lowQualScore : 1 33333333333333333333333 1111111111111 11111 111111 11111 11 111111 22222222 1 111111 1 1111 222 9999999 1 777777777777777777777777777777777777777777777777777777777777777777777 1 11 1 444444444444444444 7777777777777777777777777 4444444444444444444444 1 11 2222 2222222222 1 1 1 1 11 2222222 1 3333 1 11 1 111 3333 11 1 111 1111 111 5555555555 1 1
lowQualScore : 6 4 0 66 66 5 1 8 66 9999 4 4 4 4 66666666666666666666666 4 2 4 4 66 888 66 4 4 4 4 4 1 4 6 9999999999999 4 4 777 4 4 11111 1 222222 66 4 4 11111 4 77777 4 999 4 22 4 22 222222 4 4 88 44444444 4 9999 4 4 9 4 666666 2 9 0 5 0000 555 5 6 4444444 3 5 0 4 333333333333333333333333333333333333333333333333333333333333333333333 0 3 2 22 0 555555555555555555 2 2 2222222222222222222222222 6 0 0 666 0000000000000000000000 1 6 3 4 0 44 99 6 1111 3 1 6 6 5555555555 99 99 777 5 0 0 0 5 3 3 0 3 0 22 2 0 22 2222222 3 2 3 0 1111 0 0 33 0 777 3 1111 0 4 3 3 33 0 777 4444 777 4 2222222222 0 0
lowQualScore : . . . .. .. . . . .. .... . . . . ....................... . . . . .. ... .. . . . . . . . . ............. . . ... . . ..... . ...... .. . . ..... . ..... . ... . .. . .. ...... . . .. ........ . .... . . . . ...... . . . . .... ... . . ....... . . . . ..................................................................... . . . .. . .................. . . ......................... . . . ... ...................... . . . . . .. .. . .... . . . . .......... .. .. ... . . . . . . . . . . .. . . .. ....... . . . . .... . . .. . ... . .... . . . . .. . ... .... ... . .......... . .
lowQualScore : 0 4 7 11 11 4 9 9 22 4444 4 4 4 4 88888888888888888888888 4 1 4 4 11 111 44 4 0 1 0 0 5 0 0 5555555555555 4 4 888 4 4 11111 1 888888 11 4 4 11111 4 88888 4 222 4 22 4 66 888888 2 0 33 99999999 4 8888 4 4 3 4 111111 2 4 0 0 6666 777 7 7 3333333 5 0 8 6 555555555555555555555555555555555555555555555555555555555555555555555 0 2 0 55 0 222222222222222222 5 5 5555555555555555555555555 7 8 8 888 7777777777777777777777 7 7 3 6 6 22 22 7 0000 3 0 7 7 2222222222 22 22 222 6 6 0 8 6 2 2 0 2 0 88 5 0 55 2222222 5 5 2 0 2222 0 2 88 5 555 2 8888 2 5 2 2 88 0 555 8888 555 2 0000000000 0 0
consensus : CACTCCACAGTGACATCAAG-GAGATGGT--ATA--TTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-AGAAA-A---C-------------------CA-TACAAAT-TTATA--ACTGTTGA--TGAGCATTTTT-A-ATAGCA-ATGAATCANAATAATA-CA-TATCACCCCCACCC-ACCCCA--------TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACATGT--AC-CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TTGTCA--TTGTG-CATGTG------GGTAA-TCAG-TAA-TTGC--TAATGCTTGTGA-CATAAAAATA--TAGTGGAT-AA-TTCCTTA-AAACCAATG-CATGGTAAAATC-AA-AT----TCTT--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTGTATGTAACTGTTTACCTATCTATCTATATCGATCTAATCTAGTATTATATATCTGATGCTTAGTTAGTCTATCTATC-------AT-CCATCCATAATGTTATAACAGTATGCAGTG-ATCGTT-A---------ACTTCATCGTACATTTGCCCTGCACTTTA-CAC------------------CATTGT-TTACTTCG-CCAA--TTTATAT-------------CCAT-ATTCATACAATGCCATAACGT--AT-ATGTGCACG--GNAATTAGTA-AAACG-AA-----GAC--AATG--ATGAA--AATAATTTGTGTGACTTGATGCAAAGTCAAATATCAGTCAG-ACACCAAATTTAT-AACGACATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTACAA---AATAGCAGN-TATACAGTGAACAATAAAAGTTAGTTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTTAA-TTCCAT---CATCG-TCAGAGTCAAAGA-TTCTCAGT
Reference ( gi|4 ) : CACTCCACAGTGATATCAAG-AGGATGGT--ATA--TTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-AGAAA-A---C-------------------CA-TACAAAT-TCATA--ACTGTTGG--TGAGCATTTTT-A-ATAGCA-ATGAATCACAATAATA-CA-TATCACCCCCACTC-ACCCTA--------TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACATGT--AC-CGTTA-AGCT-----A-AAA--C--AA-AGTGT--A-TTGTCA--TTGTG-CATGCG------GGTGA-TCAA-TAT-TTCC--TAATGCTTGTGA-CATAAAAATA--CAGTGGAT-AA-TACCTTA-AAACCAATG-CATGATGAAATC-AA-AT----TCT---AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATACATGTATCCACACATTACTATAATACACTGTATGTAACCGTTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC-------AT-CCATCCATAATGTTACAATAGTATGCAGTG-ATCGTT-A---------ACTTCATCGTACATTTGCCCTGCACTTTA-CAT------------------CATTGT-TTACTTTG-CCAA--TTAATAT-------------CCAT-ATCCATGCAATGCCATGGCGT--AT-ATGTGCACG--ACAATTAATA-AAACG-AA-----GGC--AATG--ATGAA--AATAATTTGTGTGACTTGATGCAAACTCAAATATTAGTCAG-ACACCAAATTTAT-AACGACATTATCTCTTTACATG-ATA-CTCAA-ATGTCCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTTCAA---AATAGCAGC-GATACAGTAAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTCAA-T----T---CATCG-TCAGAGTCAAAGA-TTCTCAGT
gi|5 : CACTCCACAGTGACATCAAG-GAGATGGT--ATA--TTTTT-----------------C----TTGGTATGCT-AAAAGCCT-CATCGC-AGAAA-A---C-------------------CA-TACATCT-TTATA--ACTGTTGG--TGAACATTTTT-A-ATAGCA-ATGAATCACAATAATA-CA-CATCACCCCCACCC-ACCCCA--------TATT-GTAATAATTTGAATT-TGC-CAAC---AAC-AATGAA-C-----TGATGTAGTTACATGTACATGT--AC-CGTTA-AGCT-----A-AAT--C--AA-AGTGT--A-TTGTCA--TTGTG-TATGTG------GGTAA-TCAG-TAA-TTGC--CAATGCTTGTGA-CATAAAAATA--CAGTGGAT-AA-TTCCTTA-AAACCAATG-CATGGTAAAATC-AA-AT----TAT---TAA-CACTTGTCACATTGCCATCAA-TGTGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTGTATGTAACAGTTTA
gi|2 : CACTCAACAGTGACATCAAG-GAGATGGT--ATA--TTTTT-CCTTT-CAAA-GTAATC----TTGATATACT-AAAAGCCT-CATCGC-AGAAA-A---CTTATACAACCGCAGAAAACCA-TACAAAT-TTATA--ACTGTTGA--TGAGCATTTT--A-ATAGCA-ATGAATTAGAATAATA-CA-TATCACCC--ACCC-ACCCCA--------TATA-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACATGT--AC-TCTCA-AGTT-----A-AAAAGA--AA-AGCGC--A-TTGTCA--TTGTG-CATGTG------GGTAA-TCAT-TAA-TTGCTATAATGCTTGTGA-CATGAAAATA--TTGTGGAT-AA-TTCCTTA-AAACCA----C-TGGT-AAATCTAA-AT----TCTTTCAAA-CACTTGTCACACTGTCACCAA-TGCAGCGTATGAAATA-A-----CCACATATCACTATATTACA--G-AT-TAACTGTTTAacgatctatctatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcataatggtataacagt
gi|8 : CACTCAACAGTGACATCAAG-GAGATGGT--GTA--TTTTT-CCGTT-CAAA-GTAGTC----TTGACATGCT-AAAAGCCT-CATCGC-AGAAA-A---C-------------------CA-TGCAAAT-TTATT--ACTGTTGA--CGAGCATTTTA-A-ATAGCA-ATGAATCAGAATGATA-CA-TATTACCCCCACCA-ACCCCA--------AATA-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACCTGT--AC-CTTTA-AGCT-----A-A-------AA-AGCTC--A-TTCTCA--TTATG-CATGTG------GGTAA-TCAG-TAA-TTACTATAATGCTTGTGG-CATAATAATA--TAATCGAC-AA-TTCCTTA-TAGCCA----C-TGGTAAATTT-AA-AT----Ttctatatatctattcattcattcatccatccataatgctatagcattatgcagtgatcgttatccacatgcatttgccctgcactttacatccatattcatacaatgtcataacgtatatgtgcacggaaaatagtaagacaaatttaagacaatgatgaaaatattttgtgtgacttgatgcaaagtcaaatatcagtcagacaccaaacttatgacaacgttatctctttacgtaatacaccatgtagtgaaaggcttaattaatgtaattggaatataagtacaatttaatagcaaatatacaatgaacaataaaagttaatttctaaatgtaaatcagaagaactaatttccaagttaattccatcatcgtcagagttaaagatcctcagtgaagattatcattatcactatcagtaccaacgacagacactagaatgttctgaccgtctacatggtatgcacaaaactcgatgcagttaaggtggttcagcaaacagtgacacttaaaaaaattataagcttccacagt
gi|10 : CACTCCACAGTGACATCAAG-GAGATGTC--ATA--TTTTT-CCATT-CAAA-GTAATC----TTGATGTGCC-AGAAGCCT-CATCGC-AGAAA-A---C-------------------CA-TACAAAT-TTATA--ACTGTTGA--TGAGCAATTTT-G-ATAGCA-ATGAATCAGAATAATA-CA-TATGACCCCCACCC-ACCCAA--------TAGT-GTAATACTTTGAAAT-TAC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACACGT--AC-CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TCACCA--TTGTG-CATATA------GGTAA-TCA
gi|13 : attCACTCCACTATGACATCAAGGAGAATGGT--ATA--TATTTTCCTTTTCAAA-GTAATC----TTAATATGCTAAAAAGCCT-CTTCGC-AGCAATATTTT-------------------CAGTACAATTCTCATA--ACTTTTGA--TG--------------AGCA-ATGAATCAGAA-AATATCA-TG-CACCCCCACCC-ACCC-A--------TA----TAATACTT
gi|18 : cttCTCCGCAGTGACATCAAG-GAGATGGT--ATA-------------------GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-AGAAA-A---A-------------------CA-CACAAAT-TTATA--ACgattt
gi|7 : cttctTCCACAGTGAC-TCAAG-AGGATGGCTAATA--TTTTGTCTTTTTCAGACGTAATCAGACTTGATATGTT-AAA-GCCT--ATCGC-AGACA-A---C-------------------CA-ATCA--T-TAATATCACTTTTGAATTTAGCATTTTT-A-A-AATACATGGATCATCATA-TA-CA-TAT-ACCTCTGATCTACCCTAACCCCCAATATTCGTAATACTTTGAATTATGCACGACCTGAAC-AATGAG-CGATATTGAT-CAGT------TA-ATGT--ACGTGTTT-AGCTTCTAAA-GAA--C--AA-AGTGTGTA-TGGTCGAGTTGTGGCATCTG------GGTAA-TCGG-TAAATTGT--TAATTCGTGAGA-CATGCAAATC--TAGTGGAT-AA-TTCATT--ACACAAATGTCATGGTAAATTC-AA-ATTTTCTCT---AAAGCACTTggcttaacaag
gi|3 : agATCAAG-AAGATGGT--AT-----TTTTTCTTT-CAAA-GTAATC----TTGATATGTT-AAAAGCCT-CATCGC-AGAAA-A---C-------------------CA-TACAAAT-TAATA--ACTTTTGA--TTAGCATTTTT-A-ATAGCA-ATGAATCACAATAATA-CA-TATCACCCCCAACC-ACCCCA--------TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACATGT--AC-CGTTA-AGCT-----A-AAA--C--AA-AGTGT--A-ATGTAA--TTGTG-CATGTG------GGTAA-TCAG-TAA-TTGC--TAATGCTTGTGA-CATAAAAATA--CAGTGGAT-AA-TTCCTTA-AAACCAATG-CATGGTAAAATC-AA-AT----TCT---AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTATATGTAACTGTTTAttg
gi|1 : AAG-AGGA-GGT--ATACATTATTTCCTTT-CAA--GTAATC----TTGATATG-T-AAAAGCCTTCATGGCGAGAAA-A---C-------------------CA-TACAATG-TCATA--ACTGTTGG--TGAGCATTTTTCACATAGCA--TGAATCACAATAATA-CA-TATCACCCCTACTC-ACCCTA--------T--T-GTAATACTTTGAATT-TGC-CAAC---AATGAAGGAGGC-----TGATGCAGT------TACATGT--AC-CGTTAGAGCT-----A-AAA--C--AA-GTTG---A-TTGTCACATTGTG-CAT-CG------GGTGA-TCAA-TAT-TTC---TAATGCTTGTG--CATAA---TA--GCGTGGATTAA-T-CCTTATAGAGCA-TG-CATGATGAAATC-AAGAT----TCTT--AAA-CACTTGTCACACTGTTCCCAAATGCGGCG-ATGAAAT-CATGTATCCACACCTTACTATAATGCACTGTATGTAACCGTTTACCTATCTATCTATATCGATCTAATCTAGTATTATATATCTGATGCTTAGTTAGTCTATCTATCTATTTTCATACCATCCATGA-GTTACAATAGTA-GCAGTGTATCGTTGA---------ACTTC--CGTAACTTTGCC-TG-ACTTTAACATG-----------------CATTGTGTTACTTTGGCCAAGTTTAA-AT-------------CCATGATCCATGCAA-GCCATGG-GTGGAT-ATGTGCACG--ACAATTAATA-AA--G-AA-----GCCCGAATG---TGAA--AATAATTTGTGTGACTTGATGCAAACTCAA-TATTAGTCAGGACACCAAATTT-T-AACGACATTATCTCTTTACATG-ATA-CTCAA-ATGT---TGTAGTGGA-GGCTTA-ATC----TAAT-TGGACTAT--AAGATTAA---AATAGCAGCGGATACAGTAAACAAT-AAAGTTAATTTCTA--AAT-GT---AAATCT-CAGA---GGAACTAATTTCCAAGTCAATT----T---CATCG-TCAGAGTCAAAGA-TTCTCAGTtctatctatctatctatctatccatccatccataatgttataacagtatgcagtgatcgttattaccgttaacttcatcgtacatttgccctgcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccatattcatacaatgccataacgtatatgtgcacggaaattagtaaaacaaagacaatgatgaatatggatgatgcacagtcaaatatcagccagacaccaaatttataacggcattatctctttacgtgatactcaaatgaccatgtagtgaaaagcttaatcttattggactataagtacaaaatagcagttatacagtgaacaataaaagttagtttctaaatgtaaatcagaggaactaatttccaagttaattccatcatcgtcaaagtcaaagattctcagtaaagattatcattatcactagtctatcagattcaacaacaaccattattacattcaacaacagccactagaatgttctgacc
gi|9 : attcacccagatggcaag--TGAGCATATGT-A-ATAGCA-ATGAATCACAATAATA-CA-TATCACCCCCACCC-ACCCCA--------TATT-GTAATACTTTGAATT-TGC-CAAC---ATT-AATGAG-C-----TGATGCAGT------TACATGT--AC-CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TTGTCA--TTGTG-CATGTG------GGTAA-TCAG-TAA-TTGC--TAATGCTTGTGA-CATAAAAACA--TAGTGGAT-AA-TTCTTTA-AAACCACTG-CATGGTAAAATC-AA-AT----ACTTTAAAA-TACTTGTCCCACTGTCACCAA-TGTGGCGTATGAAATA-AT-----CACACATCACTA-AATatccagattattattatctactatcagattcaacaacagccagctgagatgttctgaccgtctacatatcacaaactcaatgcagttcaggtggttagcagacgtgacacttaaaaaaaattatctgctgcaa
gi|12 : -ATGAATCAAAACAAT--CACTCTCACGCTC-TTC-CCACTA---------A---GTAAT----TG--TT-TGC-CAAC---AAT-AGT-AG-C-----AGAT-C--T------GAAATGTTAAC---TTA-AGAT-----ATAAA--CCTAATAGTAT--AATTCTGA--TT----CATGCGATAATGGGTAAATCGAGTAT-T-AC--TAATGCTTGTGACCATGAATATATTC-TTGAAT-AATTCCCTTA-A
gi|14 : A-TCAG-TAA-TTGC--TAATGCTTGTGA-CATAAAAATA--TAGTGTAT-AA-TTCCTTA-ACACCACTG----GA--AAATCTGA-AT----TCT---TAA-CACT--------TGTCACCAA-TGCAGCGTATGAAATA-A-----CCACACATCACTATAATAGAGTGTATGTAACTGcc
gi|2 : TC-------AT-CCATCCATAATGCTATAGCATTATGCAGTG-ATCGTT-A-----------TCCA-CATGCATTTGCCCTGCACT--------------------------------TTAC----------------AT-------------CCAT-ATTCATACAATGTCATAACGT--AT-ATGTGCACG--GAAAATAGTA-AGACA-AATTTAAGAC--AATG--ATGAA--AATATTTTGTGTGACTTGATGCAAAGTCAAATATCAGTCAG-ACACCAAACTTAT-GACAACGTTATCTCTTTACGTA-ATA---CA------CCATGTAGTGAAAGGCTTA-ATTAATGTAAT-TGGAATAT--AAGTACAATTTAATAGCAAA-TATACAATGAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---AGAACTAATTTCCAAGTTAA-TTCCAT---CATCG-TCAGAGTTAAAGA-TCCTCAGTc
gi|3 : cactcaacagtgacatcaaggagatggtatatttttcctttcaaagtaatcttgatatactaaaagcctcatcgcagaaaacttatacaaccgcagaaaaccatacaaatttataactgttgatgagcattttaatagcaatgaattagaataatacatatcacccacccaccccatatagtaatactttgaatttgccaacaacaatgagctgatgcagttacatgtactctcaagttaaaaagaaaagcgcattgtcattgtgcatgtgggtaatcattaattgctataatgcttgtgacatgaaaatattgtggataattccttaaaaccactggtaaatctaaattctttcaaacacttgtcacactgtcaccaatgcagcgtatgaaataaccacatatcactatattacagattaactgtttatctatatatctattcattcatC-------AT-CCATCCATAATGTTATAACAGTATGCAGTG-ATCGTT-ATTACCGTTAACTTCATCGTACATTTGCCCTGCANNNNN-NNN------------------NNNNNN-NNNNNNNN-NNNN--NNNNNNNNNNNNNNNNNNNNCCAT-ATTCATACAATGCCATAACGT--AT-ATGTGCACG--GAAATTAGTA-AAACA-AA-----GAC--AATG--ATGAA---------TATG-GA--TGATGCACAGTCAAATATCAGCCAG-ACACCAAATTTAT-AACGGCATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGAAAAGCTTA-ATC----TTAT-TGGACTAT--AAGTACAA---AATAGCAGT-TATACAGTGAACAATAAAAGTTAGTTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTTAA-TTCCAT---CATCG-TCAAAGTCAAAGA-TTCTCAGTgaagattatcattatcactatcagtaccaacgacagacactagaatgttctgaccgtctacatggtatgcacaaaactcgatgcagttaaggtggttcagcaaacagtgacacttaaaaaaattataagcttccacagt
gi|11 : atcaagaagatggtattttttctttcaaagtaatcttgatatgttaaaagcctcatcgcagaaaaccatacaaattaataacttttgattagcatttttaatagcaatgaatcacaataatacatatcacccccaaccaccccatattgtaatactttgaatttgccaacaacaatgagctgatgcagttacatgtaccgttaagctaaaacaaagtgtaatgtaattgtgcatgtgggtaatcagtaattgctaatgcttgtgacataaaaatacagtggataattccttaaaaccaatgcatggtaaaatcaaattctaaacacttgtcacactgtcaccaatgcggcgtatgaaataaccacacatcactataatacagtatatgtaactgtttatctatctatctatctatctatcC-------AT-CCATCCATAATGTTATAATAGT--------------T-A---------ACCAAATCGTACATTTGCCCTGCACTTTA-CACTTTACGTTTACAGTAACACATTGT-TTGCTTCG-CCAA--TTTATAT-------------CCAT-ATTCATACAATGCCATTACGC--AT-ATGTGCACG--GAAAGTAGTA-AAACG-AA-----GAC--AATG--ATGAA--AATAATTTGTGTGACTTGATGCAAAGTCAAATaaagattatcattatcactagtctatcagattcaacaacaaccattattacattcaacaacagccactagaatgttctgacc
gi|21 : atctatctatttatctatctgcctgtctctctatctatctgtctatccatcA-CA-------------------CATTGT-TTACTTCG-CCAA--TTTATGC-------------CGGT-ATTCAcc
gi|15 : ------------------CATTGT-T-ACTTCG-CCAG--TTTATAT-------------CT----TTCATTCAA---CATA-CGT--AT-ACATGTACG---CA--TGATATAAATC-AG-----GAT--AATGCGACGAA--AATA
gi|6 : taataT--ATGATGTGCACGGAATAATTAGTA-TAATGCAA-----GACTAAAGG--ATGAATAAATAA--------ACCTTGTG-----TC---TGTT--TC------TTAAATCTATTAA--ACATTATCTTTCCA-ATGCATATCTCAATATGAACTTGTAGT-GAAAACTTACATCT---TAATATGGCTTATACAAGTACAA---G--AGCA---------------AATAAA--TTAGCTTTTGATAATAGTATAAAA--TCCAGATTTAGAACTTATTTCAATTTAAA-T----TCAGCATCGTTCAGACTCCAATATTTTTCAGTgacaatttcaggggatttaaatgtagaatcata
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): ATCACCATCAGATTCAACATCAGCCACTCTAATGTTCTGACCGTCTACATGGTATGCACAAAACTCAATGCAGGTAAGGTGGTTCAGGAGACAGTGACACTTAAGAAAATAG
Unaligned ( gi|17 ): TAATTTAGTCATTCCCATCATTGGCAGATTCTCAGTAAAGATTATTATTATCACTGTCAGAGTCAACAACAGTCACTAGAATGTTCGGACCGTCTACGTGTG
Unaligned ( gi|19 ): ATCAGATTCAACAACAGCCACTAGAATGGTAATGTGTTCAAAACTCAATGCAGTTACGGTGTTTCAGCAGACAGTGACGCT
Unaligned ( gi|20 ): ATCGATCTATTGATTCATCTATCTATCTATCTATCCATCCGCCCATCCATCCATCCCATCCATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 1 3333333333333333333 11111 111111 11111 11 11 1111 222222 22222222222 11111 1111111111111111111111111111111111111111111 1 2222222 3333333333 55555555555555555555 3333333333333 11 11111 11 11111111 2222 11 111 2222 11 111 11 111
lowQualScore : 4 55 3 0 8 44 8888 4 4 5555555555555555555 4 777 4 55 4 0 55 44 4 3 1 3 99999 55 55 55 3 66 4 4 777 4 4 00000 111111 55 4 4 00000 4 11 4 888 4 11 4 4 4 44 3 3 77 55 55 4 4 4 4 7777 7 4 4 555555 5 1 5 55555555555 8 00000 9999999999999999999999999999999999999999999 2 33 8 6 6666666 0 5 5 8 8 2222222222 66 6 55555555555555555555 5 2 5 5 1111111111111 5 55 55 5 888 1 5 5 44444 55 77 77 22222222 77 1 3 5 3 0 1 8 0 11 3 8 8 0 8 6 1 0 8 5555 8 11 1 444 0 0000 1 0 0 11 8 444 11 8 444 9999 8 8
lowQualScore : . .. . . . .. .... . . ................... . ... . .. . . .. .. . . . . ..... .. .. .. . .. . . ... . . ..... ...... .. . . ..... . .. . ... . .. . . . .. . . .. .. .. . . . . .... . . . ...... . . . ........... . ..... ........................................... . .. . . ....... . . . . . .......... .. . .................... . . . . ............. . .. .. . ... . . . ..... .. .. .. ........ .. . . . . . . . . .. . . . . . . . . . .... . .. . ... . .... . . . .. . ... .. . ... .... . .
