lowQualScore : 111111111 111 22222222222 4444444444444 11111111 33333333333333333333 1 11111 11
lowQualScore : 1 777777777 2 7 5 3 4 333 9 3 33333333333 4 555 3 3 3 3 6 0 3 55 55 3 6666666666666 33 33333333 555 2 33 22222222222222222222 2 555 0 4 5 5 2 3 77 6 3 3 3 3 3 3 44 3 3 2 6666 77777 33 3 11 5555 6 2 6 6 77 44 1
lowQualScore : . ......... . . . . . ... . . ........... . ... . . . . . . . .. .. . ............. .. ........ ... . .. .................... . ... . . . . . . .. . . . . . . . .. . . . .... ..... .. . .. .... . . . . .. .. .
lowQualScore : 8 444444444 9 6 3 8 9 999 4 6 33333333333 0 555 3 3 3 3 7 2 6 00 99 1 0000000000000 99 22222222 000 9 99 11111111111111111111 9 000 9 9 7 7 9 1 33 2 1 1 1 1 1 1 22 1 1 9 1111 55555 22 1 44 9999 5 7 7 7 77 88 4
consensus : GCCTAAAATAAA-A---T--ATTGTTTG-TTTCCCC-AATCCCGACC-A-ACCCGA-AAAAA--TCGGC--GCGA-CCG-G-AAGA-A-T-T-TT-ATTGCCAA-TTTT--GT-GTGG-AA----T-------TT--TTTTTA--------TC---GAAATCCT-A--A--G-----------------TGG-TGC---TCCTAATG-AAAGGGA-GGA-G-T--C-AAAT-A-CG-A-GAAA-GG-ACC--GCTTT-TCTTC-AAAGCGCTT-T----TG--T--AATCG-GCA-TAGG-TG-A--AAACGTTT-CGATGACTC-ACAGGG-GCTCGTCAC-GAAATATTGACCCTCTATATTCTGTAT
Reference ( gi|11 ) : GCCTAAAATAAA-A---T--ATTGTTTG-TTTCTCC-AATCTCGACC-A-ACCAGA-AAAAG--TTGGC--ACGA-CCG-G-AAGA-A-T-T-TT-ATTGCCAA-TTTT--GT-GTGG-A-----T-------TT--TTTTTA--------TC---GAAATCCT-A--A--T-----------------TGG-TGC---TCCTAATG-AAAGGGA-GGA-G-T--C-AAAT-A-CG-A-GAAA-GG-ACC--GCTTT-TCTTC-AAAGCGCTT-T----TG--C--AATCA-GCA-TAGA-TG-A--AAATGTTT-CGATGACTC-ACAGGG-GCTCATCAC-AAAATATTGACCCTCTATATTCTGTAT
gi|17 : GCCTAAAATAAA-A---T--ACTGTTTG-TTTCCCC-AATCTTGACCCG-ACCCGA-AAAAA--TTGGT--GTGA-CTG-A-AAGA-A-T-T-TC-ATTGCCAA-TATT--GT-GTGG-AAT---C-------TT--TTTTTA--------TC---GAAATCCT-A--A--T-----------------T-G-T-C---TCCT-ATG-AAAGGAA-GGA-G-T--CAAAATAA-CGAA-GAAA-GG-ACC--ACTTTCCCTTC-AAAGTGCTT-T----TG--C--
gi|7 : GCCAAAAATAAA-T---A--ATTGTTTG-TTTCCCCAAAACCCGACC-CTATCAG-----AG--TTGGta
gi|12 : tgtggaattttttttttattgaaatcctaattggtgctcctatggaatggaggagtcaaatacgagaaaggaccacttttcttcaaagcgcttttgtaattggcataggtgaaaacgtttccatgactcacatgggctcatcacgagcatcatcaacgaaatattctgctatttgtaaatatagaatcagacggtgtcaaataacaattaaagacaagtagctctggacaatcttgtgtcctccccccctcccccccccaataaaatattttatcctaacctatacccaaGCCTAAATTAAA-A---T---TTGTTTG-TTTC-CC-AATC--AACC-A-ACTGGA-AAAA---TCACT--GCAA-CCG-G-AAGA-A-A-T-TT-ATTACCAA-TTTT--GT-GTGG-A-----A-------TT--TTTTTCTTTTCTCTTC---GAAATCCT-A--A--------------------TGG-TGC---T-TTAATGAAAAGGGATCGA-G-T--C-AAAT-A--G-A-GAAA-GGCACC--ATTTT-TGTTC-AAAG-GCTT-TTTTATG--T--AATCA-GAA-TAGG-TG-G--AAA-GTTT-C
gi|26 : GCCAAAAATAAATA---TTAATTGTTTG-TTTCTGC-AAACCCGACC-cgagtctatttaatatatctgccatacggaaacaatgaa
gi|14 : agGCCAAAAATAAA-T---A--ATTGTTCG-TTTCCCC-AAACCCTACC-c
gi|20 : ggaaatgaacacttgatacgccctagaccttggtgtcctacatatgtattatgctggtgttatttcctttttacacataccaacaaaaaacaattcccccatcccaaaataaaatattttacctacctaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgcctacctacctacctgctagGCCAAAAATAAA-T---A--ATTGTTTG-TTTCCCC-AAc
gi|13 : acccacacccaaacctgatagggtccgcggttCCTAAATTAAA-A---T---TTGTTTG-TTTCCCC-AATCCCAACC-A-ACTGGA-AAAAA--TCACT--GCAA-CCG-G-AAGA-A-T-T-TT-ATTACCAA-TTTT--GT-GTGG-AAT---T-------TT--TTTTTC--------TCTTCGAAATCCT-A--A--G-----------------TGG-TGC---T-TTAATG-AAAGGGATCGA-G-T--C-AAAT-A-CG-A-GAAA-GG-ACC--ATTTT-TGTTC-AAAGCGCTT-T----TG--T--AATCA-GCA-TAGG-TG-A--AAACGTTT-CGA
gi|5 : CTTAAAATAAA-A---T--ATTGTTTG-TTTC-CC-AA-CTCGACG-A-CCCTGA-AAAAA--TCGCT--GCAA-CCG---AAGA-A-T-T-TT-AAAAGCAA-ATTCAAGC-GTGA-T-----T-------TT--TTTTTA--------TC---GAAATCTT-A--A--G-----------------TGG-TGC---TCC-AATGAAAAGGGG-AGA-G-TC-C-AAAT-A-CG-A-GAA---G-ACT--GCTTT-TCATCAAAAGCACTT-T----TGAAC--AATCATGTA-TAGG-CC-A--AAACCTTTGCGAgttctatttaatatatctgccataaggaaacaat
gi|16 : CCAAAAATAAA-T---A--ATTGTTTG-TTTCCCC-AAACCCGACC-gtttatctgctaaacggaaatgaacacttgattcgccctatgagaccctttgatgttctatatatgctggtgtttatttcctttttacacataccaaaaaaataatttaagcccacctccaaatatgaaaatagtttacctacctacctaccacatccaaccgatagggtcgggtttgggaaacat
gi|2 : aaatgtgaaaacgtttcaatgactcacaggggctcgtcacgaaatattgactctctattttctgtattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccaccccaaaaaaatttacctacctacctttaacacacacccaacctgatagCTAAAATAAA-----T--ATTGTTTTCTTTCCCC---TCCCAACCCA-ACCCGA-AAAAAATCTCGCTTGCGA-CTG-GGAAGA-A-T-T-TTGATTGCCAA-TTTT--GTTGTGG-AAA---T-------TT--GTTTTA--------TC---GAAATCCTTA--A--G-----------------TGG-TGC---TCCTAATG-AAAGAGA-GGA-AAT--C-AAAT-AACT-G-GAAA-G--ACT--GTTTT-CTTTC-AAAGCGCTT-T----AG--T--AATC--GCA-TAGGTTG-A--AAACATTT-CGA
gi|15 : TAAAATAAA-AAAAT--ATTGTTTG-TTTCCCTTAATCCTGACCGA-ACCTGACAAAAA--TCACT--GCGA-CTG-G-AAGA-T-A-T-TT-ATTGCCAA-TTTT--G--GTGG-ACAACTT-------TT--TTTTTA--------T----GAAATCCT-A--A--G-----------------TGG-TGC---TCC-AATG-AAGGGGG-AGA-gttgttcattttaataatctccataaggaaatgacacttttgattactccctagccttggtgtcctttatggtggtgttatttcctttttgcacaaccaacaaaacaacaatttaccccccctccccctcccccccccccaataaaaaaaaaaaattttacgttacctacctatccacacccaaagctgatagggtcaggtttgggacacaaaaattacttatttttttg
gi|19 : TAAAATGAA-A---T--ATTGTTTG-TTTCCCT-AATCTCGACC-G-ACCCGA-AAAAA--TTTAC--GCAA-CCG-G-AAGA-A-T-T-TT-Acccttttggtaaatcagcataggtgaataaatgtttcgagtttctatttaacatatctgccataagggaaatgaaacctt
gi|6 : AAAATAAA-T---A--ATTGTTTG-TT--TCC-AAACCCGACC-
gi|3 : caatctcgaccaacacgaaaaaattggcacgaccaaaagaattttattgccaattttgtgtggaattttatttttatctaaatcctaattggtgctccgatgaaagggaggagtcgaatacgagaaagtaccacttttcttcaaagcacttttgtaacgcataatgtgaaacgtttcaataactcgacagggagctcaacacgaaaatactgaccctctattctgtatttgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtccccccccccccaccccaaataaatatatttacctaccttacctacccacaccaactgaaagAAATAAA-A---T----TGTTTG-TTT-TCC-AATCACGACC-------GA-AAAAA--TTTGCT-GCGA-CTG-G-AAGA-A-T-T-TT-TATGCCA---TTT--GT-GTGG-AATT--T-------TT--TTTTTAA-------TC---AAAATC-T-A--A--G-----------------TGG-TGC---TTC--ATG-AAAGGAA-GGA-G-TATC-AA-T-A-CG-A-GAAATGG-AGC--ATATT-TCTTC-AAAGTGCTT-G----TG--T--AATCA-GCA-TAGG-TG-A--ACA--TTT-CGAtg
gi|6 : tC-AATCTCGACC-A-ACACGA-AAAAA--TTGGC--ACGA-CCA-A-AAGA-A-T-T-TT-ATTGCCAA-TTTT--GT-GTGGAA-----T-------TTTATTTTTA--------TC---TAAATCCT-A--A--T-----------------TGG-TGC---TCC-GATG-AAAGGGA-GGA-G-T--C-GAAT-A-CG-A-GAAA-GT-ACC--ACTTT-TCTTC-AAAGCACTT-T----TG--T--AAC---GCA-TA-A-TGTG--AAACGTTT-CAATAACTCGACAGGGAGCTCAACACGAAAATACTGACCCTC--TATTCTGTATgttttaaaatttaatatatctgttcccataaagggacgaatgacactgatacacacactttgggtgtctcgttatgctggtgtattttcctttttacacatacccaaaaaaacataattcccccccccccccataaataaaataatcttacctcctattactctactcacacccaactgaaataagggtcggtttggggtaaacaaagaattatttatttttt
gi|4 : CAAA-AAAAA--C--GC--GCGATCCGTG-AAGA-AAT-TATTGATTGCCAA-TTTT--G--GTGG-AATTT-T-------TT--TTTTTA--------TC---GAAATCTT-A--ATGT-----------------TGGTTGC---TCC-AATG-AAAGGGA-GAAGG-T--C-AAAT-A-CT-A-GAAA-GG-ACCCTGCTTT-TCTTC-AAATTGCTTCT----TG-------TCA-GCA-TAGGTTG-A--AAACGTTT-CAATGttgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtccccccccccccaccccaaataaatatatttacctaccttacctacccacaccaactgaaagggtcgggtttggaaacaaacaattatttatttttg
gi|10 : ccga-AATA-A-TGT-TT-A----CAA-TTTT--GA-ATGG-A-----A-------TT--TTTTTA--------TC----ATATCCT-ATAA--G-----------------TGG-TGC---TCC-AATG-AAAAGGA-GGA-G-T--C-AAAT-A-CA-A-GAAA-GG-ACC--GCTTT-TCTTC-AAAGCACTT-T----TG--T--AATCA-GCA-TAGG-TG-A--AAACGTTT-CAAttttatttaatatatctccataagggaaatgaaatcacgttgatacgccttacgacctggggttcctattatcactctggtagttatatttctcttagtctacacttacccaaactagacaaacatgatcacccccttccctcccaaatgaaaatcagtttactatctttctaccctaaccacatgaatagggtcgggatttgtggaaacataaa
gi|1 : -AAGATA-T-T-TT-ATTTCCAAGTTTT--AT-GTAG-A-----TAATTATGTT--GTTTTA--------TC---GAAATCCC-A--A--G-----------------TGT-TGCAGCTGCCAATG-AAGGGGA-GGA-G-T--C-AAAT-A-CG---GAAC-GG-ACC--GC-TT-TCTTC-AAAGCGCTT-T----TG--TA-AATCG-GCA-TTGT-TG----AAATGTTT-CAAgttttaattaatatatctgccataagggaaacacttaatacgccctagacctcgattttctattatgctggtgttatttcctttttacacataccaacaaaagacaatttactccccca
gi|7 : cctaaataacaaatttatatgtttgtaattcccaacgttcgtacgaatgactttctccgagtagcaattatgggcctgctgaactggggtT-GTGG-AATT--T-------TT--TTTTTA--------TT---GAAATCCT-A--A--T-----------------TGG-TGC---TCCTA-TG-GAATGGA-GGA-G-T--C-AAAT-A-CG-A-GAAA-GG-ACC--ACTTT-TCTTC-AAAGCGCTT-T----TG--T--AATTG-GCA-TAGG-TG-A--AAACGTTT-CCATGACTC-ACATGG-GCTCATCAC-GAgtttatttaaatatatcttgcccattaacaagggaaatgggaactttgatatcctagaccttggtgtcctattatgctggtgttatttcccttttaacacataccaaacaaaacaatttaactccctcaaaaaataaagatattttactataccttcctacctcacatccgagagcaaatcttaatagagagtcggtatttgtgggaaaccat
gi|9 : G-A-----TG------TT--TCCTTA--------TC---GAAA--CT-A--A--TACTNNNNNNNNNNNNNNNNN-NNN---NNNNNATG-AAAGGGA-GAA-G-T--C-AAAT-A-CG-A-GAAA-GG-ATC--GCTTT-TCTTC-AAAGTACTT-T----TG--T--AATCA-GCA-TAGG-TG----AAACATTT-TGAgcatcatcaacgaaatattctgctatttgtaaatatagaatcagacggtgtcaaataacaattaaagacaagtagctctggacaatcttgtgtcctccccccctcccccccccaataaaatattttatcctaacctatacccaaccaactctgatagggtcgggttttggggaaacaaacaattatttatttttggc
gi|8 : t-------TT--TTTTTA--------TC---GAAATCCC-A--A--G-----------------TG--TGC---TCCCAATG-AAAGGCG-GGA-G-T--CCAAAT---CG-AAGAAA-GG-ACC--GCTTC-T-TTC-AAAGCGCTT-T----TG--T--AATCG-GCATTTGG-TG-A--AATTGTTT-CAATgttttatttaatatatcaatatatctgccataagggaaatgaattaacacttgatacgctctagaccttggtgtcctattatgctggtgttatttcctttttacacataccaacaaaaaacaatttaactccccc
gi|15 : CTT-T----TG--GTAAATCA-GCA-TAGG-TG-AATAAATGTTT-CGAttatttaaatatatttgccataaagggaaatgaaatttgatatggccctagaccttggtgtccctatatgctggtgttatttccttttaacacataccaacaaaaaacaatttacccctcaaaataaaaattttacctaccttctaccacacccaacctgatagggtcgggttttgggggaaacaaa
gi|16 : taaaataaaaaaatattgtttgtttcccttaatcctgaccgaacctgacaaaaatcactgcgactggaagatatttattgccaattttggtggacaactttttttttatgaaatcctaagtggtgctccaatgaagggggagacc-TG-A--AAACGTTT-CAATGACTC-ACAGGG-GCTCGTCAC-GAAATATTGACTCTCTATTTTCTGTATgtttctatttaacatatctgccataagggaaatgaaacctt
gi|18 : aaatgG-A--AAATGTTT-CGATGACTC-ACAGGG-GCTCATCAC-AAAATATTGACCCTCTATATTCTGTATtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccaccccaaaaaaatttacctacctacctttaacacacacccaacctgatagggtcgggtttggggaaacaaacaattatttatttttgg
gi|22 : TGACTC-ACAGGG-ACCGGTCAC-GAAATATTAAATGTATATTTTATGTATtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcccccccccc
gi|25 : caatC-ACAGGG-GCTCGTCAC-GAAATATTGACCCTCCTTATTCTATGTt
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Unaligned ( gi|23 ): ACCTGATAGCGTCGGAAGTTTGGGGGAACACAAACGTATTATTTATTTT
Unaligned ( gi|24 ): CTACCTACTCACACCCAACCTGATAGGGTCAGGTTGGGGAAACAAAC
Unaligned ( gi|27 ): CTGATAGGGTCGGGTTTGGGAAAACAAATA
Alignments
lowQualScore : 111111111 1111 111111 22222222222222222 1
lowQualScore : 1 444444444 2 66 3 7 3 3 666 5555 3 444 3 3 3 3 6 3 44 44 222222 2 555 33 2 11111111111111111 2 33 55 2 2 555 4 2 2 2 2 99 2 5 2 2 2 2 2 2 33 2 2 2 5555 66 2 2 88 2 2 5 777 2 5 5 5 1
lowQualScore : . ......... . .. . . . . ... .... . ... . . . . . . .. .. ...... . ... .. . ................. . .. .. . . ... . . . . . .. . . . . . . . . .. . . . .... .. . . .. . . . ... . . . . .
