA-GTA--G--G--GCC-CTATA-TAT--CTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGCCTATATAGTTATGTTC---TGGGTATCC-ATTTA-TTATT-GATTATA-TGAATCG-GCCTTAA---------TAAA------TATTA--TTTGATA--ATTT--TA---TTTCTAA-------TT-CA-TTTTGTTTTTCAGTCCTGGGAGTT-TCG-TAG--A-AAAAGA-TAT-TGCTCGTT---TA-AGACTA-AG--CAAAACAG-GATTCCAG-----A-GTT-T-GATTG--C-ATGC----GA-CA--------GGGAAG--A--------GG--GGGGGGAGC---A---GA-------A----AGAAGAC-CGCGAGAG-AGGTG-GAAAAGAACCATTGCAAACA-GAGGAC-ACAGATGT-G-ACTTTCAAACT--ATTCAAT-CTA-AATTTGATGATT-GACGT-TTATTACA---ACA--TT-GGT-CA-GCA-TT-GGCCCAA-G--TG-TCAAAT----AGC-T---------------------GTG-CATTGGGC----C----TACATTGGG-CCAAC---A-AATTAAAAGATGTTGAA-TAACTTGGCGTTGGAC--ACATACATT-GGCGCC-AACAATAGGAGTATTATTGTA
gi|10 : ---ACA--TT-GGCCCA-ACG-TT-GACCCAT-GGTTG-GTAAATCGGCAAC-TTATC-----------------G-C-CGTTGG-CAGAAC----GGCATTGGA-CCGACATTGTAATTATCA-CTGTGGGA-TCA-TTGACATTGAGCAAAATTACATT-GG-CCA-AACAataaca
gi|10 : ccagatagcaagcttAATTATC--ACTGTGGGAT-CA---TTGAC-ATTGAG-CAAAATT-ACATTGGCCA-AA-C---ATAA-TT----------------------------TTCCAACAT-CGGACCAA-taattttccaacatcggaccaaggagggagatatgtgatacatactaaaatgaacaatgtgttaaaagtaatcattgtc
gi|11 : ccagatagcaagcttacattggcccaacgttgacccatggttggtaaatcggcaacttatcgccgttggcagaacggcattggaccgacattgtACTGTGGGAT-CA---TTGAT-ATTGGG-C-CAAC----ATTGGACC-GA-CATTGTAA-TTATC-ACTGTGGGA-TCATTGACAAT-G-TTCCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTCAGT-GTT-GG-TGGA-TTGGCA-TCGGT-CCAATG--TTGGACCGACATTGTT-GAA--C-------------C----ATCAT-TG-TA------CCAA--TGTT-G--AT-TCA-ATATT--T-ATTA-GAGTTCT-A-TTGCTC-----ACTGTT-GGCACAAACACAggagggagatatgtgatacatactaaaatgaacaatgtgttaaaagtaatcattgtc
gi|12 : ataatcC----GA-CA--------GGAAGG--G--------GG--GGGGGGAGT---AAGAGAAC---AGA----AGAAGAC-AGCGAGAG-AGGTGCGAAAAA---C----GAAACA-GAGGACAACCGATGT-GAAATTTCAAACT--A-TCAAAGATA-AATTTGATGATT--ACGT-TT-CTGCA---ACA--TT-GGTCCA-ACGATT-GGCACAATG--TT-TC-AAT----A-C-T---------------------G-G-CATTGGAC----C----AATATTGAA---AATGTTG-AAT
gi|13 : tatgcaCA-C-ATA-AGTTT-CT-GCA-CTC-TGACTTG-AAAGTCATCCCCGACCAACAG--ACTGTGATG-TCC-CTGTCGCAT-CACTACTATAGGATAGCT-TCT-TTTGA-G-CTTTTTCTT---AGTAG-------------CAGCAGA---C---A-AA---TTAT-TAAGGTATTGATG--ATT-GT-TA-TAT--ATTTTTTAATTTGATAAT-CTC-ATT
gi|14 : A---C--ATT-GG--CCAAC-GTTG-G-TTA--------TGTGGGTAATTtttaattaaaat
gi|14 : ccagatagcaagcttGCAGTTTGGCAAAAAGACGGCAATGGGCGC--GAGACT--ATT-GGGTCCGAC-GTTG-AATTAT----CACTGTGGGTCATTGACATTGTT-CAACccccggcccatcatattcgggcagtttggcaaaaagacggcaatgggcgcgagactattgggtccgacgttgaattatcactgtgggtcattgacattgttcaacc
gi|15 : ccagatagcaagcttacattggccaacgttggttatgtgggtaattccccggcccatcatattcggTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCC--------------TGTGATG-TCA-TTG--------------------T--CTCTCTGTCTAATATTTTTTTCTG---AGTAGGCCTAATGGATGCGAGCAGA--G----ATAA---TTTTGTAA-GTA------------TTG--------ATTTTTAAATTTGATATT-CTC-ATCAc
gi|16 : GCAGTT-G-CAGA----CGGCATTGGAC-CAAAA---CAAATT-GA--CCTACAATTG---TTATATCCCACTGGTAGTCG-TAACATCA-TCCAAttctaaaattaa
gi|17 : gcaagcatcttacagtgtggcccaacgatggtatatggtatggtaatatccaggcaacagtatcTCAT-NN-NNN-----NNNN--NNNN-N--NN-NNN-NNNNN--N-N-NN-NAGTTCT-A-CTGCTC-----ACTGTT-GGCACAA--ACACAGAACCAACGTTGAAGAGAT----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTG
gi|2 : gCA-ACAT-GGACCCGA-CATTGTAA-TTATC-AC-GTGGGA-TC-TCGAC-ATTGTTTCCAACATACGGACCGA-CGTTGT-TTAT--T-----TTCAGT-GTT-GGT--GA-TGGACA--CGGT-CCAATGT-T-GGACCTA-ATTGTT-GAATCC-AAT-G-TTGGGACATAG-TCAT-TG-TAC-----CAAA--TGTT-G--ATATCA-AT------------GAGCTAT-ATCTGCTCGAGCAACTGTTTGGCACAAACACACAGAGCCAACG---------TTAAGGAGGTAAATA--------AAC-AACA---TTTTAAAGTAATTTTGATATATAATGAAGCCAAGTAAATGGCTA--TAACACAATTA-TTTTTAAATCTATTTCA-ATATTTTTGTGCATCAAAGATGGA----AAGAAACAATTAAATTCAAACTTT-AACTA----TTCCAGTTTACA-ACTTC-ACAGG--------TTTAAAACAATTGTAC--GATAGGCCTTCTCAAACTTGCCA-CAATA-ACTTTTCTGGCA-CTCGTGACT-GAAAAGTCTTCCCCG-CCAAGAAGAACTGTGATGTTCA-CTGTCGCAT-CACTC------GAT--CTCTCTGTCTGATG-CTTTTTCTT---AGTA-GACT-ATGGATGCCAGCAGACC-CTCAATAA---TTATGTAA-GTA-----G--GCC-CTATA-TATAATTTTTTTAATTTGATATTCCTCGATTAGCGATATTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTCTCCTGT-TAGTT-TGATCATGCGGGTATCCAATGTA---ATT--TTTATATTCCTCGGCCCCTTAA---------TAAATTACTGTATTAATTTTGATATGA-TTTCTACGTTCGCTAGTTAGATCTT-CATTTTTG-TTTCAAGTCCTGGGAGTTCTCGCCAG--ACAAAAGACTAT-GCCTCGTT---TA-GT-CTACAG--C--TAC-G-GATT-CAG-----ATGTTATCA-TCGGAC-AAGG----GA-AAGTAAAGGGGGGAAGGAG--------GG--GGGGGGGGTAAGA---GAA----ACAG---AGAAGAC-AGCGAGA--AGGTG-G-AAAGAACC----C-AACA-GAGGAC-ACCGATGT-G--ATTTCACACT--AATCAA--ATATAATTTGATGATTGGACGTATT-TTGC----ACATTTT-GGT-CA-GCA-TT-GGCACAA----TGTTCAAGT----AAC-T---------------------G-GCCATTGGG-----C----TACATTGGGCCCAACATTA-AA---------ATTTGA-TAACTGCGTGTTGGGC----CTACATTGGG-GCC-AACAGTGAGAGTAATATTGTA
gi|22 : c-A-TTAT----CACTGTGGGTCATTGACATTGTTCggcaca
gi|3 : aC-----AATGTT-GGTACAAACACACAAAACCAAGT---------T----------AA-AGAGGTGGAAAC-A-TA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAATAAAGGACTAGATA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAAGAATAATTAAACTCAAACTTT-AACTA----CT-GGGTTTACA-ATTACAGCAATATGAAAAATTAAAA-CAATT-TACATGGCAGGCCTTCTC-AACTTGCCT-C-TTA-ACTTCTCT-GCA-CTCGTGACT-G-AAAGTCATCCTCG-CCAAAAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-ATTATTCTG---AGTAGGCCT-ATTGACACCAGCAGA---C---ATAA---TTATGTAA----------------ATATA-TAT--G-ATTTTGGTTTGATATT-CTC-ATTaa
gi|3 : -ATTTA-TT-TT-GTTTATA-TCATCCG-CCCTTGA---------TAAA------T-TTA--TTTGATA--A-TT--TA---TTG-TAA--------T-AA-TTTTG-TTTTCAG---AAGGAGTT-T-G-CAGAAA-AAAAGACTA--TACTC-----------------G--C--TAC-G-GATTCC-G-----A-GT--T-G-TTG--C-ATCG----GA-CA--------GGGAAG--A--------AG--GAGGGGGGTAAGA---GAAC---AGA----AGAAGAC-AGCGAGAGAAAGTG-GAAGAGAA-T----CAAACA-GAGGAC-ACCGATGTGG-AATTTCAAACtttctaaaattaatataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcttatttattttgtttatatcatccgcccttgataaatttatttgataatttattgtaataattttgttttcagaaggagtttgcagaaaaaaagactatactcgctacggattccgagttgttgcatcggacagggaagaaggaggggggtaagagaacagaagaagacagcgagagaaagtggaagagaatcaaacagaggacaccgatgtggaatttcaaacaccatgaatacaata
gi|4 : caatgttggtacaaacacacaaaaccaagttaaagaggtggaaacatattttaaagtattttgatataatgaacaaataaaggactagatacacaattaatttttaaatctattcaatattttgtgcatcaaagatggaaaagaataattaaactcaaactttaactactgggtttacaattacagcaatatgaaaaattaaaacaatttacatggcaggccttctcaacttgcctcttaacttctctgcactcgtgactgaaagtcatcctcgccaaaaagaactgtgatgtcactgtcgcatcactagatctctctgtctgatgattattctgagtaggcctattgacaccagcagacataattatgtaaatatatatgattttggtttgatattctcatttttctaaaattaatataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcttGCA---ACA--T--AGTC---GCA-TT-GGCA---------------------GCAT---------------------G-A-CATTGGGC----C-----ACATTGGA-CCGACGTTGTAATTATCA-CTGTGGGACTCA-TTGACATTGTCC--A---ACATTCGG-ACCGAACGTTGTGAaccatgaatacaata
gi|4 : cagatagcagagcttacaatggcccacgttgggtattggttggtaaatcgaTGAC-ATTGGG-C-CA-----CATTGGACC-GA-CGTTGTAA-TTATC-ACTGTGGGACTCATTGAC-AT--TGTCCAACATTCGGACCGAACGTTGT-G-ATGAT-----TTCAGT-GTT-GGT-GGA-TTGACA-TCGGTGCCAATGT-T-GGACCGATATTGTTTGAA--CCAATTG-TTGGGACATAG-TCAT-TG-T-------CCAA--TGTTTGCCAT-TCACATATTCTT-A-TAAGAGTTCTTA-CTGCTCGAGC-ACTGTT-GGAACAAACACACAGAA-----G---------T----------AA-A--------AAC-A-CAACATTTTAAAGTA-TTT-GATATG--ATGAA--CAAGTAAATGGCTA--TA-CACAAT-GATTTTTAAATCTATT-CATATATTTT--TGCATTAAAAATGGA----ATGGAACAATTAATTCCTAACTTTTAACTAGGCCTA-TAGTTTACAGACTTCAAGAGT--------T-AAAAATAATT-TACAT-TTAGGC-TTCTC-AACTTGCCAAC-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGAAT-TCAGCTGTCGCATTCACTA------GAT--CTCTCTGTCTGATG-CTTTTTCTT---AGTAGAACT-ATGGATGCCAGCAGACCGCA--ATAA---TTATGTAA-GTT--G--G--CCC-CAATATTGT--GTTTTTTAATTTGATA-T-CTC-ACTAG-----------GCtgatttcagtgttggtggattgacatcggtgccaatgttggaccgatattgtttgaaccaattgttgggacatagtcattgtccaatgtttgccattcacatattcttataagagttcttactgctcgagcactgttggaacaaacacacagaagtaaaaacacaacattttaaagtatttgatatgatgaacaagtaaatggctatacacaatgatttttaaatctattcatatatttttgcattaaaaatggaatggaacaattaattcctaacttttaactaggcctatagtttacagacttcaagagttaaaaataatttacatttaggcttctcaacttgccaacataacttttctgcactcgtgactgaaagtcatccccgccaagaagaactgtgaattcagctgtcgcattcactagatctctctgtctgatgctttttcttagtagaactatggatgccagcagaccgcaataattatgtaagttggccccaatattgtgttttttaatttgatatctcactaggcttattttaaataatt
gi|5 : cagatagcagagcttacaatggcccacgttgggtattggttggtaaatcgagcaacatagtcgcattggcagcaTCT-GCA-CTTTTAACT-G-AAAGTCATTCTCA-CTCAAAAGAACTGTGATG-TCA-CTGCCACAT-CACTA------CAT--ATCTCTGTCTGATGTTTTTTTCTTCTAAGTATACCT-ATGGCTACAAGAAG----------AA---GTATGTAA-GTATTG--A--ATTGATGCA-TAT--ATTTTT--ATTTGATAAT-TAC-ATCAG-----------ttattttaaataatt
gi|5 : CAT-CGGGCATCC-ATTTATTTATTCGTTTTTA-TCATCCG-TCTTTAAGGTTTTTATTAAC------TATCA--TTTTATT--A-TT--TA---TTGTCA---------T-CA-ATTTG--TTTCAG--ATGG--ATT-TTG-CAG--A-AATTGACTATATGATCATTAGCTACGGACTT-AGATG--TAT-GTAATATTAGTTAATA-GTGGT-T-TCG--CTATGCATCGAA-CA--------GGGAAA--AC-------GGTTGGCTGGGGC---A---GAA----GGATAAGAGAAGAC-AGCGAGAG-AAATG-GAAGAGAA-C----CAAACA-GAAGAA-ACCGActaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatacatcgggcatccatttatttattcgtttttatcatccgtctttaaggtttttattaactatcattttattatttattgtcatcaatttgtttcagatggattttgcagaaattgactatatgatcattagctacggacttagatgtatgtaatattagttaatagtggtttcgctatgcatcgaacagggaaaacggttggctggggcagaaggataagagaagacagcgagagaaatggaagagaaccaaacagaagaaaccgaggattaacactt
gi|6 : tctgcacttttaactgaaagtcattctcactcaaaagaactgtgatgtcactgccacatcactacatatctctgtctgatgtttttttcttctaagtatacctatggctacaagaagaagtatgtaagtattgaattgatgcatatatttttatttgataattacatcagctaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntata---ACA--TT-GGCCCA-ATG-TT-GGTATAT-GGTTG-GTAAATC---GGC-TACATATTGCAGTTGGCAGAACG-G-CATTGGAC----CAACATATATTGGA-CCGACACTG-AATTATCA-CTGTTGGA-TCAC-TGACATTGTTC--CA--ACATC-GG-ACC-GACggattaacactt
gi|6 : gatagcaagcttGGC-ATTGGA-C-CAACATATATTGGACC-GA-CACTG-AA-TTATC-ACTGTTGGA-TCACTGAC-AT-TGTTCCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTAAGT-GTT-GGT-GGA-TTGACA-TCGGT-CCAATGT-T-GGACCGACATTGTT-GAA--CTAAT-G-TTGGGACATA-ATCAT-TG-TACATGTACCAA--TGTT-G--GG-TCG-ATATC--TTA-TA-GATCTC--A-CTACTC-----GCTGTT-GGCACAAACACACAGAACCCACG---------T----------TA-A--------AG-----A---TTTTAAAGTA-TTTTGATATA--ATAAA--CAAATAAATGGCTA--TA-AACAATTAAGTTTTAAATCTATT-CA-GTATTTT-GTGCATCAAAGTTGGAATTTAAAGAGCAATTAAATTC-AACT------------TT-GAGTTTACA-ATTTCAACATT--------TTAAAAACGATT-TACATGTTAGGCCTTCTC-TACgttgttattttaagtgttggtggattgacatcggtccaatgttggaccgacattgttgaactaatgttgggacataatcattgtacatgtaccaatgttgggtcgatatcttatagatctcactactcgctgttggcacaaacacacagaacccacgttaaagattttaaagtattttgatataataaacaaataaatggctataaacaattaagttttaaatctattcagtattttgtgcatcaaagttggaatttaaagagcaattaaattcaactttgagtttacaatttcaacattttaaaaacgatttacatgttaggccttctctac
gi|7 : gatagcaagcttacattggcccaatgttggtatatggttggtaaatcggctacatattgcagttggcagaacGGC-AGTGG-----AACA-ACATTGGATC-GA-CATTGTAA-TTATC-ACTGTTGGA-TCATTGAC-AT-TGTTCCAACAC-CGGACCGA-TGTTCA-T-AT--T-----TTCAGT-GTT-GG-TGGA-TTGACA-TCGGT-CCATTA--TTGGACCGACATTATT-GAA--CAAAT-G-TTGGAAAATA-ATCAT-TG-T-T-----TCAT--TGTT-G--GG-TCC-ATATC--T---TA-------T-A-CTGCTC-----ACTGTT-GGCACAGACACACAAAACCAACA---------T----------TA-A--------AGCGG-C---------GAGTA-TTTTAATATA--AGGAATTTAAATAAATGGCTA--TA-C
gi|8 : ttatattggccctatgttggtatatatgactggtaaatcggctgcagagcgcagttggcagaacAT-CGGGTATCC-TCGTA-TAATT-GGTTATA-TC--TCG-CCCTTAA---------TAAA------TATT---TTTGATA--A-TT--TA---TT--TAA-------TGACA-TTT-G-TTTGCAGTC-TGGGAGTT-GCG-CAG--A-AAAAGACTAT--GCTCGTT---TA-G-ACTA--G--C--TAC-G-GAT--CAG-----A-GTTAT-G------C-AT-C----GAGCA--------GGGAAG--AAGGGGGAAGG--GGGGGGGGT---AA--GAAGAGCAGA----AGAAGACTAGCGAGAG-AGGTG-GAAAAGAACC----AAAGCAGGAGGAC-ACCGATGT-G-AATTC--AACTAAATACAA--A-A-AATTTGATGATT-GATGT-TT-TTGCAACCACA--TTAGGTCCAGGCA-TTCGGCACAA----TG-T
gi|9 : tTTAGGCCTTCTC-AACTTGCCA-C-ATACACTTTTCT-GCAACTCGTG-CT-G-AAAGTC-TTCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------G-T--CTCTCTGTCTGATG-CTTTTTCTT---AGTAGGACT-ATGGATGCCAGCAGACCGC---ATAA---TTATGTAA-GTA--G--GAAGCC-GCCTA-TAT--TTTTTTTTATTTGATA-T-CTCTATTAG-----------GCCt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TCCCAGGTAGCAAGGGCACATTGGCCCAATGTTGGTTGTTTGGTTG
Unaligned ( gi|19 ): GATAACAAGCTTACATTAGCCCAATGTTGGGCCACTGTT
Unaligned ( gi|20 ): CCAGATAGCAATCTTACATTGGCCCAACGTTGG
Unaligned ( gi|21 ): TACTTAAGGGGATGATTAATAGTACGTCACGT
Unaligned ( gi|23 ): TTAAGGGGATGATTAATAGTACGTCACGT
Alignments
lowQualScore : 1 3333 333333333333 1 11 1 222 11111 444444444444444 22222222 1111111111 11 111 1 11111111 22 2222 2 11 2222222 111111 22222 44444444444444444444444444444444 11111111 11 1111 1111 22222222 111111 3333333 4444444444444 1 77777777777777777777777777777777777777777777777777777777777777777777777777777777 1 1 111 1111 333333333 222222 111 11 11 111 11 33333333333 222 11 111 33333333333333333333 11 22222 333333333333333333333 22222222 33333333333 444444444444444444444 111111 1111 222222 11 1 1 1111 3333 999999999999999999999999999999999 333333333333 11111 3333333 1 11
lowQualScore : 3 6 0000 888888888888 0 33 0 0 111 99999 2 5 7 2 333333333333333 7 44444444 5 8888888888 5 5 5 5 4 3 5 5 0 00 0 5 5 666 1 5 888 66666666 6 6 22 6 6 6 0000 3 6 99 0 777 88 5 5 7777777 77 5 99999 5 888888 5 2 5 5 33333 5 55555555555555555555555555555555 11111111 5 99 88 99 6 0 0 8 8 8 7777 6 0 8 1 7777 99 8 0 99999999 3 0 8 0 6 6 6 6 5 5 5 5 0 5 0 5 5 5 444444 0 66 5 5 888 33 5 3333333 0 888 5 1111111111111 3 5 777 0 9 5 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333 1 5 5 1 000 8 0 0000 999 8 66 8 222222222 333333 0 111 11 8 11 444 33 99999999999 8 0 88 000 8 3 8 11 8 444 3 99999999999999999999 8 8 44 0 00000 8 000000000000000000000 6 44444444 66666666666 99 888888888888888888888 6 6 6 777777 6 6 8 88 4444 555555 22 0 0 4444 99 6 6 6 6 6 1111 6 0 222222222222222222222222222222222 111111111111 8 9 8 0 55555 2 55 22 7777777 0 00 1 1 1
lowQualScore : . . .... ............ . .. . . ... ..... . . . . ............... . ........ . .......... . . . . . . . . . .. . . . ... . . ... ........ . . .. . . . .... . . .. . ... .. . . ....... .. . ..... . ...... . . . . ..... . ................................ ........ . .. .. .. . . . . . . .... . . . . .... .. . . ........ . . . . . . . . . . . . . . . . . . ...... . .. . . ... .. . ....... . ... . ............. . . ... . . . . ................................................................................ . . . . ... . . .... ... . .. . ......... ...... . ... .. . .. ... .. ........... . . .. ... . . . .. . ... . .................... . . .. . ..... . ..................... . ........ ........... .. ..................... . . . ...... . . . .. .... ...... .. . . .... .. . . . . . .... . . ................................. ............ . . . . ..... . .. .. ....... . .. . . .
