lowQualScore : 1111111111111111111111 1111111111111111111111111111111111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111
lowQualScore : 4 1 5555555555555555555555 5555555 2 1 1 8888888888888888888888888888888888 1 222 333 1 11 7777777777777777777777 11 33333333333333333333 11 1 2 4 1 22 1 22 33333333333 000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 11 2222 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 22222 1111 3333333333 11111 1111 333333 222222222222222222222222222222222222222222222222 2222 222 3333 1111 1
lowQualScore : 0 6 5 9999999999999999999999 1111111 3 6 5 0 6 5555555555555555555555555555555555 66 3 777 222 6 6 3 33 4444444444444444444444 99 99999999999999999999 00 0 88 3 0 7 6 77 4 4 5 66 6 2 88888888888 2 2 333333333333333333333333333333333333333333333333333333333333333333333333333333333333 5 1 8 99 5 3 5555 7 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 77 0 66 5 5 55555 4444 66 5 1 2 7 99 3 77 7 3333333333 3 7 00000 0 4444 5 5 5 4 222222 1 0 66 000000000000000000000000000000000000000000000000 1 88 3333 555 6 6666 9999 1
lowQualScore : . . . ...................... ....... . . . . . .................................. .. . ... ... . . . .. ...................... .. .................... .. . .. . . . . .. . . . .. . . ........... . . .................................................................................... . . . .. . . .... . ........................................................................................................... .. . .. . . ..... .... .. . . . . .. . .. . .......... . . ..... . .... . . . . ...... . . .. ................................................ . .. .... ... . .... .... .
lowQualScore : 0 0 0 0000000000000000000000 0000000 0 0 0 5 0 0000000000000000000000000000000000 77 3 777 777 7 0 3 00 8888888888888888888888 55 55555555555555555555 00 5 55 0 0 0 0 55 0 0 0 55 0 5 00000000000 5 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 4 6 88 2 7 8888 5 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 99 7 99 7 7 55555 2222 00 0 0 5 5 22 7 33 5 5555555555 0 6 11111 7 2222 7 7 7 6 333333 0 2 99 222222222222222222222222222222222222222222222222 1 00 4444 111 0 5555 3333 8
consensus : NATCTTTATTGGGGAAAGCTTGCGGTTCAATAACA-----TG-ACAACAAATTNGAGTAAGGTTGTTTGCATGCATGTACNTAACATGCATG-------ATAT-ACAGAGAAAA-GTAA-GA----ATCCATGAATTTCAT-TTTG-AAAAGTA-TTTTAGACAAGT-GCGGCCTCTCAAACATTTGGT-TGAGCATAGAACACGNAGTTTTNACGCNACGTGGANTTTAAAGNCAANTGTNAATCAAAGGCTACGAGATCGGTT-TTACAAANNNNNNNNNNNNNNTATATAAGTTGTANACGGANTTTGAATGTGATNAATATTCGACATTTGACTANAGGCAANTTACGAGAAAAGANCTATGATAA-ATGCAGAACTACAAGACACCGCCNTCNCCTCNAAGTAGGCAGGTGGAGTTGA--T-G----------AAAGGAATGAACGCTTTTGTACGTTA-TGCAACTGTAANCAAATTGGAG---ATGAAT---------TTCATTA-ATT-TTGAATGTAAAGCATTGTGT-A-AATTGCGT-CA--T-----T---AGAGATTTTTT---AANTAN--AGAA------TAC-----TGTT--CTGCCCCAAACACC--A-AA-ANAA-TTTGT----GAACTCATGTCTTCCAAAGATCCTGT--ATNT-TTAAGAAAG--T---GT--GTGTNTTTNT-T---TTGA----AAAATCAAC-A-AT-ACTGTCTGT--T-TCCTGACTCTTCGTCTGTT--TGACCC---------CTG-T-A--TT---TA------------------TGTAAATATN-TT-TCATGTACCT-CATGTACCAT-T-CCATGG-TTTGAGTGTAATAAACT
Reference ( gi|1 ) : TATCTT-ATCGGGCAAAGCTTA----TCAACAGCAATCATTGGATAACAAACTTG-GCAAGGTTATTTATATCTATGTACGTAACATACATGTACATAGATATGACAAAGAAAAAGTAACAATTAAATCCATAGATTTCAT-TTCGGAAAAGTA-TGTTAGACAGGT-GTGAACTCTGGAACATTTGGTATGAGCATGAAACACGCTGTTATAATGCTATGTGGATT---AAGTTAACTGCGAACCAAAGGCTATAAGATCAATTATTACAAATTATAAAAAAAAAATAAATAAATT--AAACAAATTTTGACTGTGAGAAATACTTGACATT--AC-AAAGA-AAGTTACGAG---AAATCTTTATTAAGATATAGAACTACAA------ACTTTGACTTCC-------C---T---G-TGA---------------AAACGAATGAACGCTTTTGTATGTTT-TGTAACTGTAACCAAATTGGAA---ACGAAT---------TTC---------TGGAATGTAAAGCATTGAGC-A-AATTACATACATGTACCGGT---AGGTGTTTTTTTTAAAATAC--AAAG------TAG-----TGTT--CTGCCCCAAACACC--A-AA-AGAATTTTGT----GAATTCATGTCTTCTAAAGATTCCGT--ATCT-CTAAAAAAA--T---AT--GTATGTTTAT-T---TTGA----AAAATCAAT-A-AT-ATTGTCTGT--T---CTGATTTTTCGTCTGTT--T--------------CTG-T-A--TT---TA------------------TGTAAATATT-TT-CCATGTACCTCCACGTACCA--C-CCATGG-CCCGAGTGAAATAAACT
gi|2 : ATCTTTATTGGGGAAAGCTTGCGGTTCAATAACA-----TG-ACAACAAATTGA-ATAAGGTTGTTTACATGTATGTATTTAACATGCATG-------ATAT-----AGGAAAAGTAAGAA----ATCCATGAATTTCATGTTTG--AAAGTA-T-TTAGACAAGTGGTGGCCTCTCAAACAT---GT----------AACACGCAGTT-TTATGCAACGT--ATTTTAAAGTCAAGTGTTAA-CAAAGGCTATGAGATCAATT-TTACAAA
gi|4 : agatatcctttgtatatgacaatttttacagaatgTAACAAA--TGAGTAAGGTT-TTTGCATACATGTACATAACATGCATG------------ACAAAGAGA--GCAACGA----ATCCATGGATTTCAG-TTTTGAAAAGTA-CTTTAGACAAGT-ACGGATTGTCAAACATTTGGTAaatgacaggaggatatatctacggcttcaaagggtgtaatttacagaatgttcaacaaacagaatttgaatgtgattaatattccacattattacaagaagttacgaaagatttgaactacaaaccatcaccttactgttgaattaggcagatgaataaaaggatgaacgcttttgtatattatgcaactgtaaccaaattggagtatgaatttcattatattcttgaatgtaaagcatagtgcaaaattacgtcagattttaactaaagaatactgctattcccaaacactaaatagtttgtgatcttatgccttctaaaattctgtatctctaagaaagctgcgcatgcttattttgaaaatccaataatactgtctgttat
gi|3 : atggtctgcggtaaaacgggaagaaatcctttgtatataacaagttttacaagaatgatctcttattggcaaagttATATGACAGGGAAAA--TAA----TAGAGTGATGACTTTCAT-TTTG-AAAAGTAGTTTTA-ATAAAT-GTGGCCTCT----C-TTTGAATTGAGCATAGAACACGGAATTTTAACTCTAAATGGAAT---AAAACAATTGTGAATCAAAGACTACAAGATCGGTT-TTACAAAccagnnnnnnnnnnnnnnnnnnnnnnnagaagagcaacgaatccatggatttcagtttatttttatttttttttacaaaaaaggcacgaagatatatcta
gi|6 : atgcttcacagtgaaacttgatgatatcctttaaatgtaacaattttttactagaaggtctcttattgggcacaacgtgtcaacggcaatgataactaacttagcaaattTATATAAGTTGTATACGAATTTTGAATGTGATGAATATTTGACATTTGAC-AAAGACAATTTAAAAGAAAAAAACTATGATAA-ATGCA-AACTACAAGACACCGCTTTCTCTTCCAAGTAGGCAGGTGGAG-TGACATTG----------AAGGAAATGAAAGCGATTATAGATTA-TGTATTTGGAAGCAGATTGAAGATCATGAAT---------TTaatggcgtgatggtattgctaattatgacttaatttagaaccactaatcaccatcttccagatctagtaggcagatggaataacacggaaaggaataaacacttctgtatgttatgcaaccgtaatcaagttggagatgaatgttattattttcttg
gi|2 : atttctcaaaagtggctcgataatatttctgagttatcaagggtagtggct--AAACAGAATTTGAATGTGATTAATATTCCACATT--ATTACAAG-AAGTTACGAA---AGATTT-------------GAACTACAA------ACCATCACCTTA-------C---T---GTTGAATTAGGCAGATGAATAAAAGGATGAACGCTTTTGTATATTA-TGCAACTGTAACCAAATTGGAGT--ATGAATTTCATTATATTC---------TTGAATGTAAAGCATAGTGCAA-AATTACGT-CA----------------GATTTT----AACTAA--AGAA------TAC-----TGCT--AT-TCCCAAACACT--A-AATAG---TTTGT----GATCTTATGCCTTCTAAA-ATTCTGT--ATCT-CTAAGAAAGC-T---GC--GCATGCTTAT-T---TTGA----AAATCCAAT-A-AT-ACTGTCTGT--T---tatagtattc
gi|3 : agatatcctttgtatatgacaatttttacagaatgatctttattggggaaagcttgcggttcaataacatgacaacaaattgaataaggttgtttacatgtatgtatttaacatgcatgatataggaaaagtaagaaatccatgaatttcatgtttgaaagtatttagacaagtggtggcctctcaaacatgtaacacgcagttttatgcaacgtattttaaagtcaagtgttaacaaaggctatgagatcaattttacaaaaatgacaggaggatatatctacggcttcaaagggtgtaatttacagaatgttcaacGG---------------AAAGGAATAAACACTTCTGTATGTTA-TGCAACCGTAATCAAGTTGGAG---ATGAAT---------at
gi|9 : atgcttcacagtgaaacttgatgatatcctttaaatgtaacaattttttactagaaggtctcttattgggcacaacgtgtcaacggcaatgataactaacttagcaaattatatgacagggaaaataatagagtgatgactttcattttgaaaagtagttttaataaatgtggcctctctttgaattgagcatagaacacggaattttaactctaaatggaataaaacaattgtgaatcaaagactacaagatcggttttacaaaaatggcgtgatggtattgctaattatgacttaatttagaaccactaatcaccatcttccagatctagtaggcagatggaataacac---------------AAAAGAAAGAACGTTATTGTA-GTTTATGAAATTGTAATCATATTGGAC---AAGAAT---------TTCATTAAATTTCAGAATGTATAGCATTGTGT-AGAATTgttattattttcttg
gi|10 : agtttcaatatgtttaatgatgatcaccacatgggaggatatttaacatagttaccaagtaaatttaactagaaaccaccaccttcctctcgaattaggcagatagagcaatatacAATAAACGCTTCTGTACGTTA-TGCCACTGTAACCAAATTGGTG---ATGAATTTCATTTTATTC---------TTGAATGTAAAG----GAAA-G-GATAACAAACAGCGATCAGTCTCAG--ACTTTGTGTAAATTGCGTAGAGATTGTTTAGAATATTGTT--CTGCTCCAAACACC--A-AA-tttaaattaaga
gi|14 : agaAAACAAATGGGAG---ATGAAT---------TTCATTATATTCTTGAATGTAAGACATAGGGT-A-AA--------ATGCA----T---AGAGATTTTTT---AGATGT--AGAA------TAT-----TGTT--CTGCTCCAAACACC--taatancagtctcagactttgtg
gi|8 : tttgcactgaaag---------TTC---------TTCAATGTAAAACAATGTAC-A-AATTGC-------T-----T---AGAGATTTTT----AGCTAT--AGAA------TAC-----TGTT--CTGCCCCAAACATCAAA-AA-AGAATTTTTTTTGAGAACTCATGTCGTTCAAAGATCCAGT--ATTT-TCAGGAAAA--T----T--GTGTCTTTTTGT---TTG-----AAAATCAAC-A-AT-ACTGTCTGT--TTTCCTAACCCTTTGCC------T--------------CTG-T-A--AT---T-------------------TGTAATTA
gi|7 : tgagagattaatttcattataAAAGTAAGACATTGTGT-A-AATTGCCT-----T-----T---AGAT-TTTTTTTTAGA-TAT--AGAA------TAT-----TGTT--CTGCTCCAAACACC--A-AA-AAAA-TGTGT----GAACTCATGTCTTCCAAAGATCTTGT--A-GT-TTAAGAAAG--T----T--GTGTCTTTTT-G---TTGa
gi|5 : ttatctttccactgaattaagaaatacaaaatgccttcttttcattatgtaatagtcggtgataatttagactatcaagatgatttcgttctgagcttaagtctATTGCATACA-GT-CCG-T---AGAGATTTTTT---ACATAC--AGAA------TAT-----TATT--CTGTCCCAAACACC--A-AA-ACAG-TTTGT----GAATTCATGTCTTCCAAAGATCCTGTAGATTT-TT---AAGA--T---ATTGGTGCCTTT-T-T---TTGAATTGAAAATCAGC-A-AC-AGTATCTGT--TCTCCTAACTCTTTGTTTGTT--TGACCC---------CTG-TAA--TT---TGTAATTAGCAATGTATATTTGTAAATACG-TT-TCATATACCT-CATGTGCCAT-T-CCATGG-TTTGAGTGTAATAAACT
gi|12 : acTAA--AGAA------TAC-----TGTTATTTCCCCCAAACACT--A-AA-ATAG--TTGT----GA--TCTTATCT------G----TGT--ATCTGCTAAGAAAAGCT---GT--GTATGTTTAT-T---TTGA----AAAATCAATGA-AT-AATGCCTGTTCT---CTGATGTTTTATTTGTTGAT--------------C--------CT---TG------------------T-TAAATCTTCTT-ATATGTAgaa
gi|11 : CCAAACACT--GTAA-AAAAT---AT----GAATTTA-GTCCTCCATAAATTCTGT--ATAA-TTAAGAAAG--TCACAT--GTATGTTTGT-TCATTTCA----AAAACAAAT-A-ATTGCTGTCTGT--T----TGCCTTTTC-TCTGTT--T----------------GAC-A--CT---TA---------------------AAATATG-TAACTATATAC----ATGTACCA--CTCCACTG-TCTCAGTG
gi|15 : ATATTTAT-T---TT-A----AAAATTAAT-GTAT-GTTCTC---------CTGATTTATCGTCTGTT--TCATGACCCCTGTTACTG-T-A--TG---TA------------------TGTAAATATT-TT--CATGTGCC
gi|13 : tgATCAAC-A-GT-ATTGTCTGT--TCTCCTAACGCTTTGTCTGTT--TGACCC---------CTG-T-A--AT---T-------------------TGTAATTATG-T----AAATACGTTCATGTACCAT-T-CCATGG-TTTGAGTGTACTAAattc
gi|17 : ttgaactggacaaaacaagtTTTTCATCTGTT--TGACCC---------CTG-------T---TAC-----------------CGT--ATATT-T-----TGTACCT-CATGTACCAT-T-CCATGATTTCGAGTGAtatgaactgaactgttctcct
gi|16 : GTCTGTT--TGACCC---------CTG-T-AATTTGCATA------------------TGTAAATATG-TT-TCATGTACCT-CATGTACCATTC-CC-TGG-TTTGATTGTAATAAACT
gi|18 : tTG-T-A--TA---TA------------------TTGAAATACT-TT-TCATGTA---CCAT--------T-CCATGG-TTTGAGTGTAATAAACTgaa
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): GTATATACGTTTCGCACACTAATACCCATGTACCATTCTATGATTTGAGTGAAATAAA
Unaligned ( gi|20 ): GTGAATAAGTTTCATGTACAGCATGTACCATTCTATATATGGTTTGAGTGTAATAA
Unaligned ( gi|21 ): AAAAAGTTGTTTCTTTTTATTATGAAAATCAACAATATTGTCTGTTATCCAAG
Alignments
lowQualScore : 1 2222 55555555 22 1 4444444444444444 44444 111 1 1 11 33333333 222222 111 111 1 777777777777777 22222 33333 1 55555555555555 1 3333 44444444444 11 3333333333333 11 333333333333 8888888888888888 111 44444444444444 111 66666666666666 1111 3333333333333333333333 11 1111111 2222222 1111 1 666666666666666666666666666666666666 22222222
lowQualScore : 5 2 3333 11111111 66 7 2 0 44 1 33 1111111111111111 88 77777 8 111 0 3 0 3 2 22 2 99999999 000000 555 222 1 3 1 2 777777777777777 11 1 99999 6 44 33333 3 7 44444444444444 4 3 4444 1 11 1 1 0 22222222222 1 6 11 1 2222222222222 2 55 1 444444444444 4 3 1111111111111111 6 1 222 66 11111111111111 66 0 2 333 5 66666666666666 2222 44 2222222222222222222222 1 66 00 1 6666666 888 22 1 3 5 77 1 5 3333333 1 1 5 4 777 0000 77 4 3 4 7 0 777 222222222222222222222222222222222222 4 555 0 00000000 9999 4
lowQualScore : . . .... ........ .. . . . .. . .. ................ .. ..... . ... . . . . . .. . ........ ...... ... ... . . . . ............... .. . ..... . .. ..... . . .............. . . .... . .. . . . ........... . . .. . ............. . .. . ............ . . ................ . . ... .. .............. .. . . ... . .............. .... .. ...................... . .. .. . ....... ... .. . . . .. . . ....... . . . . ... .... .. . . . . . ... .................................... . ... . ........ .... .