lowQualScore : 0 55 0 8 0 77 5555 0 0 0000000000000000000 0 000 0 55 0 5 55 99 0 6 0 6 11111 00 00 00 6 00 0 0 000 0 0 00000 555555 55 0 0 00000 0 00 0 555 0 00 0 0 0 77 6 6 44 55 55 0 0 0 0 2222 3 4 4 888888 0 4 7 33333333333 5 66666 3333333333333333333333333333333333333333333 8 00 0 0 0000000 8 0 6 0 0 8888888888 44 7 66666666666666666666 7 9 7 7 4444444444444 0 77 11 7 999 6 7 7 33333 77 99 99 66666666 99 4 0 7 0 8 4 0 8 66 2 0 0 8 0 0 4 8 0 0000 0 00 4 000 8 4444 4 8 8 00 0 000 00 0 000 6666 0 0
consensus : CACTCCACAGTGACATCAAGGAGA-TGGT--ATATTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCATTTTT-A-ATAGCA-ATGAATCANAATAATA-CATATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACATGT--AC-CGTTA-AGCT-----A-AAAC--AA-AGTGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TA--ATGCTTGTGA-CATAAAAATA-TAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTCT---T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-----A-----CCACACATCACTATAATACAGTGTATGTAACCGTTTACCTATCTATCTATATC-ATCTAGTCTAGT-CTATATATCT-AT-CT---TCAGTCTATCTAT-C-AT-------CCATCCATAATGTTATAATAGTATGCAGTG-ATCGTT-A---------ACTTCATCGTACATTTGCCCTGCACTTT-ACAC------------------CATTGT-TTACTTC-GCCAA-TTTATAT-------------CCAT-ATTCATACAATGCCAT-GACGTAT-ATGTGCACGG--NAATTAGTA-AAACG-AA-----GAC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAAGTCAAATATCAGTCA-GACACCAAATTTATAACGACATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTACAA---AATAGCAG-NNATACAGTGAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTTAATTCCATCATCG-TCAGAGTCAAAGA-TTCTCAGT
Reference ( family-7351 ) : CACTCCACAGTGACATCAAGGAGA-TGGT--ATATTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCATTTTT-A-ATAGCA-ATGAATCANAATAATA-CATATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACATGT--AC-CGTTA-AGCT-----A-AAAC--AA-AGTGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TA--ATGCTTGTGA-CATAAAAATA-TAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTCT---T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-----A-----CCACACATCACTATAATACAGTGTATGTAACTGTTTACCTATCTATCTATATCGATCTAATCTAGTATTATATATCTGATGCTTAGTTAGTCTATCTAT-C-AT-------CCATCCATAATGTTATAACAGTATGCAGTG-ATCGTT-A---------ACTTCATCGTACATTTGCCCTGCACTTT-ACAC------------------CATTGT-TTACTTC-GCCAA-TTTATAT-------------CCAT-ATTCATACAATGCCAT-AACGTAT-ATGTGCACGG--NAATTAGTA-AAACG-AA-----GAC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAAGTCAAATATCAGTCA-GACACCAAATTTATAACGACATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTACAA---AATAGCAG-NTATACAGTGAACAATAAAAGTTAGTTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTTAATTCCATCATCG-TCAGAGTCAAAGA-TTCTCAGT
gi|1 : AGGAGG-TA-T--ACATTATTTCCTTT-CAA--GTAATC----TTGATATG-T-AAAAGCCTTCATGGCG------------------AGAAA-A---CCA-TACA--ATG-TCATAACTGTTGG--TGAGCATTTTTCACATAGCA--TGAATCACAATAATA-CATATCACCCCT-----ACTC--AC--CC-----TATT-GTAATACTTTGAATT-TGC-CAAC---AATGAAGGAGGC-----TGATGCAGT------TACATGT--AC-CGTTAGAGCT-----A-AAAC--AA-GTTG---A-TTGTCACATT-GTG-C-AT--CGGGTGA-TC-AATA--TTTC--TA--ATGCTTGTG--CATAA---TA-GCGTGGATTAAT-CCTTATAGAGCA-TG-CATGATGAAATC-AAGATTCT---T--AAA-CACTTGTCACACTGTTCCCAAATGCGGCG-ATGAAATC-----ATGTATCCACACCTTACTATAATGCACTGTATGTAACCGTTTACCTATCTATCTATATCGATCTAATCTAGTATTATATATCTGATGCTTAGTTAGTCTATCTAT-CTATTTTCATACCATCCATGA-GTTACAATAGTA-GCAGTGTATCGTTGA---------ACTTC--CGTAACTTTG-CCTG-ACTTTAACATG-----------------CATTGTGTTACTTTGGCCAAGTTTAAAT-------------CCATGATCCATGCAA-GCCATGGGTGGAT-ATGTGCACGA--CAATTAATA-AA--G-AA-----GCCCGAAT--G-TGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAACTC-AATATTAGTCAGGACACCAAATTT-TAACGACATTATCTCTTTACATG-ATA-CTCAA-ATG---TTGTAGTGG-AGGCTTA-ATC----TAAT-TGGACTAT--AAGATTAA---AATAGCAGCGGATACAGTAAACAAT-AAAGTTAATTTCTA--AAT-GT---AAATCT-CAGA---GGAACTAATTTCCAAGTCAATT---TCATCG-TCAGAGTCAAAGA-TTCTCAGT
gi|10 : attcacccagatggcaagaagCACTCCACAGTGACATCAAGGAGA-TGTC--ATATTTTT-CCATT-CAAA-GTAATC----TTGATGTGCC-AGAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCAATTTT-G-ATAGCA-ATGAATCAGAATAATA-CATATGACCCCC-----ACCC--AC--CCA--A-TAGT-GTAATACTTTGAAAT-TAC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACACGT--AC-CGTTA-AGCT-----A-AAAC--AA-AGTGC--A-TCACCA--TT-GTG-C-ATA-TAGGTAA-TC-Aatccagattattattatctactatcagattcaacaacagccagctgagatgttctgaccgtctacatatcacaaactcaatgcagttcaggtggttagcagacgtgacacttaaaaaaaattatctgctgcaa
gi|11 : attATCTATCTATT--TATCTATCT-GCCT-GT-CTCTCTATCT-AT-CT------GTCTATCCATCC-AT-------CCATCCATAATGTTATAATA--------------GTT-A---------ACCAAATCGTACATTTGCCCTGCACTTT-ACACTTTACGTTTACAGTAACACATTGT-TTGCTTC-GCCAA-TTTATAT-------------CCAT-ATTCATACAATGCCAT-TACGCAT-ATGTGCACGG--AAAGTAGTA-AAACG-AA-----GAC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAAGTCAAAT
gi|12 : -ATGAATCAAAACAAT-------CACTCTC-----ACGC--TCTTCCC--ACTAA--GTAAT----TG--TT-TGC-CAAC---AAT-AGT-AG-C-----AGAT-C--T------GAAATGTTAAC---TTA-AGAT-----ATAAACCTAATAGTAT--AATTCTGA--TTCATG-CGATAATGGGTAAATCGAGTA--TTAC--TA--ATGCTTGTGACCATGAATATATTCTTGAATAATTCCCTTA-Acc
gi|13 : CACTCCACTATGACATCAAGGAGAATGGT--ATATATTTTCCTTTTCAAA-GTAATC----TTAATATGCTAAAAAGCCT-CTTCGC-------------------AGCAATATTTTCAGTACA--ATTCTCATAACTTTTGA--TG--------------AGCA-ATGAATCAGAA-AATATCATG-CACCCCC-----ACCC--A---CCC--A-TA----TAATACTTcc
gi|14 : cttA-TC-AGTAA-TTGC--TA--ATGCTTGTGA-CATAAAAATA-TAGTGTATAATT-CCTTA-ACACCA----C-TGG-AAAATCTGA-ATTCT---T--AA--CACTTGTC--------ACCAA-TGCAGCGTATGAAATA-----A-----CCACACATCACTATAATAGAGTGTATGTAACTGgattt
gi|15 : ------------------CATTGT-T-ACTTC-GCCAG-TTTATAT-------------CT----TTCATTCAA---CAT--ACGTAT-ACATGTAC-G--CA--TGATATAAATC-AG-----GAT--AATGCGACGA--AAATAGACAA--TTTCAG-GGGATTTAAATGTAGAATCAc
gi|18 : taataCTCCGCAGTGACATCAAGGAGA-TGGT--ATA-----------------GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---ACA-CACA--AAT-TTATAACta
gi|2 : cttctCACTCAACAGTGACATCAAGGAGA-TGGT--ATATTTTT-CCTTT-CAAA-GTAATC----TTGATATACT-AAAAGCCT-CATCGCAGAAAACTTATACAACCGCAGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCATTTT--A-ATAGCA-ATGAATTAGAATAATA-CATATCACCC-------ACCC--AC--CCC--A-TATA-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACATGT--AC-TCTCA-AGTT-----A-AAAAGAAA-AGCGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-ATTAA-TTGC--TATAATGCTTGTGA-CATGAAAATA-TTGTGGATAATT-CCTTA-AAACCA----C-TGGTAAATCT-AA-ATTCT---TTCAAA-CACTTGTCACACTGTCACCAA-TGCAGCGTATGAAATA-----A-----CCACATATCACTATATTACAG---AT-TAACTGTT--------------TATC---------------TATATATCT-AT------TCATTC-AT---T-C-AT-------CCATCCATAATGCTATAGCATTATGCAGTG-ATCGTT-A-----------TCCA-CATGCATTTGCCCTGCACTTT-ACA----------------------------------------------T-------------CCAT-ATTCATACAATGTCAT-AACGTAT-ATGTGCACGG--AAAATAGTA-AGACA-AATTTAAGAC--AAT--GATGA--AAAT----AT--TTT--GTGTGACTT-GATGCAAAGTCAAATATCAGTCA-GACACCAAACTTATGACAACGTTATCTCTTTACGTA-ATA-C--------ACCATGTAGTGAAAGGCTTA-ATTAATGTAAT-TGGAATAT--AAGTACAATTTAATAGCAA-ATATACAATGAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---AGAACTAATTTCCAAGTTAATTCCATCATCG-TCAGAGTTAAAGA-TCCTCAGTggcttaacaag
gi|21 : -ACAC-------------------ATTGT-TTACTTC-GCCAA-TTTATGC-------------CGGT-ATTCAgaagattatcattatcactatcagtaccaacgacagacactagaatgttctgaccgtctacatggtatgcacaaaactcgatgcagttaaggtggttcagcaaacagtgacacttaaaaaaattataagcttccacagt
gi|3 : ATCAAGAAGA-TGGT--AT---TTTTTCTTT-CAAA-GTAATC----TTGATATGTT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TAATAACTTTTGA--TTAGCATTTTT-A-ATAGCA-ATGAATCACAATAATA-CATATCACCCCC-----AACC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACATGT--AC-CGTTA-AGCT-----A-AAAC--AA-AGTGT--A-ATGTAA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TA--ATGCTTGTGA-CATAAAAATA-CAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTCT------AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-----A-----CCACACATCACTATAATACAGTATATGTAAC--------TGTTTATCT------ATCTA-TCTA--------------------------TCTATCTAT-CCAT-------CCATCCATAATGTTATAACAGTATGCAGTG-ATCGTT-ATTACCGTTAACTTCATCGTACATTTGCCCTGCANNNN-NNNN------------------NNNNNN-NNNNNNN-NNNNN-NNNNNNNNNNNNNNNNNNNNCCAT-ATTCATACAATGCCAT-AACGTAT-ATGTGCACGG--AAATTAGTA-AAACA-AA-----GAC--AAT--GATGA--A-------------T--ATG-GA--T-GATGCACAGTCAAATATCAGCCA-GACACCAAATTTATAACGGCATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGAAAAGCTTA-ATC----TTAT-TGGACTAT--AAGTACAA---AATAGCAG-TTATACAGTGAACAATAAAAGTTAGTTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTTAATTCCATCATCG-TCAAAGTCAAAGA-TTCTCAGT
gi|4 : CACTCCACAGTGATATCAAGAGGA-TGGT--ATATTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TCATAACTGTTGG--TGAGCATTTTT-A-ATAGCA-ATGAATCACAATAATA-CATATCACCCCC-----ACTC--AC--CCT--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACATGT--AC-CGTTA-AGCT-----A-AAAC--AA-AGTGT--A-TTGTCA--TT-GTG-C-ATG-CGGGTGA-TC-AATAT-TTCC--TA--ATGCTTGTGA-CATAAAAATA-CAGTGGATAATA-CCTTA-AAACCAATG-CATGATGAAATC-AA-ATTCT------AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATACATGTAT----CCACACATTACTATAATACACTGTATGTAACCGTTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT-C-AT-------CCATCCATAATGTTACAATAGTATGCAGTG-ATCGTT-A---------ACTTCATCGTACATTTGCCCTGCACTTT-ACAT------------------CATTGT-TTACTTT-GCCAA-TTAATAT-------------CCAT-ATCCATGCAATGCCAT-GGCGTAT-ATGTGCACGA--CAATTAATA-AAACG-AA-----GGC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAACTCAAATATTAGTCA-GACACCAAATTTATAACGACATTATCTCTTTACATG-ATA-CTCAA-ATGTCCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTTCAA---AATAGCAG-CGATACAGTAAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTCAAT----TCATCG-TCAGAGTCAAAGA-TTCTCAGTaaagattatcattatcactagtctatcagattcaacaacaaccattattacattcaacaacagccactagaatgttctgacc
gi|5 : CACTCCACAGTGACATCAAGGAGA-TGGT--ATATTTTT-----------------C----TTGGTATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--TCT-TTATAACTGTTGG--TGAACATTTTT-A-ATAGCA-ATGAATCACAATAATA-CACATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATAATTTGAATT-TGC-CAAC---AAC-AATGAA-C-----TGATGTAGTTACATGTACATGT--AC-CGTTA-AGCT-----A-AATC--AA-AGTGT--A-TTGTCA--TT-GTG-T-ATG-TGGGTAA-TC-AGTAA-TTGC--CA--ATGCTTGTGA-CATAAAAATA-CAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTAT---T---AA-CACTTGTCACATTGCCATCAA-TGTGGCGTATGAAATA-----A-----CCACACATCACTATAATACAGTGTATGTAACAGTTTAACGATCTATCTAT
gi|6 : CAT-ATTCAAATAGT----------TATGATGTGCACGGAATAATTAGTA-TAATGCAA-----GACTAAAG--GATGAATAAAT----AAACCTT--GTGT---CT-GTTTC----TTAAAT-------------CTA---TTA-AAC---ATTATCTTTCCA-ATGCATATCTCAATATGAACTTGTAGT-GAAAACTTACATCT---TAATATGGCTTATACAAGTACAA---G--AGCA---------------AATAAA--TTAGCTTTTGATAATAGTATAAAA--TCCAGATTTAGAACTTATTT-CAATTTAAATTCAGCATCGTTCAGACTCCAATATTTTTCAGTttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcataatggtataacagt
gi|7 : TCCACAGTGAC-TCAAGAGGA-TGGCTAATATTTTGTCTTTTTCAGACGTAATCAGACTTGATATGTT-AAA-GCCT--ATCGC-------------------AGACA-A---CCA-ATCATTAAT---ATCACTTTTGAATTTAGCATTTTT-A-A-AATACATGGATCATCATA-TA-CATAT-ACCTCTGATCTACCCTAAC--CCCCAA-TATTCGTAATACTTTGAATTATGCACGACCTGAAC-AATGAG-CGATATTGAT-CAGT------TA-ATGT--ACGTGTTT-AGCTTCTAAA-GAAC--AA-AGTGTGTA-TGGTCGAGTT-GTGGC-ATC-TGGGTAA-TC-GGTAAATTGT--TA--ATTCGTGAGA-CATGCAAATC-TAGTGGATAATT-CATT--ACACAAATGTCATGGTAAATTC-AA-ATTTTCTCT--AAAGCACTTtaacagtttatcattgtcgattccacaacaccacttagattactgttctgacctatactaagtgtatgctcaaaactagatgcagtaaagtggttcagcagagacacttaaaaaaattatcggctgtcac
gi|8 : agCACTCAACAGTGACATCAAGGAGA-TGGT--GTATTTTT-CCGTT-CAAA-GTAGTC----TTGACATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TGCA--AAT-TTATTACTGTTGA--CGAGCATTTTA-A-ATAGCA-ATGAATCAGAATGATA-CATATTACCCCC-----ACCA--AC--CCC--A-AATA-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACCTGT--AC-CTTTA-AGCT-----A-A-----AA-AGCTC--A-TTCTCA--TT-ATG-C-ATG-TGGGTAA-TC-AGTAA-TTACTATA--ATGCTTGTGG-CATAATAATA-TAATCGACAATT-CCTTA-TAGCCA----C-TGGTAAATTT-AA-ATTttg
gi|9 : --TGAGCATATGT-A-ATAGCA-ATGAATCACAATAATA-CATATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---ATT-AATGAG-C-----TGATGCAGT------TACATGT--AC-CGTTA-AGCT-----A-AAAC--AA-AGTGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TA--ATGCTTGTGA-CATAAAAACA-TAGTGGATAATT-CTTTA-AAACCACTG-CATGGTAAAATC-AA-ATACT---TTAAAA-TACTTGTCCCACTGTCACCAA-TGTGGCGTATGAAATA-----A-----TCACACATCACTA-AAT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATCACCATCAGATTCAACATCAGCCACTCTAATGTTCTGACCGTCTACATGGTATGCACAAAACTCAATGCAGGTAAGGTGGTTCAGGAGACAGTGACACTTAAGAAAATAG
Unaligned ( gi|17 ): TAATTTAGTCATTCCCATCATTGGCAGATTCTCAGTAAAGATTATTATTATCACTGTCAGAGTCAACAACAGTCACTAGAATGTTCGGACCGTCTACGTGTG
Unaligned ( gi|19 ): ATCAGATTCAACAACAGCCACTAGAATGGTAATGTGTTCAAAACTCAATGCAGTTACGGTGTTTCAGCAGACAGTGACGCT
Unaligned ( gi|20 ): ATCGATCTATTGATTCATCTATCTATCTATCTATCCATCCGCCCATCCATCCATCCCATCCATA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 3333333333333333333 11111 111111 11111 11 11 1111 1111111 22222 22222222 666666666666666666666666666666666666666666666666666666666666666 333333333 55555555555555555555555555555555555555555 11 11 22222 11 11111111 2222 11 111 1111 11 111 11 111
lowQualScore : 4 55 3 0 8 44 8888 4 4 5555555555555555555 4 777 4 55 4 0 55 44 4 3 1 3 99999 55 55 55 3 66 4 4 777 4 4 00000 111111 55 4 4 00000 4 66666 4 888 4 11 4 4 4 44 3 3 77 11 4 4 4 4 7777 7 4 4 6666666 5 1 5 5 88888 2 77777777 0 333333333333333333333333333333333333333333333333333333333333333 0 66 8 222222222 8 0 66 88888888888888888888888888888888888888888 5 2 5 5 5 2 00 11 888 1 5 00000 55 77 77 22222222 77 1 3 5 3 0 1 8 0 11 3 8 8 0 8 6 1 0 8 5555 8 11 1 444 0 8888 1 0 0 11 8 444 11 8 444 9999 8 8
lowQualScore : . .. . . . .. .... . . ................... . ... . .. . . .. .. . . . . ..... .. .. .. . .. . . ... . . ..... ...... .. . . ..... . ..... . ... . .. . . . .. . . .. .. . . . . .... . . . ....... . . . . ..... . ........ . ............................................................... . .. . ......... . . .. ......................................... . . . . . . .. .. ... . . ..... .. .. .. ........ .. . . . . . . . . .. . . . . . . . . . .... . .. . ... . .... . . . .. . ... .. . ... .... . .