lowQualScore : 3 7 7777 666666666666 0 88 2 0 888 22222 8 4 6 2 000000000000000 3 00000000 7 9999999999 0 0 0 0 2 2 0 0 1 11 1 0 0 888 4 7 333 88888888 7 7 88 7 7 7 5555 7 7 22 0 555 22 7 7 6666666 99 7 66666 7 000000 7 4 7 7 11111 0 77777777777777777777777777777777 99999999 7 22 33 22 7 8 8 0 0 0 0000 0 8 0 0 0000 00 0 8 00000000 8 8 0 8 7 7 7 7 0 0 0 0 4 0 2 0 0 0 444444 1 99 0 0 888 22 0 1111111 1 888 0 2222222222222 9 0 999 4 8 0 0 22222222222222222222222222222222222222222222222222222222222222222222222222222222 0 5 5 0 222 0 6 6666 000 0 66 0 000000000 000000 8 888 00 0 00 000 22 22222222222 0 8 88 666 0 2 0 00 0 444 2 88888888888888888888 0 0 22 8 00000 0 333333333333333333333 7 22222222 00000000000 22 000000000000000000000 7 7 7 777777 7 7 0 88 5555 000000 55 0 0 9999 22 7 7 7 7 7 7777 7 8 444444444444444444444444444444444 444444444444 0 6 0 8 55555 5 88 00 0000000 0 22 0 0 0
consensus : GCAGTT-GGCAGAA---CGGCATTGGGC-C--GA---C--ATT-GG--CCGAC-GTTG-A-TTAT----CACTGTGGGTCATTGACATCGTTCCAACATATTCGGGCAG--GAATTATCTGACTGTGGGAT-CA---TTGGC-ATTGGG-C-CAACG-AC-ATTGGA-CC-GA-CGTTGTAA-TTATC-ACTGTGGGA-TCATTGAC-A-T-GTTTCCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTCAGT-GTT-GGTTGGA-TTGACA-TCGGT-CCAATGT-TTGGACCGACATTGTT-GAA--C-AAT-G-TTGGGACATAGATCAT-TG-TAC-----CCAA--TGTT-G--AT-TCA-ATATC--T-A-TA-GAGTTCT-A-CTGCTC-----ACTGTT-GGCACAAACACACAGAACCAACG---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAGTAAATGGCTA--TA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAGGAACAATTAAATTCAAACTTT-AACTA----TT-NAGTTTACA-ACTTCAACAGT--------TTAAAAACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGGACTA-TGGATGCCAGCAGACCGC---ATAA---TTATGTAA-GTA--G--G--GCC-NTATA-TAT--NTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTCNCCTGTATAGTTATGNTCAT-CGGGTATCC-ATTTA-TTATT-GTTTATA-TCATCCG-CCCTTAA---------TAAA------TATTA--TTTGATA--A-TT--TA---TTGCTAA-------TT-CA-TTTTG-TTTTCAGTCCTGGGAGTT-TCG-CAG--A-AAAAGACTAT-TGCTCGTT---TA-GGACTA-AG--C--TAC-G-GATTCCAG-----A-GTTAT-G-TCG--C-ATGC----GA-CA--------GGGAAG--A--------GG--GGGGGGGGT---A---GAA----AGA----AGAAGAC-AGCGAGAG-AGGTG-GAAAAGAACC----CAAACA-GAGGAC-ACCGATGT-G-AATTTCAAACT--ATTCAA--ATA-AATTTGATGATT-GACGT-TT-TTGCA---ACA--TT-GGTCCA-GCG-TT-GGCACAA-G--TG-TCAAATC---AGCT---------------------G-G-CATTGGGC----C----TACATTGGA-CCGACGTTG-AATTATCA-CTGTTGGATNACTTGGCGTTGGGCA-A---TACATT-GG-GCCAACANTGGGAGTANTATTGTA
Reference ( family-744 ) : GCAGTT-GGCAGAA---CGGCATTGGGC-C--GA---C--ATT-GG--CCGAC-GTTG-A-TTAT----CACTGTGGGTCATTGACATCGTTCCAACNNNNNNNNNNNNNNGAATTATCTGACTGTGGGAT-CA---TTGAC-ATTGGG-C-CAACG-AC-ATTGGA-CC-GA-CGTTGTAA-TTATC-ACTGTGGGA-TCATTGAC-A-T-GTTTCCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTCAGT-GTT-GGTTGGA-TTGACA-TCGGT-CCAATGT-TTGGACCGACATTGTT-GAA--C-AAT-G-TTGGGACATAGATCAT-TG-TAC-----CCAA--TGTT-G--AT-TCA-ATATC--T-A-TA-GAGTTCT-A-CTGCTC-----ACTGTT-GGCACAAACACACAGAACCAACG---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAGTAAATGGCTA--TA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAGGAACAATTAAATTCAAACTTT-AACTA----TT-NAGTTTACA-ACTTCAACAGT--------TTAAAAACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGGACTA-TGGATGCCAGCAGACCGC---ATAA---TTATGTAA-GTA--G--G--GCC-NTATA-TAT--NTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTCNCCTGTATAGTTATGNTCAT-CGGGTATCC-ATTTA-TTATT-GTTTATA-TCATCCG-CCCTTAA---------TAAA------TATTA--TTTGATA--A-TT--TA---TTGCTAA-------TT-CA-TTTTG-TTTTCAGTCCTGGGAGTT-TCG-CAG--A-AAAAGACTAT-TGCTCGTT---TA-GGACTA-AG--C--TAC-G-GATTCCAG-----A-GTTAT-G-TCG--C-ATGC----GA-CA--------GGGAAG--A--------GG--GGGGGGGGT---A---GAA----AGA----AGAAGAC-AGCGAGAG-AGGTG-GAAAAGAACC----CAAACA-GAGGAC-ACCGATGT-G-AATTTCAAACT--ATTCAA--ATA-AATTTGATGATT-GACGT-TT-TTGCA---ACA--TT-GGTCCA-GCG-TT-GGCACAA-G--TG-TCAAAT----AGCT---------------------G-G-CATTGGGC----C----TACATTGGA-CCGACGTTG-AATTATCA-CTGTTGGATCACTTGACGTTGNNCA-A---TACATT-GG-GCCAACANTGNGAGTANTATTGTA
gi|1 : GCAGTT-GGCAGAA---CGGCATTGGGC-C--AA---C--ATTCGA--CCGAC-ATTGCN-NNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTATCTGACTGTGGGATTCAATGTGGACGATTGCTTC-CAATG-AC-ATCG-A-CC-GAATGTTGTAAGTTATCTACTGTGGGACTCATTGAC-A-T-GTTTTCAAAGT-CGGACCGA-CGTTGGAT-AT--TGGGTGTCAAGTCGTTTGGTTGGAGCTGACAATCGGT-CCAATGTATTGGACCGCTAT-GTT-GAA--C-AAT-GGTTGGGACATAGATCATGTGATAT-----CGAACTTGTT-G--AT-TCA-ATATC--T-A-TA-GAGATCT-A-CTGCTC-----ACTGTT-GGTACAAACACACAAAACCAGCA---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--TAAGTAAATGACTA--TA-CACAATTAATTTTTAAATCTGTT-CA-ATATTTT-GTGCATCAAGGATGGA----AAGGAACAAATAAATTCAAACTTT-AACAA----TT-CAGTTTACA-ACTTCAACAGT--------TCAAAGACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTT-ATG---AGTAGGACTA-TGGATGCCATCAGACCGC---ATAAACTTTATGTAA-GTA--G--G--GCC-CTATA-TAT--CTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGCCTATATAGTTATGTTC---TGGGTATCC-ATTTA-TTATT-GATTATA-TGAATCG-GCCTTAA---------TAAA------TATTA--TTTGATA--ATTT--TA---TTTCTAA-------TT-CA-TTTTGTTTTTCAGTCCTGGGAGTT-TCG-TAG--A-AAAAGA-TAT-TGCTCGTT---TA-AGACTA-AG--CAAAACAG-GATTCCAG-----A-GTT-T-GATTG--C-ATGC----GA-CA--------GGGAAG--A--------GG--GGGGGGAGC---A---GA-------A----AGAAGAC-CGCGAGAG-AGGTG-GAAAAGAACCATTGCAAACA-GAGGAC-ACAGATGT-G-ACTTTCAAACT--ATTCAAT-CTA-AATTTGATGATT-GACGT-TTATTACA---ACA--TT-GGT-CA-GCA-TT-GGCCCAA-G--TG-TCAAAT----AGCT---------------------GTG-CATTGGGC----C----TACATTGGG-CCAAC---A-AATTAAAAGATGTTGAATAACTTGGCGTTGGACACA---TACATT-GGCGCCAACAATAGGAGTATTATTGTA
gi|10 : ---ACA--TT-GGCCCA-ACG-TT-GACCCAT-GGTTG-GTAAATCGGCAACTTATC-----------------G-C-CGTTGG-CAGAAC----GGCATTGGA-CCGACATTGTAATTATCA-CTGTGGGATCA-TTGACATTGAGCA-AAATTACATT-GG-CCAAACAataaca
gi|10 : ccagatagcaagcttAATTATC--ACTGTGGGAT-CA---TTGAC-ATTGAG-CAAAATT-AC-ATTGGC-CA-AA-C---ATAA-TT-----------------------------TTCCAACAT-CGGACCAA-taattttccaacatcggaccaaggagggagatatgtgatacatactaaaatgaacaatgtgttaaaagtaatcattgtc
gi|11 : ccagatagcaagcttacattggcccaacgttgacccatggttggtaaatcggcaacttatcgccgttggcagaacggcattggaccgacattgtACTGTGGGAT-CA---TTGAT-ATTGGG-C-CAAC-----ATTGGA-CC-GA-CATTGTAA-TTATC-ACTGTGGGA-TCATTGACAA-T-G-TTCCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTCAGT-GTT-GG-TGGA-TTGGCA-TCGGT-CCAATG--TTGGACCGACATTGTT-GAA--C-------------C----ATCAT-TG-TA------CCAA--TGTT-G--AT-TCA-ATATT--T-ATTA-GAGTTCT-A-TTGCTC-----ACTGTT-GGCACAAACACAggagggagatatgtgatacatactaaaatgaacaatgtgttaaaagtaatcattgtc
gi|12 : ataatcC----GA-CA--------GGAAGG--G--------GG--GGGGGGAGT---AAGAGAAC---AGA----AGAAGAC-AGCGAGAG-AGGTGCGAAAAA---C----GAAACA-GAGGACAACCGATGT-GAAATTTCAAACT--A-TCAAAGATA-AATTTGATGATT--ACGT-TT-CTGCA---ACA--TT-GGTCCA-ACGATT-GGCACAATG--TT-TC-AAT----A-CT---------------------G-G-CATTGGAC----C----AATATTGAA---AATGTTG-AAT
gi|13 : tatgcaCA-C-ATA-AGTTT-CT-GCA-CTC-TGACTTG-AAAGTCATCCCCGACCAACAG--ACTGTGATG-TCC-CTGTCGCAT-CACTACTATAGGATAGCT-TCT-TTTGA-G-CTTTTT-CTT---AGTAG-------------CAGCAGA---C---A-AA---TTAT-TAAGGTATTGATG--ATT-GT-TA-TAT--ATTTTTTAATTTGATAAT-CTC-ATT
gi|14 : A---C--ATT-GG--CCAAC-GTTG-G-TTAT--------GTGGGTAATT--CCCCGGCCCATCATATTCGGGCAG--------TTTGGCAAAAAGAC--------GGC-AATGGG-CGCGA-G-ACTATTGGGTCC-GA-CGTTG-AA-TTATC-ACTGTGGG--TCATTGAC-ATT-GTT--CAACtttaattaaaat
gi|14 : ccagatagcaagcttGCAGTTTGGCAAAAAGACGGCAATGGGCGC--GAGACT--ATT-GGGTCCGAC-GTTG-AATTAT----CACTGTGGGTCATTGACATTGTT-CAACc
gi|15 : ccagatagcaagcttacattggccaacgttggttatgtgggtaattccccggcccatcatattcggTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCC--------------TGTGATG-TCA-TTGTC----------------------TCTCTGTCTAATA-TTTTTTTCTG---AGTAGGCCTAATGGATGCGAGCAGA--G----ATAA---TTTTGTAA-GTA------------TTG--------ATTTTTAAATTTGATATT-CTC-ATCAc
gi|16 : GCAGTT-G-CAGA----CGGCATTGGAC-CAAAA---CAAATT-GA--CCTACAATTG---TTATATCCCACTGGTAGTCG-TAACATCA-TCCAAttctaaaattaa
gi|17 : gcaagcatcttacagtgtggcccaacgatggtatatggtatggtaatatccaggcaacagtatcTCAT-NN-NNN-----NNNN--NNNN-N--NN-NNN-NNNNN--N-N-NN-NAGTTCT-A-CTGCTC-----ACTGTT-GGCACAA--ACACAGAACCAACGTTGAAGAGAT----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTG
gi|2 : gCA-AC-AT-GGA-CCCGA-CATTGTAA-TTATC-AC-GTGGGA-TC-TCGAC-A-TTGTTTCCAACATACGGACCGA-CGTTGT-TTAT--T-----TTCAGT-GTT-GGT--GA-TGGACA--CGGT-CCAATGT-T-GGACCTA-ATTGTT-GAATCC-AAT-G-TTGGGACATAG-TCAT-TG-TAC-----CAAA--TGTT-G--ATATCA-AT------------GAGCTAT-ATCTGCTCGAGCAACTGTTTGGCACAAACACACAGAGCCAACG---------TTAAGGAGGTAAATA--------AAC-AACA---TTTTAAAGTAATTTTGATATATAATGAAGCCAAGTAAATGGCTA--TAACACAATTA-TTTTTAAATCTATTTCA-ATATTTTTGTGCATCAAAGATGGA----AAGAAACAATTAAATTCAAACTTT-AACTA----TTCCAGTTTACA-ACTTC-ACAGG--------TTTAAAACAATTGTAC--GATAGGCCTTCTCAAACTTGCCA-CAATA-ACTTTTCTGGCA-CTCGTGACT-GAAAAGTCTTCCCCG-CCAAGAAGAACTGTGATGTTCA-CTGTCGCAT-CACTC------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTA-GACTA-TGGATGCCAGCAGACC-CTCAATAA---TTATGTAA-GTA-----G--GCC-CTATA-TATAATTTTTTTAATTTGATATTCCTCGATTAGCGATATTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTCTCCTGT-TAGTT-TGATCATGCGGGTATCCAATGTA---ATT--TTTATATTCCTCGGCCCCTTAA---------TAAATTACTGTATTAATTTTGATATGA-TTTCTACGTTCGCTAGTTAGATCTT-CATTTTTG-TTTCAAGTCCTGGGAGTTCTCGCCAG--ACAAAAGACTAT-GCCTCGTT---TA-GT-CTACAG--C--TAC-G-GATT-CAG-----ATGTTATCA-TCGGAC-AAGG----GA-AAGTAAAGGGGGGAAGGAG--------GG--GGGGGGGGTAAGA---GAA----ACAG---AGAAGAC-AGCGAGA--AGGTG-G-AAAGAACC----C-AACA-GAGGAC-ACCGATGT-G--ATTTCACACT--AATCAA--ATATAATTTGATGATTGGACGTATT-TTGC----ACATTTT-GGT-CA-GCA-TT-GGCACAA----TGTTCAAGT----AACT---------------------G-GCCATTGGG-----C----TACATTGGGCCCAACATTA-AA---------ATTTGATAACTGCGTGTTGGGC--C---TACATTGGG-GCCAACAGTGAGAGTAATATTGTA