lowQualScore : 0 444444444 7 44 8 5 1 6 444 5555 6 222 1 1 1 1 2 3 66 88 555555 9 000 99 9 22222222222222222 9 99 44 9 9 000 1 7 7 7 7 66 9 7 9 9 9 9 9 9 99 9 9 7 7777 33 9 9 55 9 7 3 666 5 7 7 7 7
consensus : GCCTAAAATAAA-A---T--ATTGTTTG-TTTCCCC-AATCCCGACC-GACCCGA-AAAAA---TCGNC--GCGA-CCG-G-AAGA-A-T-T-TT-ATTGCCAA-TTTT--GT-GTGGA--A---T-T---T--T-TTT--------T---A----TCGAAATCCT-A--A-GT-GGT-GC---TCCTAATG-AAA-GGGA-G-GAG--T-C-AAAT-A-CG-A-GAAA-GG-ACC--GCTTT-TCTTC-AAAGCGCTT-TT----G--T-AA-TCA-GCA-TAG-G-TGA--AAACGTTT-CGATGACTC-ACAGGG-GCTCGTCACG-AAATATTGACCCTCTATATTCTGTAT
Reference ( family-7134 ) : GCCTAAAATAAA-A---T--ATTGTTTG-TTTCCCC-AATCCCGACC-AACCCGA-AAAAA---TCGGC--GCGA-CCG-G-AAGA-A-T-T-TT-ATTGCCAA-TTTT--GT-GTGGA--A---T-T---T--T-TTT--------T---A----TCGAAATCCT-A--A-GT-GGT-GC---TCCTAATG-AAA-GGGA-G-GAG--T-C-AAAT-A-CG-A-GAAA-GG-ACC--GCTTT-TCTTC-AAAGCGCTT-TT----G--T-AA-TCG-GCA-TAG-G-TGA--AAACGTTT-CGATGACTC-ACAGGG-GCTCGTCACG-AAATATTGACCCTCTATATTCTGTAT
gi|1 : -AAGATA-T-T-TT-ATTTCCAAGTTTT--AT-GTAGATAA---T-TATGT--TGTTT--------T---A----TCGAAATCCC-A--A-GT-GTT-GCAGCTGCCAATG-AAG-GGGA-G-GAG--T-C-AAAT-A-CG---GAAC-GG-ACC--GC-TT-TCTTC-AAAGCGCTT-TT----G--TAAA-TCG-GCA-TTG-T-TG---AAATGTTT-CAA
gi|10 : cctaaataacaaatttatatgtttgtaattcccaacgttcgtacgaatgactttctccgagtagcaattatgggcctgctgaactggggt-AATA-A-TGT-TT-A----CAA-TTTT--GA-ATGGA--A---T-T---T--T-TTT------------A----TC-ATATCCT-ATAA-GT-GGT-GC---TCC-AATG-AAA-AGGA-G-GAG--T-C-AAAT-A-CA-A-GAAA-GG-ACC--GCTTT-TCTTC-AAAGCACTT-TT----G--T-AA-TCA-GCA-TAG-G-TGA--AAACGTTT-CAAgtttatttaaatatatcttgcccattaacaagggaaatgggaactttgatatcctagaccttggtgtcctattatgctggtgttatttcccttttaacacataccaaacaaaacaatttaactccctcaaaaaataaagatattttactataccttcctacctcacatccgagagcaaatcttaatagagagtcggtatttgtgggaaaccat
gi|11 : GCCTAAAATAAA-A---T--ATTGTTTG-TTTCTCC-AATCTCGACC-AACCAGA-AAAAG---TTGGC--ACGA-CCG-G-AAGA-A-T-T-TT-ATTGCCAA-TTTT--GT-GTGGA------T-T---T--T-TTT--------T---A----TCGAAATCCT-A--A-TT-GGT-GC---TCCTAATG-AAA-GGGA-G-GAG--T-C-AAAT-A-CG-A-GAAA-GG-ACC--GCTTT-TCTTC-AAAGCGCTT-TT----G--C-AA-TCA-GCA-TAG-A-TGA--AAATGTTT-CGATGACTC-ACAGGG-GCTCATCACA-AAATATTGACCCTCTATATTCTGTATgttttaattaatatatctgccataagggaaacacttaatacgccctagacctcgattttctattatgctggtgttatttcctttttacacataccaacaaaagacaatttactccccca
gi|12 : GCCTAAATTAAA-A---T---TTGTTTG-TTTCCC--AATC--AACC-AACT-GG-AAAAA---TCACT--GCAA-CCG-G-AAGA-A-A-T-TT-ATTACCAA-TTTT--GT-GTGGA--A---T-T---T--T-TTTCTTTTCTCT--------TCGAAATCCT-A--A--T-GGT-GC---TT-TAATG-AAAAGGGA-TCGAG--T-C-AAAT-A--G-A-GAAA-GGCACC--ATTTT-TGTTC-AAAG-GCTT-TTTTATG--T-AA-TCA-GAA-TAG-G-TGG--AAA-GTTT-C
gi|13 : CCTAAATTAAA-A---T---TTGTTTG-TTTCCCC-AATCCCAACC-AACTGGA-AAAAA---TCACT--GCAA-CCG-G-AAGA-A-T-T-TT-ATTACCAA-TTTT--GT-GTGGA--A---T-T---T--T-TTT--------T---TCTCTTCGAAATCCT-A--A-GT-GGT-GC---T-TTAATG-AAA-GGGATC-GAG--T-C-AAAT-A-CG-A-GAAA-GG-ACC--ATTTT-TGTTC-AAAGCGCTT-TT----G--T-AA-TCA-GCA-TAG-G-TGA--AAACGTTT-CGAcgagtctatttaatatatctgccatacggaaacaatgaa
gi|14 : GCCAAAAATAAA-T---A--ATTGTTCG-TTTCCCC-AAACCCTACC-gttctatttaatatatctgccataaggaaacaat
gi|15 : ggaaatgaacacttgatacgccctagaccttggtgtcctacatatgtattatgctggtgttatttcctttttacacataccaacaaaaaacaattcccccatcccaaaataaaatattttacctacctaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgcctacctacctacctgctagTAAAATAAA-AAAAT--ATTGTTTG-TTTCCCTTAATCCTGACCGAACCTGACAAAAA---TCACT--GCGA-CTG-G-AAGA-T-A-T-TT-ATTGCCAA-TTTT--G--GTGGAC-AACTT-T---T--T-TTT--------T---A----T-GAAATCCT-A--A-GT-GGT-GC---TCC-AATG-AAG-GGGG-A-GAc
gi|15 : CTT-TT----GG-T-AAATCA-GCA-TAG-G-TGAATAAATGTTT-CGAcccttttggtaaatcagcataggtgaataaatgtttcgagtttctatttaacatatctgccataagggaaatgaaacctt
gi|16 : taaaataaaaaaatattgtttgtttcccttaatcctgaccgaacctgacaaaaatcactgcgactggaagatatttattgccaattttggtggacaactttttttttatgaaatcctaagtggtgctccaatgaagggggagacc-G-TGA--AAACGTTT-CAATGACTC-ACAGGG-GCTCGTCACG-AAATATTGACTCTCTATTTTCTGTATgtttctatttaacatatctgccataagggaaatgaaacctt
gi|16 : aaatCCAAAAATAAA-T---A--ATTGTTTG-TTTCCCC-AAACCCGACC-tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccaccccaaaaaaatttacctacctacctttaacacacacccaacctgatagggtcgggtttggggaaacaaacaattatttatttttgg
gi|17 : aaatgtgaaaacgtttcaatgactcacaggggctcgtcacgaaatattgactctctattttctgtattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccaccccaaaaaaatttacctacctacctttaacacacacccaacctgatagGCCTAAAATAAA-A---T--ACTGTTTG-TTTCCCC-AATCTTGACCCGACCCGA-AAAAA---TTGGT--GTGA-CTG-A-AAGA-A-T-T-TC-ATTGCCAA-TATT--GT-GTGGA--A---TCT---T--T-TTT--------T---A----TCGAAATCCT-A--A--T-TGT--C---TCCT-ATG-AAA-GGAA-G-GAG--T-CAAAATAA-CGAA-GAAA-GG-ACC--ACTTTCCCTTC-AAAGTGCTT-TT----G--
gi|18 : GA--AAATGTTT-CGATGACTC-ACAGGG-GCTCATCACA-AAATATTGACCCTCTATATTCTGTATcta
gi|19 : TAAAATGAA-A---T--ATTGTTTG-TTTCCCT-AATCTCGACC-GACCCGA-AAAAA---TTTAC--GCAA-CCG-G-AAGA-A-T-T-TT-Atnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcccccccccc
gi|2 : CTAAAATAAA-----T--ATTGTTTTCTTTCCCC---TCCCAACCCAACCCGA-AAAAAATCTCG-CTTGCGA-CTG-GGAAGA-A-T-T-TTGATTGCCAA-TTTT--GTTGTGGA--AA--T-T---T--G-TTT--------T---A----TCGAAATCCTTA--A-GT-GGT-GC---TCCTAATG-AAA-GAGA-G-GAAA-T-C-AAAT-AACT-G-GAAA-G--ACT--GTTTT-CTTTC-AAAGCGCTT-TA----G--T-AA-TC--GCA-TAG-GTTGA--AAACATTT-CGA
gi|20 : GCCAAAAATAAA-T---A--ATTGTTTG-TTTCCCC-AAAACCG-CG-GACCCgttgttcattttaataatctccataaggaaatgacacttttgattactccctagccttggtgtcctttatggtggtgttatttcctttttgcacaaccaacaaaacaacaatttaccccccctccccctcccccccccccaataaaaaaaaaaaattttacgttacctacctatccacacccaaagctgatagggtcaggtttgggacacaaaaattacttatttttttg
gi|22 : acccacacccaaacctgataTGACTC-ACAGGG-ACCGGTCACG-AAATATTAAATGTATATTTTATGTAT
gi|25 : caatC-ACAGGG-GCTCGTCACG-AAATATTGACCCTCCTTATTCTATGTt
gi|26 : GCCAAAAATAAATA---TTAATTGTTTG-TTTCTGC-AAACCCGACC-gt
gi|3 : agAAATAAA-A---T----TGTTTG-TTTTCC--AATCACGACC------GA-AAAAA---TTTGCT-GCGA-CTG-G-AAGA-A-T-T-TT-TATGCCA---TTT--GT-GTGGA--A---T-T---T--T-TTT--------TTTAA----TCAAAAT-CT-A--A-GT-GGT-GC---TTC--ATG-AAA-GGAA-G-GAGTAT-C--AAT-A-CG-A-GAAATGG-AGC--ATATT-TCTTC-AAAGTGCTT-GT----G--T-AA-TCA-GCA-TAG-G-TG----AACATTT-CGAc
gi|4 : tCAA-AAAAA---ACG-C--GCGATCCGTG-AAGA-AAT-TATTGATTGCCAA-TTTT--G--GTGGA--A---T-T---T--T-TTT--------TTTTA----TCGAAATCTT-A--ATGTTGGTTGC---TCC-AATG-AAA-GGGA-G-AAGG-T-C-AAAT-A-CT-A-GAAA-GG-ACCCTGCTTT-TCTTC-AAATTGCTTCTT----G-------TCA-GCA-TAG-GTTGA--AAACGTTT-CAATGgttttaaaatttaatatatctgttcccataaagggacgaatgacactgatacacacactttgggtgtctcgttatgctggtgtattttcctttttacacatacccaaaaaaacataattcccccccccccccataaataaaataatcttacctcctattactctactcacacccaactgaaataagggtcggtttggggtaaacaaagaattatttatttttt
gi|5 : ccgaCTTAAAATAAA-A---T--ATTGTTTG-TTTCCC--AA-CTCGACG-ACCCTGA-AAAAA---TCGCT--GCAA-CCG---AAGA-A-T-T-TT-AAAAGCAA-ATTCAAGC-GTG-A--T---T-T---T--T-TTT--------T---A----TCGAAATCTT-A--A-GT-GGT-GC---TCC-AATGAAAA-GGGG-A-GAG--TCC-AAAT-A-CG-A-GAA---G-ACT--GCTTT-TCATCAAAAGCACTT-TT----GAAC-AA-TCATGTA-TAG-G-CCA--AAACCTTTGCGAttttatttaatatatctccataagggaaatgaaatcacgttgatacgccttacgacctggggttcctattatcactctggtagttatatttctcttagtctacacttacccaaactagacaaacatgatcacccccttccctcccaaatgaaaatcagtttactatctttctaccctaaccacatgaatagggtcgggatttgtggaaacataaa