lowQualScore : 0 55 0 8 0 77 5555 0 0 0000000000000000000 0 000 0 55 0 5 55 99 0 6 0 6 11111 00 00 00 6 00 0 0 000 0 0 00000 555555 55 0 0 00000 0 00000 0 555 0 00 0 0 0 77 6 6 44 00 0 0 0 0 2222 3 4 4 8888888 0 4 7 7 66666 2 44444444 8 888888888888888888888888888888888888888888888888888888888888888 8 44 0 000000000 0 8 44 77777777777777777777777777777777777777777 7 9 7 7 0 4 77 00 999 6 7 00000 77 99 99 66666666 99 4 0 7 0 8 4 0 8 66 2 0 0 8 0 0 4 8 0 0000 0 00 4 000 8 8888 4 8 8 00 0 000 00 0 000 6666 0 0
consensus : CACTCCACAGTGACATCAAGGAGA-TGGT--ATATTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCATTTTT-A-ATAGCA-ATGAATCANAATAATA-CATATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACATGT--AC-CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-TAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTCT---T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTGTATGTAACCGTTTAC-------CTATCTATCTAT-TC-ATCTA---GCCT-GT-CT-T-TATCT-AT-CT---TCAGTCTATCCATC-AT-------CCATCCATAATGTTATAATAGTATGCAGTG-AT---------CGTT-AACTTCATCGTACATTTGCCCTGCA-------------CTTT-ACAC------------------CATTGT-TTACTTC-GCCAA-TTTATATCCAT-ATTCATACAAT-GCCAT-GACGTATATGTGCACGG--NAATTAGTA-AAACG-----AAGAC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAAGTCAAATATCAGTCA-GACACCAAATTTATAACGACATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTACAA---AATAGCAG-NNATACAGTGAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTTAATTCCATCATCG-TCAGAGTCAAAGA-TTCTCAGT
Reference ( family-7351 ) : CACTCCACAGTGACATCAAGGAGA-TGGT--ATATTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCATTTTT-A-ATAGCA-ATGAATCANAATAATA-CATATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACATGT--AC-CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-TAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTCT---T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTGTATGTAACCGTTTAC-------CTATCTATCTATATC-ATCTA---GTCTAGT-CTATATATCT-AT-CT---TCAGTCTATCTATC-AT-------CCATCCATAATGTTATAATAGTATGCAGTG-AT---------CGTT-AACTTCATCGTACATTTGCCCTGCA-------------CTTT-ACAC------------------CATTGT-TTACTTC-GCCAA-TTTATATCCAT-ATTCATACAAT-GCCAT-GACGTATATGTGCACGG--NAATTAGTA-AAACG-----AAGAC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAAGTCAAATATCAGTCA-GACACCAAATTTATAACGACATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTACAA---AATAGCAG-NNATACAGTGAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTTAATTCCATCATCG-TCAGAGTCAAAGA-TTCTCAGT
gi|1 : AGGAGG-TA-T--ACATTATTTCCTTT-CAA--GTAATC----TTGATATG-T-AAAAGCCTTCATGGCG------------------AGAAA-A---CCA-TACA--ATG-TCATAACTGTTGG--TGAGCATTTTTCACATAGCA--TGAATCACAATAATA-CATATCACCCCT-----ACTC--AC--CC-----TATT-GTAATACTTTGAATT-TGC-CAAC---AATGAAGGAGGC-----TGATGCAGT------TACATGT--AC-CGTTAGAGCT-----A-AAA--C--AA-GTTG---A-TTGTCACATT-GTG-C-AT--CGGGTGA-TC-AATA--TTTC--TAATGCTTGTG--CATAA---TA-GCGTGGATTAAT-CCTTATAGAGCA-TG-CATGATGAAATC-AAGATTCT---T--AAA-CACTTGTCACACTGTTCCCAAATGCGGCG-ATGAAATC-ATGTATCCACACCTTACTATAATGCACTGTATGTAACCGTTTAC-------CTATCTATCTATATCGATCTA---ATCTAGTATTATATATCTGATGCTTAGTTAGTCTATCTATCTATTTTCATACCATCCATGA-GTTACAATAGTA-GCAGTGTAT---------CGTTGAACTTC--CGTAACTTTG-CCTG-A-------------CTTTAACATG-----------------CATTGTGTTACTTTGGCCAAGTTTAAATCCATGATCCATGCAA--GCCATGGGTGGATATGTGCACGA--CAATTAATA-AA--G-----AAGCCCGAAT--G-TGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAACTC-AATATTAGTCAGGACACCAAATTT-TAACGACATTATCTCTTTACATG-ATA-CTCAA-ATG---TTGTAGTGG-AGGCTTA-ATC----TAAT-TGGACTAT--AAGATTAA---AATAGCAGCGGATACAGTAAACAAT-AAAGTTAATTTCTA--AAT-GT---AAATCT-CAGA---GGAACTAATTTCCAAGTCAATT---TCATCG-TCAGAGTCAAAGA-TTCTCAGT
gi|10 : attcacccagatggcaagaagCACTCCACAGTGACATCAAGGAGA-TGTC--ATATTTTT-CCATT-CAAA-GTAATC----TTGATGTGCC-AGAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCAATTTT-G-ATAGCA-ATGAATCAGAATAATA-CATATGACCCCC-----ACCC--AC--CCA--A-TAGT-GTAATACTTTGAAAT-TAC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACACGT--AC-CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TCACCA--TT-GTG-C-ATA-TAGGTAA-TC-Aatccagattattattatctactatcagattcaacaacagccagctgagatgttctgaccgtctacatatcacaaactcaatgcagttcaggtggttagcagacgtgacacttaaaaaaaattatctgctgcaa
gi|11 : attATCTATCTAT-TT-ATCTATCTGCCT-GT-CTCTCTATCT-AT-CT------GTCTATCCATCCAT-------CCATCCATAATGTTATAATAGT-----------------------T-AACCAAATCGTACATTTGCCCTGCA-------------CTTT-ACACTTTACGTTTACAGTAACACATTGT-TTGCTTC-GCCAA-TTTATATCCAT-ATTCATACAAT-GCCAT-TACGCATATGTGCACGG--AAAGTAGTA-AAACG-----AAGAC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAAGTCAAAT
gi|12 : -ATGAATCAAAACAAT-------CACTCTC-----ACGC--TCTTCCC--ACTAA--GTAAT----TG--TT-TGC-CAAC---AAT-AGT-AG-C-----AGAT-C--T------GAAATGTTAAC---TTA-AGAT-----ATAAA--CCTAATAGTAT--AATTCTGA--TTCATG-CGATAATGGGTAAATCGAGTA--TTAC--TAATGCTTGTGACCATGAATATATTCTTGAATAATTCCCTTA-Acc
gi|13 : CACTCCACTATGACATCAAGGAGAATGGT--ATATATTTTCCTTTTCAAA-GTAATC----TTAATATGCTAAAAAGCCT-CTTCGC-------------------AGCAATATTTTCAGTACA--ATTCTCATAACTTTTGA--TG--------------AGCA-ATGAATCAGAA-AATATCATG-CACCCCC-----ACCC--A---CCC--A-TA----TAATACTTcc
gi|14 : cttA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-TAGTGTATAATT-CCTTA-ACACCA----C-TGG-AAAATCTGA-ATTCT---T--AA--CACTTGTC--------ACCAA-TGCAGCGTATGAAATA-A-----CCACACATCACTATAATAGAGTGTATGTAACTGgattt
gi|15 : ------------------CATTGT-T-ACTTC-GCCAG-TTTATATCT----TTCATTCAA----CAT--ACGTATACATGTAC-G--CA--TGATATAAATC-----AGGAT--AATGCGACGA--AAATAGACAA--TTTCAG-GGGATTTAAATGTAGAATCAc
gi|18 : taataCTCCGCAGTGACATCAAGGAGA-TGGT--ATA-----------------GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---ACA-CACA--AAT-TTATAACta
gi|2 : cttctCACTCAACAGTGACATCAAGGAGA-TGGT--ATATTTTT-CCTTT-CAAA-GTAATC----TTGATATACT-AAAAGCCT-CATCGCAGAAAACTTATACAACCGCAGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCATTTT--A-ATAGCA-ATGAATTAGAATAATA-CATATCACCC-------ACCC--AC--CCC--A-TATA-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACATGT--AC-TCTCA-AGTT-----A-AAAAGA--AA-AGCGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-ATTAA-TTGCTATAATGCTTGTGA-CATGAAAATA-TTGTGGATAATT-CCTTA-AAACCA----C-TGGTAAATCT-AA-ATTCT---TTCAAA-CACTTGTCACACTGTCACCAA-TGCAGCGTATGAAATA-A-----CCACATATCACTATATTACAG---AT-TAACTGTTTAT-------CTATATATCTAT-TC-A------------------------------T---TCATTC-ATCCAT---------------CCATAATGCTATAGCATTATGCAGTG-AT---------CGTT-A--TCCA-CATGCATTTGCCCTGCA-------------CTTT-AC----------------------------------------------ATCCAT-ATTCATACAAT-GTCAT-AACGTATATGTGCACGG--AAAATAGTA-AGACAAATTTAAGAC--AAT--GATGA--AAAT----AT--TTT--GTGTGACTT-GATGCAAAGTCAAATATCAGTCA-GACACCAAACTTATGACAACGTTATCTCTTTACGTA-ATA-C--------ACCATGTAGTGAAAGGCTTA-ATTAATGTAAT-TGGAATAT--AAGTACAATTTAATAGCAA-ATATACAATGAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---AGAACTAATTTCCAAGTTAATTCCATCATCG-TCAGAGTTAAAGA-TCCTCAGTggcttaacaag
gi|21 : -ACAC-------------------ATTGT-TTACTTC-GCCAA-TTTATGCCGGT-ATTCAgaagattatcattatcactatcagtaccaacgacagacactagaatgttctgaccgtctacatggtatgcacaaaactcgatgcagttaaggtggttcagcaaacagtgacacttaaaaaaattataagcttccacagt
gi|3 : ATCAAGAAGA-TGGT--AT---TTTTTCTTT-CAAA-GTAATC----TTGATATGTT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TAATAACTTTTGA--TTAGCATTTTT-A-ATAGCA-ATGAATCACAATAATA-CATATCACCCCC-----AACC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACATGT--AC-CGTTA-AGCT-----A-AAA--C--AA-AGTGT--A-ATGTAA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-CAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTC----T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTATATGTAACTGTTTAT-------CTATCTATC----------------------------TATCT-AT-C----------TATCCAT-----------CCATCCATAATGTTATAACAGTATGCAGTG-ATCGTTATTACCGTT-AACTTCATCGTACATTTGCCCTGCANNNNNNNNNNNNNNNNN-NNNN------------------NNNNNN-NNNNNNN-NNNNN-NNNNNNNCCAT-ATTCATACAAT-GCCAT-AACGTATATGTGCACGG--AAATTAGTA-AAACA-----AAGAC--AAT--GATGA--A-------------T--ATG-GA--T-GATGCACAGTCAAATATCAGCCA-GACACCAAATTTATAACGGCATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGAAAAGCTTA-ATC----TTAT-TGGACTAT--AAGTACAA---AATAGCAG-TTATACAGTGAACAATAAAAGTTAGTTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTTAATTCCATCATCG-TCAAAGTCAAAGA-TTCTCAGT
gi|4 : CACTCCACAGTGATATCAAGAGGA-TGGT--ATATTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TCATAACTGTTGG--TGAGCATTTTT-A-ATAGCA-ATGAATCACAATAATA-CATATCACCCCC-----ACTC--AC--CCT--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACATGT--AC-CGTTA-AGCT-----A-AAA--C--AA-AGTGT--A-TTGTCA--TT-GTG-C-ATG-CGGGTGA-TC-AATAT-TTCC--TAATGCTTGTGA-CATAAAAATA-CAGTGGATAATA-CCTTA-AAACCAATG-CATGATGAAATC-AA-ATTC----T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATACATGTATCCACACATTACTATAATACACTGTATGTAACCGTTTACNNNNNNNNNNNNNNNNNNNNNN-NNNNN---NNNNNNN-NNNNNNNNNN-NN-NN---NNNNNNNNNNNNTC-AT-------CCATCCATAATGTTACAATAGTATGCAGTG-AT---------CGTT-AACTTCATCGTACATTTGCCCTGCA-------------CTTT-ACAT------------------CATTGT-TTACTTT-GCCAA-TTAATATCCAT-ATCCATGCAAT-GCCAT-GGCGTATATGTGCACGA--CAATTAATA-AAACG-----AAGGC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAACTCAAATATTAGTCA-GACACCAAATTTATAACGACATTATCTCTTTACATG-ATA-CTCAA-ATGTCCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTTCAA---AATAGCAG-CGATACAGTAAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTCAAT----TCATCG-TCAGAGTCAAAGA-TTCTCAGTaaagattatcattatcactagtctatcagattcaacaacaaccattattacattcaacaacagccactagaatgttctgacc
gi|5 : CACTCCACAGTGACATCAAGGAGA-TGGT--ATATTTTT-----------------C----TTGGTATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--TCT-TTATAACTGTTGG--TGAACATTTTT-A-ATAGCA-ATGAATCACAATAATA-CACATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATAATTTGAATT-TGC-CAAC---AAC-AATGAA-C-----TGATGTAGTTACATGTACATGT--AC-CGTTA-AGCT-----A-AAT--C--AA-AGTGT--A-TTGTCA--TT-GTG-T-ATG-TGGGTAA-TC-AGTAA-TTGC--CAATGCTTGTGA-CATAAAAATA-CAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTAT---T---AA-CACTTGTCACATTGCCATCAA-TGTGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTGTATGTAACAGTTTAA-------CGATCTATCTAT
gi|6 : CAT-ATTCA---AATAGTTAT-GA------TGTGCACGGAATAATTAGTA-TAATGC----AAGACTAAAG--GATGAATAAAT----AAACCTT--GTGT---CT-GTTTC----TTAAAT-------------CTA---TTA-AAC---ATTATCTTTCCA-ATGCATATCTCAATATGAACTTGTAGT-GAAAACTTACATCT---TAATATGGCTTATACAAGTACAA---G--AGCA---------------AATAAA--TTAGCTTTTGATAATAGTATAAAA--TCCAGATTTAGAACTTATTT-CAATTTAAATTCAGCATCGTTCAGACTCCAATATTTTTCAGTttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcataatggtataacagt
gi|7 : TCCACAGTGAC-TCAAGAGGA-TGGCTAATATTTTGTCTTTTTCAGACGTAATCAGACTTGATATGTT-AAA-GCCT--ATCGC-------------------AGACA-A---CCA-ATCATTAAT---ATCACTTTTGAATTTAGCATTTTT-A-A-AATACATGGATCATCATA-TA-CATAT-ACCTCTGATCTACCCTAAC--CCCCAA-TATTCGTAATACTTTGAATTATGCACGACCTGAAC-AATGAG-CGATATTGAT-CAGT------TA-ATGT--ACGTGTTT-AGCTTCTAAA-GAA--C--AA-AGTGTGTA-TGGTCGAGTT-GTGGC-ATC-TGGGTAA-TC-GGTAAATTGT--TAATTCGTGAGA-CATGCAAATC-TAGTGGATAATT-CATT--ACACAAATGTCATGGTAAATTC-AA-ATTTTCTCT--AAAGCACTTtaacagtttatcattgtcgattccacaacaccacttagattactgttctgacctatactaagtgtatgctcaaaactagatgcagtaaagtggttcagcagagacacttaaaaaaattatcggctgtcac
gi|8 : agCACTCAACAGTGACATCAAGGAGA-TGGT--GTATTTTT-CCGTT-CAAA-GTAGTC----TTGACATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TGCA--AAT-TTATTACTGTTGA--CGAGCATTTTA-A-ATAGCA-ATGAATCAGAATGATA-CATATTACCCCC-----ACCA--AC--CCC--A-AATA-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACCTGT--AC-CTTTA-AGCT-----A-A-------AA-AGCTC--A-TTCTCA--TT-ATG-C-ATG-TGGGTAA-TC-AGTAA-TTACTATAATGCTTGTGG-CATAATAATA-TAATCGACAATT-CCTTA-TAGCCA----C-TGGTAAATTT-AA-ATTttg
gi|9 : --TGAGCATATGT-A-ATAGCA-ATGAATCACAATAATA-CATATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---ATT-AATGAG-C-----TGATGCAGT------TACATGT--AC-CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAACA-TAGTGGATAATT-CTTTA-AAACCACTG-CATGGTAAAATC-AA-ATACT---TTAAAA-TACTTGTCCCACTGTCACCAA-TGTGGCGTATGAAATA-A-----TCACACATCACTA-AAT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATCACCATCAGATTCAACATCAGCCACTCTAATGTTCTGACCGTCTACATGGTATGCACAAAACTCAATGCAGGTAAGGTGGTTCAGGAGACAGTGACACTTAAGAAAATAG
Unaligned ( gi|17 ): TAATTTAGTCATTCCCATCATTGGCAGATTCTCAGTAAAGATTATTATTATCACTGTCAGAGTCAACAACAGTCACTAGAATGTTCGGACCGTCTACGTGTG
Unaligned ( gi|19 ): ATCAGATTCAACAACAGCCACTAGAATGGTAATGTGTTCAAAACTCAATGCAGTTACGGTGTTTCAGCAGACAGTGACGCT
Unaligned ( gi|20 ): ATCGATCTATTGATTCATCTATCTATCTATCTATCCATCCGCCCATCCATCCATCCCATCCATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111
lowQualScore : 1 3333333333333333333 11111 111111 11111 11 11 1111 1111111 22222 333333333333 3333333333333333333333333333333333333333333333333333333 333333333 55555555555555555555555555555555555555555 11 11 22222 11 11111111 2222 11 111 1111 11 111 11 111
lowQualScore : 4 55 3 0 8 44 8888 4 4 5555555555555555555 4 777 4 55 4 0 55 44 4 3 1 3 99999 55 55 55 3 66 4 4 777 4 4 00000 111111 55 4 4 00000 4 66666 4 888 4 11 4 4 4 44 3 3 77 11 4 4 4 4 7777 7 4 4 6666666 5 1 5 5 88888 2 333333333333 9999 0 9999999999999999999999999999999999999999999999999999999 0 5 5 8 222222222 8 0 66 88888888888888888888888888888888888888888 5 2 5 5 5 2 00 11 888 1 5 00000 55 77 77 22222222 77 1 3 5 3 0 1 8 0 11 3 8 8 0 8 6 1 0 8 5555 8 11 1 444 0 8888 1 0 0 11 8 444 11 8 444 9999 8 8
lowQualScore : . .. . . . .. .... . . ................... . ... . .. . . .. .. . . . . ..... .. .. .. . .. . . ... . . ..... ...... .. . . ..... . ..... . ... . .. . . . .. . . .. .. . . . . .... . . . ....... . . . . ..... . ............ .... . ....................................................... . . . . ......... . . .. ......................................... . . . . . . .. .. ... . . ..... .. .. .. ........ .. . . . . . . . . .. . . . . . . . . . .... . .. . ... . .... . . . .. . ... .. . ... .... . .
lowQualScore : 0 55 0 8 0 77 5555 0 0 0000000000000000000 0 000 0 55 0 5 55 99 0 6 0 6 11111 00 00 00 6 00 0 0 000 0 0 00000 555555 55 0 0 00000 0 00000 0 555 0 00 0 0 0 77 6 6 44 00 0 0 0 0 2222 3 4 4 8888888 0 4 7 7 66666 2 888888888888 0000 8 0000000000000000000000000000000000000000000000000000000 8 0 6 0 000000000 0 8 44 77777777777777777777777777777777777777777 7 9 7 7 0 4 77 00 999 6 7 00000 77 99 99 66666666 99 4 0 7 0 8 4 0 8 66 2 0 0 8 0 0 4 8 0 0000 0 00 4 000 8 8888 4 8 8 00 0 000 00 0 000 6666 0 0
consensus : CACTCCACAGTGACATCAAGGAGA-TGGT--ATATTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCATTTTT-A-ATAGCA-ATGAATCANAATAATA-CATATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACATGT--AC-CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-TAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTCT---T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTGTATGTAACCGTTTAT-----------CTATCTATCTAT-TC-ATCTA-TCT-G--TCT----TATCT-AT-CT---TCAGTCTATCCAT-C-AT-------CCATCCATAATGTTATAATAGTATGCAGTG-AT---------CGTT-AACTTCATCGTACATTTGCCCTGCA-------------CTTT-ACAC------------------CATTGT-TTACTTC-GCCAA-TTTATATCCAT-ATTCATACAAT-GCCAT-GACGTATATGTGCACGG--NAATTAGTA-AAACG-----AAGAC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAAGTCAAATATCAGTCA-GACACCAAATTTATAACGACATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTACAA---AATAGCAG-NNATACAGTGAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTTAATTCCATCATCG-TCAGAGTCAAAGA-TTCTCAGT
Reference ( family-7351 ) : CACTCCACAGTGACATCAAGGAGA-TGGT--ATATTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCATTTTT-A-ATAGCA-ATGAATCANAATAATA-CATATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACATGT--AC-CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-TAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTCT---T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTGTATGTAACCGTTTAC-----------CTATCTATCTAT-TC-ATCTAGCCT-G--TCTT---TATCT-AT-CT---TCAGTCTATCCAT-C-AT-------CCATCCATAATGTTATAATAGTATGCAGTG-AT---------CGTT-AACTTCATCGTACATTTGCCCTGCA-------------CTTT-ACAC------------------CATTGT-TTACTTC-GCCAA-TTTATATCCAT-ATTCATACAAT-GCCAT-GACGTATATGTGCACGG--NAATTAGTA-AAACG-----AAGAC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAAGTCAAATATCAGTCA-GACACCAAATTTATAACGACATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTACAA---AATAGCAG-NNATACAGTGAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTTAATTCCATCATCG-TCAGAGTCAAAGA-TTCTCAGT
gi|1 : AGGAGG-TA-T--ACATTATTTCCTTT-CAA--GTAATC----TTGATATG-T-AAAAGCCTTCATGGCG------------------AGAAA-A---CCA-TACA--ATG-TCATAACTGTTGG--TGAGCATTTTTCACATAGCA--TGAATCACAATAATA-CATATCACCCCT-----ACTC--AC--CC-----TATT-GTAATACTTTGAATT-TGC-CAAC---AATGAAGGAGGC-----TGATGCAGT------TACATGT--AC-CGTTAGAGCT-----A-AAA--C--AA-GTTG---A-TTGTCACATT-GTG-C-AT--CGGGTGA-TC-AATA--TTTC--TAATGCTTGTG--CATAA---TA-GCGTGGATTAAT-CCTTATAGAGCA-TG-CATGATGAAATC-AAGATTCT---T--AAA-CACTTGTCACACTGTTCCCAAATGCGGCG-ATGAAATC-ATGTATCCACACCTTACTATAATGCACTGTATGTAACCGTTTAC-----------CTATCTATCTATATCGATCTAATCTAG--TATTATATATCTGATGCTTAGTTAGTCTATCTAT-CTATTTTCATACCATCCATGA-GTTACAATAGTA-GCAGTGTAT---------CGTTGAACTTC--CGTAACTTTG-CCTG-A-------------CTTTAACATG-----------------CATTGTGTTACTTTGGCCAAGTTTAAATCCATGATCCATGCAA--GCCATGGGTGGATATGTGCACGA--CAATTAATA-AA--G-----AAGCCCGAAT--G-TGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAACTC-AATATTAGTCAGGACACCAAATTT-TAACGACATTATCTCTTTACATG-ATA-CTCAA-ATG---TTGTAGTGG-AGGCTTA-ATC----TAAT-TGGACTAT--AAGATTAA---AATAGCAGCGGATACAGTAAACAAT-AAAGTTAATTTCTA--AAT-GT---AAATCT-CAGA---GGAACTAATTTCCAAGTCAATT---TCATCG-TCAGAGTCAAAGA-TTCTCAGT
gi|10 : attcacccagatggcaagaagCACTCCACAGTGACATCAAGGAGA-TGTC--ATATTTTT-CCATT-CAAA-GTAATC----TTGATGTGCC-AGAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCAATTTT-G-ATAGCA-ATGAATCAGAATAATA-CATATGACCCCC-----ACCC--AC--CCA--A-TAGT-GTAATACTTTGAAAT-TAC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACACGT--AC-CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TCACCA--TT-GTG-C-ATA-TAGGTAA-TC-Aatccagattattattatctactatcagattcaacaacagccagctgagatgttctgaccgtctacatatcacaaactcaatgcagttcaggtggttagcagacgtgacacttaaaaaaaattatctgctgcaa
gi|11 : attAT-----------CTATCTATTTAT-CT-ATCT-GCCT-GTCTCTC---TATCT-AT-CT------GTCTATCCATCC-AT-------CCATCCATAATGTTATAATA-----------------------GTT-AACCAAATCGTACATTTGCCCTGCA-------------CTTT-ACACTTTACGTTTACAGTAACACATTGT-TTGCTTC-GCCAA-TTTATATCCAT-ATTCATACAAT-GCCAT-TACGCATATGTGCACGG--AAAGTAGTA-AAACG-----AAGAC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAAGTCAAAT
gi|12 : -ATGAATCAAAACAAT-------CACTCTC-----ACGC--TCTTCCC--ACTAA--GTAAT----TG--TT-TGC-CAAC---AAT-AGT-AG-C-----AGAT-C--T------GAAATGTTAAC---TTA-AGAT-----ATAAA--CCTAATAGTAT--AATTCTGA--TTCATG-CGATAATGGGTAAATCGAGTA--TTAC--TAATGCTTGTGACCATGAATATATTCTTGAATAATTCCCTTA-Acc
gi|13 : CACTCCACTATGACATCAAGGAGAATGGT--ATATATTTTCCTTTTCAAA-GTAATC----TTAATATGCTAAAAAGCCT-CTTCGC-------------------AGCAATATTTTCAGTACA--ATTCTCATAACTTTTGA--TG--------------AGCA-ATGAATCAGAA-AATATCATG-CACCCCC-----ACCC--A---CCC--A-TA----TAATACTTcc
gi|14 : cttA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-TAGTGTATAATT-CCTTA-ACACCA----C-TGG-AAAATCTGA-ATTCT---T--AA--CACTTGTC--------ACCAA-TGCAGCGTATGAAATA-A-----CCACACATCACTATAATAGAGTGTATGTAACTGgattt
gi|15 : ------------------CATTGT-T-ACTTC-GCCAG-TTTATATCT----TTCATTCAA----CAT--ACGTATACATGTAC-G--CA--TGATATAAATC-----AGGAT--AATGCGACGA--AAATAGACAA--TTTCAG-GGGATTTAAATGTAGAATCAc
gi|18 : taataCTCCGCAGTGACATCAAGGAGA-TGGT--ATA-----------------GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---ACA-CACA--AAT-TTATAACta
gi|2 : cttctCACTCAACAGTGACATCAAGGAGA-TGGT--ATATTTTT-CCTTT-CAAA-GTAATC----TTGATATACT-AAAAGCCT-CATCGCAGAAAACTTATACAACCGCAGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCATTTT--A-ATAGCA-ATGAATTAGAATAATA-CATATCACCC-------ACCC--AC--CCC--A-TATA-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACATGT--AC-TCTCA-AGTT-----A-AAAAGA--AA-AGCGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-ATTAA-TTGCTATAATGCTTGTGA-CATGAAAATA-TTGTGGATAATT-CCTTA-AAACCA----C-TGGTAAATCT-AA-ATTCT---TTCAAA-CACTTGTCACACTGTCACCAA-TGCAGCGTATGAAATA-A-----CCACATATCACTATATTACAG---AT-TAACTGTTTAT-----------CTATATATCTAT-TC-A-----------------------------T---TCA-----TTCAT------------CCATCCATAATGCTATAGCATTATGCAGTG-AT---------CGTT-A--TCCA-CATGCATTTGCCCTGCA-------------CTTT-AC----------------------------------------------ATCCAT-ATTCATACAAT-GTCAT-AACGTATATGTGCACGG--AAAATAGTA-AGACAAATTTAAGAC--AAT--GATGA--AAAT----AT--TTT--GTGTGACTT-GATGCAAAGTCAAATATCAGTCA-GACACCAAACTTATGACAACGTTATCTCTTTACGTA-ATA-C--------ACCATGTAGTGAAAGGCTTA-ATTAATGTAAT-TGGAATAT--AAGTACAATTTAATAGCAA-ATATACAATGAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---AGAACTAATTTCCAAGTTAATTCCATCATCG-TCAGAGTTAAAGA-TCCTCAGTggcttaacaag
gi|20 : ATCTATTGAT-TC-ATCTA-TCT-A--TC-----TATCT-AT-CCA--TCCGCCCATCCATCC-ATC------CCATCCATAgaagattatcattatcactatcagtaccaacgacagacactagaatgttctgaccgtctacatggtatgcacaaaactcgatgcagttaaggtggttcagcaaacagtgacacttaaaaaaattataagcttccacagt
gi|21 : atcg-ACAC-------------------ATTGT-TTACTTC-GCCAA-TTTATGCCGGT-ATTCA
gi|3 : ATCAAGAAGA-TGGT--AT---TTTTTCTTT-CAAA-GTAATC----TTGATATGTT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TAATAACTTTTGA--TTAGCATTTTT-A-ATAGCA-ATGAATCACAATAATA-CATATCACCCCC-----AACC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACATGT--AC-CGTTA-AGCT-----A-AAA--C--AA-AGTGT--A-ATGTAA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-CAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTC----T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTATATGTAACTGTTTAT-----------CTATCTATCT------ATCTA---------------------------------TCTATCC-----AT-------CCATCCATAATGTTATAACAGTATGCAGTG-ATCGTTATTACCGTT-AACTTCATCGTACATTTGCCCTGCANNNNNNNNNNNNNNNNN-NNNN------------------NNNNNN-NNNNNNN-NNNNN-NNNNNNNCCAT-ATTCATACAAT-GCCAT-AACGTATATGTGCACGG--AAATTAGTA-AAACA-----AAGAC--AAT--GATGA--A-------------T--ATG-GA--T-GATGCACAGTCAAATATCAGCCA-GACACCAAATTTATAACGGCATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGAAAAGCTTA-ATC----TTAT-TGGACTAT--AAGTACAA---AATAGCAG-TTATACAGTGAACAATAAAAGTTAGTTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTTAATTCCATCATCG-TCAAAGTCAAAGA-TTCTCAGT
gi|4 : CACTCCACAGTGATATCAAGAGGA-TGGT--ATATTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TCATAACTGTTGG--TGAGCATTTTT-A-ATAGCA-ATGAATCACAATAATA-CATATCACCCCC-----ACTC--AC--CCT--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACATGT--AC-CGTTA-AGCT-----A-AAA--C--AA-AGTGT--A-TTGTCA--TT-GTG-C-ATG-CGGGTGA-TC-AATAT-TTCC--TAATGCTTGTGA-CATAAAAATA-CAGTGGATAATA-CCTTA-AAACCAATG-CATGATGAAATC-AA-ATTC----T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATACATGTATCCACACATTACTATAATACACTGTATGTAACCGTTTACNNNNNNNNNNNNNNNNNNNNNNN-NN-NNNNNNNNN-N--NNNN---NNNNN-NN-NN---NNNNNNNNNNNNT-C-AT-------CCATCCATAATGTTACAATAGTATGCAGTG-AT---------CGTT-AACTTCATCGTACATTTGCCCTGCA-------------CTTT-ACAT------------------CATTGT-TTACTTT-GCCAA-TTAATATCCAT-ATCCATGCAAT-GCCAT-GGCGTATATGTGCACGA--CAATTAATA-AAACG-----AAGGC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAACTCAAATATTAGTCA-GACACCAAATTTATAACGACATTATCTCTTTACATG-ATA-CTCAA-ATGTCCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTTCAA---AATAGCAG-CGATACAGTAAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTCAAT----TCATCG-TCAGAGTCAAAGA-TTCTCAGTaaagattatcattatcactagtctatcagattcaacaacaaccattattacattcaacaacagccactagaatgttctgacc
gi|5 : CACTCCACAGTGACATCAAGGAGA-TGGT--ATATTTTT-----------------C----TTGGTATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--TCT-TTATAACTGTTGG--TGAACATTTTT-A-ATAGCA-ATGAATCACAATAATA-CACATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATAATTTGAATT-TGC-CAAC---AAC-AATGAA-C-----TGATGTAGTTACATGTACATGT--AC-CGTTA-AGCT-----A-AAT--C--AA-AGTGT--A-TTGTCA--TT-GTG-T-ATG-TGGGTAA-TC-AGTAA-TTGC--CAATGCTTGTGA-CATAAAAATA-CAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTAT---T---AA-CACTTGTCACATTGCCATCAA-TGTGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTGTATGTAACAGTTTAA-----------CGATCTATCTAT-T
gi|6 : CAT-ATTCA---AATAGTTAT-GA------TGTGCACGGAATAATTAGTA-TAATGC----AAGACTAAAG--GATGAATAAAT----AAACCTT--GTGT---CT-GTTTC----TTAAAT-------------CTA---TTA-AAC---ATTATCTTTCCA-ATGCATATCTCAATATGAACTTGTAGT-GAAAACTTACATCT---TAATATGGCTTATACAAGTACAA---G--AGCA---------------AATAAA--TTAGCTTTTGATAATAGTATAAAA--TCCAGATTTAGAACTTATTT-CAATTTAAATTCAGCATCGTTCAGACTCCAATATTTTTCAGTtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcataatggtataacagt
gi|7 : TCCACAGTGAC-TCAAGAGGA-TGGCTAATATTTTGTCTTTTTCAGACGTAATCAGACTTGATATGTT-AAA-GCCT--ATCGC-------------------AGACA-A---CCA-ATCATTAAT---ATCACTTTTGAATTTAGCATTTTT-A-A-AATACATGGATCATCATA-TA-CATAT-ACCTCTGATCTACCCTAAC--CCCCAA-TATTCGTAATACTTTGAATTATGCACGACCTGAAC-AATGAG-CGATATTGAT-CAGT------TA-ATGT--ACGTGTTT-AGCTTCTAAA-GAA--C--AA-AGTGTGTA-TGGTCGAGTT-GTGGC-ATC-TGGGTAA-TC-GGTAAATTGT--TAATTCGTGAGA-CATGCAAATC-TAGTGGATAATT-CATT--ACACAAATGTCATGGTAAATTC-AA-ATTTTCTCT--AAAGCACTTtaacagtttatcattgtcgattccacaacaccacttagattactgttctgacctatactaagtgtatgctcaaaactagatgcagtaaagtggttcagcagagacacttaaaaaaattatcggctgtcac
gi|8 : agCACTCAACAGTGACATCAAGGAGA-TGGT--GTATTTTT-CCGTT-CAAA-GTAGTC----TTGACATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TGCA--AAT-TTATTACTGTTGA--CGAGCATTTTA-A-ATAGCA-ATGAATCAGAATGATA-CATATTACCCCC-----ACCA--AC--CCC--A-AATA-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACCTGT--AC-CTTTA-AGCT-----A-A-------AA-AGCTC--A-TTCTCA--TT-ATG-C-ATG-TGGGTAA-TC-AGTAA-TTACTATAATGCTTGTGG-CATAATAATA-TAATCGACAATT-CCTTA-TAGCCA----C-TGGTAAATTT-AA-ATTttg
gi|9 : --TGAGCATATGT-A-ATAGCA-ATGAATCACAATAATA-CATATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---ATT-AATGAG-C-----TGATGCAGT------TACATGT--AC-CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAACA-TAGTGGATAATT-CTTTA-AAACCACTG-CATGGTAAAATC-AA-ATACT---TTAAAA-TACTTGTCCCACTGTCACCAA-TGTGGCGTATGAAATA-A-----TCACACATCACTA-AAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATCACCATCAGATTCAACATCAGCCACTCTAATGTTCTGACCGTCTACATGGTATGCACAAAACTCAATGCAGGTAAGGTGGTTCAGGAGACAGTGACACTTAAGAAAATAG
Unaligned ( gi|17 ): TAATTTAGTCATTCCCATCATTGGCAGATTCTCAGTAAAGATTATTATTATCACTGTCAGAGTCAACAACAGTCACTAGAATGTTCGGACCGTCTACGTGTG
Unaligned ( gi|19 ): ATCAGATTCAACAACAGCCACTAGAATGGTAATGTGTTCAAAACTCAATGCAGTTACGGTGTTTCAGCAGACAGTGACGCT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 3333333333333333333 11111 111111 11111 11 11 1111 1111111 22222 3333333333333 1111111111111111111111111111111111111111111111111111111111111 333333333 55555555555555555555555555555555555555555 11 11 22222 11 11111111 2222 11 111 1111 11 111 11 111
lowQualScore : 4 55 3 0 8 44 8888 4 4 5555555555555555555 4 777 4 55 4 0 55 44 4 3 1 3 99999 55 55 55 3 66 4 4 777 4 4 00000 111111 55 4 4 00000 4 66666 4 888 4 11 4 4 4 44 3 3 77 11 4 4 4 4 7777 7 4 4 6666666 5 1 5 5 88888 2 1111111111111 1111111111111111111111111111111111111111111111111111111111111 0 5 5 8 222222222 8 0 66 88888888888888888888888888888888888888888 5 2 5 5 5 2 00 11 888 1 5 00000 55 77 77 22222222 77 1 3 5 3 0 1 8 0 11 3 8 8 0 8 6 1 0 8 5555 8 11 1 444 0 8888 1 0 0 11 8 444 11 8 444 9999 8 8
lowQualScore : . .. . . . .. .... . . ................... . ... . .. . . .. .. . . . . ..... .. .. .. . .. . . ... . . ..... ...... .. . . ..... . ..... . ... . .. . . . .. . . .. .. . . . . .... . . . ....... . . . . ..... . ............. ............................................................. . . . . ......... . . .. ......................................... . . . . . . .. .. ... . . ..... .. .. .. ........ .. . . . . . . . . .. . . . . . . . . . .... . .. . ... . .... . . . .. . ... .. . ... .... . .