gi|22 : c-A-TTAT----CACTGTGGGTCATTGACATTGTTCggcaca
gi|3 : aC-----AATGTT-GGTACAAACACACAAAACCAAGT---------T----------AA-AGAGGTGGAAAC-A-TA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAATAAAGGACTAGATA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAAGAATAATTAAACTCAAACTTT-AACTA----CT-GGGTTTACA-ATTACAGCAATATGAAAAATTAAAA-CAATT-TACATGGCAGGCCTTCTC-AACTTGCCT-C-TTA-ACTTCTCT-GCA-CTCGTGACT-G-AAAGTCATCCTCG-CCAAAAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-ATTATT-CTG---AGTAGGCCTA-TTGACACCAGCAGA---C---ATAA---TTATGTAA----------------ATATA-TAT--G-ATTTTGGTTTGATATT-CTC-ATTaa
gi|3 : -ATTTA-TT-TT-GTTTATA-TCATCCG-CCCTTGA---------TAAA------T-TTA--TTTGATA--A-TT--TA---TTG-TAA--------T-AA-TTTTG-TTTTCAG---AAGGAGTT-T-G-CAGAAA-AAAAGACTA--TACTC-----------------G--C--TAC-G-GATTCC-G-----A-GT--T-G-TTG--C-ATCG----GA-CA--------GGGAAG--A--------AG--GAGGGGGGTAAGA---GAAC---AGA----AGAAGAC-AGCGAGAGAAAGTG-GAAGAGAA-T----CAAACA-GAGGAC-ACCGATGTGG-AATTTCAAACtttctaaaattaatataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcttatttattttgtttatatcatccgcccttgataaatttatttgataatttattgtaataattttgttttcagaaggagtttgcagaaaaaaagactatactcgctacggattccgagttgttgcatcggacagggaagaaggaggggggtaagagaacagaagaagacagcgagagaaagtggaagagaatcaaacagaggacaccgatgtggaatttcaaacaccatgaatacaata
gi|4 : caatgttggtacaaacacacaaaaccaagttaaagaggtggaaacatattttaaagtattttgatataatgaacaaataaaggactagatacacaattaatttttaaatctattcaatattttgtgcatcaaagatggaaaagaataattaaactcaaactttaactactgggtttacaattacagcaatatgaaaaattaaaacaatttacatggcaggccttctcaacttgcctcttaacttctctgcactcgtgactgaaagtcatcctcgccaaaaagaactgtgatgtcactgtcgcatcactagatctctctgtctgatgattattctgagtaggcctattgacaccagcagacataattatgtaaatatatatgattttggtttgatattctcatttttctaaaattaatataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcttTGGCAG-CA---T-GAC-ATTGGG-C-CA-----C-ATTGGA-CC-GA-CGTTGTAA-TTATC-ACTGTGGGACTCATTGAC-A-T--TGTCCAACATTCGGACCGAACGTTGT-G-ATGAT-----TTCAGT-GTT-GGT-GGA-TTGACA-TCGGTGCCAATGT-T-GGACCGATATTGTTTGAA--CCAATTG-TTGGGACATAG-TCAT-TG-T-------CCAA--TGTTTGCCAT-TCACATATTCTT-A-TAAGAGTTCTTA-CTGCTCGAGC-ACTGTT-GGAACAAACACACAGAA-----G---------T----------AA-A--------AAC-A-CAACATTTTAAAGTA-TTT-GATATG--ATGAA--CAAGTAAATGGCTA--TA-CACAAT-GATTTTTAAATCTATT-CATATATTTT--TGCATTAAAAATGGA----ATGGAACAATTAATTCCTAACTTTTAACTAGGCCTA-TAGTTTACAGACTTCAAGAGT--------T-AAAAATAATT-TACAT-TTAGGC-TTCTC-AACTTGCCAAC-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGAAT-TCAGCTGTCGCATTCACTA------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGAACTA-TGGATGCCAGCAGACCGCA--ATAA---TTATGTAA-GTT--G--G--CCC-CAATATTGT--GTTTTTTAATTTGATA-T-CTC-ACTAG-----------GCaccatgaatacaata
gi|5 : cagatagcagagcttacaatggcccacgttgggtattggttggtaaatcgagcaacatagtcgcatTCT-GCA-CTTTTAACT-G-AAAGTCATTCTCA-CTCAAAAGAACTGTGATG-TCA-CTGCCACAT-CACTA------CAT--ATCTCTGTCTGATGTTTTTTT-CTTCTAAGTATACCTA-TGGCTACAAGAAG----------AA---GTATGTAA-GTATTG--A--ATTGATGCA-TAT--ATTTTT--ATTTGATAAT-TAC-ATCAG-----------ttattttaaataatt
gi|5 : CAT-CGGGCATCC-ATTTATTTATTCGTTTTTA-TCATCCG-TCTTTAAGGTTTTTATTAAC------TATCA--TTTTATT--A-TT--TA---TTGTCA---------T-CA-ATTTG--TTTCAG--ATGG--ATT-TTG-CAG--A-AATTGACTATATGATCATTAGCTACGGACTT-AGATG--TAT-GTAATATTAGTTAATA-GTGGT-T-TCG--CTATGCATCGAA-CA--------GGGAAA--AC-------GGTTGGCTGGGGC---A---GAA----GGATAAGAGAAGAC-AGCGAGAG-AAATG-GAAGAGAA-C----CAAACA-GAAGAA-ACCGActaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatacatcgggcatccatttatttattcgtttttatcatccgtctttaaggtttttattaactatcattttattatttattgtcatcaatttgtttcagatggattttgcagaaattgactatatgatcattagctacggacttagatgtatgtaatattagttaatagtggtttcgctatgcatcgaacagggaaaacggttggctggggcagaaggataagagaagacagcgagagaaatggaagagaaccaaacagaagaaaccgaggattaacactt
gi|6 : tctgcacttttaactgaaagtcattctcactcaaaagaactgtgatgtcactgccacatcactacatatctctgtctgatgtttttttcttctaagtatacctatggctacaagaagaagtatgtaagtattgaattgatgcatatatttttatttgataattacatcagctaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntata---ACA--TT-GGCCCA-ATG-TT-GGTATAT-GGTTG-GTAAATC---GGCTACATATTGCAGTTGGCAGAACG-G-CATTGGAC----CAACATATATTGGA-CCGACACTG-AATTATCA-CTGTTGGATCAC-TGACATTGTTCC-A----ACATC-GG-ACCGACGTTGggattaacactt
gi|6 : gatagcaagcttGGC-ATTGGA-C-CAACATAT-ATTGGA-CC-GA-CACTG-AA-TTATC-ACTGTTGGA-TCACTGAC-A-T-TGTTCCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTAAGT-GTT-GGT-GGA-TTGACA-TCGGT-CCAATGT-T-GGACCGACATTGTT-GAA--CTAAT-G-TTGGGACATA-ATCAT-TG-TACATGTACCAA--TGTT-G--GG-TCG-ATATC--TTA-TA-GATCTC--A-CTACTC-----GCTGTT-GGCACAAACACACAGAACCCACG---------T----------TA-A--------AG-----A---TTTTAAAGTA-TTTTGATATA--ATAAA--CAAATAAATGGCTA--TA-AACAATTAAGTTTTAAATCTATT-CA-GTATTTT-GTGCATCAAAGTTGGAATTTAAAGAGCAATTAAATTC-AACT------------TT-GAGTTTACA-ATTTCAACATT--------TTAAAAACGATT-TACATGTTAGGCCTTCTC-TACttattttaagtgttggtggattgacatcggtccaatgttggaccgacattgttgaactaatgttgggacataatcattgtacatgtaccaatgttgggtcgatatcttatagatctcactactcgctgttggcacaaacacacagaacccacgttaaagattttaaagtattttgatataataaacaaataaatggctataaacaattaagttttaaatctattcagtattttgtgcatcaaagttggaatttaaagagcaattaaattcaactttgagtttacaatttcaacattttaaaaacgatttacatgttaggccttctctac
gi|7 : gatagcaagcttacattggcccaatgttggtatatggttggtaaatcggctacatattgcagttggcagaacGGC-AGTGG-----AACA-AC-ATTGGA-TC-GA-CATTGTAA-TTATC-ACTGTTGGA-TCATTGAC-A-T-TGTTCCAACAC-CGGACCGA-TGTTCA-T-AT--T-----TTCAGT-GTT-GG-TGGA-TTGACA-TCGGT-CCATTA--TTGGACCGACATTATT-GAA--CAAAT-G-TTGGAAAATA-ATCAT-TG-T-T-----TCAT--TGTT-G--GG-TCC-ATATC--T---TA-------T-A-CTGCTC-----ACTGTT-GGCACAGACACACAAAACCAACA---------T----------TA-A--------AGCGG-C---------GAGTA-TTTTAATATA--AGGAATTTAAATAAATGGCTA--TA-C
gi|8 : ttatattggccctatgttggtatatatgactggtaaatcggctgcagagcgcagttggcagaacAT-CGGGTATCC-TCGTA-TAATT-GGTTATA-TC--TCG-CCCTTAA---------TAAA------TATT---TTTGATA--A-TT--TA---TT--TAA-------TGACA-TTT-G-TTTGCAGTC-TGGGAGTT-GCG-CAG--A-AAAAGACTAT--GCTCGTT---TA-G-ACTA--G--C--TAC-G-GAT--CAG-----A-GTTAT-G------C-AT-C----GAGCA--------GGGAAG--AAGGGGGAAGG--GGGGGGGGT---AA--GAAGAGCAGA----AGAAGACTAGCGAGAG-AGGTG-GAAAAGAACC----AAAGCAGGAGGAC-ACCGATGT-G-AATTC--AACTAAATACAA--A-A-AATTTGATGATT-GATGT-TT-TTGCAACCACA--TTAGGTCCAGGCA-TTCGGCACAA----TG-T
gi|9 : tTTAGGCCTTCTC-AACTTGCCA-C-ATACACTTTTCT-GCAACTCGTG-CT-G-AAAGTC-TTCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------G-T--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGGACTA-TGGATGCCAGCAGACCGC---ATAA---TTATGTAA-GTA--G--GAAGCC-GCCTA-TAT--TTTTTTTTATTTGATA-T-CTCTATTAG-----------GCCt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TCCCAGGTAGCAAGGGCACATTGGCCCAATGTTGGTTGTTTGGTTG
Unaligned ( gi|19 ): GATAACAAGCTTACATTAGCCCAATGTTGGGCCACTGTT
Unaligned ( gi|20 ): CCAGATAGCAATCTTACATTGGCCCAACGTTGG
Unaligned ( gi|21 ): TACTTAAGGGGATGATTAATAGTACGTCACGT
Unaligned ( gi|23 ): TTAAGGGGATGATTAATAGTACGTCACGT
Alignments
lowQualScore : 1 1 222 11 1 1 2222 33333333 2222 11 66666666666666666666666666666666 1111 111 1 111 1 11111111 22 2222 2 11 2222222 111111 22222 44444444444444444444444444444444 11111111 11 1111 1111 22222222 111111 1 3333333 4444444444444 1 77777777777777777777777777777777777777777777777777777777777777777777777777777777 1 1 111 1111 333333333 222222 111 11 11 111 11 33333333333 222 11 111 33333333333333333333 11 22222 333333333333333333333 22222222 33333333333 444444444444444444444 111111 1111 222222 11 1 1 1111 3333 9999999999999999999999999999999999999 333333333333 11111 3333333 1 11
lowQualScore : 5 5 777 33 0 6 0 2222 33333333 2 2 3333 33 5 2 55555555555555555555555555555555 6 6 2222 666 5 0 5 5 5 5 5 5 1 5 5 444 3 6 888 66666666 6 6 22 6 6 6 0000 3 6 99 0 777 88 5 5 7777777 77 5 99999 5 888888 5 2 5 5 33333 5 55555555555555555555555555555555 11111111 5 99 88 99 6 0 0 8 8 8 7777 6 0 8 1 7777 99 8 0 99999999 3 0 8 0 6 6 6 6 5 5 5 5 0 5 0 5 5 5 444444 0 66 0 888 33 5 3333333 0 888 5 1111111111111 3 5 777 0 9 5 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333 1 5 5 1 000 8 0 0000 999 8 66 8 222222222 333333 0 111 11 8 11 444 33 99999999999 8 0 88 000 8 3 8 11 8 444 3 99999999999999999999 8 8 44 0 00000 8 000000000000000000000 6 44444444 66666666666 99 888888888888888888888 6 6 6 777777 6 6 8 88 4444 555555 22 0 0 4444 99 6 6 6 6 6 1111 6 0 7777777777777777777777777777777777777 111111111111 8 9 8 0 55555 1 55 00 7777777 0 00 1 1
lowQualScore : . . ... .. . . . .... ........ . . .... .. . . ................................ . . .... ... . . . . . . . . . . . ... . . ... ........ . . .. . . . .... . . .. . ... .. . . ....... .. . ..... . ...... . . . . ..... . ................................ ........ . .. .. .. . . . . . . .... . . . . .... .. . . ........ . . . . . . . . . . . . . . . . . . ...... . .. . ... .. . ....... . ... . ............. . . ... . . . . ................................................................................ . . . . ... . . .... ... . .. . ......... ...... . ... .. . .. ... .. ........... . . .. ... . . . .. . ... . .................... . . .. . ..... . ..................... . ........ ........... .. ..................... . . . ...... . . . .. .... ...... .. . . .... .. . . . . . .... . . ..................................... ............ . . . . ..... . .. .. ....... . .. . .
