lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 11111111 1111 1 11 1 11 2222222 11 11111 888888888888888888888888888 33333333 1111 1111 222222222 1111 1 222222222222 22222222 777777777777777777777777777777777777777777777 22222222 11111111 222 33333333 111 111 222 1111 11 11 1 2222222 1 1 7777777777777 1 2 1 1 333333 66666666666 2 444444444444444444444444444444444444444444444444444 1 1 1 22 1 1 1 111 111 222 7777777777777777 1 1 1 22 1111111 2222222 11 11 11111 22222222222 111 11 1111 1111 3333333333333 1111111 777777777777777777 222222222 11111 3333333 111111 1 1111 11 11 111
lowQualScore : 2 0 66666666 99 4 4444 1 7 3 0 55 77 7 88 66 1111111 00 0 2 5 5 1 00000 2 222222222222222222222222222 5 2 88 33333333 4 6 4 4 2 4 1 4 0 4 5 4444 5 0000 2 111111111 0000 0 5 66 22 000000000000 0 66 44444444 666666666666666666666666666666666666666666666 33333333 8888 33333333 6 000 1 88888888 8 8 444 6 222 222 1 7777 1 1 11 11 8 2 3 2222222 55 6 7 4 7777777777777 4 3 6 3 3 6 111111 4 6 6 44444444444 7 3 555555555555555555555555555555555555555555555555555 3 3 0 3 66 0 3 5 0 777 3 2 77 2 3 333 666 4444444444444444 6 0 4 0 22 7777777 2222222 1 11 3 88 77777 77777777777 999 22 2222 2222 77 6666666666666 5 8888888 000000000000000000 1 222222222 77 00000 0 6 6 6 5 5 8888888 6 444444 888 5 0 5 1 7 55 0 0000 55 33 1 444 77 6 66 4 4 5 888 6 4
lowQualScore : . . ........ .. . .... . . . . .. .. . .. .. ....... .. . . . . . ..... . ........................... . . .. ........ . . . . . . . . . . . .... . .... . ......... .... . . .. .. ............ . .. ........ ............................................. ........ .... ........ . ... . ........ . . ... . ... ... . .... . . .. .. . . . ....... .. . . . ............. . . . . . . ...... . . . ........... . . ................................................... . . . . .. . . . . ... . . .. . . ... ... ................ . . . . .. ....... ....... . .. . .. ..... ........... ... .. .... .... .. ............. . ....... .................. . ......... .. ..... . . . . . . ....... . ...... ... . . . . . .. . .... .. .. . ... .. . .. . . . ... . .
lowQualScore : 5 1 11111111 55 8 2222 0 3 5 4 77 99 0 88 11 6666666 44 1 6 0 0 4 88888 2 222222222222222222222222222 0 0 77 99999999 4 7 4 4 3 4 1 4 1 4 0 8888 0 6666 0 444444444 6666 1 0 11 66 111111111111 3 11 33333333 333333333333333333333333333333333333333333333 22222222 7777 44444444 0 000 8 66666666 0 0 000 0 444 222 4 0000 8 0 00 00 0 6 8 8888888 00 0 0 0 5555555555555 0 3 7 3 3 0 777777 0 0 0 00000000000 3 3 000000000000000000000000000000000000000000000000000 3 3 7 3 33 0 2 0 0 888 2 5 88 0 2 000 000 0000000000000000 5 0 2 5 88 2222222 0000000 4 00 2 00 11111 77777777777 000 00 1111 1111 99 0000000000000 7 6666666 444444444444444444 7 666666666 99 44444 3 0 7 7 0 0 6666666 0 444444 888 7 1 0 4 0 88 4 6666 11 00 0 999 11 0 11 2 4 0 888 0 0
consensus : AGTGATCNTGAGTCGGACA--------CCCTG-CTCTTT----CCTTTTCGTATGCAGATTTCTTCCGACTGTTT-CCCCTATG--GTATTTGGTGTTGCCCGAAA-GAGCTCGA--AA---A-C-GTGTACTATTTTNT-GCT-CGGATCACCTTGGTAT----TCTACC-CA-AACT--------CAT-------TTAGA-TGCGAN-AA-A------CTCCCAA-CATCNAAAT-T-CGNTC-GTAA-GTCGGACA-CATTTGA-TAT---TGAG-T----CGGACACTCG-------TAT----TATTATGAAT--TACACAGCCAGGT-A--NCTAA-A-TTACAGGTAT--TCT-GC-----TGACAAT-ANT-T-CTT-TAAT--TTTT-----------------------TTTTTTTA-------TAACT-AAAT-AATTT--AAAACCAGGTGT-AACGAATCA------ACAAT-AAAG-TTATACCAACCA---GGCAC-GAAGAATGAGGGAG----GGAACACATTTT--TACAA--CGTT-CATTTTCTGTTATTTCTGCACGTATAAAG-TGATTCGAATTTCCACATGCAAAATAAGATATGNTGAGTGATCCCCATGCGGNCATTGTTAAA-AGTAGGTTTTAAA-AAT-AATTTCCCCC-TCATGTATTGACCTCATTTTCTTCCAACGCTTGAA--ATTT--A-CGTGATTTTCAAGGTGGACTGA-------TGT--------GT-TCGAATATCGGCA--------AT-----TT-AC-TGTCC-GACT-CAA-GATCAAATTGACTCATTGCGTTTGAA-CTTGAATATTTCAAAATAGAATATAAAGTTTTTCAAAAGAAACATAT-------------ATGCATTCTATA-TTTTCAATAAT-NAATTT--ATCAAATATT-----T-GTAAATAACA--CATTCAA-GTAA-A-T-GTCT---T------TTACACATTTTGN--AAAGT-ATA----AG----AAGTTT--GATC----------G-ATCA-AAATA-------TAACCTGGCGGATCTTCGAT----------------T-TTTCCGGGTTT------CA-GTAC--TTTTG--A--TGAGCGAATGTAAAAATAACTCTAACGTCGTT-ATTGAATATA-AGAAGAAAAC-T-TTT-T----AAAGTTTA------ATTATTACT---CTAAATAGT-CAATCACAGACAAA-GACGAATTTATTGCATTAAA-TTTG----TTTAAATGAACATCAAA-G-TTGTCC-GACT--TTAGAT-CGTGT-CCGA---CTCAAGATCACTTTAC
Reference ( gi|2 ) : AGTGATCGTGAGTCGGACA--------CCCTA-CCCTTT----CCTTTTCGTATACAGATTTCTTCCGACTGTTT-TCCCTATA--GTAATTGGTGTTGCCCGAAT-GAGCTCGA--AA---A-C-GTGTACTATTTTTT-GCT-CGGATCACCTTGGTAT----TCTAC-------TT--------CAT-------TTAGA-TGCAAT-AA-T------CTCCCAA-TATCTAAAT-T-CGTTC-GTAA-GTCGGACA-CATTTGA-TAC---TGAG-T----CGGACGCTTA-------TAT----TATTATCAAT--TACACAGCCAGGT-A--TTTAA-A-TTACAAGTAT--TCT-GT-----TGACAATGGGT-T-CTT-TGAT--TTTT-----------------------TTTTTTTA-------TAATT-AAAT-ATTCT--AAAACCAGATAC-AATGAATC-------GCAAT-AAAG-TTGTACCAACCA---GACAT-AAAGAATGATGGAG----GAAACACATTTT--TACAA--CGTT-CATATTCTGTTATTTCTGCATGTGTAAAGTTGATTCGAATTTTCAAATGCAAAATAAGTTATGTTGAGTTATCTCATTACAGACATTGTTAAA-AGTAGGTTT-AAA-AAT-AACTTTTCCCCTCATATATTGACCTCATTTTCTTCCAACGTTTAAAAGATAT--G-TGTGATTTTCAATGTGGACTG--------TGT--------GTATCAAATATCCACA--------AT-----TT-AC-TGCCC-GACA-CAA-GATCAAATTGACTAATTGCGTTTGAA-CTTAATTATTTCAAAGTGGAATATAAAGTTGT-CAAAAGAAACATAT-------------ATGCATTCTTTA-TTTCCAATGAT-GAATTT--ATCAAATATT-----T-GTAAATAACA--CATTCAA-GTAA-A-T-GTCT---T------CTACACATTTTGT--AAAGT-GTA----AG----AAGTTT--GATC----------G-TTCA-AAATA-------TAACCTGGCGGATCTTCGAT----------------TCTTTTCGGGTTT------CA-GTAC--TTTTG--A--TGAGCGAATGTAAAAATAACTCTAATGTCGTT-ATTGAATATA-AGAAGAAAAC-T-TTT-C----GAAGTTCA------ATTATTACT---CTAAATAGT-CAATCACAGACAAA-GACGAATTCATTGCATTAAA-TTTG----TTTAAATGTACATCAAA-A-TTGTCC-AATT--TCAGAT-CGTGT-CCGA---CTTAAGATCACCTTACT
gi|1 : AGTGATCGTGAATCGGACA--------CCCTG-CTCTTT----CCTATTTGCATGTTGATTTCTTCCAACTGTTT-CCCCTATG--GTATTTGGTGTCGCCCAAAA-GAGCTCGA--AA---T-T-GTGAAC--TTTTTT-ACT-CGGATCACCTTCTTA--------AA-------TT--------CAT-------TCAGA-TGCGAT-AA-A------CACCCAA-CATCCAAAT-T-TGTTT-GTAA-GTCGGACA-CATTTGATTAT---TGAA-TCATGCAGACACGCA-------AAT----TATTATGAAT--TATACAGGCAGGT-AACTTT-----TTGCAGGTAT--TCT-GC-----TTACAA
gi|8 : aAGTGATCGTGAGTCGGATA--------CCCAG-CTCTTT----CCTTTTCATATGCATATTTCTTCCGACTGTTT-TCCCTATA--GTATTTGGTGTTGCCCGAAA-GAATTCGA--AA---A-C-GTGTACTATTTTTTTGCT-CGGATCACTTTGGTAT----TCTACCTCATAATT--------CAT-------TTAGA-TGCAAT-GA-A------CTCCCAA-TATCTAAAT-T-CGTTC-GTAA-GTCAGACA-CATTTGA-TGT---TGAG-T----CGGACGCTCA-------TAT----CATTATGAAT--TACACAGCCATGT-A--ACTAA-A-TTACAAGTAT--TCT-GT-----TGACAATTATT-T-TTA-TAAT--TTAT-----------------------TTTTTacattttataactttgtatgaattttcattaaaatcttaatttaataagataagagggctctttattttttctaattaaattattcaaatcaggtgtaatgaatcaattaaggtaataaatttaaaccaaactggcacgtagaatggggtagggggcacctttttacaagttgttcattttctgttatttctacacataaatttttatatgcaaaataagatataatgccccggtcattgttaaaagtaggttttaaagataatttattgaccccattttctcccaacacttgagatttcgatgtgattttcaaggtggactgactgtccgattttgtttcaaatatcgacatttaaatgattttactgcccagactcaagatcaaatagactcattgtgtttgaacttgaatatttcaaaatagaatgtaaattttttcgcaagaaacacatgtacatctataatatacattctatattttcattaatatttatcataaatttatgaataatacattcaagtaatattgtctcttacactttttaaaaaatttaagaagtttgatcgatcaaaatataacctggcggatcttcgatttttccgggtttcagtacttttcttggttgagtgtaaaaacaactgtaacaccgtaattgattatcagaagacaacttttttaaaaaagtttgattattgctctgtaaagtcaatcacagaggaagatgaatctattgcattaattttgttagaatcaacatcaaagtttgtcagcctgtagattgtatctgactcaagatcattttacc
gi|9 : aAGTGATCTTGAGTCGGACA--------Cgtgaacatataagataa
gi|5 : aatgcaaataatatacatataataatttacacattttgcaaagtataagaagtttgatcaatcaaaatatagcctggctgatctttgatttttccgggttttattacttttgattagcggatgtaaaaataactcaaacgtcgttattgaatatatataagaacacttttcaaaatttaattattactctaaatagtcaatcacagacaaagacgaatttattgcattaaattttttttaaatgaacatcaaagttgtccgactttagatcAGTGATCGTAAGTCAGACA--------CCCTA-CTCTTT----CCTTTTCGTATGCAGATTTATTACGACTGTTT-CTCCTATA--GTATTTAGTGCTGCTTGATA-GAACTAGA--AATTGA-T-GTG---TATTTCAT-GCT-CAGATCACCATGGTAT----TTTAC-------CTCATAATG-CAT-------CTAGA-TGCGAT-AA-A------CTCCCAA-CAATGAAAT-T-CAATC-TTGA-TTCGGACA-CATTTAA-TAT---TGAGTT----CAGACACTAG-------GAT----TATTATGAAT--T--ATAAC---------TTTAATACTTACAGGTAT--TTC-AT-----GGACAAttaa
gi|10 : aaAGTGATCTTGAGCCGAA-A--------CCCTT-CACTCT----CCCTTTCGTATTCAGATTATTTCCGACTGTCT---CCTGAG--GTATTTGGTGTTACTCGAAA-GAGCTCGA--AAT--A-TTGTGTACTATTATCT-GCT-CGGATCAC--TG----------TGC-------------------------------A-TGCGAC-AA-A------CTCCCAA-CATCGAAAT-T-CGGTC-GTAC-GTCGGACA-CATTC-A-TTT---TCAG-T----CGGACACTGA-------TAT-------------T--TATAAAGTCGGGTCG--CATAT-A-TCGCTGGTAT--TCT-AC-----TGATAACAATT-T-C-A-TAAT--TTAC-----------------------TTTTTGTA-------ctattttacaatttactttttgtgaatgcgcatggatttttattaaaatcatatttaatatatataagagctagggtacttgaattttataactgaataatttaaaaccaggtgtaaggaatagagttgtacctgctatgaggcacgtggaataagggagctagggaacacttttttacaacgttcattttccgttatttgttcatgtaaagttgatt
gi|18 : aAGTGATCTTGAGTCGGACA--------Caacacgt
gi|16 : tgagaaaacatttttaaagtttaattattactgtaaatagtcaatcacagacaaagacgaatttattgcattaattttgttcaaatgaacaccaaagttgtccgactttagattAGTGATCTTGAGTCGGACA--------Cttacc
gi|6 : tctaacgtcattattgaatatacgaagaaaacttttaaagtttaattattactctaaacagtcaaccacagacaaaaacgagtttattgcattaattttgttaattaatttaagttgtttaactttagatcTCGTGAGTCGGACA--------CCCTG-CCTCTTATTGCCCTTTCGT-T-CAGATTTCATCCGACTGTTCGCCCCTATA--GTATTTGGTGTTGCCCGAAA-GAGCTCGA--AA---ATT-GTGT-CT-CTTTTT-GCTCCGGATC-CCTTGGTAT----TCTACCTCAAAATT--------CATC------TTAGACTCCCAA-AA-A------CTCCCAA-TATCT--ATCT-CGTTCGGTAA-GTC-GACGCCATTTGA-TAT---TG-G-T----CGGACACTCA-------TAT----T-TTATGAAT--TACACAGCC-GGA-A--ACTAA-A-TTACAAGTAT--ACT-AA-----TAAAAA-AAAT-TACAT-TTAT--TTTTTGTAAACATCATAATATAGAGAGTTTCTTTATTTTTTTTAACTGAAAT-GATTTAAAAAACCAGGTGTAAACGAATCA------ACAATCAAAGTTTATA-CAACCA---GGCATGAAAGGAT--TAAAG----GAAACACATTTTTCTAAAA--CGTTCCATGTTCTGTTATTTCTGCATGTt
gi|21 : GAGTCGGAAATTAGGAAGCCCCAGTTCTTT----TCTTTTC-T-TGCAGATGTTTTCCTAATG-------CCATG--GTATTTGATGTTGCCCGAGA-GAGATCGA--AA---a
gi|12 : ggGATTTTTTTCGGCTATTT-CCCCTACATGGTATTTAGTGTTGCC-GGATAGAGCTCGA--AA---T-T-GTATACTATTTTAT-GCT-CAGATCACACTGGCAT----TTTAC-------CT--------CATAATGCATCTAGA-TGCGATCAACT------CTCTCAA-CATCAAAAT-T-CGTTC-GCAC-GTCGGCCA-CACTTGA-TTT---TGAG-T----CATACACGCG-------TAT----TATTATGAAA--TATACAGGTAGGTAA--CTT---A-TTGCAGGTGT--TTT-TC-----TGACA---GCTAT-CTTATAAT--TTAC-----------------------TTTTTtt
gi|11 : TTGGTGTTGCCCGAAA-GAGCACGA--AA---A-C-GTGCACTATTTTTT-GCC-CGGACCACCTTGGTATATATTCTACCCCATAATT--------CAT-------TTAGA-TGCAAA-AA-AAAAAAACTCCCAA-TATCTAAAT-T-CGT------------------ATTTGA-TAT---TGAG-T----CGGATGCTCG-------TAT----TATTATGAAT--TACACAACCAGGT-A--ACTAA-A-TTAAACGTAT--TCTGGTACATGTAACAAT--GT-T-TTT-T-ATAATTTA-----------------------TTTTTTTG-------TGA---AGAT-ATgaga
gi|19 : AGCTAGAGTAA---G-C-CTG-GTTATTTTAT-ACT-CAGGTCATCTCGGTAT----TTTAC-------CTTATAATTACAT-------TCAGA-AGCGAA-AA-A------CTCCTAA-TTTCAGAAT-T-CGATC-GAAA-GTTGGACA-CATTTaagagtttttttttttaagttatatattt
gi|14 : aaCAAA-AA--------CTCCTAAATTTCAGAAT-TGCGATC-GAAAAGATGGACA-CATTTGA-TATCATTGAG-T----CGGACACTCACAGTGCGTATGTAGTAGTATGAATAATACAC-GCAGGGT-A--ATTTA-T-TTACAAGTATATTCTTAC-----TGACAAT-----------T-AT--TTTT-----------------------TTTTTTT
gi|13 : tattttacccttataattacaattaatcagacagcgaa--TACACAGCCAGGA-A--ACTAA-A-TTACAAGTAT--ACT-t
gi|13 : GAGT-T-CTT-T-AT--TTTT-----------------------TT--------------AACT-GAAT-GATTT--AAAACCAGGTGT-AACGAATC-------ACAAT-CAAG-TTATACCAACCA---GGCAT-GAAGAAT--TAAAG----GAAACACATTTT--TAAAA--CGTT-CATGTTCTGTTATTTCTGCATGTATaataaaaaaaaaattaaatttattttttgtaaacatataatataagagagttctttatttttttaactgaatgatttaaaaccaggtgtaacgaatcacaatcaagttataccaaccaggcatgaagaattaaaggaaacacatttttaaaacgttcatgttctgttatttctgcatgtat
gi|1 : tacacagccaggaaactaaattacaagtatactaataaaaaaaaaattaaatttattttttgtaaacatataatataagaT--CTTT-----------------------ATTTTTTC-------TAATT-AAATTATTC----AAATCAGGTGT-AATGAATCAATTAAGGTAAT-AAAT-TTAAACCAAACT---GGCAC-GTAGAATGGGGTAG----GGGGCACCTTTT--TACAAGTTGTT-CATTTTCTGTTATTTCTACACATA-------------AATTTTTATATGCAAAATAAGATATAATG------CCC----CGGTCATTGTTAAA-AGTAGGTTTTAAA-GAT-AATTT------------ATTGACCCCATTTTCTCCCAACACTTGA--GATTTCGA-TGTGATTTTCAAGGTGGACTGAC------TGTCCGATTTTGTTTCAAATATCGACATTTAAATGAT-----TTTAC-TGCCCAGACT-CAA-GATCAAATAGACTCATTGTGTTTGAA-CTTGAATATTTCAAAATAGAATGTAAATTTTTTCGCAAGAAACACATGTACATCTATAATATACATTCTATA-TTTTCATTAAT---ATTT--ATCATAAATT-----T-ATGAATAATA--CATTCAA-GTAATA-TTGTCT---C------TTACACTTTTTAA--AAAAT-TTA----AG----AAGTTT--GATC----------G-ATCA-AAATA-------TAACCTGGCGGATCTTCGAT----------------T-TTTCCGGGTTT------CA-GTAC--TTTTC--T--TGGTTGAGTGTAAAAACAACTGTAACACCGTA-ATTGATTATC-AGAAGACAAC-T-TTT-TTAAAAAAGTTTG------ATTATTGCT---CTGTAAAGT-CAATCACAGAGGAA-GATGAATCTATTGCATTAAT-TTTG----TTAGAATCAACATCAAA-GTTTGTCA-GCCT--GTAGAT-TGTAT-CTGA---CTCAAGATCATTTTAC
gi|5 : aagtgatcgtgaatcggacaccctgctctttcctatttgcatgttgatttcttccaactgtttcccctatggtatttggtgtcgcccaaaagagctcgaaattgtgaacttttttactcggatcaccttcttaaattcattcagatgcgataaacacccaacatccaaatttgtttgtaagtcggacacatttgattattgaatcatgcagacacgcaaattattatgaattatacaggcaggtaactttttgcaggtattctgcttacaaacattttataactttgtatgaattttcattaaaatcttaatttaataagataagagggcTTTTA-------TAACT-GAAT-AATTT--AAAACCAGGTGT-AAGGAAT--------------AGAG-TTGTACCTGCTATGAGGCAC-GTGGAATAAGGGAGCTAGGGAACACTTTTT--TACAA--CGTT-CATTTTCCGTTATTTGTTCA--TGTAAAGTTGATTc
gi|3 : aaagtgatcgtaagtcagacaccctactctttccttttcgtatgcagatttattacgactgtttctcctatagtatttagtgctgcttgatagaactagaaattgatgtgtatttcatgctcagatcaccatggtattttacctcataatgcatctagatgcgataaactcccaacaatgaaattcaatcttgattcggacacatttaatattgagttcagacactaggattattatgaattataactttaatacttacaggtatttcatggacaactattttacaatttactttttgtgaatgcgcatggatttttattaaaatcatatttaatatatataagagctagggtacttgaaTT-TAAT-AATCT--AAAACCAGGTGT-AATGAATC-------ACAGT-AAAG-TTGCACCAACCA---GGCAT-GAAAAATGAGGGAG----GCAACACATTTT--TACAA--CGTT-CATTTTCTTTTATTCCTGCATGT--AAAGATGATTCGAATTTCCACATGCAAAATAAGATATGTTAAGTGATCTCCATGCAGACATTGTTAAA-AGTAGGTTTTAAA-AATTAATTTTCTCCCTCATGTATTTACCTCATTTTCTTCCAACGCTTGAAACATCT--A-CATGAAT--CAAGGTGGACTGAGTCCGACTTT--------GTATCAAATAGCGGCA---------T-----TT-AC-TCTTC-GACT-CAA-GATCAAATTGACTCATTGCGTTTGAA-CTTCAATATTTAAAAGTAGAATATAAAGTTTT-CAAAAGAAACATAT---------------GCATTCTATA-TTTACAATGTT-AAATGT--ATCAAATATG-----T-GTAAATAACA--CATTCAA-GTAA-AGT-GTCT---T------TTACACATTTTGC--AAAGT-ATA----GG----AAGTTT--GATC----------G-GTCA-AAATA-------TATCCTGGCGGATCTTCGAT----------------T-TTTTCGGGTTT------CA-GTAC--TTTTG--A--TGAGCGAATGTAAAATAAACTCTAACGTCATT-ATTGAATAGA-AGAAAAAAAC-T-TTTTC----AAAGTTTA------ATTATTACT---CTAAATAGT-CAATCATTGACAAA-GACGAATTTATTGCATTGAA-TTAG----TTTAAATGAACATCGAA-G-TTGTCC-GACT--TTAGAT-CGTGT-CCGA---CTCAAGTTCACTTTAC
gi|4 : ATTGTTAACCAGTAGGTTT-AAACAAT-AATTGCTCCC-TCATATATTGACTTCATTTCTTTCCACGGCTTGAA---TTC--GATGTGATTTTCAA-GTGGATT---------TGT--------GT-CCGAGC-TTTGTA--------ATCATTTTT-ACCTGTCC-GACCTCAACGATCAAATTGACCCATTGCGTTTGAAACTTA--TATTTCAATATAGAATA--AAGTTTTTCAAAAGAAACATAT--------------T-CATTCTATAATTTTCAATAATCGAATTTTAAT-AAATATT-----TTGTAAATAACA--CATTCAAAGTAA-A-T-GTCT---TTTTACACTACACATTTTGC--AAGGT-ATA----AG----AAGTTT--GATC----------G-ATCA-AAACA-------TAACCTGGCGGATCTTCGATCTTTTTTTTCCTTCGATTTTTCCGGGTTTTATTACTA-GTAC--TTTTG--A--TGAGCCAATGTCAAAATAAATCCAACATCATT-ATTGAATATC-AGAAGAAAAC-T-TTT-A----AAAATTTA------ATTATTACT---CGAAATAGT-CAGTCACAGGC---------ATTTATTGCATT-AA-TT----------AATGAACACCAAA-G-TTGTCC-GACT--TTAGAT-CGTGT-CCTA---CTCAAGATCACTTTA
gi|7 : t-CAA-CATCAGATTG-TTCATTGCGTTTTAA-ATTGATTAC--------GG--------GTTTT-CAAAATAAACCTAT-------------ATGCACTCTGCA-TTTCAAAT-AT-CATTTT--A----ATATTATCATC-CTGAATCTGA--TATT--A---AA-A-T-TTCTGGGT------TTAGGAACTTTGA--AAAGT-TCACACCAGTTTTAATTTTTCGATC----------G-ATCATGAATA-------TTACGTGGCGGATCTTTGCTGA--------------TTTTCCCGGTTTT------CGCGTACTATTTTA--A--T
gi|9 : gcggaaatttttatccagtt-----T-GCAAATAATATACATATAA--TAA------------T------TTACACATTTTGC--AAAGT-ATA----AG----AAGTTT--GATC----------A-ATCA-AAATA-------TAGCCTGGCTGATCTTTGAT----------------T-TTTCCGGGTTT------TA-TTAC--TTTTG--A--TTAGCGGATGTAAAAATAACTCAAACGTCGTT-ATTGAATATATATAAGAACAC-T-TTT-C----AAAATTTA------ATTATTACT---CTAAATAGT-CAATCACAGACAAA-GACGAATTTATTGCATTAAATTTTT----TTTAAATGAACATCAAA-G-TTGTCC-GACT--TTAGAT-CGTGT-CCGA---CTCAAGATCACTTTAtgtaatcattgttttttaagttacacaatggaagatggattgattgcatgaatttgatatttttacatcaaagtcgcccgactccagatctt
gi|15 : aa-T-GTCT---T------TTAAACATTTTGGCAAAAGT-ATA----AG----AAGTAC--GGCC----------GATT---AAATA-------TAACATGGTGGATCTTCGAT----------------T-TGTTCGGCTTT------CAGGTAC--TTCTGTTAATTAAGTGATTGCAAAAATAAC-CTAACGTCGTTAATTGAACATA-CGAA-AAAAC-TGTTT--------AGTTTA------ATTATTATT---CTATATa
gi|20 : --AAAGTTGTA----AG----AAGTTT--GATCTCCTCGAATCG-ATTG-AAATATATATTATAGCCTGCCGGATCTTCGAT------------------TTTCCCGGTT----------G-----TTCTG--A--TGGTCAAGTGTAAAAAT
gi|16 : cTCTAACGTCATT-ATTGAATATA-CGAAGAAAAC-T-TTT------AAAGTTTA------ATTATTACT---CTAAACAGT-CAACCACAGACAAA-AACGAGTTTATTGCATTAAT-TTTG----TT--AAT-TA-ATTTAA-G-TTGTTT-AACT--TTAGAT-CGTGT-CCGA---CTCAAGATCACT
gi|18 : AGAAAACAT-TTT-T----AAAGTTTA------ATTATTACT---GTAAATAGT-CAATCACAGACAAA-GACGAATTTATTGCATTAAT-TTTG----TTCAAATGAACACCAAA-G-TTGTCC-GACT--TTAGAT-TGTGT-CCGA---CTCAAGATCACTTTAC
gi|17 : tgAGAAAAA-T-TTT-T-----AAGTTTATTAATTACTATTACTTGGCTAAATAGTACAATCACAGACAAATGACGCATT--TTGC-TT--A-TTTG----TTCCAATGAACACC-AA-G-TTGTCC-GACTAGTTAGAT-TGTGT-CCGAACCCTCAAGATCAACTTc
gi|7 : tgAA-GATGGATTGATTGCAT-GAA-TTTGATATTTT-----TACATCAAA-G-TCGCCC-GACT--CCAGAT-Cta
gi|22 : gcggaaatttttatccagttcaacatcagattgttcattgcgttttaaattgattacgggttttcaaaataaacctatatgcactctgcatttcaaatatcattttaatattatcatcctgaatctgatattaaaatttctgggtttaggaactttgaaaagttcacaccagttttaatttttcgatcgatcatgaatattacgtggcggatctttgctgattttcccggttttcgcgtactattttaattgtaatcattgttttttaagttacacaatggACATCAATTG-TTGTCCGAACT--TTAGATTCGTGTTCCGA---CTCAATGCCACTTTAtt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|23 ): TTTTGCAGTCGATGACGGTCAAAGTTGTAGTCCGACTCATGATTGCGTTTGACTCACGATCACTTTGCCC
Alignments
lowQualScore : 222222222 11111 66666666666666666 111111 1111111 11111111 55555555555555555555555555555555555555555555555555555555555555555555555 111 1111111 1111 33333333 111 2222222 22222222 1111 111 1 1 1 222 3333333 9999999999999 2 444444444444444 1111 1 55555555555555 11 2222222 11 111 111 111111 11 1111 2222222222 1111111 33333333333333333 111111111 11111 111111 11111
lowQualScore : 1 3 222222222 5 77 5 5 3 0 5 66 55 88888 77 5 4 4 0 8888 1 33333333333333333 4 4 4 8888 111111 55 3 55 1 4 4 1 4 0 4 4 4 777 4 9999 4444444 9999 55 1 1 4 888888 0 55 4 44444444 99999999999999999999999999999999999999999999999999999999999999999999999 3 000 8888888 6 2222 77 6 2 55555555 6 6 111 0 6 1 2222222 2 99 99 6 3 3 22222222 0 3 1 1111 0 888 0 1 0 9 0 0 000 4 4444444 2 3 2 1111111111111 2 0 2 3 000000000000000 0000 8 8 8 0 8 8 1 0 22 66 0 44444444444444 3 8 2 11 0000000 8 6 1 6 99 1 33 777 000 666666 777 11 66 0000 66 1111111111 5 6666666 888 55555555555555555 5 777777777 66 88888 5 5 4 4 44444 0 4 111111 777 4 4 66 11111 66 3 3 3 666 3 55 3 4 777 4
lowQualScore : . . ......... . .. . . . . . .. .. ..... .. . . . . .... . ................. . . . .... ...... .. . .. . . . . . . . . . ... . .... ....... .... .. . . . ...... . .. . ........ ....................................................................... . ... ....... . .... .. . . ........ . . ... . . . ....... . .. .. . . . ........ . . . .... . ... . . . . . . ... . ....... . . . ............. . . . . ............... .... . . . . . . . . .. .. . .............. . . . .. ....... . . . . .. . .. ... ... ...... ... .. .. .... .. .......... . ....... ... ................. . ......... .. ..... . . . . ..... . . ...... ... . . .. ..... .. . . . ... . .. . . ... .