lowQualScore : 0 55 0 8 0 77 5555 0 0 0000000000000000000 0 000 0 55 0 5 55 99 0 6 0 6 11111 00 00 00 6 00 0 0 000 0 0 00000 555555 55 0 0 00000 0 00000 0 555 0 00 0 0 0 77 6 6 44 00 0 0 0 0 2222 3 4 4 8888888 0 4 7 7 66666 2 4444444444444 7777777777777777777777777777777777777777777777777777777777777 8 0 6 0 000000000 0 8 44 77777777777777777777777777777777777777777 7 9 7 7 0 4 77 00 999 6 7 00000 77 99 99 66666666 99 4 0 7 0 8 4 0 8 66 2 0 0 8 0 0 4 8 0 0000 0 00 4 000 8 8888 4 8 8 00 0 000 00 0 000 6666 0 0
consensus : CACTCCACAGTGACATCAAGGAGA-TGGT--ATATTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCATTTTT-A-ATAGCA-ATGAATCANAATAATA-CATATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACATGT--AC-CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-TAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTCT---T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTGTATGTAACCGTTTA-------------TCTATCTATCTAT-TC-ATCT-ATCT--TC-TATCTATCT---------TCAGTCTATCCAT-C-AT-------CCATCCATAATGTTATAATAGTATGCAGTG-AT---------CGTT-AACTTCATCGTACATTTGCCCTGCA-------------CTTT-ACAC------------------CATTGT-TTACTTC-GCCAA-TTTATATCCAT-ATTCATACAAT-GCCAT-GACGTATATGTGCACGG--NAATTAGTA-AAACG-----AAGAC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAAGTCAAATATCAGTCA-GACACCAAATTTATAACGACATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTACAA---AATAGCAG-NNATACAGTGAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTTAATTCCATCATCG-TCAGAGTCAAAGA-TTCTCAGT
Reference ( family-7351 ) : CACTCCACAGTGACATCAAGGAGA-TGGT--ATATTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCATTTTT-A-ATAGCA-ATGAATCANAATAATA-CATATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACATGT--AC-CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-TAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTCT---T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTGTATGTAACCGTTTA-------------TCTATCTATCTAT-TC-ATCT-ATCT-GTCTTATCTATCT---------TCAGTCTATCCAT-C-AT-------CCATCCATAATGTTATAATAGTATGCAGTG-AT---------CGTT-AACTTCATCGTACATTTGCCCTGCA-------------CTTT-ACAC------------------CATTGT-TTACTTC-GCCAA-TTTATATCCAT-ATTCATACAAT-GCCAT-GACGTATATGTGCACGG--NAATTAGTA-AAACG-----AAGAC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAAGTCAAATATCAGTCA-GACACCAAATTTATAACGACATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTACAA---AATAGCAG-NNATACAGTGAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTTAATTCCATCATCG-TCAGAGTCAAAGA-TTCTCAGT
gi|1 : AGGAGG-TA-T--ACATTATTTCCTTT-CAA--GTAATC----TTGATATG-T-AAAAGCCTTCATGGCG------------------AGAAA-A---CCA-TACA--ATG-TCATAACTGTTGG--TGAGCATTTTTCACATAGCA--TGAATCACAATAATA-CATATCACCCCT-----ACTC--AC--CC-----TATT-GTAATACTTTGAATT-TGC-CAAC---AATGAAGGAGGC-----TGATGCAGT------TACATGT--AC-CGTTAGAGCT-----A-AAA--C--AA-GTTG---A-TTGTCACATT-GTG-C-AT--CGGGTGA-TC-AATA--TTTC--TAATGCTTGTG--CATAA---TA-GCGTGGATTAAT-CCTTATAGAGCA-TG-CATGATGAAATC-AAGATTCT---T--AAA-CACTTGTCACACTGTTCCCAAATGCGGCG-ATGAAATC-ATGTATCCACACCTTACTATAATGCACTGTATGTAACCGTTTA-------------CCTATCTATCTATATCGATCTAATCTAGTATTATATATCTGATGCTTAGTTAGTCTATCTAT-CTATTTTCATACCATCCATGA-GTTACAATAGTA-GCAGTGTAT---------CGTTGAACTTC--CGTAACTTTG-CCTG-A-------------CTTTAACATG-----------------CATTGTGTTACTTTGGCCAAGTTTAAATCCATGATCCATGCAA--GCCATGGGTGGATATGTGCACGA--CAATTAATA-AA--G-----AAGCCCGAAT--G-TGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAACTC-AATATTAGTCAGGACACCAAATTT-TAACGACATTATCTCTTTACATG-ATA-CTCAA-ATG---TTGTAGTGG-AGGCTTA-ATC----TAAT-TGGACTAT--AAGATTAA---AATAGCAGCGGATACAGTAAACAAT-AAAGTTAATTTCTA--AAT-GT---AAATCT-CAGA---GGAACTAATTTCCAAGTCAATT---TCATCG-TCAGAGTCAAAGA-TTCTCAGT
gi|10 : attcacccagatggcaagaagCACTCCACAGTGACATCAAGGAGA-TGTC--ATATTTTT-CCATT-CAAA-GTAATC----TTGATGTGCC-AGAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCAATTTT-G-ATAGCA-ATGAATCAGAATAATA-CATATGACCCCC-----ACCC--AC--CCA--A-TAGT-GTAATACTTTGAAAT-TAC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACACGT--AC-CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TCACCA--TT-GTG-C-ATA-TAGGTAA-TC-Aatccagattattattatctactatcagattcaacaacagccagctgagatgttctgaccgtctacatatcacaaactcaatgcagttcaggtggttagcagacgtgacacttaaaaaaaattatctgctgcaa
gi|11 : attTCTA-------------TCTATTTATCTAT-CT-GCCT-GTCT-CTC-TATCTATCT------------GTCTATCCATCC-AT-------CCATCCATAATGTTATAATA-----------------------GTT-AACCAAATCGTACATTTGCCCTGCA-------------CTTT-ACACTTTACGTTTACAGTAACACATTGT-TTGCTTC-GCCAA-TTTATATCCAT-ATTCATACAAT-GCCAT-TACGCATATGTGCACGG--AAAGTAGTA-AAACG-----AAGAC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAAGTCAAAT
gi|12 : a-ATGAATCAAAACAAT-------CACTCTC-----ACGC--TCTTCCC--ACTAA--GTAAT----TG--TT-TGC-CAAC---AAT-AGT-AG-C-----AGAT-C--T------GAAATGTTAAC---TTA-AGAT-----ATAAA--CCTAATAGTAT--AATTCTGA--TTCATG-CGATAATGGGTAAATCGAGTA--TTAC--TAATGCTTGTGACCATGAATATATTCTTGAATAATTCCCTTA-Acc
gi|13 : CACTCCACTATGACATCAAGGAGAATGGT--ATATATTTTCCTTTTCAAA-GTAATC----TTAATATGCTAAAAAGCCT-CTTCGC-------------------AGCAATATTTTCAGTACA--ATTCTCATAACTTTTGA--TG--------------AGCA-ATGAATCAGAA-AATATCATG-CACCCCC-----ACCC--A---CCC--A-TA----TAATACTTcc
gi|14 : cttA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-TAGTGTATAATT-CCTTA-ACACCA----C-TGG-AAAATCTGA-ATTCT---T--AA--CACTTGTC--------ACCAA-TGCAGCGTATGAAATA-A-----CCACACATCACTATAATAGAGTGTATGTAACTGgattt
gi|15 : ------------------CATTGT-T-ACTTC-GCCAG-TTTATATCT----TTCATTCAA----CAT--ACGTATACATGTAC-G--CA--TGATATAAATC-----AGGAT--AATGCGACGA--AAATAGACAA--TTTCAG-GGGATTTAAATGTAGAATCAc
gi|18 : taataCTCCGCAGTGACATCAAGGAGA-TGGT--ATA-----------------GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---ACA-CACA--AAT-TTATAACta
gi|2 : cttctCACTCAACAGTGACATCAAGGAGA-TGGT--ATATTTTT-CCTTT-CAAA-GTAATC----TTGATATACT-AAAAGCCT-CATCGCAGAAAACTTATACAACCGCAGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCATTTT--A-ATAGCA-ATGAATTAGAATAATA-CATATCACCC-------ACCC--AC--CCC--A-TATA-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACATGT--AC-TCTCA-AGTT-----A-AAAAGA--AA-AGCGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-ATTAA-TTGCTATAATGCTTGTGA-CATGAAAATA-TTGTGGATAATT-CCTTA-AAACCA----C-TGGTAAATCT-AA-ATTCT---TTCAAA-CACTTGTCACACTGTCACCAA-TGCAGCGTATGAAATA-A-----CCACATATCACTATATTACAG---AT-TAACTGTTTA-------------TCTATATATCTAT-TC-A---------------------T---------TCATTC----------AT-------CCATCCATAATGCTATAGCATTATGCAGTG-AT---------CGTT-A--TCCA-CATGCATTTGCCCTGCA-------------CTTT-AC----------------------------------------------ATCCAT-ATTCATACAAT-GTCAT-AACGTATATGTGCACGG--AAAATAGTA-AGACAAATTTAAGAC--AAT--GATGA--AAAT----AT--TTT--GTGTGACTT-GATGCAAAGTCAAATATCAGTCA-GACACCAAACTTATGACAACGTTATCTCTTTACGTA-ATA-C--------ACCATGTAGTGAAAGGCTTA-ATTAATGTAAT-TGGAATAT--AAGTACAATTTAATAGCAA-ATATACAATGAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---AGAACTAATTTCCAAGTTAATTCCATCATCG-TCAGAGTTAAAGA-TCCTCAGTggcttaacaag
gi|20 : A-------------TCGATCTATTGAT-TC-ATCT-ATCT-ATC-TATCTATCCA--------TCCGCCCATCCATCC-ATC------CCATCCATAgaagattatcattatcactatcagtaccaacgacagacactagaatgttctgaccgtctacatggtatgcacaaaactcgatgcagttaaggtggttcagcaaacagtgacacttaaaaaaattataagcttccacagt
gi|21 : -ACAC-------------------ATTGT-TTACTTC-GCCAA-TTTATGCCGGT-ATTCA
gi|3 : ATCAAGAAGA-TGGT--AT---TTTTTCTTT-CAAA-GTAATC----TTGATATGTT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TAATAACTTTTGA--TTAGCATTTTT-A-ATAGCA-ATGAATCACAATAATA-CATATCACCCCC-----AACC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACATGT--AC-CGTTA-AGCT-----A-AAA--C--AA-AGTGT--A-ATGTAA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-CAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTC----T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTATATGTAACTGTTTA-------------TCTATCTATCT------ATCT-A------------------------------TCTATCCA-----T-------CCATCCATAATGTTATAACAGTATGCAGTG-ATCGTTATTACCGTT-AACTTCATCGTACATTTGCCCTGCANNNNNNNNNNNNNNNNN-NNNN------------------NNNNNN-NNNNNNN-NNNNN-NNNNNNNCCAT-ATTCATACAAT-GCCAT-AACGTATATGTGCACGG--AAATTAGTA-AAACA-----AAGAC--AAT--GATGA--A-------------T--ATG-GA--T-GATGCACAGTCAAATATCAGCCA-GACACCAAATTTATAACGGCATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGAAAAGCTTA-ATC----TTAT-TGGACTAT--AAGTACAA---AATAGCAG-TTATACAGTGAACAATAAAAGTTAGTTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTTAATTCCATCATCG-TCAAAGTCAAAGA-TTCTCAGT
gi|4 : CACTCCACAGTGATATCAAGAGGA-TGGT--ATATTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TCATAACTGTTGG--TGAGCATTTTT-A-ATAGCA-ATGAATCACAATAATA-CATATCACCCCC-----ACTC--AC--CCT--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACATGT--AC-CGTTA-AGCT-----A-AAA--C--AA-AGTGT--A-TTGTCA--TT-GTG-C-ATG-CGGGTGA-TC-AATAT-TTCC--TAATGCTTGTGA-CATAAAAATA-CAGTGGATAATA-CCTTA-AAACCAATG-CATGATGAAATC-AA-ATTC----T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATACATGTATCCACACATTACTATAATACACTGTATGTAACCGTTTACNNNNNNNNNNNNNNNNNNNNNNNNN-NN-NNNN-NNNN-NNNNNNNNNNNNN---------NNNNNNNNNNNNT-C-AT-------CCATCCATAATGTTACAATAGTATGCAGTG-AT---------CGTT-AACTTCATCGTACATTTGCCCTGCA-------------CTTT-ACAT------------------CATTGT-TTACTTT-GCCAA-TTAATATCCAT-ATCCATGCAAT-GCCAT-GGCGTATATGTGCACGA--CAATTAATA-AAACG-----AAGGC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAACTCAAATATTAGTCA-GACACCAAATTTATAACGACATTATCTCTTTACATG-ATA-CTCAA-ATGTCCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTTCAA---AATAGCAG-CGATACAGTAAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTCAAT----TCATCG-TCAGAGTCAAAGA-TTCTCAGTaaagattatcattatcactagtctatcagattcaacaacaaccattattacattcaacaacagccactagaatgttctgacc
gi|5 : CACTCCACAGTGACATCAAGGAGA-TGGT--ATATTTTT-----------------C----TTGGTATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--TCT-TTATAACTGTTGG--TGAACATTTTT-A-ATAGCA-ATGAATCACAATAATA-CACATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATAATTTGAATT-TGC-CAAC---AAC-AATGAA-C-----TGATGTAGTTACATGTACATGT--AC-CGTTA-AGCT-----A-AAT--C--AA-AGTGT--A-TTGTCA--TT-GTG-T-ATG-TGGGTAA-TC-AGTAA-TTGC--CAATGCTTGTGA-CATAAAAATA-CAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTAT---T---AA-CACTTGTCACATTGCCATCAA-TGTGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTGTATGTAACAGTTTA-------------ACGATCTATCTAT-T
gi|6 : CAT-ATTCA---AATAGTTAT-GA------TGTGCACGGAATAATTAGTA-TAATGC----AAGACTAAAG--GATGAATAAAT----AAACCTT--GTGT---CT-GTTTC----TTAAAT-------------CTA---TTA-AAC---ATTATCTTTCCA-ATGCATATCTCAATATGAACTTGTAGT-GAAAACTTACATCT---TAATATGGCTTATACAAGTACAA---G--AGCA---------------AATAAA--TTAGCTTTTGATAATAGTATAAAA--TCCAGATTTAGAACTTATTT-CAATTTAAATTCAGCATCGTTCAGACTCCAATATTTTTCAGTtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcataatggtataacagt
gi|7 : TCCACAGTGAC-TCAAGAGGA-TGGCTAATATTTTGTCTTTTTCAGACGTAATCAGACTTGATATGTT-AAA-GCCT--ATCGC-------------------AGACA-A---CCA-ATCATTAAT---ATCACTTTTGAATTTAGCATTTTT-A-A-AATACATGGATCATCATA-TA-CATAT-ACCTCTGATCTACCCTAAC--CCCCAA-TATTCGTAATACTTTGAATTATGCACGACCTGAAC-AATGAG-CGATATTGAT-CAGT------TA-ATGT--ACGTGTTT-AGCTTCTAAA-GAA--C--AA-AGTGTGTA-TGGTCGAGTT-GTGGC-ATC-TGGGTAA-TC-GGTAAATTGT--TAATTCGTGAGA-CATGCAAATC-TAGTGGATAATT-CATT--ACACAAATGTCATGGTAAATTC-AA-ATTTTCTCT--AAAGCACTTtaacagtttatcattgtcgattccacaacaccacttagattactgttctgacctatactaagtgtatgctcaaaactagatgcagtaaagtggttcagcagagacacttaaaaaaattatcggctgtcac
gi|8 : agCACTCAACAGTGACATCAAGGAGA-TGGT--GTATTTTT-CCGTT-CAAA-GTAGTC----TTGACATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TGCA--AAT-TTATTACTGTTGA--CGAGCATTTTA-A-ATAGCA-ATGAATCAGAATGATA-CATATTACCCCC-----ACCA--AC--CCC--A-AATA-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACCTGT--AC-CTTTA-AGCT-----A-A-------AA-AGCTC--A-TTCTCA--TT-ATG-C-ATG-TGGGTAA-TC-AGTAA-TTACTATAATGCTTGTGG-CATAATAATA-TAATCGACAATT-CCTTA-TAGCCA----C-TGGTAAATTT-AA-ATTttg
gi|9 : --TGAGCATATGT-A-ATAGCA-ATGAATCACAATAATA-CATATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---ATT-AATGAG-C-----TGATGCAGT------TACATGT--AC-CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAACA-TAGTGGATAATT-CTTTA-AAACCACTG-CATGGTAAAATC-AA-ATACT---TTAAAA-TACTTGTCCCACTGTCACCAA-TGTGGCGTATGAAATA-A-----TCACACATCACTA-AAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATCACCATCAGATTCAACATCAGCCACTCTAATGTTCTGACCGTCTACATGGTATGCACAAAACTCAATGCAGGTAAGGTGGTTCAGGAGACAGTGACACTTAAGAAAATAG
Unaligned ( gi|17 ): TAATTTAGTCATTCCCATCATTGGCAGATTCTCAGTAAAGATTATTATTATCACTGTCAGAGTCAACAACAGTCACTAGAATGTTCGGACCGTCTACGTGTG
Unaligned ( gi|19 ): ATCAGATTCAACAACAGCCACTAGAATGGTAATGTGTTCAAAACTCAATGCAGTTACGGTGTTTCAGCAGACAGTGACGCT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 3333333333333333333 11111 111111 11111 11 11 1111 1111111 22222 333333333333333 1111111111111111111111111111111111111111111111111111111111111 333333333 55555555555555555555555555555555555555555 11 11 22222 11 11111111 2222 11 111 1111 11 111 11 111
lowQualScore : 4 55 3 0 8 44 8888 4 4 5555555555555555555 4 777 4 55 4 0 55 44 4 3 1 3 99999 55 55 55 3 66 4 4 777 4 4 00000 111111 55 4 4 00000 4 66666 4 888 4 11 4 4 4 44 3 3 77 11 4 4 4 4 7777 7 4 4 6666666 5 1 5 5 88888 2 555555555555555 6666666666666666666666666666666666666666666666666666666666666 2 5 8 222222222 8 0 66 88888888888888888888888888888888888888888 5 2 5 5 5 2 00 11 888 1 5 00000 55 77 77 22222222 77 1 3 5 3 0 1 8 0 11 3 8 8 0 8 6 1 0 8 5555 8 11 1 444 0 8888 1 0 0 11 8 444 11 8 444 9999 8 8
lowQualScore : . .. . . . .. .... . . ................... . ... . .. . . .. .. . . . . ..... .. .. .. . .. . . ... . . ..... ...... .. . . ..... . ..... . ... . .. . . . .. . . .. .. . . . . .... . . . ....... . . . . ..... . ............... ............................................................. . . . ......... . . .. ......................................... . . . . . . .. .. ... . . ..... .. .. .. ........ .. . . . . . . . . .. . . . . . . . . . .... . .. . ... . .... . . . .. . ... .. . ... .... . .