lowQualScore : 0 5 333 88 0 5 0 8888 00000000 2 2 4444 66 2 3 88888888888888888888888888888888 7 7 7777 333 7 1 7 7 7 0 7 7 4 7 7 999 3 7 333 88888888 7 7 88 7 7 7 5555 7 7 22 0 555 22 7 7 6666666 99 7 66666 7 000000 7 4 7 7 11111 0 77777777777777777777777777777777 99999999 7 22 33 22 7 8 8 0 0 0 0000 0 8 0 0 0000 00 0 8 00000000 8 8 0 8 7 7 7 7 0 0 0 0 4 0 2 0 0 0 444444 1 99 0 888 22 0 1111111 1 888 0 2222222222222 9 0 999 4 8 0 0 22222222222222222222222222222222222222222222222222222222222222222222222222222222 0 5 5 0 222 0 6 6666 000 0 66 0 000000000 000000 8 888 00 0 00 000 22 22222222222 0 8 88 666 0 2 0 00 0 444 2 88888888888888888888 0 0 22 8 00000 0 333333333333333333333 7 22222222 00000000000 22 000000000000000000000 7 7 7 777777 7 7 0 88 5555 000000 55 0 0 9999 22 7 7 7 7 7 7777 7 8 2222222222222222222222222222222222222 444444444444 0 6 0 8 55555 0 88 55 0000000 0 22 0 0
consensus : GCAGTTGGCAGAACGGCATTGGGCC--AAC--ATT-GGCCNAC-GTTG---GTTAT----CGCTGTNGGTNATTGACATCGNTCCAACATANTCGGGCAG----CATCTGACTGTGGGATC--AT-TGG-C-ATTGGG-C-CAACG-AC-ATTGGA-CC-GA-CGTTGTAA-TTATC-ACTGTGGGA-TCATTGAC-A-T-GTTTCCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTCAGT-GTT-GGTTGGA-TTGACA-TCGGT-CCAATGT-TTGGACCGACATTGTT-GAA--C-AAT-G-TTGGGACATAGATCAT-TG-TAC-----CCAA--TGTT-G--AT-TCA-ATATC--T-A-TA-GAGTTCT-A-CTGCTC-----ACTGTT-GGCACAAACACACAGAACCAACG---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAGTAAATGGCTA--TA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAGGAACAATTAAATTCAAACTTT-AACTA----TT-NAGTTTACA-ACTTCAACAGT--------TTAAAAACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTTCTT---AGTAGGACT-ATGGATGCCAGCAGACCGC---ATAA---TTATGTAA-GTA--G--G--GCC-NTATA-TAT--NTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTCNCCTGTATAGTTATGNTCAT-CGGGTATCC-ATTTA-TTATT-GTTTATA-TCATCCG-CCCTTAA---------TAAA------TATTA--TTTGATA--A-TT--TA---TTGCTAA-------TT-CA-TTTTG-TTTTCAGTCCTGGGAGTT-TCG-CAG--A-AAAAGACTAT-TGCTCGTT---TA-GGACTA-AG--C--TAC-G-GATTCCAG-----A-GTTAT-G-TCG--C-ATGC----GA-CA--------GGGAAG--A--------GG--GGGGGGGGT---A---GAA----AGA----AGAAGAC-AGCGAGAG-AGGTG-GAAAAGAACC----CAAACA-GAGGAC-ACCGATGT-G-AATTTCAAACT--ATTCAA--ATA-AATTTGATGATT-GACGT-TT-TTGCA---ACA--TT-GGTCCA-GCG-TT-GGCACAA-G--TG-TCAAATCGGC-------T---------------------G-G-CATTGGGC----C----TACATTGGA-CCGACGTTG-AATTATCA-CTGTTGGATNACTTGGCGTTGGGCA-A---TACATT-GG-GCCAACANTGGGAGTANTATTGTA
Reference ( family-744 ) : GCAGTTGGCAGAACGGCATTGGGCC--GAC--ATT-GGCCGAC-GTTG---ATTAT----CACTGTGGGTCATTGACATCGTTCCAACATATTCGGGCAGGAATTATCTGACTGTGGGATC--AT-TGG-C-ATTGGG-C-CAACG-AC-ATTGGA-CC-GA-CGTTGTAA-TTATC-ACTGTGGGA-TCATTGAC-A-T-GTTTCCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTCAGT-GTT-GGTTGGA-TTGACA-TCGGT-CCAATGT-TTGGACCGACATTGTT-GAA--C-AAT-G-TTGGGACATAGATCAT-TG-TAC-----CCAA--TGTT-G--AT-TCA-ATATC--T-A-TA-GAGTTCT-A-CTGCTC-----ACTGTT-GGCACAAACACACAGAACCAACG---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAGTAAATGGCTA--TA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAGGAACAATTAAATTCAAACTTT-AACTA----TT-NAGTTTACA-ACTTCAACAGT--------TTAAAAACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTTCTT---AGTAGGACT-ATGGATGCCAGCAGACCGC---ATAA---TTATGTAA-GTA--G--G--GCC-NTATA-TAT--NTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTCNCCTGTATAGTTATGNTCAT-CGGGTATCC-ATTTA-TTATT-GTTTATA-TCATCCG-CCCTTAA---------TAAA------TATTA--TTTGATA--A-TT--TA---TTGCTAA-------TT-CA-TTTTG-TTTTCAGTCCTGGGAGTT-TCG-CAG--A-AAAAGACTAT-TGCTCGTT---TA-GGACTA-AG--C--TAC-G-GATTCCAG-----A-GTTAT-G-TCG--C-ATGC----GA-CA--------GGGAAG--A--------GG--GGGGGGGGT---A---GAA----AGA----AGAAGAC-AGCGAGAG-AGGTG-GAAAAGAACC----CAAACA-GAGGAC-ACCGATGT-G-AATTTCAAACT--ATTCAA--ATA-AATTTGATGATT-GACGT-TT-TTGCA---ACA--TT-GGTCCA-GCG-TT-GGCACAA-G--TG-TCAAATCAGC-------T---------------------G-G-CATTGGGC----C----TACATTGGA-CCGACGTTG-AATTATCA-CTGTTGGATNACTTGGCGTTGGGCA-A---TACATT-GG-GCCAACANTGGGAGTANTATTGTA
gi|1 : GCAGTTGGCAGAACGGCATTGGGCC--AAC--ATTCGACCGAC-ATTGCNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTATCTGACTGTGGGATTCAATGTGGACGATTGCTTC-CAATG-AC-ATCG-A-CC-GAATGTTGTAAGTTATCTACTGTGGGACTCATTGAC-A-T-GTTTTCAAAGT-CGGACCGA-CGTTGGAT-AT--TGGGTGTCAAGTCGTTTGGTTGGAGCTGACAATCGGT-CCAATGTATTGGACCGCTAT-GTT-GAA--C-AAT-GGTTGGGACATAGATCATGTGATAT-----CGAACTTGTT-G--AT-TCA-ATATC--T-A-TA-GAGATCT-A-CTGCTC-----ACTGTT-GGTACAAACACACAAAACCAGCA---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--TAAGTAAATGACTA--TA-CACAATTAATTTTTAAATCTGTT-CA-ATATTTT-GTGCATCAAGGATGGA----AAGGAACAAATAAATTCAAACTTT-AACAA----TT-CAGTTTACA-ACTTCAACAGT--------TCAAAGACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTTATG---AGTAGGACT-ATGGATGCCATCAGACCGC---ATAAACTTTATGTAA-GTA--G--G--GCC-CTATA-TAT--CTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGCCTATATAGTTATGTTC---TGGGTATCC-ATTTA-TTATT-GATTATA-TGAATCG-GCCTTAA---------TAAA------TATTA--TTTGATA--ATTT--TA---TTTCTAA-------TT-CA-TTTTGTTTTTCAGTCCTGGGAGTT-TCG-TAG--A-AAAAGA-TAT-TGCTCGTT---TA-AGACTA-AG--CAAAACAG-GATTCCAG-----A-GTT-T-GATTG--C-ATGC----GA-CA--------GGGAAG--A--------GG--GGGGGGAGC---A---GA-------A----AGAAGAC-CGCGAGAG-AGGTG-GAAAAGAACCATTGCAAACA-GAGGAC-ACAGATGT-G-ACTTTCAAACT--ATTCAAT-CTA-AATTTGATGATT-GACGT-TTATTACA---ACA--TT-GGT-CA-GCA-TT-GGCCCAA-G--TG-TCAAAT-AGC-------T---------------------GTG-CATTGGGC----C----TACATTGGG-CCAAC---A-AATTAAAAGATGTTGAATAACTTGGCGTTGGACACA---TACATT-GGCGCCAACAATAGGAGTATTATTGTA
gi|10 : ---ACA--TT-GGCCCA-ACG-TT-GACCCAT-GGTTG-GTAAATCGGCAACTTATC---------------------G-C-CGTTGG-CAGAAC----GGCATTGGA-CCGACATTGTAATTATCA-CTGTGGGATCA-TTGACATTGAGCA-AAATTACATT-GG-CCAAACAataaca
gi|11 : ccagatagcaagcttACTGTGGGATC--AT-TGA-T-ATTGGG-C-CAAC-----ATTGGA-CC-GA-CATTGTAA-TTATC-ACTGTGGGA-TCATTGACAA-T-G-TTCCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTCAGT-GTT-GG-TGGA-TTGGCA-TCGGT-CCAATG--TTGGACCGACATTGTT-GAA--C-------------C----ATCAT-TG-TA------CCAA--TGTT-G--AT-TCA-ATATT--T-ATTA-GAGTTCT-A-TTGCTC-----ACTGTT-GGCACAAACACAtaattttccaacatcggaccaaggagggagatatgtgatacatactaaaatgaacaatgtgttaaaagtaatcattgtc
gi|12 : ataatcC----GA-CA--------GGAAGG--G--------GG--GGGGGGAGT---AAGAGAAC---AGA----AGAAGAC-AGCGAGAG-AGGTGCGAAAAA---C----GAAACA-GAGGACAACCGATGT-GAAATTTCAAACT--A-TCAAAGATA-AATTTGATGATT--ACGT-TT-CTGCA---ACA--TT-GGTCCA-ACGATT-GGCACAATG--TT-TC-AAT--AC-------T---------------------G-G-CATTGGAC----C----AATATTGAA---AATGTTG-AAT
gi|13 : tatgcaCA-C-ATA-AGTTT-CT-GCA-CTC-TGACTTG-AAAGTCATCCCCGACCAACAG--ACTGTGATG-TCC-CTGTCGCAT-CACTACTATAGGATAGCT-TCT-TTTGA-G-CTTTTTCTT---AGTAG-------------CAGCAGA---C---A-AA---TTAT-TAAGGTATTGATG--ATT-GT-TA-TAT--ATTTTTTAATTTGATAAT-CTC-ATT
gi|14 : AC--ATT-GGCCAAC-GTTG---GTTAT--------GTGGGTAATT--CCCCGGCCCATCATATTCGGGCAG------TTTGGCAAAAAGAC-------GG-C-AATGGG-CGCGA-G-ACTATTGGGTCC-GA-CGTTG-AA-TTATC-ACTGTGGG--TCATTGAC-ATT-GTT--CAACtttaattaaaat
gi|15 : ccagatagcaagcttTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCC--------------TGTGATG-TCA-TTG--------------------T--CTCTCTGTCTAATATTTTTTTCTG---AGTAGGCCTAATGGATGCGAGCAGA--G----ATAA---TTTTGTAA-GTA------------TTG--------ATTTTTAAATTTGATATT-CTC-ATCAc
gi|16 : GCAGTTG-CAGA-CGGCATTGGACCAAAACAAATT-GACCTACAATTG----TTATATCCCACTGGTAGTCG-TAACATCA-TCCAAttctaaaattaa
gi|17 : gcaagcatcttacagtgtggcccaacgatggtatatggtatggtaatatccaggcaacagtatcTCAT-NN-NNN-----NNNN--NNNN-N--NN-NNN-NNNNN--N-N-NN-NAGTTCT-A-CTGCTC-----ACTGTT-GGCACAA--ACACAGAACCAACGTTGAAGAGAT----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTG
gi|2 : gCA-AC-AT-GGA-CCCGA-CATTGTAA-TTATC-AC-GTGGGA-TC-TCGAC-A-TTGTTTCCAACATACGGACCGA-CGTTGT-TTAT--T-----TTCAGT-GTT-GGT--GA-TGGACA--CGGT-CCAATGT-T-GGACCTA-ATTGTT-GAATCC-AAT-G-TTGGGACATAG-TCAT-TG-TAC-----CAAA--TGTT-G--ATATCA-AT------------GAGCTAT-ATCTGCTCGAGCAACTGTTTGGCACAAACACACAGAGCCAACG---------TTAAGGAGGTAAATA--------AAC-AACA---TTTTAAAGTAATTTTGATATATAATGAAGCCAAGTAAATGGCTA--TAACACAATTA-TTTTTAAATCTATTTCA-ATATTTTTGTGCATCAAAGATGGA----AAGAAACAATTAAATTCAAACTTT-AACTA----TTCCAGTTTACA-ACTTC-ACAGG--------TTTAAAACAATTGTAC--GATAGGCCTTCTCAAACTTGCCA-CAATA-ACTTTTCTGGCA-CTCGTGACT-GAAAAGTCTTCCCCG-CCAAGAAGAACTGTGATGTTCA-CTGTCGCAT-CACTC------GAT--CTCTCTGTCTGATG-CTTTTTCTT---AGTA-GACT-ATGGATGCCAGCAGACC-CTCAATAA---TTATGTAA-GTA-----G--GCC-CTATA-TATAATTTTTTTAATTTGATATTCCTCGATTAGCGATATTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTCTCCTGT-TAGTT-TGATCATGCGGGTATCCAATGTA---ATT--TTTATATTCCTCGGCCCCTTAA---------TAAATTACTGTATTAATTTTGATATGA-TTTCTACGTTCGCTAGTTAGATCTT-CATTTTTG-TTTCAAGTCCTGGGAGTTCTCGCCAG--ACAAAAGACTAT-GCCTCGTT---TA-GT-CTACAG--C--TAC-G-GATT-CAG-----ATGTTATCA-TCGGAC-AAGG----GA-AAGTAAAGGGGGGAAGGAG--------GG--GGGGGGGGTAAGA---GAA----ACAG---AGAAGAC-AGCGAGA--AGGTG-G-AAAGAACC----C-AACA-GAGGAC-ACCGATGT-G--ATTTCACACT--AATCAA--ATATAATTTGATGATTGGACGTATT-TTGC----ACATTTT-GGT-CA-GCA-TT-GGCACAA----TGTTCAAGT-AAC-------T---------------------G-GCCATTGGG-----C----TACATTGGGCCCAACATTA-AA---------ATTTGATAACTGCGTGTTGGGC--C---TACATTGGG-GCCAACAGTGAGAGTAATATTGTA
gi|22 : c---ATTAT----CACTGTGGGTCATTGACATTGTTCggcaca
gi|3 : aC-----AATGTT-GGTACAAACACACAAAACCAAGT---------T----------AA-AGAGGTGGAAAC-A-TA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAATAAAGGACTAGATA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAAGAATAATTAAACTCAAACTTT-AACTA----CT-GGGTTTACA-ATTACAGCAATATGAAAAATTAAAA-CAATT-TACATGGCAGGCCTTCTC-AACTTGCCT-C-TTA-ACTTCTCT-GCA-CTCGTGACT-G-AAAGTCATCCTCG-CCAAAAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-ATTATTCTG---AGTAGGCCT-ATTGACACCAGCAGA---C---ATAA---TTATGTAA----------------ATATA-TAT--G-ATTTTGGTTTGATATT-CTC-ATTaa
gi|3 : -ATTTA-TT-TT-GTTTATA-TCATCCG-CCCTTGA---------TAAA------T-TTA--TTTGATA--A-TT--TA---TTG-TAA--------T-AA-TTTTG-TTTTCAG---AAGGAGTT-T-G-CAGAAA-AAAAGACTA--TACTC-----------------G--C--TAC-G-GATTCC-G-----A-GT--T-G-TTG--C-ATCG----GA-CA--------GGGAAG--A--------AG--GAGGGGGGTAAGA---GAAC---AGA----AGAAGAC-AGCGAGAGAAAGTG-GAAGAGAA-T----CAAACA-GAGGAC-ACCGATGTGG-AATTTCAAACtttctaaaattaatataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcttatttattttgtttatatcatccgcccttgataaatttatttgataatttattgtaataattttgttttcagaaggagtttgcagaaaaaaagactatactcgctacggattccgagttgttgcatcggacagggaagaaggaggggggtaagagaacagaagaagacagcgagagaaagtggaagagaatcaaacagaggacaccgatgtggaatttcaaacaccatgaatacaata
gi|4 : caatgttggtacaaacacacaaaaccaagttaaagaggtggaaacatattttaaagtattttgatataatgaacaaataaaggactagatacacaattaatttttaaatctattcaatattttgtgcatcaaagatggaaaagaataattaaactcaaactttaactactgggtttacaattacagcaatatgaaaaattaaaacaatttacatggcaggccttctcaacttgcctcttaacttctctgcactcgtgactgaaagtcatcctcgccaaaaagaactgtgatgtcactgtcgcatcactagatctctctgtctgatgattattctgagtaggcctattgacaccagcagacataattatgtaaatatatatgattttggtttgatattctcatttttctaaaattaatataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcttGAGCT--TAC--AAT-GGCCCAC-GTTG---GGTAT----TG--GTTGGTAA-----ATCGAGC-AACATAGTCG---------CAT-------TGGCAGC--AT--GA-C-ATTGGG-C-CA-----C-ATTGGA-CC-GA-CGTTGTAA-TTATC-ACTGTGGGACTCATTGAC-A-T--TGTCCAACATTCGGACCGAACGTTGT-G-ATGAT-----TTCAGT-GTT-GGT-GGA-TTGACA-TCGGTGCCAATGT-T-GGACCGATATTGTTTGAA--CCAATTG-TTGGGACATAG-TCAT-TG-T-------CCAA--TGTTTGCCAT-TCACATATTCTT-A-TAAGAGTTCTTA-CTGCTCGAGC-ACTGTT-GGAACAAACACACAGAA-----G---------T----------AA-A--------AAC-A-CAACATTTTAAAGTA-TTT-GATATG--ATGAA--CAAGTAAATGGCTA--TA-CACAAT-GATTTTTAAATCTATT-CATATATTTT--TGCATTAAAAATGGA----ATGGAACAATTAATTCCTAACTTTTAACTAGGCCTA-TAGTTTACAGACTTCAAGAGT--------T-AAAAATAATT-TACAT-TTAGGC-TTCTC-AACTTGCCAAC-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGAAT-TCAGCTGTCGCATTCACTA------GAT--CTCTCTGTCTGATG-CTTTTTCTT---AGTAGAACT-ATGGATGCCAGCAGACCGCA--ATAA---TTATGTAA-GTT--G--G--CCC-CAATATTGT--GTTTTTTAATTTGATA-T-CTC-ACTAG-----------GCaccatgaatacaata
gi|5 : cagatagcaTCT-GCA-CTTTTAACT-G-AAAGTCATTCTCA-CTCAAAAGAACTGTGATG-TCA-CTGCCACAT-CACTA------CAT--ATCTCTGTCTGATGTTTTTTTCTTCTAAGTATACCT-ATGGCTACAAGAAG----------AA---GTATGTAA-GTATTG--A--ATTGATGCA-TAT--ATTTTT--ATTTGATAAT-TAC-ATCAG-----------ttattttaaataatt