lowQualScore : 0 0 999999999 7 99 7 0 0 1 0 99 55 33333 22 3 4 4 1 5555 4 11111111111111111 0 0 0 0000 555555 55 0 55 0 0 0 0 0 1 0 0 4 888 4 4444 4444444 4444 55 3 0 0 000000 5 55 0 33333333 66666666666666666666666666666666666666666666666666666666666666666666666 6 000 6666666 7 1111 99 7 2 55555555 7 7 777 7 7 0 8888888 2 22 22 7 3 3 66666666 7 7 0 3333 7 777 7 0 0 8 0 0 888 2 2222222 0 2 5 8888888888888 5 0 0 2 888888888888888 0000 0 0 0 8 0 2 4 8 88 22 6 66666666666666 2 0 2 00 6666666 0 0 0 7 22 0 33 333 000 444444 999 99 99 6666 99 9999999999 0 2222222 888 00000000000000000 0 444444444 99 00000 7 7 0 0 00000 8 0 555555 000 4 4 88 11111 00 6 6 6 444 6 00 6 0 000 0
consensus : AGTGATCGTGAGTCGGACA---------CCCTGC-TCTT--T-CCTTTTCGTATGCAGATTTCTTCCGACTGTTT-CCCCTA--TGGTATTTGGTGTTGCCCGAAAGAGCTCGA--AA---A-CGTGTACTATTTTNT-GCT-CGGATCACCTTGGTAT----TCTACC-C----ATA--AT--T-CAT-TTAGA-T-GCGAN---AAA------CTCCC--AACAT--CNAAAT-T-CGTTC-GTAA-GTCGGACA-CATTTGA-TAT---TGAG-T----CGGACGCT-------CGTAT----TATTATGAAT--TACACAGCCAGGTAAC-TAAA---TTACAGG--TATTC-TG---C---TGACAA------------TNA-TT-T-TT---------TAAT---------TTNT----------------------T-T---TTTTTA-------TAACT-AAA----TAATTT--AAAACCAGGTGT-AACGAATCA-C------AAT-AAAG-TTGTACCAACC---AGGCACG-AAGAATGAGGG----AGGAAACACATTTT--TACAA--CGTT-CATNTTCTGTTATTTCTGCATGTATAAAG-T-GATTCGAATTTTCANATGCAAAATAAGATATGTTGAGT-ATCTCC-TGCGGACATTGTTAAA-AGTAGGTTTTAAAAAT-AA-TTTTC-CCCTCATATATTGACCTCATTTTCTTCCAACGCTTGAAA-ATCT--ACGTGATTTTCAAGGTGGACTGA-T-C-------TGTGTATCAAATATCGGCA--------AT-----TT-AC-TGTCC-GAC-TCAA-GATCAAATTGACTCATTGCGTTTGAA-CTTGAATATTTCAAAGTAGAATATAAAGTTTTTCAAAAGAAACATAT-------------ATGCATTCTATA-TTTCCAATA--ATN--AA--T-TTATCAAATATTT-GTAAATAACA--CATTCAA-GTAA-A-TGTCT---TTT------ACACATTTTGN--AAAGT--ATA--AG----AAGTTT--GATC----------GATCA-AAATATA-------ACCTGGCGGATCTT---CG-----------------ATT-TTTCCGGGTTT------CA-GTAC--TTTTG--A--TGAGCGAATGTAAAAATAACTCTAACGTCGTT-ATTGAATATA-AGAAGAAAAC-T-TTTT----AAAGTT-TA------ATTATTACT---CTAAATAGT-CAATCACAGACAAA-GACGAATTTATTGCATTAAA-TTTG-----TTTAAATG-AACATCAAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCGA---CTCAAGATC-ACTTTAC
Reference ( family-7343 ) : AGTGATCNTGAGTCGGACA---------CCCTGC-TCTT--T-CCTTTTCGTATGCAGATTTCTTCCGACTGTTT-CCCCTA--TGGTATTTGGTGTTGCCCGAAAGAGCTCGA--AA---A-CGTGTACTATTTTNT-GCT-CGGATCACCTTGGTAT----TCTACC-C----A-A--AC--T-CAT-TTAGA-T-GCGAN---AAA------CTCCC--AACAT--CNAAAT-T-CGNTC-GTAA-GTCGGACA-CATTTGA-TAT---TGAG-T----CGGACACT-------CGTAT----TATTATGAAT--TACACAGCCAGGTANC-TAAA---TTACAGG--TATTC-TG---C---TGACAA------------TAN-TT-C-TT---------TAAT---------TTTT----------------------T-T---TTTTTA-------TAACT-AAA----TAATTT--AAAACCAGGTGT-AACGAATCAAC------AAT-AAAG-TTATACCAACC---AGGCACG-AAGAATGAGGG----AGGGAACACATTTT--TACAA--CGTT-CATTTTCTGTTATTTCTGCACGTATAAAG-T-GATTCGAATTTCCACATGCAAAATAAGATATGNTGAGTGATCCCCATGCGGNCATTGTTAAA-AGTAGGTTTTAAAAAT-AA-TTTCC-CCCTCATGTATTGACCTCATTTTCTTCCAACGCTTGAAA--TTT--ACGTGATTTTCAAGGTGGACTGA-----------TGTGT-TCGAATATCGGCA--------AT-----TT-AC-TGTCC-GAC-TCAA-GATCAAATTGACTCATTGCGTTTGAA-CTTGAATATTTCAAAATAGAATATAAAGTTTTTCAAAAGAAACATAT-------------ATGCATTCTATA-TTTTCAATA--ATN--AA--T-TTATCAAATATTT-GTAAATAACA--CATTCAA-GTAA-A-TGTCT---TTT------ACACATTTTGN--AAAGT--ATA--AG----AAGTTT--GATC----------GATCA-AAATATA-------ACCTGGCGGATCTT---CG-----------------ATT-TTTCCGGGTTT------CA-GTAC--TTTTG--A--TGAGCGAATGTAAAAATAACTCTAACGTCGTT-ATTGAATATA-AGAAGAAAAC-T-TTTT----AAAGTT-TA------ATTATTACT---CTAAATAGT-CAATCACAGACAAA-GACGAATTTATTGCATTAAA-TTTG-----TTTAAATG-AACATCAAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCGA---CTCAAGATC-ACTTTAC
gi|1 : AGTGATCGTGAATCGGACA---------CCCTGC-TCTT--T-CCTATTTGCATGTTGATTTCTTCCAACTGTTT-CCCCTA--TGGTATTTGGTGTCGCCCAAAAGAGCTCGA--AA---T-TGTGAAC--TTTTTT-ACT-CGGATCACCTT-------------CT-T----A-A--AT--T-CAT-TCAGA-T-GCGAT---AAA------CACCC--AACAT--CCAAAT-T-TGTTT-GTAA-GTCGGACA-CATTTGATTAT---TGAA-TCATGCAGACACG-------CAAAT----TATTATGAAT--TATACAGGCAGGTAAC-T-TT---TTGCAGG--TATTC-TG---C---TTACAA------------ACA-TT-T-TA---------TAAC---------TTTG----------------------TATGAATTTTCA-------T---T-AAAATCTTAATTT--AA
gi|1 : aT---------CTTT----------------------A-T---TTTTTC-------TAATT-AAA----TTATTC--AAA-TCAGGTGT-AATGAATCAATTAAGGTAAT-AAAT-TTAAACCAAAC---TGGCACG-TAGAATGGGGT----AGGGGGCACCTTTT--TACAAGTTGTT-CATTTTCTGTTATTTCTACACATA--------------AATTTTTATATGCAAAATAAGATATAATG-------CCC---CGGTCATTGTTAAA-AGTAGGTTTTAAAGAT-AA-TTT------------ATTGACCCCATTTTCTCCCAACACTTGAGA--TTTCGATGTGATTTTCAAGGTGGACTGACTGTCCGATTTTGT-T-TCAAATATCGACATTTAAATGAT-----TTTAC-TGCCCAGAC-TCAA-GATCAAATAGACTCATTGTGTTTGAA-CTTGAATATTTCAAAATAGAATGTAAATTTTTTCGCAAGAAACACATGTACATCTATAATATACATTCTATA-TTTTCATTA--AT----A--T-TTATCATAAATTT-ATGAATAATA--CATTCAA-GTAATATTGTCT---CTT------ACACTTTTTAA--AAAAT--TTA--AG----AAGTTT--GATC----------GATCA-AAATATA-------ACCTGGCGGATCTT---CG-----------------ATT-TTTCCGGGTTT------CA-GTAC--TTTTC--T--TGGTTGAGTGTAAAAACAACTGTAACACCGTA-ATTGATTATC-AGAAGACAAC-T-TTTTTAAAAAAGTT-TG------ATTATTGCT---CTGTAAAGT-CAATCACAGAGGAA-GATGAATCTATTGCATTAAT-TTTG-----TTAGAATC-AACATCAAA-GTTTGT---CAGC-CT--GTAGAT-TGTAT-CTGA---CTCAAGATC-ATTTTACtaagataagagggctctttattttttctaattaaattattcaaatcaggtgtaatgaatcaattaaggtaataaatttaaaccaaactggcacgtagaatggggtagggggcacctttttacaagttgttcattttctgttatttctacacataaatttttatatgcaaaataagatataatgccccggtcattgttaaaagtaggttttaaagataatttattgaccccattttctcccaacacttgagatttcgatgtgattttcaaggtggactgactgtccgattttgtttcaaatatcgacatttaaatgattttactgcccagactcaagatcaaatagactcattgtgtttgaacttgaatatttcaaaatagaatgtaaattttttcgcaagaaacacatgtacatctataatatacattctatattttcattaatatttatcataaatttatgaataatacattcaagtaatattgtctcttacactttttaaaaaatttaagaagtttgatcgatcaaaatataacctggcggatcttcgatttttccgggtttcagtacttttcttggttgagtgtaaaaacaactgtaacaccgtaattgattatcagaagacaacttttttaaaaaagtttgattattgctctgtaaagtcaatcacagaggaagatgaatctattgcattaattttgttagaatcaacatcaaagtttgtcagcctgtagattgtatctgactcaagatcattttacc
gi|10 : aagtgatcgtgaatcggacaccctgctctttcctatttgcatgttgatttcttccaactgtttcccctatggtatttggtgtcgcccaaaagagctcgaaattgtgaacttttttactcggatcaccttcttaaattcattcagatgcgataaacacccaacatccaaatttgtttgtaagtcggacacatttgattattgaatcatgcagacacgcaaattattatgaattatacaggcaggtaactttttgcaggtattctgcttacaaacattttataactttgtatgaattttcattaaaatcttaatttaataagataagagggcAGTGATCTTGAGCCGAA-A---------CCCTTC-ACTC--T-CCCTTTCGTATTCAGATTATTTCCGACTGT---CTCCTG--AGGTATTTGGTGTTACTCGAAAGAGCTCGA--AAT--ATTGTGTACTATTATCT-GCT-CGGATCAC--TG----------TGC--------------------------A-T-GCGAC---AAA------CTCCC--AACAT--CGAAAT-T-CGGTC-GTAC-GTCGGACA-CATTC-A-TTT---TCAG-T----CGGACACT-------GATAT------TTATAA---------AGTCGGGTCGCATATA---TCGCTGG--TATTC-TA---C---TGATAA------------CAA-TT-T-CA---------TAAT---------TTAC----------------------T-T---TTTGTA--------AACc
gi|11 : aTTGGTGTTGCCCGAAAGAGCACGA--AA---A-CGTGCACTATTTTTT-GCC-CGGACCACCTTGGTATATATTCTACC-CC---ATA--AT--T-CAT-TTAGA-T-GCAAA---AAAAAAAAACTCCC--AATAT--CTAAAT-T-CGT------------------ATTTGA-TAT---TGAG-T----CGGATGCT-------CGTAT----TATTATGAAT--TACACAACCAGGTAAC-TAAA---TTAAACG--TATTC-TGGTACATGTAACAA------------TGT-TT-T-TTA--------TAAT---------TTAT----------------------T-T---TTTTacgt
gi|12 : GATTTTTTTCGGCTATTT-CCCCTACATGGTATTTAGTGTTGCCGGATAGAGCTCGA--AA---T-TGTATACTATTTTAT-GCT-CAGATCACACTGGCAT----TTTACCTC----ATA--AT--G-CAT-CTAGA-T-GCGAT---CAA------CTCTCTCAACAT--CAAAAT-T-CGTTC-GCAC-GTCGGCCA-CACTTGA-TTT---TGAG-T----CATACACG-------CGTAT----TATTATGAAA--TATACAGGTAGGTAAC-T-TA---TTGCAGG--TGTTT-TT---C---TGACAGC-----------TA---T-C-TTA--------TAAT---------TTAC----------------------T-T---TTTgtgaagatataagagtttttttttttaagttatatattt
gi|13 : --TACACAGCCAGGAAAC-TAAA---TTACAAG--TATAC-TA---A---TAAAAAAAAAATTAAATTTAT-TT-T-TTGTAAACATATAATATAAGAGAGTTCT----------------------T-TA--TTTTTT-------TAACT-GAA----TGATTT--AAAACCAGGTGT-AACGAATCA-C------AAT-CAAG-TTATACCAACC---AGGCATG-AAGAATTAA------AGGAAACACATTTT--TAAAA--CGTT-CATGTTCTGTTATTTCTGCATGTATgaga
gi|14 : TAT----TTTACC-CTTATA-ATTACAAT-TAA-TCAGA-CAGCGAACAAAAA------CTCCT--AA-ATTTCAGAAT-TGCGATC-GAAAAGATGGACA-CATTTGA-TATCATTGAG-T----CGGACACTCACAGTGCGTATGTAGTAGTATGAATAATACAC-GCAGGGTAAT-TTAT---TTACAAGTATATTCTTA---C---TGACAA------------TTA-TT-T-TT---------T--T---------TTTT----------------------T-T---
gi|15 : -TGTCT---TTT------AAACATTTTGGCAAAAGT--ATA--AG----AAGTAC--GGCC----------GATTA-AA-TATA-------ACATGGTGGATCTT---CG-----------------ATT-TGTTCGGCTTT------CAGGTAC--TTCTGTTAATTAAGTGATTGCAAAAATAAC-CTAACGTCGTTAATTGAACATA-CGAA-AAAAC-T-GTTT------AGTT-TA------ATTATTATT---CTATAT
gi|16 : TCTAACGTCATT-ATTGAATATA-CGAAGAAAAC-T-TTT-----AAAGTT-TA------ATTATTACT---CTAAACAGT-CAACCACAGACAAA-AACGAGTTTATTGCATTAAT-TTTG-----TT--AATT-A--ATTTAA-G-TTGT---TTAA-CT--TTAGAT-CGTGT-CCGA---CTCAAGATC-ACTT
gi|17 : AGAAAAA-T-TTTT----AA-GTT-TATTAATTACTATTACTTGGCTAAATAGTACAATCACAGACAAATGACGCATTT--TGC-TTA---TTTG-----TTCCAATG-AACACC-AA-G-TTGT---CCGA-CTAGTTAGAT-TGTGT-CCGAACCCTCAAGATCAACTTTA
gi|18 : tgAGAAAACAT-TTTT----AAAGTT-TA------ATTATTACT---GTAAATAGT-CAATCACAGACAAA-GACGAATTTATTGCATTAAT-TTTG-----TTCAAATG-AACACCAAA-G-TTGT---CCGA-CT--TTAGAT-TGTGT-CCGA---CTCAAGATC-ACTTTAC
gi|19 : tgAAAGCTAGAGTAA---G-CCTG-GTTATTTTAT-ACT-CAGGTCATCTCGGTAT----TTTACC-TT---ATA--AT--TACAT-TCAGA-A-GCGAA---AAA------CTCCT--AATTT--CAGAAT-T-CGATC-GAAA-GTTGGACA-CATTTc
gi|2 : AGTGATCGTGAGTCGGACA---------CCCTAC-CCTT--T-CCTTTTCGTATACAGATTTCTTCCGACTGTTT-TCCCTA--TAGTAATTGGTGTTGCCCGAATGAGCTCGA--AA---A-CGTGTACTATTTTTT-GCT-CGGATCACCTTGGTAT----TCTACT---------------T-CAT-TTAGA-T-GCAAT---AAT------CTCCC--AATAT--CTAAAT-T-CGTTC-GTAA-GTCGGACA-CATTTGA-TAC---TGAG-T----CGGACGCT-------TATAT----TATTATCAAT--TACACAGCCAGGTATT-TAAA---TTACAAG--TATTC-TG---T---TGACAA------------TGGGTT-C-TT---------TGAT---------TTTT----------------------T-T---TTTTTA-------TAATT-AAA----TATTCT--AAAACCAGATAC-AATGAATCG-C------AAT-AAAG-TTGTACCAACC---AGACATA-AAGAATGATGG----AGGAAACACATTTT--TACAA--CGTT-CATATTCTGTTATTTCTGCATGTGTAAAG-TTGATTCGAATTTTCAAATGCAAAATAAGTTATGTTGAGTTATCTCATTACAGACATTGTTAAA-AGTAGGTTT-AAAAAT-AACTTTTC-CCCTCATATATTGACCTCATTTTCTTCCAACGTTTAAAAGATAT--GTGTGATTTTCAATGTGGACTG------------TGTGTATCAAATATCCACA--------AT-----TT-AC-TGCCC-GAC-ACAA-GATCAAATTGACTAATTGCGTTTGAA-CTTAATTATTTCAAAGTGGAATATAAAGTTGT-CAAAAGAAACATAT-------------ATGCATTCTTTA-TTTCCAATG--ATG--AA--T-TTATCAAATATTT-GTAAATAACA--CATTCAA-GTAA-A-TGTCT---TCT------ACACATTTTGT--AAAGT--GTA--AG----AAGTTT--GATC----------GTTCA-AAATATA-------ACCTGGCGGATCTT---CG-----------------ATTCTTTTCGGGTTT------CA-GTAC--TTTTG--A--TGAGCGAATGTAAAAATAACTCTAATGTCGTT-ATTGAATATA-AGAAGAAAAC-T-TTTC----GAAGTT-CA------ATTATTACT---CTAAATAGT-CAATCACAGACAAA-GACGAATTCATTGCATTAAA-TTTG-----TTTAAATG-TACATCAAA-A-TTGT---CCAA-TT--TCAGAT-CGTGT-CCGA---CTTAAGATC-ACCTTAC
gi|20 : --AAAGTT-GTA--AG----AAGTTT--GATCTCCTCGAATCGATTG-AAATATATATTATAGCCTGCCGGATCTT---CG-----------------ATT-TTCCC-GGTT----------G-----TTCTG--A--TGGTCAAGTGTAAAAATt
gi|21 : cGAGTCGGAAATTAGGAAGCCCCAGT-TCTT--T-TCTTTTC-T-TGCAGATGTTTTCCTAATG-------CCA--TGGTATTTGATGTTGCCCGAGAGAGATCGA--AA---
gi|22 : ggAATGGAACATCAATTG-TTGT---CCGAACT--TTAGATTCGTGTTCCGA---CTCAATGCC-ACTTTAtt
gi|23 : ttatgcATG-ACGGTCAAA-G-TTGTAGTCCGA-CT--CATGAT-TGCGT-TTGA---CTCACGATC-ACTTTGCgcacta
gi|3 : ttttgcagtcgAA----TAATCT--AAAACCAGGTGT-AATGAATCA-C------AGT-AAAG-TTGCACCAACC---AGGCATG-AAAAATGAGGG----AGGCAACACATTTT--TACAA--CGTT-CATTTTCTTTTATTCCTGCATGTA-AAGA-T-GATTCGAATTTCCACATGCAAAATAAGATATGTTAAGTGATCTCCATGCAGACATTGTTAAA-AGTAGGTTTTAAAAATTAA-TTTTCTCCCTCATGTATTTACCTCATTTTCTTCCAACGCTTGAAACATCT--ACATGAAT--CAAGGTGGACTGAGTCCGAC----TTTGTATCAAATAGCGGCA---------T-----TT-AC-TCTTC-GAC-TCAA-GATCAAATTGACTCATTGCGTTTGAA-CTTCAATATTTAAAAGTAGAATATAAAGTTTT-CAAAAGAAACATAT---------------GCATTCTATA-TTTACAATG--TTA--AA--T-GTATCAAATATGT-GTAAATAACA--CATTCAA-GTAA-AGTGTCT---TTT------ACACATTTTGC--AAAGT--ATA--GG----AAGTTT--GATC----------GGTCA-AAATATA-------TCCTGGCGGATCTT---CG-----------------ATT-TTTTCGGGTTT------CA-GTAC--TTTTG--A--TGAGCGAATGTAAAATAAACTCTAACGTCATT-ATTGAATAGA-AGAAAAAAAC-T-TTTTC---AAAGTT-TA------ATTATTACT---CTAAATAGT-CAATCATTGACAAA-GACGAATTTATTGCATTGAA-TTAG-----TTTAAATG-AACATCGAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCGA---CTCAAGTTC-ACTTTACcc
gi|4 : tttATTGTTAACCAGTAGGTTTAAACAAT-AA-TTGCT-CCCTCATATATTGACTTCATTTCTTTCCACGGCTTGAAT--TCG--ATGTGATTTTCAAG-TGGATT-------------TGTGT-CCGAGC-TTTGTA--------ATCATTTTT-ACCTGTCC-GACCTCAACGATCAAATTGACCCATTGCGTTTGAAACTT--ATATTTCAATATAGAATA--AAGTTTTTCAAAAGAAACATAT--------------T-CATTCTATAATTTTCAATA--ATC--GAATT-TTAATAAATATTTTGTAAATAACA--CATTCAAAGTAA-A-TGTCT---TTTTACACTACACATTTTGC--AAGGT--ATA--AG----AAGTTT--GATC----------GATCA-AAACATA-------ACCTGGCGGATCTT---CGATCTTTTTTTTCCTTCGATT-TTTCCGGGTTTTATTACTA-GTAC--TTTTG--A--TGAGCCAATGTCAAAATAAATCCAACATCATT-ATTGAATATC-AGAAGAAAAC-T-TTTA----AAAATT-TA------ATTATTACT---CGAAATAGT-CAGTCACAGGC---------ATTTATTGCATT-AA-TT-----------AATG-AACACCAAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCTA---CTCAAGATC-ACTTTA
gi|5 : tAGTGATCGTAAGTCAGACA---------CCCTAC-TCTT--T-CCTTTTCGTATGCAGATTTATTACGACTGTTT-CTCCTA--TAGTATTTAGTGCTGCTTGATAGAACTAGA--AATTGA-TGTG---TATTTCAT-GCT-CAGATCACCATGGTAT----TTTACCTC----ATA--AT--G-CAT-CTAGA-T-GCGAT---AAA------CTCCC--AACAA--TGAAAT-T-CAATC-TTGA-TTCGGACA-CATTTAA-TAT---TGAGTT----CAGACACT-------AGGAT----TATTATGAAT--TATA---------ACT-TTAATACTTACAGG--TATTT-CA---T---GGACAA------------CTA-TT-T-TA---------CAAT---------TTAC----------------------T-T---TTT
gi|5 : aaTTTTA-------TAACT-GAA----TAATTT--AAAACCAGGTGT-AAGG-------------AAT-AGAG-TTGTACCTGCTATGAGGCACG-TGGAATAAGGGAGCTAGGGAACACTTTTT--TACAA--CGTT-CATTTTCCGTTATTTGTTCATG--TAAAGTT-GATTgtgaatgcgcatggatttttattaaaatcatatttaatatatataagagctagggtacttgaattttataactgaataatttaaaaccaggtgtaaggaatagagttgtacctgctatgaggcacgtggaataagggagctagggaacacttttttacaacgttcattttccgttatttgttcatgtaaagttgatt
gi|6 : aaagtgatcgtaagtcagacaccctactctttccttttcgtatgcagatttattacgactgtttctcctatagtatttagtgctgcttgatagaactagaaattgatgtgtatttcatgctcagatcaccatggtattttacctcataatgcatctagatgcgataaactcccaacaatgaaattcaatcttgattcggacacatttaatattgagttcagacactaggattattatgaattataactttaatacttacaggtatttcatggacaactattttacaatttactttttgtgaatgcgcatggatttttattaaaatcatatttaatatatataagagctagggtacttgaaTCGTGAGTCGGACA---------CCCTGCCTCTTATTGCCCTTTCGT-T-CAGATTTCATCCGACTGTTCGCCCCTA--TAGTATTTGGTGTTGCCCGAAAGAGCTCGA--AA---ATTGTGT-CTCTTTT-T-GCTCCGGATC-CCTTGGTAT----TCTACC-TCA--A-A--AT--T-CATCTTAGACT-CCCAA---AAA------CTCCC--AATAT--CT--ATCT-CGTTCGGTAA-GTC-GACGCCATTTGA-TAT---TG-G-T----CGGACACT-------CATAT----T-TTATGAAT--TACACAGCC-GGAAAC-TAAA---TTACAAG--TATAC-TA---A---TAAAAA------------AAA-TTACATT---------TATT---------TTTTGTAAACATCATAATATAGAGAGT-T---TCTTTATTTTTTTTAACTGAAA----TGATTTAAAAAACCAGGTGTAAACGAATCAAC------AATCAAAGTTTATA-CAACC---AGGCATGAAAGGATTA--A----AGGAAACACATTTTTCTAAAA--CGTTCCATGTTCTGTTATTTCTGCATGTA
gi|7 : CGGAA--------AT-----TT--T-TATCC-AGT-TCAA-CATCAGATTG-TTCATTGCGTTTTAA-ATTGATTAC-----------------GGGTTTTCAAAATAAACCTAT-------------ATGCACTCTGCA-TTTCAAATATCATTTTAA--TATTATCA-----TC-CTGAATCTGA--TATT--A---AA-A-TTTCTGGGTTT------AGGAACTTTGA--AAAGTTCACACCAGTTTTAATTTTTCGATC----------GATCATGAATATT-------ACGTGGCGGATCTTTGCTG-----------------ATT-TTCCCGGTTTT------CGCGTACTATTTTA--A--T
gi|7 : gAC-TATTTT----AA--TTGTA------ATCATTGTT---TTTTA-AGT-TA--CACAATGGAA-GATGGATTGATTGCAT-GAA-TTTGATATTTTTA-------CATCAAA-G-TCGC---CCGA-CT--CCAGAT-Ctgtaatcattgttttttaagttacacaatggaagatggattgattgcatgaatttgatatttttacatcaaagtcgcccgactccagatctt
gi|8 : gcggaaatttttatccagttcaacatcagattgttcattgcgttttaaattgattacgggttttcaaaataaacctatatgcactctgcatttcaaatatcattttaatattatcatcctgaatctgatattaaaatttctgggtttaggaactttgaaaagttcacaccagttttaatttttcgatcgatcatgaatattacgtggcggatctttgctgattttcccggttttcgcgtAGTGATCGTGAGTCGGATA---------CCCAGC-TCTT--T-CCTTTTCATATGCATATTTCTTCCGACTGTTT-TCCCTA--TAGTATTTGGTGTTGCCCGAAAGAATTCGA--AA---A-CGTGTACTATTTTTTTGCT-CGGATCACTTTGGTAT----TCTACCTC----ATA--AT--T-CAT-TTAGA-T-GCAAT---GAA------CTCCC--AATAT--CTAAAT-T-CGTTC-GTAA-GTCAGACA-CATTTGA-TGT---TGAG-T----CGGACGCT-------CATAT----CATTATGAAT--TACACAGCCATGTAAC-TAAA---TTACAAG--TATTC-TG---T---TGACAAT-----------TAT-TT-T-TA---------TAAT---------TTAT----------------------T-T---TTTtt
gi|9 : aT-GCAAATAATATACATATAA--TAA-----------TTT------ACACATTTTGC--AAAGT--ATA--AG----AAGTTT--GATC----------AATCA-AAATATA-------GCCTGGCTGATCTT---TG-----------------ATT-TTTCCGGGTTT------TA-TTAC--TTTTG--A--TTAGCGGATGTAAAAATAACTCAAACGTCGTT-ATTGAATATATATAAGAACAC-T-TTTC----AAAATT-TA------ATTATTACT---CTAAATAGT-CAATCACAGACAAA-GACGAATTTATTGCATTAAATTTTT-----TTTAAATG-AACATCAAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCGA---CTCAAGATC-ACTTTAgtgaacatataagataa
Alignments
lowQualScore : 222222222 1111111 33333 111111 1111111 111111111 5555555555555555555555555555555555555555555555555555555 111 1111 2222222 111 2222222 22222222 3333333 33333 1 1 1 111 3333 7777777777777 444444444444444 1111 1 55555555555555 11 2222222 11 111 111 111111 11 1111 2222222222 1111111 33333333333333333 111111111 11111 111111 11111
lowQualScore : 3 222222222 5 77 5 5 3 0 5 66 55 7777777 77 5 4 4 0 8888 1 11111 0 8 4 8888 4 4 8888 111111 55 3 55 1 4 4 1 44 4 4 4 777 4 9999 0 4444444 9999 55 0 1 99 66666 0 55 888888888 5555555555555555555555555555555555555555555555555555555 1 555 66 6 2222 99 88 8888888 6 6 111 0 6 1 2222222 99 99 6 1 22222222 1 3333333 33333 0 0 9 0 0 777 0 0000 3 2 3 2 5555555555555 9 3 000000000000000 0000 8 8 8 0 8 8 1 0 22 66 0 44444444444444 3 8 1 11 0000000 8 6 1 6 99 1 33 777 000 666666 777 11 66 0000 66 1111111111 5 6666666 888 55555555555555555 5 777777777 66 88888 5 5 4 4 44444 0 4 111111 777 4 4 66 11111 66 3 3 3 666 3 55 3 4 777 4
lowQualScore : . ......... . .. . . . . . .. .. ....... .. . . . . .... . ..... . . . .... . . .... ...... .. . .. . . . . .. . . . ... . .... . ....... .... .. . . .. ..... . .. ......... ....................................................... . ... .. . .... .. .. ....... . . ... . . . ....... .. .. . . ........ . ....... ..... . . . . . ... . .... . . . . ............. . . ............... .... . . . . . . . . .. .. . .............. . . . .. ....... . . . . .. . .. ... ... ...... ... .. .. .... .. .......... . ....... ... ................. . ......... .. ..... . . . . ..... . . ...... ... . . .. ..... .. . . . ... . .. . . ... .