lowQualScore : 0 55 0 8 0 77 5555 0 0 0000000000000000000 0 000 0 55 0 5 55 99 0 6 0 6 11111 00 00 00 6 00 0 0 000 0 0 00000 555555 55 0 0 00000 0 00000 0 555 0 00 0 0 0 77 6 6 44 00 0 0 0 0 2222 3 4 4 8888888 0 4 7 7 66666 2 777777777777777 3333333333333333333333333333333333333333333333333333333333333 5 6 0 000000000 0 8 44 77777777777777777777777777777777777777777 7 9 7 7 0 4 77 00 999 6 7 00000 77 99 99 66666666 99 4 0 7 0 8 4 0 8 66 2 0 0 8 0 0 4 8 0 0000 0 00 4 000 8 8888 4 8 8 00 0 000 00 0 000 6666 0 0
consensus : CACTCCACAGTGACATCAAGGAGA-TGGT--ATATTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCATTTTT-A-ATAGCA-ATGAATCANAATAATA-CATATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACATGT--AC-CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-TAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTCT---T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTGTATGTAACCGTTTA---------------TCTATCTATCTAT-TC-GTCT-ATCT--T-CTATCTATCT---------T--GTCTATCCAT-C-AT-------CCATCCATAATGTTATAACAGTATGCAGTG-AT---------CGTT-AACTTCATCGTACATTTGCCCTGCA-------------CTTT-ACAC------------------CATTGT-TTACTTC-GCCAA-TTTATATCCAT-ATTCATACAAT-GCCAT-GACGTATATGTGCACGG--NAATTAGTA-AAACG-----AAGAC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAAGTCAAATATCAGTCA-GACACCAAATTTATAACGACATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTACAA---AATAGCAG-NNATACAGTGAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTTAATTCCATCATCG-TCAGAGTCAAAGA-TTCTCAGT
Reference ( family-7351 ) : CACTCCACAGTGACATCAAGGAGA-TGGT--ATATTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCATTTTT-A-ATAGCA-ATGAATCANAATAATA-CATATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACATGT--AC-CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-TAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTCT---T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTGTATGTAACCGTTTA---------------TCTATCTATCTAT-TC-ATCT-ATCT--T-CTATCTATCT---------TCAGTCTATCCAT-C-AT-------CCATCCATAATGTTATAATAGTATGCAGTG-AT---------CGTT-AACTTCATCGTACATTTGCCCTGCA-------------CTTT-ACAC------------------CATTGT-TTACTTC-GCCAA-TTTATATCCAT-ATTCATACAAT-GCCAT-GACGTATATGTGCACGG--NAATTAGTA-AAACG-----AAGAC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAAGTCAAATATCAGTCA-GACACCAAATTTATAACGACATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTACAA---AATAGCAG-NNATACAGTGAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTTAATTCCATCATCG-TCAGAGTCAAAGA-TTCTCAGT
gi|1 : AGGAGG-TA-T--ACATTATTTCCTTT-CAA--GTAATC----TTGATATG-T-AAAAGCCTTCATGGCG------------------AGAAA-A---CCA-TACA--ATG-TCATAACTGTTGG--TGAGCATTTTTCACATAGCA--TGAATCACAATAATA-CATATCACCCCT-----ACTC--AC--CC-----TATT-GTAATACTTTGAATT-TGC-CAAC---AATGAAGGAGGC-----TGATGCAGT------TACATGT--AC-CGTTAGAGCT-----A-AAA--C--AA-GTTG---A-TTGTCACATT-GTG-C-AT--CGGGTGA-TC-AATA--TTTC--TAATGCTTGTG--CATAA---TA-GCGTGGATTAAT-CCTTATAGAGCA-TG-CATGATGAAATC-AAGATTCT---T--AAA-CACTTGTCACACTGTTCCCAAATGCGGCG-ATGAAATC-ATGTATCCACACCTTACTATAATGCACTGTATGTAACCGTTTA---------------CCTATCTATCTATATCGATCTAATCTAGTATTATATATCTGATGCTTAGTTAGTCTATCTAT-CTATTTTCATACCATCCATGA-GTTACAATAGTA-GCAGTGTAT---------CGTTGAACTTC--CGTAACTTTG-CCTG-A-------------CTTTAACATG-----------------CATTGTGTTACTTTGGCCAAGTTTAAATCCATGATCCATGCAA--GCCATGGGTGGATATGTGCACGA--CAATTAATA-AA--G-----AAGCCCGAAT--G-TGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAACTC-AATATTAGTCAGGACACCAAATTT-TAACGACATTATCTCTTTACATG-ATA-CTCAA-ATG---TTGTAGTGG-AGGCTTA-ATC----TAAT-TGGACTAT--AAGATTAA---AATAGCAGCGGATACAGTAAACAAT-AAAGTTAATTTCTA--AAT-GT---AAATCT-CAGA---GGAACTAATTTCCAAGTCAATT---TCATCG-TCAGAGTCAAAGA-TTCTCAGT
gi|10 : attcacccagatggcaagaagCACTCCACAGTGACATCAAGGAGA-TGTC--ATATTTTT-CCATT-CAAA-GTAATC----TTGATGTGCC-AGAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCAATTTT-G-ATAGCA-ATGAATCAGAATAATA-CATATGACCCCC-----ACCC--AC--CCA--A-TAGT-GTAATACTTTGAAAT-TAC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACACGT--AC-CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TCACCA--TT-GTG-C-ATA-TAGGTAA-TC-Aatccagattattattatctactatcagattcaacaacagccagctgagatgttctgaccgtctacatatcacaaactcaatgcagttcaggtggttagcagacgtgacacttaaaaaaaattatctgctgcaa
gi|11 : attTCTA---------------TCTATTTATCTAT-CT-GCCT-GTCTC-T-CTATCTATCT------------GTCTATCCATCC-AT-------CCATCCATAATGTTATAATA-----------------------GTT-AACCAAATCGTACATTTGCCCTGCA-------------CTTT-ACACTTTACGTTTACAGTAACACATTGT-TTGCTTC-GCCAA-TTTATATCCAT-ATTCATACAAT-GCCAT-TACGCATATGTGCACGG--AAAGTAGTA-AAACG-----AAGAC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAAGTCAAAT
gi|12 : a-ATGAATCAAAACAAT-------CACTCTC-----ACGC--TCTTCCC--ACTAA--GTAAT----TG--TT-TGC-CAAC---AAT-AGT-AG-C-----AGAT-C--T------GAAATGTTAAC---TTA-AGAT-----ATAAA--CCTAATAGTAT--AATTCTGA--TTCATG-CGATAATGGGTAAATCGAGTA--TTAC--TAATGCTTGTGACCATGAATATATTCTTGAATAATTCCCTTA-Acc
gi|13 : CACTCCACTATGACATCAAGGAGAATGGT--ATATATTTTCCTTTTCAAA-GTAATC----TTAATATGCTAAAAAGCCT-CTTCGC-------------------AGCAATATTTTCAGTACA--ATTCTCATAACTTTTGA--TG--------------AGCA-ATGAATCAGAA-AATATCATG-CACCCCC-----ACCC--A---CCC--A-TA----TAATACTTcc
gi|14 : cttA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-TAGTGTATAATT-CCTTA-ACACCA----C-TGG-AAAATCTGA-ATTCT---T--AA--CACTTGTC--------ACCAA-TGCAGCGTATGAAATA-A-----CCACACATCACTATAATAGAGTGTATGTAACTGgattt
gi|15 : ------------------CATTGT-T-ACTTC-GCCAG-TTTATATCT----TTCATTCAA----CAT--ACGTATACATGTAC-G--CA--TGATATAAATC-----AGGAT--AATGCGACGA--AAATAGACAA--TTTCAG-GGGATTTAAATGTAGAATCAc
gi|18 : taataCTCCGCAGTGACATCAAGGAGA-TGGT--ATA-----------------GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---ACA-CACA--AAT-TTATAACta
gi|2 : cttctCACTCAACAGTGACATCAAGGAGA-TGGT--ATATTTTT-CCTTT-CAAA-GTAATC----TTGATATACT-AAAAGCCT-CATCGCAGAAAACTTATACAACCGCAGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCATTTT--A-ATAGCA-ATGAATTAGAATAATA-CATATCACCC-------ACCC--AC--CCC--A-TATA-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACATGT--AC-TCTCA-AGTT-----A-AAAAGA--AA-AGCGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-ATTAA-TTGCTATAATGCTTGTGA-CATGAAAATA-TTGTGGATAATT-CCTTA-AAACCA----C-TGGTAAATCT-AA-ATTCT---TTCAAA-CACTTGTCACACTGTCACCAA-TGCAGCGTATGAAATA-A-----CCACATATCACTATATTACAG---AT-TAACTGTTTA---------------TCTATATATCTAT-TC-ATTC-AT-------------------------------------T-C-AT-------CCATCCATAATGCTATAGCATTATGCAGTG-AT---------CGTT-A--TCCA-CATGCATTTGCCCTGCA-------------CTTT-AC----------------------------------------------ATCCAT-ATTCATACAAT-GTCAT-AACGTATATGTGCACGG--AAAATAGTA-AGACAAATTTAAGAC--AAT--GATGA--AAAT----AT--TTT--GTGTGACTT-GATGCAAAGTCAAATATCAGTCA-GACACCAAACTTATGACAACGTTATCTCTTTACGTA-ATA-C--------ACCATGTAGTGAAAGGCTTA-ATTAATGTAAT-TGGAATAT--AAGTACAATTTAATAGCAA-ATATACAATGAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---AGAACTAATTTCCAAGTTAATTCCATCATCG-TCAGAGTTAAAGA-TCCTCAGTggcttaacaag
gi|20 : A---------------TCGATCTATTGAT-TC-ATCT-ATCTA-T-CTATCTATCCA--------TCCGCCCATCCATCC-ATC------CCATCCATAgaagattatcattatcactatcagtaccaacgacagacactagaatgttctgaccgtctacatggtatgcacaaaactcgatgcagttaaggtggttcagcaaacagtgacacttaaaaaaattataagcttccacagt
gi|21 : -ACAC-------------------ATTGT-TTACTTC-GCCAA-TTTATGCCGGT-ATTCA
gi|3 : ATCAAGAAGA-TGGT--AT---TTTTTCTTT-CAAA-GTAATC----TTGATATGTT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TAATAACTTTTGA--TTAGCATTTTT-A-ATAGCA-ATGAATCACAATAATA-CATATCACCCCC-----AACC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACATGT--AC-CGTTA-AGCT-----A-AAA--C--AA-AGTGT--A-ATGTAA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-CAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTC----T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTATATGTAACTGTTTA---------------TCTATCTATCTA----------------T-CTATCTATC------------------------C-AT-------CCATCCATAATGTTATAACAGTATGCAGTG-ATCGTTATTACCGTT-AACTTCATCGTACATTTGCCCTGCANNNNNNNNNNNNNNNNN-NNNN------------------NNNNNN-NNNNNNN-NNNNN-NNNNNNNCCAT-ATTCATACAAT-GCCAT-AACGTATATGTGCACGG--AAATTAGTA-AAACA-----AAGAC--AAT--GATGA--A-------------T--ATG-GA--T-GATGCACAGTCAAATATCAGCCA-GACACCAAATTTATAACGGCATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGAAAAGCTTA-ATC----TTAT-TGGACTAT--AAGTACAA---AATAGCAG-TTATACAGTGAACAATAAAAGTTAGTTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTTAATTCCATCATCG-TCAAAGTCAAAGA-TTCTCAGT
gi|4 : CACTCCACAGTGATATCAAGAGGA-TGGT--ATATTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TCATAACTGTTGG--TGAGCATTTTT-A-ATAGCA-ATGAATCACAATAATA-CATATCACCCCC-----ACTC--AC--CCT--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACATGT--AC-CGTTA-AGCT-----A-AAA--C--AA-AGTGT--A-TTGTCA--TT-GTG-C-ATG-CGGGTGA-TC-AATAT-TTCC--TAATGCTTGTGA-CATAAAAATA-CAGTGGATAATA-CCTTA-AAACCAATG-CATGATGAAATC-AA-ATTC----T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATACATGTATCCACACATTACTATAATACACTGTATGTAACCGTTTACNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN-NNNN-NNNN--N-NNNNNNNNNN---------NNNNNNNNNNNNT-C-AT-------CCATCCATAATGTTACAATAGTATGCAGTG-AT---------CGTT-AACTTCATCGTACATTTGCCCTGCA-------------CTTT-ACAT------------------CATTGT-TTACTTT-GCCAA-TTAATATCCAT-ATCCATGCAAT-GCCAT-GGCGTATATGTGCACGA--CAATTAATA-AAACG-----AAGGC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAACTCAAATATTAGTCA-GACACCAAATTTATAACGACATTATCTCTTTACATG-ATA-CTCAA-ATGTCCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTTCAA---AATAGCAG-CGATACAGTAAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTCAAT----TCATCG-TCAGAGTCAAAGA-TTCTCAGTaaagattatcattatcactagtctatcagattcaacaacaaccattattacattcaacaacagccactagaatgttctgacc
gi|5 : CACTCCACAGTGACATCAAGGAGA-TGGT--ATATTTTT-----------------C----TTGGTATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--TCT-TTATAACTGTTGG--TGAACATTTTT-A-ATAGCA-ATGAATCACAATAATA-CACATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATAATTTGAATT-TGC-CAAC---AAC-AATGAA-C-----TGATGTAGTTACATGTACATGT--AC-CGTTA-AGCT-----A-AAT--C--AA-AGTGT--A-TTGTCA--TT-GTG-T-ATG-TGGGTAA-TC-AGTAA-TTGC--CAATGCTTGTGA-CATAAAAATA-CAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTAT---T---AA-CACTTGTCACATTGCCATCAA-TGTGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTGTATGTAACAGTTTA---------------ACGATCTATCTAT------------T--T-NNNNNNNNNN---------NNNNNNNNNNNNN-N-NN-------NNNNGCATAATGGTATAACAGT
gi|6 : CAT-ATTCA---AATAGTTAT-GA------TGTGCACGGAATAATTAGTA-TAATGC----AAGACTAAAG--GATGAATAAAT----AAACCTT--GTGT---CT-GTTTC----TTAAAT-------------CTA---TTA-AAC---ATTATCTTTCCA-ATGCATATCTCAATATGAACTTGTAGT-GAAAACTTACATCT---TAATATGGCTTATACAAGTACAA---G--AGCA---------------AATAAA--TTAGCTTTTGATAATAGTATAAAA--TCCAGATTTAGAACTTATTT-CAATTTAAATTCAGCATCGTTCAGACTCCAATATTTTTCAGT
gi|7 : TCCACAGTGAC-TCAAGAGGA-TGGCTAATATTTTGTCTTTTTCAGACGTAATCAGACTTGATATGTT-AAA-GCCT--ATCGC-------------------AGACA-A---CCA-ATCATTAAT---ATCACTTTTGAATTTAGCATTTTT-A-A-AATACATGGATCATCATA-TA-CATAT-ACCTCTGATCTACCCTAAC--CCCCAA-TATTCGTAATACTTTGAATTATGCACGACCTGAAC-AATGAG-CGATATTGAT-CAGT------TA-ATGT--ACGTGTTT-AGCTTCTAAA-GAA--C--AA-AGTGTGTA-TGGTCGAGTT-GTGGC-ATC-TGGGTAA-TC-GGTAAATTGT--TAATTCGTGAGA-CATGCAAATC-TAGTGGATAATT-CATT--ACACAAATGTCATGGTAAATTC-AA-ATTTTCTCT--AAAGCACTTtaacagtttatcattgtcgattccacaacaccacttagattactgttctgacctatactaagtgtatgctcaaaactagatgcagtaaagtggttcagcagagacacttaaaaaaattatcggctgtcac
gi|8 : agCACTCAACAGTGACATCAAGGAGA-TGGT--GTATTTTT-CCGTT-CAAA-GTAGTC----TTGACATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TGCA--AAT-TTATTACTGTTGA--CGAGCATTTTA-A-ATAGCA-ATGAATCAGAATGATA-CATATTACCCCC-----ACCA--AC--CCC--A-AATA-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGT------TACCTGT--AC-CTTTA-AGCT-----A-A-------AA-AGCTC--A-TTCTCA--TT-ATG-C-ATG-TGGGTAA-TC-AGTAA-TTACTATAATGCTTGTGG-CATAATAATA-TAATCGACAATT-CCTTA-TAGCCA----C-TGGTAAATTT-AA-ATTttg
gi|9 : --TGAGCATATGT-A-ATAGCA-ATGAATCACAATAATA-CATATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---ATT-AATGAG-C-----TGATGCAGT------TACATGT--AC-CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAACA-TAGTGGATAATT-CTTTA-AAACCACTG-CATGGTAAAATC-AA-ATACT---TTAAAA-TACTTGTCCCACTGTCACCAA-TGTGGCGTATGAAATA-A-----TCACACATCACTA-AAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATCACCATCAGATTCAACATCAGCCACTCTAATGTTCTGACCGTCTACATGGTATGCACAAAACTCAATGCAGGTAAGGTGGTTCAGGAGACAGTGACACTTAAGAAAATAG
Unaligned ( gi|17 ): TAATTTAGTCATTCCCATCATTGGCAGATTCTCAGTAAAGATTATTATTATCACTGTCAGAGTCAACAACAGTCACTAGAATGTTCGGACCGTCTACGTGTG
Unaligned ( gi|19 ): ATCAGATTCAACAACAGCCACTAGAATGGTAATGTGTTCAAAACTCAATGCAGTTACGGTGTTTCAGCAGACAGTGACGCT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 3333333333333333333 11111 111111 11111 11 11 1111 1111111 22222 44444444444444444 1111 0000000000000000000000000000000000000000000000000000000000000000 333333333 55555555555555555555555555555555555555555 11 11 22222 11 11111111 2222 11 111 1111 11 111 11 111
lowQualScore : 4 55 3 0 8 44 8888 4 4 5555555555555555555 4 777 4 55 4 0 55 44 4 3 1 3 99999 55 55 55 3 66 4 4 777 4 4 00000 55 555555 4 00000 4 66666 4 888 4 11 4 4 4 44 3 3 77 11 4 4 4 4 7777 7 4 4 6666666 88 1 5 5 88888 2 00000000000000000 2222 6666666666666666666666666666666666666666666666666666666666666666 2 5 8 222222222 8 0 66 88888888888888888888888888888888888888888 5 2 5 5 5 2 00 11 888 1 5 00000 55 77 77 22222222 77 1 3 5 3 0 1 8 0 11 3 8 8 0 8 6 1 0 8 5555 8 11 1 444 0 8888 1 0 0 11 8 444 11 8 444 9999 8 8
lowQualScore : . .. . . . .. .... . . ................... . ... . .. . . .. .. . . . . ..... .. .. .. . .. . . ... . . ..... .. ...... . ..... . ..... . ... . .. . . . .. . . .. .. . . . . .... . . . ....... .. . . . ..... . ................. .... ................................................................ . . . ......... . . .. ......................................... . . . . . . .. .. ... . . ..... .. .. .. ........ .. . . . . . . . . .. . . . . . . . . . .... . .. . ... . .... . . . .. . ... .. . ... .... . .