gi|6 : C-AATCTCGACC-AACACGA-AAAAA---TTGGC--ACGA-CCA-A-AAGA-A-T-T-TT-ATTGCCAA-TTTT--GT-GTGGA--A---T-T---TTAT-TTT--------T---A----TCTAAATCCT-A--A-TT-GGT-GC---TCC-GATG-AAA-GGGA-G-GAG--T-C-GAAT-A-CG-A-GAAA-GT-ACC--ACTTT-TCTTC-AAAGCACTT-TT----G--T-AA-C---GCA-TAATG-TG---AAACGTTT-CAATAACTCGACAGGGAGCTCAACACGAAAATACTGACCCTC--TATTCTGTATgtttatctgctaaacggaaatgaacacttgattcgccctatgagaccctttgatgttctatatatgctggtgtttatttcctttttacacataccaaaaaaataatttaagcccacctccaaatatgaaaatagtttacctacctacctaccacatccaaccgatagggtcgggtttgggaaacat
gi|6 : AAAATAAA-T---A--ATTGTTTG-TTT--CC-AAACCCGACC-ttgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtccccccccccccaccccaaataaatatatttacctaccttacctacccacaccaactgaaagggtcgggtttggaaacaaacaattatttatttttg
gi|7 : caatctcgaccaacacgaaaaaattggcacgaccaaaagaattttattgccaattttgtgtggaattttatttttatctaaatcctaattggtgctccgatgaaagggaggagtcgaatacgagaaagtaccacttttcttcaaagcacttttgtaacgcataatgtgaaacgtttcaataactcgacagggagctcaacacgaaaatactgaccctctattctgtatttgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtccccccccccccaccccaaataaatatatttacctaccttacctacccacaccaactgaaagT-GTGGA--A---T-T---T--T-TTT--------TTT-A----TTGAAATCCT-A--A-TT-GGT-GC---TCCTA-TG-GAA-TGGA-G-GAG--T-C-AAAT-A-CG-A-GAAA-GG-ACC--ACTTT-TCTTC-AAAGCGCTT-TT----G--T-AA-TTG-GCA-TAG-G-TGA--AAACGTTT-CCATGACTC-ACATGG-GCTCATCACG-Atg
gi|7 : GCCAAAAATAAA-T---A--ATTGTTTG-TTTCCCCAAAACCCGACC-gcatcatcaacgaaatattctgctatttgtaaatatagaatcagacggtgtcaaataacaattaaagacaagtagctctggacaatcttgtgtcctccccccctcccccccccaataaaatattttatcctaacctatacccaaccaactctgatagggtcgggttttggggaaacaaacaattatttatttttggc
gi|8 : tgtggaattttttttttattgaaatcctaattggtgctcctatggaatggaggagtcaaatacgagaaaggaccacttttcttcaaagcgcttttgtaattggcataggtgaaaacgtttccatgactcacatgggctcatcacgagcatcatcaacgaaatattctgctatttgtaaatatagaatcagacggtgtcaaataacaattaaagacaagtagctctggacaatcttgtgtcctccccccctcccccccccaataaaatattttatcctaacctatacccaaccaactctgatag-T---T--T-TTT--------T---A----TCGAAATCCC-A--A-GT-G-T-GC---TCCCAATG-AAA-GGCG-G-GAG--T-CCAAAT---CG-AAGAAA-GG-ACC--GCTTC-T-TTC-AAAGCGCTT-TT----G--T-AA-TCG-GCATTTG-G-TGA--AATTGTTT-CAAT
gi|9 : ATG-AAA-GGGA-G-AAG--T-C-AAAT-A-CG-A-GAAA-GG-ATC--GCTTT-TCTTC-AAAGTACTT-TT----G--T-AA-TCA-GCA-TAG-G-TG---AAACATTT-TGAttatttaaatatatttgccataaagggaaatgaaatttgatatggccctagaccttggtgtccctatatgctggtgttatttccttttaacacataccaacaaaaaacaatttacccctcaaaataaaaattttacctaccttctaccacacccaacctgatagggtcgggttttgggggaaacaaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Unaligned ( gi|23 ): ACCTGATAGCGTCGGAAGTTTGGGGGAACACAAACGTATTATTTATTTT
Unaligned ( gi|24 ): CTACCTACTCACACCCAACCTGATAGGGTCAGGTTGGGGAAACAAAC
Unaligned ( gi|27 ): CTGATAGGGTCGGGTTTGGGAAAACAAATA
Alignments
lowQualScore : 111111111 111111 22222222222222222 1
lowQualScore : 1 444444444 2 66 3 4 3 888 3 666 888 3 444 3 3 3 3 6 3 44 44 222222 2 555 33 2 11111111111111111 2 33 55 2 2 555 4 2 2 2 2 99 2 5 2 2 2 2 2 2 33 2 2 2 5555 66 2 2 2 2 2 5 777 2 5 5 5 1
lowQualScore : . ......... . .. . . . ... . ... ... . ... . . . . . . .. .. ...... . ... .. . ................. . .. .. . . ... . . . . . .. . . . . . . . . .. . . . .... .. . . . . . . ... . . . . .
lowQualScore : 0 444444444 7 44 8 7 3 222 6 444 444 6 222 1 1 1 1 2 3 66 88 555555 9 000 99 9 22222222222222222 9 99 44 9 9 000 1 7 7 7 7 66 9 7 9 9 9 9 9 9 99 9 9 7 7777 33 9 9 9 9 7 3 666 5 7 7 7 7
consensus : GCCTAAAATAAA-A---T--ATTGTTTG-TTTCCCC-AATCCCGACC-GA-CCC-GA-AAAAA---TCGCC-GCGA-CCG-G-AAGA-A-T-T-TT-ATTGCCAA-TTTT--GT-GTGGA--A---T-T---T--T-TTT--------T---A----TCGAAATCCT-A--A-GT-GGT-GC---TCCTAATG-AAA-GGGA-G-GAG--T-C-AAAT-A-CG-A-GAAA-GG-ACC--GCTTT-TCTTC-AAAGCGCTT-TT----G--T-AA-TCA-GCA-TAG-G-TGA--AAACGTTT-CGATGACTC-ACAGGG-GCTCGTCACG-AAATATTGACCCTCTATATTCTGTAT
Reference ( family-7134 ) : GCCTAAAATAAA-A---T--ATTGTTTG-TTTCCCC-AATCCCGACC-GA-CCC-GA-AAAAA---TCGNC-GCGA-CCG-G-AAGA-A-T-T-TT-ATTGCCAA-TTTT--GT-GTGGA--A---T-T---T--T-TTT--------T---A----TCGAAATCCT-A--A-GT-GGT-GC---TCCTAATG-AAA-GGGA-G-GAG--T-C-AAAT-A-CG-A-GAAA-GG-ACC--GCTTT-TCTTC-AAAGCGCTT-TT----G--T-AA-TCA-GCA-TAG-G-TGA--AAACGTTT-CGATGACTC-ACAGGG-GCTCGTCACG-AAATATTGACCCTCTATATTCTGTAT
gi|1 : -AAGATA-T-T-TT-ATTTCCAAGTTTT--AT-GTAGATAA---T-TATGT--TGTTT--------T---A----TCGAAATCCC-A--A-GT-GTT-GCAGCTGCCAATG-AAG-GGGA-G-GAG--T-C-AAAT-A-CG---GAAC-GG-ACC--GC-TT-TCTTC-AAAGCGCTT-TT----G--TAAA-TCG-GCA-TTG-T-TG---AAATGTTT-CAA
gi|10 : cctaaataacaaatttatatgtttgtaattcccaacgttcgtacgaatgactttctccgagtagcaattatgggcctgctgaactggggt-AATA-A-TGT-TT-A----CAA-TTTT--GA-ATGGA--A---T-T---T--T-TTT------------A----TC-ATATCCT-ATAA-GT-GGT-GC---TCC-AATG-AAA-AGGA-G-GAG--T-C-AAAT-A-CA-A-GAAA-GG-ACC--GCTTT-TCTTC-AAAGCACTT-TT----G--T-AA-TCA-GCA-TAG-G-TGA--AAACGTTT-CAAgtttatttaaatatatcttgcccattaacaagggaaatgggaactttgatatcctagaccttggtgtcctattatgctggtgttatttcccttttaacacataccaaacaaaacaatttaactccctcaaaaaataaagatattttactataccttcctacctcacatccgagagcaaatcttaatagagagtcggtatttgtgggaaaccat
gi|11 : GCCTAAAATAAA-A---T--ATTGTTTG-TTTCTCC-AATCTCGACC-AA-CCA-GA-AAAAG---TTGGC-ACGA-CCG-G-AAGA-A-T-T-TT-ATTGCCAA-TTTT--GT-GTGGA------T-T---T--T-TTT--------T---A----TCGAAATCCT-A--A-TT-GGT-GC---TCCTAATG-AAA-GGGA-G-GAG--T-C-AAAT-A-CG-A-GAAA-GG-ACC--GCTTT-TCTTC-AAAGCGCTT-TT----G--C-AA-TCA-GCA-TAG-A-TGA--AAATGTTT-CGATGACTC-ACAGGG-GCTCATCACA-AAATATTGACCCTCTATATTCTGTATgttttaattaatatatctgccataagggaaacacttaatacgccctagacctcgattttctattatgctggtgttatttcctttttacacataccaacaaaagacaatttactccccca
gi|12 : GCCTAAATTAAA-A---T---TTGTTTG-TTTCCC--AATC--AACC-AA-CT--GG-AAAAA---TCACT-GCAA-CCG-G-AAGA-A-A-T-TT-ATTACCAA-TTTT--GT-GTGGA--A---T-T---T--T-TTTCTTTTCTCT--------TCGAAATCCT-A--A--T-GGT-GC---TT-TAATG-AAAAGGGA-TCGAG--T-C-AAAT-A--G-A-GAAA-GGCACC--ATTTT-TGTTC-AAAG-GCTT-TTTTATG--T-AA-TCA-GAA-TAG-G-TGG--AAA-GTTT-C
gi|13 : CCTAAATTAAA-A---T---TTGTTTG-TTTCCCC-AATCCCAACC-AA-CTG-GA-AAAAA---TCACT-GCAA-CCG-G-AAGA-A-T-T-TT-ATTACCAA-TTTT--GT-GTGGA--A---T-T---T--T-TTT--------T---TCTCTTCGAAATCCT-A--A-GT-GGT-GC---T-TTAATG-AAA-GGGATC-GAG--T-C-AAAT-A-CG-A-GAAA-GG-ACC--ATTTT-TGTTC-AAAGCGCTT-TT----G--T-AA-TCA-GCA-TAG-G-TGA--AAACGTTT-CGAcgagtctatttaatatatctgccatacggaaacaatgaa
gi|14 : GCCAAAAATAAA-T---A--ATTGTTCG-TTTCCCC-AAACCCTACC-gttctatttaatatatctgccataaggaaacaat
gi|15 : ggaaatgaacacttgatacgccctagaccttggtgtcctacatatgtattatgctggtgttatttcctttttacacataccaacaaaaaacaattcccccatcccaaaataaaatattttacctacctaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgcctacctacctacctgctagTAAAATAAA-AAAAT--ATTGTTTG-TTTCCCTTAATCCTGACC-GAACCT-GACAAAAA---TCACT-GCGA-CTG-G-AAGA-T-A-T-TT-ATTGCCAA-TTTT--G--GTGGAC-AACTT-T---T--T-TTT--------T---A----T-GAAATCCT-A--A-GT-GGT-GC---TCC-AATG-AAG-GGGG-A-GAc