lowQualScore : 0 999999999 7 99 7 0 0 1 0 99 55 2222222 22 3 4 4 1 5555 4 11111 8 0 0 5555 0 0 0000 555555 55 0 55 0 0 0 2 11 0 0 4 888 4 4444 7 4444444 4444 55 7 3 55 44444 5 55 333333333 1111111111111111111111111111111111111111111111111111111 0 000 44 7 1111 22 88 3333333 7 7 777 7 7 0 8888888 22 22 7 0 66666666 0 0000000 00000 7 0 8 0 0 222 8 8888 0 0 2 5 8888888888888 8 2 888888888888888 0000 0 0 0 8 0 2 4 8 44 22 6 66666666666666 2 0 4 00 6666666 0 0 0 7 22 0 33 333 000 444444 999 99 99 6666 99 9999999999 0 2222222 888 00000000000000000 0 444444444 99 00000 7 7 0 0 00000 8 0 555555 000 4 4 88 11111 00 6 6 6 444 6 00 6 0 000 0
consensus : AGTGATCGTGAGTCGGACA---------CCCTGC-TCTT--T-CCTTTTCGTATGCAGATTTCTTCCGACTGTTT-CCCCTA--TGGTATTTGGTGTTGCCCGAAAGAGCTCGA--AA---A-C-GTGTACTATTTTNT-GCTC-GGATCACCTTGGTAT----TCTACCTC--ATAATT-CAT-TTA----GA-T-GCGAN---AAA------CTCCC--AACAT--CNAAAT-T-CGTTCG-TAA-GTCGGACAC-ATTTGA-TAT---TGAG-T----CGGACGCTC-------GTAT----TATTATGAAT--TACACAGCCAGGTAAC--TAA-A-TTACAGGTAT--TCT-G---C---TGACAA-----------TTA-TTTTT-T--------------------AA-T---------TTATTT---TTTTTATAACT-AAA----TAATTTAAAA--CCAGGTGTAA-CGAATCA-------CAAT-AAAGTT-GTACCAACC---AGGCACGAA-GAATGAGGG----AGGAAACACATTTTT--ACAA--CGTTC-ATNTTCTGTTATTTCTGCATGTATAAAG-T-GATTCGAATTTTCANATGCAAAATAAGATATGTTGAGT-ATCTC-C-TGCGGACATTGTTAAA-AGTAGGTTTTAAAAAT-AA-TTTTC-CCCTCATATATTGACCTCATTTTCTTCCAACGCTTGAAA-AT-CNACGTGATTTTCAAGGTGGACTGA---TCCGACTTTGTATCAAATATCGGCA--------AT-----TT-AC-TGTCC-GAC-TCAA-GATCAAATTGACTCATTGCGTTTGAA-CTTGAATATTTCAAAGTAGAATATAAAGTTTTTCAAAAGAAACATAT-------------ATGCATTCTATA-TTTCCAATA--ATN--AA--T-TTATCAAATATTT-GTAAATAACA--CATTCAA-GTAA-A-TGTCT---TTT------ACACATTTTGN--AAAGT--ATA--AG----AAGTTT--GATC----------GATCA-AAATATA-------ACCTGGCGGATCTT---CG-----------------ATT-TTTCCGGGTTT------CA-GTAC--TTTTG--A--TGAGCGAATGTAAAAATAACTCTAACGTCGTT-ATTGAATATA-AGAAGAAAAC-T-TTTT----AAAGTT-TA------ATTATTACT---CTAAATAGT-CAATCACAGACAAA-GACGAATTTATTGCATTAAA-TTTG-----TTTAAATG-AACATCAAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCGA---CTCAAGATC-ACTTTAC
Reference ( family-7343 ) : AGTGATCGTGAGTCGGACA---------CCCTGC-TCTT--T-CCTTTTCGTATGCAGATTTCTTCCGACTGTTT-CCCCTA--TGGTATTTGGTGTTGCCCGAAAGAGCTCGA--AA---A-C-GTGTACTATTTTNT-GCTC-GGATCACCTTGGTAT----TCTACC-C--ATAATT-CAT-TTA----GA-T-GCGAN---AAA------CTCCC--AACAT--CNAAAT-T-CGTTCG-TAA-GTCGGACAC-ATTTGA-TAT---TGAG-T----CGGACGCTC-------GTAT----TATTATGAAT--TACACAGCCAGGTAAC--TAA-A-TTACAGGTAT--TCT-G---C---TGACAA-----------TNA-TTTTT-T--------------------AA-T---------TTNTTT---TTTTTATAACT-AAA----TAATTTAAAA--CCAGGTGTAA-CGAATCA-------CAAT-AAAGTT-GTACCAACC---AGGCACGAA-GAATGAGGG----AGGAAACACATTTTT--ACAA--CGTTC-ATNTTCTGTTATTTCTGCATGTATAAAG-T-GATTCGAATTTTCANATGCAAAATAAGATATGTTGAGT-ATCTC-C-TGCGGACATTGTTAAA-AGTAGGTTTTAAAAAT-AA-TTTTC-CCCTCATATATTGACCTCATTTTCTTCCAACGCTTGAAA-AT-CTACGTGATTTTCAAGGTGGACTGA---TCTG----TGTATCAAATATCGGCA--------AT-----TT-AC-TGTCC-GAC-TCAA-GATCAAATTGACTCATTGCGTTTGAA-CTTGAATATTTCAAAGTAGAATATAAAGTTTTTCAAAAGAAACATAT-------------ATGCATTCTATA-TTTCCAATA--ATN--AA--T-TTATCAAATATTT-GTAAATAACA--CATTCAA-GTAA-A-TGTCT---TTT------ACACATTTTGN--AAAGT--ATA--AG----AAGTTT--GATC----------GATCA-AAATATA-------ACCTGGCGGATCTT---CG-----------------ATT-TTTCCGGGTTT------CA-GTAC--TTTTG--A--TGAGCGAATGTAAAAATAACTCTAACGTCGTT-ATTGAATATA-AGAAGAAAAC-T-TTTT----AAAGTT-TA------ATTATTACT---CTAAATAGT-CAATCACAGACAAA-GACGAATTTATTGCATTAAA-TTTG-----TTTAAATG-AACATCAAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCGA---CTCAAGATC-ACTTTAC
gi|1 : AGTGATCGTGAATCGGACA---------CCCTGC-TCTT--T-CCTATTTGCATGTTGATTTCTTCCAACTGTTT-CCCCTA--TGGTATTTGGTGTCGCCCAAAAGAGCTCGA--AA---T-T-GTGAAC--TTTTTT-ACTC-GGATCACCTTCTTA-----------------AATT-CAT-TCA----GA-T-GCGAT---AAA------CACCC--AACAT--CCAAAT-T-TGTTTG-TAA-GTCGGACAC-ATTTGATTAT---TGAA-TCATGCAGACACGC-------AAAT----TATTATGAAT--TATACAGGCAGGTAAC--T-T-T-TTGCAGGTAT--TCT-G---C---TTACAA-----------ACA-TTTTA-T--------------------AACT---------TTGTATGAATTTTCAT---T-AAAATCTTAATTTAA
gi|1 : a-T---------TTATTT---TTTCTA--ATT-AAA----TTATTCAAA---TCAGGTGTAA-TGAATCAATTAAGGTAAT-AAATTT-AAACCAAAC---TGGCACGTA-GAATGGGGT----AGGGGGCACCTTTTT--ACAAGTTGTTC-ATTTTCTGTTATTTCTACACATA--------------AATTTTTATATGCAAAATAAGATATA-------ATGCC-C---CGGTCATTGTTAAA-AGTAGGTTTTAAAGAT-AA-TTT------------ATTGACCCCATTTTCTCCCAACACTTGAGA-TTTCGATGTGATTTTCAAGGTGGACTGACTGTCCGATTTTGTTTCAAATATCGACATTTAAATGAT-----TTTAC-TGCCCAGAC-TCAA-GATCAAATAGACTCATTGTGTTTGAA-CTTGAATATTTCAAAATAGAATGTAAATTTTTTCGCAAGAAACACATGTACATCTATAATATACATTCTATA-TTTTCATTA--AT----A--T-TTATCATAAATTT-ATGAATAATA--CATTCAA-GTAATATTGTCT---CTT------ACACTTTTTAA--AAAAT--TTA--AG----AAGTTT--GATC----------GATCA-AAATATA-------ACCTGGCGGATCTT---CG-----------------ATT-TTTCCGGGTTT------CA-GTAC--TTTTC--T--TGGTTGAGTGTAAAAACAACTGTAACACCGTA-ATTGATTATC-AGAAGACAAC-T-TTTTTAAAAAAGTT-TG------ATTATTGCT---CTGTAAAGT-CAATCACAGAGGAA-GATGAATCTATTGCATTAAT-TTTG-----TTAGAATC-AACATCAAA-GTTTGT---CAGC-CT--GTAGAT-TGTAT-CTGA---CTCAAGATC-ATTTTACtaagataagagggctctttattttttctaattaaattattcaaatcaggtgtaatgaatcaattaaggtaataaatttaaaccaaactggcacgtagaatggggtagggggcacctttttacaagttgttcattttctgttatttctacacataaatttttatatgcaaaataagatataatgccccggtcattgttaaaagtaggttttaaagataatttattgaccccattttctcccaacacttgagatttcgatgtgattttcaaggtggactgactgtccgattttgtttcaaatatcgacatttaaatgattttactgcccagactcaagatcaaatagactcattgtgtttgaacttgaatatttcaaaatagaatgtaaattttttcgcaagaaacacatgtacatctataatatacattctatattttcattaatatttatcataaatttatgaataatacattcaagtaatattgtctcttacactttttaaaaaatttaagaagtttgatcgatcaaaatataacctggcggatcttcgatttttccgggtttcagtacttttcttggttgagtgtaaaaacaactgtaacaccgtaattgattatcagaagacaacttttttaaaaaagtttgattattgctctgtaaagtcaatcacagaggaagatgaatctattgcattaattttgttagaatcaacatcaaagtttgtcagcctgtagattgtatctgactcaagatcattttacc
gi|10 : aagtgatcgtgaatcggacaccctgctctttcctatttgcatgttgatttcttccaactgtttcccctatggtatttggtgtcgcccaaaagagctcgaaattgtgaacttttttactcggatcaccttcttaaattcattcagatgcgataaacacccaacatccaaatttgtttgtaagtcggacacatttgattattgaatcatgcagacacgcaaattattatgaattatacaggcaggtaactttttgcaggtattctgcttacaaacattttataactttgtatgaattttcattaaaatcttaatttaataagataagagggctcAGTGATCTTGAGCCGAA-A---------CCCTTC-ACTC--T-CCCTTTCGTATTCAGATTATTTCCGACTGT---CTCCTG--AGGTATTTGGTGTTACTCGAAAGAGCTCGA--AAT--ATT-GTGTACTATTATCT-GCTC-GGATCAC--TG----------TGC------------------------A-T-GCGAC---AAA------CTCCC--AACAT--CGAAAT-T-CGGTCG-TAC-GTCGGACAC-ATTC-A-TTT---TCAG-T----CGGACACTG-------ATAT------TTATAA---------AGTCGGGTCGCA-TAT-A-TCGCTGGTAT--TCT-A---C---TGATAA-----------CAA-TTTCA-T--------------------AA-T---------TTACTT---TTTGTA-AACc
gi|11 : aTTGGTGTTGCCCGAAAGAGCACGA--AA---A-C-GTGCACTATTTTTT-GCCC-GGACCACCTTGGTATATATTCTACC-CC-ATAATT-CAT-TTA----GA-T-GCAAA---AAAAAAAAACTCCC--AATAT--CTAAAT-T-CGT------------------ATTTGA-TAT---TGAG-T----CGGATGCTC-------GTAT----TATTATGAAT--TACACAACCAGGTAAC--TAA-A-TTAAACGTAT--TCT-GGTACATGTAACAA-----------TGT-TTTTTAT--------------------AA-T---------TTATTT---TTTTacgt
gi|12 : GATTTTTTTCGGCTATTT-CCCCTACATGGTATTTAGTGTTGCCGGATAGAGCTCGA--AA---T-T-GTATACTATTTTAT-GCTC-AGATCACACTGGCAT----TTTACCTC--ATAATG-CAT-CTA----GA-T-GCGAT---CAA------CTCTCTCAACAT--CAAAAT-T-CGTTCG-CAC-GTCGGCCAC-ACTTGA-TTT---TGAG-T----CATACACGC-------GTAT----TATTATGAAA--TATACAGGTAGGTAAC--T-T-A-TTGCAGGTGT--TTT-T---C---TGACAG-----------CTA-TCTTA-T--------------------AA-T---------TTACTT---TTTgtgaagatataagagtttttttttttaagttatatattt
gi|13 : --TACACAGCCAGGAAAC--TAA-A-TTACAAGTAT--ACT-A---A---TAAAAAAAAAATTAAATTTA-TTTTT-TGTAAACATAT----------AA-TATAAGAGAGTTCTTTA--TTTTTTTAACT-GAA----TGATTTAAAA--CCAGGTGTAA-CGAATCA-------CAAT-CAAGTT-ATACCAACC---AGGCATGAA-GAATTA--A----AGGAAACACATTTTT--AAAA--CGTTC-ATGTTCTGTTATTTCTGCATGTATgaga
gi|14 : TAT----TTTACC-CTTATAATTACAA-TTAATCAGA-CAGCGAACAAAAA------CTCCT--AA-ATTTCAGAAT-TGCGATCG-AAAAGATGGACAC-ATTTGA-TATCATTGAG-T----CGGACACTCACAGTGCGTATGTAGTAGTATGAATAATACAC-GCAGGGTAAT--TTA-T-TTACAAGTATATTCTTA---C---TGACAA-----------TTA-TTTTT-T-----------------------T---------TTTTTT---
gi|15 : -TGTCT---TTT------AAACATTTTGGCAAAAGT--ATA--AG----AAGTAC--GGCC----------GATTA-AA-TATA-------ACATGGTGGATCTT---CG-----------------ATT-TGTTCGGCTTT------CAGGTAC--TTCTGTTAATTAAGTGATTGCAAAAATAAC-CTAACGTCGTTAATTGAACATA-CGAA-AAAAC-T-GTTT------AGTT-TA------ATTATTATT---CTATAT
gi|16 : TCTAACGTCATT-ATTGAATATA-CGAAGAAAAC-T-TTT-----AAAGTT-TA------ATTATTACT---CTAAACAGT-CAACCACAGACAAA-AACGAGTTTATTGCATTAAT-TTTG-----TT--AATT-A--ATTTAA-G-TTGT---TTAA-CT--TTAGAT-CGTGT-CCGA---CTCAAGATC-ACTT
gi|17 : AGAAAAA-T-TTTT----AA-GTT-TATTAATTACTATTACTTGGCTAAATAGTACAATCACAGACAAATGACGCATTT--TGC-TTA---TTTG-----TTCCAATG-AACACC-AA-G-TTGT---CCGA-CTAGTTAGAT-TGTGT-CCGAACCCTCAAGATCAACTTTA
gi|18 : tgAGAAAACAT-TTTT----AAAGTT-TA------ATTATTACT---GTAAATAGT-CAATCACAGACAAA-GACGAATTTATTGCATTAAT-TTTG-----TTCAAATG-AACACCAAA-G-TTGT---CCGA-CT--TTAGAT-TGTGT-CCGA---CTCAAGATC-ACTTTAC
gi|19 : tgAAAGCTAGAGTAA---G-C-CTG-GTTATTTTAT-ACTC-AGGTCATCTCGGTAT----TTTACC-TT-ATAATTACAT-TCA----GA-A-GCGAA---AAA------CTCCT--AATTT--CAGAAT-T-CGATCG-AAA-GTTGGACAC-ATTTc
gi|2 : AGTGATCGTGAGTCGGACA---------CCCTAC-CCTT--T-CCTTTTCGTATACAGATTTCTTCCGACTGTTT-TCCCTA--TAGTAATTGGTGTTGCCCGAATGAGCTCGA--AA---A-C-GTGTACTATTTTTT-GCTC-GGATCACCTTGGTAT----TCTAC---------TT-CAT-TTA----GA-T-GCAAT---AAT------CTCCC--AATAT--CTAAAT-T-CGTTCG-TAA-GTCGGACAC-ATTTGA-TAC---TGAG-T----CGGACGCTT-------ATAT----TATTATCAAT--TACACAGCCAGGTATT--TAA-A-TTACAAGTAT--TCT-G---T---TGACAA-----------TGGGTTCTT-T--------------------GA-T---------TTTTTT---TTTTTATAATT-AAA----TATTCTAAAA--CCAGATACAA-TGAATCG-------CAAT-AAAGTT-GTACCAACC---AGACATAAA-GAATGATGG----AGGAAACACATTTTT--ACAA--CGTTC-ATATTCTGTTATTTCTGCATGTGTAAAG-TTGATTCGAATTTTCAAATGCAAAATAAGTTATGTTGAGTTATCTCAT-TACAGACATTGTTAAA-AGTAGGTTT-AAAAAT-AACTTTTC-CCCTCATATATTGACCTCATTTTCTTCCAACGTTTAAAAGAT-ATGTGTGATTTTCAATGTGGACTG------TG----TGTATCAAATATCCACA--------AT-----TT-AC-TGCCC-GAC-ACAA-GATCAAATTGACTAATTGCGTTTGAA-CTTAATTATTTCAAAGTGGAATATAAAGTTGT-CAAAAGAAACATAT-------------ATGCATTCTTTA-TTTCCAATG--ATG--AA--T-TTATCAAATATTT-GTAAATAACA--CATTCAA-GTAA-A-TGTCT---TCT------ACACATTTTGT--AAAGT--GTA--AG----AAGTTT--GATC----------GTTCA-AAATATA-------ACCTGGCGGATCTT---CG-----------------ATTCTTTTCGGGTTT------CA-GTAC--TTTTG--A--TGAGCGAATGTAAAAATAACTCTAATGTCGTT-ATTGAATATA-AGAAGAAAAC-T-TTTC----GAAGTT-CA------ATTATTACT---CTAAATAGT-CAATCACAGACAAA-GACGAATTCATTGCATTAAA-TTTG-----TTTAAATG-TACATCAAA-A-TTGT---CCAA-TT--TCAGAT-CGTGT-CCGA---CTTAAGATC-ACCTTAC
gi|20 : --AAAGTT-GTA--AG----AAGTTT--GATCTCCTCGAATCGATTG-AAATATATATTATAGCCTGCCGGATCTT---CG-----------------ATT-TTCCC-GGTT----------G-----TTCTG--A--TGGTCAAGTGTAAAAATt
gi|21 : cGAGTCGGAAATTAGGAAGCCCCAGT-TCTT--T-TCTTTTC-T-TGCAGATGTTTTCCTAATG-------CCA--TGGTATTTGATGTTGCCCGAGAGAGATCGA--AA---
gi|22 : ggAATGGAACATCAATTG-TTGT---CCGAACT--TTAGATTCGTGTTCCGA---CTCAATGCC-ACTTTAtt
gi|23 : ttatgcATG-ACGGTCAAA-G-TTGTAGTCCGA-CT--CATGAT-TGCGT-TTGA---CTCACGATC-ACTTTGCgcacta
gi|3 : ttttgcagtcgAA----TAATCTAAAA--CCAGGTGTAA-TGAATCA-------CAGT-AAAGTT-GCACCAACC---AGGCATGAA-AAATGAGGG----AGGCAACACATTTTT--ACAA--CGTTC-ATTTTCTTTTATTCCTGCATGTA-AAGA-T-GATTCGAATTTCCACATGCAAAATAAGATATGTTAAGTGATCTC-CATGCAGACATTGTTAAA-AGTAGGTTTTAAAAATTAA-TTTTCTCCCTCATGTATTTACCTCATTTTCTTCCAACGCTTGAAACAT-CTACATGAAT--CAAGGTGGACTGAG--TCCGACTTTGTATCAAATAGCGGCA---------T-----TT-AC-TCTTC-GAC-TCAA-GATCAAATTGACTCATTGCGTTTGAA-CTTCAATATTTAAAAGTAGAATATAAAGTTTT-CAAAAGAAACATAT---------------GCATTCTATA-TTTACAATG--TTA--AA--T-GTATCAAATATGT-GTAAATAACA--CATTCAA-GTAA-AGTGTCT---TTT------ACACATTTTGC--AAAGT--ATA--GG----AAGTTT--GATC----------GGTCA-AAATATA-------TCCTGGCGGATCTT---CG-----------------ATT-TTTTCGGGTTT------CA-GTAC--TTTTG--A--TGAGCGAATGTAAAATAAACTCTAACGTCATT-ATTGAATAGA-AGAAAAAAAC-T-TTTTC---AAAGTT-TA------ATTATTACT---CTAAATAGT-CAATCATTGACAAA-GACGAATTTATTGCATTGAA-TTAG-----TTTAAATG-AACATCGAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCGA---CTCAAGTTC-ACTTTACcc
gi|4 : tttATTGTTAACCAGTAGGTTTAAACAAT-AA-TTGCT-CCCTCATATATTGACTTCATTTCTTTCCACGGCTTGAAT--T-CGATGTGATTTTCAAG-TGGATT-------TG----TGT-CCGAGC-TTTGTA--------ATCATTTTT-ACCTGTCC-GACCTCAACGATCAAATTGACCCATTGCGTTTGAAACTT--ATATTTCAATATAGAATA--AAGTTTTTCAAAAGAAACATAT--------------T-CATTCTATAATTTTCAATA--ATC--GAATT-TTAATAAATATTTTGTAAATAACA--CATTCAAAGTAA-A-TGTCT---TTTTACACTACACATTTTGC--AAGGT--ATA--AG----AAGTTT--GATC----------GATCA-AAACATA-------ACCTGGCGGATCTT---CGATCTTTTTTTTCCTTCGATT-TTTCCGGGTTTTATTACTA-GTAC--TTTTG--A--TGAGCCAATGTCAAAATAAATCCAACATCATT-ATTGAATATC-AGAAGAAAAC-T-TTTA----AAAATT-TA------ATTATTACT---CGAAATAGT-CAGTCACAGGC---------ATTTATTGCATT-AA-TT-----------AATG-AACACCAAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCTA---CTCAAGATC-ACTTTA
gi|5 : tAGTGATCGTAAGTCAGACA---------CCCTAC-TCTT--T-CCTTTTCGTATGCAGATTTATTACGACTGTTT-CTCCTA--TAGTATTTAGTGCTGCTTGATAGAACTAGA--AATTGA-T-GTG---TATTTCAT-GCTC-AGATCACCATGGTAT----TTTACCTC--ATAATG-CAT-CTA----GA-T-GCGAT---AAA------CTCCC--AACAA--TGAAAT-T-CAATCT-TGA-TTCGGACAC-ATTTAA-TAT---TGAGTT----CAGACACTA-------GGAT----TATTATGAAT--TA----------TAACTTTAATACTTACAGGTAT--TTC-A---T---GGACAA-----------CTA-TTTTA-C--------------------AA-T---------TTACTT---TTT
gi|5 : aaTTTTATAACT-GAA----TAATTTAAAA--CCAGGTGTAA-GG-------------AAT-AGAGTT-GTACCTGCTATGAGGCACGTG-GAATAAGGGAGCTAGGGAACACTTTTTT--ACAA--CGTTC-ATTTTCCGTTATTTGTTCATG--TAAAGTT-GATTgtgaatgcgcatggatttttattaaaatcatatttaatatatataagagctagggtacttgaattttataactgaataatttaaaaccaggtgtaaggaatagagttgtacctgctatgaggcacgtggaataagggagctagggaacacttttttacaacgttcattttccgttatttgttcatgtaaagttgatt
gi|6 : aaagtgatcgtaagtcagacaccctactctttccttttcgtatgcagatttattacgactgtttctcctatagtatttagtgctgcttgatagaactagaaattgatgtgtatttcatgctcagatcaccatggtattttacctcataatgcatctagatgcgataaactcccaacaatgaaattcaatcttgattcggacacatttaatattgagttcagacactaggattattatgaattataactttaatacttacaggtatttcatggacaactattttacaatttactttttgtgaatgcgcatggatttttattaaaatcatatttaatatatataagagctagggtacttgaaTCGTGAGTCGGACA---------CCCTGCCTCTTATTGCCCTTTCGT-T-CAGATTTCATCCGACTGTTCGCCCCTA--TAGTATTTGGTGTTGCCCGAAAGAGCTCGA--AA---A-TTGTGT-CTCTTTT-T-GCTCCGGATC-CCTTGGTAT----TCTACCTC--AAAATT-CATCTTA----GACT-CCCAA---AAA------CTCCC--AATAT--CTA--TCT-CGTTCGGTAA-GTCG-ACGCCATTTGA-TAT---TG-G-T----CGGACACTC-------ATAT----T-TTATGAAT--TACACAGCC-GGAAAC--TAA-A-TTACAAGTAT--ACT-A---A---TAAAAAAAATTACAT--TTA-TTTTT-TGTAAACATCATAATATAGAGAG-T---------TTCTTTAT-TTTTTTTAACTGAAA----TGATTTAAAAAACCAGGTGTAAACGAATCAA------CAATCAAAGTTTATAC-AACC---AGGCATGAAAGGATTAA------AGGAAACACATTTTTCTAAAA--CGTTCCATGTTCTGTTATTTCTGCATGTA
gi|7 : CGGAA--------AT-----TT--T-TATCC-AGT-TCAA-CATCAGATTG-TTCATTGCGTTTTAA-ATTGATTAC-----------------GGGTTTTCAAAATAAACCTAT-------------ATGCACTCTGCA-TTTCAAATATCATTTTAA--TATTATCA-----TC-CTGAATCTGA--TATT--A---AA-A-TTTCTGGGTTT------AGGAACTTTGA--AAAGTTCACACCAGTTTTAATTTTTCGATC----------GATCATGAATATT-------ACGTGGCGGATCTTTGCTG-----------------ATT-TTCCCGGTTTT------CGCGTACTATTTTA--A--T
gi|7 : gAC-TATTTT----AA--TTGTA------ATCATTGTT---TTTTA-AGT-TA--CACAATGGAA-GATGGATTGATTGCAT-GAA-TTTGATATTTTTA-------CATCAAA-G-TCGC---CCGA-CT--CCAGAT-Ctgtaatcattgttttttaagttacacaatggaagatggattgattgcatgaatttgatatttttacatcaaagtcgcccgactccagatctt
