lowQualScore : 111111111111111111111111111 111111111111111
lowQualScore : 2 22 2 55 4 4 111111111111111111111111111 4 22 4 4 222 4 77777 333 22 1 1 2 1 22 333 3333333333333 1 55555 44444 44444444444 22222222 11 44444444444444 11 11 11 11 111 666666666666666 111111 11 11111 777777777777777777777777777777777777777777777 111111 11 1111
lowQualScore : 6 0 22 0 55 0 0 999999999999999999999999999 0 11 0 0 777 0 88888 2 555 66 5 0 0 4 5 3 77 4 555 4444444444444 0 22222 3 55 6 33333 2 88888888888 2 99999999 7 44 1 7 99999999999999 0 4 3 6 11 99 11 99 00 444 8 5 4 888888888888888 555555 1 77 99 88 5 5 5 66 5 22222 4 66 4 77 66666 4 000000000000000000000000000000000000000000000 66 111111 4 11 4 4 0000 4 888 5 66 5 5 5
lowQualScore : . . .. . .. . . ........................... . .. . . ... . ..... . ... .. . . . . . . .. . ... ............. . ..... . .. . ..... . ........... . ........ . .. . . .............. . . . . .. .. .. .. .. ... . . . ............... ...... . .. .. .. . . . .. . ..... . .. . .. ..... . ............................................. .. ...... . .. . . .... . ... . .. . . .
lowQualScore : 0 0 55 0 00 0 0 000000000000000000000000000 0 00 0 0 000 0 00000 5 000 00 0 5 0 0 5 0 55 0 000 0000000000000 5 00000 0 00 0 55555 5 55555555555 5 55555555 3 00 0 3 99999999999999 2 6 0 0 00 00 00 88 00 000 0 0 2 888888888888888 444444 0 77 22 33 0 0 0 99 0 55555 0 11 4 00 00000 0 777777777777777777777777777777777777777777777 11 888888 0 00 0 4 6666 1 888 0 99 0 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTAAACCAACAAGACGTGGTNGCCGTCTTCATACTATGATTCTGAGATAAATAAGAAAAACG--ATA-GAATTCTCCTTTCAA-GAACTATGACACGTAAATTGTAAAGAATATGTACGGACTTCGTAACCAGGGGGTGCAGAAAAAAGACCCGCT---TTCTTNCCCGGACATTTATCGTANAGACTTTTGAGTGGGNATGTCCATCAGTTNGGTGGCTATTTGACANCCTCTCCATCCANCGGTGCCCCACCAGTAANGCAAAATTAAACCANTTTNNTTTACGTCTNCGCCNTAATCTGGTCAACTNNCTCTTGANGAATCCCANTTTTGAATGTACGCGTGT-TCGATTTGCACAATA-G-CTCGAATCAAAACTGTCAACTTAGACATG--ACACTA-TTGTGA-CGCATT-AATGGGGGTTGGG---CTA-TTTTGAAATATTGATTTNNTGG---TTGGGT--T-CTGTT-CTA--AGT--CAGTAA-GA-TC-A--T-A-----TGAAGAGAAA--T-CTTC-GT--C--ACAAA-GAATGGGC--T--T-C---GC--TT---CGC-T--------------A-----CG--C-TC--CGCCCATTC-TTTGT--GACG-AAG-ATTT----CTCTTC---AT-A--T-GA-TC-TTACTATTA
Reference ( gi|2 ) : ATTCCAATAACAGCATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTAAAC-AACAAGACGTGGTC-CCGTCTT-ATA--ATGAT-CTGAGATAAA-AAGAAAAACGGAATAAGAATT----TTTCAAAGAA--ATGACACGTAA-TTGTAAAACATA-GTACGGACTT-GTAACTCAGGGGTGCAGAAAAAAGA-CCGCTAAGTACTTGCC---ACA-CTATGATACAGAC-TTTGAGTAGGAATGTCCATCAATTTGGTGGC--TTTGACATCT---CCATC--ACAGT-CTC--CTAGTAAAGCAAAATT-AATCAATTTCCTTTATATC-CCA-CGTAATCTG----ACTAC--CTTGACGA--TTCAA-TTTGAATGTATGCGTGC-TCGATTTGTACAATAGGTCTGAAATCAAAACTGTCAACTCAAATATG--ACACTA-TTGTGA-TGCATT-TATGGGGAGTGGG---TTA-TTTGGAAACA---------------TTGGGT--T-CTGTT-TTA--AGT--CAGTAA-GA-TC-A--T-A-----TGAAGAGGAA--T-CTTT-GT--C--ACAAA-GAATGGGC--T--T-C---GC--TT---CGC-T--------------A-----CG--C-TC--CGCCCATTC-TTTGT--GACG-AAG-ATTT----CTTTTC---AT-A--T-GA-TC-TTACTATTA