lowQualScore : 0 55 0 8 0 77 5555 0 0 0000000000000000000 0 000 0 55 0 5 55 99 0 6 0 6 11111 00 00 00 6 00 0 0 000 0 0 00000 55 555555 0 00000 0 00000 0 555 0 00 0 0 0 77 6 6 44 00 0 0 0 0 2222 3 4 4 8888888 22 4 7 7 66666 2 00000000000000000 1111 6666666666666666666666666666666666666666666666666666666666666666 5 6 0 000000000 0 8 44 77777777777777777777777777777777777777777 7 9 7 7 0 4 77 00 999 6 7 00000 77 99 99 66666666 99 4 0 7 0 8 4 0 8 66 2 0 0 8 0 0 4 8 0 0000 0 00 4 000 8 8888 4 8 8 00 0 000 00 0 000 6666 0 0
consensus : CACTCCACAGTGACATCAAGGAGA-TGGT--ATATTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCATTTTT-A-ATAGCA-ATGAATCANAATAATA-CATATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGTTACATGT--AC------CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-TAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTCT---T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTGTATGTAACCGTTTA-----------------TCTATC----TATCTAT-TCG-TCT-ATCT-------TCTATCT-AT-C----C-----GTCTATCCAT-C-AT-------CCATCCATAATGTTATAACAGTATGCAGTG-AT---------CGTT-AACTTCATCGTACATTTGCCCTGCA-------------CTTT-ACAC------------------CATTGT-TTACTTC-GCCAA-TTTATATCCAT-ATTCATACAAT-GCCAT-GACGTATATGTGCACGG--NAATTAGTA-AAACG-----AAGAC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAAGTCAAATATCAGTCA-GACACCAAATTTATAACGACATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTACAA---AATAGCAG-NNATACAGTGAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTTAATTCCATCATCG-TCAGAGTCAAAGA-TTCTCAGT
Reference ( family-7351 ) : CACTCCACAGTGACATCAAGGAGA-TGGT--ATATTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCATTTTT-A-ATAGCA-ATGAATCANAATAATA-CATATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGTTACATGT--AC------CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-TAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTCT---T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTGTATGTAACCGTTTA-----------------TCTATC----TATCTAT-TCG-TCT-ATCT-------TCTATCT-AT-C---TT-----GTCTATCCAT-C-AT-------CCATCCATAATGTTATAACAGTATGCAGTG-AT---------CGTT-AACTTCATCGTACATTTGCCCTGCA-------------CTTT-ACAC------------------CATTGT-TTACTTC-GCCAA-TTTATATCCAT-ATTCATACAAT-GCCAT-GACGTATATGTGCACGG--NAATTAGTA-AAACG-----AAGAC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAAGTCAAATATCAGTCA-GACACCAAATTTATAACGACATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTACAA---AATAGCAG-NNATACAGTGAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTTAATTCCATCATCG-TCAGAGTCAAAGA-TTCTCAGT
gi|1 : AGGAGG-TA-T--ACATTATTTCCTTT-CAA--GTAATC----TTGATATG-T-AAAAGCCTTCATGGCG------------------AGAAA-A---CCA-TACA--ATG-TCATAACTGTTGG--TGAGCATTTTTCACATAGCA--TGAATCACAATAATA-CATATCACCCCT-----ACTC--AC--CC-----TATT-GTAATACTTTGAATT-TGC-CAAC---AATGAAGGAGGC-----TGATGCAGTTACATGT--AC------CGTTAGAGCT-----A-AAA--C--AA-GTTG---A-TTGTCACATT-GTG-C-AT--CGGGTGA-TC-AATA--TTTC--TAATGCTTGTG--CATAA---TA-GCGTGGATTAAT-CCTTATAGAGCA-TG-CATGATGAAATC-AAGATTCT---T--AAA-CACTTGTCACACTGTTCCCAAATGCGGCG-ATGAAATC-ATGTATCCACACCTTACTATAATGCACTGTATGTAACCGTTTA-----------------CCTATC----TATCTATATCGATCTAATCTAGTATTATATATCTGATGC---TTAGTTAGTCTATCTAT-CTATTTTCATACCATCCATGA-GTTACAATAGTA-GCAGTGTAT---------CGTTGAACTTC--CGTAACTTTG-CCTG-A-------------CTTTAACATG-----------------CATTGTGTTACTTTGGCCAAGTTTAAATCCATGATCCATGCAA--GCCATGGGTGGATATGTGCACGA--CAATTAATA-AA--G-----AAGCCCGAAT--G-TGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAACTC-AATATTAGTCAGGACACCAAATTT-TAACGACATTATCTCTTTACATG-ATA-CTCAA-ATG---TTGTAGTGG-AGGCTTA-ATC----TAAT-TGGACTAT--AAGATTAA---AATAGCAGCGGATACAGTAAACAAT-AAAGTTAATTTCTA--AAT-GT---AAATCT-CAGA---GGAACTAATTTCCAAGTCAATT---TCATCG-TCAGAGTCAAAGA-TTCTCAGT
gi|10 : attcacccagatggcaagaagCACTCCACAGTGACATCAAGGAGA-TGTC--ATATTTTT-CCATT-CAAA-GTAATC----TTGATGTGCC-AGAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCAATTTT-G-ATAGCA-ATGAATCAGAATAATA-CATATGACCCCC-----ACCC--AC--CCA--A-TAGT-GTAATACTTTGAAAT-TAC-CAAC---AAC-AATGAG-C-----TGATGCAGTTACACGT--AC------CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TCACCA--TT-GTG-C-ATA-TAGGTAA-TC-Aatccagattattattatctactatcagattcaacaacagccagctgagatgttctgaccgtctacatatcacaaactcaatgcagttcaggtggttagcagacgtgacacttaaaaaaaattatctgctgcaa
gi|11 : attA-----------------TCTATCTATTTATCTAT-CTG-CCT-GTCTC------TCTATCT-AT-C----T-----GTCTATCCATCC-AT-------CCATCCATAATGTTATAATA-----------------------GTT-AACCAAATCGTACATTTGCCCTGCA-------------CTTT-ACACTTTACGTTTACAGTAACACATTGT-TTGCTTC-GCCAA-TTTATATCCAT-ATTCATACAAT-GCCAT-TACGCATATGTGCACGG--AAAGTAGTA-AAACG-----AAGAC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAAGTCAAAT
gi|12 : -ATGAATCAAAACAAT-------CACTCTC-----ACGC--TCTTCCC--ACTAA--GTAAT----TG--TT-TGC-CAAC---AAT-AGT-AG-C-----AGAT-C--TGAAATGTTAAC--------TTA-AGAT-----ATAAA--CCTAATAGTAT--AATTCTGA--TTCATG-CGATAATGGGTAAATCGAGTA--TTAC--TAATGCTTGTGACCATGAATATATTCTTGAATAATTCCCTTA-Acc
gi|13 : CACTCCACTATGACATCAAGGAGAATGGT--ATATATTTTCCTTTTCAAA-GTAATC----TTAATATGCTAAAAAGCCT-CTTCGC-------------------AGCAATATTTTCAGTACA--ATTCTCATAACTTTTGA--TG--------------AGCA-ATGAATCAGAA-AATATCATG-CACCCCC-----ACCC--A---CCC--A-TA----TAATACTTcc
gi|14 : cttA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-TAGTGTATAATT-CCTTA-ACACCA----C-TGG-AAAATCTGA-ATTCT---T--AA--CACTTGTC--------ACCAA-TGCAGCGTATGAAATA-A-----CCACACATCACTATAATAGAGTGTATGTAACTGgattt
gi|15 : ------------------CATTGT-T-ACTTC-GCCAG-TTTATATCT----TTCATTCAA----CAT--ACGTATACATGTAC-G--CA--TGATATAAATC-----AGGAT--AATGCGACGA--AAATAGACAA--TTTCAG-GGGATTTAAATGTAGAATCAc
gi|18 : taataCTCCGCAGTGACATCAAGGAGA-TGGT--ATA-----------------GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---ACA-CACA--AAT-TTATAACta
gi|2 : cttctCACTCAACAGTGACATCAAGGAGA-TGGT--ATATTTTT-CCTTT-CAAA-GTAATC----TTGATATACT-AAAAGCCT-CATCGCAGAAAACTTATACAACCGCAGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCATTTT--A-ATAGCA-ATGAATTAGAATAATA-CATATCACCC-------ACCC--AC--CCC--A-TATA-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGTTACATGT--AC------TCTCA-AGTT-----A-AAAAGA--AA-AGCGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-ATTAA-TTGCTATAATGCTTGTGA-CATGAAAATA-TTGTGGATAATT-CCTTA-AAACCA----C-TGGTAAATCT-AA-ATTCT---TTCAAA-CACTTGTCACACTGTCACCAA-TGCAGCGTATGAAATA-A-----CCACATATCACTATATTACAG---AT-TAACTGTTTA-----------------TCTATA----TATCTAT-TCA-TTC-AT----------------------------------------T-C-AT-------CCATCCATAATGCTATAGCATTATGCAGTG-AT---------CGTT-A--TCCA-CATGCATTTGCCCTGCA-------------CTTT-AC----------------------------------------------ATCCAT-ATTCATACAAT-GTCAT-AACGTATATGTGCACGG--AAAATAGTA-AGACAAATTTAAGAC--AAT--GATGA--AAAT----AT--TTT--GTGTGACTT-GATGCAAAGTCAAATATCAGTCA-GACACCAAACTTATGACAACGTTATCTCTTTACGTA-ATA-C--------ACCATGTAGTGAAAGGCTTA-ATTAATGTAAT-TGGAATAT--AAGTACAATTTAATAGCAA-ATATACAATGAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---AGAACTAATTTCCAAGTTAATTCCATCATCG-TCAGAGTTAAAGA-TCCTCAGTggcttaacaag
gi|20 : A-----------------TCGATC----TATTGAT-TCA-TCT-ATCTA------TCTATCT-AT-CCATCC-----GCCCATCCATCC-ATC------CCATCCATAgaagattatcattatcactatcagtaccaacgacagacactagaatgttctgaccgtctacatggtatgcacaaaactcgatgcagttaaggtggttcagcaaacagtgacacttaaaaaaattataagcttccacagt
gi|21 : -ACAC-------------------ATTGT-TTACTTC-GCCAA-TTTATGCCGGT-ATTCA
gi|3 : ATCAAGAAGA-TGGT--AT---TTTTTCTTT-CAAA-GTAATC----TTGATATGTT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TAATAACTTTTGA--TTAGCATTTTT-A-ATAGCA-ATGAATCACAATAATA-CATATCACCCCC-----AACC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGTTACATGT--AC------CGTTA-AGCT-----A-AAA--C--AA-AGTGT--A-ATGTAA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-CAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTC----T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTATATGTAACTGTTTA-----------------TCTATC----TATCTA---------------------TCTATCT-AT-C---------------------C-AT-------CCATCCATAATGTTATAACAGTATGCAGTG-ATCGTTATTACCGTT-AACTTCATCGTACATTTGCCCTGCANNNNNNNNNNNNNNNNN-NNNN------------------NNNNNN-NNNNNNN-NNNNN-NNNNNNNCCAT-ATTCATACAAT-GCCAT-AACGTATATGTGCACGG--AAATTAGTA-AAACA-----AAGAC--AAT--GATGA--A-------------T--ATG-GA--T-GATGCACAGTCAAATATCAGCCA-GACACCAAATTTATAACGGCATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGAAAAGCTTA-ATC----TTAT-TGGACTAT--AAGTACAA---AATAGCAG-TTATACAGTGAACAATAAAAGTTAGTTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTTAATTCCATCATCG-TCAAAGTCAAAGA-TTCTCAGT
gi|4 : CACTCCACAGTGATATCAAGAGGA-TGGT--ATATTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TCATAACTGTTGG--TGAGCATTTTT-A-ATAGCA-ATGAATCACAATAATA-CATATCACCCCC-----ACTC--AC--CCT--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGTTACATGT--AC------CGTTA-AGCT-----A-AAA--C--AA-AGTGT--A-TTGTCA--TT-GTG-C-ATG-CGGGTGA-TC-AATAT-TTCC--TAATGCTTGTGA-CATAAAAATA-CAGTGGATAATA-CCTTA-AAACCAATG-CATGATGAAATC-AA-ATTC----T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATACATGTATCCACACATTACTATAATACACTGTATGTAACCGTTTACNNNNNNNNNNNNNNNNNNNNNN----NNNNNNN-NNN-NNN-NNNN-------NNNNNNN-NN-N---NN-----NNNNNNNNNT-C-AT-------CCATCCATAATGTTACAATAGTATGCAGTG-AT---------CGTT-AACTTCATCGTACATTTGCCCTGCA-------------CTTT-ACAT------------------CATTGT-TTACTTT-GCCAA-TTAATATCCAT-ATCCATGCAAT-GCCAT-GGCGTATATGTGCACGA--CAATTAATA-AAACG-----AAGGC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAACTCAAATATTAGTCA-GACACCAAATTTATAACGACATTATCTCTTTACATG-ATA-CTCAA-ATGTCCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTTCAA---AATAGCAG-CGATACAGTAAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTCAAT----TCATCG-TCAGAGTCAAAGA-TTCTCAGTaaagattatcattatcactagtctatcagattcaacaacaaccattattacattcaacaacagccactagaatgttctgacc
gi|5 : CACTCCACAGTGACATCAAGGAGA-TGGT--ATATTTTT-----------------C----TTGGTATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--TCT-TTATAACTGTTGG--TGAACATTTTT-A-ATAGCA-ATGAATCACAATAATA-CACATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATAATTTGAATT-TGC-CAAC---AAC-AATGAA-C-----TGATGTAGTTACATGT--ACATGTACCGTTA-AGCT-----A-AAT--C--AA-AGTGT--A-TTGTCA--TT-GTG-T-ATG-TGGGTAA-TC-AGTAA-TTGC--CAATGCTTGTGA-CATAAAAATA-CAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTAT---T--AA--CACTTGTCACATTGCCATCAA-TGTGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTGTATGTAACAGTTTA-----------------ACGATC----TATCTAT-TTN-NNN-NNNN-------NNNNNNN-NN-N---NN-----NNNNNNNNNN-G---------------CATAATGGTATAACAGT
gi|6 : CAT-ATTCA---AATAGTTAT-GA------TGTGCACGGAATAATTAGTA-TAATGC----AAGACTAAAG--GATGAATAAAT----AAACCTT--GTGT---CT-GTTTC----TTAAAT-------------CTA---TTA-AAC---ATTATCTTTCCA-ATGCATATCTCAATATGAACTTGTAGT-GAAAACTTACATCT---TAATATGGCTTATACAAGTACAA---G--AGCA---------------AATAAA--TTAGCTTTTGATAATAGTATAAAA--TCCAGATTTAGAACTTATTT-CAATTTAAATTCAGCATCGTTCAGACTCCAATATTTTTCAGT
gi|7 : TCCACAGTGAC-TCAAGAGGA-TGGCTAATATTTTGTCTTTTTCAGACGTAATCAGACTTGATATGTT-AAA-GCCT--ATCGC-------------------AGACA-A---CCA-ATCATTAAT---ATCACTTTTGAATTTAGCATTTTT-A-A-AATACATGGATCATCATA-TA-CATAT-ACCTCTGATCTACCCTAAC--CCCCAA-TATTCGTAATACTTTGAATTATGCACGACCTGAAC-AATGAG-CGATATTGAT-CAGTTA-ATGT--ACG-----TGTTT-AGCTTCTAAA-GAA--C--AA-AGTGTGTA-TGGTCGAGTT-GTGGC-ATC-TGGGTAA-TC-GGTAAATTGT--TAATTCGTGAGA-CATGCAAATC-TAGTGGATAATT-CATT--ACACAAATGTCATGGTAAATTC-AA-ATTTTCTCT--AAAGCACTTtaacagtttatcattgtcgattccacaacaccacttagattactgttctgacctatactaagtgtatgctcaaaactagatgcagtaaagtggttcagcagagacacttaaaaaaattatcggctgtcac
gi|8 : agCACTCAACAGTGACATCAAGGAGA-TGGT--GTATTTTT-CCGTT-CAAA-GTAGTC----TTGACATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TGCA--AAT-TTATTACTGTTGA--CGAGCATTTTA-A-ATAGCA-ATGAATCAGAATGATA-CATATTACCCCC-----ACCA--AC--CCC--A-AATA-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGTTACCTGT--AC------CTTTA-AGCT-----A-A-------AA-AGCTC--A-TTCTCA--TT-ATG-C-ATG-TGGGTAA-TC-AGTAA-TTACTATAATGCTTGTGG-CATAATAATA-TAATCGACAATT-CCTTA-TAGCCA----C-TGGTAAATTT-AA-ATTttg
gi|9 : --TGAGCATATGT-A-ATAGCA-ATGAATCACAATAATA-CATATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---ATT-AATGAG-C-----TGATGCAGTTACATGT--AC------CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAACA-TAGTGGATAATT-CTTTA-AAACCACTG-CATGGTAAAATC-AA-ATACT---TTAAAA-TACTTGTCCCACTGTCACCAA-TGTGGCGTATGAAATA-A-----TCACACATCACTA-AAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATCACCATCAGATTCAACATCAGCCACTCTAATGTTCTGACCGTCTACATGGTATGCACAAAACTCAATGCAGGTAAGGTGGTTCAGGAGACAGTGACACTTAAGAAAATAG
Unaligned ( gi|17 ): TAATTTAGTCATTCCCATCATTGGCAGATTCTCAGTAAAGATTATTATTATCACTGTCAGAGTCAACAACAGTCACTAGAATGTTCGGACCGTCTACGTGTG
Unaligned ( gi|19 ): ATCAGATTCAACAACAGCCACTAGAATGGTAATGTGTTCAAAACTCAATGCAGTTACGGTGTTTCAGCAGACAGTGACGCT
Alignments
lowQualScore : 1 3333333333333333333 11111 111111 11111 11 11 1111 1111111 22222 33333333333333 1111 9999999999999999999999999999999999999999999999999999999999999 1111 333333333 55555555555555555555555555555555555555555 11 11 22222 11 11111111 2222 11 111 1111 11 111 11 111
lowQualScore : 4 55 3 0 8 44 8888 4 4 5555555555555555555 4 777 4 55 4 0 55 44 4 3 1 3 99999 55 55 55 3 66 4 4 777 4 4 00000 55 555555 4 00000 4 66666 4 888 4 11 4 4 4 44 3 3 77 11 4 4 4 4 7777 7 4 4 6666666 88 1 5 5 88888 2 33333333333333 2222 7777777777777777777777777777777777777777777777777777777777777 2222 2 5 8 222222222 8 0 66 88888888888888888888888888888888888888888 5 2 5 5 5 2 00 11 888 1 5 00000 55 77 77 22222222 77 1 3 5 3 0 1 8 0 11 3 8 8 0 8 6 1 0 8 5555 8 11 1 444 0 8888 1 0 0 11 8 444 11 8 444 9999 8 8
lowQualScore : . .. . . . .. .... . . ................... . ... . .. . . .. .. . . . . ..... .. .. .. . .. . . ... . . ..... .. ...... . ..... . ..... . ... . .. . . . .. . . .. .. . . . . .... . . . ....... .. . . . ..... . .............. .... ............................................................. .... . . . ......... . . .. ......................................... . . . . . . .. .. ... . . ..... .. .. .. ........ .. . . . . . . . . .. . . . . . . . . . .... . .. . ... . .... . . . .. . ... .. . ... .... . .
lowQualScore : 0 55 0 8 0 77 5555 0 0 0000000000000000000 0 000 0 55 0 5 55 99 0 6 0 6 11111 00 00 00 6 00 0 0 000 0 0 00000 55 555555 0 00000 0 00000 0 555 0 00 0 0 0 77 6 6 44 00 0 0 0 0 2222 3 4 4 8888888 22 4 7 7 66666 2 66666666666666 1111 0000000000000000000000000000000000000000000000000000000000000 1111 5 6 0 000000000 0 8 44 77777777777777777777777777777777777777777 7 9 7 7 0 4 77 00 999 6 7 00000 77 99 99 66666666 99 4 0 7 0 8 4 0 8 66 2 0 0 8 0 0 4 8 0 0000 0 00 4 000 8 8888 4 8 8 00 0 000 00 0 000 6666 0 0
consensus : CACTCCACAGTGACATCAAGGAGA-TGGT--ATATTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCATTTTT-A-ATAGCA-ATGAATCANAATAATA-CATATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGTTACATGT--AC------CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-TAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTCT---T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTGTATGTAACCGTTTA--------------TCTATC----TATCTAT-TCG-TCT-ATCT-------TCTATCT-ATCC-------GTCTATCCAT-C-AT-------CCATC----CATAATGTTATAACAGTATGCAGTG-AT---------CGTT-AACTTCATCGTACATTTGCCCTGCA-------------CTTT-ACAC------------------CATTGT-TTACTTC-GCCAA-TTTATATCCAT-ATTCATACAAT-GCCAT-GACGTATATGTGCACGG--NAATTAGTA-AAACG-----AAGAC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAAGTCAAATATCAGTCA-GACACCAAATTTATAACGACATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTACAA---AATAGCAG-NNATACAGTGAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTTAATTCCATCATCG-TCAGAGTCAAAGA-TTCTCAGT
Reference ( family-7351 ) : CACTCCACAGTGACATCAAGGAGA-TGGT--ATATTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCATTTTT-A-ATAGCA-ATGAATCANAATAATA-CATATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGTTACATGT--AC------CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-TAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTCT---T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTGTATGTAACCGTTTA--------------TCTATC----TATCTAT-TCG-TCT-ATCT-------TCTATCT-ATCC-------GTCTATCCAT-C-AT-------CCATC----CATAATGTTATAACAGTATGCAGTG-AT---------CGTT-AACTTCATCGTACATTTGCCCTGCA-------------CTTT-ACAC------------------CATTGT-TTACTTC-GCCAA-TTTATATCCAT-ATTCATACAAT-GCCAT-GACGTATATGTGCACGG--NAATTAGTA-AAACG-----AAGAC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAAGTCAAATATCAGTCA-GACACCAAATTTATAACGACATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTACAA---AATAGCAG-NNATACAGTGAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTTAATTCCATCATCG-TCAGAGTCAAAGA-TTCTCAGT
gi|1 : AGGAGG-TA-T--ACATTATTTCCTTT-CAA--GTAATC----TTGATATG-T-AAAAGCCTTCATGGCG------------------AGAAA-A---CCA-TACA--ATG-TCATAACTGTTGG--TGAGCATTTTTCACATAGCA--TGAATCACAATAATA-CATATCACCCCT-----ACTC--AC--CC-----TATT-GTAATACTTTGAATT-TGC-CAAC---AATGAAGGAGGC-----TGATGCAGTTACATGT--AC------CGTTAGAGCT-----A-AAA--C--AA-GTTG---A-TTGTCACATT-GTG-C-AT--CGGGTGA-TC-AATA--TTTC--TAATGCTTGTG--CATAA---TA-GCGTGGATTAAT-CCTTATAGAGCA-TG-CATGATGAAATC-AAGATTCT---T--AAA-CACTTGTCACACTGTTCCCAAATGCGGCG-ATGAAATC-ATGTATCCACACCTTACTATAATGCACTGTATGTAACCGTTTA--------------CCTATC----TATCTATATCGATCTAATCTAGTATTATATATCTGATGCTTAGTTAGTCTATCTAT-CTATTTTCATACCATC----CATGA-GTTACAATAGTA-GCAGTGTAT---------CGTTGAACTTC--CGTAACTTTG-CCTG-A-------------CTTTAACATG-----------------CATTGTGTTACTTTGGCCAAGTTTAAATCCATGATCCATGCAA--GCCATGGGTGGATATGTGCACGA--CAATTAATA-AA--G-----AAGCCCGAAT--G-TGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAACTC-AATATTAGTCAGGACACCAAATTT-TAACGACATTATCTCTTTACATG-ATA-CTCAA-ATG---TTGTAGTGG-AGGCTTA-ATC----TAAT-TGGACTAT--AAGATTAA---AATAGCAGCGGATACAGTAAACAAT-AAAGTTAATTTCTA--AAT-GT---AAATCT-CAGA---GGAACTAATTTCCAAGTCAATT---TCATCG-TCAGAGTCAAAGA-TTCTCAGT
gi|10 : attcacccagatggcaagaagCACTCCACAGTGACATCAAGGAGA-TGTC--ATATTTTT-CCATT-CAAA-GTAATC----TTGATGTGCC-AGAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCAATTTT-G-ATAGCA-ATGAATCAGAATAATA-CATATGACCCCC-----ACCC--AC--CCA--A-TAGT-GTAATACTTTGAAAT-TAC-CAAC---AAC-AATGAG-C-----TGATGCAGTTACACGT--AC------CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TCACCA--TT-GTG-C-ATA-TAGGTAA-TC-Aatccagattattattatctactatcagattcaacaacagccagctgagatgttctgaccgtctacatatcacaaactcaatgcagttcaggtggttagcagacgtgacacttaaaaaaaattatctgctgcaa
gi|11 : attA--------------TCTATCTATTTATCTAT-CTG-CCT-GTCTC------TCTATCT-ATCT-------GTCTATCCATCC-AT-------CCATC----CATAATGTTATAATA-----------------------GTT-AACCAAATCGTACATTTGCCCTGCA-------------CTTT-ACACTTTACGTTTACAGTAACACATTGT-TTGCTTC-GCCAA-TTTATATCCAT-ATTCATACAAT-GCCAT-TACGCATATGTGCACGG--AAAGTAGTA-AAACG-----AAGAC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAAGTCAAAT
gi|12 : -ATGAATCAAAACAAT-------CACTCTC-----ACGC--TCTTCCC--ACTAA--GTAAT----TG--TT-TGC-CAAC---AAT-AGT-AG-C-----AGAT-C--TGAAATGTTAAC--------TTA-AGAT-----ATAAA--CCTAATAGTAT--AATTCTGA--TTCATG-CGATAATGGGTAAATCGAGTA--TTAC--TAATGCTTGTGACCATGAATATATTCTTGAATAATTCCCTTA-Acc
gi|13 : CACTCCACTATGACATCAAGGAGAATGGT--ATATATTTTCCTTTTCAAA-GTAATC----TTAATATGCTAAAAAGCCT-CTTCGC-------------------AGCAATATTTTCAGTACA--ATTCTCATAACTTTTGA--TG--------------AGCA-ATGAATCAGAA-AATATCATG-CACCCCC-----ACCC--A---CCC--A-TA----TAATACTTcc
gi|14 : cttA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-TAGTGTATAATT-CCTTA-ACACCA----C-TGG-AAAATCTGA-ATTCT---T--AA--CACTTGTC--------ACCAA-TGCAGCGTATGAAATA-A-----CCACACATCACTATAATAGAGTGTATGTAACTGgattt
gi|15 : ------------------CATTGT-T-ACTTC-GCCAG-TTTATATCT----TTCATTCAA----CAT--ACGTATACATGTAC-G--CA--TGATATAAATC-----AGGAT--AATGCGACGA--AAATAGACAA--TTTCAG-GGGATTTAAATGTAGAATCAc
gi|18 : taataCTCCGCAGTGACATCAAGGAGA-TGGT--ATA-----------------GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---ACA-CACA--AAT-TTATAACta
gi|2 : cttctCACTCAACAGTGACATCAAGGAGA-TGGT--ATATTTTT-CCTTT-CAAA-GTAATC----TTGATATACT-AAAAGCCT-CATCGCAGAAAACTTATACAACCGCAGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCATTTT--A-ATAGCA-ATGAATTAGAATAATA-CATATCACCC-------ACCC--AC--CCC--A-TATA-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGTTACATGT--AC------TCTCA-AGTT-----A-AAAAGA--AA-AGCGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-ATTAA-TTGCTATAATGCTTGTGA-CATGAAAATA-TTGTGGATAATT-CCTTA-AAACCA----C-TGGTAAATCT-AA-ATTCT---TTCAAA-CACTTGTCACACTGTCACCAA-TGCAGCGTATGAAATA-A-----CCACATATCACTATATTACAG---AT-TAACTGTTTA--------------TCTATA----TATCTAT-TCA-TTC-AT-------------------------------------T-C-AT-------CCATC----CATAATGCTATAGCATTATGCAGTG-AT---------CGTT-A--TCCA-CATGCATTTGCCCTGCA-------------CTTT-AC----------------------------------------------ATCCAT-ATTCATACAAT-GTCAT-AACGTATATGTGCACGG--AAAATAGTA-AGACAAATTTAAGAC--AAT--GATGA--AAAT----AT--TTT--GTGTGACTT-GATGCAAAGTCAAATATCAGTCA-GACACCAAACTTATGACAACGTTATCTCTTTACGTA-ATA-C--------ACCATGTAGTGAAAGGCTTA-ATTAATGTAAT-TGGAATAT--AAGTACAATTTAATAGCAA-ATATACAATGAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---AGAACTAATTTCCAAGTTAATTCCATCATCG-TCAGAGTTAAAGA-TCCTCAGTggcttaacaag
gi|20 : A--------------TCGATC----TATTGAT-TCA-TCT-ATCTA------TCTATCT-ATCC-------ATCCGCCCATCC-AT-------CCATC----Cgaagattatcattatcactatcagtaccaacgacagacactagaatgttctgaccgtctacatggtatgcacaaaactcgatgcagttaaggtggttcagcaaacagtgacacttaaaaaaattataagcttccacagt
gi|21 : -ACAC-------------------ATTGT-TTACTTC-GCCAA-TTTATGCCGGT-ATTCAcatccata
gi|3 : ATCAAGAAGA-TGGT--AT---TTTTTCTTT-CAAA-GTAATC----TTGATATGTT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TAATAACTTTTGA--TTAGCATTTTT-A-ATAGCA-ATGAATCACAATAATA-CATATCACCCCC-----AACC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGTTACATGT--AC------CGTTA-AGCT-----A-AAA--C--AA-AGTGT--A-ATGTAA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-CAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTC----T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTATATGTAACTGTTTA--------------TCTATC----TATCTA---------------------TCTATCT-ATC-------------------C-AT-------CCATC----CATAATGTTATAACAGTATGCAGTG-ATCGTTATTACCGTT-AACTTCATCGTACATTTGCCCTGCANNNNNNNNNNNNNNNNN-NNNN------------------NNNNNN-NNNNNNN-NNNNN-NNNNNNNCCAT-ATTCATACAAT-GCCAT-AACGTATATGTGCACGG--AAATTAGTA-AAACA-----AAGAC--AAT--GATGA--A-------------T--ATG-GA--T-GATGCACAGTCAAATATCAGCCA-GACACCAAATTTATAACGGCATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGAAAAGCTTA-ATC----TTAT-TGGACTAT--AAGTACAA---AATAGCAG-TTATACAGTGAACAATAAAAGTTAGTTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTTAATTCCATCATCG-TCAAAGTCAAAGA-TTCTCAGT
gi|4 : CACTCCACAGTGATATCAAGAGGA-TGGT--ATATTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TCATAACTGTTGG--TGAGCATTTTT-A-ATAGCA-ATGAATCACAATAATA-CATATCACCCCC-----ACTC--AC--CCT--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGTTACATGT--AC------CGTTA-AGCT-----A-AAA--C--AA-AGTGT--A-TTGTCA--TT-GTG-C-ATG-CGGGTGA-TC-AATAT-TTCC--TAATGCTTGTGA-CATAAAAATA-CAGTGGATAATA-CCTTA-AAACCAATG-CATGATGAAATC-AA-ATTC----T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATACATGTATCCACACATTACTATAATACACTGTATGTAACCGTTTACNNNNNNNNNNNNNNNNNNN----NNNNNNN-NNN-NNN-NNNN-------NNNNNNN-NNNN-------NNNNNNNNNN-N-NN-------TCATCCATCCATAATGTTACAATAGTATGCAGTG-AT---------CGTT-AACTTCATCGTACATTTGCCCTGCA-------------CTTT-ACAT------------------CATTGT-TTACTTT-GCCAA-TTAATATCCAT-ATCCATGCAAT-GCCAT-GGCGTATATGTGCACGA--CAATTAATA-AAACG-----AAGGC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAACTCAAATATTAGTCA-GACACCAAATTTATAACGACATTATCTCTTTACATG-ATA-CTCAA-ATGTCCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTTCAA---AATAGCAG-CGATACAGTAAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTCAAT----TCATCG-TCAGAGTCAAAGA-TTCTCAGTaaagattatcattatcactagtctatcagattcaacaacaaccattattacattcaacaacagccactagaatgttctgacc
gi|5 : CACTCCACAGTGACATCAAGGAGA-TGGT--ATATTTTT-----------------C----TTGGTATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--TCT-TTATAACTGTTGG--TGAACATTTTT-A-ATAGCA-ATGAATCACAATAATA-CACATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATAATTTGAATT-TGC-CAAC---AAC-AATGAA-C-----TGATGTAGTTACATGT--ACATGTACCGTTA-AGCT-----A-AAT--C--AA-AGTGT--A-TTGTCA--TT-GTG-T-ATG-TGGGTAA-TC-AGTAA-TTGC--CAATGCTTGTGA-CATAAAAATA-CAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTAT---T--AA--CACTTGTCACATTGCCATCAA-TGTGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTGTATGTAACAGTTTA--------------ACGATC----TATCTAT-T--------TNN-------NNNNNNN-NNNN-------NNNNNNNNNN-N-NN-------NNNNG----CATAATGGTATAACAGT
gi|6 : CAT-ATTCA---AATAGTTAT-GA------TGTGCACGGAATAATTAGTA-TAATGC----AAGACTAAAG--GATGAATAAAT----AAACCTT--GTGT---CT-GTTTC----TTAAAT-------------CTA---TTA-AAC---ATTATCTTTCCA-ATGCATATCTCAATATGAACTTGTAGT-GAAAACTTACATCT---TAATATGGCTTATACAAGTACAA---G--AGCA---------------AATAAA--TTAGCTTTTGATAATAGTATAAAA--TCCAGATTTAGAACTTATTT-CAATTTAAATTCAGCATCGTTCAGACTCCAATATTTTTCAGT
gi|7 : TCCACAGTGAC-TCAAGAGGA-TGGCTAATATTTTGTCTTTTTCAGACGTAATCAGACTTGATATGTT-AAA-GCCT--ATCGC-------------------AGACA-A---CCA-ATCATTAAT---ATCACTTTTGAATTTAGCATTTTT-A-A-AATACATGGATCATCATA-TA-CATAT-ACCTCTGATCTACCCTAAC--CCCCAA-TATTCGTAATACTTTGAATTATGCACGACCTGAAC-AATGAG-CGATATTGAT-CAGTTA-ATGT--ACG-----TGTTT-AGCTTCTAAA-GAA--C--AA-AGTGTGTA-TGGTCGAGTT-GTGGC-ATC-TGGGTAA-TC-GGTAAATTGT--TAATTCGTGAGA-CATGCAAATC-TAGTGGATAATT-CATT--ACACAAATGTCATGGTAAATTC-AA-ATTTTCTCT--AAAGCACTTtaacagtttatcattgtcgattccacaacaccacttagattactgttctgacctatactaagtgtatgctcaaaactagatgcagtaaagtggttcagcagagacacttaaaaaaattatcggctgtcac
gi|8 : agCACTCAACAGTGACATCAAGGAGA-TGGT--GTATTTTT-CCGTT-CAAA-GTAGTC----TTGACATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TGCA--AAT-TTATTACTGTTGA--CGAGCATTTTA-A-ATAGCA-ATGAATCAGAATGATA-CATATTACCCCC-----ACCA--AC--CCC--A-AATA-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGTTACCTGT--AC------CTTTA-AGCT-----A-A-------AA-AGCTC--A-TTCTCA--TT-ATG-C-ATG-TGGGTAA-TC-AGTAA-TTACTATAATGCTTGTGG-CATAATAATA-TAATCGACAATT-CCTTA-TAGCCA----C-TGGTAAATTT-AA-ATTttg
gi|9 : --TGAGCATATGT-A-ATAGCA-ATGAATCACAATAATA-CATATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---ATT-AATGAG-C-----TGATGCAGTTACATGT--AC------CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAACA-TAGTGGATAATT-CTTTA-AAACCACTG-CATGGTAAAATC-AA-ATACT---TTAAAA-TACTTGTCCCACTGTCACCAA-TGTGGCGTATGAAATA-A-----TCACACATCACTA-AAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATCACCATCAGATTCAACATCAGCCACTCTAATGTTCTGACCGTCTACATGGTATGCACAAAACTCAATGCAGGTAAGGTGGTTCAGGAGACAGTGACACTTAAGAAAATAG
Unaligned ( gi|17 ): TAATTTAGTCATTCCCATCATTGGCAGATTCTCAGTAAAGATTATTATTATCACTGTCAGAGTCAACAACAGTCACTAGAATGTTCGGACCGTCTACGTGTG
Unaligned ( gi|19 ): ATCAGATTCAACAACAGCCACTAGAATGGTAATGTGTTCAAAACTCAATGCAGTTACGGTGTTTCAGCAGACAGTGACGCT
Alignments
lowQualScore : 1 3333333333333333333 11111 111111 11111 11 11 1111 1111111 22222 33333333333333 1111 9999999999999999999999999999999999999999999999999999999999999 1111 333333333 55555555555555555555555555555555555555555 11 11 22222 11 11111111 2222 11 111 1111 11 111 11 111
lowQualScore : 4 55 3 0 8 44 8888 4 4 5555555555555555555 4 777 4 55 4 0 55 44 4 3 1 3 99999 55 55 55 3 66 4 4 777 4 4 00000 55 555555 4 00000 4 66666 4 888 4 11 4 4 4 44 3 3 77 11 4 4 4 4 7777 7 4 4 6666666 88 1 5 5 88888 2 33333333333333 2222 7777777777777777777777777777777777777777777777777777777777777 2222 2 5 8 222222222 8 0 66 88888888888888888888888888888888888888888 5 2 5 5 5 2 00 11 888 1 5 00000 55 77 77 22222222 77 1 3 5 3 0 1 8 0 11 3 8 8 0 8 6 1 0 8 5555 8 11 1 444 0 8888 1 0 0 11 8 444 11 8 444 9999 8 8
lowQualScore : . .. . . . .. .... . . ................... . ... . .. . . .. .. . . . . ..... .. .. .. . .. . . ... . . ..... .. ...... . ..... . ..... . ... . .. . . . .. . . .. .. . . . . .... . . . ....... .. . . . ..... . .............. .... ............................................................. .... . . . ......... . . .. ......................................... . . . . . . .. .. ... . . ..... .. .. .. ........ .. . . . . . . . . .. . . . . . . . . . .... . .. . ... . .... . . . .. . ... .. . ... .... . .