gi|8 : gcggaaatttttatccagttcaacatcagattgttcattgcgttttaaattgattacgggttttcaaaataaacctatatgcactctgcatttcaaatatcattttaatattatcatcctgaatctgatattaaaatttctgggtttaggaactttgaaaagttcacaccagttttaatttttcgatcgatcatgaatattacgtggcggatctttgctgattttcccggttttcgcgtAGTGATCGTGAGTCGGATA---------CCCAGC-TCTT--T-CCTTTTCATATGCATATTTCTTCCGACTGTTT-TCCCTA--TAGTATTTGGTGTTGCCCGAAAGAATTCGA--AA---A-C-GTGTACTATTTTTTTGCTC-GGATCACTTTGGTAT----TCTACCTC--ATAATT-CAT-TTA----GA-T-GCAAT---GAA------CTCCC--AATAT--CTAAAT-T-CGTTCG-TAA-GTCAGACAC-ATTTGA-TGT---TGAG-T----CGGACGCTC-------ATAT----CATTATGAAT--TACACAGCCATGTAAC--TAA-A-TTACAAGTAT--TCT-G---T---TGACAA-----------TTA-TTTTTAT--------------------AA-T---------TTATTT---TTTtt
gi|9 : aT-GCAAATAATATACATATAA--TAA-----------TTT------ACACATTTTGC--AAAGT--ATA--AG----AAGTTT--GATC----------AATCA-AAATATA-------GCCTGGCTGATCTT---TG-----------------ATT-TTTCCGGGTTT------TA-TTAC--TTTTG--A--TTAGCGGATGTAAAAATAACTCAAACGTCGTT-ATTGAATATATATAAGAACAC-T-TTTC----AAAATT-TA------ATTATTACT---CTAAATAGT-CAATCACAGACAAA-GACGAATTTATTGCATTAAATTTTT-----TTTAAATG-AACATCAAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCGA---CTCAAGATC-ACTTTAgtgaacatataagataa
Alignments
lowQualScore : 222222222 1111111 111111 1111111 111111111 66666666666666666666666666666666666666666666666666 111 11 1111 2222222 111 1111 22222222 3333333 33333 1 1 1 2222 33 1 44444 11 1 44444444444444 1 4444444444444 1 11 2222222 11 111 111 111111 11 1111 2222222222 1111111 33333333333333333 111111111 11111 111111 11111
lowQualScore : 3 222222222 5 77 5 5 3 0 5 66 55 7777777 77 5 4 4 0 8888 1 4 3 8 4 8888 4 4 8888 777777 3 55 1 4 4 1 44 4 4 4 777 4 9999 0 4444444 9999 55 0 1 99 66666 0 55 888888888 11111111111111111111111111111111111111111111111111 000 66 6 2222 99 88 8888888 6 6 111 0 6 1 888 4444 99 99 6 1 22222222 1 3333333 33333 0 0 9 0 0 0000 0 99 1 2 3 2 0 44444 00 0 3 44444444444444 0 8 8 8 8 0 8 8 1 0 22 66 0 4444444444444 0 3 8 1 11 0000000 8 6 1 6 99 1 33 777 000 666666 777 11 66 0000 66 1111111111 5 6666666 888 55555555555555555 5 777777777 66 88888 5 5 4 4 44444 0 4 111111 777 4 4 66 11111 66 3 3 3 666 3 55 3 4 777 4
lowQualScore : . ......... . .. . . . . . .. .. ....... .. . . . . .... . . . . . .... . . .... ...... . .. . . . . .. . . . ... . .... . ....... .... .. . . .. ..... . .. ......... .................................................. ... .. . .... .. .. ....... . . ... . . . ... .... .. .. . . ........ . ....... ..... . . . . . .... . .. . . . . . ..... .. . . .............. . . . . . . . . . . .. .. . ............. . . . . .. ....... . . . . .. . .. ... ... ...... ... .. .. .... .. .......... . ....... ... ................. . ......... .. ..... . . . . ..... . . ...... ... . . .. ..... .. . . . ... . .. . . ... .
lowQualScore : 0 999999999 7 99 7 0 0 1 0 99 55 2222222 22 3 4 4 1 5555 4 0 3 0 0 5555 0 0 0000 000000 0 55 0 0 0 2 11 0 0 4 888 4 4444 7 4444444 4444 55 7 3 55 44444 5 55 333333333 22222222222222222222222222222222222222222222222222 000 99 7 1111 22 88 3333333 7 7 777 7 7 0 777 2222 22 22 7 0 66666666 0 0000000 00000 7 0 8 0 0 2222 8 88 0 0 2 5 0 55555 22 0 2 88888888888888 8 0 0 0 0 8 0 2 4 8 44 22 6 0000000000000 6 2 0 4 00 6666666 0 0 0 7 22 0 33 333 000 444444 999 99 99 6666 99 9999999999 0 2222222 888 00000000000000000 0 444444444 99 00000 7 7 0 0 00000 8 0 555555 000 4 4 88 11111 00 6 6 6 444 6 00 6 0 000 0
consensus : AGTGATCGTGAGTCGGACA---------CCCTGC-TCTT--T-CCTTTTCGTATGCAGATTTCTTCCGACTGTTT-CCCCTA--TGGTATTTGGTGTTGCCCGAAAGAGCTCGA--AA---A-C-GTGTACTATTTTNT-GCTC-GGATCACCTTGGTAT----TCTACC-TCATAATT-CAT-TTA----GA-T-GCGAN---AAA------CTCCCAACAT--CNAAAT-T-CGTTCG-TAA-GTCGGACAC-ATTTGA-TAT---TGAG-T----CGGACGCTC-------GTAT----TATTATGAAT--TACACAGCCAGGTAAC--TAA-A-TTACAGGTAT--TCT-G---C---TGACAA-----------TTA-TTTTT-T-----------AA-T-------------TTATTT---TTTTTATAACT-AAA----TAATTTAAAA--CCAGGTGTAA-CGAATCA-------CAAT-AAAGTT-GTACCAACCA---GGCACGAA-GAATGAGGGAG----GAAACACATTTTT--ACAA--CGTTC-ATNTTCTGTTATTTCTGCATGTATAAAG-T-GATTCGAATTTTCANATGCAAAATAAGATATGTTGAGT-ATCTC-C-TGCGGACATTGTTAAA-AGTAGGTTTTAAAAAT-AA-TTTTC-CCCTCATATATTGACCTCATTTTCTTCCAACGCTTGAAANATCNACGTGATTTTCAAGGTGGACT-G-A---TCCGA-CTTTGTA-TCAAATATCGGCA---A------TTTAC-TGTCC-GAC-TCAA-GATCAAATTGACTCATTGCGTTTGAA-CTTGAATATTTCAAAGTAGAATATAAAGTTTTTCAAAAGAAACAT-------------ATATGCATTCTATA-TTTCCAATA--ATN--AA--T-TTATCAAATATTT-GTAAATAACA--CATTCAA-GTAA-A-TGTCT---TTT------ACACATTTTGN--AAAGT--ATA--AG----AAGTTT--GATC----------GATCA-AAATATA-------ACCTGGCGGATCTT---CG-----------------ATT-TTTCCGGGTTT------CA-GTAC--TTTTG--A--TGAGCGAATGTAAAAATAACTCTAACGTCGTT-ATTGAATATA-AGAAGAAAAC-T-TTTT----AAAGTT-TA------ATTATTACT---CTAAATAGT-CAATCACAGACAAA-GACGAATTTATTGCATTAAA-TTTG-----TTTAAATG-AACATCAAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCGA---CTCAAGATC-ACTTTAC
Reference ( family-7343 ) : AGTGATCGTGAGTCGGACA---------CCCTGC-TCTT--T-CCTTTTCGTATGCAGATTTCTTCCGACTGTTT-CCCCTA--TGGTATTTGGTGTTGCCCGAAAGAGCTCGA--AA---A-C-GTGTACTATTTTNT-GCTC-GGATCACCTTGGTAT----TCTACC-TCATAATT-CAT-TTA----GA-T-GCGAN---AAA------CTCCCAACAT--CNAAAT-T-CGTTCG-TAA-GTCGGACAC-ATTTGA-TAT---TGAG-T----CGGACGCTC-------GTAT----TATTATGAAT--TACACAGCCAGGTAAC--TAA-A-TTACAGGTAT--TCT-G---C---TGACAA-----------TTA-TTTTT-T-----------AA-T-------------TTATTT---TTTTTATAACT-AAA----TAATTTAAAA--CCAGGTGTAA-CGAATCA-------CAAT-AAAGTT-GTACCAACCA---GGCACGAA-GAATGAGGGAG----GAAACACATTTTT--ACAA--CGTTC-ATNTTCTGTTATTTCTGCATGTATAAAG-T-GATTCGAATTTTCANATGCAAAATAAGATATGTTGAGT-ATCTC-C-TGCGGACATTGTTAAA-AGTAGGTTTTAAAAAT-AA-TTTTC-CCCTCATATATTGACCTCATTTTCTTCCAACGCTTGAAA-ATCNACGTGATTTTCAAGGTGGACT-G-A---TCCGA-CTTTGTA-TCAAATATCGGCA---A------TTTAC-TGTCC-GAC-TCAA-GATCAAATTGACTCATTGCGTTTGAA-CTTGAATATTTCAAAGTAGAATATAAAGTTTTTCAAAAGAAACAT-------------ATATGCATTCTATA-TTTCCAATA--ATN--AA--T-TTATCAAATATTT-GTAAATAACA--CATTCAA-GTAA-A-TGTCT---TTT------ACACATTTTGN--AAAGT--ATA--AG----AAGTTT--GATC----------GATCA-AAATATA-------ACCTGGCGGATCTT---CG-----------------ATT-TTTCCGGGTTT------CA-GTAC--TTTTG--A--TGAGCGAATGTAAAAATAACTCTAACGTCGTT-ATTGAATATA-AGAAGAAAAC-T-TTTT----AAAGTT-TA------ATTATTACT---CTAAATAGT-CAATCACAGACAAA-GACGAATTTATTGCATTAAA-TTTG-----TTTAAATG-AACATCAAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCGA---CTCAAGATC-ACTTTAC
gi|1 : AGTGATCGTGAATCGGACA---------CCCTGC-TCTT--T-CCTATTTGCATGTTGATTTCTTCCAACTGTTT-CCCCTA--TGGTATTTGGTGTCGCCCAAAAGAGCTCGA--AA---T-T-GTGAAC--TTTTTT-ACTC-GGATCACCTT--------------C-TTA-AATT-CAT-TCA----GA-T-GCGAT---AAA------CACCCAACAT--CCAAAT-T-TGTTTG-TAA-GTCGGACAC-ATTTGATTAT---TGAA-TCATGCAGACACGC-------AAAT----TATTATGAAT--TATACAGGCAGGTAAC--T-T-T-TTGCAGGTAT--TCT-G---C---TTACAA-----------ACA-TTTTA-T-----------AACT-------------TTGTATGAATTTTCAT---T-AAAATCTTAATTTAA
gi|1 : a-T-------------TTATTT---TTTCTA--ATT-AAA----TTATTCAAA---TCAGGTGTAA-TGAATCAATTAAGGTAAT-AAATTT-AAACCAAACT---GGCACGTA-GAATGGGGTAG----GGGGCACCTTTTT--ACAAGTTGTTC-ATTTTCTGTTATTTCTACACATA--------------AATTTTTATATGCAAAATAAGATATA-------ATGCC-C---CGGTCATTGTTAAA-AGTAGGTTTTAAAGAT-AA-TT------------TATTGACCCCATTTTCTCCCAACACTTGAGATTTCGATGTGATTTTCAAGGTGGACT-G-ACTGTCCGA-TTTTGTT-TCAAATATCGACATTTAAATGATTTTAC-TGCCCAGAC-TCAA-GATCAAATAGACTCATTGTGTTTGAA-CTTGAATATTTCAAAATAGAATGTAAATTTTTTCGCAAGAAACACATGTACATCTATAATATACATTCTATA-TTTTCATTA--AT----A--T-TTATCATAAATTT-ATGAATAATA--CATTCAA-GTAATATTGTCT---CTT------ACACTTTTTAA--AAAAT--TTA--AG----AAGTTT--GATC----------GATCA-AAATATA-------ACCTGGCGGATCTT---CG-----------------ATT-TTTCCGGGTTT------CA-GTAC--TTTTC--T--TGGTTGAGTGTAAAAACAACTGTAACACCGTA-ATTGATTATC-AGAAGACAAC-T-TTTTTAAAAAAGTT-TG------ATTATTGCT---CTGTAAAGT-CAATCACAGAGGAA-GATGAATCTATTGCATTAAT-TTTG-----TTAGAATC-AACATCAAA-GTTTGT---CAGC-CT--GTAGAT-TGTAT-CTGA---CTCAAGATC-ATTTTACtaagataagagggctctttattttttctaattaaattattcaaatcaggtgtaatgaatcaattaaggtaataaatttaaaccaaactggcacgtagaatggggtagggggcacctttttacaagttgttcattttctgttatttctacacataaatttttatatgcaaaataagatataatgccccggtcattgttaaaagtaggttttaaagataatttattgaccccattttctcccaacacttgagatttcgatgtgattttcaaggtggactgactgtccgattttgtttcaaatatcgacatttaaatgattttactgcccagactcaagatcaaatagactcattgtgtttgaacttgaatatttcaaaatagaatgtaaattttttcgcaagaaacacatgtacatctataatatacattctatattttcattaatatttatcataaatttatgaataatacattcaagtaatattgtctcttacactttttaaaaaatttaagaagtttgatcgatcaaaatataacctggcggatcttcgatttttccgggtttcagtacttttcttggttgagtgtaaaaacaactgtaacaccgtaattgattatcagaagacaacttttttaaaaaagtttgattattgctctgtaaagtcaatcacagaggaagatgaatctattgcattaattttgttagaatcaacatcaaagtttgtcagcctgtagattgtatctgactcaagatcattttacc
gi|10 : aagtgatcgtgaatcggacaccctgctctttcctatttgcatgttgatttcttccaactgtttcccctatggtatttggtgtcgcccaaaagagctcgaaattgtgaacttttttactcggatcaccttcttaaattcattcagatgcgataaacacccaacatccaaatttgtttgtaagtcggacacatttgattattgaatcatgcagacacgcaaattattatgaattatacaggcaggtaactttttgcaggtattctgcttacaaacattttataactttgtatgaattttcattaaaatcttaatttaataagataagagggctcAGTGATCTTGAGCCGAA-A---------CCCTTC-ACTC--T-CCCTTTCGTATTCAGATTATTTCCGACTGT---CTCCTG--AGGTATTTGGTGTTACTCGAAAGAGCTCGA--AAT--ATT-GTGTACTATTATCT-GCTC-GGATCAC--TG----------TGC-----------------------A-T-GCGAC---AAA------CTCCCAACAT--CGAAAT-T-CGGTCG-TAC-GTCGGACAC-ATTC-A-TTT---TCAG-T----CGGACACTG-------ATAT------TTATAA---------AGTCGGGTCGCA-TAT-A-TCGCTGGTAT--TCT-A---C---TGATAA-----------CAA-TTTCA-T-----------AA-T-------------TTACTT---TTTGTA-AACc
gi|11 : aTTGGTGTTGCCCGAAAGAGCACGA--AA---A-C-GTGCACTATTTTTT-GCCC-GGACCACCTTGGTATATATTCTACC-CCATAATT-CAT-TTA----GA-T-GCAAA---AAAAAAAAACTCCCAATAT--CTAAAT-T-CGT------------------ATTTGA-TAT---TGAG-T----CGGATGCTC-------GTAT----TATTATGAAT--TACACAACCAGGTAAC--TAA-A-TTAAACGTAT--TCT-GGTACATGTAACAA-----------TGT-TTTTTAT-----------AA-T-------------TTATTT---TTTTacgt
gi|12 : GATTTTTTTCGGCTATTT-CCCCTACATGGTATTTAGTGTTGCCGGATAGAGCTCGA--AA---T-T-GTATACTATTTTAT-GCTC-AGATCACACTGGCAT----TTTACC-TCATAATG-CAT-CTA----GA-T-GCGAT---CAACT----CTCTCAACAT--CAAAAT-T-CGTTCG-CAC-GTCGGCCAC-ACTTGA-TTT---TGAG-T----CATACACGC-------GTAT----TATTATGAAA--TATACAGGTAGGTAAC--T-T-A-TTGCAGGTGT--TTT-T---C---TGACAG-----------CTA-TCTTA-T-----------AA-T-------------TTACTT---TTTgtgaagatataagagtttttttttttaagttatatattt
gi|13 : --TACACAGCCAGGAAAC--TAA-A-TTACAAGTAT--ACT-A---A---TAAAAAAAAAATTAAATTTA-TTTTT-TGTAAACATAT-AA-TATAAGAGAG----TTCTTTA--TTTTTTTAACT-GAA----TGATTTAAAA--CCAGGTGTAA-CGAATCA-------CAAT-CAAGTT-ATACCAACCA---GGCATGAA-GAATTA--AAG----GAAACACATTTTT--AAAA--CGTTC-ATGTTCTGTTATTTCTGCATGTATgaga
gi|14 : TAT----TTTACCCTTATAATTACAA-TTAATCAGA-CAGCGAACAAAAA------CTCCTAA-ATTTCAGAAT-TGCGATCG-AAAAGATGGACAC-ATTTGA-TATCATTGAG-T----CGGACACTCACAGTGCGTATGTAGTAGTATGAATAATACAC-GCAGGGTAAT--TTA-T-TTACAAGTATATTCTTA---C---TGACAA-----------TTA-TTTTT-T-------------------------------TTT---TTTT
gi|15 : -TGTCT---TTT------AAACATTTTGGCAAAAGT--ATA--AG----AAGTAC--GGCC----------GATTA-AA-TATA-------ACATGGTGGATCTT---CG-----------------ATT-TGTTCGGCTTT------CAGGTAC--TTCTGTTAATTAAGTGATTGCAAAAATAAC-CTAACGTCGTTAATTGAACATA-CGAA-AAAAC-T-GTTT------AGTT-TA------ATTATTATT---CTATAT
gi|16 : TCTAACGTCATT-ATTGAATATA-CGAAGAAAAC-T-TTT-----AAAGTT-TA------ATTATTACT---CTAAACAGT-CAACCACAGACAAA-AACGAGTTTATTGCATTAAT-TTTG-----TT--AATT-A--ATTTAA-G-TTGT---TTAA-CT--TTAGAT-CGTGT-CCGA---CTCAAGATC-ACTT
gi|17 : AGAAAAA-T-TTTT----AA-GTT-TATTAATTACTATTACTTGGCTAAATAGTACAATCACAGACAAATGACGCATTT--TGC-TTA---TTTG-----TTCCAATG-AACACC-AA-G-TTGT---CCGA-CTAGTTAGAT-TGTGT-CCGAACCCTCAAGATCAACTTTA
gi|18 : tgAGAAAACAT-TTTT----AAAGTT-TA------ATTATTACT---GTAAATAGT-CAATCACAGACAAA-GACGAATTTATTGCATTAAT-TTTG-----TTCAAATG-AACACCAAA-G-TTGT---CCGA-CT--TTAGAT-TGTGT-CCGA---CTCAAGATC-ACTTTAC
gi|19 : tgAAAGCTAGAGTAA---G-C-CTG-GTTATTTTAT-ACTC-AGGTCATCTCGGTAT----TTTACC-TTATAATTACAT-TCA----GA-A-GCGAA---AAA------CTCCTAATTT--CAGAAT-T-CGATCG-AAA-GTTGGACAC-ATTTc
gi|2 : AGTGATCGTGAGTCGGACA---------CCCTAC-CCTT--T-CCTTTTCGTATACAGATTTCTTCCGACTGTTT-TCCCTA--TAGTAATTGGTGTTGCCCGAATGAGCTCGA--AA---A-C-GTGTACTATTTTTT-GCTC-GGATCACCTTGGTAT----TCTAC--------TT-CAT-TTA----GA-T-GCAAT---AAT------CTCCCAATAT--CTAAAT-T-CGTTCG-TAA-GTCGGACAC-ATTTGA-TAC---TGAG-T----CGGACGCTT-------ATAT----TATTATCAAT--TACACAGCCAGGTATT--TAA-A-TTACAAGTAT--TCT-G---T---TGACAA-----------TGGGTTCTT-T-----------GA-T-------------TTTTTT---TTTTTATAATT-AAA----TATTCTAAAA--CCAGATACAA-TGAATCG-------CAAT-AAAGTT-GTACCAACCA---GACATAAA-GAATGATGGAG----GAAACACATTTTT--ACAA--CGTTC-ATATTCTGTTATTTCTGCATGTGTAAAG-TTGATTCGAATTTTCAAATGCAAAATAAGTTATGTTGAGTTATCTCAT-TACAGACATTGTTAAA-AGTAGGTTT-AAAAAT-AACTTTTC-CCCTCATATATTGACCTCATTTTCTTCCAACGTTTAAAAGATATGTGTGATTTTCAATGTGGACT-G------------TGTGTA-TCAAATATCCACA---A------TTTAC-TGCCC-GAC-ACAA-GATCAAATTGACTAATTGCGTTTGAA-CTTAATTATTTCAAAGTGGAATATAAAGTTGT-CAAAAGAAACAT-------------ATATGCATTCTTTA-TTTCCAATG--ATG--AA--T-TTATCAAATATTT-GTAAATAACA--CATTCAA-GTAA-A-TGTCT---TCT------ACACATTTTGT--AAAGT--GTA--AG----AAGTTT--GATC----------GTTCA-AAATATA-------ACCTGGCGGATCTT---CG-----------------ATTCTTTTCGGGTTT------CA-GTAC--TTTTG--A--TGAGCGAATGTAAAAATAACTCTAATGTCGTT-ATTGAATATA-AGAAGAAAAC-T-TTTC----GAAGTT-CA------ATTATTACT---CTAAATAGT-CAATCACAGACAAA-GACGAATTCATTGCATTAAA-TTTG-----TTTAAATG-TACATCAAA-A-TTGT---CCAA-TT--TCAGAT-CGTGT-CCGA---CTTAAGATC-ACCTTAC
gi|20 : --AAAGTT-GTA--AG----AAGTTT--GATCTCCTCGAATCGATTG-AAATATATATTATAGCCTGCCGGATCTT---CG-----------------ATT-TTCCC-GGTT----------G-----TTCTG--A--TGGTCAAGTGTAAAAATt
gi|21 : cGAGTCGGAAATTAGGAAGCCCCAGT-TCTT--T-TCTTTTC-T-TGCAGATGTTTTCCTAATG-------CCA--TGGTATTTGATGTTGCCCGAGAGAGATCGA--AA---
gi|22 : ggAATGGAACATCAATTG-TTGT---CCGAACT--TTAGATTCGTGTTCCGA---CTCAATGCC-ACTTTAtt
gi|23 : ttatgcATG-ACGGTCAAA-G-TTGTAGTCCGA-CT--CATGAT-TGCGT-TTGA---CTCACGATC-ACTTTGCgcacta
gi|3 : ttttgcagtcgAA----TAATCTAAAA--CCAGGTGTAA-TGAATCA-------CAGT-AAAGTT-GCACCAACCA---GGCATGAA-AAATGAGGGAG----GCAACACATTTTT--ACAA--CGTTC-ATTTTCTTTTATTCCTGCATGTA-AAGA-T-GATTCGAATTTCCACATGCAAAATAAGATATGTTAAGTGATCTC-CATGCAGACATTGTTAAA-AGTAGGTTTTAAAAATTAA-TTTTCTCCCTCATGTATTTACCTCATTTTCTTCCAACGCTTGAAACATCTACATGAAT--CAAGGTGGACT-G-AG--TCCGA-CTTTGTA-TCAAATAGCGGCA----------TTTAC-TCTTC-GAC-TCAA-GATCAAATTGACTCATTGCGTTTGAA-CTTCAATATTTAAAAGTAGAATATAAAGTTTT-CAAAAGAAACAT-------------AT--GCATTCTATA-TTTACAATG--TTA--AA--T-GTATCAAATATGT-GTAAATAACA--CATTCAA-GTAA-AGTGTCT---TTT------ACACATTTTGC--AAAGT--ATA--GG----AAGTTT--GATC----------GGTCA-AAATATA-------TCCTGGCGGATCTT---CG-----------------ATT-TTTTCGGGTTT------CA-GTAC--TTTTG--A--TGAGCGAATGTAAAATAAACTCTAACGTCATT-ATTGAATAGA-AGAAAAAAAC-T-TTTTC---AAAGTT-TA------ATTATTACT---CTAAATAGT-CAATCATTGACAAA-GACGAATTTATTGCATTGAA-TTAG-----TTTAAATG-AACATCGAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCGA---CTCAAGTTC-ACTTTACcc
gi|4 : tttATTGTTAACCAGTAGGTTTAAACAAT-AA-TTGCT-CCCTCATATATTGACTTCATTTCTTTCCACGGCTTGAAT--TCGATGTGATTTTCAAG-TGGATTTGTG---TCCGAGCTTTGTAATCA----TT--------------TTTACCTGTCC-GACCTCAACGATCAAATTGACCCATTGCGTTTGAAACTT--ATATTTCAATATAGAATA--AAGTTTTTCAAAAGAAACAT-------------AT-T-CATTCTATAATTTTCAATA--ATC--GAATT-TTAATAAATATTTTGTAAATAACA--CATTCAAAGTAA-A-TGTCT---TTTTACACTACACATTTTGC--AAGGT--ATA--AG----AAGTTT--GATC----------GATCA-AAACATA-------ACCTGGCGGATCTT---CGATCTTTTTTTTCCTTCGATT-TTTCCGGGTTTTATTACTA-GTAC--TTTTG--A--TGAGCCAATGTCAAAATAAATCCAACATCATT-ATTGAATATC-AGAAGAAAAC-T-TTTA----AAAATT-TA------ATTATTACT---CGAAATAGT-CAGTCACAGGC---------ATTTATTGCATT-AA-TT-----------AATG-AACACCAAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCTA---CTCAAGATC-ACTTTA
gi|5 : tAGTGATCGTAAGTCAGACA---------CCCTAC-TCTT--T-CCTTTTCGTATGCAGATTTATTACGACTGTTT-CTCCTA--TAGTATTTAGTGCTGCTTGATAGAACTAGA--AATTGA-T-GTG---TATTTCAT-GCTC-AGATCACCATGGTAT----TTTACC-TCATAATG-CAT-CTA----GA-T-GCGAT---AAA------CTCCCAACAA--TGAAAT-T-CAATCT-TGA-TTCGGACAC-ATTTAA-TAT---TGAGTT----CAGACACTA-------GGAT----TATTATGAAT--TA----------TAACTTTAATACTTACAGGTAT--TTC-A---T---GGACAA-----------CTA-TTTTA-C-----------AA-T-------------TTACTT---TTT