lowQualScore : 5 5 0000 00000000 00 3 0 7 33 0 55 5555555555555555 88 00000 0 888 0 2 0 2 5 00 5 55555555 333333 000 777 0 7 0 0 777777777777777 77 0 33333 7 33 33333 3 3 55555555555555 7 3 3333 0 33 0 0 7 77777777777 0 7 00 0 8888888888888 5 44 0 888888888888 6 2 4444444444444444 3 0 222 11 66666666666666 99 8 1 888 0 00000000000000 1111 66 8888888888888888888888 1 99 11 0 2222222 666 11 4 0 7 99 0 7 1111111 1 0 3 4 888 6666 11 4 7 4 8 4 888 888888888888888888888888888888888888 5 555 4 77777777 4444 4
consensus : NATCTTTATCGGGNAAAGCTTGCGGTTCAACAGCAATCATTGGACAACAAATT-GAGTAAGGTTGTTTACATNTATGTACNTAACATGCATG-------ATATGACAAAGAAAA-GTAACA---GAA-TCCATGGATTTCA-T-TTTG-AAAAGTA-TTTTAGACAAGTG-TGGNCTCTCG-------AACATTCGG-T-T--GAGCATGGAACACGNAGTTTTAACGCTAAGTG--------GANT---AAATCAATTGCG----AATCAAAGGCTANAAGAT-----CGGTT-TTACAAANNGTGNAANNAAAATANATAA-GTT--GCAAACGAATTTTGAATGTGATNAATATTCGACATT--AC-AAAGA-AAGTTACGAGAAAAGANCTATGA-TAA-ATNTAGAACTACAAANCACCGCCTTCC---TCTCGAANTAGGCAGATGGAG-TGA---T---G---AAAGGAATGAACGCTTTTGTACGTTATGCAACTGTAACCAAATTGGAG---ATGAATTTCA--TT--------ATATTCTT--GAATGTAAAGCATTGNGT---A-AATTGCGT---T-------TAG----AGATTTTTT---AGATA-------------TAGAATACTGTT--CTGCCCCAAACACCA-AAANAG-------TTT-GTGAACTCATGTCTTCCAAAGATCC-TGT--ATCT-CTAAGAAAG--T---GTGTGTNTTTAT-T---TTGA----AAAATCAAC-AAT-ACTGTCTG-TT-TCCTGACTTTTCGTCTGTTT---GACCCCTGT------A--TT---TA------------------T-GTAAATATGTTT-C-ATGTAC-----CT-CATGTACCATTC----CATGGTTT-GAGTGTAATAAACT
Reference ( family-705 ) : NATCTTTATTGGGGAAAGCTTGCGGTTCAATAACA-----TG-ACAACAAATTNGAGTAAGGTTGTTTGCATGCATGTACNTAACATGCATG-------ATAT-ACAGAGAAAA-GTAA-----GAA-TCCATGAATTTCA-T-TTTG-AAAAGTA-TTTTAGACAAGTG-CGGCCTCTCA-------AACATTTGG-T-T--GAGCATAGAACACGNAGTTTTNACGCNACGTG--------GANTTTAAAGNCAANTGTN----AATCAAAGGCTACGAGAT-----CGGTT-TTACAAANNNNNNNNNNNNNNTATATAA-GTT--GTANACGGANTTTGAATGTGATNAATATTCGACATTTGACTANAGGCAANTTACGAGAAAAGANCTATGA-TAA-ATGCAGAACTACAAGACACCGCCNTCN---CCTCNAAGTAGGCAGGTGGAGTTGA---T---G---AAAGGAATGAACGCTTTTGTACGTTATGCAACTGTAANCAAATTGGAG---ATGAATTTCA--TT--------A-ATT-TT--GAATGTAAAGCATTGTGT---A-AATTGCGT-CAT-------TAG----AGATTTTTT---AANTA-------------NAGAATACTGTT--CTGCCCCAAACACCA-AAANAA-------TTT-GTGAACTCATGTCTTCCAAAGATCC-TGT--ATNT-TTAAGAAAG--T---GTGTGTNTTTNT-T---TTGA----AAAATCAAC-AAT-ACTGTCTG-TT-TCCTGACTCTTCGTCTGTTT---GACCCCTGT------A--TT---TA------------------T-GTAAATATNTTT-C-ATGTAC-----CT-CATGTACCATTC----CATGGTTT-GAGTGTAATAAACT
gi|1 : ATCTT-ATCGGGCAAAGCTTA----TCAACAGCAATCATTGGATAACAAACTTG-GCAAGGTTATTTATATCTATGTACGTAACATACATGTACATAGATATGACAAAGAAAAAGTAACAATTAAA-TCCATAGATTTCA-T-TTCGGAAAAGTA-TGTTAGACAGGTG-TGAACTCTGG-------AACATTTGG-TAT--GAGCATGAAACACGCTGTTATAATGCTATGTG--------GATT---AAGTTAACTGCG----AACCAAAGGCTATAAGAT-----CAATTATTACAAATTATAAAAAAAAAATAAATAA-ATT----AAACAAATTTTGACTGTGAGAAATACTTGACATT--AC-AAAGA-AAGTTACGAGAAA---TCTTTAT-TAAGATATAGAACTACAA-ACTTTGACTTCC---C---------------TG----TGA-----------AAACGAATGAACGCTTTTGTATGTTTTGTAACTGTAACCAAATTGGAA---ACGAATTTC-------------------TG--GAATGTAAAGCATTGAGC---A-AATTACATACATGTACCGGTAG----GTGTTTTTTTTAAAATA-------------CAAAGTAGTGTT--CTGCCCCAAACACCA-AAAGAA-------TTTTGTGAATTCATGTCTTCTAAAGATTC-CGT--ATCT-CTAAAAAAA--T---ATGTATGTTTAT-T---TTGA----AAAATCAAT-AAT-ATTGTCTG-TT---CTGATTTTTCGTCTGTTT--------CTGT------A--TT---TA------------------T-GTAAATATTTTC-C-ATGTAC-----CTCCACGTACCA-CC----CATGGCCC-GAGTGAAATAAACT
gi|10 : tAGAAATAAACGCTTCTGTACGTTATGCCACTGTAACCAAATTGGTG---ATGAATTTCATTTT--------A-TTC-TT--GAATGTAAAGGAAAGGATAACA-AACAGCG---AT-------CAGTCTCAGACTTTGTGTAAATTGCGTAGAGATTGTTTAGAATATTGTT--CTGCTCCAAACACC--AAATAA-------T
gi|11 : CCAAACACTGTAAAAAA-------T---ATGAATTTA-GTCCTCCATAAATTC-TGT--ATAA-TTAAGAAAG--TCACATGTATGTTTGT-TCATTTCA----AAAACAAAT-AATTGCTGTCTG-TT-TGC---CTTTTC-TCTGTTT---GAC------------A--CT---TA----------------------AAATATGTAA-CTATATAC---------ATGTACCACTC----CACTGTCT-CAGTGancagtctcagactttgtg
gi|12 : TA-------------AAGAATACTGTTATTTCCCCCAAACACTA-AAATAG-------TT--GTGA-------TCTT------ATCTGTGT--ATCTGCTAAGAAAAGCT---GTGTATGTTTAT-T---TTGA----AAAATCAATGAAT-AATGCCTG-TT-CTCTGATGTTTTATTTG-TT---GATCCTTGT-------------------------------------TAAATCTTCTTAT-ATGTA
gi|13 : ATCAAC-AGT-ATTGTCTG-TTCTCCTAACGCTTTGTCTGTTT---GACCCCTGT------A--AT---T-------------------T-GTAATTATGT-----AAATACG----TT-CATGTACCATTC----CATGGTTT-GAGTGTACTAA
gi|14 : ttgaactggacaaaacaagtAAACAAATGGGAG---ATGAATTTCA--TT--------ATATTCTT--GAATGTAAGACATAGGGT---A-AAATGCAT------------AG----AGATTTTTT---AGATG-------------TAGAATATTGTT--CTGCTCCAAACACCtatgaactgaactgttctcct
gi|15 : tttgcactgaaagTATTTAT-T---TT-A----AAAATTAA--------TGTATG-TTCTCCTGATTTATCGTCTGTTTCATGACCCCTGTTACTGTA--TG---TA------------------T-GTAAATAT-TTT-C-ATGTGC-----C
gi|16 : tgaGTCTGTTT---GACCCCTGT------AATTTGCATA------------------T-GTAAATATGTTT-C-ATGTAC-----CT-CATGTACCATTC----CCTGGTTT-GATTGTAATAAACTattc
gi|17 : tTTTTCATCTGTTT---GACCCCTGT--------------TA------------------CCGTA----TATTT----TGTAC-----CT-CATGTACCATTC----CATGATTTCGAGTGgaa
gi|18 : TGT------A--TA---TA------------------T-TGAAATACTTTT-C-AT---------------GTACCATTC----CATGGTTT-GAGTGTAATAAACTaa
gi|19 : ga-GTATATACGTTT-C-GCACACTAATACC-CATGTACCATTC----TATGATTT-GAGTGAAATAAAgaaa
gi|2 : ATCTTTATTGGGGAAAGCTTGCGGTTCAATAACA-----TG-ACAACAAATT-GAATAAGGTTGTTTACATGTATGTATTTAACATGCATG-------ATAT-A---GGAAAA-GTAA-----GAAATCCATGAATTTCA-TGTTTG-AAA-GTA-TTT-AGACAAGTGGTGGCCTCTCAAACATGTAACACGCAG-T-TTTATGCA------ACGTA-TTTTAAAGTCAAGTGTTAACAAAGGCTATGAGATCAATTTTACAAAAATGACAGG--AGGATATATCTACGGCT-T--CAAAGGGTGTAATT----TACAGAATGTTCAACAAACAGAATTTGAATGTGATTAATATTCCACATT--ATTACAAG-AAGTTACGA---AAGATTT--------------GAACTACAAACCATCACCTTAC---TGTTGAATTAGGCAGATGAA--------T---A---AAAGGA-TGAACGCTTTTGTATATTATGCAACTGTAACCAAATTGGAGT--ATGAATTTCA--TT--------ATATTCTT--GAATGTAAAGCATAGTGCA--A-AATTACGT-C----------AG----A----TTTT---AACTA-------------AAGAATACTGCT--AT-TCCCAAACACT--AAATAG-------TTT-GTGATCTTATGCCTTCTAAA-ATTC-TGT--ATCT-CTAAGAAAGC-T---GCGCATGCTTAT-T---TTGA----AAATCCAAT-AAT-ACTGTCTG-TT-
gi|20 : agatatcctttgtatatgacaatttttacagaatg-GTGAATAAGTTT-C-ATGTAC-----AG-CATGTACCATTCTATATATGGTTT-GAGTGTAATAAat
gi|21 : AAAAAG--TT--GTTTCTTTTTAT-T---ATGA----AAA-TCAAC-AAT-ATTGTCTG-TTATCC
gi|3 : ACTTAGCA--AATT-------ATATGACAGGGAAAA--TAATA---GAG-TG-ATGACTTTCA-T-TTTG-AAAAGTAGTTTTA-ATAAATG-TGGCCTCTC------------TTTGAAT-T--GAGCATAGAACACGGAATTTTAACTCTAAATG--------GAAT---AAAACAATTGTG----AATCAAAGACTACAAGAT-----CGGTT-TTACAAAaag
gi|3 : atgcttcacagtgaaacttgatgatatcctttaaatgtaacaattttttactagaaggtctcttattgggcacaacgtgtcaacggcaatgataactaAATTATGACTTA-ATTTAGAACCACTAATCACCATCTTCCAGATCT---AGTAGGCAGATGGAAT-AA---CACGG---AAAGGAATAAACACTTCTGTATGTTATGCAACCGTAATCAAGTTGGAG---ATGAATGTTA--TT----------ATT-TT--aatggcgtgatggtattgctaattatgacttaatttagaaccactaatcaccatcttccagatctagtaggcagatggaataacacggaaaggaataaacacttctgtatgttatgcaaccgtaatcaagttggagatgaatgttattattttcttg
gi|4 : atgcttcacagtgaaacttgatgatatcctttaaatgtaacaattttttactagaaggtctcttattgggcacaacgtgtcaacggcaatgataactaacttagcaaattatatgacagggaaaataatagagtgatgactttcattttgaaaagtagttttaataaatgtggcctctctttgaattgagcatagaacacggaattttaactctaaatggaataaaacaattgtgaatcaaagactacaagatcggttttacaaaaatggcgtgatggtattgctAACAAAT--GAGTAAGGTT-TTTGCATACATGTACATAACATGCATG-------A-----CAAAGAGA--GCAAC----GAA-TCCATGGATTTCAGT-TTTG-AAAAGTA-CTTTAGACAAGTA-CGGATTGTCA-------AACATTTGG-T-cttg
gi|4 : atggtctgcggtaaaacgggaagaaatcctttgtatataacaagttttacaagaatgatctcttattggcaaagtttAGAAGA-GCAAC----GAA-TCCATGGATTTCA-G-TTTaccagnnnnnnnnnnnnnnnnnnnnnnnagaagagcaacgaatccatggatttcagtttatttttatttttttttacaaaaaaggcacgaagatatatcta
gi|5 : atggtctgcggtaaaacgggaagaaatcctttgtatataacaagttttacaagaatgatctcttattggcaaagtttaacaaatgagtaaggtttttgcatacatgtacataacatgcatgacaaagagagcaacgaatccatggatttcagttttgaaaagtactttagacaagtacggattgtcaaacatttggtaccagnnnnnnnnnnnnnnnnnnnnnnnCATTGCAT---A-CAGTCCGT------------AG----AGATTTTTT---ACATA-------------CAGAATATTATT--CTGTCCCAAACACCA-AAACAG-------TTT-GTGAATTCATGTCTTCCAAAGATCC-TGTAGATTT-TTAAGATAT--T---G-GTGCCTTT-T-T---TTGAATTGAAAATCAGC-AAC-AGTATCTG-TTCTCCTAACTCTTTGTTTGTTT---GACCCCTGTA-----A--TT---TGTAATTAGCAATGTATATTT-GTAAATACGTTT-C-ATATAC-----CT-CATGTGCCATTC----CATGGTTT-GAGTGTAATAAACTatttttatttttttttacaaaaaaggcacgaagatatatcta
gi|6 : aTATATAA-GTT--GTATACGAATTTTGAATGTGATGAATATTTGACATTTGAC-AAAGACAATTTAAAAGAAAAAAACTATGA-TAA-ATGCA-AACTACAAGACACCGCTTTCT---CTTCCAAGTAGGCAGGTGGAG-TGACATT---G---AAGGAAATGAAAGCGATTATAGATTATGTATTTGGAAGCAGATTGAAGATCATGAATTTTA--Tgaa
gi|7 : atttctcaaaagtggctcgataatatttctgagttatcaagggtagtggctAG---ATGA-TTTCG--TTCTGAGCTTA-AGT-CT--AAA-GTAAGACATTGTGT---A-AATTGCCT---T-------TAG----ATTTTTTTTT--AGATA-------------TAGAATATTGTT--CTGCTCCAAACACCA-AAAAAA-------TGT-GTGAACTCATGTCTTCCAAAGATCT-TGT--A-GT-TTAAGAAAG--T----TGTGTCTTTTT-G---TTGagtattc
gi|8 : ttatctttccactgaattaagaaatacaaaatgccttcttttcattatgtaatagtcggtgataatttagactatcaGAG---ATTAATTTCA--TT--------ATATTCTT--CAATGTAAAACAATGTAC---A-AATTGC-----T-------TAG----AGATTTTT----AGCTA-------------TAGAATACTGTT--CTGCCCCAAACATCA-AAAAAGAATTTTTTTT-GAGAACTCATGTCGTTCAAAGATCC-AGT--ATTT-TCAGGAAAA--T----TGTGTCTTTTTGT---TTG-----AAAATCAAC-AAT-ACTGTCTGTTT-TCCTAACCCTTTG------------CCTCTGT------A--AT---T-------------------T-GTAATTA
gi|9 : tgaAACTAGAAACCACCACCTTCC---TCTCGAATTAGGCAGATAGAGC-AA---T---ATACAAAAGAAAGAACGTTATTGTAGTTTATGAAATTGTAATCATATTGGAC---AAGAATTTCA--TT--------A-AAT-TTCAGAATGTATAGCATTGTGT---AGAATTa
Alignments
lowQualScore : 1 2222 22222 1 1 3333333 11 22222 111 1 1 1 333333333 111 111 44444444 222 11 1 4444444 1 222222 1 3333 2222222222222 444 11 222222222 44444444444 111 11111 111 4444444444444 1111 3333333333333333 111111 22222222 2222222 1111 1 111111 4444444444444444444444444444444 11111111
lowQualScore : 5 1 3333 77777 5 7 2 1 1 33 2222222 3 11 8 0 77777 111 8 3 0 3 2 0 1 0 111111111 111 7 3 7 222 3 88888888 1 333 88 2 0 1 3333333 3 7 22 1 666666 1 3 4444 0 1 0 8888888888888 0 222 1 8 8 1 00 8 555555555 3 333 77777777777 6 1 222 0 22222 0 1 333 5 3 1111111111111 0000 44 5555555555555555 333333 1 66 66 1 66666666 22 1 3 5 77 1 5 3333333 1 1 3 4 777 0000 77 4 3 4 7 0 777 222222 3333333333333333333333333333333 4 66 88888888 9999 4
lowQualScore : . . .... ..... . . . . . .. ....... . .. . . ..... ... . . . . . . . . ......... ... . . . ... . ........ . ... .. . . . ....... . . .. . ...... . . .... . . . ............. . ... . . . . .. . ......... . ... ........... . . ... . ..... . . ... . . ............. .... .. ................ ...... . .. .. . ........ .. . . . .. . . ....... . . . . ... .... .. . . . . . ... ...... ............................... . .. ........ .... .