gi|5 : CAT-CGGGCATCC-ATTTATTTATTCGTTTTTA-TCATCCG-TCTTTAAGGTTTTTATTAAC------TATCA--TTTTATT--A-TT--TA---TTGTCA---------T-CA-ATTTG--TTTCAG--ATGG--ATT-TTG-CAG--A-AATTGACTATATGATCATTAGCTACGGACTT-AGATG--TAT-GTAATATTAGTTAATA-GTGGT-T-TCG--CTATGCATCGAA-CA--------GGGAAA--AC-------GGTTGGCTGGGGC---A---GAA----GGATAAGAGAAGAC-AGCGAGAG-AAATG-GAAGAGAA-C----CAAACA-GAAGAA-ACCGActaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatacatcgggcatccatttatttattcgtttttatcatccgtctttaaggtttttattaactatcattttattatttattgtcatcaatttgtttcagatggattttgcagaaattgactatatgatcattagctacggacttagatgtatgtaatattagttaatagtggtttcgctatgcatcgaacagggaaaacggttggctggggcagaaggataagagaagacagcgagagaaatggaagagaaccaaacagaagaaaccgaggattaacactt
gi|6 : tctgcacttttaactgaaagtcattctcactcaaaagaactgtgatgtcactgccacatcactacatatctctgtctgatgtttttttcttctaagtatacctatggctacaagaagaagtatgtaagtattgaattgatgcatatatttttatttgataattacatcagctaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntata---ACA--TT-GGCCCA-ATG-TT-GGTATAT-GGTTG-GTAAATCGGC-------TACATATTGCAGTTGGCAGAACG-G-CATTGGAC----CAACATATATTGGA-CCGACACTG-AATTATCA-CTGTTGGATCAC-TGACATTGTTCC-A----ACATC-GG-ACCGACGTTGggattaacactt
gi|6 : gatagcaagcttGG-C-ATTGGA-C-CAACATAT-ATTGGA-CC-GA-CACTG-AA-TTATC-ACTGTTGGA-TCACTGAC-A-T-TGTTCCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTAAGT-GTT-GGT-GGA-TTGACA-TCGGT-CCAATGT-T-GGACCGACATTGTT-GAA--CTAAT-G-TTGGGACATA-ATCAT-TG-TACATGTACCAA--TGTT-G--GG-TCG-ATATC--TTA-TA-GATCTC--A-CTACTC-----GCTGTT-GGCACAAACACACAGAACCCACG---------T----------TA-A--------AG-----A---TTTTAAAGTA-TTTTGATATA--ATAAA--CAAATAAATGGCTA--TA-AACAATTAAGTTTTAAATCTATT-CA-GTATTTT-GTGCATCAAAGTTGGAATTTAAAGAGCAATTAAATTC-AACT------------TT-GAGTTTACA-ATTTCAACATT--------TTAAAAACGATT-TACATGTTAGGCCTTCTC-TACttattttaagtgttggtggattgacatcggtccaatgttggaccgacattgttgaactaatgttgggacataatcattgtacatgtaccaatgttgggtcgatatcttatagatctcactactcgctgttggcacaaacacacagaacccacgttaaagattttaaagtattttgatataataaacaaataaatggctataaacaattaagttttaaatctattcagtattttgtgcatcaaagttggaatttaaagagcaattaaattcaactttgagtttacaatttcaacattttaaaaacgatttacatgttaggccttctctac
gi|7 : gatagcaagcttacattggcccaatgttggtatatggttggtaaatcggctacatattgcagttggcagaacGG-C-AGTGG-----AACA-AC-ATTGGA-TC-GA-CATTGTAA-TTATC-ACTGTTGGA-TCATTGAC-A-T-TGTTCCAACAC-CGGACCGA-TGTTCA-T-AT--T-----TTCAGT-GTT-GG-TGGA-TTGACA-TCGGT-CCATTA--TTGGACCGACATTATT-GAA--CAAAT-G-TTGGAAAATA-ATCAT-TG-T-T-----TCAT--TGTT-G--GG-TCC-ATATC--T---TA-------T-A-CTGCTC-----ACTGTT-GGCACAGACACACAAAACCAACA---------T----------TA-A--------AGCGG-C---------GAGTA-TTTTAATATA--AGGAATTTAAATAAATGGCTA--TA-C
gi|8 : ttatattggccctatgttggtatatatgactggtaaatcggctgcagagcgcagttggcagaacAT-CGGGTATCC-TCGTA-TAATT-GGTTATA-TC--TCG-CCCTTAA---------TAAA------TATT---TTTGATA--A-TT--TA---TT--TAA-------TGACA-TTT-G-TTTGCAGTC-TGGGAGTT-GCG-CAG--A-AAAAGACTAT--GCTCGTT---TA-G-ACTA--G--C--TAC-G-GAT--CAG-----A-GTTAT-G------C-AT-C----GAGCA--------GGGAAG--AAGGGGGAAGG--GGGGGGGGT---AA--GAAGAGCAGA----AGAAGACTAGCGAGAG-AGGTG-GAAAAGAACC----AAAGCAGGAGGAC-ACCGATGT-G-AATTC--AACTAAATACAA--A-A-AATTTGATGATT-GATGT-TT-TTGCAACCACA--TTAGGTCCAGGCA-TTCGGCACAA----TG-T
gi|9 : tTTAGGCCTTCTC-AACTTGCCA-C-ATACACTTTTCT-GCAACTCGTG-CT-G-AAAGTC-TTCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------G-T--CTCTCTGTCTGATG-CTTTTTCTT---AGTAGGACT-ATGGATGCCAGCAGACCGC---ATAA---TTATGTAA-GTA--G--GAAGCC-GCCTA-TAT--TTTTTTTTATTTGATA-T-CTCTATTAG-----------GCCt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TCCCAGGTAGCAAGGGCACATTGGCCCAATGTTGGTTGTTTGGTTG
Unaligned ( gi|19 ): GATAACAAGCTTACATTAGCCCAATGTTGGGCCACTGTT
Unaligned ( gi|20 ): CCAGATAGCAATCTTACATTGGCCCAACGTTGG
Unaligned ( gi|21 ): TACTTAAGGGGATGATTAATAGTACGTCACGT
Unaligned ( gi|23 ): TTAAGGGGATGATTAATAGTACGTCACGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 11 11 11111111111111111111111111111111111111111111111111111111111111111111111111111111 1111 111 11 11111 1 11111111 22 2222 2 11 2222222 111111 22222 44444444444444444444444444444444 11111111 11 1111 1111 22222222 111111 3333333 4444444444444 1 77777777777777777777777777777777777777777777777777777777777777777777777777777777 1 1 111 1111 333333333 222222 111 11 11 111 11 33333333333 222 11 111 33333333333333333333 11 22222 333333333333333333333 22222222 33333333333 444444444444444444444 111111 1111 222222 11 1 1 1111 77777777777777777777777777777777777777777777777777777777777777 11 1 11111 1 3333333 1 11
lowQualScore : 5 5 88 11 8 1 8 44444444444444444444444444444444444444444444444444444444444444444444444444444444 6 6 2222 666 5 0 5 5 5 5 5 5 33 5 11111 3 6 888 66666666 6 6 22 6 6 6 0000 3 6 99 0 777 88 5 5 7777777 77 5 99999 5 888888 5 2 5 5 33333 5 55555555555555555555555555555555 11111111 5 99 88 99 6 0 0 8 8 8 7777 6 0 8 1 7777 99 8 0 99999999 3 0 8 0 6 6 6 6 5 5 5 5 0 5 0 5 5 5 444444 0 66 5 5 888 33 5 3333333 0 888 5 1111111111111 3 5 777 0 9 5 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333 1 5 5 1 000 8 0 0000 999 8 66 8 222222222 333333 0 111 11 8 11 444 33 99999999999 8 0 88 000 8 3 8 11 8 444 3 99999999999999999999 8 8 44 0 00000 8 000000000000000000000 6 44444444 66666666666 99 888888888888888888888 6 6 6 777777 6 6 8 88 4444 555555 22 0 0 4444 99 6 6 6 6 6 88888888888888888888888888888888888888888888888888888888888888 6 11 9 6 0 55555 1 5 00 7777777 0 00 1 1
lowQualScore : . . .. .. . . . ................................................................................ . . .... ... . . . . . . . . .. . ..... . . ... ........ . . .. . . . .... . . .. . ... .. . . ....... .. . ..... . ...... . . . . ..... . ................................ ........ . .. .. .. . . . . . . .... . . . . .... .. . . ........ . . . . . . . . . . . . . . . . . . ...... . .. . . ... .. . ....... . ... . ............. . . ... . . . . ................................................................................ . . . . ... . . .... ... . .. . ......... ...... . ... .. . .. ... .. ........... . . .. ... . . . .. . ... . .................... . . .. . ..... . ..................... . ........ ........... .. ..................... . . . ...... . . . .. .... ...... .. . . .... .. . . . . . .............................................................. . .. . . . ..... . . .. ....... . .. . .
lowQualScore : 0 5 33 00 0 0 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333 7 7 7777 333 7 1 7 7 7 0 0 0 22 0 66666 3 7 333 88888888 7 7 88 7 7 7 5555 7 7 22 0 555 22 7 7 6666666 99 7 66666 7 000000 7 4 7 7 11111 0 77777777777777777777777777777777 99999999 7 22 33 22 7 8 8 0 0 0 0000 0 8 0 0 0000 00 0 8 00000000 8 8 0 8 7 7 7 7 0 0 0 0 4 0 2 0 0 0 444444 1 99 0 0 888 22 0 1111111 1 888 0 2222222222222 9 0 999 4 8 0 0 22222222222222222222222222222222222222222222222222222222222222222222222222222222 0 5 5 0 222 0 6 6666 000 0 66 0 000000000 000000 8 888 00 0 00 000 22 22222222222 0 8 88 666 0 2 0 00 0 444 2 88888888888888888888 0 0 22 8 00000 0 333333333333333333333 7 22222222 00000000000 22 000000000000000000000 7 7 7 777777 7 7 0 88 5555 000000 55 0 0 9999 22 7 7 7 7 7 22222222222222222222222222222222222222222222222222222222222222 2 22 6 0 8 55555 0 0 55 0000000 0 22 0 0
consensus : GCAGTTGGCAGAACGGCATTGGGCC--AAC--ATT-GGCCNA-CGTTG-------GT-TAT----CG--GTTGGTAA-T--CATCGGNCCAACATATTCGGGCAGTATCTGGCTGTGGGANC--AT-TGG-C-ATTGGG-C-CAACG-AC-ATTGGA-CC-GA-CGTTGTAA-TTATC-ACTGTGGGA-TCATTGAC-A-T-GTTTCCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTCAGT-GTT-GGTTGGA-TTGACA-TCGGT-CCAATGT-TTGGACCGACATTGTT-GAA--C-AAT-G-TTGGGACATAGATCAT-TG-TAC-----CCAA--TGTT-G--AT-TCA-ATATC--T-A-TA-GAGTTCT-A-CTGCTC-----ACTGTT-GGCACAAACACACAGAACCAACG---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAGTAAATGGCTA--TA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAGGAACAATTAAATTCAAACTTT-AACTA----TT-NAGTTTACA-ACTTCAACAGT--------TTAAAAACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGGACTA-TGGATGCCAGCAGACCGC---ATAA---TTATGTAA-GTA--G--G--GCC-NTATA-TAT--NTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTCNCCTGTATAGTTATGNTCAT-CGGGTATCC-ATTTA-TTATT-GTTTATA-TCATCCG-CCCTTAA---------TAAA------TATTA--TTTGATA--A-TT--TA---TTGCTAA-------TT-CA-TTTTG-TTTTCAGTCCTGGGAGTT-TCG-CAG--A-AAAAGACTAT-TGCTCGTT---TA-GGACTA-AG--C--TAC-G-GATTCCAG-----A-GTTAT-G-TCG--C-ATGC----GA-CA--------GGGAAG--A--------GG--GGGGGGGGT---A---GAA----AGA----AGAAGAC-AGCGAGAG-AGGTG-GAAAAGAACC----CAAACA-GAGGAC-ACCGATGT-G-AATTTCAAACT--ATTCAA--ATA-AATTTGATGATT-GACGT-TT-TTGCA---ACA--TT-GGTCCA-GCG-TT-GGCACA----A-G--TG-TCAAATCGGC-------TG------G-CA-TTGG-------GCAG-----CNACATTGGA-CCGACGTTGTAATTATCA-CTGTTGGATNACTTGGCGTTGGGCA-A---TACATT-GG-GCCAACAGTGGGAGTANTATTGTA
Reference ( family-744 ) : GCAGTTGGCAGAACGGCATTGGGCC--AAC--ATT-GGCCNA-CGTTG-------GT-TAT----CGCTGTNGGTNATTGACATCGNTCCAACATANTCGGGCAGCATCTGACTGTGGGATC--AT-TGG-C-ATTGGG-C-CAACG-AC-ATTGGA-CC-GA-CGTTGTAA-TTATC-ACTGTGGGA-TCATTGAC-A-T-GTTTCCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTCAGT-GTT-GGTTGGA-TTGACA-TCGGT-CCAATGT-TTGGACCGACATTGTT-GAA--C-AAT-G-TTGGGACATAGATCAT-TG-TAC-----CCAA--TGTT-G--AT-TCA-ATATC--T-A-TA-GAGTTCT-A-CTGCTC-----ACTGTT-GGCACAAACACACAGAACCAACG---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAGTAAATGGCTA--TA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAGGAACAATTAAATTCAAACTTT-AACTA----TT-NAGTTTACA-ACTTCAACAGT--------TTAAAAACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGGACTA-TGGATGCCAGCAGACCGC---ATAA---TTATGTAA-GTA--G--G--GCC-NTATA-TAT--NTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTCNCCTGTATAGTTATGNTCAT-CGGGTATCC-ATTTA-TTATT-GTTTATA-TCATCCG-CCCTTAA---------TAAA------TATTA--TTTGATA--A-TT--TA---TTGCTAA-------TT-CA-TTTTG-TTTTCAGTCCTGGGAGTT-TCG-CAG--A-AAAAGACTAT-TGCTCGTT---TA-GGACTA-AG--C--TAC-G-GATTCCAG-----A-GTTAT-G-TCG--C-ATGC----GA-CA--------GGGAAG--A--------GG--GGGGGGGGT---A---GAA----AGA----AGAAGAC-AGCGAGAG-AGGTG-GAAAAGAACC----CAAACA-GAGGAC-ACCGATGT-G-AATTTCAAACT--ATTCAA--ATA-AATTTGATGATT-GACGT-TT-TTGCA---ACA--TT-GGTCCA-GCG-TT-GGCACA----A-G--TG-TCAAATCGGC-------TG------G-CA-TTGG-------GC-------CTACATTGGA-CCGACGTTG-AATTATCA-CTGTTGGATNACTTGGCGTTGGGCA-A---TACATT-GG-GCCAACANTGGGAGTANTATTGTA
gi|1 : GCAGTTGGCAGAACGGCATTGGGCC--AAC--ATTCGACCGA-CATTGCNNNNNNNN-NNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTATCTGACTGTGGGATTCAATGTGGACGATTGCTTC-CAATG-AC-ATCG-A-CC-GAATGTTGTAAGTTATCTACTGTGGGACTCATTGAC-A-T-GTTTTCAAAGT-CGGACCGA-CGTTGGAT-AT--TGGGTGTCAAGTCGTTTGGTTGGAGCTGACAATCGGT-CCAATGTATTGGACCGCTAT-GTT-GAA--C-AAT-GGTTGGGACATAGATCATGTGATAT-----CGAACTTGTT-G--AT-TCA-ATATC--T-A-TA-GAGATCT-A-CTGCTC-----ACTGTT-GGTACAAACACACAAAACCAGCA---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--TAAGTAAATGACTA--TA-CACAATTAATTTTTAAATCTGTT-CA-ATATTTT-GTGCATCAAGGATGGA----AAGGAACAAATAAATTCAAACTTT-AACAA----TT-CAGTTTACA-ACTTCAACAGT--------TCAAAGACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTT-ATG---AGTAGGACTA-TGGATGCCATCAGACCGC---ATAAACTTTATGTAA-GTA--G--G--GCC-CTATA-TAT--CTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGCCTATATAGTTATGTTC---TGGGTATCC-ATTTA-TTATT-GATTATA-TGAATCG-GCCTTAA---------TAAA------TATTA--TTTGATA--ATTT--TA---TTTCTAA-------TT-CA-TTTTGTTTTTCAGTCCTGGGAGTT-TCG-TAG--A-AAAAGA-TAT-TGCTCGTT---TA-AGACTA-AG--CAAAACAG-GATTCCAG-----A-GTT-T-GATTG--C-ATGC----GA-CA--------GGGAAG--A--------GG--GGGGGGAGC---A---GA-------A----AGAAGAC-CGCGAGAG-AGGTG-GAAAAGAACCATTGCAAACA-GAGGAC-ACAGATGT-G-ACTTTCAAACT--ATTCAAT-CTA-AATTTGATGATT-GACGT-TTATTACA---ACA--TT-GGT-CA-GCA-TT-GGCCCA----A-G--TG-TCAAAT-AGC-------TGT-----G-CA-TTGG-------GC-------CTACATTGGG-CCAAC---A-AATTAAAAGATGTTGAATAACTTGGCGTTGGACACA---TACATT-GGCGCCAACAATAGGAGTATTATTGTA
gi|10 : ---ACA--TT-GGCCCA-ACG-TT-GACCCA----T-GGTTG-GTAAATCGGCAACTTATCG------C-CG-TTGG--------CAGAA---CGGCATTGGA-CCGACATTGTAATTATCA-CTGTGGGATCA-TTGACATTGAGCA-AAATTACATT-GG-CCAAACAataaca