gi|5 : aaTTTTATAACT-GAA----TAATTTAAAA--CCAGGTGTAA-GGAAT--------------AGAGTT-GTACCTGCTATGAGGCACGTG-GAATAAGGGAGCTAGGGAACACTTTTTT--ACAA--CGTTC-ATTTTCCGTTATTTGTTCATG--TAAAGTT-GATTgtgaatgcgcatggatttttattaaaatcatatttaatatatataagagctagggtacttgaattttataactgaataatttaaaaccaggtgtaaggaatagagttgtacctgctatgaggcacgtggaataagggagctagggaacacttttttacaacgttcattttccgttatttgttcatgtaaagttgatt
gi|6 : aaagtgatcgtaagtcagacaccctactctttccttttcgtatgcagatttattacgactgtttctcctatagtatttagtgctgcttgatagaactagaaattgatgtgtatttcatgctcagatcaccatggtattttacctcataatgcatctagatgcgataaactcccaacaatgaaattcaatcttgattcggacacatttaatattgagttcagacactaggattattatgaattataactttaatacttacaggtatttcatggacaactattttacaatttactttttgtgaatgcgcatggatttttattaaaatcatatttaatatatataagagctagggtacttgaaTCGTGAGTCGGACA---------CCCTGCCTCTTATTGCCCTTTCGT-T-CAGATTTCATCCGACTGTTCGCCCCTA--TAGTATTTGGTGTTGCCCGAAAGAGCTCGA--AA---A-TTGTGT-CTCTTTT-T-GCTCCGGATC-CCTTGGTAT----TCTACC-TCAAAATT-CATCTTA----GACT-CCCAA---AAA------CTCCCAATAT--CTA--TCT-CGTTCGGTAA-GTCG-ACGCCATTTGA-TAT---TG-G-T----CGGACACTC-------ATAT----T-TTATGAAT--TACACAGCC-GGAAAC--TAA-A-TTACAAGTAT--ACT-A---A---TAAAAAAAATTACAT--TTA-TTTTT-TGTAAACATCATAA-TATAGAGAGTTTCTTTATTT---TTTTTA--ACTGAAA----TGATTTAAAAAACCAGGTGTAAACGAATCAA------CAATCAAAGTTTATAC-AACCA---GGCATGAAAGGATTAA--AG----GAAACACATTTTTCTAAAA--CGTTCCATGTTCTGTTATTTCTGCATGTA
gi|7 : CGGAA---A------TTT-T-TATCC-AGT-TCAA-CATCAGATTG-TTCATTGCGTTTTAA-ATTGATTAC-----------------GGGTTTTCAAAATAAACCT-------------ATATGCACTCTGCA-TTTCAAATATCATTTTAA--TATTATCA-----TC-CTGAATCTGA--TATT--A---AA-A-TTTCTGGGTTT------AGGAACTTTGA--AAAGTTCACACCAGTTTTAATTTTTCGATC----------GATCATGAATATT-------ACGTGGCGGATCTTTGCTG-----------------ATT-TTCCCGGTTTT------CGCGTACTATTTTA--A--T
gi|7 : gAC-TATTTT----AA--TTGTA------ATCATTGTT---TTTTA-AGT-TA--CACAATGGAA-GATGGATTGATTGCAT-GAA-TTTGATATTTTTA-------CATCAAA-G-TCGC---CCGA-CT--CCAGAT-Ctgtaatcattgttttttaagttacacaatggaagatggattgattgcatgaatttgatatttttacatcaaagtcgcccgactccagatctt
gi|8 : gcggaaatttttatccagttcaacatcagattgttcattgcgttttaaattgattacgggttttcaaaataaacctatatgcactctgcatttcaaatatcattttaatattatcatcctgaatctgatattaaaatttctgggtttaggaactttgaaaagttcacaccagttttaatttttcgatcgatcatgaatattacgtggcggatctttgctgattttcccggttttcgcgtAGTGATCGTGAGTCGGATA---------CCCAGC-TCTT--T-CCTTTTCATATGCATATTTCTTCCGACTGTTT-TCCCTA--TAGTATTTGGTGTTGCCCGAAAGAATTCGA--AA---A-C-GTGTACTATTTTTTTGCTC-GGATCACTTTGGTAT----TCTACC-TCATAATT-CAT-TTA----GA-T-GCAAT---GAA------CTCCCAATAT--CTAAAT-T-CGTTCG-TAA-GTCAGACAC-ATTTGA-TGT---TGAG-T----CGGACGCTC-------ATAT----CATTATGAAT--TACACAGCCATGTAAC--TAA-A-TTACAAGTAT--TCT-G---T---TGACAA-----------TTA-TTTTTAT-----------AA-T-------------TTATTT---TTTtt
gi|9 : aT-GCAAATAATATACATATAA--TAA-----------TTT------ACACATTTTGC--AAAGT--ATA--AG----AAGTTT--GATC----------AATCA-AAATATA-------GCCTGGCTGATCTT---TG-----------------ATT-TTTCCGGGTTT------TA-TTAC--TTTTG--A--TTAGCGGATGTAAAAATAACTCAAACGTCGTT-ATTGAATATATATAAGAACAC-T-TTTC----AAAATT-TA------ATTATTACT---CTAAATAGT-CAATCACAGACAAA-GACGAATTTATTGCATTAAATTTTT-----TTTAAATG-AACATCAAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCGA---CTCAAGATC-ACTTTAgtgaacatataagataa
Alignments
lowQualScore : 222222222 1111111 111111 1111111 111111111 66666666666666666666666666666666666666666666666666 111 11 1111 2222222 111 2222222 22222222 3333333 33333 1 1 1 2222 11 1 44444 11 1 44444444444444 1 4444444444444 1 11 2222222 11 111 111 111111 11 1111 2222222222 1111111 33333333333333333 111111111 11111 111111 11111
lowQualScore : 3 222222222 5 77 5 5 3 0 5 66 55 7777777 77 5 4 4 0 8888 1 4 3 8 4 8888 4 4 8888 777777 3 55 1 4 4 1 44 4 4 4 777 4 9999 0 4444444 9999 55 0 1 99 66666 0 55 888888888 11111111111111111111111111111111111111111111111111 000 66 6 2222 99 88 8888888 6 6 111 0 6 1 2222222 99 99 6 1 22222222 1 3333333 33333 0 0 9 0 0 0000 0 44 1 2 3 2 0 44444 00 0 3 44444444444444 0 8 8 8 8 0 8 8 1 0 22 66 0 4444444444444 0 3 8 1 11 0000000 8 6 1 6 99 1 33 777 000 666666 777 11 66 0000 66 1111111111 5 6666666 888 55555555555555555 5 777777777 66 88888 5 5 4 4 44444 0 4 111111 777 4 4 66 11111 66 3 3 3 666 3 55 3 4 777 4
lowQualScore : . ......... . .. . . . . . .. .. ....... .. . . . . .... . . . . . .... . . .... ...... . .. . . . . .. . . . ... . .... . ....... .... .. . . .. ..... . .. ......... .................................................. ... .. . .... .. .. ....... . . ... . . . ....... .. .. . . ........ . ....... ..... . . . . . .... . .. . . . . . ..... .. . . .............. . . . . . . . . . . .. .. . ............. . . . . .. ....... . . . . .. . .. ... ... ...... ... .. .. .... .. .......... . ....... ... ................. . ......... .. ..... . . . . ..... . . ...... ... . . .. ..... .. . . . ... . .. . . ... .
lowQualScore : 0 999999999 7 99 7 0 0 1 0 99 55 2222222 22 3 4 4 1 5555 4 0 3 0 0 5555 0 0 0000 000000 0 55 0 0 0 2 11 0 0 4 888 4 4444 7 4444444 4444 55 7 3 55 44444 5 55 333333333 22222222222222222222222222222222222222222222222222 000 99 7 1111 22 88 3333333 7 7 777 7 7 0 8888888 22 22 7 0 66666666 0 0000000 00000 7 0 8 0 0 2222 8 22 0 0 2 5 0 55555 22 0 2 88888888888888 8 0 0 0 0 8 0 2 4 8 44 22 6 0000000000000 6 2 0 4 00 6666666 0 0 0 7 22 0 33 333 000 444444 999 99 99 6666 99 9999999999 0 2222222 888 00000000000000000 0 444444444 99 00000 7 7 0 0 00000 8 0 555555 000 4 4 88 11111 00 6 6 6 444 6 00 6 0 000 0
consensus : AGTGATCGTGAGTCGGACA---------CCCTGC-TCTT--T-CCTTTTCGTATGCAGATTTCTTCCGACTGTTT-CCCCTA--TGGTATTTGGTGTTGCCCGAAAGAGCTCGA--AA---A-C-GTGTACTATTTTNT-GCTC-GGATCACCTTGGTAT----TCTACC-TCATAATT-CAT-TTA----GA-T-GCGAN---AAA------CTCCCAACAT--CNAAAT-T-CGTTCG-TAA-GTCGGACAC-ATTTGA-TAT---TGAG-T----CGGACGCTC-------GTAT----TATTATGAAT--TACACAGCCAGGTAAC--TAA-A-TTACAGGTAT--TCT-G---C---TGACAA-----------TTA-TTTTT-T-----------AA-T-------------TTATTT---TTTTTATAACT-AAA----TAATTTAAAA--CCAGGTGTAA-CGAATCA-------CAAT-AAAGTT-GTACCAACC---AGGCACGAA-GAATGAGGG----AGGAAACACATTTTT--ACAA--CGTTC-ATNTTCTGTTATTTCTGCATGTATAAAG-T-GATTCGAATTTTCANATGCAAAATAAGATATGTTGAGT-ATCTC-C-TGCGGACATTGTTAAA-AGTAGGTTTTAAAAAT-AA-TTTTC-CCCTCATATATTGACCTCATTTTCTTCCAACGCTTGAAANATCNACGTGATTTTCAAGGTGGACT-G-A---TCCGA-CTTTGTA-TCAAATATCGGCA---A------TTTAC-TGTCC-GAC-TCAA-GATCAAATTGACTCATTGCGTTTGAA-CTTGAATATTTCAAAGTAGAATATAAAGTTTTTCAAAAGAAACAT-------------ATATGCATTCTATA-TTTCCAATA--ATN--AA--T-TTATCAAATATTT-GTAAATAACA--CATTCAA-GTAA-A-TGTCT---TTT------ACACATTTTGN--AAAGT--ATA--AG----AAGTTT--GATC----------GATCA-AAATATA-------ACCTGGCGGATCTT---CG-----------------ATT-TTTCCGGGTTT------CA-GTAC--TTTTG--A--TGAGCGAATGTAAAAATAACTCTAACGTCGTT-ATTGAATATA-AGAAGAAAAC-T-TTTT----AAAGTT-TA------ATTATTACT---CTAAATAGT-CAATCACAGACAAA-GACGAATTTATTGCATTAAA-TTTG-----TTTAAATG-AACATCAAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCGA---CTCAAGATC-ACTTTAC
Reference ( family-7343 ) : AGTGATCGTGAGTCGGACA---------CCCTGC-TCTT--T-CCTTTTCGTATGCAGATTTCTTCCGACTGTTT-CCCCTA--TGGTATTTGGTGTTGCCCGAAAGAGCTCGA--AA---A-C-GTGTACTATTTTNT-GCTC-GGATCACCTTGGTAT----TCTACC-TCATAATT-CAT-TTA----GA-T-GCGAN---AAA------CTCCCAACAT--CNAAAT-T-CGTTCG-TAA-GTCGGACAC-ATTTGA-TAT---TGAG-T----CGGACGCTC-------GTAT----TATTATGAAT--TACACAGCCAGGTAAC--TAA-A-TTACAGGTAT--TCT-G---C---TGACAA-----------TTA-TTTTT-T-----------AA-T-------------TTATTT---TTTTTATAACT-AAA----TAATTTAAAA--CCAGGTGTAA-CGAATCA-------CAAT-AAAGTT-GTACCAACC---AGGCACGAA-GAATGAGGG----AGGAAACACATTTTT--ACAA--CGTTC-ATNTTCTGTTATTTCTGCATGTATAAAG-T-GATTCGAATTTTCANATGCAAAATAAGATATGTTGAGT-ATCTC-C-TGCGGACATTGTTAAA-AGTAGGTTTTAAAAAT-AA-TTTTC-CCCTCATATATTGACCTCATTTTCTTCCAACGCTTGAAANATCNACGTGATTTTCAAGGTGGACT-G-A---TCCGA-CTTTGTA-TCAAATATCGGCA---A------TTTAC-TGTCC-GAC-TCAA-GATCAAATTGACTCATTGCGTTTGAA-CTTGAATATTTCAAAGTAGAATATAAAGTTTTTCAAAAGAAACAT-------------ATATGCATTCTATA-TTTCCAATA--ATN--AA--T-TTATCAAATATTT-GTAAATAACA--CATTCAA-GTAA-A-TGTCT---TTT------ACACATTTTGN--AAAGT--ATA--AG----AAGTTT--GATC----------GATCA-AAATATA-------ACCTGGCGGATCTT---CG-----------------ATT-TTTCCGGGTTT------CA-GTAC--TTTTG--A--TGAGCGAATGTAAAAATAACTCTAACGTCGTT-ATTGAATATA-AGAAGAAAAC-T-TTTT----AAAGTT-TA------ATTATTACT---CTAAATAGT-CAATCACAGACAAA-GACGAATTTATTGCATTAAA-TTTG-----TTTAAATG-AACATCAAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCGA---CTCAAGATC-ACTTTAC
gi|1 : AGTGATCGTGAATCGGACA---------CCCTGC-TCTT--T-CCTATTTGCATGTTGATTTCTTCCAACTGTTT-CCCCTA--TGGTATTTGGTGTCGCCCAAAAGAGCTCGA--AA---T-T-GTGAAC--TTTTTT-ACTC-GGATCACCTT--------------C-TTA-AATT-CAT-TCA----GA-T-GCGAT---AAA------CACCCAACAT--CCAAAT-T-TGTTTG-TAA-GTCGGACAC-ATTTGATTAT---TGAA-TCATGCAGACACGC-------AAAT----TATTATGAAT--TATACAGGCAGGTAAC--T-T-T-TTGCAGGTAT--TCT-G---C---TTACAA-----------ACA-TTTTA-T-----------AACT-------------TTGTATGAATTTTCAT---T-AAAATCTTAATTTAA
gi|1 : a-T-------------TTATTT---TTTCTA--ATT-AAA----TTATTCAAA---TCAGGTGTAA-TGAATCAATTAAGGTAAT-AAATTT-AAACCAAAC---TGGCACGTA-GAATGGGGT----AGGGGGCACCTTTTT--ACAAGTTGTTC-ATTTTCTGTTATTTCTACACATA--------------AATTTTTATATGCAAAATAAGATATA-------ATGCC-C---CGGTCATTGTTAAA-AGTAGGTTTTAAAGAT-AA-TT------------TATTGACCCCATTTTCTCCCAACACTTGAGATTTCGATGTGATTTTCAAGGTGGACT-G-ACTGTCCGA-TTTTGTT-TCAAATATCGACATTTAAATGATTTTAC-TGCCCAGAC-TCAA-GATCAAATAGACTCATTGTGTTTGAA-CTTGAATATTTCAAAATAGAATGTAAATTTTTTCGCAAGAAACACATGTACATCTATAATATACATTCTATA-TTTTCATTA--AT----A--T-TTATCATAAATTT-ATGAATAATA--CATTCAA-GTAATATTGTCT---CTT------ACACTTTTTAA--AAAAT--TTA--AG----AAGTTT--GATC----------GATCA-AAATATA-------ACCTGGCGGATCTT---CG-----------------ATT-TTTCCGGGTTT------CA-GTAC--TTTTC--T--TGGTTGAGTGTAAAAACAACTGTAACACCGTA-ATTGATTATC-AGAAGACAAC-T-TTTTTAAAAAAGTT-TG------ATTATTGCT---CTGTAAAGT-CAATCACAGAGGAA-GATGAATCTATTGCATTAAT-TTTG-----TTAGAATC-AACATCAAA-GTTTGT---CAGC-CT--GTAGAT-TGTAT-CTGA---CTCAAGATC-ATTTTACtaagataagagggctctttattttttctaattaaattattcaaatcaggtgtaatgaatcaattaaggtaataaatttaaaccaaactggcacgtagaatggggtagggggcacctttttacaagttgttcattttctgttatttctacacataaatttttatatgcaaaataagatataatgccccggtcattgttaaaagtaggttttaaagataatttattgaccccattttctcccaacacttgagatttcgatgtgattttcaaggtggactgactgtccgattttgtttcaaatatcgacatttaaatgattttactgcccagactcaagatcaaatagactcattgtgtttgaacttgaatatttcaaaatagaatgtaaattttttcgcaagaaacacatgtacatctataatatacattctatattttcattaatatttatcataaatttatgaataatacattcaagtaatattgtctcttacactttttaaaaaatttaagaagtttgatcgatcaaaatataacctggcggatcttcgatttttccgggtttcagtacttttcttggttgagtgtaaaaacaactgtaacaccgtaattgattatcagaagacaacttttttaaaaaagtttgattattgctctgtaaagtcaatcacagaggaagatgaatctattgcattaattttgttagaatcaacatcaaagtttgtcagcctgtagattgtatctgactcaagatcattttacc
gi|10 : aagtgatcgtgaatcggacaccctgctctttcctatttgcatgttgatttcttccaactgtttcccctatggtatttggtgtcgcccaaaagagctcgaaattgtgaacttttttactcggatcaccttcttaaattcattcagatgcgataaacacccaacatccaaatttgtttgtaagtcggacacatttgattattgaatcatgcagacacgcaaattattatgaattatacaggcaggtaactttttgcaggtattctgcttacaaacattttataactttgtatgaattttcattaaaatcttaatttaataagataagagggctcAGTGATCTTGAGCCGAA-A---------CCCTTC-ACTC--T-CCCTTTCGTATTCAGATTATTTCCGACTGT---CTCCTG--AGGTATTTGGTGTTACTCGAAAGAGCTCGA--AAT--ATT-GTGTACTATTATCT-GCTC-GGATCAC--TG----------TGC-----------------------A-T-GCGAC---AAA------CTCCCAACAT--CGAAAT-T-CGGTCG-TAC-GTCGGACAC-ATTC-A-TTT---TCAG-T----CGGACACTG-------ATAT------TTATAA---------AGTCGGGTCGCA-TAT-A-TCGCTGGTAT--TCT-A---C---TGATAA-----------CAA-TTTCA-T-----------AA-T-------------TTACTT---TTTGTA-AACc
gi|11 : aTTGGTGTTGCCCGAAAGAGCACGA--AA---A-C-GTGCACTATTTTTT-GCCC-GGACCACCTTGGTATATATTCTACC-CCATAATT-CAT-TTA----GA-T-GCAAA---AAAAAAAAACTCCCAATAT--CTAAAT-T-CGT------------------ATTTGA-TAT---TGAG-T----CGGATGCTC-------GTAT----TATTATGAAT--TACACAACCAGGTAAC--TAA-A-TTAAACGTAT--TCT-GGTACATGTAACAA-----------TGT-TTTTTAT-----------AA-T-------------TTATTT---TTTTacgt
gi|12 : GATTTTTTTCGGCTATTT-CCCCTACATGGTATTTAGTGTTGCCGGATAGAGCTCGA--AA---T-T-GTATACTATTTTAT-GCTC-AGATCACACTGGCAT----TTTACC-TCATAATG-CAT-CTA----GA-T-GCGAT---CAACT----CTCTCAACAT--CAAAAT-T-CGTTCG-CAC-GTCGGCCAC-ACTTGA-TTT---TGAG-T----CATACACGC-------GTAT----TATTATGAAA--TATACAGGTAGGTAAC--T-T-A-TTGCAGGTGT--TTT-T---C---TGACAG-----------CTA-TCTTA-T-----------AA-T-------------TTACTT---TTTgtgaagatataagagtttttttttttaagttatatattt
gi|13 : --TACACAGCCAGGAAAC--TAA-A-TTACAAGTAT--ACT-A---A---TAAAAAAAAAATTAAATTTA-TTTTT-TGTAAACATAT-AA-TATAAGAGAG----TTCTTTA--TTTTTTTAACT-GAA----TGATTTAAAA--CCAGGTGTAA-CGAATCA-------CAAT-CAAGTT-ATACCAACC---AGGCATGAA-GAATTA--A----AGGAAACACATTTTT--AAAA--CGTTC-ATGTTCTGTTATTTCTGCATGTATgaga
gi|14 : TAT----TTTACCCTTATAATTACAA-TTAATCAGA-CAGCGAACAAAAA------CTCCTAA-ATTTCAGAAT-TGCGATCG-AAAAGATGGACAC-ATTTGA-TATCATTGAG-T----CGGACACTCACAGTGCGTATGTAGTAGTATGAATAATACAC-GCAGGGTAAT--TTA-T-TTACAAGTATATTCTTA---C---TGACAA-----------TTA-TTTTT-T-------------------------------TTT---TTTT
gi|15 : -TGTCT---TTT------AAACATTTTGGCAAAAGT--ATA--AG----AAGTAC--GGCC----------GATTA-AA-TATA-------ACATGGTGGATCTT---CG-----------------ATT-TGTTCGGCTTT------CAGGTAC--TTCTGTTAATTAAGTGATTGCAAAAATAAC-CTAACGTCGTTAATTGAACATA-CGAA-AAAAC-T-GTTT------AGTT-TA------ATTATTATT---CTATAT
gi|16 : TCTAACGTCATT-ATTGAATATA-CGAAGAAAAC-T-TTT-----AAAGTT-TA------ATTATTACT---CTAAACAGT-CAACCACAGACAAA-AACGAGTTTATTGCATTAAT-TTTG-----TT--AATT-A--ATTTAA-G-TTGT---TTAA-CT--TTAGAT-CGTGT-CCGA---CTCAAGATC-ACTT
gi|17 : AGAAAAA-T-TTTT----AA-GTT-TATTAATTACTATTACTTGGCTAAATAGTACAATCACAGACAAATGACGCATTT--TGC-TTA---TTTG-----TTCCAATG-AACACC-AA-G-TTGT---CCGA-CTAGTTAGAT-TGTGT-CCGAACCCTCAAGATCAACTTTA
gi|18 : tgAGAAAACAT-TTTT----AAAGTT-TA------ATTATTACT---GTAAATAGT-CAATCACAGACAAA-GACGAATTTATTGCATTAAT-TTTG-----TTCAAATG-AACACCAAA-G-TTGT---CCGA-CT--TTAGAT-TGTGT-CCGA---CTCAAGATC-ACTTTAC
gi|19 : tgAAAGCTAGAGTAA---G-C-CTG-GTTATTTTAT-ACTC-AGGTCATCTCGGTAT----TTTACC-TTATAATTACAT-TCA----GA-A-GCGAA---AAA------CTCCTAATTT--CAGAAT-T-CGATCG-AAA-GTTGGACAC-ATTTc
gi|2 : AGTGATCGTGAGTCGGACA---------CCCTAC-CCTT--T-CCTTTTCGTATACAGATTTCTTCCGACTGTTT-TCCCTA--TAGTAATTGGTGTTGCCCGAATGAGCTCGA--AA---A-C-GTGTACTATTTTTT-GCTC-GGATCACCTTGGTAT----TCTAC--------TT-CAT-TTA----GA-T-GCAAT---AAT------CTCCCAATAT--CTAAAT-T-CGTTCG-TAA-GTCGGACAC-ATTTGA-TAC---TGAG-T----CGGACGCTT-------ATAT----TATTATCAAT--TACACAGCCAGGTATT--TAA-A-TTACAAGTAT--TCT-G---T---TGACAA-----------TGGGTTCTT-T-----------GA-T-------------TTTTTT---TTTTTATAATT-AAA----TATTCTAAAA--CCAGATACAA-TGAATCG-------CAAT-AAAGTT-GTACCAACC---AGACATAAA-GAATGATGG----AGGAAACACATTTTT--ACAA--CGTTC-ATATTCTGTTATTTCTGCATGTGTAAAG-TTGATTCGAATTTTCAAATGCAAAATAAGTTATGTTGAGTTATCTCAT-TACAGACATTGTTAAA-AGTAGGTTT-AAAAAT-AACTTTTC-CCCTCATATATTGACCTCATTTTCTTCCAACGTTTAAAAGATATGTGTGATTTTCAATGTGGACT-G------------TGTGTA-TCAAATATCCACA---A------TTTAC-TGCCC-GAC-ACAA-GATCAAATTGACTAATTGCGTTTGAA-CTTAATTATTTCAAAGTGGAATATAAAGTTGT-CAAAAGAAACAT-------------ATATGCATTCTTTA-TTTCCAATG--ATG--AA--T-TTATCAAATATTT-GTAAATAACA--CATTCAA-GTAA-A-TGTCT---TCT------ACACATTTTGT--AAAGT--GTA--AG----AAGTTT--GATC----------GTTCA-AAATATA-------ACCTGGCGGATCTT---CG-----------------ATTCTTTTCGGGTTT------CA-GTAC--TTTTG--A--TGAGCGAATGTAAAAATAACTCTAATGTCGTT-ATTGAATATA-AGAAGAAAAC-T-TTTC----GAAGTT-CA------ATTATTACT---CTAAATAGT-CAATCACAGACAAA-GACGAATTCATTGCATTAAA-TTTG-----TTTAAATG-TACATCAAA-A-TTGT---CCAA-TT--TCAGAT-CGTGT-CCGA---CTTAAGATC-ACCTTAC