lowQualScore : 5 0 0000 00000 0 3 0 0 0 55 5555555 2 88 0 8 88888 888 0 2 0 2 5 0 0 5 888888888 000 3 7 3 777 7 33333333 0 333 33 3 7 0 3333333 3 3 00 0 555555 0 3 0000 7 0 7 3333333333333 7 777 0 0 0 0 88 8 888888888 8 444 22222222222 3 7 222 9 55555 8 0 888 0 4 1111111111111 6666 66 4444444444444444 888888 1 99 11 0 00000000 11 4 0 7 99 7 7 1111111 1 0 9 4 888 6666 11 4 7 4 8 4 888 888888 7777777777777777777777777777777 1 55 00000000 4444 4
consensus : NATCTTTATCGGGNAAAGCTTGCGGTTCAACAGCAATCATTGGACAACAAATTGAGTAAGGTTGTTTACATNTATGTACNTAACATGCAT-------GATATGACAAAG-AAAAGTAACA---GAATCCATGGATTTCA-T-TTT-GAAAAGTA-TTTTAGACAAGTG-TGGNCTCTCGAACAT-T------CGG-T-TGAGCATGNAACACGNAGTTTTAACGCTAAGTG--------GANTA---AATCAATT--GCGAACCAAAGACTANAAGAT-------CGGTT-TTACAAANNGTGNAANNAAAATANATAA-GTT--GCAAACGAATTTTGAATGTGATNAATATTCGACATT--ACAAAGA-AA-TTACGAGAA---AACTATGA-TAA-ATTTAGAACTACAAACCACCGCCTTCC---TCTCGAANTAGGCAGATGGAGTGA---T---G---AAAGGAATGAACGCTTTTGTACGTTATGCAACTGTAACCAAATTGGAG---ATGAATTTCATTATATTCTTGAATGTAAAG-----CATTGNGT---A-AATTGCGT---T-------TAG----AGATTTT-T----------T---AGATA-----TAGAATACTGTT--CTGCCCCAAACACC--AAAANAG-------TTTGTGAACTCATGTCTTCCAAAGATCC-TGT--ATCT-CTAAGAAAG--T---GTGTGTNTTTAT-T---TTGA----AAAATCAAC-AAT-ACTGTCTG-TT-TCCTGACTTTTCGTCTGTT---TGACCC------CTGT-A--TT---TA------------------T-GTAAATACGTTTC-ATGTAC-----CT-CATGTACCATTC----CATGGTTT-GAGTGTAATAAACT
Reference ( family-705 ) : NATCTTTATCGGGNAAAGCTTGCGGTTCAACAGCAATCATTGGACAACAAATTGAGTAAGGTTGTTTACATNTATGTACNTAACATGCAT-------GATATGACAAAG-AAAAGTAACA---GAATCCATGGATTTCA-T-TTT-GAAAAGTA-TTTTAGACAAGTG-TGGNCTCTCGAACAT-T------CGG-T-TGAGCATGGAACACGNAGTTTTAACGCTAAGTG--------GANTA---AATCAATT--GCGAATCAAAGGCTANAAGAT-------CGGTT-TTACAAANNGTGNAANNAAAATANATAA-GTT--GCAAACGAATTTTGAATGTGATNAATATTCGACATT--ACAAAGA-AAGTTACGAGAAAAGANCTATGA-TAA-ATNTAGAACTACAAANCACCGCCTTCC---TCTCGAANTAGGCAGATGGAGTGA---T---G---AAAGGAATGAACGCTTTTGTACGTTATGCAACTGTAACCAAATTGGAG---ATGAATTTCATTATATTCTTGAATGTAAAG-----CATTGNGT---A-AATTGCGT---T-------TAG----AGATTTT-T----------T---AGATA-----TAGAATACTGTT--CTGCCCCAAACACC--AAAANAG-------TTTGTGAACTCATGTCTTCCAAAGATCC-TGT--ATCT-CTAAGAAAG--T---GTGTGTNTTTAT-T---TTGA----AAAATCAAC-AAT-ACTGTCTG-TT-TCCTGACTTTTCGTCTGTT---TGACCC------CTGT-A--TT---TA------------------T-GTAAATATGTTTC-ATGTAC-----CT-CATGTACCATTC----CATGGTTT-GAGTGTAATAAACT
gi|1 : ATCTT-ATCGGGCAAAGCTTA----TCAACAGCAATCATTGGATAACAAACTTGGCAAGGTTATTTATATCTATGTACGTAACATACATGTACATAGATATGACAAAGAAAAAGTAACAATTAAATCCATAGATTTCA-T-TTCGGAAAAGTA-TGTTAGACAGGTG-TGAACTCTGGAACAT-T------TGG-TATGAGCATGAAACACGCTGTTATAATGCTATGTG--------GATTA---AGTTAACT--GCGAACCAAAGGCTATAAGAT-------CAATTATTACAAATTATAAAAAAAAAATAAATAA-ATT----AAACAAATTTTGACTGTGAGAAATACTTGACATT--ACAAAGA-AAGTTACGAGAA---ATCTTTAT-TAAGATATAGAACTACAAA-CTTTGACTTCC----CT-----------------GTGA-----------AAACGAATGAACGCTTTTGTATGTTTTGTAACTGTAACCAAATTGGAA---ACGAAT---------TTCTGGAATGTAAAG-----CATTGAGC---A-AATTACATACATGTACCGGTAG----GTGTTTT-T----------TTTAAAATA-----CAAAGTAGTGTT--CTGCCCCAAACACC--AAAAGAAT------TTTGTGAATTCATGTCTTCTAAAGATTC-CGT--ATCT-CTAAAAAAA--T---ATGTATGTTTAT-T---TTGA----AAAATCAAT-AAT-ATTGTCTG-TT---CTGATTTTTCGTCTGTT---T-----------CTGT-A--TT---TA------------------T-GTAAATATTTTCC-ATGTAC-----CTCCACGTACCA-CC----CATGGCCC-GAGTGAAATAAACT
gi|10 : tAGAAATAAACGCTTCTGTACGTTATGCCACTGTAACCAAATTGGTG---ATGAATTTCATTTTATTCTTGAATGTAAAG-----GAAAGGATAACA-AACAGCGA---T-------CAGTCTCAGACTTTGTGTAAATTGCGT---AGAGATTGTTTAGAATATTGTT--CTGCTCCAAACACC--AAA
gi|11 : CCAAACACTGTAAAAAA----------TATGAATTTA-GTCCTCCATAAATTC-TGT--ATAA-TTAAGAAAG--TCACATGTATGTTTGT-TCATTTCA----AAAACAAAT-AATTGCTGTCTG-TT-TGC---CTTTTC-TCTGTT---TGAC-------------A--CT---TA----------------------AAATATGTAACTATATAC---------ATGTACCACTC----CACTGTCT-CAGTGtaatancagtctcagactttgtg
gi|12 : TA-----AAGAATACTGTTATTTCCCCCAAACACT--AAAATAG-------TT-GTGA-------TCTT------ATCTGTGT--ATCTGCTAAGAAAAGCT---GTGTATGTTTAT-T---TTGA----AAAATCAATGAAT-AATGCCTG-TT-CTCTGATGTTTTATTTG-T---TGATCC------TTGT-
gi|13 : ATCAAC-AGT-ATTGTCTG-TTCTCCTAACGCTTTGTCTGTT---TGACCC------CTGT-A--AT---T-------------------T-GTAATTATGT----AAATACG----TT-CATGTACCATTC----CATGGTTT-GAGTGTACTAAtaaatcttcttatatgta
gi|14 : ttgaactggacaaaacaagtAAACAAATGGGAG---ATGAATTTCATTATATTCTTGAATGTAAGA-----CATAGGGT---A-AAATGCA------------TAG----AGATTTT-T----------T---AGATG-----TAGAATATTGTT--CTGCTCCAAACACC--tatgaactgaactgttctcct
gi|15 : tttgcactgaaagTATTTAT-T---TT-A----AAAATTAA--------TGTATG-TTCTCCTGATTTATCGTCTGTTTCATGACCCCTGTTACTGT-A--TG---TA------------------T-GTAAATAT-TTTC-ATGTGC-----C
gi|16 : tgaGTCTGTT---TGACCC------CTGT-AATTTGCATA------------------T-GTAAATATGTTTC-ATGTAC-----CT-CATGTACCATTC----CCTGGTTT-GATTGTAATAAACTattc
gi|17 : tTTTTCATCTGTT---TGACCC------CTGT---------TA------------------CCGTA----TATTT---TGTAC-----CT-CATGTACCATTC----CATGATTTCGAGTGgaa
gi|18 : TGT-A--TA---TA------------------T-TGAAATAC-TTT--------------T-CATGTACCATTC----CATGGTTT-GAGTGTAATAAACTaa
gi|19 : ga-GTATATACGTTTC-GCACACTAATACC-CATGTACCATTC----TATGATTT-GAGTGAAATAAAgaaa
gi|2 : ATCTTTATTGGGGAAAGCTTGCGGTTCAATAACA-----TG-ACAACAAATTGAATAAGGTTGTTTACATGTATGTATTTAACATGCAT-------GATAT----AGG-AAAAGTAAGA----AATCCATGAATTTCA-TGTTT-GAAA-GTA-TTT-AGACAAGTGGTGGCCTCTCAAACATGTAACACGCAG-T-TT--TATGCAAC--GTA-TTTTAAAGTCAAGTGTTAACAAAGGCTATGAGATCAATTTTACAAA--AATGACAGGAGGATATATCTACGGCT-T--CAAAGGGTGTAATT----TACAGAATGTTCAACAAACAGAATTTGAATGTGATTAATATTCCACATT--A----------TTACAAGAA----GTTACGA-AAG-ATTT-GAACTACAAACCATCACCTTAC---TGTTGAATTAGGCAGATGAA-------T---A---AAAGGA-TGAACGCTTTTGTATATTATGCAACTGTAACCAAATTGGAGT--ATGAATTTCATTATATTCTTGAATGTAAAG-----CATAGTGCA--A-AATTACG----T-------CAG----A----TT-T----------T---AACTA-----AAGAATACTGCT--AT-TCCCAAACACT---AAATAG-------TTTGTGATCTTATGCCTTCTAAA-ATTC-TGT--ATCT-CTAAGAAAGC-T---GCGCATGCTTAT-T---TTGA----AAATCCAAT-AAT-ACTGTCTG-TT-
gi|20 : agatatcctttgtatatgacaatttttacagaatg-GTGAATAAGTTTC-ATGTAC-----AG-CATGTACCATTCTATATATGGTTT-GAGTGTAATAAat
gi|21 : AAAAAG--TT--GTTTCTTTTTAT-T---ATGA----AAA-TCAAC-AAT-ATTGTCTG-TTATCC
gi|3 : ACTTAGCA--AAT-------TATATGACAGGG-AAAA-TAATA---GAGTG-ATGACTTTCA-T-TTT-GAAAAGTAGTTTTA-ATAAATG-TGGCCTCTC-----T-T------TGAAT-TGAGCATAGAACACGGAATTTTAACTCTAAATG--------GAATA---AAACAATT--GTGAATCAAAGACTACAAGAT-------CGGTT-TTACAAAaag
gi|3 : atgcttcacagtgaaacttgatgatatcctttaaatgtaacaattttttactagaaggtctcttattgggcacaacgtgtcaacggcaatgataactaAATTATGACTTA-ATTTAGAACCACTAATCACCATCTTCCAGATCT---AGTAGGCAGATGGAATAA---CACGG---AAAGGAATAAACACTTCTGTATGTTATGCAACCGTAATCAAGTTGGAG---ATGAATGTTATTATTTTCTTGaatggcgtgatggtattgctaattatgacttaatttagaaccactaatcaccatcttccagatctagtaggcagatggaataacacggaaaggaataaacacttctgtatgttatgcaaccgtaatcaagttggagatgaatgttattattttcttg
gi|4 : atgcttcacagtgaaacttgatgatatcctttaaatgtaacaattttttactagaaggtctcttattgggcacaacgtgtcaacggcaatgataactaacttagcaaattatatgacagggaaaataatagagtgatgactttcattttgaaaagtagttttaataaatgtggcctctctttgaattgagcatagaacacggaattttaactctaaatggaataaaacaattgtgaatcaaagactacaagatcggttttacaaaaatggcgtgatggtattgctAACAAAT-GAGTAAGGTT-TTTGCATACATGTACATAACATGCAT-------GA-----CAAAG-AGA-GCAAC----GAATCCATGGATTTCAGT-TTT-GAAAAGTA-CTTTAGACAAGTA-CGGATTGTCAAACAT-T------TGG-T-
gi|4 : atggtctgcggtaaaacgggaagaaatcctttgtatataacaagttttacaagaatgatctcttattggcaaagtttAG-AAGAGCAAC----GAATCCATGGATTTCA-G-TTT-accagnnnnnnnnnnnnnnnnnnnnnnnagaagagcaacgaatccatggatttcagtttatttttatttttttttacaaaaaaggcacgaagatatatcta
gi|5 : atggtctgcggtaaaacgggaagaaatcctttgtatataacaagttttacaagaatgatctcttattggcaaagtttaacaaatgagtaaggtttttgcatacatgtacataacatgcatgacaaagagagcaacgaatccatggatttcagttttgaaaagtactttagacaagtacggattgtcaaacatttggtaccagnnnnnnnnnnnnnnnnnnnnnnn-----CATTGCAT---A-CAGTCCGT------------AG----AGATTTT-T----------T---ACATA-----CAGAATATTATT--CTGTCCCAAACACC--AAAACAG-------TTTGTGAATTCATGTCTTCCAAAGATCC-TGTAGATTT-TTAAGATAT--T---G-GTGCCTTT-T-T---TTGAATTGAAAATCAGC-AAC-AGTATCTG-TTCTCCTAACTCTTTGTTTGTT---TGACCC------CTGTAA--TT---TGTAATTAGCAATGTATATTT-GTAAATACGTTTC-ATATAC-----CT-CATGTGCCATTC----CATGGTTT-GAGTGTAATAAACTatttttatttttttttacaaaaaaggcacgaagatatatcta
gi|6 : aTATATAA-GTT--GTATACGAATTTTGAATGTGATGAATATTTGACATTTGACAAAGACAATTTAAAAGAAAAAAACTATGA-TAA-ATGCA-AACTACAAGACACCGCTTTCT---CTTCCAAGTAGGCAGGTGGAGTGACATT---G---AAGGAAATGAAAGCGATTATAGATTATGTATTTGGAAGCAGATTGAAGATCATGAATTTTATAGTATTCgaa
gi|7 : atttctcaaaagtggctcgataatatttctgagttatcaagggtagtggctAG---ATGA-TTTCGTTCTGAGCTTAAGTCTAAAGTAAGACATTGTGT---A-AATTGCCT---T-------TAG----ATTTTTTTT----------T---AGATA-----TAGAATATTGTT--CTGCTCCAAACACC--AAAAAAA-------TGTGTGAACTCATGTCTTCCAAAGATCT-TGT--A-GT-TTAAGAAAG--T----TGTGTCTTTTT-G---TTG
gi|8 : ttatctttccactgaattaagaaatacaaaatgccttcttttcattatgtaatagtcggtgataatttagactatcaGAG---ATTAATTTCATTATATTCTTCAATGTAAAA-----CAATGTAC---A-AATTGC-----T-------TAG----AGATTTT-T--------------AGCTA-----TAGAATACTGTT--CTGCCCCAAACATC--AAAAAAGAATTTTTTTTGAGAACTCATGTCGTTCAAAGATCC-AGT--ATTT-TCAGGAAAA--T----TGTGTCTTTTTGT---TTG-----AAAATCAAC-AAT-ACTGTCTGTTT-TCCTAACCCTTTG------------CCT------CTGT-A--AT---T-------------------T-GTAATTA
gi|9 : tga-TAA-ATTTA--ACTAGAAACCACCACCTTCC---TCTCGAATTAGGCAGATAGAGCAA---T---ATACAAAAGAAAGAACGTTATTGTAGTTTATGAAATTGTAATCATATTGGAC---AAGAATTTCATTAAATTTCAGAATGTATAG-----CATTGTGT---AGAATT---T---T-------TAA----Aa
Alignments
lowQualScore : 11111111111111111111111111111111111
lowQualScore : 1 2222 22222 1 1 3333333 11 22222 111 1 1 1 2222222 1 1 1 222 22222222222222222222222222222222222 2222 4444444444444444444 11 222222222 44444444444 111 11111 111 4444444444444 1111 3333333333333333 111111 22222222 2222222 1111 1 111111 555555555555555555555555555555555555 11111111
lowQualScore : 5 1 3333 77777 5 7 2 1 1 33 2222222 3 11 8 0 77777 111 8 3 0 3 2 0 1 0 5555555 1 1 7 0 7 1 3 4 0 2 1 1 11 3 555 44 22 1 66666666666666666666666666666666666 0 8888 1 0 5555555555555555555 0 7 1 8 8 1 00 0 555555555 3 55 77777777777 6 1 222 0 22222 0 1 333 5 3 1111111111111 0000 44 5555555555555555 333333 1 66 66 1 66666666 22 1 3 5 77 1 5 3333333 1 1 3 4 777 0000 77 4 3 4 7 0 777 222222 222222222222222222222222222222222222 88 66 77777777 9999 4
lowQualScore : . . .... ..... . . . . . .. ....... . .. . . ..... ... . . . . . . . . ....... . . . . . . . . . . . . .. . ... .. .. . ................................... . .... . . ................... . . . . . . .. . ......... . .. ........... . . ... . ..... . . ... . . ............. .... .. ................ ...... . .. .. . ........ .. . . . .. . . ....... . . . . ... .... .. . . . . . ... ...... .................................... .. .. ........ .... .
lowQualScore : 5 0 0000 00000 0 3 0 0 0 55 5555555 2 88 0 8 88888 888 0 2 0 2 5 0 0 5 0000000 0 0 3 7 7 0 3 0 7 0 0 0 33 3 000 00 00 0 00000000000000000000000000000000000 7 3333 0 7 3333333333333333333 7 3 2 0 0 0 88 8 888888888 8 66 22222222222 3 7 222 9 55555 8 0 888 0 4 1111111111111 6666 66 4444444444444444 888888 1 99 11 0 00000000 11 4 0 7 99 7 7 1111111 1 0 9 4 888 6666 11 4 7 4 8 4 888 888888 666666666666666666666666666666666666 99 55 66666666 4444 4
consensus : NATCTTTATCGGGNAAAGCTTGCGGTTCAACAGCAATCATTGGACAACAAATTGAGTAAGGTTGTTTACATNTATGTACNTAACATGCAT-------GATATGACAAAG-AAAAGTAACA---GAATCCATGGATTTCA-T-TTT-GAAAAGTA-TTTTAGACAAGTG-TGGNCTCTCGAACATTTGG-T-TGAGCATGNAACACGCAGTTTTAACGCTACGTGGATTAAA-TCAANTGCGAACCAAAGGCTATAAGATCGATT-TTACAAANNATGANAGGAGGATATAT-----------AAG--------TTGCA--------AACGAAT----TTTGAATGTGATNAATATTCGACATT--ACAAAGA-AA-TT----ACGAGAAAACTATGA-TAA-ATTTAGAACTACAAACCACCGCCTTCC---TCTCGAANTAGGCAGATGGAGTAA---T---G---AAAGGAATGAACGCTTTTGTACGTTATGCAACTGTAACCAAATTGGAG---ATGAATTTCATTATATTCTTGAATGTAAAG-----CATTGNGT---A-AATTGCGT---T-------TAG----AGATTTT-T----------T---AGATA-----TAGAATACTGTT--CTGCCCCAAACACC--AAAANAG-------TTTGTGAACTCATGTCTTCCAAAGATCC-TGT--ATCT-CTAAGAAAG--T---GTGTGTNTTTAT-T---TTGA----AAAATCAAC-AAT-ACTGTCTG-TT-TCCTGACTTTTCGTCTGTT---TGACCC------CTGT-A-----T--T---TA------------------T-GTAAATACGTTTC-ATGTAC-----CT-CATGTACCATTC----CATGGTTT-GAGTGTAATAAACT
Reference ( family-705 ) : NATCTTTATCGGGNAAAGCTTGCGGTTCAACAGCAATCATTGGACAACAAATTGAGTAAGGTTGTTTACATNTATGTACNTAACATGCAT-------GATATGACAAAG-AAAAGTAACA---GAATCCATGGATTTCA-T-TTT-GAAAAGTA-TTTTAGACAAGTG-TGGNCTCTCGAACATTCGG-T-TGAGCATGNAACACGNAGTTTTAACGCTAAGTGGANTAAA-TCAATTGCGAACCAAAGACTANAAGATCGGTT-TTACAAANNGTGNAANNAAAATANAT-----------AAG--------TTGCA--------AACGAAT----TTTGAATGTGATNAATATTCGACATT--ACAAAGA-AA-TT----ACGAGAAAACTATGA-TAA-ATTTAGAACTACAAACCACCGCCTTCC---TCTCGAANTAGGCAGATGGAGTGA---T---G---AAAGGAATGAACGCTTTTGTACGTTATGCAACTGTAACCAAATTGGAG---ATGAATTTCATTATATTCTTGAATGTAAAG-----CATTGNGT---A-AATTGCGT---T-------TAG----AGATTTT-T----------T---AGATA-----TAGAATACTGTT--CTGCCCCAAACACC--AAAANAG-------TTTGTGAACTCATGTCTTCCAAAGATCC-TGT--ATCT-CTAAGAAAG--T---GTGTGTNTTTAT-T---TTGA----AAAATCAAC-AAT-ACTGTCTG-TT-TCCTGACTTTTCGTCTGTT---TGACCC------CTGT-A-----T--T---TA------------------T-GTAAATACGTTTC-ATGTAC-----CT-CATGTACCATTC----CATGGTTT-GAGTGTAATAAACT
gi|1 : ATCTT-ATCGGGCAAAGCTTA----TCAACAGCAATCATTGGATAACAAACTTGGCAAGGTTATTTATATCTATGTACGTAACATACATGTACATAGATATGACAAAGAAAAAGTAACAATTAAATCCATAGATTTCA-T-TTCGGAAAAGTA-TGTTAGACAGGTG-TGAACTCTGGAACATTTGG-TATGAGCATGAAACACGCTGTTATAATGCTATGTGGATTAAG-TTAACTGCGAACCAAAGGCTATAAGATCAATTATTACAAATTATAAAAAAAAAATAAAT-----------AAA--------TT--A--------AACAAAT----TTTGACTGTGAGAAATACTTGACATT--ACAAAGA-AAGTT----ACGAGAAATCTTTAT-TAAGATATAGAACTACAAACT-TTGACTTCC----CT-----------------GTGA-----------AAACGAATGAACGCTTTTGTATGTTTTGTAACTGTAACCAAATTGGAA---ACGAAT---------TTCTGGAATGTAAAG-----CATTGAGC---A-AATTACATACATGTACCGGTAG----GTGTTTT-T----------TTTAAAATA-----CAAAGTAGTGTT--CTGCCCCAAACACC--AAAAGAAT------TTTGTGAATTCATGTCTTCTAAAGATTC-CGT--ATCT-CTAAAAAAA--T---ATGTATGTTTAT-T---TTGA----AAAATCAAT-AAT-ATTGTCTG-TT---CTGATTTTTCGTCTGTT---T-----------CTGT-A-----T--T---TA------------------T-GTAAATATTTTCC-ATGTAC-----CTCCACGTACCA-CC----CATGGCCC-GAGTGAAATAAACT
gi|10 : tAGAAATAAACGCTTCTGTACGTTATGCCACTGTAACCAAATTGGTG---ATGAATTTCATTTTATTCTTGAATGTAAAG-----GAAAGGATAACA-AACAGCGA---T-------CAGTCTCAGACTTTGTGTAAATTGCGT---AGAGATTGTTTAGAATATTGTT--CTGCTCCAAACACC--AAA