gi|15 : CTT-TT----GG-T-AAATCA-GCA-TAG-G-TGAATAAATGTTT-CGAcccttttggtaaatcagcataggtgaataaatgtttcgagtttctatttaacatatctgccataagggaaatgaaacctt
gi|16 : taaaataaaaaaatattgtttgtttcccttaatcctgaccgaacctgacaaaaatcactgcgactggaagatatttattgccaattttggtggacaactttttttttatgaaatcctaagtggtgctccaatgaagggggagacc-G-TGA--AAACGTTT-CAATGACTC-ACAGGG-GCTCGTCACG-AAATATTGACTCTCTATTTTCTGTATgtttctatttaacatatctgccataagggaaatgaaacctt
gi|16 : aaatCCAAAAATAAA-T---A--ATTGTTTG-TTTCCCC-AAACCCGACC-tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccaccccaaaaaaatttacctacctacctttaacacacacccaacctgatagggtcgggtttggggaaacaaacaattatttatttttgg
gi|17 : aaatgtgaaaacgtttcaatgactcacaggggctcgtcacgaaatattgactctctattttctgtattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccaccccaaaaaaatttacctacctacctttaacacacacccaacctgatagGCCTAAAATAAA-A---T--ACTGTTTG-TTTCCCC-AATCTTGACCCGA-CCC-GA-AAAAA---TTGGT-GTGA-CTG-A-AAGA-A-T-T-TC-ATTGCCAA-TATT--GT-GTGGA--A---TCT---T--T-TTT--------T---A----TCGAAATCCT-A--A--T-TGT--C---TCCT-ATG-AAA-GGAA-G-GAG--T-CAAAATAA-CGAA-GAAA-GG-ACC--ACTTTCCCTTC-AAAGTGCTT-TT----G--
gi|18 : GA--AAATGTTT-CGATGACTC-ACAGGG-GCTCATCACA-AAATATTGACCCTCTATATTCTGTATcta
gi|19 : TAAAATGAA-A---T--ATTGTTTG-TTTCCCT-AATCTCGACC-GA-CCC-GA-AAAAA---TTTAC-GCAA-CCG-G-AAGA-A-T-T-TT-Atnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcccccccccc
gi|2 : CTAAAATAAA-----T--ATTGTTTTCTTTCCCC---TCCCAACCCAA-CCC-GA-AAAAAATCTCGCTTGCGA-CTG-GGAAGA-A-T-T-TTGATTGCCAA-TTTT--GTTGTGGA--AA--T-T---T--G-TTT--------T---A----TCGAAATCCTTA--A-GT-GGT-GC---TCCTAATG-AAA-GAGA-G-GAAA-T-C-AAAT-AACT-G-GAAA-G--ACT--GTTTT-CTTTC-AAAGCGCTT-TA----G--T-AA-TC--GCA-TAG-GTTGA--AAACATTT-CGA
gi|20 : GCCAAAAATAAA-T---A--ATTGTTTG-TTTCCCC-AAAACCG-CG-GA-CCC-gttgttcattttaataatctccataaggaaatgacacttttgattactccctagccttggtgtcctttatggtggtgttatttcctttttgcacaaccaacaaaacaacaatttaccccccctccccctcccccccccccaataaaaaaaaaaaattttacgttacctacctatccacacccaaagctgatagggtcaggtttgggacacaaaaattacttatttttttg
gi|22 : acccacacccaaacctgataTGACTC-ACAGGG-ACCGGTCACG-AAATATTAAATGTATATTTTATGTAT
gi|25 : caatC-ACAGGG-GCTCGTCACG-AAATATTGACCCTCCTTATTCTATGTt
gi|26 : GCCAAAAATAAATA---TTAATTGTTTG-TTTCTGC-AAACCCGACC-gt
gi|3 : agAAATAAA-A---T----TGTTTG-TTTTCC--AATCACGACC-GA------A-AAAAT---TTGCT-GCGA-CTG-G-AAGA-A-T-T-TT-TATGCCA---TTT--GT-GTGGA--A---T-T---T--T-TTT--------TTTAA----TCAAAAT-CT-A--A-GT-GGT-GC---TTC--ATG-AAA-GGAA-G-GAGTAT-C--AAT-A-CG-A-GAAATGG-AGC--ATATT-TCTTC-AAAGTGCTT-GT----G--T-AA-TCA-GCA-TAG-G-TG----AACATTT-CGAc
gi|4 : tCC-GA-C---AA-AAAAA---ACG-C-GCGATCCGTG-AAGA-AAT-TATTGATTGCCAA-TTTT--G--GTGGA--A---T-T---T--T-TTT--------TTTTA----TCGAAATCTT-A--ATGTTGGTTGC---TCC-AATG-AAA-GGGA-G-AAGG-T-C-AAAT-A-CT-A-GAAA-GG-ACCCTGCTTT-TCTTC-AAATTGCTTCTT----G--T-----CA-GCA-TAG-GTTGA--AAACGTTT-CAATGgttttaaaatttaatatatctgttcccataaagggacgaatgacactgatacacacactttgggtgtctcgttatgctggtgtattttcctttttacacatacccaaaaaaacataattcccccccccccccataaataaaataatcttacctcctattactctactcacacccaactgaaataagggtcggtttggggtaaacaaagaattatttatttttt
gi|5 : CTTAAAATAAA-A---T--ATTGTTTG-TTTCCC--AA-CTCGAC--GA-CCCTGA-AAAAA---TCGCT-GCAA-CCG---AAGA-A-T-T-TT-AAAAGCAA-ATTCAAGC-GTG-A--T---T-T---T--T-TTT--------T---A----TCGAAATCTT-A--A-GT-GGT-GC---TCC-AATGAAAA-GGGG-A-GAG--TCC-AAAT-A-CG-A-GAA---G-ACT--GCTTT-TCATCAAAAGCACTT-TT----GAAC-AA-TCATGTA-TAG-G-CCA--AAACCTTTGCGAttttatttaatatatctccataagggaaatgaaatcacgttgatacgccttacgacctggggttcctattatcactctggtagttatatttctcttagtctacacttacccaaactagacaaacatgatcacccccttccctcccaaatgaaaatcagtttactatctttctaccctaaccacatgaatagggtcgggatttgtggaaacataaa
gi|6 : C-AATCTCGACC-AA-CAC-GA-AAAAA---TTGGC-ACGA-CCA-A-AAGA-A-T-T-TT-ATTGCCAA-TTTT--GT-GTGGA--A---T-T---TTAT-TTT--------T---A----TCTAAATCCT-A--A-TT-GGT-GC---TCC-GATG-AAA-GGGA-G-GAG--T-C-GAAT-A-CG-A-GAAA-GT-ACC--ACTTT-TCTTC-AAAGCACTT-TT----G--T-AA-C---GCA-TAATG-TG---AAACGTTT-CAATAACTCGACAGGGAGCTCAACACGAAAATACTGACCCTC--TATTCTGTATgtttatctgctaaacggaaatgaacacttgattcgccctatgagaccctttgatgttctatatatgctggtgtttatttcctttttacacataccaaaaaaataatttaagcccacctccaaatatgaaaatagtttacctacctacctaccacatccaaccgatagggtcgggtttgggaaacat
gi|6 : AAAATAAA-T---A--ATTGTTTG-TTT--CC-AAACCCGACC-ttgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtccccccccccccaccccaaataaatatatttacctaccttacctacccacaccaactgaaagggtcgggtttggaaacaaacaattatttatttttg
gi|7 : caatctcgaccaacacgaaaaaattggcacgaccaaaagaattttattgccaattttgtgtggaattttatttttatctaaatcctaattggtgctccgatgaaagggaggagtcgaatacgagaaagtaccacttttcttcaaagcacttttgtaacgcataatgtgaaacgtttcaataactcgacagggagctcaacacgaaaatactgaccctctattctgtatttgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtccccccccccccaccccaaataaatatatttacctaccttacctacccacaccaactgaaagT-GTGGA--A---T-T---T--T-TTT--------TTT-A----TTGAAATCCT-A--A-TT-GGT-GC---TCCTA-TG-GAA-TGGA-G-GAG--T-C-AAAT-A-CG-A-GAAA-GG-ACC--ACTTT-TCTTC-AAAGCGCTT-TT----G--T-AA-TTG-GCA-TAG-G-TGA--AAACGTTT-CCATGACTC-ACATGG-GCTCATCACG-Atg
gi|7 : GCCAAAAATAAA-T---A--ATTGTTTG-TTTCCCCAAAACCCGACC-gcatcatcaacgaaatattctgctatttgtaaatatagaatcagacggtgtcaaataacaattaaagacaagtagctctggacaatcttgtgtcctccccccctcccccccccaataaaatattttatcctaacctatacccaaccaactctgatagggtcgggttttggggaaacaaacaattatttatttttggc
gi|8 : tgtggaattttttttttattgaaatcctaattggtgctcctatggaatggaggagtcaaatacgagaaaggaccacttttcttcaaagcgcttttgtaattggcataggtgaaaacgtttccatgactcacatgggctcatcacgagcatcatcaacgaaatattctgctatttgtaaatatagaatcagacggtgtcaaataacaattaaagacaagtagctctggacaatcttgtgtcctccccccctcccccccccaataaaatattttatcctaacctatacccaaccaactctgatag-T---T--T-TTT--------T---A----TCGAAATCCC-A--A-GT-G-T-GC---TCCCAATG-AAA-GGCG-G-GAG--T-CCAAAT---CG-AAGAAA-GG-ACC--GCTTC-T-TTC-AAAGCGCTT-TT----G--T-AA-TCG-GCATTTG-G-TGA--AATTGTTT-CAAT
gi|9 : ATG-AAA-GGGA-G-AAG--T-C-AAAT-A-CG-A-GAAA-GG-ATC--GCTTT-TCTTC-AAAGTACTT-TT----G--T-AA-TCA-GCA-TAG-G-TG---AAACATTT-TGAttatttaaatatatttgccataaagggaaatgaaatttgatatggccctagaccttggtgtccctatatgctggtgttatttccttttaacacataccaacaaaaaacaatttacccctcaaaataaaaattttacctaccttctaccacacccaacctgatagggtcgggttttgggggaaacaaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Unaligned ( gi|23 ): ACCTGATAGCGTCGGAAGTTTGGGGGAACACAAACGTATTATTTATTTT
Unaligned ( gi|24 ): CTACCTACTCACACCCAACCTGATAGGGTCAGGTTGGGGAAACAAAC
Unaligned ( gi|27 ): CTGATAGGGTCGGGTTTGGGAAAACAAATA
Alignments
lowQualScore : 11111111111 11111111 11111111 111111 22222222222222222 1
lowQualScore : 0 33 66666666666 2 33 66 2 3 444 4 3 33333333 77 555 11111111 44 3 3 888 3 3 3 3 6 3 44 44 222222 2 555 33 2 11111111111111111 2 33 55 2 2 555 4 2 2 2 2 99 2 5 2 2 2 2 2 2 33 2 2 2 5555 66 2 2 2 2 2 5 777 2 5 5 5 1
lowQualScore : . .. ........... . .. .. . . ... . . ........ .. ... ........ .. . . ... . . . . . . .. .. ...... . ... .. . ................. . .. .. . . ... . . . . . .. . . . . . . . . .. . . . .... .. . . . . . . ... . . . . .