gi|20 : --AAAGTT-GTA--AG----AAGTTT--GATCTCCTCGAATCGATTG-AAATATATATTATAGCCTGCCGGATCTT---CG-----------------ATT-TTCCC-GGTT----------G-----TTCTG--A--TGGTCAAGTGTAAAAATt
gi|21 : cGAGTCGGAAATTAGGAAGCCCCAGT-TCTT--T-TCTTTTC-T-TGCAGATGTTTTCCTAATG-------CCA--TGGTATTTGATGTTGCCCGAGAGAGATCGA--AA---
gi|22 : ggAATGGAACATCAATTG-TTGT---CCGAACT--TTAGATTCGTGTTCCGA---CTCAATGCC-ACTTTAtt
gi|23 : ttatgcATG-ACGGTCAAA-G-TTGTAGTCCGA-CT--CATGAT-TGCGT-TTGA---CTCACGATC-ACTTTGCgcacta
gi|3 : ttttgcagtcgAA----TAATCTAAAA--CCAGGTGTAA-TGAATCA-------CAGT-AAAGTT-GCACCAACC---AGGCATGAA-AAATGAGGG----AGGCAACACATTTTT--ACAA--CGTTC-ATTTTCTTTTATTCCTGCATGTA-AAGA-T-GATTCGAATTTCCACATGCAAAATAAGATATGTTAAGTGATCTC-CATGCAGACATTGTTAAA-AGTAGGTTTTAAAAATTAA-TTTTCTCCCTCATGTATTTACCTCATTTTCTTCCAACGCTTGAAACATCTACATGAAT--CAAGGTGGACT-G-AG--TCCGA-CTTTGTA-TCAAATAGCGGCA----------TTTAC-TCTTC-GAC-TCAA-GATCAAATTGACTCATTGCGTTTGAA-CTTCAATATTTAAAAGTAGAATATAAAGTTTT-CAAAAGAAACAT-------------AT--GCATTCTATA-TTTACAATG--TTA--AA--T-GTATCAAATATGT-GTAAATAACA--CATTCAA-GTAA-AGTGTCT---TTT------ACACATTTTGC--AAAGT--ATA--GG----AAGTTT--GATC----------GGTCA-AAATATA-------TCCTGGCGGATCTT---CG-----------------ATT-TTTTCGGGTTT------CA-GTAC--TTTTG--A--TGAGCGAATGTAAAATAAACTCTAACGTCATT-ATTGAATAGA-AGAAAAAAAC-T-TTTTC---AAAGTT-TA------ATTATTACT---CTAAATAGT-CAATCATTGACAAA-GACGAATTTATTGCATTGAA-TTAG-----TTTAAATG-AACATCGAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCGA---CTCAAGTTC-ACTTTACcc
gi|4 : tttATTGTTAACCAGTAGGTTTAAACAAT-AA-TTGCT-CCCTCATATATTGACTTCATTTCTTTCCACGGCTTGAAT--TCGATGTGATTTTCAAG-TGGATTTGTG---TCCGAGCTTTGTAATCA----TT--------------TTTACCTGTCC-GACCTCAACGATCAAATTGACCCATTGCGTTTGAAACTT--ATATTTCAATATAGAATA--AAGTTTTTCAAAAGAAACAT-------------AT-T-CATTCTATAATTTTCAATA--ATC--GAATT-TTAATAAATATTTTGTAAATAACA--CATTCAAAGTAA-A-TGTCT---TTTTACACTACACATTTTGC--AAGGT--ATA--AG----AAGTTT--GATC----------GATCA-AAACATA-------ACCTGGCGGATCTT---CGATCTTTTTTTTCCTTCGATT-TTTCCGGGTTTTATTACTA-GTAC--TTTTG--A--TGAGCCAATGTCAAAATAAATCCAACATCATT-ATTGAATATC-AGAAGAAAAC-T-TTTA----AAAATT-TA------ATTATTACT---CGAAATAGT-CAGTCACAGGC---------ATTTATTGCATT-AA-TT-----------AATG-AACACCAAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCTA---CTCAAGATC-ACTTTA
gi|5 : tAGTGATCGTAAGTCAGACA---------CCCTAC-TCTT--T-CCTTTTCGTATGCAGATTTATTACGACTGTTT-CTCCTA--TAGTATTTAGTGCTGCTTGATAGAACTAGA--AATTGA-T-GTG---TATTTCAT-GCTC-AGATCACCATGGTAT----TTTACC-TCATAATG-CAT-CTA----GA-T-GCGAT---AAA------CTCCCAACAA--TGAAAT-T-CAATCT-TGA-TTCGGACAC-ATTTAA-TAT---TGAGTT----CAGACACTA-------GGAT----TATTATGAAT--TA----------TAACTTTAATACTTACAGGTAT--TTC-A---T---GGACAA-----------CTA-TTTTA-C-----------AA-T-------------TTACTT---TTT
gi|5 : aaTTTTATAACT-GAA----TAATTTAAAA--CCAGGTGTAA-GG-------------AAT-AGAGTT-GTACCTGCTATGAGGCACGTG-GAATAAGGGAGCTAGGGAACACTTTTTT--ACAA--CGTTC-ATTTTCCGTTATTTGTTCATG--TAAAGTT-GATTgtgaatgcgcatggatttttattaaaatcatatttaatatatataagagctagggtacttgaattttataactgaataatttaaaaccaggtgtaaggaatagagttgtacctgctatgaggcacgtggaataagggagctagggaacacttttttacaacgttcattttccgttatttgttcatgtaaagttgatt
gi|6 : aaagtgatcgtaagtcagacaccctactctttccttttcgtatgcagatttattacgactgtttctcctatagtatttagtgctgcttgatagaactagaaattgatgtgtatttcatgctcagatcaccatggtattttacctcataatgcatctagatgcgataaactcccaacaatgaaattcaatcttgattcggacacatttaatattgagttcagacactaggattattatgaattataactttaatacttacaggtatttcatggacaactattttacaatttactttttgtgaatgcgcatggatttttattaaaatcatatttaatatatataagagctagggtacttgaaTCGTGAGTCGGACA---------CCCTGCCTCTTATTGCCCTTTCGT-T-CAGATTTCATCCGACTGTTCGCCCCTA--TAGTATTTGGTGTTGCCCGAAAGAGCTCGA--AA---A-TTGTGT-CTCTTTT-T-GCTCCGGATC-CCTTGGTAT----TCTACC-TCAAAATT-CATCTTA----GACT-CCCAA---AAA------CTCCCAATAT--CTA--TCT-CGTTCGGTAA-GTCG-ACGCCATTTGA-TAT---TG-G-T----CGGACACTC-------ATAT----T-TTATGAAT--TACACAGCC-GGAAAC--TAA-A-TTACAAGTAT--ACT-A---A---TAAAAAAAATTACAT--TTA-TTTTT-TGTAAACATCATAA-TATAGAGAGTTTCTTTATTT---TTTTTA--ACTGAAA----TGATTTAAAAAACCAGGTGTAAACGAATCAA------CAATCAAAGTTTATAC-AACC---AGGCATGAAAGGATTAA------AGGAAACACATTTTTCTAAAA--CGTTCCATGTTCTGTTATTTCTGCATGTA
gi|7 : CGGAA---A------TTT-T-TATCC-AGT-TCAA-CATCAGATTG-TTCATTGCGTTTTAA-ATTGATTAC-----------------GGGTTTTCAAAATAAACCT-------------ATATGCACTCTGCA-TTTCAAATATCATTTTAA--TATTATCA-----TC-CTGAATCTGA--TATT--A---AA-A-TTTCTGGGTTT------AGGAACTTTGA--AAAGTTCACACCAGTTTTAATTTTTCGATC----------GATCATGAATATT-------ACGTGGCGGATCTTTGCTG-----------------ATT-TTCCCGGTTTT------CGCGTACTATTTTA--A--T
gi|7 : gAC-TATTTT----AA--TTGTA------ATCATTGTT---TTTTA-AGT-TA--CACAATGGAA-GATGGATTGATTGCAT-GAA-TTTGATATTTTTA-------CATCAAA-G-TCGC---CCGA-CT--CCAGAT-Ctgtaatcattgttttttaagttacacaatggaagatggattgattgcatgaatttgatatttttacatcaaagtcgcccgactccagatctt
gi|8 : gcggaaatttttatccagttcaacatcagattgttcattgcgttttaaattgattacgggttttcaaaataaacctatatgcactctgcatttcaaatatcattttaatattatcatcctgaatctgatattaaaatttctgggtttaggaactttgaaaagttcacaccagttttaatttttcgatcgatcatgaatattacgtggcggatctttgctgattttcccggttttcgcgtAGTGATCGTGAGTCGGATA---------CCCAGC-TCTT--T-CCTTTTCATATGCATATTTCTTCCGACTGTTT-TCCCTA--TAGTATTTGGTGTTGCCCGAAAGAATTCGA--AA---A-C-GTGTACTATTTTTTTGCTC-GGATCACTTTGGTAT----TCTACC-TCATAATT-CAT-TTA----GA-T-GCAAT---GAA------CTCCCAATAT--CTAAAT-T-CGTTCG-TAA-GTCAGACAC-ATTTGA-TGT---TGAG-T----CGGACGCTC-------ATAT----CATTATGAAT--TACACAGCCATGTAAC--TAA-A-TTACAAGTAT--TCT-G---T---TGACAA-----------TTA-TTTTTAT-----------AA-T-------------TTATTT---TTTtt
gi|9 : aT-GCAAATAATATACATATAA--TAA-----------TTT------ACACATTTTGC--AAAGT--ATA--AG----AAGTTT--GATC----------AATCA-AAATATA-------GCCTGGCTGATCTT---TG-----------------ATT-TTTCCGGGTTT------TA-TTAC--TTTTG--A--TTAGCGGATGTAAAAATAACTCAAACGTCGTT-ATTGAATATATATAAGAACAC-T-TTTC----AAAATT-TA------ATTATTACT---CTAAATAGT-CAATCACAGACAAA-GACGAATTTATTGCATTAAATTTTT-----TTTAAATG-AACATCAAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCGA---CTCAAGATC-ACTTTAgtgaacatataagataa
Alignments
lowQualScore : 222222222 1111111 111111 1111111 111111111 66666666666666666666666666666666666666666666666666 111 11 1111 2222222 111 2222222 22222222 3333333 33333 1 1 1 2222 11 1 44444 11 1 44444444444444 1 4444444444444 1 11 2222222 11 111 111 111111 11 1111 2222222222 1111111 33333333333333333 111111111 11111 111111 11111
lowQualScore : 3 222222222 5 77 5 5 3 0 5 66 55 7777777 77 5 4 4 0 8888 1 4 3 8 4 8888 4 4 8888 777777 3 55 1 4 4 1 44 4 4 4 777 4 9999 0 4444444 9999 55 0 1 99 66666 0 55 888888888 11111111111111111111111111111111111111111111111111 000 66 6 2222 99 88 8888888 6 6 111 0 6 1 2222222 99 99 6 1 22222222 1 3333333 33333 0 0 9 0 0 0000 0 44 1 2 3 2 0 44444 00 0 3 44444444444444 0 8 8 8 8 0 8 8 1 0 22 66 0 4444444444444 0 3 8 1 11 0000000 8 6 1 6 99 1 33 777 000 666666 777 11 66 0000 66 1111111111 5 6666666 888 55555555555555555 5 777777777 66 88888 5 5 4 4 44444 0 4 111111 777 4 4 66 11111 66 3 3 3 666 3 55 3 4 777 4
lowQualScore : . ......... . .. . . . . . .. .. ....... .. . . . . .... . . . . . .... . . .... ...... . .. . . . . .. . . . ... . .... . ....... .... .. . . .. ..... . .. ......... .................................................. ... .. . .... .. .. ....... . . ... . . . ....... .. .. . . ........ . ....... ..... . . . . . .... . .. . . . . . ..... .. . . .............. . . . . . . . . . . .. .. . ............. . . . . .. ....... . . . . .. . .. ... ... ...... ... .. .. .... .. .......... . ....... ... ................. . ......... .. ..... . . . . ..... . . ...... ... . . .. ..... .. . . . ... . .. . . ... .
lowQualScore : 0 999999999 7 99 7 0 0 1 0 99 55 2222222 22 3 4 4 1 5555 4 0 3 0 0 5555 0 0 0000 000000 0 55 0 0 0 2 11 0 0 4 888 4 4444 7 4444444 4444 55 7 3 55 44444 5 55 333333333 22222222222222222222222222222222222222222222222222 000 99 7 1111 22 88 3333333 7 7 777 7 7 0 8888888 22 22 7 0 66666666 0 0000000 00000 7 0 8 0 0 2222 8 22 0 0 2 5 0 55555 22 0 2 88888888888888 8 0 0 0 0 8 0 2 4 8 44 22 6 0000000000000 6 2 0 4 00 6666666 0 0 0 7 22 0 33 333 000 444444 999 99 99 6666 99 9999999999 0 2222222 888 00000000000000000 0 444444444 99 00000 7 7 0 0 00000 8 0 555555 000 4 4 88 11111 00 6 6 6 444 6 00 6 0 000 0
consensus : AGTGATCGTGAGTCGGACA---------CCCTGC-TCTT--T-CCTTTTCGTATGCAGATTTCTTCCGACTGTTT-CCCCTA--TGGTATTTGGTGTTGCCCGAAAGAGCTCGA--AA---A-C-GTGTACTATTTTNT-GCTC-GGATCACCTTGGTAT----TCTACC-TCATAATT-CAT-TTA----GA-T-GCGAN---AAA------CTCCCAACAT--CNAAAT-T-CGTTCG-TAA-GTCGGACAC-ATTTGA-TAT---TGAG-T----CGGACGCTC-------GTAT----TATTATGAAT--TACACAGCCAGGTAAC--TAA-A-TTACAGGTAT--TCT-G---C---TGACAA-----------TTA-TTTTT-T-----------AA-T-------------TTATTT---TTTTTATAACT-AAA----TAATTTAAAA--CCAGGTGTAA-CGAATCA-------CAAT-AAAGTT-GTACCAACC---AGGCACGAA-GAATGAGGG----AGGAAACACATTTTT--ACAA--CGTTC-ATNTTCTGTTATTTCTGCATGTATAAAG-T-GATTCGAATTTTCANATGCAAAATAAGATATGTTGAGT-ATCTC-C-TGCGGACATTGTTAAA-AGTAGGTTTTAAAAAT-AA-TTTTC-CCCTCATATATTGACCTCATTTTCTTCCAACGCTTGAAANATCNACGTGATTTTCAAGGTGGACT-G-A---TCCGA-CTTTGTA-TCAAATATCGGCA---A------TTTAC-TGTCC-GAC-TCAA-GATCAAATTGACTCATTGCGTTTGAA-CTTGAATATTTCAAAGTAGAATATAAAGTTTTTCAAAAGAAACAT-------------ATATGCATTCTATA-TTTCCAATA--ATN--AA--T-TTATCAAATATTT-GTAAATAACA--CATTCAA-GTAA-A-TGTCT---TTT------ACACATTTTGN--AAAGT--ATA--AG----AAGTTT--GATC----------GATCA-AAATATA-------ACCTGGCGGATCTT---CG-----------------ATT-TTTCCGGGTTT------CA-GTAC--TTTTG--A--TGAGCGAATGTAAAAATAACTCTAACGTCGTT-ATTGAATATA-AGAAGAAAAC-T-TTTT----AAAGTT-TA------ATTATTACT---CTAAATAGT-CAATCACAGACAAA-GACGAATTTATTGCATTAAA-TTTG-----TTTAAATG-AACATCAAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCGA---CTCAAGATC-ACTTTAC
Reference ( family-7343 ) : AGTGATCGTGAGTCGGACA---------CCCTGC-TCTT--T-CCTTTTCGTATGCAGATTTCTTCCGACTGTTT-CCCCTA--TGGTATTTGGTGTTGCCCGAAAGAGCTCGA--AA---A-C-GTGTACTATTTTNT-GCTC-GGATCACCTTGGTAT----TCTACC-TCATAATT-CAT-TTA----GA-T-GCGAN---AAA------CTCCCAACAT--CNAAAT-T-CGTTCG-TAA-GTCGGACAC-ATTTGA-TAT---TGAG-T----CGGACGCTC-------GTAT----TATTATGAAT--TACACAGCCAGGTAAC--TAA-A-TTACAGGTAT--TCT-G---C---TGACAA-----------TTA-TTTTT-T-----------AA-T-------------TTATTT---TTTTTATAACT-AAA----TAATTTAAAA--CCAGGTGTAA-CGAATCA-------CAAT-AAAGTT-GTACCAACC---AGGCACGAA-GAATGAGGG----AGGAAACACATTTTT--ACAA--CGTTC-ATNTTCTGTTATTTCTGCATGTATAAAG-T-GATTCGAATTTTCANATGCAAAATAAGATATGTTGAGT-ATCTC-C-TGCGGACATTGTTAAA-AGTAGGTTTTAAAAAT-AA-TTTTC-CCCTCATATATTGACCTCATTTTCTTCCAACGCTTGAAANATCNACGTGATTTTCAAGGTGGACT-G-A---TCCGA-CTTTGTA-TCAAATATCGGCA---A------TTTAC-TGTCC-GAC-TCAA-GATCAAATTGACTCATTGCGTTTGAA-CTTGAATATTTCAAAGTAGAATATAAAGTTTTTCAAAAGAAACAT-------------ATATGCATTCTATA-TTTCCAATA--ATN--AA--T-TTATCAAATATTT-GTAAATAACA--CATTCAA-GTAA-A-TGTCT---TTT------ACACATTTTGN--AAAGT--ATA--AG----AAGTTT--GATC----------GATCA-AAATATA-------ACCTGGCGGATCTT---CG-----------------ATT-TTTCCGGGTTT------CA-GTAC--TTTTG--A--TGAGCGAATGTAAAAATAACTCTAACGTCGTT-ATTGAATATA-AGAAGAAAAC-T-TTTT----AAAGTT-TA------ATTATTACT---CTAAATAGT-CAATCACAGACAAA-GACGAATTTATTGCATTAAA-TTTG-----TTTAAATG-AACATCAAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCGA---CTCAAGATC-ACTTTAC
gi|1 : AGTGATCGTGAATCGGACA---------CCCTGC-TCTT--T-CCTATTTGCATGTTGATTTCTTCCAACTGTTT-CCCCTA--TGGTATTTGGTGTCGCCCAAAAGAGCTCGA--AA---T-T-GTGAAC--TTTTTT-ACTC-GGATCACCTT--------------C-TTA-AATT-CAT-TCA----GA-T-GCGAT---AAA------CACCCAACAT--CCAAAT-T-TGTTTG-TAA-GTCGGACAC-ATTTGATTAT---TGAA-TCATGCAGACACGC-------AAAT----TATTATGAAT--TATACAGGCAGGTAAC--T-T-T-TTGCAGGTAT--TCT-G---C---TTACAA-----------ACA-TTTTA-T-----------AACT-------------TTGTATGAATTTTCAT---T-AAAATCTTAATTTAA
gi|1 : a-T-------------TTATTT---TTTCTA--ATT-AAA----TTATTCAAA---TCAGGTGTAA-TGAATCAATTAAGGTAAT-AAATTT-AAACCAAAC---TGGCACGTA-GAATGGGGT----AGGGGGCACCTTTTT--ACAAGTTGTTC-ATTTTCTGTTATTTCTACACATA--------------AATTTTTATATGCAAAATAAGATATA-------ATGCC-C---CGGTCATTGTTAAA-AGTAGGTTTTAAAGAT-AA-TT------------TATTGACCCCATTTTCTCCCAACACTTGAGATTTCGATGTGATTTTCAAGGTGGACT-G-ACTGTCCGA-TTTTGTT-TCAAATATCGACATTTAAATGATTTTAC-TGCCCAGAC-TCAA-GATCAAATAGACTCATTGTGTTTGAA-CTTGAATATTTCAAAATAGAATGTAAATTTTTTCGCAAGAAACACATGTACATCTATAATATACATTCTATA-TTTTCATTA--AT----A--T-TTATCATAAATTT-ATGAATAATA--CATTCAA-GTAATATTGTCT---CTT------ACACTTTTTAA--AAAAT--TTA--AG----AAGTTT--GATC----------GATCA-AAATATA-------ACCTGGCGGATCTT---CG-----------------ATT-TTTCCGGGTTT------CA-GTAC--TTTTC--T--TGGTTGAGTGTAAAAACAACTGTAACACCGTA-ATTGATTATC-AGAAGACAAC-T-TTTTTAAAAAAGTT-TG------ATTATTGCT---CTGTAAAGT-CAATCACAGAGGAA-GATGAATCTATTGCATTAAT-TTTG-----TTAGAATC-AACATCAAA-GTTTGT---CAGC-CT--GTAGAT-TGTAT-CTGA---CTCAAGATC-ATTTTACtaagataagagggctctttattttttctaattaaattattcaaatcaggtgtaatgaatcaattaaggtaataaatttaaaccaaactggcacgtagaatggggtagggggcacctttttacaagttgttcattttctgttatttctacacataaatttttatatgcaaaataagatataatgccccggtcattgttaaaagtaggttttaaagataatttattgaccccattttctcccaacacttgagatttcgatgtgattttcaaggtggactgactgtccgattttgtttcaaatatcgacatttaaatgattttactgcccagactcaagatcaaatagactcattgtgtttgaacttgaatatttcaaaatagaatgtaaattttttcgcaagaaacacatgtacatctataatatacattctatattttcattaatatttatcataaatttatgaataatacattcaagtaatattgtctcttacactttttaaaaaatttaagaagtttgatcgatcaaaatataacctggcggatcttcgatttttccgggtttcagtacttttcttggttgagtgtaaaaacaactgtaacaccgtaattgattatcagaagacaacttttttaaaaaagtttgattattgctctgtaaagtcaatcacagaggaagatgaatctattgcattaattttgttagaatcaacatcaaagtttgtcagcctgtagattgtatctgactcaagatcattttacc
gi|10 : aagtgatcgtgaatcggacaccctgctctttcctatttgcatgttgatttcttccaactgtttcccctatggtatttggtgtcgcccaaaagagctcgaaattgtgaacttttttactcggatcaccttcttaaattcattcagatgcgataaacacccaacatccaaatttgtttgtaagtcggacacatttgattattgaatcatgcagacacgcaaattattatgaattatacaggcaggtaactttttgcaggtattctgcttacaaacattttataactttgtatgaattttcattaaaatcttaatttaataagataagagggctcAGTGATCTTGAGCCGAA-A---------CCCTTC-ACTC--T-CCCTTTCGTATTCAGATTATTTCCGACTGT---CTCCTG--AGGTATTTGGTGTTACTCGAAAGAGCTCGA--AAT--ATT-GTGTACTATTATCT-GCTC-GGATCAC--TG----------TGC-----------------------A-T-GCGAC---AAA------CTCCCAACAT--CGAAAT-T-CGGTCG-TAC-GTCGGACAC-ATTC-A-TTT---TCAG-T----CGGACACTG-------ATAT------TTATAA---------AGTCGGGTCGCA-TAT-A-TCGCTGGTAT--TCT-A---C---TGATAA-----------CAA-TTTCA-T-----------AA-T-------------TTACTT---TTTGTA-AACc
gi|11 : aTTGGTGTTGCCCGAAAGAGCACGA--AA---A-C-GTGCACTATTTTTT-GCCC-GGACCACCTTGGTATATATTCTACC-CCATAATT-CAT-TTA----GA-T-GCAAA---AAAAAAAAACTCCCAATAT--CTAAAT-T-CGT------------------ATTTGA-TAT---TGAG-T----CGGATGCTC-------GTAT----TATTATGAAT--TACACAACCAGGTAAC--TAA-A-TTAAACGTAT--TCT-GGTACATGTAACAA-----------TGT-TTTTTAT-----------AA-T-------------TTATTT---TTTTacgt
gi|12 : GATTTTTTTCGGCTATTT-CCCCTACATGGTATTTAGTGTTGCCGGATAGAGCTCGA--AA---T-T-GTATACTATTTTAT-GCTC-AGATCACACTGGCAT----TTTACC-TCATAATG-CAT-CTA----GA-T-GCGAT---CAACT----CTCTCAACAT--CAAAAT-T-CGTTCG-CAC-GTCGGCCAC-ACTTGA-TTT---TGAG-T----CATACACGC-------GTAT----TATTATGAAA--TATACAGGTAGGTAAC--T-T-A-TTGCAGGTGT--TTT-T---C---TGACAG-----------CTA-TCTTA-T-----------AA-T-------------TTACTT---TTTgtgaagatataagagtttttttttttaagttatatattt
gi|13 : --TACACAGCCAGGAAAC--TAA-A-TTACAAGTAT--ACT-A---A---TAAAAAAAAAATTAAATTTA-TTTTT-TGTAAACATAT-AA-TATAAGAGAG----TTCTTTA--TTTTTTTAACT-GAA----TGATTTAAAA--CCAGGTGTAA-CGAATCA-------CAAT-CAAGTT-ATACCAACC---AGGCATGAA-GAATTA--A----AGGAAACACATTTTT--AAAA--CGTTC-ATGTTCTGTTATTTCTGCATGTATgaga
gi|14 : TAT----TTTACCCTTATAATTACAA-TTAATCAGA-CAGCGAACAAAAA------CTCCTAA-ATTTCAGAAT-TGCGATCG-AAAAGATGGACAC-ATTTGA-TATCATTGAG-T----CGGACACTCACAGTGCGTATGTAGTAGTATGAATAATACAC-GCAGGGTAAT--TTA-T-TTACAAGTATATTCTTA---C---TGACAA-----------TTA-TTTTT-T-------------------------------TTT---TTTT