gi|11 : CCAAACACTGTAAAAAA----------TATGAATTTA-GTCCTCCATAAATTC-TGT--ATAA-TTAAGAAAG--TCACATGTATGTTTGT-TCATTTCA----AAAACAAAT-AATTGCTGTCTG-TT-TGC---CTTTTC-TCTGTT---TGAC-------------A-----C--T---TA----------------------AAATATGTAACTATATAC---------ATGTACCACTC----CACTGTCT-CAGTGtaatancagtctcagactttgtg
gi|12 : TA-----AAGAATACTGTTATTTCCCCCAAACACT--AAAATAG-------TT-GTGA-------TCTT------ATCTGTGT--ATCTGCTAAGAAAAGCT---GTGTATGTTTAT-T---TTGA----AAAATCAATGAAT-AATGCCTG-TT-CTCTGATGTTTTATTTG-T---TGATCC------TTGT-
gi|13 : ATCAAC-AGT-ATTGTCTG-TTCTCCTAACGCTTTGTCTGTT---TGACCC------CTGT-AATTTGTAAT---TA------------------T-GTAAATACGTT-----------------CATGTACCATTC----CATGGTTT-GAGTGTACTAAtaaatcttcttatatgta
gi|14 : ttgaactggacaaaacaagtAAACAAATGGGAG---ATGAATTTCATTATATTCTTGAATGTAAGA-----CATAGGGT---A-AAATGCA------------TAG----AGATTTT-T----------T---AGATG-----TAGAATATTGTT--CTGCTCCAAACACC--tatgaactgaactgttctcct
gi|15 : tttgcactgaaagTATTTAT-T---TT-A----AAAATTAA--------TGTATG-TTCTCCTGATTTATCGTCTGTTTCATGACCCCTGTTACTGT-A-----T--G---TA------------------T-GTAAATAT-TTTC-ATGTGC-----C
gi|16 : tgaGTCTGTT---TGACCC------CTGT-AAT---T--TGCATA------------------T-GTAAATATGTTTC-ATGTAC-----CT-CATGTACCATTC----CCTGGTTT-GATTGTAATAAACTattc
gi|17 : tTTTTCATCTGTT---TGACCC------CTGT--------------TA------------------CCGTA--TA--TTT---TGTAC-----CT-CATGTACCATTC----CATGATTTCGAGTGgaa
gi|18 : TGT-A-----T--A---TA------------------T-TGAAATAC-TTT--------------T-CATGTACCATTC----CATGGTTT-GAGTGTAATAAACTaa
gi|19 : ga-GTATATACGTTTC-GCACACTAATACC-CATGTACCATTC----TATGATTT-GAGTGAAATAAAgaaa
gi|2 : ATCTTTATTGGGGAAAGCTTGCGGTTCAATAACA-----TG-ACAACAAATTGAATAAGGTTGTTTACATGTATGTATTTAACATGCAT-------GATAT----AGG-AAAAGTAAGA----AATCCATGAATTTCA-TGTTT-GAAA-GTA-TTT-AGACAAGTGGTGGCCTCTCAAACAT--------------GTAACACGCAGTTTT-ATGCAACGTATTTTAAAGTCAAGTGTTAA-CAAAGGCTATGAGATCAATT-TTACAAAAA-TGACAGGAGGATATATCTACGGCTTCAAAGGGTGTAATTTACAGAATGTTCAACAAACAGAATTTGAATGTGATTAATATTCCACATT-----------A-TT----ACAAG-AAGTTACGA-AAG-ATTT-GAACTACAAACCATCACCTTAC---TGTTGAATTAGGCAGATG----AA---T---A---AAAGG-ATGAACGCTTTTGTATATTATGCAACTGTAACCAAATTGGAGT--ATGAATTTCATTATATTCTTGAATGTAAAG-----CATAGTGCA--A-AATTACG----T-------CAG----A----TT-T----------T---AACTA-----AAGAATACTGCT--AT-TCCCAAACACT---AAATAG-------TTTGTGATCTTATGCCTTCTAAA-ATTC-TGT--ATCT-CTAAGAAAGC-T---GCGCATGCTTAT-T---TTGA----AAATCCAAT-AAT-ACTGTCTG-TT-
gi|20 : agatatcctttgtatatgacaatttttacagaatg-GTGAATAAGTTTC-ATGTAC-----AG-CATGTACCATTCTATATATGGTTT-GAGTGTAATAAat
gi|21 : AAAAAG--TT--GTTTCTTTTTAT-T---ATGA----AAA-TCAAC-AAT-ATTGTCTG-TTATCC
gi|3 : ACTTAGCA--AAT-------TATATGACAGGG-AAAA-TAATA---GAGTG-ATGACTTTCA-T-TTT-GAAAAGTAGTTTTA-ATAAATG-TGGCCTCTC-----TTTGAAT-TGAGCATAGAACACGGAATTTTAACTCTAAATGGAATAAA-ACAATTGTGAATCAAAGACTACAAGATCGGTT-TTACAAAaag
gi|3 : atgcttcacagtgaaacttgatgatatcctttaaatgtaacaattttttactagaaggtctcttattgggcacaacgtgtcaacggcaatgataactaAATTATGACTTA-ATTTAGAACCACTAATCACCATCTTCCAGATCT---AGTAGGCAGATGGAATAA---CACGG---AAAGGAATAAACACTTCTGTATGTTATGCAACCGTAATCAAGTTGGAG---ATGAATGTTATTATTTTCTTGaatggcgtgatggtattgctaattatgacttaatttagaaccactaatcaccatcttccagatctagtaggcagatggaataacacggaaaggaataaacacttctgtatgttatgcaaccgtaatcaagttggagatgaatgttattattttcttg
gi|4 : atgcttcacagtgaaacttgatgatatcctttaaatgtaacaattttttactagaaggtctcttattgggcacaacgtgtcaacggcaatgataactaacttagcaaattatatgacagggaaaataatagagtgatgactttcattttgaaaagtagttttaataaatgtggcctctctttgaattgagcatagaacacggaattttaactctaaatggaataaaacaattgtgaatcaaagactacaagatcggttttacaaaaatggcgtgatggtattgctAACAAAT-GAGTAAGGTT-TTTGCATACATGTACATAACATGCAT-------GA-----CAAAG-AGA-GCAAC----GAATCCATGGATTTCAGT-TTT-GAAAAGTA-CTTTAGACAAGTA-CGGATTGTCAAACATTTGG-T-
gi|4 : atggtctgcggtaaaacgggaagaaatcctttgtatataacaagttttacaagaatgatctcttattggcaaagtttAG-AAGAGCAAC----GAATCCATGGATTTCA-G-TTT-accagnnnnnnnnnnnnnnnnnnnnnnnagaagagcaacgaatccatggatttcagtttatttttatttttttttacaaaaaaggcacgaagatatatcta
gi|5 : atggtctgcggtaaaacgggaagaaatcctttgtatataacaagttttacaagaatgatctcttattggcaaagtttaacaaatgagtaaggtttttgcatacatgtacataacatgcatgacaaagagagcaacgaatccatggatttcagttttgaaaagtactttagacaagtacggattgtcaaacatttggtaccagnnnnnnnnnnnnnnnnnnnnnnn-----CATTGCAT---A-CAGTCCGT------------AG----AGATTTT-T----------T---ACATA-----CAGAATATTATT--CTGTCCCAAACACC--AAAACAG-------TTTGTGAATTCATGTCTTCCAAAGATCC-TGTAGATTT-TTAAGATAT--T---G-GTGCCTTT-T-T---TTGAATTGAAAATCAGC-AAC-AGTATCTG-TTCTCCTAACTCTTTGTTTGTT---TGACCC------CTGTAA-----T--T---TGTAATTAGCAATGTATATTT-GTAAATACGTTTC-ATATAC-----CT-CATGTGCCATTC----CATGGTTT-GAGTGTAATAAACTatttttatttttttttacaaaaaaggcacgaagatatatcta
gi|6 : aTATAT-----------AAG--------TTGTA--------TACGAAT----TTTGAATGTGATGAATATTTGACATTTGACAAAGACAA-TTTAAAAGAAAAAAACTATGA-TAA-ATGCA-AACTACAAGACACCGCTTTCT---CTTCCAAGTAGGCAGGTGGAGTGACATT---G---AAGGAAATGAAAGCGATTATAGATTATGTATTTGGAAGCAGATTGAAGATCATGAATTTTATAGTATTCgaa
gi|7 : atttctcaaaagtggctcgataatatttctgagttatcaagggtagtggctAG---ATGA-TTTCGTTCTGAGCTTAAGTCTAAAGTAAGACATTGTGT---A-AATTGCCT---T-------TAG----ATTTTTTTT----------T---AGATA-----TAGAATATTGTT--CTGCTCCAAACACC--AAAAAAA-------TGTGTGAACTCATGTCTTCCAAAGATCT-TGT--A-GT-TTAAGAAAG--T----TGTGTCTTTTT-G---TTG
gi|8 : ttatctttccactgaattaagaaatacaaaatgccttcttttcattatgtaatagtcggtgataatttagactatcaGAG---ATTAATTTCATTATATTCTTCAATGTAAAA-----CAATGTAC---A-AATTGC-----T-------TAG----AGATTTT-T--------------AGCTA-----TAGAATACTGTT--CTGCCCCAAACATC--AAAAAAGAATTTTTTTTGAGAACTCATGTCGTTCAAAGATCC-AGT--ATTT-TCAGGAAAA--T----TGTGTCTTTTTGT---TTG-----AAAATCAAC-AAT-ACTGTCTGTTT-TCCTAACCCTTTG------------CCT------CTGT-A-----A--T---T-------------------T-GTAATTA
gi|9 : tga-TAA-ATTTA--ACTAGAAACCACCACCTTCC---TCTCGAATTAGGCAGATAGAGCAA---T---ATACAAAAGAAAGAACGTTATTGTAGTTTATGAAATTGTAATCATATTGGAC---AAGAATTTCATTAAATTTCAGAATGTATAG-----CATTGTGT---AGAATT---T---T-------TAA----Aa
Alignments
lowQualScore : 11111111111111111111111111111111111
lowQualScore : 1 2222 22222 1 1 3333333 11 22222 111 11 11 1 2222222222222 1 1 1 22 22222222222222222222222222222222222 2222 4444444444444444444 11 222222222 44444444444 111 11111 111 4444444444444 1111 3333333333333333 111111 22222222 2222222 1111 1 111111 555555555555555555555555555555555555 11111111
lowQualScore : 5 1 3333 77777 5 7 2 1 1 33 2222222 3 11 88 77777 111 33 77 2 0 1 0000000000000 1 7 0 3 3 1 0 2 0 3 88 1 3 3 66666666666666666666666666666666666 0 8888 1 0 5555555555555555555 0 7 1 8 8 1 00 0 555555555 3 55 77777777777 6 1 222 0 22222 0 1 333 5 3 1111111111111 0000 44 5555555555555555 333333 1 66 66 1 66666666 22 1 3 5 77 1 5 3333333 1 1 3 4 777 0000 77 4 3 4 7 0 777 222222 222222222222222222222222222222222222 88 66 77777777 9999 4
lowQualScore : . . .... ..... . . . . . .. ....... . .. .. ..... ... .. .. . . . ............. . . . . . . . . . . .. . . . ................................... . .... . . ................... . . . . . . .. . ......... . .. ........... . . ... . ..... . . ... . . ............. .... .. ................ ...... . .. .. . ........ .. . . . .. . . ....... . . . . ... .... .. . . . . . ... ...... .................................... .. .. ........ .... .
lowQualScore : 5 0 0000 00000 0 3 0 0 0 55 5555555 2 88 88 88888 888 22 00 5 0 0 8888888888888 0 3 7 7 3 0 7 0 7 3 00 0 7 7 00000000000000000000000000000000000 7 3333 0 7 3333333333333333333 7 3 2 0 0 0 88 8 888888888 8 66 22222222222 3 7 222 9 55555 8 0 888 0 4 1111111111111 6666 66 4444444444444444 888888 1 99 11 0 00000000 11 4 0 7 99 7 7 1111111 1 0 9 4 888 6666 11 4 7 4 8 4 888 888888 666666666666666666666666666666666666 99 55 66666666 4444 4
consensus : NATCTTTATCGGGNAAAGCTTGCGGTTCAACAGCAATCATTGGACAACAAATTGAGTAAGGTTGTTTACATNTATGTACNTAACATGCATG-------ATATGACAAAGAAAA-GTAACAG---AATCCATGGATTTCA-T-TTTG-AAAAGTA-TTTTAGACAAGT-GTGGNCTCTCGAACATTTGG-T-TGAGCATGNAACACGCAGTTTTAACGCTACGTGGATTAAA-TCAANTGCGAACCAAAGGCTATAAGATCGATT-TTACAAA-AATGACGNGANGATATAT-----------AAG--------TTGCA--------AACGAAT----TTTGAATGTGATNAATATTCGACATT--ACAAAGA-AA-TT----ACGAGAAAACTATGA-TAA-ATTTAGAACTACAAACCACCGCCTTCC---TCTCGAANTAGGCAGATGGAGTAA---T---G---AAAGGAATGAACGCTTTTGTACGTTATGCAACTGTAACCAAATTGGAG---ATGAATTTCATTATATTCTTGAATGTAAAG-----CATTGNGT---A-AATTGCGT---T-------TAG----AGATTTT-T----------T---AGATA-----TAGAATACTGTT--CTGCCCCAAACACC--AAAANAG-------TTTGTGAACTCATGTCTTCCAAAGATCC-TGT--ATCT-CTAAGAAAG--T---GTGTGTNTTTAT-T---TTGA----AAAATCAAC-AAT-ACTGTCTG-TT-TCCTGACTTTTCGTCTGTT---TGACCC------CTGT-A-----T--T---TA------------------T-GTAAATACGTTTC-ATGTAC-----CT-CATGTACCATTC----CATGGTTT-GAGTGTAATAAACT
Reference ( family-705 ) : NATCTTTATCGGGNAAAGCTTGCGGTTCAACAGCAATCATTGGACAACAAATTGAGTAAGGTTGTTTACATNTATGTACNTAACATGCATG-------ATATGACAAAGAAAA-GTAACAG---AATCCATGGATTTCA-T-TTTG-AAAAGTA-TTTTAGACAAGT-GTGGNCTCTCGAACATTTGG-T-TGAGCATGNAACACGCAGTTTTAACGCTACGTGGATTAAA-TCAANTGCGAACCAAAGGCTATAAGATCGATT-TTACAAANNATGANAGGAGGATATAT-----------AAG--------TTGCA--------AACGAAT----TTTGAATGTGATNAATATTCGACATT--ACAAAGA-AA-TT----ACGAGAAAACTATGA-TAA-ATTTAGAACTACAAACCACCGCCTTCC---TCTCGAANTAGGCAGATGGAGTAA---T---G---AAAGGAATGAACGCTTTTGTACGTTATGCAACTGTAACCAAATTGGAG---ATGAATTTCATTATATTCTTGAATGTAAAG-----CATTGNGT---A-AATTGCGT---T-------TAG----AGATTTT-T----------T---AGATA-----TAGAATACTGTT--CTGCCCCAAACACC--AAAANAG-------TTTGTGAACTCATGTCTTCCAAAGATCC-TGT--ATCT-CTAAGAAAG--T---GTGTGTNTTTAT-T---TTGA----AAAATCAAC-AAT-ACTGTCTG-TT-TCCTGACTTTTCGTCTGTT---TGACCC------CTGT-A-----T--T---TA------------------T-GTAAATACGTTTC-ATGTAC-----CT-CATGTACCATTC----CATGGTTT-GAGTGTAATAAACT
gi|1 : ATCTT-ATCGGGCAAAGCTTA----TCAACAGCAATCATTGGATAACAAACTTGGCAAGGTTATTTATATCTATGTACGTAACATACATGTACATAGATATGACAAAGAAAAAGTAACAATTAAATCCATAGATTTCA-T-TTCGGAAAAGTA-TGTTAGACAGGT-GTGAACTCTGGAACATTTGG-TATGAGCATGAAACACGCTGTTATAATGCTATGTGGATTAAG-TTAACTGCGAACCAAAGGCTATAAGATCAATTATTACAAATTATAAAAAAAAAATAAAT-----------AAA--------TT--A--------AACAAAT----TTTGACTGTGAGAAATACTTGACATT--ACAAAGA-AAGTT----ACGAGAAATCTTTAT-TAAGATATAGAACTACAAACT-TTGACTTCC----CT-----------------GTGA-----------AAACGAATGAACGCTTTTGTATGTTTTGTAACTGTAACCAAATTGGAA---ACGAAT---------TTCTGGAATGTAAAG-----CATTGAGC---A-AATTACATACATGTACCGGTAG----GTGTTTT-T----------TTTAAAATA-----CAAAGTAGTGTT--CTGCCCCAAACACC--AAAAGAAT------TTTGTGAATTCATGTCTTCTAAAGATTC-CGT--ATCT-CTAAAAAAA--T---ATGTATGTTTAT-T---TTGA----AAAATCAAT-AAT-ATTGTCTG-TT---CTGATTTTTCGTCTGTT---T-----------CTGT-A-----T--T---TA------------------T-GTAAATATTTTCC-ATGTAC-----CTCCACGTACCA-CC----CATGGCCC-GAGTGAAATAAACT
gi|10 : tAGAAATAAACGCTTCTGTACGTTATGCCACTGTAACCAAATTGGTG---ATGAATTTCATTTTATTCTTGAATGTAAAG-----GAAAGGATAACA-AACAGCGA---T-------CAGTCTCAGACTTTGTGTAAATTGCGT---AGAGATTGTTTAGAATATTGTT--CTGCTCCAAACACC--AAA
gi|11 : CCAAACACTGTAAAAAA----------TATGAATTTA-GTCCTCCATAAATTC-TGT--ATAA-TTAAGAAAG--TCACATGTATGTTTGT-TCATTTCA----AAAACAAAT-AATTGCTGTCTG-TT-TGC---CTTTTC-TCTGTT---TGAC-------------A-----C--T---TA----------------------AAATATGTAACTATATAC---------ATGTACCACTC----CACTGTCT-CAGTGtaatancagtctcagactttgtg
gi|12 : TA-----AAGAATACTGTTATTTCCCCCAAACACT--AAAATAG-------TT-GTGA-------TCTT------ATCTGTGT--ATCTGCTAAGAAAAGCT---GTGTATGTTTAT-T---TTGA----AAAATCAATGAAT-AATGCCTG-TT-CTCTGATGTTTTATTTG-T---TGATCC------TTGT-
gi|13 : ATCAAC-AGT-ATTGTCTG-TTCTCCTAACGCTTTGTCTGTT---TGACCC------CTGT-AATTTGTAAT---TA------------------T-GTAAATACGTT-----------------CATGTACCATTC----CATGGTTT-GAGTGTACTAAtaaatcttcttatatgta
gi|14 : ttgaactggacaaaacaagtAAACAAATGGGAG---ATGAATTTCATTATATTCTTGAATGTAAGA-----CATAGGGT---A-AAATGCA------------TAG----AGATTTT-T----------T---AGATG-----TAGAATATTGTT--CTGCTCCAAACACC--tatgaactgaactgttctcct
gi|15 : tttgcactgaaagTATTTAT-T---TT-A----AAAATTAA--------TGTATG-TTCTCCTGATTTATCGTCTGTTTCATGACCCCTGTTACTGT-A-----T--G---TA------------------T-GTAAATAT-TTTC-ATGTGC-----C
gi|16 : tgaGTCTGTT---TGACCC------CTGT-AAT---T--TGCATA------------------T-GTAAATATGTTTC-ATGTAC-----CT-CATGTACCATTC----CCTGGTTT-GATTGTAATAAACTattc
gi|17 : tTTTTCATCTGTT---TGACCC------CTGT--------------TA------------------CCGTA--TA--TTT---TGTAC-----CT-CATGTACCATTC----CATGATTTCGAGTGgaa
gi|18 : TGT-A-----T--A---TA------------------T-TGAAATAC-TTT--------------T-CATGTACCATTC----CATGGTTT-GAGTGTAATAAACTaa
gi|19 : ga-GTATATACGTTTC-GCACACTAATACC-CATGTACCATTC----TATGATTT-GAGTGAAATAAAgaaa
gi|2 : ATCTTTATTGGGGAAAGCTTGCGGTTCAATAACA-----TG-ACAACAAATTGAATAAGGTTGTTTACATGTATGTATTTAACATGCATG-------ATAT----AGGAAAA-GTAAGA----AATCCATGAATTTCA-TGTTTG--AAAGTA--TTTAGACAAGTGGTGGCCTCTCAAA--------------CATGTAACACGCAGTTTT-ATGCAACGTATTTTAAAGTCAAGTGTTAA-CAAAGGCTATGAGATCAATT-TTACAAA-AATGACAGGAGGATATATCTACGGCTTCAAAGGGTGTAATTTACAGAATGTTCAACAAACAGAATTTGAATGTGATTAATATTCCACATT-----------A-TT----ACAAG-AAGTTACGA-AAG-ATTT-GAACTACAAACCATCACCTTAC---TGTTGAATTAGGCAGATG----AA---T---A---AAAGG-ATGAACGCTTTTGTATATTATGCAACTGTAACCAAATTGGAGT--ATGAATTTCATTATATTCTTGAATGTAAAG-----CATAGTGCA--A-AATTACG----T-------CAG----A----TT-T----------T---AACTA-----AAGAATACTGCT--AT-TCCCAAACACT---AAATAG-------TTTGTGATCTTATGCCTTCTAAA-ATTC-TGT--ATCT-CTAAGAAAGC-T---GCGCATGCTTAT-T---TTGA----AAATCCAAT-AAT-ACTGTCTG-TT-
gi|20 : agatatcctttgtatatgacaatttttacagaatg-GTGAATAAGTTTC-ATGTAC-----AG-CATGTACCATTCTATATATGGTTT-GAGTGTAATAAat
gi|21 : AAAAAG--TT--GTTTCTTTTTAT-T---ATGA----AAA-TCAAC-AAT-ATTGTCTG-TTATCC
gi|3 : ACTTAGCA--AATT-------ATATGACAGGGAAAA--TAATAG---AGTG-ATGACTTTCA-T-TTTG-AAAAGTAGTTTTA-ATAAAT-GTGGCCTCTC-----TTTGAAT-TGAGCATAGAACACGGAATTTTAACTCTAAATGGAATAAA-ACAATTGTGAATCAAAGACTACAAGATCGGTT-TTACAAA-AATGGCGTGATGGTATaag
gi|3 : atgcttcacagtgaaacttgatgatatcctttaaatgtaacaattttttactagaaggtctcttattgggcacaacgtgtcaacggcaatgataactaAATTATGACTTA-ATTTAGAACCACTAATCACCATCTTCCAGATCT---AGTAGGCAGATGGAATAA---CACGG---AAAGGAATAAACACTTCTGTATGTTATGCAACCGTAATCAAGTTGGAG---ATGAATGTTATTATTTTCTTGtgctaattatgacttaatttagaaccactaatcaccatcttccagatctagtaggcagatggaataacacggaaaggaataaacacttctgtatgttatgcaaccgtaatcaagttggagatgaatgttattattttcttg
gi|4 : atgcttcacagtgaaacttgatgatatcctttaaatgtaacaattttttactagaaggtctcttattgggcacaacgtgtcaacggcaatgataactaacttagcaaattatatgacagggaaaataatagagtgatgactttcattttgaaaagtagttttaataaatgtggcctctctttgaattgagcatagaacacggaattttaactctaaatggaataaaacaattgtgaatcaaagactacaagatcggttttacaaaaatggcgtgatggtattgctAACAAAT-GAGTAAGGTT-TTTGCATACATGTACATAACATGCATG-------A-----CAAAGAGA--GCAAC-G---AATCCATGGATTTCAGT-TTTG-AAAAGTA-CTTTAGACAAGT-ACGGATTGTCAAACATTTGG-T-