lowQualScore : 3 44 22222222222 5 44 99 4 1 111 4 1 77777777 99 888 77777777 66 3 3 555 1 1 1 1 2 3 66 88 555555 9 000 99 9 22222222222222222 9 99 44 9 9 000 1 7 7 7 7 66 9 7 9 9 9 9 9 9 99 9 9 7 7777 33 9 9 9 9 7 3 666 5 7 7 7 7
consensus : GCCTAAA--ATAAA---A---T--ATTGTTTG-T--TTCCCC-A-ATCC---CGACC-GA-C-----CC-GA--AAAAA---TC----GCC-GC--GA-CCG-G---AAGA-A-T-T-TT-ATTGCCAA-TTTT--GT-GTGGA--A---T-T---T--T-TTT--------T---A----TCGAAATCCT-A--A-GT-GGT-GC---TCCTAATG-AAA-GGGA-G-GAG--T-C-AAAT-A-CG-A-GAAA-GG-ACC--GCTTT-TCTTC-AAAGCGCTT-TT----G--T-AA-TCA-GCA-TAG-G-TGA--AAACGTTT-CGATGACTC-ACAGGG-GCTCGTCACG-AAATATTGACCCTCTATATTCTGTAT
Reference ( family-7134 ) : GCCTAAA--ATAAA---A---T--ATTGTTTG-T--TTCCCC-A-ATCC---CGACC-GA-C-----CC-GA--AAAAA---TC----GCC-GC--GA-CCG-G---AAGA-A-T-T-TT-ATTGCCAA-TTTT--GT-GTGGA--A---T-T---T--T-TTT--------T---A----TCGAAATCCT-A--A-GT-GGT-GC---TCCTAATG-AAA-GGGA-G-GAG--T-C-AAAT-A-CG-A-GAAA-GG-ACC--GCTTT-TCTTC-AAAGCGCTT-TT----G--T-AA-TCA-GCA-TAG-G-TGA--AAACGTTT-CGATGACTC-ACAGGG-GCTCGTCACG-AAATATTGACCCTCTATATTCTGTAT
gi|1 : CCTAAATAACAAATTTA---T--AT-GTTTG-TAATTCCCA-ACGTTCGTACGAAT-GA-CTTTCTCC-GAGTAGCAA---TTATGGGCCTGCTGAA-CTG-GGGTAAGATA-T-T-TT-ATTTCCAAGTTTT--AT-GTAGATAA---T-TATGT--TGTTT--------T---A----TCGAAATCCC-A--A-GT-GTT-GCAGCTGCCAATG-AAG-GGGA-G-GAG--T-C-AAAT-A-CG---GAAC-GG-ACC--GC-TT-TCTTC-AAAGCGCTT-TT----G--TAAA-TCG-GCA-TTG-T-TG---AAATGTTT-CAA
gi|10 : ---AATA-A-TGT-TT-A----CAA-TTTT--GA-ATGGA--A---T-T---T--T-TTT------------A----TC-ATATCCT-ATAA-GT-GGT-GC---TCC-AATG-AAA-AGGA-G-GAG--T-C-AAAT-A-CA-A-GAAA-GG-ACC--GCTTT-TCTTC-AAAGCACTT-TT----G--T-AA-TCA-GCA-TAG-G-TGA--AAACGTTT-CAAgtttatttaaatatatcttgcccattaacaagggaaatgggaactttgatatcctagaccttggtgtcctattatgctggtgttatttcccttttaacacataccaaacaaaacaatttaactccctcaaaaaataaagatattttactataccttcctacctcacatccgagagcaaatcttaatagagagtcggtatttgtgggaaaccat
gi|11 : GCCTAAA--ATAAA---A---T--ATTGTTTG-T--TTCTCC-A-ATCT---CGACC-AA-C-----CA-GA--AAAAG---TT----GGC-AC--GA-CCG-G---AAGA-A-T-T-TT-ATTGCCAA-TTTT--GT-GTGGA------T-T---T--T-TTT--------T---A----TCGAAATCCT-A--A-TT-GGT-GC---TCCTAATG-AAA-GGGA-G-GAG--T-C-AAAT-A-CG-A-GAAA-GG-ACC--GCTTT-TCTTC-AAAGCGCTT-TT----G--C-AA-TCA-GCA-TAG-A-TGA--AAATGTTT-CGATGACTC-ACAGGG-GCTCATCACA-AAATATTGACCCTCTATATTCTGTATgttttaattaatatatctgccataagggaaacacttaatacgccctagacctcgattttctattatgctggtgttatttcctttttacacataccaacaaaagacaatttactccccca
gi|12 : GCCTAAA--TTAAA---A---T---TTGTTTG-T--TTCCC--A-ATC-----AACC-AA-C-----T--GG--AAAAA---TC----ACT-GC--AA-CCG-G---AAGA-A-A-T-TT-ATTACCAA-TTTT--GT-GTGGA--A---T-T---T--T-TTTCTTTTCTCT--------TCGAAATCCT-A--A--T-GGT-GC---TT-TAATG-AAAAGGGA-TCGAG--T-C-AAAT-A--G-A-GAAA-GGCACC--ATTTT-TGTTC-AAAG-GCTT-TTTTATG--T-AA-TCA-GAA-TAG-G-TGG--AAA-GTTT-C
gi|13 : CCTAAA--TTAAA---A---T---TTGTTTG-T--TTCCCC-A-ATCC---CAACC-AA-C-----TG-GA--AAAAA---TC----ACT-GC--AA-CCG-G---AAGA-A-T-T-TT-ATTACCAA-TTTT--GT-GTGGA--A---T-T---T--T-TTT--------T---TCTCTTCGAAATCCT-A--A-GT-GGT-GC---T-TTAATG-AAA-GGGATC-GAG--T-C-AAAT-A-CG-A-GAAA-GG-ACC--ATTTT-TGTTC-AAAGCGCTT-TT----G--T-AA-TCA-GCA-TAG-G-TGA--AAACGTTT-CGAcgagtctatttaatatatctgccatacggaaacaatgaa
gi|14 : GCCAAAA--ATAAA---T---A--ATTGTTCG-T--TTCCCC-A-AACC---CTACC-gttctatttaatatatctgccataaggaaacaat
gi|15 : ggaaatgaacacttgatacgccctagaccttggtgtcctacatatgtattatgctggtgttatttcctttttacacataccaacaaaaaacaattcccccatcccaaaataaaatattttacctacctaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgcctacctacctacctgctagTAAA--ATAAA---AAAAT--ATTGTTTG-T--TTCCCTTA-ATCC---TGACC-GAAC-----CT-GAC-AAAAA---TC----ACT-GC--GA-CTG-G---AAGA-T-A-T-TT-ATTGCCAA-TTTT--G--GTGGAC-AACTT-T---T--T-TTT--------T---A----T-GAAATCCT-A--A-GT-GGT-GC---TCC-AATG-AAG-GGGG-A-GAc
gi|15 : CTT-TT----GG-T-AAATCA-GCA-TAG-G-TGAATAAATGTTT-CGAcccttttggtaaatcagcataggtgaataaatgtttcgagtttctatttaacatatctgccataagggaaatgaaacctt
gi|16 : taaaataaaaaaatattgtttgtttcccttaatcctgaccgaacctgacaaaaatcactgcgactggaagatatttattgccaattttggtggacaactttttttttatgaaatcctaagtggtgctccaatgaagggggagacc-G-TGA--AAACGTTT-CAATGACTC-ACAGGG-GCTCGTCACG-AAATATTGACTCTCTATTTTCTGTATgtttctatttaacatatctgccataagggaaatgaaacctt
gi|16 : aaatCCAAAA--ATAAA---T---A--ATTGTTTG-T--TTCCCC-A-AACC---CGACC-tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccaccccaaaaaaatttacctacctacctttaacacacacccaacctgatagggtcgggtttggggaaacaaacaattatttatttttgg
gi|17 : aaatgtgaaaacgtttcaatgactcacaggggctcgtcacgaaatattgactctctattttctgtattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccaccccaaaaaaatttacctacctacctttaacacacacccaacctgatagGCCTAAA--ATAAA---A---T--ACTGTTTG-T--TTCCCC-A-ATCT---TGACCCGA-C-----CC-GA--AAAAA---TT----GGT-GT--GA-CTG-A---AAGA-A-T-T-TC-ATTGCCAA-TATT--GT-GTGGA--A---TCT---T--T-TTT--------T---A----TCGAAATCCT-A--A--T-TGT--C---TCCT-ATG-AAA-GGAA-G-GAG--T-CAAAATAA-CGAA-GAAA-GG-ACC--ACTTTCCCTTC-AAAGTGCTT-TT----G--
gi|18 : GA--AAATGTTT-CGATGACTC-ACAGGG-GCTCATCACA-AAATATTGACCCTCTATATTCTGTATcta
gi|19 : TAAA--ATGAA---A---T--ATTGTTTG-T--TTCCCT-A-ATCT---CGACC-GA-C-----CC-GA--AAAAA---TT----TAC-GC--AA-CCG-G---AAGA-A-T-T-TT-Atnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcccccccccc
gi|2 : CTAAA--ATAAA-------T--ATTGTTTTCT--TTCCCC----TCC---CAACCCAA-C-----CC-GA--AAAAAATCTC----GCTTGC--GA-CTG-GG--AAGA-A-T-T-TTGATTGCCAA-TTTT--GTTGTGGA--AA--T-T---T--G-TTT--------T---A----TCGAAATCCTTA--A-GT-GGT-GC---TCCTAATG-AAA-GAGA-G-GAAA-T-C-AAAT-AACT-G-GAAA-G--ACT--GTTTT-CTTTC-AAAGCGCTT-TA----G--T-AA-TC--GCA-TAG-GTTGA--AAACATTT-CGA
gi|20 : GCCAAAA--ATAAA---T---A--ATTGTTTG-T--TTCCCC-A-AAAC---CG-CG-GA-C-----CC-gttgttcattttaataatctccataaggaaatgacacttttgattactccctagccttggtgtcctttatggtggtgttatttcctttttgcacaaccaacaaaacaacaatttaccccccctccccctcccccccccccaataaaaaaaaaaaattttacgttacctacctatccacacccaaagctgatagggtcaggtttgggacacaaaaattacttatttttttg
gi|22 : acccacacccaaacctgataTGACTC-ACAGGG-ACCGGTCACG-AAATATTAAATGTATATTTTATGTAT
gi|25 : caatC-ACAGGG-GCTCGTCACG-AAATATTGACCCTCCTTATTCTATGTt
gi|26 : GCCAAAA--ATAAAT--A---TTAATTGTTTG-T--TTCTGC-A-AACC---CGACC-gt
gi|3 : agAA--ATAAA---A---T----TGTTTG-T--TTTCC--A-ATCA---CGACC-GA-----------A--AAAAT---TT----GCT-GC--GA-CTG-G---AAGA-A-T-T-TT-TATGCCA---TTT--GT-GTGGA--A---T-T---T--T-TTT--------TTTAA----TCAAAAT-CT-A--A-GT-GGT-GC---TTC--ATG-AAA-GGAA-G-GAGTAT-C--AAT-A-CG-A-GAAATGG-AGC--ATATT-TCTTC-AAAGTGCTT-GT----G--T-AA-TCA-GCA-TAG-G-TG----AACATTT-CGAc
gi|4 : tCC-GA-C--------AA--AAAAA---AC----GC--GC--GATCCGTG---AAGA-AAT-TATTGATTGCCAA-TTTT--G--GTGGA--A---T-T---T--T-TTT--------TTTTA----TCGAAATCTT-A--ATGTTGGTTGC---TCC-AATG-AAA-GGGA-G-AAGG-T-C-AAAT-A-CT-A-GAAA-GG-ACCCTGCTTT-TCTTC-AAATTGCTTCTT----G--T-----CA-GCA-TAG-GTTGA--AAACGTTT-CAATGgttttaaaatttaatatatctgttcccataaagggacgaatgacactgatacacacactttgggtgtctcgttatgctggtgtattttcctttttacacatacccaaaaaaacataattcccccccccccccataaataaaataatcttacctcctattactctactcacacccaactgaaataagggtcggtttggggtaaacaaagaattatttatttttt
gi|5 : CTTAAA--ATAAA---A---T--ATTGTTTG-T--TTCCC--A-A-CT---CGAC--GA-C-----CCTGA--AAAAA---TC----GCT-GC--AA-CC--G---AAGA-A-T-T-TT-AAAAGCAA-ATTCAAGC-GT-GA--T---T-T---T--T-TTT--------T---A----TCGAAATCTT-A--A-GT-GGT-GC---TCC-AATGAAAA-GGGG-A-GAG--TCC-AAAT-A-CG-A-GAA---G-ACT--GCTTT-TCATCAAAAGCACTT-TT----GAAC-AA-TCATGTA-TAG-G-CCA--AAACCTTTGCGAttttatttaatatatctccataagggaaatgaaatcacgttgatacgccttacgacctggggttcctattatcactctggtagttatatttctcttagtctacacttacccaaactagacaaacatgatcacccccttccctcccaaatgaaaatcagtttactatctttctaccctaaccacatgaatagggtcgggatttgtggaaacataaa
gi|6 : C-A-ATCT---CGACC-AA-C-----AC-GA--AAAAA---TT----GGC-AC--GA-CCA-A---AAGA-A-T-T-TT-ATTGCCAA-TTTT--GT-GTGGA--A---T-T---TTAT-TTT--------T---A----TCTAAATCCT-A--A-TT-GGT-GC---TCC-GATG-AAA-GGGA-G-GAG--T-C-GAAT-A-CG-A-GAAA-GT-ACC--ACTTT-TCTTC-AAAGCACTT-TT----G--T-AA-C---GCA-TAATG-TG---AAACGTTT-CAATAACTCGACAGGGAGCTCAACACGAAAATACTGACCCTC--TATTCTGTATgtttatctgctaaacggaaatgaacacttgattcgccctatgagaccctttgatgttctatatatgctggtgtttatttcctttttacacataccaaaaaaataatttaagcccacctccaaatatgaaaatagtttacctacctacctaccacatccaaccgatagggtcgggtttgggaaacat
gi|6 : AAA--ATAAA---T---A--ATTGTTTG-T--TT--CC-A-AACC---CGACC-ttgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtccccccccccccaccccaaataaatatatttacctaccttacctacccacaccaactgaaagggtcgggtttggaaacaaacaattatttatttttg
gi|7 : caatctcgaccaacacgaaaaaattggcacgaccaaaagaattttattgccaattttgtgtggaattttatttttatctaaatcctaattggtgctccgatgaaagggaggagtcgaatacgagaaagtaccacttttcttcaaagcacttttgtaacgcataatgtgaaacgtttcaataactcgacagggagctcaacacgaaaatactgaccctctattctgtatttgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtccccccccccccaccccaaataaatatatttacctaccttacctacccacaccaactgaaagT-GTGGA--A---T-T---T--T-TTT--------TTT-A----TTGAAATCCT-A--A-TT-GGT-GC---TCCTA-TG-GAA-TGGA-G-GAG--T-C-AAAT-A-CG-A-GAAA-GG-ACC--ACTTT-TCTTC-AAAGCGCTT-TT----G--T-AA-TTG-GCA-TAG-G-TGA--AAACGTTT-CCATGACTC-ACATGG-GCTCATCACG-Atg
gi|7 : GCCAAAA--ATAAA---T---A--ATTGTTTG-T--TTCCCCAA-AACC---CGACC-gcatcatcaacgaaatattctgctatttgtaaatatagaatcagacggtgtcaaataacaattaaagacaagtagctctggacaatcttgtgtcctccccccctcccccccccaataaaatattttatcctaacctatacccaaccaactctgatagggtcgggttttggggaaacaaacaattatttatttttggc
gi|8 : tgtggaattttttttttattgaaatcctaattggtgctcctatggaatggaggagtcaaatacgagaaaggaccacttttcttcaaagcgcttttgtaattggcataggtgaaaacgtttccatgactcacatgggctcatcacgagcatcatcaacgaaatattctgctatttgtaaatatagaatcagacggtgtcaaataacaattaaagacaagtagctctggacaatcttgtgtcctccccccctcccccccccaataaaatattttatcctaacctatacccaaccaactctgatag-T---T--T-TTT--------T---A----TCGAAATCCC-A--A-GT-G-T-GC---TCCCAATG-AAA-GGCG-G-GAG--T-CCAAAT---CG-AAGAAA-GG-ACC--GCTTC-T-TTC-AAAGCGCTT-TT----G--T-AA-TCG-GCATTTG-G-TGA--AATTGTTT-CAAT
gi|9 : ATG-AAA-GGGA-G-AAG--T-C-AAAT-A-CG-A-GAAA-GG-ATC--GCTTT-TCTTC-AAAGTACTT-TT----G--T-AA-TCA-GCA-TAG-G-TG---AAACATTT-TGAttatttaaatatatttgccataaagggaaatgaaatttgatatggccctagaccttggtgtccctatatgctggtgttatttccttttaacacataccaacaaaaaacaatttacccctcaaaataaaaattttacctaccttctaccacacccaacctgatagggtcgggttttgggggaaacaaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Unaligned ( gi|23 ): ACCTGATAGCGTCGGAAGTTTGGGGGAACACAAACGTATTATTTATTTT
Unaligned ( gi|24 ): CTACCTACTCACACCCAACCTGATAGGGTCAGGTTGGGGAAACAAAC
Unaligned ( gi|27 ): CTGATAGGGTCGGGTTTGGGAAAACAAATA
Alignments
lowQualScore : 11111111111 11111111 11111111 111111 22222222222222222 1
lowQualScore : 0 33 66666666666 2 33 66 2 3 444 4 3 33333333 77 555 11111111 44 3 3 888 3 3 3 3 6 3 44 44 222222 2 555 33 2 11111111111111111 2 33 55 2 2 555 4 2 2 2 2 99 2 5 2 2 2 2 2 2 33 2 2 2 5555 66 2 2 2 2 2 5 777 2 5 5 5 1
lowQualScore : . .. ........... . .. .. . . ... . . ........ .. ... ........ .. . . ... . . . . . . .. .. ...... . ... .. . ................. . .. .. . . ... . . . . . .. . . . . . . . . .. . . . .... .. . . . . . . ... . . . . .