lowQualScore : 0 55 0 8 0 77 5555 0 0 0000000000000000000 0 000 0 55 0 5 55 99 0 6 0 6 11111 00 00 00 6 00 0 0 000 0 0 00000 55 555555 0 00000 0 00000 0 555 0 00 0 0 0 77 6 6 44 00 0 0 0 0 2222 3 4 4 8888888 22 4 7 7 66666 2 66666666666666 1111 0000000000000000000000000000000000000000000000000000000000000 1111 5 6 0 000000000 0 8 44 77777777777777777777777777777777777777777 7 9 7 7 0 4 77 00 999 6 7 00000 77 99 99 66666666 99 4 0 7 0 8 4 0 8 66 2 0 0 8 0 0 4 8 0 0000 0 00 4 000 8 8888 4 8 8 00 0 000 00 0 000 6666 0 0
consensus : CACTCCACAGTGACATCAAGGAGA-TGGT--ATATTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCATTTTT-A-ATAGCA-ATGAATCANAATAATA-CATATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGTTACATGT--AC------CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-TAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTCT---T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTGTATGTAACCGTTTA--------------TCTATC----TATCTAT-TCG-TCT-ATCT-------TCTATCT-ATCC-------GTCTATCCAT-C-AT-------CCATC----CATAATGTTATAACAGTATGCAGTG-AT---------CGTT-AACTTCATCGTACATTTGCCCTGCA-------------CTTT-ACAC------------------CATTGT-TTACTTC-GCCAA-TTTATATCCAT-ATTCATACAAT-GCCAT-GACGTATATGTGCACGG--NAATTAGTA-AAACG-----AAGAC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAAGTCAAATATCAGTCA-GACACCAAATTTATAACGACATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTACAA---AATAGCAG-NNATACAGTGAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTTAATTCCATCATCG-TCAGAGTCAAAGA-TTCTCAGT
Reference ( family-7351 ) : CACTCCACAGTGACATCAAGGAGA-TGGT--ATATTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCATTTTT-A-ATAGCA-ATGAATCANAATAATA-CATATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGTTACATGT--AC------CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-TAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTCT---T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTGTATGTAACCGTTTA--------------TCTATC----TATCTAT-TCG-TCT-ATCT-------TCTATCT-ATCC-------GTCTATCCAT-C-AT-------CCATC----CATAATGTTATAACAGTATGCAGTG-AT---------CGTT-AACTTCATCGTACATTTGCCCTGCA-------------CTTT-ACAC------------------CATTGT-TTACTTC-GCCAA-TTTATATCCAT-ATTCATACAAT-GCCAT-GACGTATATGTGCACGG--NAATTAGTA-AAACG-----AAGAC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAAGTCAAATATCAGTCA-GACACCAAATTTATAACGACATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTACAA---AATAGCAG-NNATACAGTGAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTTAATTCCATCATCG-TCAGAGTCAAAGA-TTCTCAGT
gi|1 : AGGAGG-TA-T--ACATTATTTCCTTT-CAA--GTAATC----TTGATATG-T-AAAAGCCTTCATGGCG------------------AGAAA-A---CCA-TACA--ATG-TCATAACTGTTGG--TGAGCATTTTTCACATAGCA--TGAATCACAATAATA-CATATCACCCCT-----ACTC--AC--CC-----TATT-GTAATACTTTGAATT-TGC-CAAC---AATGAAGGAGGC-----TGATGCAGTTACATGT--AC------CGTTAGAGCT-----A-AAA--C--AA-GTTG---A-TTGTCACATT-GTG-C-AT--CGGGTGA-TC-AATA--TTTC--TAATGCTTGTG--CATAA---TA-GCGTGGATTAAT-CCTTATAGAGCA-TG-CATGATGAAATC-AAGATTCT---T--AAA-CACTTGTCACACTGTTCCCAAATGCGGCG-ATGAAATC-ATGTATCCACACCTTACTATAATGCACTGTATGTAACCGTTTA--------------CCTATC----TATCTATATCGATCTAATCTAGTATTATATATCTGATGCTTAGTTAGTCTATCTAT-CTATTTTCATACCATC----CATGA-GTTACAATAGTA-GCAGTGTAT---------CGTTGAACTTC--CGTAACTTTG-CCTG-A-------------CTTTAACATG-----------------CATTGTGTTACTTTGGCCAAGTTTAAATCCATGATCCATGCAA--GCCATGGGTGGATATGTGCACGA--CAATTAATA-AA--G-----AAGCCCGAAT--G-TGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAACTC-AATATTAGTCAGGACACCAAATTT-TAACGACATTATCTCTTTACATG-ATA-CTCAA-ATG---TTGTAGTGG-AGGCTTA-ATC----TAAT-TGGACTAT--AAGATTAA---AATAGCAGCGGATACAGTAAACAAT-AAAGTTAATTTCTA--AAT-GT---AAATCT-CAGA---GGAACTAATTTCCAAGTCAATT---TCATCG-TCAGAGTCAAAGA-TTCTCAGT
gi|10 : attcacccagatggcaagaagCACTCCACAGTGACATCAAGGAGA-TGTC--ATATTTTT-CCATT-CAAA-GTAATC----TTGATGTGCC-AGAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCAATTTT-G-ATAGCA-ATGAATCAGAATAATA-CATATGACCCCC-----ACCC--AC--CCA--A-TAGT-GTAATACTTTGAAAT-TAC-CAAC---AAC-AATGAG-C-----TGATGCAGTTACACGT--AC------CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TCACCA--TT-GTG-C-ATA-TAGGTAA-TC-Aatccagattattattatctactatcagattcaacaacagccagctgagatgttctgaccgtctacatatcacaaactcaatgcagttcaggtggttagcagacgtgacacttaaaaaaaattatctgctgcaa
gi|11 : attA--------------TCTATCTATTTATCTAT-CTG-CCT-GTCTC------TCTATCT-ATCT-------GTCTATCCATCC-AT-------CCATC----CATAATGTTATAATA-----------------------GTT-AACCAAATCGTACATTTGCCCTGCA-------------CTTT-ACACTTTACGTTTACAGTAACACATTGT-TTGCTTC-GCCAA-TTTATATCCAT-ATTCATACAAT-GCCAT-TACGCATATGTGCACGG--AAAGTAGTA-AAACG-----AAGAC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAAGTCAAAT
gi|12 : -ATGAATCAAAACAAT-------CACTCTC-----ACGC--TCTTCCC--ACTAA--GTAAT----TG--TT-TGC-CAAC---AAT-AGT-AG-C-----AGAT-C--TGAAATGTTAAC--------TTA-AGAT-----ATAAA--CCTAATAGTAT--AATTCTGA--TTCATG-CGATAATGGGTAAATCGAGTA--TTAC--TAATGCTTGTGACCATGAATATATTCTTGAATAATTCCCTTA-Acc
gi|13 : CACTCCACTATGACATCAAGGAGAATGGT--ATATATTTTCCTTTTCAAA-GTAATC----TTAATATGCTAAAAAGCCT-CTTCGC-------------------AGCAATATTTTCAGTACA--ATTCTCATAACTTTTGA--TG--------------AGCA-ATGAATCAGAA-AATATCATG-CACCCCC-----ACCC--A---CCC--A-TA----TAATACTTcc
gi|14 : cttA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-TAGTGTATAATT-CCTTA-ACACCA----C-TGG-AAAATCTGA-ATTCT---T--AA--CACTTGTC--------ACCAA-TGCAGCGTATGAAATA-A-----CCACACATCACTATAATAGAGTGTATGTAACTGgattt
gi|15 : ------------------CATTGT-T-ACTTC-GCCAG-TTTATATCT----TTCATTCAA----CAT--ACGTATACATGTAC-G--CA--TGATATAAATC-----AGGAT--AATGCGACGA--AAATAGACAA--TTTCAG-GGGATTTAAATGTAGAATCAc
gi|18 : taataCTCCGCAGTGACATCAAGGAGA-TGGT--ATA-----------------GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---ACA-CACA--AAT-TTATAACta
gi|2 : cttctCACTCAACAGTGACATCAAGGAGA-TGGT--ATATTTTT-CCTTT-CAAA-GTAATC----TTGATATACT-AAAAGCCT-CATCGCAGAAAACTTATACAACCGCAGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCATTTT--A-ATAGCA-ATGAATTAGAATAATA-CATATCACCC-------ACCC--AC--CCC--A-TATA-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGTTACATGT--AC------TCTCA-AGTT-----A-AAAAGA--AA-AGCGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-ATTAA-TTGCTATAATGCTTGTGA-CATGAAAATA-TTGTGGATAATT-CCTTA-AAACCA----C-TGGTAAATCT-AA-ATTCT---TTCAAA-CACTTGTCACACTGTCACCAA-TGCAGCGTATGAAATA-A-----CCACATATCACTATATTACAG---AT-TAACTGTTTA--------------TCTATA----TATCTAT-TCA-TTC-AT-------------------------------------T-C-AT-------CCATC----CATAATGCTATAGCATTATGCAGTG-AT---------CGTT-A--TCCA-CATGCATTTGCCCTGCA-------------CTTT-AC----------------------------------------------ATCCAT-ATTCATACAAT-GTCAT-AACGTATATGTGCACGG--AAAATAGTA-AGACAAATTTAAGAC--AAT--GATGA--AAAT----AT--TTT--GTGTGACTT-GATGCAAAGTCAAATATCAGTCA-GACACCAAACTTATGACAACGTTATCTCTTTACGTA-ATA-C--------ACCATGTAGTGAAAGGCTTA-ATTAATGTAAT-TGGAATAT--AAGTACAATTTAATAGCAA-ATATACAATGAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---AGAACTAATTTCCAAGTTAATTCCATCATCG-TCAGAGTTAAAGA-TCCTCAGTggcttaacaag
gi|20 : A--------------TCGATC----TATTGAT-TCA-TCT-ATCTA------TCTATCT-ATCC-------ATCCGCCCATCC-AT-------CCATC----Cgaagattatcattatcactatcagtaccaacgacagacactagaatgttctgaccgtctacatggtatgcacaaaactcgatgcagttaaggtggttcagcaaacagtgacacttaaaaaaattataagcttccacagt
gi|21 : -ACAC-------------------ATTGT-TTACTTC-GCCAA-TTTATGCCGGT-ATTCAcatccata
gi|3 : ATCAAGAAGA-TGGT--AT---TTTTTCTTT-CAAA-GTAATC----TTGATATGTT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TAATAACTTTTGA--TTAGCATTTTT-A-ATAGCA-ATGAATCACAATAATA-CATATCACCCCC-----AACC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGTTACATGT--AC------CGTTA-AGCT-----A-AAA--C--AA-AGTGT--A-ATGTAA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-CAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTC----T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTATATGTAACTGTTTA--------------TCTATC----TATCTA---------------------TCTATCT-ATC-------------------C-AT-------CCATC----CATAATGTTATAACAGTATGCAGTG-ATCGTTATTACCGTT-AACTTCATCGTACATTTGCCCTGCANNNNNNNNNNNNNNNNN-NNNN------------------NNNNNN-NNNNNNN-NNNNN-NNNNNNNCCAT-ATTCATACAAT-GCCAT-AACGTATATGTGCACGG--AAATTAGTA-AAACA-----AAGAC--AAT--GATGA--A-------------T--ATG-GA--T-GATGCACAGTCAAATATCAGCCA-GACACCAAATTTATAACGGCATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGAAAAGCTTA-ATC----TTAT-TGGACTAT--AAGTACAA---AATAGCAG-TTATACAGTGAACAATAAAAGTTAGTTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTTAATTCCATCATCG-TCAAAGTCAAAGA-TTCTCAGT
gi|4 : CACTCCACAGTGATATCAAGAGGA-TGGT--ATATTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TCATAACTGTTGG--TGAGCATTTTT-A-ATAGCA-ATGAATCACAATAATA-CATATCACCCCC-----ACTC--AC--CCT--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGTTACATGT--AC------CGTTA-AGCT-----A-AAA--C--AA-AGTGT--A-TTGTCA--TT-GTG-C-ATG-CGGGTGA-TC-AATAT-TTCC--TAATGCTTGTGA-CATAAAAATA-CAGTGGATAATA-CCTTA-AAACCAATG-CATGATGAAATC-AA-ATTC----T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATACATGTATCCACACATTACTATAATACACTGTATGTAACCGTTTACNNNNNNNNNNNNNNNNNNN----NNNNNNN-NNN-NNN-NNNN-------NNNNNNN-NNNN-------NNNNNNNNNN-N-NN-------TCATCCATCCATAATGTTACAATAGTATGCAGTG-AT---------CGTT-AACTTCATCGTACATTTGCCCTGCA-------------CTTT-ACAT------------------CATTGT-TTACTTT-GCCAA-TTAATATCCAT-ATCCATGCAAT-GCCAT-GGCGTATATGTGCACGA--CAATTAATA-AAACG-----AAGGC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAACTCAAATATTAGTCA-GACACCAAATTTATAACGACATTATCTCTTTACATG-ATA-CTCAA-ATGTCCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTTCAA---AATAGCAG-CGATACAGTAAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTCAAT----TCATCG-TCAGAGTCAAAGA-TTCTCAGTaaagattatcattatcactagtctatcagattcaacaacaaccattattacattcaacaacagccactagaatgttctgacc
gi|5 : CACTCCACAGTGACATCAAGGAGA-TGGT--ATATTTTT-----------------C----TTGGTATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--TCT-TTATAACTGTTGG--TGAACATTTTT-A-ATAGCA-ATGAATCACAATAATA-CACATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATAATTTGAATT-TGC-CAAC---AAC-AATGAA-C-----TGATGTAGTTACATGT--ACATGTACCGTTA-AGCT-----A-AAT--C--AA-AGTGT--A-TTGTCA--TT-GTG-T-ATG-TGGGTAA-TC-AGTAA-TTGC--CAATGCTTGTGA-CATAAAAATA-CAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTAT---T--AA--CACTTGTCACATTGCCATCAA-TGTGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTGTATGTAACAGTTTA--------------ACGATC----TATCTAT-T--------TNN-------NNNNNNN-NNNN-------NNNNNNNNNN-N-NN-------NNNNG----CATAATGGTATAACAGT
gi|6 : CAT-ATTCA---AATAGTTAT-GA------TGTGCACGGAATAATTAGTA-TAATGC----AAGACTAAAG--GATGAATAAAT----AAACCTT--GTGT---CT-GTTTC----TTAAAT-------------CTA---TTA-AAC---ATTATCTTTCCA-ATGCATATCTCAATATGAACTTGTAGT-GAAAACTTACATCT---TAATATGGCTTATACAAGTACAA---G--AGCA---------------AATAAA--TTAGCTTTTGATAATAGTATAAAA--TCCAGATTTAGAACTTATTT-CAATTTAAATTCAGCATCGTTCAGACTCCAATATTTTTCAGT
gi|7 : TCCACAGTGAC-TCAAGAGGA-TGGCTAATATTTTGTCTTTTTCAGACGTAATCAGACTTGATATGTT-AAA-GCCT--ATCGC-------------------AGACA-A---CCA-ATCATTAAT---ATCACTTTTGAATTTAGCATTTTT-A-A-AATACATGGATCATCATA-TA-CATAT-ACCTCTGATCTACCCTAAC--CCCCAA-TATTCGTAATACTTTGAATTATGCACGACCTGAAC-AATGAG-CGATATTGAT-CAGTTA-ATGT--ACG-----TGTTT-AGCTTCTAAA-GAA--C--AA-AGTGTGTA-TGGTCGAGTT-GTGGC-ATC-TGGGTAA-TC-GGTAAATTGT--TAATTCGTGAGA-CATGCAAATC-TAGTGGATAATT-CATT--ACACAAATGTCATGGTAAATTC-AA-ATTTTCTCT--AAAGCACTTtaacagtttatcattgtcgattccacaacaccacttagattactgttctgacctatactaagtgtatgctcaaaactagatgcagtaaagtggttcagcagagacacttaaaaaaattatcggctgtcac
gi|8 : agCACTCAACAGTGACATCAAGGAGA-TGGT--GTATTTTT-CCGTT-CAAA-GTAGTC----TTGACATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TGCA--AAT-TTATTACTGTTGA--CGAGCATTTTA-A-ATAGCA-ATGAATCAGAATGATA-CATATTACCCCC-----ACCA--AC--CCC--A-AATA-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGTTACCTGT--AC------CTTTA-AGCT-----A-A-------AA-AGCTC--A-TTCTCA--TT-ATG-C-ATG-TGGGTAA-TC-AGTAA-TTACTATAATGCTTGTGG-CATAATAATA-TAATCGACAATT-CCTTA-TAGCCA----C-TGGTAAATTT-AA-ATTttg
gi|9 : --TGAGCATATGT-A-ATAGCA-ATGAATCACAATAATA-CATATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---ATT-AATGAG-C-----TGATGCAGTTACATGT--AC------CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAACA-TAGTGGATAATT-CTTTA-AAACCACTG-CATGGTAAAATC-AA-ATACT---TTAAAA-TACTTGTCCCACTGTCACCAA-TGTGGCGTATGAAATA-A-----TCACACATCACTA-AAT
blockSeqs : A TA T T AC AGAC A . AGAAAACTTATACAACCGC T TTT G TT C AT T . C G T GATCT TA TT CA C TC A A CTG . . GATAT TA ATGTAC . TCTAA T CCT T TGT A AG C G G AA A G AA TA C T C . ATGT A T . TCTCT AG A . C TGTAT T CNNNNNNNNNNNNN TATT CTGCCTGTCTCTCTATCTATCTGTCTATCCATCCAT CATC T T . CGTTATTAC . AT CTTTACACTTTACGTTTACAGTAACAC . T . . . A TA T AAT G T AATTT TA GC AT AGACAA CA T C A G C . AT A C T T A A C AATG A AC A TTT AAT G AT A ATA . C TTT TCCA T T
blockSeqs : . . T T A . . . . . . . . . . T . . A . . . . . . T . . . . . . . G . . . AGA . C . . . . . A . . A TA . . . . ATG A . . TTTC A A . . . T . . TCATCTATCTATCTATCTATCCATCCGCCCATCCAT . G T . . . AT NNNNNNNNNNNNNNNNNNNNNN . T . . . T T A A A . C . . . AAAC . G T . A C . AT G . . . A A . T . . A . GTT G . . . . . . TCCA . .
blockSeqs : . . T . A . . . . . . . . . . T . . G . . . . . . A . . . . . . . . . . . C . T . . . . . G . . A . . . . . ATG A . . TTTA A A . . . T . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . G T . . . AT CTTTACATC . N . . . A T A C T . . . . . AA . T C . G T . AT G . . . T A . . . . T . GCG A . . . . . . TTCA . .
blockSeqs : . . T . A . . . . . . . . . . T . . G . . . . . . T . . . . . . . . . . . C . C . . . . . G . . A . . . . . ATG A . . TT A A . . . C . . TTNNNNNNNNNNNNNNNNNNNNNNNNNN . G . . . . A CTTTAC . T . . . A T G A T . . . . . AT . T C . G . . A . . . . A T . . . . A . . . . . . . . . . . .
blockSeqs : . . . . A . . . . . . . . . . T . . C . . . . . . T . . . . . . . . . . . C . T . . . . . G . . T . . . . . CTG A . . TT A C . . . A . . TCTATCTATCCAT . . . . . . . G T G A T . . . . . AA . T . . C
blockSeqs : . . . . A . . . . . . . . . . A . . C . . . . . . T . . . . . . . . . . . C . T . . . . . G . . A . . . . . . . . . T . . . . . . . TCATTCATTCAT . . . . . . . . . C . . . . . . . . . . . .
blockSeqs : . . . . A . . . . . . . . . . T . . C . . . . . . A . . . . . . . . . . . C . T . . . . . C . . A . . . . . . . . . T . .