gi|11 : ccagatagcaagcttACTGTGGGATC--AT-TGA-T-ATTGGG-C-CAAC-----ATTGGA-CC-GA-CATTGTAA-TTATC-ACTGTGGGA-TCATTGACAA-T-G-TTCCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTCAGT-GTT-GG-TGGA-TTGGCA-TCGGT-CCAATG--TTGGACCGACATTGTT-GAA--C-------------C----ATCAT-TG-TA------CCAA--TGTT-G--AT-TCA-ATATT--T-ATTA-GAGTTCT-A-TTGCTC-----ACTGTT-GGCACAAACACAtaattttccaacatcggaccaaggagggagatatgtgatacatactaaaatgaacaatgtgttaaaagtaatcattgtc
gi|12 : ataatcC----GA-CA--------GGAAGG--G--------GG--GGGGGGAGT---AAGAGAAC---AGA----AGAAGAC-AGCGAGAG-AGGTGCGAAAAA---C----GAAACA-GAGGACAACCGATGT-GAAATTTCAAACT--A-TCAAAGATA-AATTTGATGATT--ACGT-TT-CTGCA---ACA--TT-GGTCCA-ACGATT-GGCACA----ATG--TT-TC-AAT--AC-------TG------G-CA-TTGG-------AC-------CAATATTGAA---AATGTTG-AAT
gi|13 : tatgcaCA-C-ATA-AGTTT-CT-GCA-CTC-TGACTTG-AAAGTCATCCCCGACCAACAG--ACTGTGATG-TCC-CTGTCGCAT-CACTACTATAGGATAGCT-TCT-TTTGA-G-CTTTTT-CTT---AGTAG-------------CAGCAGA---C---A-AA---TTAT-TAAGGTATTGATG--ATT-GT-TA-TAT--ATTTTTTAATTTGATAAT-CTC-ATT
gi|14 : AC--ATT-GGCCAA-CGTTG-------GT-TAT--------GTGGGTAATT--CCCCGGCCCATCATATTCGGGCAG--TTTGGCAAAAAGAC-------GG-C-AATGGG-CGCGA-G-ACTATTGGGTCC-GA-CGTTG-AA-TTATC-ACTGTGGG--TCATTGAC-ATT-GTT--CAACtttaattaaaat
gi|15 : ccagatagcaagcttTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCC--------------TGTGATG-TCA-TTGTC----------------------TCTCTGTCTAATA-TTTTTTTCTG---AGTAGGCCTAATGGATGCGAGCAGA--G----ATAA---TTTTGTAA-GTA------------TTG--------ATTTTTAAATTTGATATT-CTC-ATCAc
gi|16 : GCAGTTG-CAGA-CGGCATTGGACCAAAACAAATT-GACCTA-CAATT-------GT-TATATCCCACTGGTAGTCG-TAACATC-ATCCAAttctaaaattaa
gi|17 : gcaagcatcttacagtgtggcccaacgatggtatatggtatggtaatatccaggcaacagtatcTCAT-NN-NNN-----NNNN--NNNN-N--NN-NNN-NNNNN--N-N-NN-NAGTTCT-A-CTGCTC-----ACTGTT-GGCACAA--ACACAGAACCAACGTTGAAGAGAT----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTG
gi|2 : gCA-AC-AT-GGA-CCCGA-CATTGTAA-TTATC-AC-GTGGGA-TC-TCGAC-A-TTGTTTCCAACATACGGACCGA-CGTTGT-TTAT--T-----TTCAGT-GTT-GGT--GA-TGGACA--CGGT-CCAATGT-T-GGACCTA-ATTGTT-GAATCC-AAT-G-TTGGGACATAG-TCAT-TG-TAC-----CAAA--TGTT-G--ATATCA-AT------------GAGCTAT-ATCTGCTCGAGCAACTGTTTGGCACAAACACACAGAGCCAACG---------TTAAGGAGGTAAATA--------AAC-AACA---TTTTAAAGTAATTTTGATATATAATGAAGCCAAGTAAATGGCTA--TAACACAATTA-TTTTTAAATCTATTTCA-ATATTTTTGTGCATCAAAGATGGA----AAGAAACAATTAAATTCAAACTTT-AACTA----TTCCAGTTTACA-ACTTC-ACAGG--------TTTAAAACAATTGTAC--GATAGGCCTTCTCAAACTTGCCA-CAATA-ACTTTTCTGGCA-CTCGTGACT-GAAAAGTCTTCCCCG-CCAAGAAGAACTGTGATGTTCA-CTGTCGCAT-CACTC------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTA-GACTA-TGGATGCCAGCAGACC-CTCAATAA---TTATGTAA-GTA-----G--GCC-CTATA-TATAATTTTTTTAATTTGATATTCCTCGATTAGCGATATTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTCTCCTGT-TAGTT-TGATCATGCGGGTATCCAATGTA---ATT--TTTATATTCCTCGGCCCCTTAA---------TAAATTACTGTATTAATTTTGATATGA-TTTCTACGTTCGCTAGTTAGATCTT-CATTTTTG-TTTCAAGTCCTGGGAGTTCTCGCCAG--ACAAAAGACTAT-GCCTCGTT---TA-GT-CTACAG--C--TAC-G-GATT-CAG-----ATGTTATCA-TCGGAC-AAGG----GA-AAGTAAAGGGGGGAAGGAG--------GG--GGGGGGGGTAAGA---GAA----ACAG---AGAAGAC-AGCGAGA--AGGTG-G-AAAGAACC----C-AACA-GAGGAC-ACCGATGT-G--ATTTCACACT--AATCAA--ATATAATTTGATGATTGGACGTATT-TTGC----ACATTTT-GGT-CA-GCA-TT-GGCACA----A----TGTTCAAGT-AAC-------TG------GCCA-TTGG-------G--------CTACATTGGGCCCAACATTA-AA---------ATTTGATAACTGCGTGTTGGGC--C---TACATTGGG-GCCAACAGTGAGAGTAATATTGTA
gi|22 : cAA-TTATC-ACTGTGGG--TCATTGAC-ATT-GTTggcaca
gi|3 : C-----AATGTT-GGTACAAACACACAAAACCAAGT---------T----------AA-AGAGGTGGAAAC-A-TA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAATAAAGGACTAGATA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAAGAATAATTAAACTCAAACTTT-AACTA----CT-GGGTTTACA-ATTACAGCAATATGAAAAATTAAAA-CAATT-TACATGGCAGGCCTTCTC-AACTTGCCT-C-TTA-ACTTCTCT-GCA-CTCGTGACT-G-AAAGTCATCCTCG-CCAAAAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-ATTATT-CTG---AGTAGGCCTA-TTGACACCAGCAGA---C---ATAA---TTATGTAA----------------ATATA-TAT--G-ATTTTGGTTTGATATT-CTC-ATTcaa
gi|3 : -ATTTA-TT-TT-GTTTATA-TCATCCG-CCCTTGA---------TAAA------T-TTA--TTTGATA--A-TT--TA---TTG-TAA--------T-AA-TTTTG-TTTTCAG---AAGGAGTT-T-G-CAGAAA-AAAAGACTA--TACTC-----------------G--C--TAC-G-GATTCC-G-----A-GT--T-G-TTG--C-ATCG----GA-CA--------GGGAAG--A--------AG--GAGGGGGGTAAGA---GAAC---AGA----AGAAGAC-AGCGAGAGAAAGTG-GAAGAGAA-T----CAAACA-GAGGAC-ACCGATGTGG-AATTTCAAACtttctaaaattaatataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcttatttattttgtttatatcatccgcccttgataaatttatttgataatttattgtaataattttgttttcagaaggagtttgcagaaaaaaagactatactcgctacggattccgagttgttgcatcggacagggaagaaggaggggggtaagagaacagaagaagacagcgagagaaagtggaagagaatcaaacagaggacaccgatgtggaatttcaaacaccatgaatacaata
gi|4 : caatgttggtacaaacacacaaaaccaagttaaagaggtggaaacatattttaaagtattttgatataatgaacaaataaaggactagatacacaattaatttttaaatctattcaatattttgtgcatcaaagatggaaaagaataattaaactcaaactttaactactgggtttacaattacagcaatatgaaaaattaaaacaatttacatggcaggccttctcaacttgcctcttaacttctctgcactcgtgactgaaagtcatcctcgccaaaaagaactgtgatgtcactgtcgcatcactagatctctctgtctgatgattattctgagtaggcctattgacaccagcagacataattatgtaaatatatatgattttggtttgatattctcatttttctaaaattaatataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcttGAGCT--TAC--AAT-GGCCCA-CGTTG-------GG-TAT----TG--GTTGGTAA-----ATCGAGC-AACATAGTCG-----CAT-------TGGCAGC--AT--GA-C-ATTGGG-C-CA-----C-ATTGGA-CC-GA-CGTTGTAA-TTATC-ACTGTGGGACTCATTGAC-A-T--TGTCCAACATTCGGACCGAACGTTGT-G-ATGAT-----TTCAGT-GTT-GGT-GGA-TTGACA-TCGGTGCCAATGT-T-GGACCGATATTGTTTGAA--CCAATTG-TTGGGACATAG-TCAT-TG-T-------CCAA--TGTTTGCCAT-TCACATATTCTT-A-TAAGAGTTCTTA-CTGCTCGAGC-ACTGTT-GGAACAAACACACAGAA-----G---------T----------AA-A--------AAC-A-CAACATTTTAAAGTA-TTT-GATATG--ATGAA--CAAGTAAATGGCTA--TA-CACAAT-GATTTTTAAATCTATT-CATATATTTT--TGCATTAAAAATGGA----ATGGAACAATTAATTCCTAACTTTTAACTAGGCCTA-TAGTTTACAGACTTCAAGAGT--------T-AAAAATAATT-TACAT-TTAGGC-TTCTC-AACTTGCCAAC-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGAAT-TCAGCTGTCGCATTCACTA------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGAACTA-TGGATGCCAGCAGACCGCA--ATAA---TTATGTAA-GTT--G--G--CCC-CAATATTGT--GTTTTTTAATTTGATA-T-CTC-ACTAG-----------GCaccatgaatacaata
gi|5 : cagatagcaTCT-GCA-CTTTTAACT-G-AAAGTCATTCTCA-CTCAAAAGAACTGTGATG-TCA-CTGCCACAT-CACTA------CAT--ATCTCTGTCTGATGTTTTTTT-CTTCTAAGTATACCTA-TGGCTACAAGAAG----------AA---GTATGTAA-GTATTG--A--ATTGATGCA-TAT--ATTTTT--ATTTGATAAT-TAC-ATCAG-----------ttattttaaataatt
gi|5 : CAT-CGGGCATCC-ATTTATTTATTCGTTTTTA-TCATCCG-TCTTTAAGGTTTTTATTAAC------TATCA--TTTTATT--A-TT--TA---TTGTCA---------T-CA-ATTTG--TTTCAG--ATGG--ATT-TTG-CAG--A-AATTGACTATATGATCATTAGCTACGGACTT-AGATG--TAT-GTAATATTAGTTAATA-GTGGT-T-TCG--CTATGCATCGAA-CA--------GGGAAA--AC-------GGTTGGCTGGGGC---A---GAA----GGATAAGAGAAGAC-AGCGAGAG-AAATG-GAAGAGAA-C----CAAACA-GAAGAA-ACCGActaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatacatcgggcatccatttatttattcgtttttatcatccgtctttaaggtttttattaactatcattttattatttattgtcatcaatttgtttcagatggattttgcagaaattgactatatgatcattagctacggacttagatgtatgtaatattagttaatagtggtttcgctatgcatcgaacagggaaaacggttggctggggcagaaggataagagaagacagcgagagaaatggaagagaaccaaacagaagaaaccgaggattaacactt
gi|6 : tctgcacttttaactgaaagtcattctcactcaaaagaactgtgatgtcactgccacatcactacatatctctgtctgatgtttttttcttctaagtatacctatggctacaagaagaagtatgtaagtattgaattgatgcatatatttttatttgataattacatcagctaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntataAC--ATT-GGCCCAATGTTG-------GTATAT-----G--GTTGGTAA-----ATCGG--CTACATATT---GCAGT---TGGC----AGAAC------GG-C-ATTGGA-C-CAACATAT-ATTGGA-CC-GA-CACTG-AA-TTATC-ACTGTTGGA-TCACTGAC-A-T-TGTTCCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTAAGT-GTT-GGT-GGA-TTGACA-TCGGT-CCAATGT-T-GGACCGACATTGTT-GAA--CTAAT-G-TTGGGACATA-ATCAT-TG-TACATGTACCAA--TGTT-G--GG-TCG-ATATC--TTA-TA-GATCTC--A-CTACTC-----GCTGTT-GGCACAAACACACAGAACCCACG---------T----------TA-A--------AG-----A---TTTTAAAGTA-TTTTGATATA--ATAAA--CAAATAAATGGCTA--TA-AACAATTAAGTTTTAAATCTATT-CA-GTATTTT-GTGCATCAAAGTTGGAATTTAAAGAGCAATTAAATTC-AACT------------TT-GAGTTTACA-ATTTCAACATT--------TTAAAAACGATT-TACATGTTAGGCCTTCTC-TACggattaacactt
gi|7 : gatagcaagctt---ATA--TT-GGCCCT-ATG-TT-GGTATATATGA-C--TG-GTAAATCGGC-------TGCAGAGCG-CAGTTGGCAGAACGGCAGTGGAACAACATTGGA-TCGACATTGTAATTATCA-CTGTTGGATCA-TTGACATTGTTCC-A----ACACC-GG-ACCGA
gi|7 : ttGG-C-AGTGG-----AACA-AC-ATTGGA-TC-GA-CATTGTAA-TTATC-ACTGTTGGA-TCATTGAC-A-T-TGTTCCAACAC-CGGACCGA-TGTTCA-T-AT--T-----TTCAGT-GTT-GG-TGGA-TTGACA-TCGGT-CCATTA--TTGGACCGACATTATT-GAA--CAAAT-G-TTGGAAAATA-ATCAT-TG-T-T-----TCAT--TGTT-G--GG-TCC-ATATC--T---TA-------T-A-CTGCTC-----ACTGTT-GGCACAGACACACAAAACCAACA---------T----------TA-A--------AGCGG-C---------GAGTA-TTTTAATATA--AGGAATTTAAATAAATGGCTA--TA-Ctgttcatattttcagtgttggtggattgacatcggtccattattggaccgacattattgaacaaatgttggaaaataatcattgtttcattgttgggtccatatcttatactgctcactgttggcacagacacacaaaaccaacattaaagcggcgagtattttaatataaggaatttaaataaatggctatac
gi|8 : ttatattggccctatgttggtatatatgactggtaaatcggctgcagagcgcagttggcagaacAT-CGGGTATCC-TCGTA-TAATT-GGTTATA-TC--TCG-CCCTTAA---------TAAA------TATT---TTTGATA--A-TT--TA---TT--TAA-------TGACA-TTT-G-TTTGCAGTC-TGGGAGTT-GCG-CAG--A-AAAAGACTAT--GCTCGTT---TA-G-ACTA--G--C--TAC-G-GAT--CAG-----A-GTTAT-G------C-AT-C----GAGCA--------GGGAAG--AAGGGGGAAGG--GGGGGGGGT---AA--GAAGAGCAGA----AGAAGACTAGCGAGAG-AGGTG-GAAAAGAACC----AAAGCAGGAGGAC-ACCGATGT-G-AATTC--AACTAAATACAA--A-A-AATTTGATGATT-GATGT-TT-TTGCAACCACA--TTAGGTCCAGGCA-TTCGGCACA----A----TG-T
gi|9 : tTTAGGCCTTCTC-AACTTGCCA-C-ATACACTTTTCT-GCAACTCGTG-CT-G-AAAGTC-TTCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------G-T--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGGACTA-TGGATGCCAGCAGACCGC---ATAA---TTATGTAA-GTA--G--GAAGCC-GCCTA-TAT--TTTTTTTTATTTGATA-T-CTCTATTAG-----------GCCt
blockSeqs : . . AA AA . A A GTTATGTGGGTAATTCCCCGGCCCATCATATTCGGGCAGTTTGGCAAAAAGAC . . GCG CAT T T C . T . . AC A TTGT A A TT GAT . . T . . G TT C T TC C TG A . . ACATGTA . T CCAT C CTTA A T T T GAGCA T TTAAGGAGGTAAATA ACAACA A TA GC GA A T T T ATTT A T T GGCC CC G ATGAAAAA T G A A A C G A T A A T G T CTATAG AG T T CTA GC A CCCTCA . G TTGATGATTG G T AAT A C G CGATATTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN T . . A ATG A TTTA CGT T CT C GGTTTTTAT TTACTG AAT TG . TC CGT GC GTTAGATCTT T T TCC C C C AA C TAT G AGCTACGGACTTAGATG . T TC TTAAT T GGTTTCGCTATGCATCG G GTAAAGGG AAGGGGGAA TT AAGAAGAGCAGA T A C CC G A G AA AAAT AGATA GG A . AACC TT A C G A C TATGACTGGTAAATCGGCTGCAGAGCGCAGTTGGCAGAACGGCAGTGGAA G CC A T TCAC C C AAAATT G C G A
blockSeqs : . . . T . GGTATTGGTTGGTAAATCGAGCAACATAGTCGCATTGGCAGCAT . . GC CA . . . . T . . A . TTGT T . T T . . T . . . TT T . . T G G . . NN . . ATA . TAT . T . . GAGC . TTGAAGAGATAAA AACA . . TT . . . . . . A . T . G . . T . . . . . . . . . . . . . . . . . . GA . CCGCA . . TTGAATTGA A . A T . T AT . TAA GT . AT . . . A . . . . GT ATGA . T TC . T . . . TG A TAGTCTACAGC . . AT . . TATCATCGGACAAGG . . GAG . AAGAGAACAGA . . . CC . . . A AA ATAT G . . A . . C . . . TGGTTGGTAAATCGGCAACTTATCGCCGTTGGCAGAA A C G T TCAC A . CT . G
blockSeqs : . . C . GTATATGGTTGGTAAATCGGCTACATATTGCAGTTGGCAGAAC . . GC CA . . . . T . . A . TTGT . . G T . . T . . . TT C . . A G G . . AC . . AT . TTA . C . . . . TAAAGAGGTGGA ACA . . . . . . . . . T . T . T . . T . . . . . . . . . . . . . . . . . . GC . CCGC . . GGAAGCCG A . A T . . AT . TT GG . AT . . . A . . . . G AT . T A . C . . . T G TAGACTAGC . . T . . TGTTGCATCG . . AC . AAGAGAAACAG . . . C . . . A A AA . . . . . . C . . . ATGTTCAAGTAACTGGCCATTGGG T T A . . C . CA . A
blockSeqs : . . C . . . AC C . . . . T . . A . TTG . . T T . . T . . . TT C . . . G A . . A . . NN . NN . T . . . . TAAA ATA . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . AA . C . . GGCCCC A . G T . . . A T . . . . . . . . . . . T . . . . . . . . T . GC . . . . . TATGCATC . . G . AAGAGAACAGA . . . T . . . . . . C . . . ATGTTTCAATACTGGCATTGGAC A . A .