gi|4 : atggtctgcggtaaaacgggaagaaatcctttgtatataacaagttttacaagaatgatctcttattggcaaagtttAGAAGA-GCAAC-G---AATCCATGGATTTCA-G-TTTaccagnnnnnnnnnnnnnnnnnnnnnnnagaagagcaacgaatccatggatttcagtttatttttatttttttttacaaaaaaggcacgaagatatatcta
gi|5 : atggtctgcggtaaaacgggaagaaatcctttgtatataacaagttttacaagaatgatctcttattggcaaagtttaacaaatgagtaaggtttttgcatacatgtacataacatgcatgacaaagagagcaacgaatccatggatttcagttttgaaaagtactttagacaagtacggattgtcaaacatttggtaccagnnnnnnnnnnnnnnnnnnnnnnn-----CATTGCAT---A-CAGTCCGT------------AG----AGATTTT-T----------T---ACATA-----CAGAATATTATT--CTGTCCCAAACACC--AAAACAG-------TTTGTGAATTCATGTCTTCCAAAGATCC-TGTAGATTT-TTAAGATAT--T---G-GTGCCTTT-T-T---TTGAATTGAAAATCAGC-AAC-AGTATCTG-TTCTCCTAACTCTTTGTTTGTT---TGACCC------CTGTAA-----T--T---TGTAATTAGCAATGTATATTT-GTAAATACGTTTC-ATATAC-----CT-CATGTGCCATTC----CATGGTTT-GAGTGTAATAAACTatttttatttttttttacaaaaaaggcacgaagatatatcta
gi|6 : aTATAT-----------AAG--------TTGTA--------TACGAAT----TTTGAATGTGATGAATATTTGACATTTGACAAAGACAA-TTTAAAAGAAAAAAACTATGA-TAA-ATGCA-AACTACAAGACACCGCTTTCT---CTTCCAAGTAGGCAGGTGGAGTGACATT---G---AAGGAAATGAAAGCGATTATAGATTATGTATTTGGAAGCAGATTGAAGATCATGAATTTTATAGTATTCgaa
gi|7 : atttctcaaaagtggctcgataatatttctgagttatcaagggtagtggctAG---ATGA-TTTCGTTCTGAGCTTAAGTCTAAAGTAAGACATTGTGT---A-AATTGCCT---T-------TAG----ATTTTTTTT----------T---AGATA-----TAGAATATTGTT--CTGCTCCAAACACC--AAAAAAA-------TGTGTGAACTCATGTCTTCCAAAGATCT-TGT--A-GT-TTAAGAAAG--T----TGTGTCTTTTT-G---TTG
gi|8 : ttatctttccactgaattaagaaatacaaaatgccttcttttcattatgtaatagtcggtgataatttagactatcaGAG---ATTAATTTCATTATATTCTTCAATGTAAAA-----CAATGTAC---A-AATTGC-----T-------TAG----AGATTTT-T--------------AGCTA-----TAGAATACTGTT--CTGCCCCAAACATC--AAAAAAGAATTTTTTTTGAGAACTCATGTCGTTCAAAGATCC-AGT--ATTT-TCAGGAAAA--T----TGTGTCTTTTTGT---TTG-----AAAATCAAC-AAT-ACTGTCTGTTT-TCCTAACCCTTTG------------CCT------CTGT-A-----A--T---T-------------------T-GTAATTA
gi|9 : tga-TAA-ATTTA--ACTAGAAACCACCACCTTCC---TCTCGAATTAGGCAGATAGAGCAA---T---ATACAAAAGAAAGAACGTTATTGTAGTTTATGAAATTGTAATCATATTGGAC---AAGAATTTCATTAAATTTCAGAATGTATAG-----CATTGTGT---AGAATT---T---T-------TAA----Aa
Alignments
lowQualScore : 11111111111111111111111111111111111
lowQualScore : 1 2222 22222 1 1 3333333 11 111 222222 111 11 11 1 333333333333333 11 1 1 2222222222222222 1 11111111111111111111111111111111111 2222 4444444444444444444 11 222222222 44444444444 111 11111 111 4444444444444 1111 3333333333333333 111111 22222222 2222222 1111 1 111111 555555555555555555555555555555555555 11111111
lowQualScore : 5 1 3333 77777 5 7 2 1 1 33 2222222 3 11 555 777777 2 111 33 77 2 0 1 222222222222222 2 444 5 0 3 9 33 0 0 0 9999999999999999 0 33 1 00000000000000000000000000000000000 0 8888 1 0 5555555555555555555 0 7 1 8 8 1 00 0 555555555 3 55 77777777777 6 1 222 0 22222 0 1 333 5 3 1111111111111 0000 44 5555555555555555 333333 1 66 66 1 66666666 22 1 3 5 77 1 5 3333333 1 1 3 4 777 0000 77 4 3 4 7 0 777 222222 222222222222222222222222222222222222 88 66 77777777 9999 4
lowQualScore : . . .... ..... . . . . . .. ....... . .. ... ...... . ... .. .. . . . ............... . ... . . . . .. . . . ................ . .. . ................................... . .... . . ................... . . . . . . .. . ......... . .. ........... . . ... . ..... . . ... . . ............. .... .. ................ ...... . .. .. . ........ .. . . . .. . . ....... . . . . ... .... .. . . . . . ... ...... .................................... .. .. ........ .... .
lowQualScore : 5 0 0000 00000 0 3 0 0 0 55 5555555 2 88 888 555555 5 000 22 00 5 0 0 555555555555555 5 555 8 8 0 8 55 8 5 8 8888888888888888 0 00 0 22222222222222222222222222222222222 7 3333 0 7 3333333333333333333 7 3 2 0 0 0 88 8 888888888 8 66 22222222222 3 7 222 9 55555 8 0 888 0 4 1111111111111 6666 66 4444444444444444 888888 1 99 11 0 00000000 11 4 0 7 99 7 7 1111111 1 0 9 4 888 6666 11 4 7 4 8 4 888 888888 666666666666666666666666666666666666 99 55 66666666 4444 4
consensus : NATCTTTATCGGGNAAAGCTTGCGGTTCAACAGCAATCATTGGACAACAAATTGAGTAAGGTTGTTTACATNTATGTACNTAACATGCATG-------ATATGACAAGGAAAA-GTAACAG---AATCCATGGATTTCA-T-TTTG-AAAAGTA-TTTTAGACAAGT-GTGGNCTCTCGAACATTTGG-T-TGAGCATGGAACACGCAGTTTTAACGCTACGTGGATTAAA-NCAANTGCGAATCAAAGGCTATAAGATCA-----ATT-T-----TACAAA-AATGGCANGAAGATATAT-----------AAG--------TTGCA--------AACGAAT----TTTGAATGTGATNAATATTCGACATT--ACAAAGA-AA-TT----ACGAGAAAACTATGA-TAA-ATTTAGAACTACAAACCACCGCCTTCC---TCTCGAANTAGGCAGATGGAGTAA---T---G---AAAGGAATGAACGCTTTTGTACGTTATGCAACTGTAACCAAATTGGAG---ATGAATTTCATTATATTCTTGAATGTAAAG-----CATTGNGT---A-AATTGCGT---T-------TAG----AGATTTT-T----------T---AGATA-----TAGAATACTGTT--CTGCCCCAAACACC--AAAANAG-------TTTGTGAACTCATGTCTTCCAAAGATCC-TGT--ATCT-CTAAGAAAG--T---GTGTGTNTTTAT-T---TTGA----AAAATCAAC-AAT-ACTGTCTG-TT-TCCTGACTTTTCGTCTGTT---TGACCC------CTGT-A-----T--T---TA------------------T-GTAAATACGTTTC-ATGTAC-----CT-CATGTACCATTC----CATGGTTT-GAGTGTAATAAACT
Reference ( family-705 ) : NATCTTTATCGGGNAAAGCTTGCGGTTCAACAGCAATCATTGGACAACAAATTGAGTAAGGTTGTTTACATNTATGTACNTAACATGCATG-------ATATGACAAAGAAAA-GTAACAG---AATCCATGGATTTCA-T-TTTG-AAAAGTA-TTTTAGACAAGT-GTGGNCTCTCGAACATTTGG-T-TGAGCATGNAACACGCAGTTTTAACGCTACGTGGATTAAA-TCAANTGCGAACCAAAGGCTATAAGATCG-----ATT-T-----TACAAA-AATGACGNGANGATATAT-----------AAG--------TTGCA--------AACGAAT----TTTGAATGTGATNAATATTCGACATT--ACAAAGA-AA-TT----ACGAGAAAACTATGA-TAA-ATTTAGAACTACAAACCACCGCCTTCC---TCTCGAANTAGGCAGATGGAGTAA---T---G---AAAGGAATGAACGCTTTTGTACGTTATGCAACTGTAACCAAATTGGAG---ATGAATTTCATTATATTCTTGAATGTAAAG-----CATTGNGT---A-AATTGCGT---T-------TAG----AGATTTT-T----------T---AGATA-----TAGAATACTGTT--CTGCCCCAAACACC--AAAANAG-------TTTGTGAACTCATGTCTTCCAAAGATCC-TGT--ATCT-CTAAGAAAG--T---GTGTGTNTTTAT-T---TTGA----AAAATCAAC-AAT-ACTGTCTG-TT-TCCTGACTTTTCGTCTGTT---TGACCC------CTGT-A-----T--T---TA------------------T-GTAAATACGTTTC-ATGTAC-----CT-CATGTACCATTC----CATGGTTT-GAGTGTAATAAACT
gi|1 : ATCTT-ATCGGGCAAAGCTTA----TCAACAGCAATCATTGGATAACAAACTTGGCAAGGTTATTTATATCTATGTACGTAACATACATGTACATAGATATGACAAAGAAAAAGTAACAATTAAATCCATAGATTTCA-T-TTCGGAAAAGTA-TGTTAGACAGGT-GTGAACTCTGGAACATTTGG-TATGAGCATGAAACACGCTGTTATAATGCTATGTGGATTAAG-TTAACTGCGAACCAAAGGCTATAAGATCA-----ATTAT-----TACAAATTATAAAAAAAAAATAAAT-----------AAA--------TT--A--------AACAAAT----TTTGACTGTGAGAAATACTTGACATT--ACAAAGA-AAGTT----ACGAGAAATCTTTAT-TAAGATATAGAACTACAAACT-TTGACTTCC----CT-----------------GTGA-----------AAACGAATGAACGCTTTTGTATGTTTTGTAACTGTAACCAAATTGGAA---ACGAAT---------TTCTGGAATGTAAAG-----CATTGAGC---A-AATTACATACATGTACCGGTAG----GTGTTTT-T----------TTTAAAATA-----CAAAGTAGTGTT--CTGCCCCAAACACC--AAAAGAAT------TTTGTGAATTCATGTCTTCTAAAGATTC-CGT--ATCT-CTAAAAAAA--T---ATGTATGTTTAT-T---TTGA----AAAATCAAT-AAT-ATTGTCTG-TT---CTGATTTTTCGTCTGTT---T-----------CTGT-A-----T--T---TA------------------T-GTAAATATTTTCC-ATGTAC-----CTCCACGTACCA-CC----CATGGCCC-GAGTGAAATAAACT
gi|10 : tAGAAATAAACGCTTCTGTACGTTATGCCACTGTAACCAAATTGGTG---ATGAATTTCATTTTATTCTTGAATGTAAAG-----GAAAGGATAACA-AACAGCGA---T-------CAGTCTCAGACTTTGTGTAAATTGCGT---AGAGATTGTTTAGAATATTGTT--CTGCTCCAAACACC--AAA
gi|11 : CCAAACACTGTAAAAAA----------TATGAATTTA-GTCCTCCATAAATTC-TGT--ATAA-TTAAGAAAG--TCACATGTATGTTTGT-TCATTTCA----AAAACAAAT-AATTGCTGTCTG-TT-TGC---CTTTTC-TCTGTT---TGAC-------------A-----C--T---TA----------------------AAATATGTAACTATATAC---------ATGTACCACTC----CACTGTCT-CAGTGtaatancagtctcagactttgtg
gi|12 : TA-----AAGAATACTGTTATTTCCCCCAAACACT--AAAATAG-------TT-GTGA-------TCTT------ATCTGTGT--ATCTGCTAAGAAAAGCT---GTGTATGTTTAT-T---TTGA----AAAATCAATGAAT-AATGCCTG-TT-CTCTGATGTTTTATTTG-T---TGATCC------TTGT-
gi|13 : ATCAAC-AGT-ATTGTCTG-TTCTCCTAACGCTTTGTCTGTT---TGACCC------CTGT-AATTTGTAAT---TA------------------T-GTAAATACGTT-----------------CATGTACCATTC----CATGGTTT-GAGTGTACTAAtaaatcttcttatatgta
gi|14 : ttgaactggacaaaacaagtAAACAAATGGGAG---ATGAATTTCATTATATTCTTGAATGTAAGA-----CATAGGGT---A-AAATGCA------------TAG----AGATTTT-T----------T---AGATG-----TAGAATATTGTT--CTGCTCCAAACACC--tatgaactgaactgttctcct
gi|15 : tttgcactgaaagTATTTAT-T---TT-A----AAAATTAA--------TGTATG-TTCTCCTGATTTATCGTCTGTTTCATGACCCCTGTTACTGT-A-----T--G---TA------------------T-GTAAATAT-TTTC-ATGTGC-----C
gi|16 : tgaGTCTGTT---TGACCC------CTGT-AAT---T--TGCATA------------------T-GTAAATATGTTTC-ATGTAC-----CT-CATGTACCATTC----CCTGGTTT-GATTGTAATAAACTattc
gi|17 : tTTTTCATCTGTT---TGACCC------CTGT--------------TA------------------CCGTA--TA--TTT---TGTAC-----CT-CATGTACCATTC----CATGATTTCGAGTGgaa
gi|18 : TGT-A-----T--A---TA------------------T-TGAAATAC-TTT--------------T-CATGTACCATTC----CATGGTTT-GAGTGTAATAAACTaa
gi|19 : ga-GTATATACGTTTC-GCACACTAATACC-CATGTACCATTC----TATGATTT-GAGTGAAATAAAgaaa
gi|2 : ATCTTTATTGGGGAAAGCTTGCGGTTCAATAACA-----TG-ACAACAAATTGAATAAGGTTGTTTACATGTATGTATTTAACATGCATG-------ATAT----AGGAAAA-GTAAGA----AATCCATGAATTTCA-TGTTTG--AAAGTA--TTTAGACAAGTGGTGGCCTCTCAAA--------------CATGTAACACGCAGTTTT-ATGCAACGTATTTTAAAGTCAAGTGTTAA-CAAAGGCTATGAGATCA-----ATT-T-----TACAAA-AATGACAGGAGGATATATCTACGGCTTCAAAGGGTGTAATTTACAGAATGTTCAACAAACAGAATTTGAATGTGATTAATATTCCACATT-----------A-TT----ACAAG-AAGTTACGA-AAG-ATTT-GAACTACAAACCATCACCTTAC---TGTTGAATTAGGCAGATG----AA---T---A---AAAGG-ATGAACGCTTTTGTATATTATGCAACTGTAACCAAATTGGAGT--ATGAATTTCATTATATTCTTGAATGTAAAG-----CATAGTGCA--A-AATTACG----T-------CAG----A----TT-T----------T---AACTA-----AAGAATACTGCT--AT-TCCCAAACACT---AAATAG-------TTTGTGATCTTATGCCTTCTAAA-ATTC-TGT--ATCT-CTAAGAAAGC-T---GCGCATGCTTAT-T---TTGA----AAATCCAAT-AAT-ACTGTCTG-TT-
gi|20 : agatatcctttgtatatgacaatttttacagaatg-GTGAATAAGTTTC-ATGTAC-----AG-CATGTACCATTCTATATATGGTTT-GAGTGTAATAAat
gi|21 : AAAAAG--TT--GTTTCTTTTTAT-T---ATGA----AAA-TCAAC-AAT-ATTGTCTG-TTATCC
gi|3 : ACTTAGCA--AATT-------ATATGACAGGGAAAA--TAATAG---AGTG-ATGACTTTCA-T-TTTG-AAAAGTAGTTTTA-ATAAAT-GTGGCCTCTC-----TTTGAAT-TGAGCATAGAACACGGAATTTTAACTCTAAATGGAATAAA-ACAATTGTGAATCAAAGACTACAAGATCG-----GTT-T-----TACAAA-AATGGCGTGATGGTATaag
gi|3 : atgcttcacagtgaaacttgatgatatcctttaaatgtaacaattttttactagaaggtctcttattgggcacaacgtgtcaacggcaatgataactaAATTATGACTTA-ATTTAGAACCACTAATCACCATCTTCCAGATCT---AGTAGGCAGATGGAATAA---CACGG---AAAGGAATAAACACTTCTGTATGTTATGCAACCGTAATCAAGTTGGAG---ATGAATGTTATTATTTTCTTGtgctaattatgacttaatttagaaccactaatcaccatcttccagatctagtaggcagatggaataacacggaaaggaataaacacttctgtatgttatgcaaccgtaatcaagttggagatgaatgttattattttcttg
gi|4 : atgcttcacagtgaaacttgatgatatcctttaaatgtaacaattttttactagaaggtctcttattgggcacaacgtgtcaacggcaatgataactaacttagcaaattatatgacagggaaaataatagagtgatgactttcattttgaaaagtagttttaataaatgtggcctctctttgaattgagcatagaacacggaattttaactctaaatggaataaaacaattgtgaatcaaagactacaagatcggttttacaaaaatggcgtgatggtattgctAACAAAT-GAGTAAGGTT-TTTGCATACATGTACATAACATGCATG-------A-----CAAAGAGA--GCAAC-G---AATCCATGGATTTCAGT-TTTG-AAAAGTA-CTTTAGACAAGT-ACGGATTGTCAAACATTTGG-T---ACCA--GNNNNNNNNNNNNNNNNNNNNNNNAGA--AGA-GCAA---CGAATCCATGGATTTCAGTTTATTTTTATT-TTTTTTTACAAA-AAAGGCACGAAGATATAT-----------
gi|5 : atggtctgcggtaaaacgggaagaaatcctttgtatataacaagttttacaagaatgatctcttattggcaaagttt-----CATTGCAT---A-CAGTCCGT------------AG----AGATTTT-T----------T---ACATA-----CAGAATATTATT--CTGTCCCAAACACC--AAAACAG-------TTTGTGAATTCATGTCTTCCAAAGATCC-TGTAGATTT-TTAAGATAT--T---G-GTGCCTTT-T-T---TTGAATTGAAAATCAGC-AAC-AGTATCTG-TTCTCCTAACTCTTTGTTTGTT---TGACCC------CTGTAA-----T--T---TGTAATTAGCAATGTATATTT-GTAAATACGTTTC-ATATAC-----CT-CATGTGCCATTC----CATGGTTT-GAGTGTAATAAACTcta
gi|6 : aTATAT-----------AAG--------TTGTA--------TACGAAT----TTTGAATGTGATGAATATTTGACATTTGACAAAGACAA-TTTAAAAGAAAAAAACTATGA-TAA-ATGCA-AACTACAAGACACCGCTTTCT---CTTCCAAGTAGGCAGGTGGAGTGACATT---G---AAGGAAATGAAAGCGATTATAGATTATGTATTTGGAAGCAGATTGAAGATCATGAATTTTATAGTATTCgaa
gi|7 : atttctcaaaagtggctcgataatatttctgagttatcaagggtagtggctAG---ATGA-TTTCGTTCTGAGCTTAAGTCTAAAGTAAGACATTGTGT---A-AATTGCCT---T-------TAG----ATTTTTTTT----------T---AGATA-----TAGAATATTGTT--CTGCTCCAAACACC--AAAAAAA-------TGTGTGAACTCATGTCTTCCAAAGATCT-TGT--A-GT-TTAAGAAAG--T----TGTGTCTTTTT-G---TTG
gi|8 : ttatctttccactgaattaagaaatacaaaatgccttcttttcattatgtaatagtcggtgataatttagactatcaGAG---ATTAATTTCATTATATTCTTCAATGTAAAA-----CAATGTAC---A-AATTGC-----T-------TAG----AGATTTT-T--------------AGCTA-----TAGAATACTGTT--CTGCCCCAAACATC--AAAAAAGAATTTTTTTTGAGAACTCATGTCGTTCAAAGATCC-AGT--ATTT-TCAGGAAAA--T----TGTGTCTTTTTGT---TTG-----AAAATCAAC-AAT-ACTGTCTGTTT-TCCTAACCCTTTG------------CCT------CTGT-A-----A--T---T-------------------T-GTAATTA
gi|9 : tga-TAA-ATTTA--ACTAGAAACCACCACCTTCC---TCTCGAATTAGGCAGATAGAGCAA---T---ATACAAAAGAAAGAACGTTATTGTAGTTTATGAAATTGTAATCATATTGGAC---AAGAATTTCATTAAATTTCAGAATGTATAG-----CATTGTGT---AGAATT---T---T-------TAA----Aa
Alignments
lowQualScore : 11111111111111111111111111111111111
lowQualScore : 1 2222 22222 1 1 3333333 11 111 222222 111 11 11 1 1 333333333333 11 1 44444444444 1 1 11111111111111111111111111111111111 2222 4444444444444444444 11 222222222 44444444444 111 11111 111 4444444444444 1111 3333333333333333 111111 22222222 2222222 1111 1 111111 555555555555555555555555555555555555 11111111
lowQualScore : 5 1 3333 77777 5 7 2 1 1 33 2222222 3 11 555 777777 2 111 33 77 2 0 1 0 3 777777777777 5 0 3 9 11 0 7 0 44444444444 0 0 1 1 00000000000000000000000000000000000 0 8888 1 0 5555555555555555555 0 7 1 8 8 1 00 0 555555555 3 55 77777777777 6 1 222 0 22222 0 1 333 5 3 1111111111111 0000 44 5555555555555555 333333 1 66 66 1 66666666 22 1 3 5 77 1 5 3333333 1 1 3 4 777 0000 77 4 3 4 7 0 777 222222 222222222222222222222222222222222222 88 66 77777777 9999 4
lowQualScore : . . .... ..... . . . . . .. ....... . .. ... ...... . ... .. .. . . . . . ............ . . . . .. . . . ........... . . . . ................................... . .... . . ................... . . . . . . .. . ......... . .. ........... . . ... . ..... . . ... . . ............. .... .. ................ ...... . .. .. . ........ .. . . . .. . . ....... . . . . ... .... .. . . . . . ... ...... .................................... .. .. ........ .... .