gi|15 : -TGTCT---TTT------AAACATTTTGGCAAAAGT--ATA--AG----AAGTAC--GGCC----------GATTA-AA-TATA-------ACATGGTGGATCTT---CG-----------------ATT-TGTTCGGCTTT------CAGGTAC--TTCTGTTAATTAAGTGATTGCAAAAATAAC-CTAACGTCGTTAATTGAACATA-CGAA-AAAAC-T-GTTT------AGTT-TA------ATTATTATT---CTATAT
gi|16 : TCTAACGTCATT-ATTGAATATA-CGAAGAAAAC-T-TTT-----AAAGTT-TA------ATTATTACT---CTAAACAGT-CAACCACAGACAAA-AACGAGTTTATTGCATTAAT-TTTG-----TT--AATT-A--ATTTAA-G-TTGT---TTAA-CT--TTAGAT-CGTGT-CCGA---CTCAAGATC-ACTT
gi|17 : AGAAAAA-T-TTTT----AA-GTT-TATTAATTACTATTACTTGGCTAAATAGTACAATCACAGACAAATGACGCATTT--TGC-TTA---TTTG-----TTCCAATG-AACACC-AA-G-TTGT---CCGA-CTAGTTAGAT-TGTGT-CCGAACCCTCAAGATCAACTTTA
gi|18 : tgAGAAAACAT-TTTT----AAAGTT-TA------ATTATTACT---GTAAATAGT-CAATCACAGACAAA-GACGAATTTATTGCATTAAT-TTTG-----TTCAAATG-AACACCAAA-G-TTGT---CCGA-CT--TTAGAT-TGTGT-CCGA---CTCAAGATC-ACTTTAC
gi|19 : tgAAAGCTAGAGTAA---G-C-CTG-GTTATTTTAT-ACTC-AGGTCATCTCGGTAT----TTTACC-TTATAATTACAT-TCA----GA-A-GCGAA---AAA------CTCCTAATTT--CAGAAT-T-CGATCG-AAA-GTTGGACAC-ATTTc
gi|2 : AGTGATCGTGAGTCGGACA---------CCCTAC-CCTT--T-CCTTTTCGTATACAGATTTCTTCCGACTGTTT-TCCCTA--TAGTAATTGGTGTTGCCCGAATGAGCTCGA--AA---A-C-GTGTACTATTTTTT-GCTC-GGATCACCTTGGTAT----TCTAC--------TT-CAT-TTA----GA-T-GCAAT---AAT------CTCCCAATAT--CTAAAT-T-CGTTCG-TAA-GTCGGACAC-ATTTGA-TAC---TGAG-T----CGGACGCTT-------ATAT----TATTATCAAT--TACACAGCCAGGTATT--TAA-A-TTACAAGTAT--TCT-G---T---TGACAA-----------TGGGTTCTT-T-----------GA-T-------------TTTTTT---TTTTTATAATT-AAA----TATTCTAAAA--CCAGATACAA-TGAATCG-------CAAT-AAAGTT-GTACCAACC---AGACATAAA-GAATGATGG----AGGAAACACATTTTT--ACAA--CGTTC-ATATTCTGTTATTTCTGCATGTGTAAAG-TTGATTCGAATTTTCAAATGCAAAATAAGTTATGTTGAGTTATCTCAT-TACAGACATTGTTAAA-AGTAGGTTT-AAAAAT-AACTTTTC-CCCTCATATATTGACCTCATTTTCTTCCAACGTTTAAAAGATATGTGTGATTTTCAATGTGGACT-G------------TGTGTA-TCAAATATCCACA---A------TTTAC-TGCCC-GAC-ACAA-GATCAAATTGACTAATTGCGTTTGAA-CTTAATTATTTCAAAGTGGAATATAAAGTTGT-CAAAAGAAACAT-------------ATATGCATTCTTTA-TTTCCAATG--ATG--AA--T-TTATCAAATATTT-GTAAATAACA--CATTCAA-GTAA-A-TGTCT---TCT------ACACATTTTGT--AAAGT--GTA--AG----AAGTTT--GATC----------GTTCA-AAATATA-------ACCTGGCGGATCTT---CG-----------------ATTCTTTTCGGGTTT------CA-GTAC--TTTTG--A--TGAGCGAATGTAAAAATAACTCTAATGTCGTT-ATTGAATATA-AGAAGAAAAC-T-TTTC----GAAGTT-CA------ATTATTACT---CTAAATAGT-CAATCACAGACAAA-GACGAATTCATTGCATTAAA-TTTG-----TTTAAATG-TACATCAAA-A-TTGT---CCAA-TT--TCAGAT-CGTGT-CCGA---CTTAAGATC-ACCTTAC
gi|20 : --AAAGTT-GTA--AG----AAGTTT--GATCTCCTCGAATCGATTG-AAATATATATTATAGCCTGCCGGATCTT---CG-----------------ATT-TTCCC-GGTT----------G-----TTCTG--A--TGGTCAAGTGTAAAAATt
gi|21 : cGAGTCGGAAATTAGGAAGCCCCAGT-TCTT--T-TCTTTTC-T-TGCAGATGTTTTCCTAATG-------CCA--TGGTATTTGATGTTGCCCGAGAGAGATCGA--AA---
gi|22 : ggAATGGAACATCAATTG-TTGT---CCGAACT--TTAGATTCGTGTTCCGA---CTCAATGCC-ACTTTAtt
gi|23 : ttatgcATG-ACGGTCAAA-G-TTGTAGTCCGA-CT--CATGAT-TGCGT-TTGA---CTCACGATC-ACTTTGCgcacta
gi|3 : ttttgcagtcgAA----TAATCTAAAA--CCAGGTGTAA-TGAATCA-------CAGT-AAAGTT-GCACCAACC---AGGCATGAA-AAATGAGGG----AGGCAACACATTTTT--ACAA--CGTTC-ATTTTCTTTTATTCCTGCATGTA-AAGA-T-GATTCGAATTTCCACATGCAAAATAAGATATGTTAAGTGATCTC-CATGCAGACATTGTTAAA-AGTAGGTTTTAAAAATTAA-TTTTCTCCCTCATGTATTTACCTCATTTTCTTCCAACGCTTGAAACATCTACATGAAT--CAAGGTGGACT-G-AG--TCCGA-CTTTGTA-TCAAATAGCGGCA----------TTTAC-TCTTC-GAC-TCAA-GATCAAATTGACTCATTGCGTTTGAA-CTTCAATATTTAAAAGTAGAATATAAAGTTTT-CAAAAGAAACAT-------------AT--GCATTCTATA-TTTACAATG--TTA--AA--T-GTATCAAATATGT-GTAAATAACA--CATTCAA-GTAA-AGTGTCT---TTT------ACACATTTTGC--AAAGT--ATA--GG----AAGTTT--GATC----------GGTCA-AAATATA-------TCCTGGCGGATCTT---CG-----------------ATT-TTTTCGGGTTT------CA-GTAC--TTTTG--A--TGAGCGAATGTAAAATAAACTCTAACGTCATT-ATTGAATAGA-AGAAAAAAAC-T-TTTTC---AAAGTT-TA------ATTATTACT---CTAAATAGT-CAATCATTGACAAA-GACGAATTTATTGCATTGAA-TTAG-----TTTAAATG-AACATCGAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCGA---CTCAAGTTC-ACTTTACcc
gi|4 : tttATTGTTAACCAGTAGGTTTAAACAAT-AA-TTGCT-CCCTCATATATTGACTTCATTTCTTTCCACGGCTTGAAT--TCGATGTGATTTTCAAG-TGGATTTGTG---TCCGAGCTTTGTAATCA----TT--------------TTTACCTGTCC-GACCTCAACGATCAAATTGACCCATTGCGTTTGAAACTT--ATATTTCAATATAGAATA--AAGTTTTTCAAAAGAAACAT-------------AT-T-CATTCTATAATTTTCAATA--ATC--GAATT-TTAATAAATATTTTGTAAATAACA--CATTCAAAGTAA-A-TGTCT---TTTTACACTACACATTTTGC--AAGGT--ATA--AG----AAGTTT--GATC----------GATCA-AAACATA-------ACCTGGCGGATCTT---CGATCTTTTTTTTCCTTCGATT-TTTCCGGGTTTTATTACTA-GTAC--TTTTG--A--TGAGCCAATGTCAAAATAAATCCAACATCATT-ATTGAATATC-AGAAGAAAAC-T-TTTA----AAAATT-TA------ATTATTACT---CGAAATAGT-CAGTCACAGGC---------ATTTATTGCATT-AA-TT-----------AATG-AACACCAAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCTA---CTCAAGATC-ACTTTA
gi|5 : tAGTGATCGTAAGTCAGACA---------CCCTAC-TCTT--T-CCTTTTCGTATGCAGATTTATTACGACTGTTT-CTCCTA--TAGTATTTAGTGCTGCTTGATAGAACTAGA--AATTGA-T-GTG---TATTTCAT-GCTC-AGATCACCATGGTAT----TTTACC-TCATAATG-CAT-CTA----GA-T-GCGAT---AAA------CTCCCAACAA--TGAAAT-T-CAATCT-TGA-TTCGGACAC-ATTTAA-TAT---TGAGTT----CAGACACTA-------GGAT----TATTATGAAT--TA----------TAACTTTAATACTTACAGGTAT--TTC-A---T---GGACAA-----------CTA-TTTTA-C-----------AA-T-------------TTACTT---TTT
gi|5 : aaTTTTATAACT-GAA----TAATTTAAAA--CCAGGTGTAA-GG-------------AAT-AGAGTT-GTACCTGCTATGAGGCACGTG-GAATAAGGGAGCTAGGGAACACTTTTTT--ACAA--CGTTC-ATTTTCCGTTATTTGTTCATG--TAAAGTT-GATTgtgaatgcgcatggatttttattaaaatcatatttaatatatataagagctagggtacttgaattttataactgaataatttaaaaccaggtgtaaggaatagagttgtacctgctatgaggcacgtggaataagggagctagggaacacttttttacaacgttcattttccgttatttgttcatgtaaagttgatt
gi|6 : aaagtgatcgtaagtcagacaccctactctttccttttcgtatgcagatttattacgactgtttctcctatagtatttagtgctgcttgatagaactagaaattgatgtgtatttcatgctcagatcaccatggtattttacctcataatgcatctagatgcgataaactcccaacaatgaaattcaatcttgattcggacacatttaatattgagttcagacactaggattattatgaattataactttaatacttacaggtatttcatggacaactattttacaatttactttttgtgaatgcgcatggatttttattaaaatcatatttaatatatataagagctagggtacttgaaTCGTGAGTCGGACA---------CCCTGCCTCTTATTGCCCTTTCGT-T-CAGATTTCATCCGACTGTTCGCCCCTA--TAGTATTTGGTGTTGCCCGAAAGAGCTCGA--AA---A-TTGTGT-CTCTTTT-T-GCTCCGGATC-CCTTGGTAT----TCTACC-TCAAAATT-CATCTTA----GACT-CCCAA---AAA------CTCCCAATAT--CTA--TCT-CGTTCGGTAA-GTCG-ACGCCATTTGA-TAT---TG-G-T----CGGACACTC-------ATAT----T-TTATGAAT--TACACAGCC-GGAAAC--TAA-A-TTACAAGTAT--ACT-A---A---TAAAAAAAATTACAT--TTA-TTTTT-TGTAAACATCATAA-TATAGAGAGTTTCTTTATTT---TTTTTA--ACTGAAA----TGATTTAAAAAACCAGGTGTAAACGAATCAA------CAATCAAAGTTTATAC-AACC---AGGCATGAAAGGATTAA------AGGAAACACATTTTTCTAAAA--CGTTCCATGTTCTGTTATTTCTGCATGTA
gi|7 : CGGAA---A------TTT-T-TATCC-AGT-TCAA-CATCAGATTG-TTCATTGCGTTTTAA-ATTGATTAC-----------------GGGTTTTCAAAATAAACCT-------------ATATGCACTCTGCA-TTTCAAATATCATTTTAA--TATTATCA-----TC-CTGAATCTGA--TATT--A---AA-A-TTTCTGGGTTT------AGGAACTTTGA--AAAGTTCACACCAGTTTTAATTTTTCGATC----------GATCATGAATATT-------ACGTGGCGGATCTTTGCTG-----------------ATT-TTCCCGGTTTT------CGCGTACTATTTTA--A--T
gi|7 : gAC-TATTTT----AA--TTGTA------ATCATTGTT---TTTTA-AGT-TA--CACAATGGAA-GATGGATTGATTGCAT-GAA-TTTGATATTTTTA-------CATCAAA-G-TCGC---CCGA-CT--CCAGAT-Ctgtaatcattgttttttaagttacacaatggaagatggattgattgcatgaatttgatatttttacatcaaagtcgcccgactccagatctt
gi|8 : gcggaaatttttatccagttcaacatcagattgttcattgcgttttaaattgattacgggttttcaaaataaacctatatgcactctgcatttcaaatatcattttaatattatcatcctgaatctgatattaaaatttctgggtttaggaactttgaaaagttcacaccagttttaatttttcgatcgatcatgaatattacgtggcggatctttgctgattttcccggttttcgcgtAGTGATCGTGAGTCGGATA---------CCCAGC-TCTT--T-CCTTTTCATATGCATATTTCTTCCGACTGTTT-TCCCTA--TAGTATTTGGTGTTGCCCGAAAGAATTCGA--AA---A-C-GTGTACTATTTTTTTGCTC-GGATCACTTTGGTAT----TCTACC-TCATAATT-CAT-TTA----GA-T-GCAAT---GAA------CTCCCAATAT--CTAAAT-T-CGTTCG-TAA-GTCAGACAC-ATTTGA-TGT---TGAG-T----CGGACGCTC-------ATAT----CATTATGAAT--TACACAGCCATGTAAC--TAA-A-TTACAAGTAT--TCT-G---T---TGACAA-----------TTA-TTTTTAT-----------AA-T-------------TTATTT---TTTtt
gi|9 : aT-GCAAATAATATACATATAA--TAA-----------TTT------ACACATTTTGC--AAAGT--ATA--AG----AAGTTT--GATC----------AATCA-AAATATA-------GCCTGGCTGATCTT---TG-----------------ATT-TTTCCGGGTTT------TA-TTAC--TTTTG--A--TTAGCGGATGTAAAAATAACTCAAACGTCGTT-ATTGAATATATATAAGAACAC-T-TTTC----AAAATT-TA------ATTATTACT---CTAAATAGT-CAATCACAGACAAA-GACGAATTTATTGCATTAAATTTTT-----TTTAAATG-AACATCAAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCGA---CTCAAGATC-ACTTTAgtgaacatataagataa
blockSeqs : C TTAGGAAGC C AT G A T G CA GT TTGAT TA C T C ATAT C C T A C ATCA C A ACAA AAAAAA C TT G C G G GT A C . CAT T . ACAGTGC GTAG AA G TT AATAC AT GGTACATG AAATTACATTTATTTTTTGTAAACATCATAATATAGAGAGTTTCT A TA G . AA AC A C T ATG A T GGGAGCT CT . C G TAAAGTT A TTGAGTT ATTA C T T C TTCT GA T T T G T AG GC A A CACAA C . C C A A T AG TA T . A G A C TC CGAAT A A T T TA C AG AG GGG TACACT GCA TC CC TTTT TC TCCTCGAATC T TATTATA TGC ATCTTTTTTTTCCTTCG C TATTACTA TA TTAAT A T A A TC G TTAATT TGG A T AT ATATT CC G T . AGT A AG T T ACC A
blockSeqs : A . . . . A A . . . TATT CA T . . . T . T A . . . . C CT T . T . . T T . . . . . . . . . A A ATA . TAC AAAAATTAAATTTATTTTTTGTAAACATATAATATAAGAGAG . TA . . . C . . . . . G TGG . . . A TAAAGTT C TTAAGTG CATG . A . . TTC CA T C T G . TG C . A GGAAA . . . . . C A AG TA T . A G . A . TTTAA . A T . . C G A . . T T . . . . . . . . . CAG . A . . . . T . . . . . T . CA . . . . . . . . . .
blockSeqs : C . . . . A G . . . ATT TA A . . . T . T . . . . . A . C . A . . T C . . . . . . . . . A . AAA . AC TGTTTTTTATAAT . TA . . . T . . . . . G GGG . . . T AAGAT . . . . GCT . G T . . . . . . . GGCA . . . . . G A TA . . . . G . T . GAA . A T . . C G A . . C . . . . . . . . . . CGC . A . . . . T . . . . . T . TA . . . . . . . . . .
blockSeqs : C . . . . A G . . . AC TA A . . . T . T . . . . . T . T . A . . A A . . . . . . . . . A . AAA . TC TGGGTTCTTTGAT . A . . . T . . . . . A A . . . T . . . . . . . T . . . . . . . C . AAA . . . . . T . A . . C . . . . . . . . . . CA . A . . . . T . . . . . A . TA . . . . . . . . . .
blockSeqs : T . . . . . G . . . TT TA T . . . C . T . . . . . A . T . A . . A A . . . . . . . . . G . TAT . AA TTATTTTTATAAT . . . . . G . . . . . T A . . . G . . . . . . . A . . . . . . . . . . CA . A . . . . C . . . . . A . TA . . . . . . . . . .
blockSeqs : . . . . . . . . . . GC G A . . . T . A . . . . . T . C . T . . T T . . . . . . . . . A . AAA . GT CAATTTCATAAT . . . . . C . . . . . . . . . . TA . A . . . . A . . . . . A . TA . . . . . . . . . .
blockSeqs : . . . AC T T . . . C . T . . . . . T . T . G . . A T . . . . . . . . . A . AAA . AT CTATCTTATAAT . . . . . . . . . . . . . A . . T . . . . . A . . . . . . . . . . . .
blockSeqs : . AC . . . . . C . . . . . . . A . T . T . . T T . . . . . . . . . . . AAA . AA CTATTTTACAAT . . . C . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . T . . . T . . T . . . . . . TA . GT TTATTTTTT . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : **** AAA** TTATTTTTATAAT************************************* *** TA **** ******* GG***** ** GCA*********** ************* NAA**** A** T****
originalCons : AGTGATCGTGAGTCGGACA---------CCCTGC-TCTT--T-CCTTTTCGTATGCAGATTTCTTCCGACTGTTT-CCCCTA--TGGTATTTGGTGTTGCCCGAAAGAGCTCGA--AA---A-C-GTGTACTATTTTNT-GCTC-GGATCACCTTGGTAT----TCTACC-TCATAATT-CAT-TTA----GA-T-GCGAN---AAA------CTCCCAACAT--CNAAAT-T-CGTTCG-TAA-GTCGGACAC-ATTTGA-TAT---TGAG-T----CGGACGCTC-------GTAT----TATTATGAAT--TACACAGCCAGGTAAC--TAA-A-TTACAGGTAT--TCT-G---C---TGACAA-----------TTA-TTTTT-T-----------AA-T-------------TTATTT---TTTTTATAACT-AAA----TAATTTAAAA--CCAGGTGTAA-CGAATCA-------CAAT-AAAGTT-GTACCAACC---AGGCACGAA-GAATGAGGG----AGGAAACACATTTTT--ACAA--CGTTC-ATNTTCTGTTATTTCTGCATGTATAAAG-T-GATTCGAATTTTCANATGCAAAATAAGATATGTTGAGT-ATCTC-C-TGCGGACATTGTTAAA-AGTAGGTTTTAAAAAT-AA-TTTTC-CCCTCATATATTGACCTCATTTTCTTCCAACGCTTGAAANATCNACGTGATTTTCAAGGTGGACT-G-A---TCCGA-CTTTGTA-TCAAATATCGGCA---A------TTTAC-TGTCC-GAC-TCAA-GATCAAATTGACTCATTGCGTTTGAA-CTTGAATATTTCAAAGTAGAATATAAAGTTTTTCAAAAGAAACAT-------------ATATGCATTCTATA-TTTCCAATA--ATN--AA--T-TTATCAAATATTT-GTAAATAACA--CATTCAA-GTAA-A-TGTCT---TTT------ACACATTTTGN--AAAGT--ATA--AG----AAGTTT--GATC----------GATCA-AAATATA-------ACCTGGCGGATCTT---CG-----------------ATT-TTTCCGGGTTT------CA-GTAC--TTTTG--A--TGAGCGAATGTAAAAATAACTCTAACGTCGTT-ATTGAATATA-AGAAGAAAAC-T-TTTT----AAAGTT-TA------ATTATTACT---CTAAATAGT-CAATCACAGACAAA-GACGAATTTATTGCATTAAA-TTTG-----TTTAAATG-AACATCAAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCGA---CTCAAGATC-ACTTTAC
finalCons : AGTGATCGTGAGTCGGACA---------CCCTGC-TCTT--T-CCTTTTCGTATGCAGATTTCTTCCGACTGTTT-CCCCTA--TGGTATTTGGTGTTGCCCGAAAGAGCTCGA--AA---A-C-GTGTACTATTTTNT-GCTC-GGATCACCTTGGTAT----TCTACC-TCATAATT-CAT-TTA----GA-T-GCGAN---AAA------CTCCCAACAT--CNAAAT-T-CGTTCG-TAA-GTCGGACAC-ATTTGA-TAT---TGAG-T----CGGACGCTC-------GTAT----TATTATGAAT--TACACAGCCAGGTAAC--TAAA--TTACAGGTAT--TCT-G---C---TGACAATTATTTTTATAAT-------------------------------------TTATTT---TTTTTATAACT-AAA----TAATTTAAAA--CCAGGTGTAA-CGAATCA-------CAAT-AAAGTT-GTACCAACC---AGGCACGAA-GAATGAGG-----AGGAAACACATTTTT--ACAA--CGTTC-ATNTTCTGTTATTTCTGCATGTATAAAG-T-GATTCGAATTTTCANATGCAAAATAAGATATGTTGAGT-ATCTC-C-TGCGGACATTGTTAAA-AGTAGGTTTTAAAAAT-AA-TTTTC-CCCTCATATATTGACCTCATTTTCTTCCAACGCTTGAAANATCNACGTGATTTTCAAGGTGGACT-G-A---TCCGA-CTTTGTA-TCAAATATCGCA-----------TTTAC-TGTCC-GAC-TCAA-GATCAAATTGACTCATTGCGTTTGAA-CTTGAATATTTCAAAGTAGAATATAAAGTTTTTCAAAAGAAACAT-------------ATATGCATTCTATA-TTTCCAATA--ATNAA----T-TTATCAAATATTT-GTAAATAACA--CATTCAA-GTAAA--TGTCT---TTT------ACACATTTTGN--AAAGT--ATA--AG----AAGTTT--GATC----------GATCA-AAATATA-------ACCTGGCGGATCTT---CG-----------------ATT-TTTCCGGGTTT------CA-GTAC--TTTTG--A--TGAGCGAATGTAAAAATAACTCTAACGTCGTT-ATTGAATATA-AGAAGAAAAC-T-TTTT----AAAGTT-TA------ATTATTACT---CTAAATAGT-CAATCACAGACAAA-GACGAATTTATTGCATTAAA-TTTG-----TTTAAATG-AACATCAAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCGA---CTCAAGATC-ACTTTAC
Alignments
lowQualScore : 222222222 11111 111111 1111111 11111111 555555555555555555555555555555555555555555555555 111 1111 222222222 111 33333333 22222222 3333333 33333 1 1 1 2222 11 1 44444 11 666666666666666 1 4444444444444 1 11 2222222 11 111 111 111111 11 1111 2222222222 1111111 33333333333333333 111111111 11111 111111 11111
lowQualScore : 3 222222222 5 77 5 5 3 0 5 66 55 88888 77 5 4 4 0 8888 1 4 3 8 4 8888 4 4 8888 777777 3 55 1 4 4 1 4 0 4 4 4 777 4 9999 0 4444444 9999 55 0 1 99 66666 0 55 4 44444444 666666666666666666666666666666666666666666666666 000 66 6 2222 77 6 2 555555555 6 3 6 111 0 6 1 88888888 99 99 6 1 22222222 1 3333333 33333 0 0 9 0 0 0000 0 44 1 2 3 2 0 44444 00 3 111111111111111 0 8 8 8 8 0 8 8 1 0 22 66 0 4444444444444 0 3 8 1 11 0000000 8 6 1 6 99 1 33 777 000 666666 777 11 66 0000 66 1111111111 5 6666666 888 55555555555555555 5 777777777 66 88888 5 5 4 4 44444 0 4 111111 777 4 4 66 11111 66 3 3 3 666 3 55 3 4 777 4
lowQualScore : . ......... . .. . . . . . .. .. ..... .. . . . . .... . . . . . .... . . .... ...... . .. . . . . . . . . . ... . .... . ....... .... .. . . .. ..... . .. . ........ ................................................ ... .. . .... .. . . ......... . . . ... . . . ........ .. .. . . ........ . ....... ..... . . . . . .... . .. . . . . . ..... .. . ............... . . . . . . . . . . .. .. . ............. . . . . .. ....... . . . . .. . .. ... ... ...... ... .. .. .... .. .......... . ....... ... ................. . ......... .. ..... . . . . ..... . . ...... ... . . .. ..... .. . . . ... . .. . . ... .