blockSeqs : . . . . . . . . . . . . . . . . . . T . . . . . . T . . . . . . . . . . . C . C . . . . . G . . A . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . . C . . . . . G . . . . . . . .
blockSeqs : . C . . . . . . . . .
blockSeqCons : A* ******************* T* C** ** G* A* ATG* TT***** ***** AT CTTTACACTTTACGTTTACAGC******************* T* G* ** AT GNT* ** TCCA
originalCons : CACTCCACAGTGACATCAAGGAGA-TGGT--ATATTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCATTTTT-A-ATAGCA-ATGAATCANAATAATA-CATATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGTTACATGT--AC------CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-TAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTCT---T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTGTATGTAACCGTTTA--------------TCTATC----TATCTAT-TCG-TCT-ATCT-------TCTATCT-ATCC-------GTCTATCCAT-C-AT-------CCATC----CATAATGTTATAACAGTATGCAGTG-AT---------CGTT-AACTTCATCGTACATTTGCCCTGCA-------------CTTT-ACAC------------------CATTGT-TTACTTC-GCCAA-TTTATATCCAT-ATTCATACAAT-GCCAT-GACGTATATGTGCACGG--NAATTAGTA-AAACG-----AAGAC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAAGTCAAATATCAGTCA-GACACCAAATTTATAACGACATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTACAA---AATAGCAG-NNATACAGTGAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTTAATTCCATCATCG-TCAGAGTCAAAGA-TTCTCAGT
finalCons : CACTCCACAGTGACATCAAGGAGA-TGGT--ATATTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCATTTTT-A-ATAGCA-ATGAATCANAATAATA-CATATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGTTACATGT--AC------CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-TAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTCTT-----AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTGTATGTAACCGTTTA--------------TCTATC----TATCTAT-TCG-TCT-ATCT-------TCTATCT-ATCC-------GTCTATCCAT-C-AT-------CCATC----CATAATGTTATAACAGTATGCAGTG-AT---------CGTT-AACTTCATCGTACATTTGCCCTGCACTTTACACTTTACGTTTACAGC-------------------ATTGT-TTACTTC-GCCAA-TTTATATCCAT-ATTCATACAAT-GCCATG-ACGTATATGTGCACGG--NAATTAGTA-AAACG-----AAGAC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAAGTCAAATATCAGTCA-GACACCAAATTTATAACGACATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTACAA---AATAGCAGNT-ATACAGTGAACAATAAAAGTTAATTTCTA--AAT-GT---AAA--T-CAGA---GGAACTAATTTCCAAGTTAATTCCATCATCG-TCAGAGTCAAAGA-TTCTCAGT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATCACCATCAGATTCAACATCAGCCACTCTAATGTTCTGACCGTCTACATGGTATGCACAAAACTCAATGCAGGTAAGGTGGTTCAGGAGACAGTGACACTTAAGAAAATAG
Unaligned ( gi|17 ): TAATTTAGTCATTCCCATCATTGGCAGATTCTCAGTAAAGATTATTATTATCACTGTCAGAGTCAACAACAGTCACTAGAATGTTCGGACCGTCTACGTGTG
Unaligned ( gi|19 ): ATCAGATTCAACAACAGCCACTAGAATGGTAATGTGTTCAAAACTCAATGCAGTTACGGTGTTTCAGCAGACAGTGACGCT
Alignments
lowQualScore : 1 3333333333333333333 11111 111111 11111 11 11 1111 1111111 22222 33333333333333 9999999999999999999999999999999999999999999999999999999999999 1111 333333333 7777777777777777777 11 11 11111 11 11111111 2222 11 111 1111 11
lowQualScore : 4 55 3 0 8 44 8888 4 4 5555555555555555555 4 777 4 55 4 0 55 44 4 3 1 3 99999 55 55 55 3 66 4 4 777 4 4 00000 55 555555 4 00000 4 66666 4 888 4 11 4 4 4 44 3 3 77 11 4 4 4 4 7777 7 4 4 6666666 88 1 5 5 88888 2 33333333333333 7777777777777777777777777777777777777777777777777777777777777 2222 66 8 222222222 8 0 66 2 5555555555555555555 6 0 6 5 5 2 00 11 888 1 5 5 44444 55 77 77 22222222 77 1 3 5 3 0 1 8 0 11 3 8 8 0 8 6 1 0 8 5555 8 11 1 444 0 999 0 1 7777 0 8 0 11 9999 8 8
lowQualScore : . .. . . . .. .... . . ................... . ... . .. . . .. .. . . . . ..... .. .. .. . .. . . ... . . ..... .. ...... . ..... . ..... . ... . .. . . . .. . . .. .. . . . . .... . . . ....... .. . . . ..... . .............. ............................................................. .... .. . ......... . . .. . ................... . . . . . . .. .. ... . . . ..... .. .. .. ........ .. . . . . . . . . .. . . . . . . . . . .... . .. . ... . ... . . .... . . . .. .... . .
lowQualScore : 0 55 0 8 0 77 5555 0 0 0000000000000000000 0 000 0 55 0 5 55 99 0 6 0 6 11111 00 00 00 6 00 0 0 000 0 0 00000 55 555555 0 00000 0 00000 0 555 0 00 0 0 0 77 6 6 44 00 0 0 0 0 2222 3 4 4 8888888 22 4 7 7 66666 2 66666666666666 0000000000000000000000000000000000000000000000000000000000000 1111 44 0 000000000 0 8 44 2 3333333333333333333 7 8 7 7 0 4 77 00 999 6 7 7 33333 77 99 99 66666666 99 4 0 7 0 8 4 0 8 66 2 0 0 8 0 0 4 8 0 0000 0 00 4 000 8 666 8 4 0000 8 0 8 00 6666 0 0
consensus : CACTCCACAGTGACATCAAGGAGA-TGGT--ATATTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCATTTTT-A-ATAGCA-ATGAATCANAATAATA-CATATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGTTACATGT--AC------CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-TAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTCT---T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTGTATGTAACCGTTTA--------------TCTATCTATCTAT-TCG-TCT-ATCT-------TCTATCT-ATCC-------GTCTATCCAT-C-AT-------CCATC----CATAATGTTATAACAGTATGCAGTG-AT---------CGTT-AACTTCATCGTACATTTGCCCTGCACTTTACACTTTACGTTTACAG-----CATTGT-TTACTTC-GCCAA-TTTATATCCAT-ATTCATACAAT-GCCAT-GACGTATATGTGCACGG--NAATTAGTA-AAACG-AA-----GAC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAAGTCAAATATCAGTCA-GACACCAAATTTATAACGACATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTACAA---AATAGCAG-NTATACAGTGAAC----AATAAAAGT-TAATTTCTAAATGTAAA--TCAGAGGAACTAATTTCCAAGTTAATTCCATCATCG-TCAGAGTCAAAGA-TTCTCAGT
Reference ( family-7351 ) : CACTCCACAGTGACATCAAGGAGA-TGGT--ATATTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCATTTTT-A-ATAGCA-ATGAATCANAATAATA-CATATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGTTACATGT--AC------CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-TAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTCT---T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTGTATGTAACCGTTTA--------------TCTATCTATCTAT-TCG-TCT-ATCT-------TCTATCT-ATCC-------GTCTATCCAT-C-AT-------CCATC----CATAATGTTATAACAGTATGCAGTG-AT---------CGTT-AACTTCATCGTACATTTGCCCTGCACTTTACACTTTACGTTTACAG-----CATTGT-TTACTTC-GCCAA-TTTATATCCAT-ATTCATACAAT-GCCAT-GACGTATATGTGCACGG--NAATTAGTA-AAACG-AA-----GAC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAAGTCAAATATCAGTCA-GACACCAAATTTATAACGACATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTACAA---AATAGCAG-NTATACAGTGAAC----AATAAAAGT-TAATTTCTAAATGTAAA--TCAGAGGAACTAATTTCCAAGTTAATTCCATCATCG-TCAGAGTCAAAGA-TTCTCAGT
gi|1 : AGGAGG-TA-T--ACATTATTTCCTTT-CAA--GTAATC----TTGATATG-T-AAAAGCCTTCATGGCG------------------AGAAA-A---CCA-TACA--ATG-TCATAACTGTTGG--TGAGCATTTTTCACATAGCA--TGAATCACAATAATA-CATATCACCCCT-----ACTC--AC--CC-----TATT-GTAATACTTTGAATT-TGC-CAAC---AATGAAGGAGGC-----TGATGCAGTTACATGT--AC------CGTTAGAGCT-----A-AAA--C--AA-GTTG---A-TTGTCACATT-GTG-C-AT--CGGGTGA-TC-AATA--TTTC--TAATGCTTGTG--CATAA---TA-GCGTGGATTAAT-CCTTATAGAGCA-TG-CATGATGAAATC-AAGATTCT---T--AAA-CACTTGTCACACTGTTCCCAAATGCGGCG-ATGAAATC-ATGTATCCACACCTTACTATAATGCACTGTATGTAACCGTTTA--------------CCTATCTATCTATATCGATCTAATCTAGTATTATATATCTGATGCTTAGTTAGTCTATCTAT-CTATTTTCATACCATC----CATGA-GTTACAATAGTA-GCAGTGTAT---------CGTTGAACTTC--CGTAACTTTG-CCTG-ACTTTA------ACAT-----G-----CATTGTGTTACTTTGGCCAAGTTTAAATCCATGATCCATGCAA--GCCATGGGTGGATATGTGCACGA--CAATTAATA-AA--G-AA-----GCCCGAAT--G-TGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAACTC-AATATTAGTCAGGACACCAAATTT-TAACGACATTATCTCTTTACATG-ATA-CTCAA-ATG---TTGTAGTGG-AGGCTTA-ATC----TAAT-TGGACTAT--AAGATTAA---AATAGCAGCGGATACAGTAAAC----AAT-AAAGT-TAATTTCTAAATGTAAATCTCAGAGGAACTAATTTCCAAGTCAATT---TCATCG-TCAGAGTCAAAGA-TTCTCAGT
gi|10 : attcacccagatggcaagaagCACTCCACAGTGACATCAAGGAGA-TGTC--ATATTTTT-CCATT-CAAA-GTAATC----TTGATGTGCC-AGAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCAATTTT-G-ATAGCA-ATGAATCAGAATAATA-CATATGACCCCC-----ACCC--AC--CCA--A-TAGT-GTAATACTTTGAAAT-TAC-CAAC---AAC-AATGAG-C-----TGATGCAGTTACACGT--AC------CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TCACCA--TT-GTG-C-ATA-TAGGTAA-TC-Aatccagattattattatctactatcagattcaacaacagccagctgagatgttctgaccgtctacatatcacaaactcaatgcagttcaggtggttagcagacgtgacacttaaaaaaaattatctgctgcaa
gi|11 : attTCTA--------------TCTATTTATCTAT-CTG-CCT-GTCTC------TCTATCT-ATCT-------GTCTATCCAT-CCAT-------CCATC----CATAATGTTATAATAGT-----------------------T-AACCAAATCGTACATTTGCCCTGCACTTTACACTTTACGTTTACAGTAACACATTGT-TTGCTTC-GCCAA-TTTATATCCAT-ATTCATACAAT-GCCAT-TACGCATATGTGCACGG--AAAGTAGTA-AAACG-AA-----GAC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAAGTCAAAT
gi|12 : a-ATGAATCAAAACAAT-------CACTCTC-----ACGC--TCTTCCC--ACTAA--GTAAT----TG--TT-TGC-CAAC---AAT-AGT-AG-C-----AGAT-C--TGAAATGTTAAC--------TTA-AGAT-----ATAAA--CCTAATAGTAT--AATTCTGA--TTCATG-CGATAATGGGTAAATCGAGTA--TTAC--TAATGCTTGTGACCATGAATATATTCTTGAATAATTCCCTTA-Acc
gi|13 : CACTCCACTATGACATCAAGGAGAATGGT--ATATATTTTCCTTTTCAAA-GTAATC----TTAATATGCTAAAAAGCCT-CTTCGC-------------------AGCAATATTTTCAGTACA--ATTCTCATAACTTTTGA--TG--------------AGCA-ATGAATCAGAA-AATATCATG-CACCCCC-----ACCC--A---CCC--A-TA----TAATACTTcc
gi|14 : cttA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-TAGTGTATAATT-CCTTA-ACACCA----C-TGG-AAAATCTGA-ATTCT---T--AA--CACTTGTC--------ACCAA-TGCAGCGTATGAAATA-A-----CCACACATCACTATAATAGAGTGTATGTAACTGgattt
gi|15 : -----CATTGT-T-ACTTC-GCCAG-TTTATATCT----TTCATTCAA----CAT--ACGTATACATGTAC-G--CA--TGATATAAATC-AG-----GAT--AATGCGACGA--AAATAGACAA--TTTCAG-GGGATTTAAATGTAGAATCAc
gi|18 : taataCTCCGCAGTGACATCAAGGAGA-TGGT--ATA-----------------GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---ACA-CACA--AAT-TTATAACta
gi|2 : cttctCACTCAACAGTGACATCAAGGAGA-TGGT--ATATTTTT-CCTTT-CAAA-GTAATC----TTGATATACT-AAAAGCCT-CATCGCAGAAAACTTATACAACCGCAGAAA-A---CCA-TACA--AAT-TTATAACTGTTGA--TGAGCATTTT--A-ATAGCA-ATGAATTAGAATAATA-CATATCACCC-------ACCC--AC--CCC--A-TATA-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGTTACATGT--AC------TCTCA-AGTT-----A-AAAAGA--AA-AGCGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-ATTAA-TTGCTATAATGCTTGTGA-CATGAAAATA-TTGTGGATAATT-CCTTA-AAACCA----C-TGGTAAATCT-AA-ATTCT---TTCAAA-CACTTGTCACACTGTCACCAA-TGCAGCGTATGAAATA-A-----CCACATATCACTATATTACAG---AT-TAACTGTTTA--------------TCTATATATCTAT-TCA-TTC-AT-------------------------------------T-C-AT-------CCATC----CATAATGCTATAGCATTATGCAGTG-AT---------CGTT-A--TCCA-CATGCATTTGCCCTGCACTTTACAggcttaacaag
gi|2 : CAC-TTTACATCCAT-ATTCATACAAT-GTCAT-AACGTATATGTGCACGG--AAAATAGTA-AGACA-AATTTAAGAC--AAT--GATGA--AAAT----AT--TTT--GTGTGACTT-GATGCAAAGTCAAATATCAGTCA-GACACCAAACTTATGACAACGTTATCTCTTTACGTA-ATA-C--------ACCATGTAGTGAAAGGCTTA-ATTAATGTAAT-TGGAATAT--AAGTACAATTTAATAGCAA-ATATACAATGAAC----AATAAAAGT-TAATTTCTAAATGTAAA--TCAGAAGAACTAATTTCCAAGTTAATTCCATCATCG-TCAGAGTTAAAGA-TCCTCAGTtccatattcatacaatgtcataacgtatatgtgcacggaaaatagtaagacaaatttaagacaatgatgaaaatattttgtgtgacttgatgcaaagtcaaatatcagtcagacaccaaacttatgacaacgttatctctttacgtaatacaccatgtagtgaaaggcttaattaatgtaattggaatataagtacaatttaatagcaaatatacaatgaacaataaaagttaatttctaaatgtaaatcagaagaactaatttccaagttaattccatcatcgtcagagttaaagatcctcagtgaagattatcattatcactatcagtaccaacgacagacactagaatgttctgaccgtctacatggtatgcacaaaactcgatgcagttaaggtggttcagcaaacagtgacacttaaaaaaattataagcttccacagt
gi|20 : cactcaacagtgacatcaaggagatggtatatttttcctttcaaagtaatcttgatatactaaaagcctcatcgcagaaaacttatacaaccgcagaaaaccatacaaatttataactgttgatgagcattttaatagcaatgaattagaataatacatatcacccacccaccccatatagtaatactttgaatttgccaacaacaatgagctgatgcagttacatgtactctcaagttaaaaagaaaagcgcattgtcattgtgcatgtgggtaatcattaattgctataatgcttgtgacatgaaaatattgtggataattccttaaaaccactggtaaatctaaattctttcaaacacttgtcacactgtcaccaatgcagcgtatgaaataaccacatatcactatattacagattaactgtttatctatatatctattcattcattcatccatccataatgctatagcattatgcagtgatcgttatccacatgcatttgccctgA--------------TCGATCTATTGAT-TCA-TCT-ATCTA------TCTATCT-ATCC-------ATCCGCCCATCC-AT-------CCATC----Cgaagattatcattatcactatcagtaccaacgacagacactagaatgttctgaccgtctacatggtatgcacaaaactcgatgcagttaaggtggttcagcaaacagtgacacttaaaaaaattataagcttccacagt
gi|21 : ACA------CATTGT-TTACTTC-GCCAA-TTTATGCCGGT-ATTCAcatccata
gi|3 : ATCAAGAAGA-TGGT--AT---TTTTTCTTT-CAAA-GTAATC----TTGATATGTT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TAATAACTTTTGA--TTAGCATTTTT-A-ATAGCA-ATGAATCACAATAATA-CATATCACCCCC-----AACC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGTTACATGT--AC------CGTTA-AGCT-----A-AAA--C--AA-AGTGT--A-ATGTAA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAATA-CAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTC----T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTATATGTAACTGTTTA--------------TCTATCTATCTA---------------------TCTATCT-ATC-------------------C-AT-------CCATC----CATAATGTTATAACAGTATGCAGTG-ATCGTTATTACCGTT-AACTTCATCGTACATTTGCCCTGCANNNNNNNNNNNNNNNNNNNNN-----NNNNNN-NNNNNNN-NNNNN-NNNNNNNCCAT-ATTCATACAAT-GCCAT-AACGTATATGTGCACGG--AAATTAGTA-AAACA-AA-----GAC--AAT--GATGA--A-------------T--ATG-GA--T-GATGCACAGTCAAATATCAGCCA-GACACCAAATTTATAACGGCATTATCTCTTTACGTG-ATA-CTCAA-ATGACCATGTAGTGAAAAGCTTA-ATC----TTAT-TGGACTAT--AAGTACAA---AATAGCAG-TTATACAGTGAAC----AATAAAAGT-TAGTTTCTAAATGTAAA--TCAGAGGAACTAATTTCCAAGTTAATTCCATCATCG-TCAAAGTCAAAGA-TTCTCAGT
gi|4 : CACTCCACAGTGATATCAAGAGGA-TGGT--ATATTTTTTCCTTT-CAAA-GTAATC----TTGATATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--AAT-TCATAACTGTTGG--TGAGCATTTTT-A-ATAGCA-ATGAATCACAATAATA-CATATCACCCCC-----ACTC--AC--CCT--A-TATT-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGTTACATGT--AC------CGTTA-AGCT-----A-AAA--C--AA-AGTGT--A-TTGTCA--TT-GTG-C-ATG-CGGGTGA-TC-AATAT-TTCC--TAATGCTTGTGA-CATAAAAATA-CAGTGGATAATA-CCTTA-AAACCAATG-CATGATGAAATC-AA-ATTC----T--AAA-CACTTGTCACACTGTCACCAA-TGCGGCGTATGAAATACATGTATCCACACATTACTATAATACACTGTATGTAACCGTTTACNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN-NNN-NNNN-------NNNNNNN-NNNN-------NNNNNNNNNN-N-NN-------TCATCCATCCATAATGTTACAATAGTATGCAGTG-AT---------CGTT-AACTTCATCGTACATTTGCCCTGCACTTTACAT------------------CATTGT-TTACTTT-GCCAA-TTAATATCCAT-ATCCATGCAAT-GCCAT-GGCGTATATGTGCACGA--CAATTAATA-AAACG-AA-----GGC--AAT--GATGA--AAAT----AA--TTT--GTGTGACTT-GATGCAAACTCAAATATTAGTCA-GACACCAAATTTATAACGACATTATCTCTTTACATG-ATA-CTCAA-ATGTCCATGTAGTGGAAGGCTTA-ATC----TAAT-TGGACTAT--AAGTTCAA---AATAGCAG-CGATACAGTAAAC----AATAAAAGT-TAATTTCTAAATGTAAA--TCAGAGGAACTAATTTCCAAGTCAAT----TCATCG-TCAGAGTCAAAGA-TTCTCAGTaaagattatcattatcactagtctatcagattcaacaacaaccattattacattcaacaacagccactagaatgttctgacc
gi|5 : CACTCCACAGTGACATCAAGGAGA-TGGT--ATATTTTT-----------------C----TTGGTATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TACA--TCT-TTATAACTGTTGG--TGAACATTTTT-A-ATAGCA-ATGAATCACAATAATA-CACATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATAATTTGAATT-TGC-CAAC---AAC-AATGAA-C-----TGATGTAGTTACATGT--ACATGTACCGTTA-AGCT-----A-AAT--C--AA-AGTGT--A-TTGTCA--TT-GTG-T-ATG-TGGGTAA-TC-AGTAA-TTGC--CAATGCTTGTGA-CATAAAAATA-CAGTGGATAATT-CCTTA-AAACCAATG-CATGGTAAAATC-AA-ATTAT---T--AA--CACTTGTCACATTGCCATCAA-TGTGGCGTATGAAATA-A-----CCACACATCACTATAATACAGTGTATGTAACAGTTTA--------------ACGATCTATCTAT-T--------TNN-------NNNNNNN-NNNN-------NNNNNNNNNN-N-NN-------NNNNG----CATAATGGTATAACAGT
gi|6 : CAT-ATTCA---AATAGTTAT-GA------TGTGCACGGAATAATTAGTA-TAATGCAA-----GACTAAAG--GATGAATAAAT----AAACCTT--GTGT---CT-GTTTC----TTAAAT-------------CTA---TTA-AAC---ATTATCTTTCCA-ATGCATATCTCAATATGAACTTGTAGT-GAAAACTTACATCT---TAATATGGCTTATACAAGTACAA---G--AGCAA-ATA---AATTAGCTTTTGATAATAGTATAAAATCCAGATTTA----------GAACTTATTT-CAATTTAAATTCAGCATCGTTCAGACTCCAATATTTTTCAGT
gi|7 : TCCACAGTGAC-TCAAGAGGA-TGGCTAATATTTTGTCTTTTTCAGACGTAATCAGACTTGATATGTT-AAA-GCCT--ATCGC-------------------AGACA-A---CCA-ATCATTAAT---ATCACTTTTGAATTTAGCATTTTT-A-A-AATACATGGATCATCATA-TA-CATAT-ACCTCTGATCTACCCTAAC--CCCCAA-TATTCGTAATACTTTGAATTATGCACGACCTGAAC-AATGAG-CGATATTGAT-CAGTTA-ATGT--ACG-----TGTTT-AGCTTCTAAA-GAA--C--AA-AGTGTGTA-TGGTCGAGTT-GTGGC-ATC-TGGGTAA-TC-GGTAAATTGT--TAATTCGTGAGA-CATGCAAATC-TAGTGGATAATT-CATT--ACACAAATGTCATGGTAAATTC-AA-ATTTTCTCT--AAAGCACTTtaacagtttatcattgtcgattccacaacaccacttagattactgttctgacctatactaagtgtatgctcaaaactagatgcagtaaagtggttcagcagagacacttaaaaaaattatcggctgtcac
gi|8 : agCACTCAACAGTGACATCAAGGAGA-TGGT--GTATTTTT-CCGTT-CAAA-GTAGTC----TTGACATGCT-AAAAGCCT-CATCGC-------------------AGAAA-A---CCA-TGCA--AAT-TTATTACTGTTGA--CGAGCATTTTA-A-ATAGCA-ATGAATCAGAATGATA-CATATTACCCCC-----ACCA--AC--CCC--A-AATA-GTAATACTTTGAATT-TGC-CAAC---AAC-AATGAG-C-----TGATGCAGTTACCTGT--AC------CTTTA-AGCT-----A-A-------AA-AGCTC--A-TTCTCA--TT-ATG-C-ATG-TGGGTAA-TC-AGTAA-TTACTATAATGCTTGTGG-CATAATAATA-TAATCGACAATT-CCTTA-TAGCCA----C-TGGTAAATTT-AA-ATTttg
gi|9 : --TGAGCATATGT-A-ATAGCA-ATGAATCACAATAATA-CATATCACCCCC-----ACCC--AC--CCC--A-TATT-GTAATACTTTGAATT-TGC-CAAC---ATT-AATGAG-C-----TGATGCAGTTACATGT--AC------CGTTA-AGCT-----A-AAA--C--AA-AGTGC--A-TTGTCA--TT-GTG-C-ATG-TGGGTAA-TC-AGTAA-TTGC--TAATGCTTGTGA-CATAAAAACA-TAGTGGATAATT-CTTTA-AAACCACTG-CATGGTAAAATC-AA-ATACT---TTAAAA-TACTTGTCCCACTGTCACCAA-TGTGGCGTATGAAATA-A-----TCACACATCACTA-AAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATCACCATCAGATTCAACATCAGCCACTCTAATGTTCTGACCGTCTACATGGTATGCACAAAACTCAATGCAGGTAAGGTGGTTCAGGAGACAGTGACACTTAAGAAAATAG
Unaligned ( gi|17 ): TAATTTAGTCATTCCCATCATTGGCAGATTCTCAGTAAAGATTATTATTATCACTGTCAGAGTCAACAACAGTCACTAGAATGTTCGGACCGTCTACGTGTG
Unaligned ( gi|19 ): ATCAGATTCAACAACAGCCACTAGAATGGTAATGTGTTCAAAACTCAATGCAGTTACGGTGTTTCAGCAGACAGTGACGCT