blockSeqs : . . . G . . . . . . . A . TTG . . T T . . T . . . TT . . . . . A . . T . . GG . T . C . . . . TTAA GGC . . . . . . . . . . . . . . . . . . . . . . AC . G . . GGCCC G . G A . . . . A . AGAAGGATAAG . . . C . . . . . . . .
blockSeqs : . . . . . . . . . . TG . . . . . GG . . . . . . . . TTAA A . . . . . . . . . . . . . . GA . C . . T C . A . . .
blockSeqs : . . . . TT . . . . . . . . . . . . . . . . . . . . A . . T . . .
blockSeqCons : GC** A* TTGT* T** T******* T* TT** G** A* ** T***** C****** *** GGCC********* TA** GT********* T* *** T** TAGCTAGC************ TATGCATCG************ AAGAGAACAGG********** C*****
originalCons : GCAGTTGGCAGAACGGCATTGGGCC--AAC--ATT-GGCCNA-CGTTG-------GT-TAT----CG--GTTGGTAA-T--CATCGGNCCAACATATTCGGGCAGTATCTGGCTGTGGGANC--AT-TGG-C-ATTGGG-C-CAACG-AC-ATTGGA-CC-GA-CGTTGTAA-TTATC-ACTGTGGGA-TCATTGAC-A-T-GTTTCCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTCAGT-GTT-GGTTGGA-TTGACA-TCGGT-CCAATGT-TTGGACCGACATTGTT-GAA--C-AAT-G-TTGGGACATAGATCAT-TG-TAC-----CCAA--TGTT-G--AT-TCA-ATATC--T-A-TA-GAGTTCT-A-CTGCTC-----ACTGTT-GGCACAAACACACAGAACCAACG---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAGTAAATGGCTA--TA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAGGAACAATTAAATTCAAACTTT-AACTA----TT-NAGTTTACA-ACTTCAACAGT--------TTAAAAACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGGACTA-TGGATGCCAGCAGACCGC---ATAA---TTATGTAA-GTA--G--G--GCC-NTATA-TAT--NTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTCNCCTGTATAGTTATGNTCAT-CGGGTATCC-ATTTA-TTATT-GTTTATA-TCATCCG-CCCTTAA---------TAAA------TATTA--TTTGATA--A-TT--TA---TTGCTAA-------TT-CA-TTTTG-TTTTCAGTCCTGGGAGTT-TCG-CAG--A-AAAAGACTAT-TGCTCGTT---TA-GGACTA-AG--C--TAC-G-GATTCCAG-----A-GTTAT-G-TCG--C-ATGC----GA-CA--------GGGAAG--A--------GG--GGGGGGGGT---A---GAA----AGA----AGAAGAC-AGCGAGAG-AGGTG-GAAAAGAACC----CAAACA-GAGGAC-ACCGATGT-G-AATTTCAAACT--ATTCAA--ATA-AATTTGATGATT-GACGT-TT-TTGCA---ACA--TT-GGTCCA-GCG-TT-GGCACA----A-G--TG-TCAAATCGGC-------TG------G-CA-TTGG-------GCAG-----CNACATTGGA-CCGACGTTGTAATTATCA-CTGTTGGATNACTTGGCGTTGGGCA-A---TACATT-GG-GCCAACAGTGGGAGTANTATTGTA
finalCons : GCAGTTGGCAGAACGGCATTGGGCC--AAC--ATT-GGCCNA-CGTTG-------GT-TAT----CG--GTTGGTAA-T--CATCGGNCCAACATATTCGGGCAGTATCTGGCTGTGGGANC--AT-TGG-C-ATTGGGC--CAACG-AC-ATTGGA-CC-GA-CGTTGTAA-TTATC-ACTGTGGGA-TCATTGAC-ATTGT-TTCCAACAT-CGGACCGA-CGTTGTT--ATT-------TTCAGT-GTT-GGT-GGA-TTGACA-TCGGT-CCAATGTT--GGACCGACATTGTT-GAA--C-AATG--TTGGGACATAA-TCAT-TG-TAC-----CCAA--TGTT-G--AT-TCA-ATATCT-----TA-GAGTTCT-A-CTGCTC-----ACTGTT-GGCACAAACACACAGAACCAACG---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAGTAAATGGCTA--TA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAGGAACAATTAAATTCAAACTTT-AACTA----TT-NAGTTTACA-ACTTCAACAGT--------TTAAAAACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGGACTA-TGGATGCCAGCAGAC------ATAA---TTATGTAA-GTAGGCC---------TATA-TAT--NTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTCNCCTGTATAGTTATGNTCAT-CGGGTATCC-ATTTATA--TT-GTTTATA-TCATCCG-CCCTTAA---------TAAA------TATTA--TTTGATA--A-TT--TA---TTGCTAGT---------CA-TTTTGT-TTTCAG---TGGGAGTT-TCG-CAG--A-AAAAGACTAT--GCTCGTTTAGCTAGC------------TAC-G-GATTCCAG-----A-GTTATGCATCG------------GA-CA--------GGGAAG--A--------GG--GGGGGGGGTAAGAGAACAGG----------AGAAGAC-AGCGAGAG-AGGTG-GAAAAGAAC-----CAAACA-GAGGAC-ACCGATGT-G-AATTTCAAACT--ATTCAA--ATA-AATTTGATGATT-GACGT-TT-TTGCA---ACA--TT-GGTCCA-GCG-TT-GGCACA----A-G--TG-TCAAATCGGC-------TG------G-CA-TTGG-------GCAG-----CNACATTGGA-CCGACGTTGTAATTATCA-CTGTTGGATNACTTGGCGTTGGGCA-A---TACATT-GG-GCCAACAGTGGGAGTANTATTGTA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TCCCAGGTAGCAAGGGCACATTGGCCCAATGTTGGTTGTTTGGTTG
Unaligned ( gi|19 ): GATAACAAGCTTACATTAGCCCAATGTTGGGCCACTGTT
Unaligned ( gi|20 ): CCAGATAGCAATCTTACATTGGCCCAACGTTGG
Unaligned ( gi|21 ): TACTTAAGGGGATGATTAATAGTACGTCACGT
Unaligned ( gi|23 ): TTAAGGGGATGATTAATAGTACGTCACGT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 11 1 1111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 2222222 11 1 1 11111111 2 3333333 11111 111111111111 1 22222 44444444444444444444444444444444 11111111 11 1111 1111 22222222 111111 333333333 5555555555555555555555 1 77777777777777777777777777777777777777777777777777777777777777777777777777777777 1 1 111 222222 333333333 222222 111 11 11 111 11 4444444444444444 444444 11 8888888888888888888888888888888888888888888888888888888 1111 1111 444444444444444 33333333 11111 1111 222222 11 1 1 1111 11 1 2222 5555555555555555 555555 11 11111 4444444444 444444 1 1
lowQualScore : 5 5 88 99 5 66 1 1111111111111111111111111111111111111111111111111111111111111111111111111111111111 5 5 11 5 4444444 5 5 5 5 3 4 4 4 33 8 1 5 888 66666666 6 6 6 6 6 6 99 3 6 99 0 777 6 6 6 1111111 99 6 00000 6 888888888888 4 1 5 33333 5 55555555555555555555555555555555 11111111 5 99 88 99 6 0 0 8 8 8 7777 6 0 8 1 7777 99 8 0 99999999 3 0 8 0 6 6 6 6 5 5 5 5 0 5 0 5 5 5 444444 0 66 5 5 888 33 5 666666666 0 888 5 6666666666666666666666 5 2 777 22 9 5 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333 1 5 5 1 000 8 0 444444 999 8 66 8 222222222 333333 0 111 11 8 11 444 33 0000000000000000 0 8 8 000000 8 3 8 8 11 8 7777777777777777777777777777777777777777777777777777777 1111 8 6666 2 111111111111111 33333333 6 99 6 6 1 77 6 6 6 66666 6 6 6 8 88 4444 555555 22 0 0 7777 11 8 0 8 8 8 0 9999 8 3 3333333333333333 333333 1 22 2 88888 4444444444 1 6 333333 3 3 1
lowQualScore : . . .. .. . .. . .................................................................................. . . .. . ....... . . . . . . . . .. . . . ... ........ . . . . . . .. . . .. . ... . . . ....... .. . ..... . ............ . . . ..... . ................................ ........ . .. .. .. . . . . . . .... . . . . .... .. . . ........ . . . . . . . . . . . . . . . . . . ...... . .. . . ... .. . ......... . ... . ...................... . . ... .. . . . ................................................................................ . . . . ... . . ...... ... . .. . ......... ...... . ... .. . .. ... .. ................ . . . ...... . . . . .. . ....................................................... .... . .... . ............... ........ . .. . . . .. . . . ..... . . . . .. .... ...... .. . . .... .. . . . . . . .... . . ................ ...... . .. . ..... .......... . . ...... . . .
lowQualScore : 0 5 33 22 7 77 4 1111111111111111111111111111111111111111111111111111111111111111111111111111111111 7 7 00 7 0000000 0 0 0 0 2 4 4 4 22 5 4 7 333 88888888 7 7 7 7 7 7 22 7 7 22 0 555 7 7 7 8888888 22 7 88888 7 555555555555 0 4 7 11111 0 77777777777777777777777777777777 99999999 7 22 33 22 7 8 8 0 0 0 0000 0 8 0 0 0000 00 0 8 00000000 8 8 0 8 7 7 7 7 0 0 0 0 4 0 2 0 0 0 444444 1 99 0 0 888 22 0 999999999 1 888 0 8888888888888888888888 0 2 999 44 8 0 0 22222222222222222222222222222222222222222222222222222222222222222222222222222222 0 5 5 0 222 0 6 000000 000 0 66 0 000000000 000000 8 888 00 0 00 000 22 8888888888888888 8 0 6 444444 0 2 0 0 00 0 0000000000000000000000000000000000000000000000000000000 4444 0 0000 5 777777777777777 33333333 7 22 7 7 0 33 7 7 7 77777 7 7 7 0 88 5555 000000 55 0 0 2222 00 0 0 0 0 0 6 0000 0 2 2222222222222222 000000 0 55 0 22222 3333333333 0 7 000000 3 3 0
consensus : GCAGTTGGCAGAACGGCATTGGGCC--AAC--ATT-GGCCC-A-CGTTG------------GTATAT---CGGT-TGGTAAT-CATCGGCCCAACA-TATTCG-GCAGT--TTGGCTG-GGGANC--AT--GG-C-ATTGGG-C-CAACG-AC--ATTGGA-CC-GA-C-GTTGTAA-T-TATC-ACTGTGGGA-TCATTGACATTGTTTCCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTCAGT-GTT-GGT-GGA-TTGACA-TCGGT-CCAATGT--TGGACCGACATTGTT-GAA--C-AAT-G-TTGGGACATA-ATCAT-TG-TAC-----CCAA--TGTT-G--AT-TCA-ATAT-C--T-TA---GAGNTCT-A-CTGCTC-----ACTGTT-GGCACAAACACACAGAACCAACG---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAGTAAATGGCTA--TA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAGGAACAATTAAATTCAAACTTT-AACTA----TT-NAGTTTACA-ACTTCAACAGT--------TTAAAAACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGGACTA-TGGATGCCAGCAGA---C-----ATAA---TTATGTAA-GTA--G------G--CCT--A-T--A-TAT--NTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTCNCCTGTATAGTTATGNTCAT-CGGGTATCC-ATTTA-T--A-TT-GTTTATA-TCATCCG-CCCTTAA---------TAAA------TATTA--TTTGATA--A-TT--TA---TTGCTAA-T--CA---------TTTTG-TTTTCAGTCCT--GGGAGTT-TCG-CAGA-AAAA--GACTA-T----------G-CT-CG--TTTA--GA-----------CTA-AGC--TA----C-GGATTCCAGA-GTT--A-TGCATCGGACA---------------GGGAAG--------AGGGG-GG--GGGGTAAG-AG-AACAGAAGAAGAC-AGCGAGAG-AGGTG-GAAAAGAAC-----CAAA-CA-GAGGAC-ACCGATGT-G-AATTTCAAACT--ATTCAA--ATA-AATTTGATGATT-GACGT-TT-TTGCA---ACA--TT-GGTCCA-GCG-TT-GGCACAA-G--TG-TCAAAT-AGC-------TG-G-CATTGGGC-G--CNACATTGGG-CCAACGTTG-AATTAT-A--TGT-GGATAACTTGGCGTTGGGCA-A---TACATT-GG-GCCAACAGTGGGAGTANTATTGTA
Reference ( family-744 ) : GCAGTTGGCAGAACGGCATTGGGCC--AAC--ATT-GGCCN-A-CGTTG------------GT-TAT---CGGT-TGGTAAT-CATCGGNCCAACA-TATTCGGGCAGTATCTGGCTGTGGGANC--AT-TGG-C-ATTGGG-C-CAACG-AC--ATTGGA-CC-GA-C-GTTGTAA-T-TATC-ACTGTGGGA-TCATTGACATTGTTTCCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTCAGT-GTT-GGT-GGA-TTGACA-TCGGT-CCAATGT--TGGACCGACATTGTT-GAA--C-AAT-G-TTGGGACATA-ATCAT-TG-TAC-----CCAA--TGTT-G--AT-TCA-ATAT-C--T-TA---GAGTTCT-A-CTGCTC-----ACTGTT-GGCACAAACACACAGAACCAACG---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAGTAAATGGCTA--TA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAGGAACAATTAAATTCAAACTTT-AACTA----TT-NAGTTTACA-ACTTCAACAGT--------TTAAAAACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGGACTA-TGGATGCCAGCAGA---C-----ATAA---TTATGTAA-GTA--G------G--CCT--A-T--A-TAT--NTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTCNCCTGTATAGTTATGNTCAT-CGGGTATCC-ATTTA-T--A-TT-GTTTATA-TCATCCG-CCCTTAA---------TAAA------TATTA--TTTGATA--A-TT--TA---TTGCTAG-T--CA---------TTTTG-TTTTCAG---T--GGGAGTT-TCG-CAGA-AAAA--GACTA-T----------G-CT-CG--TTTA--G------------CT--AGC--TA----C-GGATTCCAGA-GTT--A-TGCATCGGACA---------------GGGAAG--------AGGGG-GG--GGGGTAAG-AG-AACAGGAGAAGAC-AGCGAGAG-AGGTG-GAAAAGAAC-----CAAA-CA-GAGGAC-ACCGATGT-G-AATTTCAAACT--ATTCAA--ATA-AATTTGATGATT-GACGT-TT-TTGCA---ACA--TT-GGTCCA-GCG-TT-GGCACAA-G--TG-TCAAATCGGC-------TG-G-CATTGGGCAG--CNACATTGGA-CCGACGTTGTAATTATCA-CTGTTGGATNACTTGGCGTTGGGCA-A---TACATT-GG-GCCAACAGTGGGAGTANTATTGTA