lowQualScore : 0 999999999 7 99 7 0 0 1 0 99 55 33333 22 3 4 4 1 5555 4 0 3 0 0 5555 0 0 0000 000000 0 55 0 0 0 2 0 1 0 0 4 888 4 4444 7 4444444 4444 55 7 3 55 44444 5 55 0 33333333 222222222222222222222222222222222222222222222222 000 44 7 1111 99 7 2 888888888 7 7 7 777 7 7 0 77777777 22 22 7 0 66666666 0 0000000 00000 7 0 8 0 0 2222 8 22 0 0 2 5 0 55555 22 2 222222222222222 8 0 0 0 0 8 0 2 4 8 44 22 6 0000000000000 6 2 0 4 00 6666666 0 0 0 7 22 0 33 333 000 444444 999 99 99 6666 99 9999999999 0 2222222 888 00000000000000000 0 444444444 99 00000 7 7 0 0 00000 8 0 555555 000 4 4 88 11111 00 6 6 6 444 6 00 6 0 000 0
consensus : AGTGATCGTGAGTCGGACA---------CCCTGC-TCTT--T-CCTTTTCGTATGCAGATTTCTTCCGACTGTTT-CCCCTA--TGGTATTTGGTGTTGCCCGAAAGAGCTCGA--AA---A-CGTGTACTATTTTNT-GCT-CGGATCACCTTGGTAT----TCTACC-TCATAATT-CAT-TTA----GA-T-GCGAN---AAA------CTCCCAACAT--CNAAAT-T-CGTTC-GTAA-GTCGGACA-CATTTGA-T---ATTGAG-T----CGGACGCT-------CGTAT----TATTATGAAT--TACACAGCCAGGTAAC--TAA-A-TTACAGG--TATTC-TG---C---TGACAA-----------TTATTTTT----------ATAA-T-------------TTATTT---TTTTTATAACT-AAA----TAATTT--AAAACCAGGTGT-AACGAATC-A-------CAAT-AAAGTTGTAC-CAACCA---GGCACG-AAGAATGA-GG-----AGGAAACACATTTT--TACAA--CGTT-CATNTTCTGTTATTTCTGCATGTATAAAG-T-GATTCGAATTTTCANATGCAAAATAAGATATGTTGAGT-ATCTC-C-TGCGGACATTGTTAAA-AGTAGGTTTTAAAAAT-AA-TTTTC-CCCTCATATATTGACCTCATTTTCTTCCAACGCTTGAAANATCNACGTGATTTTCAAGGTGGACT-G-A---TCCGA-CTTTGTATCAAATATC-GGCA----------TTTAC-TGTCC-GAC-TCAA-GATCAAATTGACTCATTGCGTTTGAA-CTTGAATATTTCAAAGTAGAATATAAAGTTTTTCAAAAGAAACAT-------------ATATGCATTCTATA-TTTCCAATA--ATN--AA--T-TTATCAAATATTT-GTAAATAACA--CATTCAA-GTAA-A-TGTCT---TTT------ACACATTTTGN--AAAGT--ATA--AG----AAGTTT--GATC----------GATCA-AAATATA-------ACCTGGCGGATCTT---CG-----------------ATT-TTTCCGGGTTT------CA-GTAC--TTTTG--A--TGAGCGAATGTAAAAATAACTCTAACGTCGTT-ATTGAATATA-AGAAGAAAAC-T-TTTT----AAAGTT-TA------ATTATTACT---CTAAATAGT-CAATCACAGACAAA-GACGAATTTATTGCATTAAA-TTTG-----TTTAAATG-AACATCAAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCGA---CTCAAGATC-ACTTTAC
Reference ( family-7343 ) : AGTGATCGTGAGTCGGACA---------CCCTGC-TCTT--T-CCTTTTCGTATGCAGATTTCTTCCGACTGTTT-CCCCTA--TGGTATTTGGTGTTGCCCGAAAGAGCTCGA--AA---A-CGTGTACTATTTTNT-GCT-CGGATCACCTTGGTAT----TCTACC-TCATAATT-CAT-TTA----GA-T-GCGAN---AAA------CTCCCAACAT--CNAAAT-T-CGTTC-GTAA-GTCGGACA-CATTTGA-T---ATTGAG-T----CGGACGCT-------CGTAT----TATTATGAAT--TACACAGCCAGGTAAC--TAA-A-TTACAGG--TATTC-TG---C---TGACAA-----------TTATTTTT----------ATAA-T-------------TTATTT---TTTTTATAACT-AAA----TAATTT--AAAACCAGGTGT-AACGAATC-A-------CAAT-AAAGTTGTAC-CAACCA---GGCACG-AAGAATGA-GG-----AGGAAACACATTTT--TACAA--CGTT-CATNTTCTGTTATTTCTGCATGTATAAAG-T-GATTCGAATTTTCANATGCAAAATAAGATATGTTGAGT-ATCTC-C-TGCGGACATTGTTAAA-AGTAGGTTTTAAAAAT-AA-TTTTC-CCCTCATATATTGACCTCATTTTCTTCCAACGCTTGAAANATCNACGTGATTTTCAAGGTGGACT-G-A---TCCGA-CTTTGTATCAAATATC-G-CA----------TTTAC-TGTCC-GAC-TCAA-GATCAAATTGACTCATTGCGTTTGAA-CTTGAATATTTCAAAGTAGAATATAAAGTTTTTCAAAAGAAACAT-------------ATATGCATTCTATA-TTTCCAATA--ATN--AA--T-TTATCAAATATTT-GTAAATAACA--CATTCAA-GTAA-A-TGTCT---TTT------ACACATTTTGN--AAAGT--ATA--AG----AAGTTT--GATC----------GATCA-AAATATA-------ACCTGGCGGATCTT---CG-----------------ATT-TTTCCGGGTTT------CA-GTAC--TTTTG--A--TGAGCGAATGTAAAAATAACTCTAACGTCGTT-ATTGAATATA-AGAAGAAAAC-T-TTTT----AAAGTT-TA------ATTATTACT---CTAAATAGT-CAATCACAGACAAA-GACGAATTTATTGCATTAAA-TTTG-----TTTAAATG-AACATCAAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCGA---CTCAAGATC-ACTTTAC
gi|1 : AGTGATCGTGAATCGGACA---------CCCTGC-TCTT--T-CCTATTTGCATGTTGATTTCTTCCAACTGTTT-CCCCTA--TGGTATTTGGTGTCGCCCAAAAGAGCTCGA--AA---T-TGTGAAC--TTTTTT-ACT-CGGATCACCTT--------------C-TTA-AATT-CAT-TCA----GA-T-GCGAT---AAA------CACCCAACAT--CCAAAT-T-TGTTT-GTAA-GTCGGACA-CATTTGATT---ATTGAA-TCATGCAGACACG-------CAAAT----TATTATGAAT--TATACAGGCAGGTAAC--T-T-T-TTGCAGG--TATTC-TG---C---TTACAA-----------ACA-TTTT----------ATAACT-------------TTGTATGAATTTTCAT---T-AAAATCTTAATTT--AA
gi|1 : a-T-------------TTATTT---TTTCTA--ATT-AAA----TTATTC--AAA-TCAGGTGT-AATGAATC-AATTAAGGTAAT-AAATTTAAAC-CAAACT---GGCACG-TAGAATGG-GGT----AGGGGGCACCTTTT--TACAAGTTGTT-CATTTTCTGTTATTTCTACACATA--------------AATTTTTATATGCAAAATAAGATATA-------ATGCC-C---CGGTCATTGTTAAA-AGTAGGTTTTAAAGAT-AA-TT------------TATTGACCCCATTTTCTCCCAACACTTGAGATTTCGATGTGATTTTCAAGGTGGACT-G-ACTGTCCGA-TTTTGTTTCAAATATC-GACATTTAAATGATTTTAC-TGCCCAGAC-TCAA-GATCAAATAGACTCATTGTGTTTGAA-CTTGAATATTTCAAAATAGAATGTAAATTTTTTCGCAAGAAACACATGTACATCTATAATATACATTCTATA-TTTTCATTA--AT----A--T-TTATCATAAATTT-ATGAATAATA--CATTCAA-GTAATATTGTCT---CTT------ACACTTTTTAA--AAAAT--TTA--AG----AAGTTT--GATC----------GATCA-AAATATA-------ACCTGGCGGATCTT---CG-----------------ATT-TTTCCGGGTTT------CA-GTAC--TTTTC--T--TGGTTGAGTGTAAAAACAACTGTAACACCGTA-ATTGATTATC-AGAAGACAAC-T-TTTTTAAAAAAGTT-TG------ATTATTGCT---CTGTAAAGT-CAATCACAGAGGAA-GATGAATCTATTGCATTAAT-TTTG-----TTAGAATC-AACATCAAA-GTTTGT---CAGC-CT--GTAGAT-TGTAT-CTGA---CTCAAGATC-ATTTTACtaagataagagggctctttattttttctaattaaattattcaaatcaggtgtaatgaatcaattaaggtaataaatttaaaccaaactggcacgtagaatggggtagggggcacctttttacaagttgttcattttctgttatttctacacataaatttttatatgcaaaataagatataatgccccggtcattgttaaaagtaggttttaaagataatttattgaccccattttctcccaacacttgagatttcgatgtgattttcaaggtggactgactgtccgattttgtttcaaatatcgacatttaaatgattttactgcccagactcaagatcaaatagactcattgtgtttgaacttgaatatttcaaaatagaatgtaaattttttcgcaagaaacacatgtacatctataatatacattctatattttcattaatatttatcataaatttatgaataatacattcaagtaatattgtctcttacactttttaaaaaatttaagaagtttgatcgatcaaaatataacctggcggatcttcgatttttccgggtttcagtacttttcttggttgagtgtaaaaacaactgtaacaccgtaattgattatcagaagacaacttttttaaaaaagtttgattattgctctgtaaagtcaatcacagaggaagatgaatctattgcattaattttgttagaatcaacatcaaagtttgtcagcctgtagattgtatctgactcaagatcattttacc
gi|10 : aagtgatcgtgaatcggacaccctgctctttcctatttgcatgttgatttcttccaactgtttcccctatggtatttggtgtcgcccaaaagagctcgaaattgtgaacttttttactcggatcaccttcttaaattcattcagatgcgataaacacccaacatccaaatttgtttgtaagtcggacacatttgattattgaatcatgcagacacgcaaattattatgaattatacaggcaggtaactttttgcaggtattctgcttacaaacattttataactttgtatgaattttcattaaaatcttaatttaataagataagagggctcAGTGATCTTGAGCCGAA-A---------CCCTTC-ACTC--T-CCCTTTCGTATTCAGATTATTTCCGACTGT---CTCCTG--AGGTATTTGGTGTTACTCGAAAGAGCTCGA--AAT--ATTGTGTACTATTATCT-GCT-CGGATCAC--TG----------TGC-----------------------A-T-GCGAC---AAA------CTCCCAACAT--CGAAAT-T-CGGTC-GTAC-GTCGGACA-CATTC-A-T---TTTCAG-T----CGGACACT-------GATAT------TTATAA---------AGTCGGGTCGCA-TAT-A-TCGCTGG--TATTC-TA---C---TGATAA------------CAATTTC----------ATAA-T-------------TTACTT---TTTGTA-AACc
gi|11 : aTTGGTGTTGCCCGAAAGAGCACGA--AA---A-CGTGCACTATTTTTT-GCC-CGGACCACCTTGGTATATATTCTACC-CCATAATT-CAT-TTA----GA-T-GCAAA---AAAAAAAAACTCCCAATAT--CTAAAT-T-CGT------------------ATTTGA-T---ATTGAG-T----CGGATGCT-------CGTAT----TATTATGAAT--TACACAACCAGGTAAC--TAA-A-TTAAACG--TATTC-TGGTACATGTAACAA-----------TGTTTTTT----------ATAA-T-------------TTATTT---TTTTacgt
gi|12 : GATTTTTTTCGGCTATTT-CCCCTACATGGTATTTAGTGTTGCCGGATAGAGCTCGA--AA---T-TGTATACTATTTTAT-GCT-CAGATCACACTGGCAT----TTTACC-TCATAATG-CAT-CTA----GA-T-GCGAT---CAACT----CTCTCAACAT--CAAAAT-T-CGTTC-GCAC-GTCGGCCA-CACTTGA-T---TTTGAG-T----CATACACG-------CGTAT----TATTATGAAA--TATACAGGTAGGTAAC--T-T-A-TTGCAGG--TGTTT-TT---C---TGACAG-----------CTA-TCTT----------ATAA-T-------------TTACTT---TTTgtgaagatataagagtttttttttttaagttatatattt
gi|13 : --TACACAGCCAGGAAAC--TAA-A-TTACAAG--TATAC-TA---A---TAAAAAAAAAATTAAATTTATTTTTTGTAAACAT-ATAA-TATAAGAGAG----TTCTTTA--TTTTTTTAACT-GAA----TGATTT--AAAACCAGGTGT-AACGAATC-A-------CAAT-CAAGTTATAC-CAACCA---GGCATG-AAGAATTA--A-----AGGAAACACATTTT--TAAAA--CGTT-CATGTTCTGTTATTTCTGCATGTATgaga
gi|14 : TAT----TTTACCCTTATAATTACAA-TTAATCAGA-CAGCGAACAAAAA------CTCCTAA-ATTTCAGAAT-TGCGATC-GAAAAGATGGACA-CATTTGA-TATCATTGAG-T----CGGACACTCACAGTGCGTATGTAGTAGTATGAATAATACAC-GCAGGGTAAT--TTA-T-TTACAAGTATATTCTTA---C---TGACAA-----------TTATTTTT--------------------------------TTT---TTTTT
gi|15 : -TGTCT---TTT------AAACATTTTGGCAAAAGT--ATA--AG----AAGTAC--GGCC----------GATTA-AA-TATA-------ACATGGTGGATCTT---CG-----------------ATT-TGTTCGGCTTT------CAGGTAC--TTCTGTTAATTAAGTGATTGCAAAAATAAC-CTAACGTCGTTAATTGAACATA-CGAA-AAAAC-T-GTTT------AGTT-TA------ATTATTATT---CTATAT
gi|16 : TCTAACGTCATT-ATTGAATATA-CGAAGAAAAC-T-TTT-----AAAGTT-TA------ATTATTACT---CTAAACAGT-CAACCACAGACAAA-AACGAGTTTATTGCATTAAT-TTTG-----TT--AATT-A--ATTTAA-G-TTGT---TTAA-CT--TTAGAT-CGTGT-CCGA---CTCAAGATC-ACTT
gi|17 : AGAAAAA-T-TTTT----AA-GTT-TATTAATTACTATTACTTGGCTAAATAGTACAATCACAGACAAATGACGCATTT--TGC-TTA---TTTG-----TTCCAATG-AACACC-AA-G-TTGT---CCGA-CTAGTTAGAT-TGTGT-CCGAACCCTCAAGATCAACTTTA
gi|18 : tgAGAAAACAT-TTTT----AAAGTT-TA------ATTATTACT---GTAAATAGT-CAATCACAGACAAA-GACGAATTTATTGCATTAAT-TTTG-----TTCAAATG-AACACCAAA-G-TTGT---CCGA-CT--TTAGAT-TGTGT-CCGA---CTCAAGATC-ACTTTAC
gi|19 : tgAAAGCTAGAGTAA---G-CCTG-GTTATTTTAT-ACT-CAGGTCATCTCGGTAT----TTTACC-TTATAATTACAT-TCA----GA-A-GCGAA---AAA------CTCCTAATTT--CAGAAT-T-CGATC-GAAA-GTTGGACA-CATTTc
gi|2 : AGTGATCGTGAGTCGGACA---------CCCTAC-CCTT--T-CCTTTTCGTATACAGATTTCTTCCGACTGTTT-TCCCTA--TAGTAATTGGTGTTGCCCGAATGAGCTCGA--AA---A-CGTGTACTATTTTTT-GCT-CGGATCACCTTGGTAT----TCTAC--------TT-CAT-TTA----GA-T-GCAAT---AAT------CTCCCAATAT--CTAAAT-T-CGTTC-GTAA-GTCGGACA-CATTTGA-T---ACTGAG-T----CGGACGCT-------TATAT----TATTATCAAT--TACACAGCCAGGTATT--TAA-A-TTACAAG--TATTC-TG---T---TGACAA-----------TGGGTTCT----------TTGA-T-------------TTTTTT---TTTTTATAATT-AAA----TATTCT--AAAACCAGATAC-AATGAATC-G-------CAAT-AAAGTTGTAC-CAACCA---GACATA-AAGAATGATGG-----AGGAAACACATTTT--TACAA--CGTT-CATATTCTGTTATTTCTGCATGTGTAAAG-TTGATTCGAATTTTCAAATGCAAAATAAGTTATGTTGAGTTATCTCAT-TACAGACATTGTTAAA-AGTAGGTTT-AAAAAT-AACTTTTC-CCCTCATATATTGACCTCATTTTCTTCCAACGTTTAAAAGATATGTGTGATTTTCAATGTGGACT-G------------TGTGTATCAAATATCCA-CAA---------TTTAC-TGCCC-GAC-ACAA-GATCAAATTGACTAATTGCGTTTGAA-CTTAATTATTTCAAAGTGGAATATAAAGTTGT-CAAAAGAAACAT-------------ATATGCATTCTTTA-TTTCCAATG--ATG--AA--T-TTATCAAATATTT-GTAAATAACA--CATTCAA-GTAA-A-TGTCT---TCT------ACACATTTTGT--AAAGT--GTA--AG----AAGTTT--GATC----------GTTCA-AAATATA-------ACCTGGCGGATCTT---CG-----------------ATTCTTTTCGGGTTT------CA-GTAC--TTTTG--A--TGAGCGAATGTAAAAATAACTCTAATGTCGTT-ATTGAATATA-AGAAGAAAAC-T-TTTC----GAAGTT-CA------ATTATTACT---CTAAATAGT-CAATCACAGACAAA-GACGAATTCATTGCATTAAA-TTTG-----TTTAAATG-TACATCAAA-A-TTGT---CCAA-TT--TCAGAT-CGTGT-CCGA---CTTAAGATC-ACCTTAC
gi|20 : --AAAGTT-GTA--AG----AAGTTT--GATCTCCTCGAATCGATTG-AAATATATATTATAGCCTGCCGGATCTT---CG-----------------ATT-TTCCC-GGTT----------G-----TTCTG--A--TGGTCAAGTGTAAAAATt
gi|21 : cGAGTCGGAAATTAGGAAGCCCCAGT-TCTT--T-TCTTTTC-T-TGCAGATGTTTTCCTAATG-------CCA--TGGTATTTGATGTTGCCCGAGAGAGATCGA--AA---
gi|22 : ggAATGGAACATCAATTG-TTGT---CCGAACT--TTAGATTCGTGTTCCGA---CTCAATGCC-ACTTTAtt
gi|23 : ttatgcATG-ACGGTCAAA-G-TTGTAGTCCGA-CT--CATGAT-TGCGT-TTGA---CTCACGATC-ACTTTGCgcacta
gi|3 : ttttgcagtcgAA----TAATCT--AAAACCAGGTGT-AATGAATC-A-------CAGT-AAAGTTGCAC-CAACCA---GGCATG-AAAAATGA-GGG----AGGCAACACATTTT--TACAA--CGTT-CATTTTCTTTTATTCCTGCATGTA-AAGA-T-GATTCGAATTTCCACATGCAAAATAAGATATGTTAAGTGATCTC-CATGCAGACATTGTTAAA-AGTAGGTTTTAAAAATTAA-TTTTCTCCCTCATGTATTTACCTCATTTTCTTCCAACGCTTGAAACATCTACATGAAT--CAAGGTGGACT-G-AG--TCCGA-CTTTGTATCAAATAGC-GGCA----------TTTAC-TCTTC-GAC-TCAA-GATCAAATTGACTCATTGCGTTTGAA-CTTCAATATTTAAAAGTAGAATATAAAGTTTT-CAAAAGAAACAT-------------AT--GCATTCTATA-TTTACAATG--TTA--AA--T-GTATCAAATATGT-GTAAATAACA--CATTCAA-GTAA-AGTGTCT---TTT------ACACATTTTGC--AAAGT--ATA--GG----AAGTTT--GATC----------GGTCA-AAATATA-------TCCTGGCGGATCTT---CG-----------------ATT-TTTTCGGGTTT------CA-GTAC--TTTTG--A--TGAGCGAATGTAAAATAAACTCTAACGTCATT-ATTGAATAGA-AGAAAAAAAC-T-TTTTC---AAAGTT-TA------ATTATTACT---CTAAATAGT-CAATCATTGACAAA-GACGAATTTATTGCATTGAA-TTAG-----TTTAAATG-AACATCGAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCGA---CTCAAGTTC-ACTTTACcc
gi|4 : tttATTGTTAACCAGTAGGTTTAAACAAT-AA-TTGCT-CCCTCATATATTGACTTCATTTCTTTCCACGGCTTGAAT--TCGATGTGATTTTCAAG-TGGATTTGTG---TCCGAGCTTTGTA------ATC-A-TT----------TTTACCTGTCC-GACCTCAACGATCAAATTGACCCATTGCGTTTGAAACTT--ATATTTCAATATAGAATA--AAGTTTTTCAAAAGAAACAT-------------AT-T-CATTCTATAATTTTCAATA--ATC--GAATT-TTAATAAATATTTTGTAAATAACA--CATTCAAAGTAA-A-TGTCT---TTTTACACTACACATTTTGC--AAGGT--ATA--AG----AAGTTT--GATC----------GATCA-AAACATA-------ACCTGGCGGATCTT---CGATCTTTTTTTTCCTTCGATT-TTTCCGGGTTTTATTACTA-GTAC--TTTTG--A--TGAGCCAATGTCAAAATAAATCCAACATCATT-ATTGAATATC-AGAAGAAAAC-T-TTTA----AAAATT-TA------ATTATTACT---CGAAATAGT-CAGTCACAGGC---------ATTTATTGCATT-AA-TT-----------AATG-AACACCAAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCTA---CTCAAGATC-ACTTTA
gi|5 : tAGTGATCGTAAGTCAGACA---------CCCTAC-TCTT--T-CCTTTTCGTATGCAGATTTATTACGACTGTTT-CTCCTA--TAGTATTTAGTGCTGCTTGATAGAACTAGA--AATTGA-TGTG---TATTTCAT-GCT-CAGATCACCATGGTAT----TTTACC-TCATAATG-CAT-CTA----GA-T-GCGAT---AAA------CTCCCAACAA--TGAAAT-T-CAATC-TTGA-TTCGGACA-CATTTAA-T---ATTGAGTT----CAGACACT-------AGGAT----TATTATGAAT--TA----------TAACTTTAATACTTACAGG--TATTT-CA---T---GGACAA-----------CTA-TTTT----------ACAA-T-------------TTACTT---TTT
gi|5 : aaTTTTATAACT-GAA----TAATTT--AAAACCAGGTGT-AAGGAAT---------------AGAGTTGTAC-CTGCTATGAGGCACG-TGGAATAA-GGGAGCTAGGGAACACTTTTT--TACAA--CGTT-CATTTTCCGTTATTTGTTCATG--TAAAGTT-GATTgtgaatgcgcatggatttttattaaaatcatatttaatatatataagagctagggtacttgaattttataactgaataatttaaaaccaggtgtaaggaatagagttgtacctgctatgaggcacgtggaataagggagctagggaacacttttttacaacgttcattttccgttatttgttcatgtaaagttgatt
gi|6 : aaagtgatcgtaagtcagacaccctactctttccttttcgtatgcagatttattacgactgtttctcctatagtatttagtgctgcttgatagaactagaaattgatgtgtatttcatgctcagatcaccatggtattttacctcataatgcatctagatgcgataaactcccaacaatgaaattcaatcttgattcggacacatttaatattgagttcagacactaggattattatgaattataactttaatacttacaggtatttcatggacaactattttacaatttactttttgtgaatgcgcatggatttttattaaaatcatatttaatatatataagagctagggtacttgaaTCGTGAGTCGGACA---------CCCTGCCTCTTATTGCCCTTTCGT-T-CAGATTTCATCCGACTGTTCGCCCCTA--TAGTATTTGGTGTTGCCCGAAAGAGCTCGA--AA---ATTGTGT-CTCTTTT-T-GCTCCGGATC-CCTTGGTAT----TCTACC-TCAAAATT-CATCTTA----GACT-CCCAA---AAA------CTCCCAATAT--CT--ATCT-CGTTCGGTAA-GTC-GACGCCATTTGA-T---ATTG-G-T----CGGACACT-------CATAT----T-TTATGAAT--TACACAGCC-GGAAAC--TAA-A-TTACAAG--TATAC-TA---A---TAAAAAAAATTACAT--TTATTTTTTGTAAACATCATAA-TATAGAGAGTTTCTTTATTT---TTTT--TAACTGAAA----TGATTTAAAAAACCAGGTGTAAACGAATCAA-------CAATCAAAGTT-TATACAACCA---GGCATGAAAGGATTA--A-----AGGAAACACATTTTTCTAAAA--CGTTCCATGTTCTGTTATTTCTGCATGTA
gi|7 : A----------TTT-T-TATCC-AGT-TCAA-CATCAGATTG-TTCATTGCGTTTTAA-ATTGATTAC-----------------GGGTTTTCAAAATAAACCT-------------ATATGCACTCTGCA-TTTCAAATATCATTTTAA--TATTATCA-----TC-CTGAATCTGA--TATT--A---AA-A-TTTCTGGGTTT------AGGAACTTTGA--AAAGTTCACACCAGTTTTAATTTTTCGATC----------GATCATGAATATT-------ACGTGGCGGATCTTTGCTG-----------------ATT-TTCCCGGTTTT------CGCGTACTATTTTA--A--T
gi|7 : gcggaaAC-TATTTT----AA--TTGTA------ATCATTGTT---TTTTA-AGT-TA--CACAATGGAA-GATGGATTGATTGCAT-GAA-TTTGATATTTTTA-------CATCAAA-G-TCGC---CCGA-CT--CCAGAT-Ctgtaatcattgttttttaagttacacaatggaagatggattgattgcatgaatttgatatttttacatcaaagtcgcccgactccagatctt
gi|8 : gcggaaatttttatccagttcaacatcagattgttcattgcgttttaaattgattacgggttttcaaaataaacctatatgcactctgcatttcaaatatcattttaatattatcatcctgaatctgatattaaaatttctgggtttaggaactttgaaaagttcacaccagttttaatttttcgatcgatcatgaatattacgtggcggatctttgctgattttcccggttttcgcgtAGTGATCGTGAGTCGGATA---------CCCAGC-TCTT--T-CCTTTTCATATGCATATTTCTTCCGACTGTTT-TCCCTA--TAGTATTTGGTGTTGCCCGAAAGAATTCGA--AA---A-CGTGTACTATTTTTTTGCT-CGGATCACTTTGGTAT----TCTACC-TCATAATT-CAT-TTA----GA-T-GCAAT---GAA------CTCCCAATAT--CTAAAT-T-CGTTC-GTAA-GTCAGACA-CATTTGA-T---GTTGAG-T----CGGACGCT-------CATAT----CATTATGAAT--TACACAGCCATGTAAC--TAA-A-TTACAAG--TATTC-TG---T---TGACAA-----------TTATTTTT----------ATAA-T-------------TTATTT---TTTtt
gi|9 : aT-GCAAATAATATACATATAA--TAA-----------TTT------ACACATTTTGC--AAAGT--ATA--AG----AAGTTT--GATC----------AATCA-AAATATA-------GCCTGGCTGATCTT---TG-----------------ATT-TTTCCGGGTTT------TA-TTAC--TTTTG--A--TTAGCGGATGTAAAAATAACTCAAACGTCGTT-ATTGAATATATATAAGAACAC-T-TTTC----AAAATT-TA------ATTATTACT---CTAAATAGT-CAATCACAGACAAA-GACGAATTTATTGCATTAAATTTTT-----TTTAAATG-AACATCAAA-G-TTGT---CCGA-CT--TTAGAT-CGTGT-CCGA---CTCAAGATC-ACTTTAgtgaacatataagataa