lowQualScore : 3 44 22222222222 5 44 99 4 1 111 4 1 77777777 99 888 77777777 66 3 3 555 1 1 1 1 2 3 66 88 555555 9 000 99 9 22222222222222222 9 99 44 9 9 000 1 7 7 7 7 66 9 7 9 9 9 9 9 9 99 9 9 7 7777 33 9 9 9 9 7 3 666 5 7 7 7 7
consensus : GCCTAAA--ATAAA---A---T--ATTGTTTG-T--TTCCCC-A-ATCC---CGACC-GA-C-----CC-GA--AAAAA---TC----GCC-GC--GA-CCG-G---AAGA-A-T-T-TT-ATTGCCAA-TTTT--GT-GTGGA--A---T-T---T--T-TTT--------T---A----TCGAAATCCT-A--A-GT-GGT-GC---TCCTAATG-AAA-GGGA-G-GAG--T-C-AAAT-A-CG-A-GAAA-GG-ACC--GCTTT-TCTTC-AAAGCGCTT-TT----G--T-AA-TCA-GCA-TAG-G-TGA--AAACGTTT-CGATGACTC-ACAGGG-GCTCGTCACG-AAATATTGACCCTCTATATTCTGTAT
Reference ( family-7134 ) : GCCTAAA--ATAAA---A---T--ATTGTTTG-T--TTCCCC-A-ATCC---CGACC-GA-C-----CC-GA--AAAAA---TC----GCC-GC--GA-CCG-G---AAGA-A-T-T-TT-ATTGCCAA-TTTT--GT-GTGGA--A---T-T---T--T-TTT--------T---A----TCGAAATCCT-A--A-GT-GGT-GC---TCCTAATG-AAA-GGGA-G-GAG--T-C-AAAT-A-CG-A-GAAA-GG-ACC--GCTTT-TCTTC-AAAGCGCTT-TT----G--T-AA-TCA-GCA-TAG-G-TGA--AAACGTTT-CGATGACTC-ACAGGG-GCTCGTCACG-AAATATTGACCCTCTATATTCTGTAT
gi|1 : CCTAAATAACAAATTTA---T--AT-GTTTG-TAATTCCCA-ACGTTCGTACGAAT-GA-CTTTCTCC-GAGTAGCAA---TTATGGGCCTGCTGAA-CTG-GGGTAAGATA-T-T-TT-ATTTCCAAGTTTT--AT-GTAGATAA---T-TATGT--TGTTT--------T---A----TCGAAATCCC-A--A-GT-GTT-GCAGCTGCCAATG-AAG-GGGA-G-GAG--T-C-AAAT-A-CG---GAAC-GG-ACC--GC-TT-TCTTC-AAAGCGCTT-TT----G--TAAA-TCG-GCA-TTG-T-TG---AAATGTTT-CAA
gi|10 : ---AATA-A-TGT-TT-A----CAA-TTTT--GA-ATGGA--A---T-T---T--T-TTT------------A----TC-ATATCCT-ATAA-GT-GGT-GC---TCC-AATG-AAA-AGGA-G-GAG--T-C-AAAT-A-CA-A-GAAA-GG-ACC--GCTTT-TCTTC-AAAGCACTT-TT----G--T-AA-TCA-GCA-TAG-G-TGA--AAACGTTT-CAAgtttatttaaatatatcttgcccattaacaagggaaatgggaactttgatatcctagaccttggtgtcctattatgctggtgttatttcccttttaacacataccaaacaaaacaatttaactccctcaaaaaataaagatattttactataccttcctacctcacatccgagagcaaatcttaatagagagtcggtatttgtgggaaaccat
gi|11 : GCCTAAA--ATAAA---A---T--ATTGTTTG-T--TTCTCC-A-ATCT---CGACC-AA-C-----CA-GA--AAAAG---TT----GGC-AC--GA-CCG-G---AAGA-A-T-T-TT-ATTGCCAA-TTTT--GT-GTGGA------T-T---T--T-TTT--------T---A----TCGAAATCCT-A--A-TT-GGT-GC---TCCTAATG-AAA-GGGA-G-GAG--T-C-AAAT-A-CG-A-GAAA-GG-ACC--GCTTT-TCTTC-AAAGCGCTT-TT----G--C-AA-TCA-GCA-TAG-A-TGA--AAATGTTT-CGATGACTC-ACAGGG-GCTCATCACA-AAATATTGACCCTCTATATTCTGTATgttttaattaatatatctgccataagggaaacacttaatacgccctagacctcgattttctattatgctggtgttatttcctttttacacataccaacaaaagacaatttactccccca
gi|12 : GCCTAAA--TTAAA---A---T---TTGTTTG-T--TTCCC--A-ATC-----AACC-AA-C-----T--GG--AAAAA---TC----ACT-GC--AA-CCG-G---AAGA-A-A-T-TT-ATTACCAA-TTTT--GT-GTGGA--A---T-T---T--T-TTTCTTTTCTCT--------TCGAAATCCT-A--A--T-GGT-GC---TT-TAATG-AAAAGGGA-TCGAG--T-C-AAAT-A--G-A-GAAA-GGCACC--ATTTT-TGTTC-AAAG-GCTT-TTTTATG--T-AA-TCA-GAA-TAG-G-TGG--AAA-GTTT-C
gi|13 : CCTAAA--TTAAA---A---T---TTGTTTG-T--TTCCCC-A-ATCC---CAACC-AA-C-----TG-GA--AAAAA---TC----ACT-GC--AA-CCG-G---AAGA-A-T-T-TT-ATTACCAA-TTTT--GT-GTGGA--A---T-T---T--T-TTT--------T---TCTCTTCGAAATCCT-A--A-GT-GGT-GC---T-TTAATG-AAA-GGGATC-GAG--T-C-AAAT-A-CG-A-GAAA-GG-ACC--ATTTT-TGTTC-AAAGCGCTT-TT----G--T-AA-TCA-GCA-TAG-G-TGA--AAACGTTT-CGAcgagtctatttaatatatctgccatacggaaacaatgaa
gi|14 : GCCAAAA--ATAAA---T---A--ATTGTTCG-T--TTCCCC-A-AACC---CTACC-gttctatttaatatatctgccataaggaaacaat
gi|15 : ggaaatgaacacttgatacgccctagaccttggtgtcctacatatgtattatgctggtgttatttcctttttacacataccaacaaaaaacaattcccccatcccaaaataaaatattttacctacctaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgcctacctacctacctgctagTAAA--ATAAA---AAAAT--ATTGTTTG-T--TTCCCTTA-ATCC---TGACC-GAAC-----CT-GAC-AAAAA---TC----ACT-GC--GA-CTG-G---AAGA-T-A-T-TT-ATTGCCAA-TTTT--G--GTGGAC-AACTT-T---T--T-TTT--------T---A----T-GAAATCCT-A--A-GT-GGT-GC---TCC-AATG-AAG-GGGG-A-GAc
gi|15 : CTT-TT----GG-T-AAATCA-GCA-TAG-G-TGAATAAATGTTT-CGAcccttttggtaaatcagcataggtgaataaatgtttcgagtttctatttaacatatctgccataagggaaatgaaacctt
gi|16 : taaaataaaaaaatattgtttgtttcccttaatcctgaccgaacctgacaaaaatcactgcgactggaagatatttattgccaattttggtggacaactttttttttatgaaatcctaagtggtgctccaatgaagggggagacc-G-TGA--AAACGTTT-CAATGACTC-ACAGGG-GCTCGTCACG-AAATATTGACTCTCTATTTTCTGTATgtttctatttaacatatctgccataagggaaatgaaacctt
gi|16 : aaatCCAAAA--ATAAA---T---A--ATTGTTTG-T--TTCCCC-A-AACC---CGACC-tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccaccccaaaaaaatttacctacctacctttaacacacacccaacctgatagggtcgggtttggggaaacaaacaattatttatttttgg
gi|17 : aaatgtgaaaacgtttcaatgactcacaggggctcgtcacgaaatattgactctctattttctgtattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccaccccaaaaaaatttacctacctacctttaacacacacccaacctgatagGCCTAAA--ATAAA---A---T--ACTGTTTG-T--TTCCCC-A-ATCT---TGACCCGA-C-----CC-GA--AAAAA---TT----GGT-GT--GA-CTG-A---AAGA-A-T-T-TC-ATTGCCAA-TATT--GT-GTGGA--A---TCT---T--T-TTT--------T---A----TCGAAATCCT-A--A--T-TGT--C---TCCT-ATG-AAA-GGAA-G-GAG--T-CAAAATAA-CGAA-GAAA-GG-ACC--ACTTTCCCTTC-AAAGTGCTT-TT----G--
gi|18 : GA--AAATGTTT-CGATGACTC-ACAGGG-GCTCATCACA-AAATATTGACCCTCTATATTCTGTATcta
gi|19 : TAAA--ATGAA---A---T--ATTGTTTG-T--TTCCCT-A-ATCT---CGACC-GA-C-----CC-GA--AAAAA---TT----TAC-GC--AA-CCG-G---AAGA-A-T-T-TT-Atnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcccccccccc
gi|2 : CTAAA--ATAAA-------T--ATTGTTTTCT--TTCCCC----TCC---CAACCCAA-C-----CC-GA--AAAAAATCTC----GCTTGC--GA-CTG-GG--AAGA-A-T-T-TTGATTGCCAA-TTTT--GTTGTGGA--AA--T-T---T--G-TTT--------T---A----TCGAAATCCTTA--A-GT-GGT-GC---TCCTAATG-AAA-GAGA-G-GAAA-T-C-AAAT-AACT-G-GAAA-G--ACT--GTTTT-CTTTC-AAAGCGCTT-TA----G--T-AA-TC--GCA-TAG-GTTGA--AAACATTT-CGA
gi|20 : GCCAAAA--ATAAA---T---A--ATTGTTTG-T--TTCCCC-A-AAAC---CG-CG-GA-C-----CC-gttgttcattttaataatctccataaggaaatgacacttttgattactccctagccttggtgtcctttatggtggtgttatttcctttttgcacaaccaacaaaacaacaatttaccccccctccccctcccccccccccaataaaaaaaaaaaattttacgttacctacctatccacacccaaagctgatagggtcaggtttgggacacaaaaattacttatttttttg
gi|22 : acccacacccaaacctgataTGACTC-ACAGGG-ACCGGTCACG-AAATATTAAATGTATATTTTATGTAT
gi|25 : caatC-ACAGGG-GCTCGTCACG-AAATATTGACCCTCCTTATTCTATGTt
gi|26 : GCCAAAA--ATAAAT--A---TTAATTGTTTG-T--TTCTGC-A-AACC---CGACC-gt
gi|3 : agAA--ATAAA---A---T----TGTTTG-T--TTTCC--A-ATCA---CGACC-GA-----------A--AAAAT---TT----GCT-GC--GA-CTG-G---AAGA-A-T-T-TT-TATGCCA---TTT--GT-GTGGA--A---T-T---T--T-TTT--------TTTAA----TCAAAAT-CT-A--A-GT-GGT-GC---TTC--ATG-AAA-GGAA-G-GAGTAT-C--AAT-A-CG-A-GAAATGG-AGC--ATATT-TCTTC-AAAGTGCTT-GT----G--T-AA-TCA-GCA-TAG-G-TG----AACATTT-CGAc
gi|4 : tCC-GA-C--------AA--AAAAA---AC----GC--GC--GATCCGTG---AAGA-AAT-TATTGATTGCCAA-TTTT--G--GTGGA--A---T-T---T--T-TTT--------TTTTA----TCGAAATCTT-A--ATGTTGGTTGC---TCC-AATG-AAA-GGGA-G-AAGG-T-C-AAAT-A-CT-A-GAAA-GG-ACCCTGCTTT-TCTTC-AAATTGCTTCTT----G--T-----CA-GCA-TAG-GTTGA--AAACGTTT-CAATGgttttaaaatttaatatatctgttcccataaagggacgaatgacactgatacacacactttgggtgtctcgttatgctggtgtattttcctttttacacatacccaaaaaaacataattcccccccccccccataaataaaataatcttacctcctattactctactcacacccaactgaaataagggtcggtttggggtaaacaaagaattatttatttttt