lowQualScore : 5 0 0000 00000 0 3 0 0 0 55 5555555 2 88 888 555555 5 000 22 00 5 0 0 5 2 888888888888 8 8 0 8 00 8 0 8 88888888888 0 0 0 2 22222222222222222222222222222222222 7 3333 0 7 3333333333333333333 7 3 2 0 0 0 88 8 888888888 8 66 22222222222 3 7 222 9 55555 8 0 888 0 4 1111111111111 6666 66 4444444444444444 888888 1 99 11 0 00000000 11 4 0 7 99 7 7 1111111 1 0 9 4 888 6666 11 4 7 4 8 4 888 888888 666666666666666666666666666666666666 99 55 66666666 4444 4
consensus : NATCTTTATCGGGNAAAGCTTGCGGTTCAACAGCAATCATTGGACAACAAATTGAGTAAGGTTGTTTACATNTATGTACNTAACATGCATG-------ATATGACAAGGAAAA-GTAACAG---AATCCATGGATTTCA-T-TTTG-AAAAGTA-TTTTAGACAAGT-GTGGNCTCTCGAACATTTGG-T-TGAGCATGGAACACGCAGTTTTAACGCTACGTGGATTAAA-NCAANTGCGAATCAAAGGCTATAAGATCA-----A-----TT-TTACAAA-AATGGCANGAAGATATAT-----------AAG--------TTGCA--------AACGAAT----TTTGAATGTGATNAATATTCGACATT--ACAAAGA-AA-TT----ACGAGAAAACTATGA-TAA-ATTTAGAACTACAAACCACCGCCTTCC---TCTCGAANTAGGCAGATGGAGTAA---T---G---AAAGGAATGAACGCTTTTGTACGTTATGCAACTGTAACCAAATTGGAG---ATGAATTTCATTATATTCTTGAATGTAAAG-----CATTGNGT---A-AATTGCGT---T-------TAG----AGATTTT-T----------T---AGATA-----TAGAATACTGTT--CTGCCCCAAACACC--AAAANAG-------TTTGTGAACTCATGTCTTCCAAAGATCC-TGT--ATCT-CTAAGAAAG--T---GTGTGTNTTTAT-T---TTGA----AAAATCAAC-AAT-ACTGTCTG-TT-TCCTGACTTTTCGTCTGTT---TGACCC------CTGT-A-----T--T---TA------------------T-GTAAATACGTTTC-ATGTAC-----CT-CATGTACCATTC----CATGGTTT-GAGTGTAATAAACT
Reference ( family-705 ) : NATCTTTATCGGGNAAAGCTTGCGGTTCAACAGCAATCATTGGACAACAAATTGAGTAAGGTTGTTTACATNTATGTACNTAACATGCATG-------ATATGACAAGGAAAA-GTAACAG---AATCCATGGATTTCA-T-TTTG-AAAAGTA-TTTTAGACAAGT-GTGGNCTCTCGAACATTTGG-T-TGAGCATGGAACACGCAGTTTTAACGCTACGTGGATTAAA-NCAANTGCGAATCAAAGGCTATAAGATCA-----A-----TT-TTACAAA-AATGGCANGAAGATATAT-----------AAG--------TTGCA--------AACGAAT----TTTGAATGTGATNAATATTCGACATT--ACAAAGA-AA-TT----ACGAGAAAACTATGA-TAA-ATTTAGAACTACAAACCACCGCCTTCC---TCTCGAANTAGGCAGATGGAGTAA---T---G---AAAGGAATGAACGCTTTTGTACGTTATGCAACTGTAACCAAATTGGAG---ATGAATTTCATTATATTCTTGAATGTAAAG-----CATTGNGT---A-AATTGCGT---T-------TAG----AGATTTT-T----------T---AGATA-----TAGAATACTGTT--CTGCCCCAAACACC--AAAANAG-------TTTGTGAACTCATGTCTTCCAAAGATCC-TGT--ATCT-CTAAGAAAG--T---GTGTGTNTTTAT-T---TTGA----AAAATCAAC-AAT-ACTGTCTG-TT-TCCTGACTTTTCGTCTGTT---TGACCC------CTGT-A-----T--T---TA------------------T-GTAAATACGTTTC-ATGTAC-----CT-CATGTACCATTC----CATGGTTT-GAGTGTAATAAACT
gi|1 : ATCTT-ATCGGGCAAAGCTTA----TCAACAGCAATCATTGGATAACAAACTTGGCAAGGTTATTTATATCTATGTACGTAACATACATGTACATAGATATGACAAAGAAAAAGTAACAATTAAATCCATAGATTTCA-T-TTCGGAAAAGTA-TGTTAGACAGGT-GTGAACTCTGGAACATTTGG-TATGAGCATGAAACACGCTGTTATAATGCTATGTGGATTAAG-TTAACTGCGAACCAAAGGCTATAAGATCA-----A-----TTATTACAAATTATAAAAAAAAAATAAAT-----------AAA--------TT--A--------AACAAAT----TTTGACTGTGAGAAATACTTGACATT--ACAAAGA-AAGTT----ACGAGAAATCTTTAT-TAAGATATAGAACTACAAACT-TTGACTTCC----CT-----------------GTGA-----------AAACGAATGAACGCTTTTGTATGTTTTGTAACTGTAACCAAATTGGAA---ACGAAT---------TTCTGGAATGTAAAG-----CATTGAGC---A-AATTACATACATGTACCGGTAG----GTGTTTT-T----------TTTAAAATA-----CAAAGTAGTGTT--CTGCCCCAAACACC--AAAAGAAT------TTTGTGAATTCATGTCTTCTAAAGATTC-CGT--ATCT-CTAAAAAAA--T---ATGTATGTTTAT-T---TTGA----AAAATCAAT-AAT-ATTGTCTG-TT---CTGATTTTTCGTCTGTT---T-----------CTGT-A-----T--T---TA------------------T-GTAAATATTTTCC-ATGTAC-----CTCCACGTACCA-CC----CATGGCCC-GAGTGAAATAAACT
gi|10 : tAGAAATAAACGCTTCTGTACGTTATGCCACTGTAACCAAATTGGTG---ATGAATTTCATTTTATTCTTGAATGTAAAG-----GAAAGGATAACA-AACAGCGA---T-------CAGTCTCAGACTTTGTGTAAATTGCGT---AGAGATTGTTTAGAATATTGTT--CTGCTCCAAACACC--AAA
gi|11 : CCAAACACTGTAAAAAA----------TATGAATTTA-GTCCTCCATAAATTC-TGT--ATAA-TTAAGAAAG--TCACATGTATGTTTGT-TCATTTCA----AAAACAAAT-AATTGCTGTCTG-TT-TGC---CTTTTC-TCTGTT---TGAC-------------A-----C--T---TA----------------------AAATATGTAACTATATAC---------ATGTACCACTC----CACTGTCT-CAGTGtaatancagtctcagactttgtg
gi|12 : TA-----AAGAATACTGTTATTTCCCCCAAACACT--AAAATAG-------TT-GTGA-------TCTT------ATCTGTGT--ATCTGCTAAGAAAAGCT---GTGTATGTTTAT-T---TTGA----AAAATCAATGAAT-AATGCCTG-TT-CTCTGATGTTTTATTTG-T---TGATCC------TTGT-
gi|13 : ATCAAC-AGT-ATTGTCTG-TTCTCCTAACGCTTTGTCTGTT---TGACCC------CTGT-AATTTGTAAT---TA------------------T-GTAAATACGTT-----------------CATGTACCATTC----CATGGTTT-GAGTGTACTAAtaaatcttcttatatgta
gi|14 : ttgaactggacaaaacaagtAAACAAATGGGAG---ATGAATTTCATTATATTCTTGAATGTAAGA-----CATAGGGT---A-AAATGCA------------TAG----AGATTTT-T----------T---AGATG-----TAGAATATTGTT--CTGCTCCAAACACC--tatgaactgaactgttctcct
gi|15 : tttgcactgaaagTATTTAT-T---TT-A----AAAATTAA--------TGTATG-TTCTCCTGATTTATCGTCTGTTTCATGACCCCTGTTACTGT-A-----T--G---TA------------------T-GTAAATAT-TTTC-ATGTGC-----C
gi|16 : tgaGTCTGTT---TGACCC------CTGT-AAT---T--TGCATA------------------T-GTAAATATGTTTC-ATGTAC-----CT-CATGTACCATTC----CCTGGTTT-GATTGTAATAAACTattc
gi|17 : tTTTTCATCTGTT---TGACCC------CTGT--------------TA------------------CCGTA--TA--TTT---TGTAC-----CT-CATGTACCATTC----CATGATTTCGAGTGgaa
gi|18 : TGT-A-----T--A---TA------------------T-TGAAATAC-TTT--------------T-CATGTACCATTC----CATGGTTT-GAGTGTAATAAACTaa
gi|19 : ga-GTATATACGTTTC-GCACACTAATACC-CATGTACCATTC----TATGATTT-GAGTGAAATAAAgaaa
gi|2 : ATCTTTATTGGGGAAAGCTTGCGGTTCAATAACA-----TG-ACAACAAATTGAATAAGGTTGTTTACATGTATGTATTTAACATGCATG-------ATAT----AGGAAAA-GTAAGA----AATCCATGAATTTCA-TGTTTG--AAAGTA--TTTAGACAAGTGGTGGCCTCTCAAACAT---G-T----------AACACGCAGTTTT-ATGCAACGTATTTTAAAGTCAAGTGTTAA-CAAAGGCTATGAGATCA-----A-----TT-TTACAAA-AATGACAGGAGGATATATCTACGGCTTCAAAGGGTGTAATTTACAGAATGTTCAACAAACAGAATTTGAATGTGATTAATATTCCACATT-----------A-TT----ACAAG-AAGTTACGA-AAG-ATTT-GAACTACAAACCATCACCTTAC---TGTTGAATTAGGCAGATG----AA---T---A---AAAGG-ATGAACGCTTTTGTATATTATGCAACTGTAACCAAATTGGAGT--ATGAATTTCATTATATTCTTGAATGTAAAG-----CATAGTGCA--A-AATTACG----T-------CAG----A----TT-T----------T---AACTA-----AAGAATACTGCT--AT-TCCCAAACACT---AAATAG-------TTTGTGATCTTATGCCTTCTAAA-ATTC-TGT--ATCT-CTAAGAAAGC-T---GCGCATGCTTAT-T---TTGA----AAATCCAAT-AAT-ACTGTCTG-TT-
gi|20 : agatatcctttgtatatgacaatttttacagaatg-GTGAATAAGTTTC-ATGTAC-----AG-CATGTACCATTCTATATATGGTTT-GAGTGTAATAAat
gi|21 : AAAAAG--TT--GTTTCTTTTTAT-T---ATGA----AAA-TCAAC-AAT-ATTGTCTG-TTATCC
gi|3 : ACTTAGCA--AATT-------ATATGACAGGGAAAA--TAATAG---AGTG-ATGACTTTCA-T-TTTG-AAAAGTAGTTTTA-ATAAAT-GTGGCCTCTC-----TTTGAAT-TGAGCATAGAACACGGAATTTTAACTCTAAATGGAATAAA-ACAATTGTGAATCAAAGACTACAAGATCG-----G-----TT-TTACAAA-AATGGCGTGATGGTATaag
gi|3 : atgcttcacagtgaaacttgatgatatcctttaaatgtaacaattttttactagaaggtctcttattgggcacaacgtgtcaacggcaatgataactaAATTATGACTTA-ATTTAGAACCACTAATCACCATCTTCCAGATCT---AGTAGGCAGATGGAATAA---CACGG---AAAGGAATAAACACTTCTGTATGTTATGCAACCGTAATCAAGTTGGAG---ATGAATGTTATTATTTTCTTGtgctaattatgacttaatttagaaccactaatcaccatcttccagatctagtaggcagatggaataacacggaaaggaataaacacttctgtatgttatgcaaccgtaatcaagttggagatgaatgttattattttcttg
gi|4 : atgcttcacagtgaaacttgatgatatcctttaaatgtaacaattttttactagaaggtctcttattgggcacaacgtgtcaacggcaatgataactaacttagcaaattatatgacagggaaaataatagagtgatgactttcattttgaaaagtagttttaataaatgtggcctctctttgaattgagcatagaacacggaattttaactctaaatggaataaaacaattgtgaatcaaagactacaagatcggttttacaaaaatggcgtgatggtattgctAACAAAT-GAGTAAGGTT-TTTGCATACATGTACATAACATGCATG-------A-----CAAAGAGA--GCAAC-G---AATCCATGGATTTCAGT-TTTG-AAAAGTA-CTTTAGACAAGT-ACGGATTGTCAAACATTTGG-T---ACCA--GNNNNNNNNNNNNNNNNNNNNNNNAGA--AGA-GCAA---CGAATCCATGGATTTCAGTTTATTTTTATTTTTTT-TTACAAA-AAAGGCACGAAGATATAT-----------
gi|5 : atggtctgcggtaaaacgggaagaaatcctttgtatataacaagttttacaagaatgatctcttattggcaaagttt-----CATTGCAT---A-CAGTCCGT------------AG----AGATTTT-T----------T---ACATA-----CAGAATATTATT--CTGTCCCAAACACC--AAAACAG-------TTTGTGAATTCATGTCTTCCAAAGATCC-TGTAGATTT-TTAAGATAT--T---G-GTGCCTTT-T-T---TTGAATTGAAAATCAGC-AAC-AGTATCTG-TTCTCCTAACTCTTTGTTTGTT---TGACCC------CTGTAA-----T--T---TGTAATTAGCAATGTATATTT-GTAAATACGTTTC-ATATAC-----CT-CATGTGCCATTC----CATGGTTT-GAGTGTAATAAACTcta
gi|6 : aTATAT-----------AAG--------TTGTA--------TACGAAT----TTTGAATGTGATGAATATTTGACATTTGACAAAGACAA-TTTAAAAGAAAAAAACTATGA-TAA-ATGCA-AACTACAAGACACCGCTTTCT---CTTCCAAGTAGGCAGGTGGAGTGACATT---G---AAGGAAATGAAAGCGATTATAGATTATGTATTTGGAAGCAGATTGAAGATCATGAATTTTATAGTATTCgaa
gi|7 : atttctcaaaagtggctcgataatatttctgagttatcaagggtagtggctAG---ATGA-TTTCGTTCTGAGCTTAAGTCTAAAGTAAGACATTGTGT---A-AATTGCCT---T-------TAG----ATTTTTTTT----------T---AGATA-----TAGAATATTGTT--CTGCTCCAAACACC--AAAAAAA-------TGTGTGAACTCATGTCTTCCAAAGATCT-TGT--A-GT-TTAAGAAAG--T----TGTGTCTTTTT-G---TTG
gi|8 : ttatctttccactgaattaagaaatacaaaatgccttcttttcattatgtaatagtcggtgataatttagactatcaGAG---ATTAATTTCATTATATTCTTCAATGTAAAA-----CAATGTAC---A-AATTGC-----T-------TAG----AGATTTT-T--------------AGCTA-----TAGAATACTGTT--CTGCCCCAAACATC--AAAAAAGAATTTTTTTTGAGAACTCATGTCGTTCAAAGATCC-AGT--ATTT-TCAGGAAAA--T----TGTGTCTTTTTGT---TTG-----AAAATCAAC-AAT-ACTGTCTGTTT-TCCTAACCCTTTG------------CCT------CTGT-A-----A--T---T-------------------T-GTAATTA
gi|9 : tga-TAA-ATTTA--ACTAGAAACCACCACCTTCC---TCTCGAATTAGGCAGATAGAGCAA---T---ATACAAAAGAAAGAACGTTATTGTAGTTTATGAAATTGTAATCATATTGGAC---AAGAATTTCATTAAATTTCAGAATGTATAG-----CATTGTGT---AGAATT---T---T-------TAA----Aa
Alignments
lowQualScore : 11111111111111111111111111111111111
lowQualScore : 1 2222 22222 1 1 3333333 11 111 222222 111 11 11 1 1 333333333333 11 1 44444444444 1 1 11111111111111111111111111111111111 2222 4444444444444444444 11 222222222 44444444444 111 11111 111 4444444444444 1111 3333333333333333 111111 22222222 2222222 1111 1 111111 555555555555555555555555555555555555 11111111
lowQualScore : 5 1 3333 77777 5 7 2 1 1 33 2222222 3 11 555 777777 2 111 33 77 2 0 1 0 3 777777777777 5 0 3 9 11 0 7 0 44444444444 0 0 1 1 00000000000000000000000000000000000 0 8888 1 0 5555555555555555555 0 7 1 8 8 1 00 0 555555555 3 55 77777777777 6 1 222 0 22222 0 1 333 5 3 1111111111111 0000 44 5555555555555555 333333 1 66 66 1 66666666 22 1 3 5 77 1 5 3333333 1 1 3 4 777 0000 77 4 3 4 7 0 777 222222 222222222222222222222222222222222222 88 66 77777777 9999 4
lowQualScore : . . .... ..... . . . . . .. ....... . .. ... ...... . ... .. .. . . . . . ............ . . . . .. . . . ........... . . . . ................................... . .... . . ................... . . . . . . .. . ......... . .. ........... . . ... . ..... . . ... . . ............. .... .. ................ ...... . .. .. . ........ .. . . . .. . . ....... . . . . ... .... .. . . . . . ... ...... .................................... .. .. ........ .... .