gi|1 : GCAGTTGGCAGAACGGCATTGGGCC--AAC--ATTCGACCG-A-CATTGCNNNNNNNNNNNNN-NNN---NNNN-NNNNNNN-NNNNNNNNNNNNN-NNNNNNNGAATTATCTGACTGTGGGATTCAATGTGGACGATTGCTTC-CAATG-AC--ATCG-A-CC-GAAT-GTTGTAAGT-TATCTACTGTGGGACTCATTGACAT-GTTTTCAAAGT-CGGACCGA-CGTTGGAT-AT--TGGGTGTCAAGTCGTTTGGTTGGAGCTGACAATCGGT-CCAATGTATTGGACCGCTAT-GTT-GAA--C-AAT-GGTTGGGACATAGATCATGTGATAT-----CGAACTTGTT-G--AT-TCA-ATAT-C--TATA---GAGATCT-A-CTGCTC-----ACTGTT-GGTACAAACACACAAAACCAGCA---------T----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGATATA--ATGAA--TAAGTAAATGACTA--TA-CACAATTAATTTTTAAATCTGTT-CA-ATATTTT-GTGCATCAAGGATGGA----AAGGAACAAATAAATTCAAACTTT-AACAA----TT-CAGTTTACA-ACTTCAACAGT--------TCAAAGACAATT-TACATGTTAGGCCTTCTC-AACTTGCCA-C-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-CTTTTT-ATG---AGTAGGACTA-TGGATGCCATCAGACCGC-----ATAAACTTTATGTAA-GTA--G------GGCCCT--A-T--A-TAT--CTTTTTTAATTTGATATT-CTC-ATTAG-----------GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGCCTATATAGTTATGTTC---TGGGTATCC-ATTTATT--A-TT-GATTATA-TGAATCG-GCCTTAA---------TAAA------TATTA--TTTGATA--ATTT--TA---TTTCTAATT--CA---------TTTTGTTTTTCAGTCCT--GGGAGTT-TCG-TAGA-AAAA--GA-TATT----------G-CT-CG--TTTAAGA------------CTA-AGCAAAA----CAGGATTCCAGA-GTTTGATTGCATGCGACA---------------GGGAAG--------AGGGG-GG--GGAGC----AG-AA----AGAAGAC-CGCGAGAG-AGGTG-GAAAAGAACCATTGCAAA-CA-GAGGAC-ACAGATGT-G-ACTTTCAAACT--ATTCAAT-CTA-AATTTGATGATT-GACGT-TTATTACA---ACA--TT-GGT-CA-GCA-TT-GGCCCAA-G--TG-TCAAAT-AGC-------TGTG-CATTGGGC----CTACATTGGG-CCAACA----AATTAAAAGATGTTGAATAACTTGGCGTTGGACACA---TACATT-GGCGCCAACAATAGGAGTATTATTGTA
gi|10 : ---ACA--TT-GGCCCA-ACG-TT-GACCCAT-GGTTG-GTAAATCGGCAACTTATCG-C-CGTTGG-CAGAACGGCATTGGA-CCGACATTGTAATTATCA-CTGTGGGATCA-TTGACATTGAGCA-AAATTACATT-GG-CCAAACAataaca
gi|10 : ccagatagcaagcttTTTCCAACAT-CGGACCAA-taattttccaacatcggaccaaggagggagatatgtgatacatactaaaatgaacaatgtgttaaaagtaatcattgtc
gi|11 : ccagatagcaagcttacattggcccaacgttgacccatggttggtaaatcggcaacttatcgccgttggcagaacggcattggaccgacattgtaattatcactgtgggatcattgacattgagcaaaattacattggccaaacataatCTGTGGGATC--AT-TGA-T-ATTGGG-C-CAAC------ATTGGA-CC-GA-C-ATTGTAA-T-TATC-ACTGTGGGA-TCATTGACAATGTT-CCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTCAGT-GTT-GGT-GGA-TTGGCA-TCGGT-CCAATGT--TGGACCGACATTGTT-GAA--C-------------C----ATCAT-TG-TA------CCAA--TGTT-G--AT-TCA-ATAT-TTAT-TA---GAGTTCT-A-TTGCTC-----ACTGTT-GGCACAAACACAggagggagatatgtgatacatactaaaatgaacaatgtgttaaaagtaatcattgtc
gi|12 : ataatcaT--A-TGCAC--GACA---------------GGAAGG--------GGGGG-GG--GGAGTAAG-AG-AACAGAAGAAGAC-AGCGAGAG-AGGTGCGAAA--AAC-----GAAA-CA-GAGGACAACCGATGT-GAAATTTCAAACT--A-TCAAAGATA-AATTTGATGATT--ACGT-TT-CTGCA---ACA--TT-GGTCCA-ACGATT-GGCACAATG--TT-TC-AAT--AC-------TG-G-CATTGGAC----CAATATTGAA---AATGTTG-AAT
gi|13 : CA-C-ATA-AGTTT-CT-GCA-CTC-TGACTTG-AAAGTCATCCCCGACCAACAG--ACTGTGATG-TCC-CTGTCGCAT-CACTACTATAGGATAGCT-TCT-TTTGA-G-CTTTTT-CTT---AGTAG-------------CAGCAGA---C-----A-AA---TTAT-TAAGGTATTGAT----G--ATT--GTT--A-TAT--ATTTTTTAATTTGATAAT-CTC-ATT
gi|14 : AC--ATT-GGCCA-A-CGTTG------------GT-TAT-----GT-GGGTAATTCCCCGGCCCATCA-TATTCGGGCAGT--TTGGCAAAAAGAC-------GG-C-AATGGG-CGCGA-G-ACT-ATTGGGTCC-GA-C-GTTG-AA-T-TATC-ACTGTGGG--TCATTGACATTGTT--CAACtttaattaaaat
gi|15 : ccagatagcaagcttTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCC--------------TGTGATG-TCA-TTGTC----------------------TCTCTGTCTAATA-TTTTTTTCTG---AGTAGGCCTAATGGATGCGAGCAGA---G-----ATAA---TTTTGTAA-GTA------------------------TTG--ATTTTTAAATTTGATATT-CTC-ATCAc
gi|16 : T-GGCCC-AACGATG------------GTATAT----GGTATGGTAAT--ATCCAGGCAACAGTATC---GCAGT-------TGCAG--AC------GG-C-ATTGGA-C-CAA-A-ACAAATT-GA-CC-TA-CAATTGTTA-TATCCC-ACTGttctaaaattaa
gi|16 : gcaagcatcttacagtgGCAGTTG-CAGA-CGGCATTGGACCAAAACAAATT-GACCT-A-CAATT------------GT-TATATCCCAC-TGGTAGT-CGTgtagtcgtaacatcatccaa
gi|17 : gcaagcatcttacagtgtggcccaacgatggtatatggtatggtaatatccaggcaacagtatcAGTTCT-A-CTGCTC-----ACTGTT-GGCACAA--ACACAGAACCAACGTTGAAGAGAT----------AA-A--------AAC-A-CA---TTTTAAAGTA-TTTTGaacatcatccaa
gi|2 : gtcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCA-AC--AT-GGA-CCCGA-C-ATTGTAA-T-TATC-AC-GTGGGA-TC-TCGACATTGTTTCCAACATACGGACCGA-CGTTGT-TTAT--T-----TTCAGT-GTT-GGT-G-A-TGGACA--CGGT-CCAATGT--TGGACCTA-ATTGTT-GAATCC-AAT-G-TTGGGACATA-GTCAT-TG-TAC-----CAAA--TGTT-G--ATATCA-AT-------------GAGCTAT-ATCTGCTCGAGCAACTGTTTGGCACAAACACACAGAGCCAACG---------TTAAGGAGGTAAATA--------AAC-AACA---TTTTAAAGTAATTTTGATATATAATGAAGCCAAGTAAATGGCTA--TAACACAATTA-TTTTTAAATCTATTTCA-ATATTTTTGTGCATCAAAGATGGA----AAGAAACAATTAAATTCAAACTTT-AACTA----TTCCAGTTTACA-ACTTC-ACAGG--------TTTAAAACAATTGTAC--GATAGGCCTTCTCAAACTTGCCA-CAATA-ACTTTTCTGGCA-CTCGTGACT-GAAAAGTCTTCCCCG-CCAAGAAGAACTGTGATGTTCA-CTGTCGCAT-CACTC------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTA-GACTA-TGGATGCCAGCAGA---CCCTCAATAA---TTATGTAA-GTA--G------GC-CCT--A-T--A-TATAATTTTTTTAATTTGATATTCCTCGATTAGCGATATTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTCTCCTGT-TAGTT-TGATCATGCGGGTATCCAATGTA----A-TT--TTTATATTCCTCGGCCCCTTAA---------TAAATTACTGTATTAATTTTGATATGA-TTTCTACGTTCGCTAG-T--TAGATCTTCATTTTTG-TTTCAAGTCCT--GGGAGTTCTCGCCAGACAAAA--GACTA-T----------GCCT-CG--TTTA--GT-----------CTACAGC--TA----C-GGATT-CAGATGTT--A-T-CATCGGACAAGGGAAAGTAAAGGGGGGAAGGA------GGGGG-GG--GGGGTAAG-AGAAACA-GAGAAGAC-AGCGAGA--AGGTG-G-AAAGAAC-----CCAA-CA-GAGGAC-ACCGATGT-G--ATTTCACACT--AATCAA--ATATAATTTGATGATTGGACGTATT-TTGC----ACATTTT-GGT-CA-GCA-TT-GGCACAA----TGTTCAAGT-AAC-------TG-GCCATTGG---G--CTACATTGGGCCCAACATTAAAATT-T---------GATAACTGCGTGTTGGGC--C---TACATTGGG-GCCAACAGTGAGAGTAATATTGTA
gi|22 : cAA-T-TATC-ACTGTGGG--TCATTGACATTGTTggcaca
gi|3 : C-----AATGTT-GGTACAAACACACAAAACCAAGT---------T----------AA-AGAGGTGGAAAC-A-TA---TTTTAAAGTA-TTTTGATATA--ATGAA--CAAATAAAGGACTAGATA-CACAATTAATTTTTAAATCTATT-CA-ATATTTT-GTGCATCAAAGATGGA----AAAGAATAATTAAACTCAAACTTT-AACTA----CT-GGGTTTACA-ATTACAGCAATATGAAAAATTAAAA-CAATT-TACATGGCAGGCCTTCTC-AACTTGCCT-C-TTA-ACTTCTCT-GCA-CTCGTGACT-G-AAAGTCATCCTCG-CCAAAAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------GAT--CTCTCTGTCTGATG-ATTATT-CTG---AGTAGGCCTA-TTGACACCAGCAGA---C-----ATAA---TTATGTAA-A----------------T--A-T--A-TAT--G-ATTTTGGTTTGATATT-CTC-ATTcaa
gi|3 : -ATTTA-T--T-TT-GTTTATA-TCATCCG-CCCTTGA---------TAAA------T-TTA--TTTGATA--A-TT--TA---TTG-TAA-T--AA---------TTTTG-TTTTCAG---A--AGGAGTT-T-G-CAGA-AAAAAAGACTA-T----------A-CT-CG---------------------------C--TA----C-GGATTCC-GA-GTT--GTTGCATCGGACA---------------GGGAAG--------AAGGA-GG--GGGGTAAG-AG-AACAGAAGAAGAC-AGCGAGAGAAAGTG-GAAGAGAAT-----CAAA-CA-GAGGAC-ACCGATGTGG-AATTTCAAACtttctaaaattaatataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcttatttattttgtttatatcatccgcccttgataaatttatttgataatttattgtaataattttgttttcagaaggagtttgcagaaaaaaagactatactcgctacggattccgagttgttgcatcggacagggaagaaggaggggggtaagagaacagaagaagacagcgagagaaagtggaagagaatcaaacagaggacaccgatgtggaatttcaaacaccatgaatacaata
gi|4 : caatgttggtacaaacacacaaaaccaagttaaagaggtggaaacatattttaaagtattttgatataatgaacaaataaaggactagatacacaattaatttttaaatctattcaatattttgtgcatcaaagatggaaaagaataattaaactcaaactttaactactgggtttacaattacagcaatatgaaaaattaaaacaatttacatggcaggccttctcaacttgcctcttaacttctctgcactcgtgactgaaagtcatcctcgccaaaaagaactgtgatgtcactgtcgcatcactagatctctctgtctgatgattattctgagtaggcctattgacaccagcagacataattatgtaaatatatatgattttggtttgatattctcatttttctaaaattaatataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcttGAGCT--TAC--AAT-GGCCC-A-CGTTG------------GG-TAT---TGGT-TGGTAA---ATCGAGC-AACA-TAGTCG--CA----TTGGC------AGC--AT--GA-C-ATTGGG-C-CA-----C--ATTGGA-CC-GA-C-GTTGTAA-T-TATC-ACTGTGGGACTCATTGACATTGT--CCAACATTCGGACCGAACGTTGT-G-ATGAT-----TTCAGT-GTT-GGT-GGA-TTGACA-TCGGTGCCAATGT--TGGACCGATATTGTTTGAA--CCAATTG-TTGGGACATA-GTCAT-TG-T-------CCAA--TGTTTGCCAT-TCACATATTC--T-TATAAGAGTTCTTA-CTGCTCGAGC-ACTGTT-GGAACAAACACACAGAA-----G---------T----------AA-A--------AAC-A-CAACATTTTAAAGTA-TTT-GATATG--ATGAA--CAAGTAAATGGCTA--TA-CACAAT-GATTTTTAAATCTATT-CATATATTTT--TGCATTAAAAATGGA----ATGGAACAATTAATTCCTAACTTTTAACTAGGCCTA-TAGTTTACAGACTTCAAGAGT--------T-AAAAATAATT-TACAT-TTAGGC-TTCTC-AACTTGCCAAC-ATA-ACTTTTCT-GCA-CTCGTGACT-G-AAAGTCATCCCCG-CCAAGAAGAACTGTGAAT-TCAGCTGTCGCATTCACTA------GAT--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGAACTA-TGGATGCCAGCAGA---CCGCA-ATAA---TTATGTAA-GTT--G------G--CCCCAA-T--ATTGT--GTTTTTTAATTTGATA-T-CTC-ACTAG-----------GCaccatgaatacaata
gi|5 : cagatagcaTCT-GCA-CTTTTAACT-G-AAAGTCATTCTCA-CTCAAAAGAACTGTGATG-TCA-CTGCCACAT-CACTA------CAT--ATCTCTGTCTGATGTTTTTTT-CTTCTAAGTATACCTA-TGGCTACAAGAAG------------AA---GTATGTAA-GTATTG------A--ATTG-A-TGCA-TAT--ATTTTT--ATTTGATAAT-TAC-ATCAG-----------ttattttaaataatt
gi|5 : CAT-CGGGCATCC-ATTTA-TTTA-TTCGTTTTTA-TCATCCG-TCTTTAAGGTTTTTATTAAC------TATCA--TTTTATT--A-TT--TA---TTGTCA--T--CA---------ATTTG-TTT-CAG---A--TGGA-TT-TTG-CAGA-AATT--GACTA-TATGATCATTAG-CTACGGACTTA--GATGTATGTAATATT--AGT--TAATAGT-GGTTTC-----GCT--A-TGCATCGAACA---------------GGGAAA--------ACGGTTGGCTGGGGCAGA-AG-GATAAGAGAAGAC-AGCGAGAG-AAATG-GAAGAGAAC-----CAAA-CA-GAAGAA-ACCGActaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatacatcgggcatccatttatttattcgtttttatcatccgtctttaaggtttttattaactatcattttattatttattgtcatcaatttgtttcagatggattttgcagaaattgactatatgatcattagctacggacttagatgtatgtaatattagttaatagtggtttcgctatgcatcgaacagggaaaacggttggctggggcagaaggataagagaagacagcgagagaaatggaagagaaccaaacagaagaaaccgaggattaacactt
gi|6 : tctgcacttttaactgaaagtcattctcactcaaaagaactgtgatgtcactgccacatcactacatatctctgtctgatgtttttttcttctaagtatacctatggctacaagaagaagtatgtaagtattgaattgatgcatatatttttatttgataattacatcagctaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntataAC--ATT-GGCCC-AATGTTG------------GTATAT----GGT-TGGTAA---ATCGGCT--ACA-TATT---GCAGT---TGGC----AGAAC------GG-C-ATTGGA-C-CAACATAT--ATTGGA-CC-GA-C-ACTG-AA-T-TATC-ACTGTTGGA-TCACTGACATTGTT-CCAACAT-CGGACCGA-CGTTGT-T-AT--T-----TTAAGT-GTT-GGT-GGA-TTGACA-TCGGT-CCAATGT--TGGACCGACATTGTT-GAA--CTAAT-G-TTGGGACATA-ATCAT-TG-TACATGTACCAA--TGTT-G--GG-TCG-ATAT-C--T-TA---TAGATCTCA-CTACTC-----GCTGTT-GGCACAAACACACAGAACCCACG---------T----------TA-A--------AG-----A---TTTTAAAGTA-TTTTGATATA--ATAAA--CAAATAAATGGCTA--TA-AACAATTAAGTTTTAAATCTATT-CA-GTATTTT-GTGCATCAAAGTTGGAATTTAAAGAGCAATTAAATTC-AACT------------TT-GAGTTTACA-ATTTCAACATT--------TTAAAAACGATT-TACATGTTAGGCCTTCTC-TACggattaacactt
gi|7 : gatagcaagcttAT--ATT-GGCCCTA-TGTTG------------GTATATA--TGAC-TGGTAA---ATCGGCT--GCA-GA---GCGCAGT---TGGC----AGAAC------GG-C-AGTGG-----AACA-AC--ATTGGA-TC-GA-C-ATTGTAA-T-TATC-ACTGTTGGA-TCATTGACATTGTT-CCAACAC-CGGACCGA-TGTTCA-T-AT--T-----TTCAGT-GTT-GGT-GGA-TTGACA-TCGGT-CCATTAT--TGGACCGACATTATT-GAA--CAAAT-G-TTGGAAAATA-ATCAT-TG-T-T-----TCAT--TGTT-G--GG-TCC-ATAT-C--T-TA---------T-A-CTGCTC-----ACTGTT-GGCACAGACACACAAAACCAACA---------T----------TA-A--------AGCGG-C---------GAGTA-TTTTAATATA--AGGAATTTAAATAAATGGCTA--TA-C
gi|8 : ttAT-CGGGTATCC-TCGTA-T--AATT-GGTTATA-TC--TCG-CCCTTAA---------TAAA------TATT---TTTGATA--A-TT--TA---TT--TAA-TGACA---------TTT-G-TTTGCAG---TCTGGGAGTT-GCG-CAGA-AAAA--GACTA-T----------G-CT-CG--TTTA--GA-----------CT--AGC--TA----C-GGAT--CAGA-GTT--A-TGCATCGAGCA---------------GGGAAGAAGGGGGAAGGGG-GG--GGGGTAAGAAG-AGCAGAAGAAGACTAGCGAGAG-AGGTG-GAAAAGAAC-----CAAAGCAGGAGGAC-ACCGATGT-G-AATTC--AACTAAATACAA--A-A-AATTTGATGATT-GATGT-TT-TTGCAACCACA--TTAGGTCCAGGCA-TTCGGCACAA----TG-T
gi|9 : tTTAGGCCTTCTC-AACTTGCCA-C-ATACACTTTTCT-GCAACTCGTG-CT-G-AAAGTC-TTCCCG-CCAAGAAGAACTGTGATG-TCA-CTGTCGCAT-CACTA------G-T--CTCTCTGTCTGATG-CTTTTT-CTT---AGTAGGACTA-TGGATGCCAGCAGACCGC-----ATAA---TTATGTAA-GTA--GGAAGCCG--CCT--A-T--A-T-T--TTTTTTT-ATTTGATA-T-CTCTATTAG-----------GCCt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TCCCAGGTAGCAAGGGCACATTGGCCCAATGTTGGTTGTTTGGTTG
Unaligned ( gi|19 ): GATAACAAGCTTACATTAGCCCAATGTTGGGCCACTGTT
Unaligned ( gi|20 ): CCAGATAGCAATCTTACATTGGCCCAACGTTGG
Unaligned ( gi|21 ): TACTTAAGGGGATGATTAATAGTACGTCACGT
Unaligned ( gi|23 ): TTAAGGGGATGATTAATAGTACGTCACGT