gi|5 : CTTAAA--ATAAA---A---T--ATTGTTTG-T--TTCCC--A-A-CT---CGAC--GA-C-----CCTGA--AAAAA---TC----GCT-GC--AA-CC--G---AAGA-A-T-T-TT-AAAAGCAA-ATTCAAGC-GT-GA--T---T-T---T--T-TTT--------T---A----TCGAAATCTT-A--A-GT-GGT-GC---TCC-AATGAAAA-GGGG-A-GAG--TCC-AAAT-A-CG-A-GAA---G-ACT--GCTTT-TCATCAAAAGCACTT-TT----GAAC-AA-TCATGTA-TAG-G-CCA--AAACCTTTGCGAttttatttaatatatctccataagggaaatgaaatcacgttgatacgccttacgacctggggttcctattatcactctggtagttatatttctcttagtctacacttacccaaactagacaaacatgatcacccccttccctcccaaatgaaaatcagtttactatctttctaccctaaccacatgaatagggtcgggatttgtggaaacataaa
gi|6 : C-A-ATCT---CGACC-AA-C-----AC-GA--AAAAA---TT----GGC-AC--GA-CCA-A---AAGA-A-T-T-TT-ATTGCCAA-TTTT--GT-GTGGA--A---T-T---TTAT-TTT--------T---A----TCTAAATCCT-A--A-TT-GGT-GC---TCC-GATG-AAA-GGGA-G-GAG--T-C-GAAT-A-CG-A-GAAA-GT-ACC--ACTTT-TCTTC-AAAGCACTT-TT----G--T-AA-C---GCA-TAATG-TG---AAACGTTT-CAATAACTCGACAGGGAGCTCAACACGAAAATACTGACCCTC--TATTCTGTATgtttatctgctaaacggaaatgaacacttgattcgccctatgagaccctttgatgttctatatatgctggtgtttatttcctttttacacataccaaaaaaataatttaagcccacctccaaatatgaaaatagtttacctacctacctaccacatccaaccgatagggtcgggtttgggaaacat
gi|6 : AAA--ATAAA---T---A--ATTGTTTG-T--TT--CC-A-AACC---CGACC-ttgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtccccccccccccaccccaaataaatatatttacctaccttacctacccacaccaactgaaagggtcgggtttggaaacaaacaattatttatttttg
gi|7 : caatctcgaccaacacgaaaaaattggcacgaccaaaagaattttattgccaattttgtgtggaattttatttttatctaaatcctaattggtgctccgatgaaagggaggagtcgaatacgagaaagtaccacttttcttcaaagcacttttgtaacgcataatgtgaaacgtttcaataactcgacagggagctcaacacgaaaatactgaccctctattctgtatttgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtccccccccccccaccccaaataaatatatttacctaccttacctacccacaccaactgaaagT-GTGGA--A---T-T---T--T-TTT--------TTT-A----TTGAAATCCT-A--A-TT-GGT-GC---TCCTA-TG-GAA-TGGA-G-GAG--T-C-AAAT-A-CG-A-GAAA-GG-ACC--ACTTT-TCTTC-AAAGCGCTT-TT----G--T-AA-TTG-GCA-TAG-G-TGA--AAACGTTT-CCATGACTC-ACATGG-GCTCATCACG-Atg
gi|7 : GCCAAAA--ATAAA---T---A--ATTGTTTG-T--TTCCCCAA-AACC---CGACC-gcatcatcaacgaaatattctgctatttgtaaatatagaatcagacggtgtcaaataacaattaaagacaagtagctctggacaatcttgtgtcctccccccctcccccccccaataaaatattttatcctaacctatacccaaccaactctgatagggtcgggttttggggaaacaaacaattatttatttttggc
gi|8 : tgtggaattttttttttattgaaatcctaattggtgctcctatggaatggaggagtcaaatacgagaaaggaccacttttcttcaaagcgcttttgtaattggcataggtgaaaacgtttccatgactcacatgggctcatcacgagcatcatcaacgaaatattctgctatttgtaaatatagaatcagacggtgtcaaataacaattaaagacaagtagctctggacaatcttgtgtcctccccccctcccccccccaataaaatattttatcctaacctatacccaaccaactctgatag-T---T--T-TTT--------T---A----TCGAAATCCC-A--A-GT-G-T-GC---TCCCAATG-AAA-GGCG-G-GAG--T-CCAAAT---CG-AAGAAA-GG-ACC--GCTTC-T-TTC-AAAGCGCTT-TT----G--T-AA-TCG-GCATTTG-G-TGA--AATTGTTT-CAAT
gi|9 : ATG-AAA-GGGA-G-AAG--T-C-AAAT-A-CG-A-GAAA-GG-ATC--GCTTT-TCTTC-AAAGTACTT-TT----G--T-AA-TCA-GCA-TAG-G-TG---AAACATTT-TGAttatttaaatatatttgccataaagggaaatgaaatttgatatggccctagaccttggtgtccctatatgctggtgttatttccttttaacacataccaacaaaaaacaatttacccctcaaaataaaaattttacctaccttctaccacacccaacctgatagggtcgggttttgggggaaacaaa
blockSeqs : . AAAATA C . TT . T . C A CCT C ATC GCTT . T T G . A G A G . AA TT CAACT C . TA . CTTTTCTCT T TA TG T T . T A A T C TA C A A A A A T C CT C A C TTAT AA . A T T T T AAT G G A A T
blockSeqs : . TATTAA . . CA . T . C . CA . . GGC . . . . . . . . G . . A AA . . . . TTCTCT . . G . . . T . . . . A . C . . . . . . . . . . . G . . . . . T A . . . . T
blockSeqs : . ATA . . C . T . . . TG . . ACT . . . . . . . . . . . T A . . . . TTTAA . . T . . . T . . . . G . . . . . . . . . . . . . . . . . . . . A . . . . T
blockSeqs : . TAA . . C . A . . . CT . . ACT . . . . . . . . . . . T A . . . . TTTTA . . G . . . T . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . C
blockSeqs : . TAA . . C . T . . . CC . . ACT . . . . . . . . . . . T A . . . . TTTA . . G . . . T . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . .
blockSeqs : . ATA . . C . A . . . CC . . GGT . . . . . . . . . . . T A . . . . TA . . G . . . T . . . . . . . . . . . . . . . . . . . . . . . . . A . . . .
blockSeqs : . ATA . . C . T . . . CC . . TAC . . . . . . . . . . . T A . . . . TA . . G . . . C . . . . . . . . . . . . . . . . . . . . . . . . . A .
blockSeqs : . TAA . . T . T . . . CC . . GCT . . . . . . . . . . . C A . . . . TA . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A .
blockSeqs : . ATA . . C . T . . . AC . . GCT . . . . . . . . . . . T T . . . . TA . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A .
blockSeqs : . TAA . . C . A . . . T . . GGC . . . . . . . . . . . T A . . . . TA . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A .
blockSeqs : . TAA . . C . A . . . . . . GC . . . . . . . . . . . . A . . . . TA . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A .
blockSeqs : . AT . . C . T . . . . . . . . . . . . . . . . TA . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A .
blockSeqs : . AT . . C . T . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . TA . . . . A . . . . . . . . . . . . .
blockSeqs : . AT . . . . A . . . .
blockSeqs : . . . . .
blockSeqs : .
blockSeqCons : ** NNA******** ** *** CC****** ** GCT***** ** *** A***** *** *** A**
originalCons : GCCTAAA--ATAAA---A---T--ATTGTTTG-T--TTCCCC-A-ATCC---CGACC-GA-C-----CC-GA--AAAAA---TC----GCC-GC--GA-CCG-G---AAGA-A-T-T-TT-ATTGCCAA-TTTT--GT-GTGGA--A---T-T---T--T-TTT--------T---A----TCGAAATCCT-A--A-GT-GGT-GC---TCCTAATG-AAA-GGGA-G-GAG--T-C-AAAT-A-CG-A-GAAA-GG-ACC--GCTTT-TCTTC-AAAGCGCTT-TT----G--T-AA-TCA-GCA-TAG-G-TGA--AAACGTTT-CGATGACTC-ACAGGG-GCTCGTCACG-AAATATTGACCCTCTATATTCTGTAT
finalCons : GCCTAAA--ATAAANNA--------TTGTTTG-T--TTCCCC-A-ATCC---CGACC-GA-CCC------GA--AAAAA---TCGCT-----GC--GA-CCG-G---AAGA-A-T-T-TT-ATTGCCAA-TTTT--GT-GTGGAA-----T-T---T--T-TTT--------T---A----TCGAAATCCT-A--A-GT-GGT-GC---TCCTAATG-AAA-GGGA-G-GAG--T-C-AAAT-A-CG-A-GAAA-GG-ACC--GCTTT-TCTTC-AAAGCGCTT-TT----G--T-AA-TCA-GCA-TAG-G-TGA--AAACGTTT-CGATGACTC-ACAGGG-GCTCGTCACG-AAATATTGACCCTCTATATTCTGTAT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Unaligned ( gi|23 ): ACCTGATAGCGTCGGAAGTTTGGGGGAACACAAACGTATTATTTATTTT
Unaligned ( gi|24 ): CTACCTACTCACACCCAACCTGATAGGGTCAGGTTGGGGAAACAAAC
Unaligned ( gi|27 ): CTGATAGGGTCGGGTTTGGGAAAACAAATA
Alignments
lowQualScore : 111111111 111111 22222222222222222 1
lowQualScore : 1 333333333 2 2 55 5 0 4 3 666 3 666 3 3 3 888 3 3 3 3 6 3 44 44 222222 2 555 33 2 11111111111111111 2 33 55 2 2 555 4 2 2 2 2 5 66 5 2 2 2 2 2 2 33 2 2 2 5555 66 2 2 2 2 2 5 777 2 5 5 5 1
lowQualScore : . ......... . . .. . . . . ... . ... . . . ... . . . . . . .. .. ...... . ... .. . ................. . .. .. . . ... . . . . . . .. . . . . . . . .. . . . .... .. . . . . . . ... . . . . .