lowQualScore : 5 0 0000 00000 0 3 0 0 0 55 5555555 2 88 888 555555 5 000 22 00 5 0 0 5 2 888888888888 8 8 0 8 00 8 0 8 88888888888 0 0 0 2 22222222222222222222222222222222222 7 3333 0 7 3333333333333333333 7 3 2 0 0 0 88 8 888888888 8 66 22222222222 3 7 222 9 55555 8 0 888 0 4 1111111111111 6666 66 4444444444444444 888888 1 99 11 0 00000000 11 4 0 7 99 7 7 1111111 1 0 9 4 888 6666 11 4 7 4 8 4 888 888888 666666666666666666666666666666666666 99 55 66666666 4444 4
consensus : NATCTTTATCGGGNAAAGCTTGCGGTTCAACAGCAATCATTGGACAACAAATTGAGTAAGGTTGTTTACATNTATGTACNTAACATGCATG-------ATATGACAAGGAAAA-GTAACAG---AATCCATGGATTTCA-T-TTTG-AAAAGTA-TTTTAGACAAGT-GTGGNCTCTCGAACATTTGG-T-TGAGCATGGAACACGCAGTTTTAACGCTACGTGGATTAAA-NCAANTGCGAATCAAAGGCTATAAGATCA-----A-----TT-TTACAAA-AATGGCANGAAGATATAT-----------AAG--------TTGCA--------AACGAAT----TTTGAATGTGATNAATATTCGACATT--ACAAAGA-AA-TT----ACGAGAAAACTATGA-TAA-ATTTAGAACTACAAACCACCGCCTTCC---TCTCGAANTAGGCAGATGGAGTAA---T---G---AAAGGAATGAACGCTTTTGTACGTTATGCAACTGTAACCAAATTGGAG---ATGAATTTCATTATATTCTTGAATGTAAAG-----CATTGNGT---A-AATTGCGT---T-------TAG----AGATTTT-T----------T---AGATA-----TAGAATACTGTT--CTGCCCCAAACACC--AAAANAG-------TTTGTGAACTCATGTCTTCCAAAGATCC-TGT--ATCT-CTAAGAAAG--T---GTGTGTNTTTAT-T---TTGA----AAAATCAAC-AAT-ACTGTCTG-TT-TCCTGACTTTTCGTCTGTT---TGACCC------CTGT-A-----T--T---TA------------------T-GTAAATACGTTTC-ATGTAC-----CT-CATGTACCATTC----CATGGTTT-GAGTGTAATAAACT
Reference ( family-705 ) : NATCTTTATCGGGNAAAGCTTGCGGTTCAACAGCAATCATTGGACAACAAATTGAGTAAGGTTGTTTACATNTATGTACNTAACATGCATG-------ATATGACAAGGAAAA-GTAACAG---AATCCATGGATTTCA-T-TTTG-AAAAGTA-TTTTAGACAAGT-GTGGNCTCTCGAACATTTGG-T-TGAGCATGGAACACGCAGTTTTAACGCTACGTGGATTAAA-NCAANTGCGAATCAAAGGCTATAAGATCA-----A-----TT-TTACAAA-AATGGCANGAAGATATAT-----------AAG--------TTGCA--------AACGAAT----TTTGAATGTGATNAATATTCGACATT--ACAAAGA-AA-TT----ACGAGAAAACTATGA-TAA-ATTTAGAACTACAAACCACCGCCTTCC---TCTCGAANTAGGCAGATGGAGTAA---T---G---AAAGGAATGAACGCTTTTGTACGTTATGCAACTGTAACCAAATTGGAG---ATGAATTTCATTATATTCTTGAATGTAAAG-----CATTGNGT---A-AATTGCGT---T-------TAG----AGATTTT-T----------T---AGATA-----TAGAATACTGTT--CTGCCCCAAACACC--AAAANAG-------TTTGTGAACTCATGTCTTCCAAAGATCC-TGT--ATCT-CTAAGAAAG--T---GTGTGTNTTTAT-T---TTGA----AAAATCAAC-AAT-ACTGTCTG-TT-TCCTGACTTTTCGTCTGTT---TGACCC------CTGT-A-----T--T---TA------------------T-GTAAATACGTTTC-ATGTAC-----CT-CATGTACCATTC----CATGGTTT-GAGTGTAATAAACT
gi|1 : ATCTT-ATCGGGCAAAGCTTA----TCAACAGCAATCATTGGATAACAAACTTGGCAAGGTTATTTATATCTATGTACGTAACATACATGTACATAGATATGACAAAGAAAAAGTAACAATTAAATCCATAGATTTCA-T-TTCGGAAAAGTA-TGTTAGACAGGT-GTGAACTCTGGAACATTTGG-TATGAGCATGAAACACGCTGTTATAATGCTATGTGGATTAAG-TTAACTGCGAACCAAAGGCTATAAGATCA-----A-----TTATTACAAATTATAAAAAAAAAATAAAT-----------AAA--------TT--A--------AACAAAT----TTTGACTGTGAGAAATACTTGACATT--ACAAAGA-AAGTT----ACGAGAAATCTTTAT-TAAGATATAGAACTACAAACT-TTGACTTCC----CT-----------------GTGA-----------AAACGAATGAACGCTTTTGTATGTTTTGTAACTGTAACCAAATTGGAA---ACGAAT---------TTCTGGAATGTAAAG-----CATTGAGC---A-AATTACATACATGTACCGGTAG----GTGTTTT-T----------TTTAAAATA-----CAAAGTAGTGTT--CTGCCCCAAACACC--AAAAGAAT------TTTGTGAATTCATGTCTTCTAAAGATTC-CGT--ATCT-CTAAAAAAA--T---ATGTATGTTTAT-T---TTGA----AAAATCAAT-AAT-ATTGTCTG-TT---CTGATTTTTCGTCTGTT---T-----------CTGT-A-----T--T---TA------------------T-GTAAATATTTTCC-ATGTAC-----CTCCACGTACCA-CC----CATGGCCC-GAGTGAAATAAACT
gi|10 : tAGAAATAAACGCTTCTGTACGTTATGCCACTGTAACCAAATTGGTG---ATGAATTTCATTTTATTCTTGAATGTAAAG-----GAAAGGATAACA-AACAGCGA---T-------CAGTCTCAGACTTTGTGTAAATTGCGT---AGAGATTGTTTAGAATATTGTT--CTGCTCCAAACACC--AAA
gi|11 : CCAAACACTGTAAAAAA----------TATGAATTTA-GTCCTCCATAAATTC-TGT--ATAA-TTAAGAAAG--TCACATGTATGTTTGT-TCATTTCA----AAAACAAAT-AATTGCTGTCTG-TT-TGC---CTTTTC-TCTGTT---TGAC-------------A-----C--T---TA----------------------AAATATGTAACTATATAC---------ATGTACCACTC----CACTGTCT-CAGTGtaatancagtctcagactttgtg
gi|12 : TA-----AAGAATACTGTTATTTCCCCCAAACACT--AAAATAG-------TT-GTGA-------TCTT------ATCTGTGT--ATCTGCTAAGAAAAGCT---GTGTATGTTTAT-T---TTGA----AAAATCAATGAAT-AATGCCTG-TT-CTCTGATGTTTTATTTG-T---TGATCC------TTGT-
gi|13 : ATCAAC-AGT-ATTGTCTG-TTCTCCTAACGCTTTGTCTGTT---TGACCC------CTGT-AATTTGTAAT---TA------------------T-GTAAATACGTT-----------------CATGTACCATTC----CATGGTTT-GAGTGTACTAAtaaatcttcttatatgta
gi|14 : ttgaactggacaaaacaagtAAACAAATGGGAG---ATGAATTTCATTATATTCTTGAATGTAAGA-----CATAGGGT---A-AAATGCA------------TAG----AGATTTT-T----------T---AGATG-----TAGAATATTGTT--CTGCTCCAAACACC--tatgaactgaactgttctcct
gi|15 : tttgcactgaaagTATTTAT-T---TT-A----AAAATTAA--------TGTATG-TTCTCCTGATTTATCGTCTGTTTCATGACCCCTGTTACTGT-A-----T--G---TA------------------T-GTAAATAT-TTTC-ATGTGC-----C
gi|16 : tgaGTCTGTT---TGACCC------CTGT-AAT---T--TGCATA------------------T-GTAAATATGTTTC-ATGTAC-----CT-CATGTACCATTC----CCTGGTTT-GATTGTAATAAACTattc
gi|17 : tTTTTCATCTGTT---TGACCC------CTGT--------------TA------------------CCGTA--TA--TTT---TGTAC-----CT-CATGTACCATTC----CATGATTTCGAGTGgaa
gi|18 : TGT-A-----T--A---TA------------------T-TGAAATAC-TTT--------------T-CATGTACCATTC----CATGGTTT-GAGTGTAATAAACTaa
gi|19 : ga-GTATATACGTTTC-GCACACTAATACC-CATGTACCATTC----TATGATTT-GAGTGAAATAAAgaaa
gi|2 : ATCTTTATTGGGGAAAGCTTGCGGTTCAATAACA-----TG-ACAACAAATTGAATAAGGTTGTTTACATGTATGTATTTAACATGCATG-------ATAT----AGGAAAA-GTAAGA----AATCCATGAATTTCA-TGTTTG--AAAGTA--TTTAGACAAGTGGTGGCCTCTCAAACAT---G-T----------AACACGCAGTTTT-ATGCAACGTATTTTAAAGTCAAGTGTTAA-CAAAGGCTATGAGATCA-----A-----TT-TTACAAA-AATGACAGGAGGATATATCTACGGCTTCAAAGGGTGTAATTTACAGAATGTTCAACAAACAGAATTTGAATGTGATTAATATTCCACATT-----------A-TT----ACAAG-AAGTTACGA-AAG-ATTT-GAACTACAAACCATCACCTTAC---TGTTGAATTAGGCAGATG----AA---T---A---AAAGG-ATGAACGCTTTTGTATATTATGCAACTGTAACCAAATTGGAGT--ATGAATTTCATTATATTCTTGAATGTAAAG-----CATAGTGCA--A-AATTACG----T-------CAG----A----TT-T----------T---AACTA-----AAGAATACTGCT--AT-TCCCAAACACT---AAATAG-------TTTGTGATCTTATGCCTTCTAAA-ATTC-TGT--ATCT-CTAAGAAAGC-T---GCGCATGCTTAT-T---TTGA----AAATCCAAT-AAT-ACTGTCTG-TT-
gi|20 : agatatcctttgtatatgacaatttttacagaatg-GTGAATAAGTTTC-ATGTAC-----AG-CATGTACCATTCTATATATGGTTT-GAGTGTAATAAat
gi|21 : AAAAAG--TT--GTTTCTTTTTAT-T---ATGA----AAA-TCAAC-AAT-ATTGTCTG-TTATCC
gi|3 : ACTTAGCA--AATT-------ATATGACAGGGAAAA--TAATAG---AGTG-ATGACTTTCA-T-TTTG-AAAAGTAGTTTTA-ATAAAT-GTGGCCTCTC-----TTTGAAT-TGAGCATAGAACACGGAATTTTAACTCTAAATGGAATAAA-ACAATTGTGAATCAAAGACTACAAGATCG-----G-----TT-TTACAAA-AATGGCGTGATGGTATaag
gi|3 : atgcttcacagtgaaacttgatgatatcctttaaatgtaacaattttttactagaaggtctcttattgggcacaacgtgtcaacggcaatgataactaAATTATGACTTA-ATTTAGAACCACTAATCACCATCTTCCAGATCT---AGTAGGCAGATGGAATAA---CACGG---AAAGGAATAAACACTTCTGTATGTTATGCAACCGTAATCAAGTTGGAG---ATGAATGTTATTATTTTCTTGtgctaattatgacttaatttagaaccactaatcaccatcttccagatctagtaggcagatggaataacacggaaaggaataaacacttctgtatgttatgcaaccgtaatcaagttggagatgaatgttattattttcttg
gi|4 : atgcttcacagtgaaacttgatgatatcctttaaatgtaacaattttttactagaaggtctcttattgggcacaacgtgtcaacggcaatgataactaacttagcaaattatatgacagggaaaataatagagtgatgactttcattttgaaaagtagttttaataaatgtggcctctctttgaattgagcatagaacacggaattttaactctaaatggaataaaacaattgtgaatcaaagactacaagatcggttttacaaaaatggcgtgatggtattgctAACAAAT-GAGTAAGGTT-TTTGCATACATGTACATAACATGCATG-------A-----CAAAGAGA--GCAAC-G---AATCCATGGATTTCAGT-TTTG-AAAAGTA-CTTTAGACAAGT-ACGGATTGTCAAACATTTGG-T---ACCA--GNNNNNNNNNNNNNNNNNNNNNNNAGA--AGA-GCAA---CGAATCCATGGATTTCAGTTTATTTTTATTTTTTT-TTACAAA-AAAGGCACGAAGATATAT-----------
gi|5 : atggtctgcggtaaaacgggaagaaatcctttgtatataacaagttttacaagaatgatctcttattggcaaagttt-----CATTGCAT---A-CAGTCCGT------------AG----AGATTTT-T----------T---ACATA-----CAGAATATTATT--CTGTCCCAAACACC--AAAACAG-------TTTGTGAATTCATGTCTTCCAAAGATCC-TGTAGATTT-TTAAGATAT--T---G-GTGCCTTT-T-T---TTGAATTGAAAATCAGC-AAC-AGTATCTG-TTCTCCTAACTCTTTGTTTGTT---TGACCC------CTGTAA-----T--T---TGTAATTAGCAATGTATATTT-GTAAATACGTTTC-ATATAC-----CT-CATGTGCCATTC----CATGGTTT-GAGTGTAATAAACTcta
gi|6 : aTATAT-----------AAG--------TTGTA--------TACGAAT----TTTGAATGTGATGAATATTTGACATTTGACAAAGACAA-TTTAAAAGAAAAAAACTATGA-TAA-ATGCA-AACTACAAGACACCGCTTTCT---CTTCCAAGTAGGCAGGTGGAGTGACATT---G---AAGGAAATGAAAGCGATTATAGATTATGTATTTGGAAGCAGATTGAAGATCATGAATTTTATAGTATTCgaa
gi|7 : atttctcaaaagtggctcgataatatttctgagttatcaagggtagtggctAG---ATGA-TTTCGTTCTGAGCTTAAGTCTAAAGTAAGACATTGTGT---A-AATTGCCT---T-------TAG----ATTTTTTTT----------T---AGATA-----TAGAATATTGTT--CTGCTCCAAACACC--AAAAAAA-------TGTGTGAACTCATGTCTTCCAAAGATCT-TGT--A-GT-TTAAGAAAG--T----TGTGTCTTTTT-G---TTG
gi|8 : ttatctttccactgaattaagaaatacaaaatgccttcttttcattatgtaatagtcggtgataatttagactatcaGAG---ATTAATTTCATTATATTCTTCAATGTAAAA-----CAATGTAC---A-AATTGC-----T-------TAG----AGATTTT-T--------------AGCTA-----TAGAATACTGTT--CTGCCCCAAACATC--AAAAAAGAATTTTTTTTGAGAACTCATGTCGTTCAAAGATCC-AGT--ATTT-TCAGGAAAA--T----TGTGTCTTTTTGT---TTG-----AAAATCAAC-AAT-ACTGTCTGTTT-TCCTAACCCTTTG------------CCT------CTGT-A-----A--T---T-------------------T-GTAATTA
gi|9 : tga-TAA-ATTTA--ACTAGAAACCACCACCTTCC---TCTCGAATTAGGCAGATAGAGCAA---T---ATACAAAAGAAAGAACGTTATTGTAGTTTATGAAATTGTAATCATATTGGAC---AAGAATTTCATTAAATTTCAGAATGTATAG-----CATTGTGT---AGAATT---T---T-------TAA----Aa
blockSeqs : T G CGGT . . T G G T TG . T GA AG TAG C TG A GT G G C A T ATTGAGCATAG A C T GT G T TTTTTATTTTT . . G G CTACGGCTTCAAAGGGTGTAATTTACAGAATGTTC AGAA T TGACAAAGACAATTTAAA A G C . T AG TGTTGA T GA CACGG C C ATC TAAGA G AAC G G GAT TCTC GA GTGTAAATTGCGT TTGTTT T AT GT A GAATTTTT AT T A G AG A G TCACA A G G G CAT ATTG TG T C T C TCA CTGTTA AATTTGTAATTAGCAATGTATATTT TG CT TAATACC TATA C
blockSeqs : . . A T TG . T . A GA C GT A C G . C A T TACCAG N A A A T T A . . T T AAGTTGTA . G ATT . A . . T G AGATCT G GA CATTG T A T . G A . G CTT . GA TTT A C . . T G TC T G . . C . GCTG A G A . . . T . A . C . . AATTTGTAATTAT CG C CT . .
blockSeqs : A . . . . G CG . T . . . . A . . T . N . G . . G . . C A A . . G A CTTCCA G GA TATAC T C . . T . . A GT . GA TT T T . . T G AT T G . . C . CTG A A A . . . C . T . A . . AATTTGCATAT TG C CT . .
blockSeqs : . . T A TCTCGA T . TA G T . . C . . C GT . TT TT A C . . C G AC T G . . T . TTG C G A . . . T . C . C . . ATGTAT CG C AG . .
blockSeqs : G G . . T . . G TT . GA TT C T . . A A AC . . . . G . TG G T A . . . C . T . . . . ATATAT AG C CT . .
blockSeqs : T . . T . . G A . . T T T . . A . . . . . . T . T G C T . . . C . G . . . . ACTTA CG C T . .
blockSeqs : . . T . . . T . T C . . T G C T . . . C . C . . . . AATTT T . . . .
blockSeqs : . . C . . . . . . . . . . TACC C . . . .
blockSeqs : . .