lowQualScore : 0 666666666 5 5 44 9 6 4 1 000 6 444 3 3 3 555 1 1 1 1 2 3 66 88 555555 9 000 99 9 22222222222222222 9 99 44 9 9 000 1 7 7 7 7 7 88 7 9 9 9 9 9 9 99 9 9 7 7777 33 9 9 9 9 7 3 666 5 7 7 7 7
consensus : GCCTAAAATAAANN---A---TTGTTTG-TTT-CCCC-AATCCCGACC-GA-CCC-GA-AAAAA---TCGCC-GCGA-CCG-G---AAGA-A-T-T-TT-ATTGCCAA-TTTT--GT-GTGGA--A---T-T---T--T-TTT--------T---A----TCGAAATCCT-A--A-GT-GGT-GC---TCCTAATG-AAA-GGGA-G-GAG-T--C-AAAT-A-CG-A-GAAA-GG-ACC--GCTTT-TCTTC-AAAGCGCTT-TT----G--T-AA-TCA-GCA-TAG-G-TGA--AAACGTTT-CGATGACTC-ACAGGG-GCTCGTCACG-AAATATTGACCCTCTATATTCTGTAT
Reference ( family-7134 ) : GCCTAAAATAAANN---A---TTGTTTG-TTT-CCCC-AATCCCGACC-GA-CCC-GA-AAAAA---TCGCT-GCGA-CCG-G---AAGA-A-T-T-TT-ATTGCCAA-TTTT--GT-GTGGA--A---T-T---T--T-TTT--------T---A----TCGAAATCCT-A--A-GT-GGT-GC---TCCTAATG-AAA-GGGA-G-GAG-T--C-AAAT-A-CG-A-GAAA-GG-ACC--GCTTT-TCTTC-AAAGCGCTT-TT----G--T-AA-TCA-GCA-TAG-G-TGA--AAACGTTT-CGATGACTC-ACAGGG-GCTCGTCACG-AAATATTGACCCTCTATATTCTGTAT
gi|1 : GCT-G-AA-CTG-GGGTAAGATA-T-T-TT-ATTTCCAAGTTTT--AT-GTAGATAA---T-TATGT--TGTTT--------T---A----TCGAAATCCC-A--A-GT-GTT-GCAGCTGCCAATG-AAG-GGGA-G-GAG-T--C-AAAT-A-CG---GAAC-GG-ACC--GC-TT-TCTTC-AAAGCGCTT-TT----G--TAAA-TCG-GCA-TTG-T-TG---AAATGTTT-CAA
gi|10 : cctaaataacaaatttatatgtttgtaattcccaacgttcgtacgaatgactttctccgagtagcaattatgggcct---AATA-A-TGT-TT-A----CAA-TTTT--GA-ATGGA--A---T-T---T--T-TTT------------A----TC-ATATCCT-ATAA-GT-GGT-GC---TCC-AATG-AAA-AGGA-G-GAG-T--C-AAAT-A-CA-A-GAAA-GG-ACC--GCTTT-TCTTC-AAAGCACTT-TT----G--T-AA-TCA-GCA-TAG-G-TGA--AAACGTTT-CAAgtttatttaaatatatcttgcccattaacaagggaaatgggaactttgatatcctagaccttggtgtcctattatgctggtgttatttcccttttaacacataccaaacaaaacaatttaactccctcaaaaaataaagatattttactataccttcctacctcacatccgagagcaaatcttaatagagagtcggtatttgtgggaaaccat
gi|11 : GCCTAAAATAAAAT---A---TTGTTTG-TTT-CTCC-AATCTCGACC-AA-CCA-GA-AAAAG---TTGGC-ACGA-CCG-G---AAGA-A-T-T-TT-ATTGCCAA-TTTT--GT-GTGGA------T-T---T--T-TTT--------T---A----TCGAAATCCT-A--A-TT-GGT-GC---TCCTAATG-AAA-GGGA-G-GAG-T--C-AAAT-A-CG-A-GAAA-GG-ACC--GCTTT-TCTTC-AAAGCGCTT-TT----G--C-AA-TCA-GCA-TAG-A-TGA--AAATGTTT-CGATGACTC-ACAGGG-GCTCATCACA-AAATATTGACCCTCTATATTCTGTATgttttaattaatatatctgccataagggaaacacttaatacgccctagacctcgattttctattatgctggtgttatttcctttttacacataccaacaaaagacaatttactccccca
gi|12 : GCCTAAATTAAAAT-------TTGTTTG-TTT-CCC--AATC--AACC-AA-CT--GG-AAAAA---TCACT-GCAA-CCG-G---AAGA-A-A-T-TT-ATTACCAA-TTTT--GT-GTGGA--A---T-T---T--T-TTTCTTTTCTCT--------TCGAAATCCT-A--A--T-GGT-GC---TT-TAATG-AAAAGGGA-TCGAG-T--C-AAAT-A--G-A-GAAA-GGCACC--ATTTT-TGTTC-AAAG-GCTT-TTTTATG--T-AA-TCA-GAA-TAG-G-TGG--AAA-GTTT-C
gi|13 : CCTAAATTAAAAT-------TTGTTTG-TTT-CCCC-AATCCCAACC-AA-CTG-GA-AAAAA---TCACT-GCAA-CCG-G---AAGA-A-T-T-TT-ATTACCAA-TTTT--GT-GTGGA--A---T-T---T--T-TTT--------T---TCTCTTCGAAATCCT-A--A-GT-GGT-GC---T-TTAATG-AAA-GGGATC-GAG-T--C-AAAT-A-CG-A-GAAA-GG-ACC--ATTTT-TGTTC-AAAGCGCTT-TT----G--T-AA-TCA-GCA-TAG-G-TGA--AAACGTTT-CGAcgagtctatttaatatatctgccatacggaaacaatgaa
gi|14 : GCCAAAAATAAATA---A---TTGTTCG-TTT-CCCC-AAACCCTACC-gttctatttaatatatctgccataaggaaacaat
gi|15 : ggaaatgaacacttgatacgccctagaccttggtgtcctacatatgtattatgctggtgttatttcctttttacacataccaacaaaaaacaattcccccatcccaaaataaaatattttacctacctaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgcctacctacctacctgctagTAAAATAAAAA---AATATTGTTTG-TTT-CCCTTAATCCTGACC-GAACCT-GACAAAAA---TCACT-GCGA-CTG-G---AAGA-T-A-T-TT-ATTGCCAA-TTTT--G--GTGGAC-AACTT-T---T--T-TTT--------T---A----T-GAAATCCT-A--A-GT-GGT-GC---TCC-AATG-AAG-GGGG-A-GAc
gi|15 : CTT-TT----GG-T-AAATCA-GCA-TAG-G-TGAATAAATGTTT-CGAcccttttggtaaatcagcataggtgaataaatgtttcgagtttctatttaacatatctgccataagggaaatgaaacctt
gi|16 : taaaataaaaaaatattgtttgtttcccttaatcctgaccgaacctgacaaaaatcactgcgactggaagatatttattgccaattttggtggacaactttttttttatgaaatcctaagtggtgctccaatgaagggggagacc-G-TGA--AAACGTTT-CAATGACTC-ACAGGG-GCTCGTCACG-AAATATTGACTCTCTATTTTCTGTATgtttctatttaacatatctgccataagggaaatgaaacctt
gi|16 : aaatCCAAAAATAAATA---A---TTGTTTG-TTT-CCCC-AAACCCGACC-tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccaccccaaaaaaatttacctacctacctttaacacacacccaacctgatagggtcgggtttggggaaacaaacaattatttatttttgg
gi|17 : aaatgtgaaaacgtttcaatgactcacaggggctcgtcacgaaatattgactctctattttctgtattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccaccccaaaaaaatttacctacctacctttaacacacacccaacctgatagGCCTAAAATAAAAT---A---CTGTTTG-TTT-CCCC-AATCTTGACCCGA-CCC-GA-AAAAA---TTGGT-GTGA-CTG-A---AAGA-A-T-T-TC-ATTGCCAA-TATT--GT-GTGGA--A---TCT---T--T-TTT--------T---A----TCGAAATCCT-A--A--T-TGT--C---TCCT-ATG-AAA-GGAA-G-GAG-T--CAAAATAA-CGAA-GAAA-GG-ACC--ACTTTCCCTTC-AAAGTGCTT-TT----G--
gi|18 : GA--AAATGTTT-CGATGACTC-ACAGGG-GCTCATCACA-AAATATTGACCCTCTATATTCTGTATcta
gi|19 : TAAAATGAAAT---A---TTGTTTG-TTT-CCCT-AATCTCGACC-GA-CCC-GA-AAAAA---TTTAC-GCAA-CCG-G---AAGA-A-T-T-TT-Atnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcccccccccc
gi|2 : CTAAAATAAAT----A---TTGTTTTCTTT-CCCC---TCCCAACCCAA-CCC-GA-AAAAAATCTCGCTTGCGA-CTG-GG--AAGA-A-T-T-TTGATTGCCAA-TTTT--GTTGTGGA--AA--T-T---T--G-TTT--------T---A----TCGAAATCCTTA--A-GT-GGT-GC---TCCTAATG-AAA-GAGA-G-GAAAT--C-AAAT-AACT-G-GAAA-G--ACT--GTTTT-CTTTC-AAAGCGCTT-TA----G--T-AA-TC--GCA-TAG-GTTGA--AAACATTT-CGA
gi|20 : GCCAAAAATAAATA---A---TTGTTTG-TTT-CCCC-AAAACCG-CG-GA-CCC-gttgttcattttaataatctccataaggaaatgacacttttgattactccctagccttggtgtcctttatggtggtgttatttcctttttgcacaaccaacaaaacaacaatttaccccccctccccctcccccccccccaataaaaaaaaaaaattttacgttacctacctatccacacccaaagctgatagggtcaggtttgggacacaaaaattacttatttttttg
gi|22 : acccacacccaaacctgataTGACTC-ACAGGG-ACCGGTCACG-AAATATTAAATGTATATTTTATGTAT
gi|25 : caatC-ACAGGG-GCTCGTCACG-AAATATTGACCCTCCTTATTCTATGTt
gi|26 : GCCAAAAATAAATATTAA---TTGTTTG-TTT-CTGC-AAACCCGACC-gt
gi|3 : agAAATAAA-----A---TTGTTTG-TTT-TCC--AATCACGACC-GA------A-AAAAT---TTGCT-GCGA-CTG-G---AAGA-A-T-T-TT-TATGCCA---TTT--GT-GTGGA--A---T-T---T--T-TTT--------TTTAA----TCAAAATC-T-A--A-GT-GGT-GC---TTC--ATG-AAA-GGAA-G-GAG-TATC-AA-T-A-CG-A-GAAATGG-AGC--ATATT-TCTTC-AAAGTGCTT-GT----G--T-AA-TCA-GCA-TAG-G-TG----AACATTT-CGAc
gi|3 : tAAAATAAATA---A---TTCTTTG-TTTACCCC-AA-----ACC-GA-CCC-gttttaaaatttaatatatctgttcccataaagggacgaatgacactgatacacacactttgggtgtctcgttatgctggtgtattttcctttttacacatacccaaaaaaacataattcccccccccccccataaataaaataatcttacctcctattactctactcacacccaactgaaataagggtcggtttggggtaaacaaagaattatttatttttt
gi|4 : taaataaaattgtttgttttccaatcacgaccgaaaaaatttgctgcgactggaagaatttttatgccatttgtgtggaattttttttttaatcaaaatctaagtggtgcttcatgaaaggaaggagtatcaatacgagaaatggagcatatttcttcaaagtgcttgtgtaatcagcataggtgaacatttcgagttttaaaatttaatatatctgttcccataaagggacgaatgacactgatacacacactttgggtgtctcgttatgctggtgtattttcctttttacacatacccaaaaaaacataattcccccccccccccataaataaaataatcttacctcctattactctactcacacccaactgaaataaCC-GA-C---AA-AAAAA---ACGC--GCGATCCGTG---AAGA-AAT-TATTGATTGCCAA-TTTT--G--GTGGA--A---T-T---T--T-TTT--------TTTTA----TCGAAATCTT-A--ATGTTGGTTGC---TCC-AATG-AAA-GGGA-G-AAGGT--C-AAAT-A-CT-A-GAAA-GG-ACCCTGCTTT-TCTTC-AAATTGCTTCTT----G--T-----CA-GCA-TAG-GTTGA--AAACGTTT-CAATGtt
gi|5 : CTTAAAATAAAAT---A---TTGTTTG-TTT-CCC--AA-CTCGAC--GA-CCCTGA-AAAAA---TCGCT-GCAA-CC--G---AAGA-A-T-T-TT-AAAAGCAA-ATTCAAGC-GT-GA--T---T-T---T--T-TTT--------T---A----TCGAAATCTT-A--A-GT-GGT-GC---TCC-AATGAAAA-GGGG-A-GAG-TC-C-AAAT-A-CG-A-GAA---G-ACT--GCTTT-TCATCAAAAGCACTT-TT----GAAC-AA-TCATGTA-TAG-G-CCA--AAACCTTTGCGAttttatttaatatatctccataagggaaatgaaatcacgttgatacgccttacgacctggggttcctattatcactctggtagttatatttctcttagtctacacttacccaaactagacaaacatgatcacccccttccctcccaaatgaaaatcagtttactatctttctaccctaaccacatgaatagggtcgggatttgtggaaacataaa
gi|6 : C-AATCTCGACC-AA-CAC-GA-AAAAA---TTGGC-ACGA-CCA-A---AAGA-A-T-T-TT-ATTGCCAA-TTTT--GT-GTGGA--A---T-T---TTAT-TTT--------T---A----TCTAAATCCT-A--A-TT-GGT-GC---TCC-GATG-AAA-GGGA-G-GAG-T--C-GAAT-A-CG-A-GAAA-GT-ACC--ACTTT-TCTTC-AAAGCACTT-TT----G--T-AA-C---GCA-TAATG-TG---AAACGTTT-CAATAACTCGACAGGGAGCTCAACACGAAAATACTGACCCTC--TATTCTGTATgtttatctgctaaacggaaatgaacacttgattcgccctatgagaccctttgatgttctatatatgctggtgtttatttcctttttacacataccaaaaaaataatttaagcccacctccaaatatgaaaatagtttacctacctacctaccacatccaaccgatagggtcgggtttgggaaacat
gi|6 : AAAATAAATA---A---TTGTTTG-TTT---CC-AAACCCGACC-ttgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtccccccccccccaccccaaataaatatatttacctaccttacctacccacaccaactgaaagggtcgggtttggaaacaaacaattatttatttttg
gi|7 : caatctcgaccaacacgaaaaaattggcacgaccaaaagaattttattgccaattttgtgtggaattttatttttatctaaatcctaattggtgctccgatgaaagggaggagtcgaatacgagaaagtaccacttttcttcaaagcacttttgtaacgcataatgtgaaacgtttcaataactcgacagggagctcaacacgaaaatactgaccctctattctgtatttgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtccccccccccccaccccaaataaatatatttacctaccttacctacccacaccaactgaaagT-GTGGA--A---T-T---T--T-TTT--------TTT-A----TTGAAATCCT-A--A-TT-GGT-GC---TCCTA-TG-GAA-TGGA-G-GAG-T--C-AAAT-A-CG-A-GAAA-GG-ACC--ACTTT-TCTTC-AAAGCGCTT-TT----G--T-AA-TTG-GCA-TAG-G-TGA--AAACGTTT-CCATGACTC-ACATGG-GCTCATCACG-Atg
gi|7 : GCCAAAAATAAATA---A---TTGTTTG-TTT-CCCCAAAACCCGACC-gcatcatcaacgaaatattctgctatttgtaaatatagaatcagacggtgtcaaataacaattaaagacaagtagctctggacaatcttgtgtcctccccccctcccccccccaataaaatattttatcctaacctatacccaaccaactctgatagggtcgggttttggggaaacaaacaattatttatttttggc
gi|8 : tgtggaattttttttttattgaaatcctaattggtgctcctatggaatggaggagtcaaatacgagaaaggaccacttttcttcaaagcgcttttgtaattggcataggtgaaaacgtttccatgactcacatgggctcatcacgagcatcatcaacgaaatattctgctatttgtaaatatagaatcagacggtgtcaaataacaattaaagacaagtagctctggacaatcttgtgtcctccccccctcccccccccaataaaatattttatcctaacctatacccaaccaactctgatag-T---T--T-TTT--------T---A----TCGAAATCCC-A--A-GT-G-T-GC---TCCCAATG-AAA-GGCG-G-GAG-T--CCAAAT---CG-AAGAAA-GG-ACC--GCTTC-T-TTC-AAAGCGCTT-TT----G--T-AA-TCG-GCATTTG-G-TGA--AATTGTTT-CAAT
gi|9 : ATG-AAA-GGGA-G-AAG-T--C-AAAT-A-CG-A-GAAA-GG-ATC--GCTTT-TCTTC-AAAGTACTT-TT----G--T-AA-TCA-GCA-TAG-G-TG---AAACATTT-TGAttatttaaatatatttgccataaagggaaatgaaatttgatatggccctagaccttggtgtccctatatgctggtgttatttccttttaacacataccaacaaaaaacaatttacccctcaaaataaaaattttacctaccttctaccacacccaacctgatagggtcgggttttgggggaaacaaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Unaligned ( gi|23 ): ACCTGATAGCGTCGGAAGTTTGGGGGAACACAAACGTATTATTTATTTT
Unaligned ( gi|24 ): CTACCTACTCACACCCAACCTGATAGGGTCAGGTTGGGGAAACAAAC
Unaligned ( gi|27 ): CTGATAGGGTCGGGTTTGGGAAAACAAATA