blockSeqCons : A* CGTCGA*** GA CATNG****** NT*********** TT************** G******* TCG**** AATTTGTATAT************************* CT******
originalCons : NATCTTTATCGGGNAAAGCTTGCGGTTCAACAGCAATCATTGGACAACAAATTGAGTAAGGTTGTTTACATNTATGTACNTAACATGCATG-------ATATGACAAGGAAAA-GTAACAG---AATCCATGGATTTCA-T-TTTG-AAAAGTA-TTTTAGACAAGT-GTGGNCTCTCGAACATTTGG-T-TGAGCATGGAACACGCAGTTTTAACGCTACGTGGATTAAA-NCAANTGCGAATCAAAGGCTATAAGATCA-----A-----TT-TTACAAA-AATGGCANGAAGATATAT-----------AAG--------TTGCA--------AACGAAT----TTTGAATGTGATNAATATTCGACATT--ACAAAGA-AA-TT----ACGAGAAAACTATGA-TAA-ATTTAGAACTACAAACCACCGCCTTCC---TCTCGAANTAGGCAGATGGAGTAA---T---G---AAAGGAATGAACGCTTTTGTACGTTATGCAACTGTAACCAAATTGGAG---ATGAATTTCATTATATTCTTGAATGTAAAG-----CATTGNGT---A-AATTGCGT---T-------TAG----AGATTTT-T----------T---AGATA-----TAGAATACTGTT--CTGCCCCAAACACC--AAAANAG-------TTTGTGAACTCATGTCTTCCAAAGATCC-TGT--ATCT-CTAAGAAAG--T---GTGTGTNTTTAT-T---TTGA----AAAATCAAC-AAT-ACTGTCTG-TT-TCCTGACTTTTCGTCTGTT---TGACCC------CTGT-A-----T--T---TA------------------T-GTAAATACGTTTC-ATGTAC-----CT-CATGTACCATTC----CATGGTTT-GAGTGTAATAAACT
finalCons : NATCTTTATCGGGNAAAGCTTGCGGTTCAACAGCAATCATTGGACAACAAATTGAGTAAGGTTGTTTACATNTATGTACNTAACATGCATG-------ATATGACAAGGAAAA-GTAACAG---AATCCATGGATTTCA-T-TTTG-AAAAGTA-TTTTAGACAAGT-GTGGNCTCTCGAACATTTGG-T-TGAGCATGGAACACGCAGTTTTAACGCTACGTGGATTAAA-NCAANTGCGAATCAAAGGCTATAAGATCA-----A-----TT-TTACAAA-AATGGCANGAAGATATAT-----------AAG--------TTGCA--------AACGAAT----TTTGAATGTGATNAATATTCGACATT--ACAAAGA-AA-TT----ACGAGAAAACTATGA-TAA-ATTTA-AACTACAAACCACCGCCTTCCCGTCGA---ANTAGGCAGATGGAGTAACATNG------AAAGGAATGAACGCTTTTGTACGTTATGCAACTGTAACCAAATTGGAG---ATGAATTTCATTATATTCTTGAATGTAAAG-----CATTGNGT---A-AATTGCNT-----------TAG----AGATTTTTT--------------AGATA-----TAGAATACTGTT--CTGCCCCAAACACC--AAAANAG-------TTTGTGAACTCATGTCTTCCAAAGATCC-TGT--ATCT-CTAAGAAAGTCG----TGTGTNTTTAT-T---TTGA----AAAATCAAC-AAT-ACTGTCTG-TT-TCCTGACTTTTCGTCTGTT---TGACCC------CTGTAATTTGTATAT-------------------------GTAAATACGTTTC-ATGTACCT------CATGTACCATTC----CATGGTTT-GAGTGTAATAAACT
Alignments
lowQualScore : 11111111111111111111111111111111111
lowQualScore : 1 2222 22222 1 1 3333333 11 111 222222 111 11 11 1 1 333333333333 11 1 44444444444 1 1 11111111111111111111111111111111111 2222 4444444444444444444 1 222222222 111111 111 11111 111 4444444444444444444444444444444444444444444444 111111 22222222 1111 1 111111111111 222222222222 11 11111111
lowQualScore : 5 1 3333 77777 5 7 2 1 1 33 2222222 3 11 555 777777 2 111 33 77 2 0 1 0 3 777777777777 5 0 3 9 11 0 7 0 44444444444 0 0 1 1 00000000000000000000000000000000000 0 8888 1 0 5555555555555555555 0 7 1 8 8 1 6 0 0 333333333 3 1 555555 6 1 222 0 22222 0 1 333 5 6666666666666666666666666666666666666666666666 333333 1 66 66 1 66666666 22 1 3 5 77 1 5 55 9999 7 1 1 777 2 0000 77 4 3 4 7 0 777 4 2 444444444444 222222222222 55 22 666 44444444 9999 4
lowQualScore : . . .... ..... . . . . . .. ....... . .. ... ...... . ... .. .. . . . . . ............ . . . . .. . . . ........... . . . . ................................... . .... . . ................... . . . . . . . . . ......... . . ...... . . ... . ..... . . ... . .............................................. ...... . .. .. . ........ .. . . . .. . . .. .... . . . ... . .... .. . . . . . ... . . ............ ............ .. .. ... ........ .... .
lowQualScore : 5 0 0000 00000 0 3 0 0 0 55 5555555 2 88 888 555555 5 000 22 00 5 0 0 5 2 888888888888 8 8 0 8 00 8 0 8 88888888888 0 0 0 2 22222222222222222222222222222222222 7 3333 0 7 3333333333333333333 7 3 2 0 0 0 0 8 8 666666666 2 4 222222 3 7 222 9 55555 8 0 888 0 6666666666666666666666666666666666666666666666 888888 1 99 11 0 00000000 11 4 0 7 99 7 7 22 1111 4 0 4 888 5 6666 11 4 7 4 8 4 888 4 2 333333333333 888888888888 00 33 888 99999999 4444 4
consensus : NATCTTTATCGGGNAAAGCTTGCGGTTCAACAGCAATCATTGGACAACAAATTGAGTAAGGTTGTTTACATNTATGTACNTAACATGCATG-------ATATGACAAGGAAAA-GTAACAG---AATCCATGGATTTCA-T-TTTG-AAAAGTA-TTTTAGACAAGT-GTGGNCTCTCGAACATTTGG-T-TGAGCATGGAACACGCAGTTTTAACGCTACGTGGATTAAA-NCAANTGCGAATCAAAGGCTATAAGATCA-----A-----TT-TTACAAA-AATGGCANGAAGATATAT-----------AAG--------TTGCA--------AACGAAT----TTTGAATGTGATNAATATTCGACATT--ACAAAGA-AA-TT----ACGAGAAAACTATGA-TAA-ATTTAGAACTACAAACCACCGCCTTCCCG-TCGAANTAGGCAGATGGAGTAACATGGAAAGGAATGAACGCTTTTGTACGTTATGCAACTGTAACCAAATTGGAG---ATGAATTTCATTATATTCTTGAATGTAAAG-----CATTGNGT---A-AATTGC-GT-----------TAG----AGATTTT---T----------T---AGATA-----TAGAATACTGTT--CTGCCCCAAACACC--AAAANAG-------TTTGTGAACTCATGTCTTCCAAAGATCC-TGT--ATCT-CTAAGAAA-GTTG--TGTNTNTTTATT---TTGA----AAAATCAAC-AAT-ACTGTCTG-TT-TCCTGACTTTTCGTCTGTT---TGACCCCTG-TAA---TT-TGTA--TA------------TGT--AAATACGTTTCATGTAC-----CT-CATGTACCATTC----CATGGTTT-GAGTGTAATAAACT
Reference ( family-705 ) : NATCTTTATCGGGNAAAGCTTGCGGTTCAACAGCAATCATTGGACAACAAATTGAGTAAGGTTGTTTACATNTATGTACNTAACATGCATG-------ATATGACAAGGAAAA-GTAACAG---AATCCATGGATTTCA-T-TTTG-AAAAGTA-TTTTAGACAAGT-GTGGNCTCTCGAACATTTGG-T-TGAGCATGGAACACGCAGTTTTAACGCTACGTGGATTAAA-NCAANTGCGAATCAAAGGCTATAAGATCA-----A-----TT-TTACAAA-AATGGCANGAAGATATAT-----------AAG--------TTGCA--------AACGAAT----TTTGAATGTGATNAATATTCGACATT--ACAAAGA-AA-TT----ACGAGAAAACTATGA-TAA-ATTTA-AACTACAAACCACCGCCTTCCCG-TCGAANTAGGCAGATGGAGTAACATNGAAAGGAATGAACGCTTTTGTACGTTATGCAACTGTAACCAAATTGGAG---ATGAATTTCATTATATTCTTGAATGTAAAG-----CATTGNGT---A-AATTGC-NT-----------TAG----AGATTTT---T----------T---AGATA-----TAGAATACTGTT--CTGCCCCAAACACC--AAAANAG-------TTTGTGAACTCATGTCTTCCAAAGATCC-TGT--ATCT-CTAAGAAA-GTCG--TGTGTNTTTATT---TTGA----AAAATCAAC-AAT-ACTGTCTG-TT-TCCTGACTTTTCGTCTGTT---TGACCCCTG-TAA---TT-TGTA--TA------------TGT--AAATACGTTTCATGTAC-----CT-CATGTACCATTC----CATGGTTT-GAGTGTAATAAACT
gi|1 : ATCTT-ATCGGGCAAAGCTTA----TCAACAGCAATCATTGGATAACAAACTTGGCAAGGTTATTTATATCTATGTACGTAACATACATGTACATAGATATGACAAAGAAAAAGTAACAATTAAATCCATAGATTTCA-T-TTCGGAAAAGTA-TGTTAGACAGGT-GTGAACTCTGGAACATTTGG-TATGAGCATGAAACACGCTGTTATAATGCTATGTGGATTAAG-TTAACTGCGAACCAAAGGCTATAAGATCA-----A-----TTATTACAAATTATAAAAAAAAAATAAAT-----------AAA--------TT--A--------AACAAAT----TTTGACTGTGAGAAATACTTGACATT--ACAAAGA-AAGTT----ACGAGAAATCTTTAT-TAAGATATAGAACTACAAACT-TTGACTTCCC----------------TG--------TGAAAACGAATGAACGCTTTTGTATGTTTTGTAACTGTAACCAAATTGGAA---ACGAAT---------TTCTGGAATGTAAAG-----CATTGAGC---A-AATTAC-ATACATGTACCGGTAG----GTGTTTT---T----------TTTAAAATA-----CAAAGTAGTGTT--CTGCCCCAAACACC--AAAAGAAT------TTTGTGAATTCATGTCTTCTAAAGATTC-CGT--ATCT-CTAAAAAA-AT-A--TGTATGTTTATT---TTGA----AAAATCAAT-AAT-ATTGTCTG-TT---CTGATTTTTCGTCTGTT---T-----CTG-T-A---TT-------TA------------TGT--AAATATTTTCCATGTAC-----CTCCACGTACCA-CC----CATGGCCC-GAGTGAAATAAACT
gi|10 : tAGAAATAAACGCTTCTGTACGTTATGCCACTGTAACCAAATTGGTG---ATGAATTTCATTTTATTCTTGAATGTAAAG-----GAAAGGATAACA-AACAGCGAT-----------CAGTCTCAGACTTTG--TGTAAATTGCGT---AGAGATTGTTTAGAATATTGTT--CTGCTCCAAACACC--AAA
gi|11 : CCAAACACTGTAAAAAA----------TATGAATTTA-GTCCTCCATAAATTC-TGT--ATAA-TTAAGAAA-GTCACATGTATGTTTGTTCATTTCA----AAAACAAAT-AATTGCTGTCTG-TT-TGC---CTTTTC-TCTGTT---TGACACTTA--AA---------A--TA------------TGT--AACTA-------TATAC---------ATGTACCACTC----CACTGTCT-CAGTGtaatancagtctcagactttgtg
gi|12 : TA-----AAGAATACTGTTATTTCCCCCAAACACT--AAAATAG-------TT-GTGA-------TCTT------ATCTGTGT--ATCTGCTAAGAAAAGCTG--TGTATGTTTATT---TTGA----AAAATCAATGAAT-AATGCCTG-TT-CTCTGATGTTTTATTTG-T---TGATCCTTGTTAAATCTT-CTTA--TA------------TGT--A
gi|13 : ATCAAC-AGT-ATTGTCTG-TTCTCCTAACGCTTTGTCTGTT---TGACCCCTG-TAA---TT-TGTAATTA------------TGT--AAATACGT---------------T-CATGTACCATTC----CATGGTTT-GAGTGTACTAA
gi|14 : ttgaactggacaaaacaagtAAACAAATGGGAG---ATGAATTTCATTATATTCTTGAATGTAAGA-----CATAGGGT---A-AAATGC-A------------TAG----AGATTTT---T----------T---AGATG-----TAGAATATTGTT--CTGCTCCAAACACC--tatgaactgaactgttctcct
gi|15 : tttgcactgaaagTATTTATT---TT-A----AAAATTAA--------TGTATG-TTCTCCTGATTTATCGTCTGTTTCATGACCCCTG-TTA---CTGTATG--TA------------TGT--AAATAT-TTTCATGTGC-----C
gi|16 : tgaGTCTGTT---TGACCCCTG-TAA---TT-TGCA--TA------------TGT--AAATATGTTTCATGTAC-----CT-CATGTACCATTC----CCTGGTTT-GATTGTAATAAACTattc
gi|17 : tTTTTCATCTGTT---TGACCCCTG-TTA----C-CGTA--TA------------T-----------TT---TGTAC-----CT-CATGTACCATTC----CATGATTTCGAGTGgaa
gi|18 : -TGTA--TA------------TATTGAAATAC-TTT-------------T-CATGTACCATTC----CATGGTTT-GAGTGTAATAAACTaa
gi|19 : gaGT--ATATACGTTTCGCACACTAATACC-CATGTACCATTC----TATGATTT-GAGTGAAATAAAgaaa
gi|2 : ATCTTTATTGGGGAAAGCTTGCGGTTCAATAACA-----TG-ACAACAAATTGAATAAGGTTGTTTACATGTATGTATTTAACATGCATG-------ATAT----AGGAAAA-GTAAGA----AATCCATGAATTTCA-TGTTTG--AAAGTA--TTTAGACAAGTGGTGGCCTCTCAAACAT---G-T----------AACACGCAGTTTT-ATGCAACGTATTTTAAAGTCAAGTGTTAA-CAAAGGCTATGAGATCA-----A-----TT-TTACAAA-AATGACAGGAGGATATATCTACGGCTTCAAAGGGTGTAATTTACAGAATGTTCAACAAACAGAATTTGAATGTGATTAATATTCCACATT-----------A-TT----ACAAG-AAGTTACGA-AAG-ATTTG-AACTACAAACCATCACCTTACTG-TTGAATTAGGCAGAT-GAATA------AAAGG-ATGAACGCTTTTGTATATTATGCAACTGTAACCAAATTGGAGT--ATGAATTTCATTATATTCTTGAATGTAAAG-----CATAGTGCA--A-AATTAC-GT-----------CAG----A----TT---T----------T---AACTA-----AAGAATACTGCT--AT-TCCCAAACACT---AAATAG-------TTTGTGATCTTATGCCTTCTAAA-ATTC-TGT--ATCT-CTAAGAAA-GCTG--CGCATGCTTATT---TTGA----AAATCCAAT-AAT-ACTGTCTG-TT-
gi|20 : agatatcctttgtatatgacaatttttacagaatgGT--GAATAAGTTTCATGTAC-----AG-CATGTACCATTCTATATATGGTTT-GAGTGTAATAAat
gi|21 : AAAAA-GTTG--TTTCTTTTTATT---ATGA----AAA-TCAAC-AAT-ATTGTCTG-TTATCC
gi|3 : ACTTAGCA--AATT-------ATATGACAGGGAAAA--TAATAG---AGTG-ATGACTTTCA-T-TTTG-AAAAGTAGTTTTA-ATAAAT-GTGGCCTCTC-----TTTGAAT-TGAGCATAGAACACGGAATTTTAACTCTAAATGGAATAAA-ACAATTGTGAATCAAAGACTACAAGATCG-----G-----TT-TTACAAA-AATGGCGTGATGGTATaag
gi|3 : atgcttcacagtgaaacttgatgatatcctttaaatgtaacaattttttactagaaggtctcttattgggcacaacgtgtcaacggcaatgataactaAATTATGACTTA-ATTTAGAACCACTAATCACCATCTTCCAGATCTA-GTAGGCAGATGGAATAACACGGAAAGGAATAAACACTTCTGTATGTTATGCAACCGTAATCAAGTTGGAG---ATGAATGTTATTATTTTCTTGtgctaattatgacttaatttagaaccactaatcaccatcttccagatctagtaggcagatggaataacacggaaaggaataaacacttctgtatgttatgcaaccgtaatcaagttggagatgaatgttattattttcttg
gi|4 : atgcttcacagtgaaacttgatgatatcctttaaatgtaacaattttttactagaaggtctcttattgggcacaacgtgtcaacggcaatgataactaacttagcaaattatatgacagggaaaataatagagtgatgactttcattttgaaaagtagttttaataaatgtggcctctctttgaattgagcatagaacacggaattttaactctaaatggaataaaacaattgtgaatcaaagactacaagatcggttttacaaaaatggcgtgatggtattgctAACAAAT-GAGTAAGGTT-TTTGCATACATGTACATAACATGCATG-------A-----CAAAGAGA--GCAAC-G---AATCCATGGATTTCAGT-TTTG-AAAAGTA-CTTTAGACAAGT-ACGGATTGTCAAACATTTGG-T---ACCA--GNNNNNNNNNNNNNNNNNNNNNNNAGA--AGA-GCAA---CGAATCCATGGATTTCAGTTTATTTTTATTTTTTT-TTACAAA-AAAGGCACGAAGATATAT-----------
gi|5 : atggtctgcggtaaaacgggaagaaatcctttgtatataacaagttttacaagaatgatctcttattggcaaagttt-----CATTGCAT---A-CAGTCC-GT------------AG----AGATTTT---T----------T---ACATA-----CAGAATATTATT--CTGTCCCAAACACC--AAAACAG-------TTTGTGAATTCATGTCTTCCAAAGATCC-TGTAGATTT-TTAAGATA--TTG---GTGCCTTT-TT---TTGAATTGAAAATCAGC-AAC-AGTATCTG-TTCTCCTAACTCTTTGTTTGTT---TGACCCCTG-TAA---TT-TGTAATTAGCAATGTATATTTGT--AAATACGTTTCATATAC-----CT-CATGTGCCATTC----CATGGTTT-GAGTGTAATAAACTcta
gi|6 : aTATAT-----------AAG--------TTGTA--------TACGAAT----TTTGAATGTGATGAATATTTGACATTTGACAAAGACAA-TTTAAAAGAAAAAAACTATGA-TAA-ATGCA-AACTACAAGACACCGCTTTCTCT-TCCAAGTAGGCAGGTGGAGTGACATTGAAGGAAATGAAAGCGATTATAGATTATGTATTTGGAAGCAGATTGAAGATCATGAATTTTATAGTATTCgaa
gi|7 : atttctcaaaagtggctcgataatatttctgagttatcaagggtagtggctAG---ATGA-TTTCGTTCTGAGCTTAAGTCTAAAGTAAGACATTGTGT---A-AATTGC-CT-----------T-T----AGATTTTTTTT----------T---AGATA-----TAGAATATTGTT--CTGCTCCAAACACC--AAAAAAA-------TGTGTGAACTCATGTCTTCCAAAGATCT-TGT--A-GT-TTAAGAAA-GTTG--TGTCTTTTTGTT---
gi|8 : ttatctttccactgaattaagaaatacaaaatgccttcttttcattatgtaatagtcggtgataatttagactatcaGAG---ATTAATTTCATTATATTCTTCAATGTAAAA-----CAATGTAC---A-AATTGC--T-----------TAG----AGATTTT---T--------------AGCTA-----TAGAATACTGTT--CTGCCCCAAACATC--AAAAAAGAATTTTTTTTGAGAACTCATGTCGTTCAAAGATCC-AGT--ATTT-TCAGGAAA-ATTG--TGTCTTTTTGTT---T--G----AAAATCAAC-AAT-ACTGTCTGTTT-TCCTAACCCTTTG------------CCTCTG-TAA---TT-TGTA--g
gi|9 : tga-TAA-ATTTA-A-CTAGAAACCACCACCTTCCTC-TCGAATTAGGCAGATAGAGCAATATACAAAAGAAAGAACGTTATTGTAGTTTATGAAATTGTAATCATATTGGAC---AAGAATTTCATTAAATTTCAGAATGTATAG-----CATTGTGT---AGAATTattaa