gi|1 : TCGTAAACCAACAAGACGTGGTAGCCGTCTTCATACTATGATTCTGAGATAAATAAGAAAAACG--ATA-GAATTCTCCTTTCAA-GAACTATGACACGTAAATTGTAAAGAATATGTACGGACTTCGTAACCAGGGGGTGCAGAAAAAAGACCCGCT---TTCTTGCCCGGACATTTATCGTATAGACTTTTGAGTGGATATGTCTATCAA-TTGGTGGCTATTTGACAACC---TCATCCAACGATGCTCCACTAGTAACGCAAAATTAAACCAATTTGCTTTACATCTCCACCTTAATCTGGTCAACTACCTCTTGACGAATCTCAATTTTGAATGTATGCG-GCGTCGATTTGCAC-ATAGGATTCGAAT-AA------CAA---AAACATGACACACTATTTGCGATTGCATTAAATGGAGAGTGGGGTCTCATTTTGGAAACATTTGAGTTGAGTTGGTTGGGTGGT-C-GTT-CTA--AGT--CAGTAACGACTC-A--T-ATAGGGTGAAGTCGAAAGT-CTTC-GT--C---CAAA-GAATGGGC--T--T-C---GCTTTT---CGC-TCGGCTCTACGCCTCG-----CG--C-TC--CGCCCATCT-TTTGTACGACG-AAGTATTT----CTCTTC---AT-ACTC-GA-TC-TT
gi|7 : agaacataacccactatttttctaaaccgattcaatatactccataagtttctcacaattatggtttctaccatagttgaagaatgcgaggtttatttttctggtagcaacaatcagtgtttttgatatgtgggatgatcatgttgctaagggggcgtgtctctattatgtatctccgcaagttaatatcgcagataggattgtgttttgtggtgtgttagatgcttgcatgagtatttcatgcaaagggttacaataattacaccattcgattggcggtttgcgtgctttcaatgaaaattaacttctatatttcgatattctTCGTAAAC-AACAAGACGTGGTC-CCGTCTT-t
gi|5 : aattgaacagcgtggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTTCT---ACA-TTATTATAAAAAC-TTTGAGTAGGAATATCCATCAGTTGGATGGC--TTTAACATCTTCTCCATC--CCAGT-CCC--CCAATAAGGCAAAAT-----CACTTTCATTTACGTC-AAG-CGTAATCTG----ACTTG--CTTGAAGA--TCCAT-TTTGAATGTACGCGTGT-TCGATTTACACAATA---------T----ACCGTTATCTCAGGCTTG--ACACTT-TTGTTT-CGCATA-TATGGGGAATGGG---TGA-TTTG-----A---------------TTG-------------CTA--AGT--CAGCAA-GA-TT-A--T-A-----TGAAGAGAAA--T-CTTC-GT--C--ACGAA-GAATGGGA--T--T-C---GC--TC---CGC-T--------------C-----CG--C-TC--CGCCCATTC-TTTAT--GACG-AAG-ATTT----CTCTTC---AT-A--T-GA-TC-TTACTATTA
gi|3 : tGTGT-TCAATTTGTACAATACGTCTCAAATCAAAATTGTCAACTTAGACATG--GCACTA-TTATGA-CGCATT-AATGGGGCTTGGG---CTA-TTTTGAAATATTGATTGATTGG---TTGGGT--T-CTGTT-CTA--AGT--CAGTAA-GA-TC-A--T-A-----TGAAGAGAAA--T-CTTC-GT--C--ACAAA-AAATGGGC--T--T-C---GC--TT---TGC-T--------------ACGCTCCG--C-TC--CGCCCATTC-TTTGT--GACG-AAG-ATTT----TTCTTC---AT-A--T-GA-TC-TTACTATTAcgtaaatgtaacaccatgtacaatgaaatc
gi|13 : catcatgggttactgatattacgagTCAAAACTGTCAACTTAGACATG--ACACTC-TTGTGG-CGCATT-AATGGGGGTTGGG---CTA-TTTTGAAAaattatcgtgcaagacgacgattgtgtgttttagtgtaaaaagctcatcgtccaaaaaggtgatgataatttttagtttaaatgtgaaatacaaataaaatacagcaactgacattaactgtggtatcgtgttctttgctttgcaatgatatttgttttgtacgggtgtc
gi|4 : TGTCAACTTAGACATG--ACACTA-TTGTGA-CGCATT-AATGGGGGTTGGG---CTA-TTTTGAAATATTGATTTGATTGG--TTGGGT--T-CTGTT-CTA--AGT--CAGTGA-GA-TC-A--T-A-----GGAAGAGAAA--T-CTTT-GT--C--ACAAA-GAATGGGC--T--T-C---GC--TT----------------------------CG--C-TC--CGCCCATTC-TTTGT--GACG-AA
gi|3 : tTGGGT--TACTGATATTACGAGTAATAGTAA-GA-TC-A--T-A-----TGAAGAAAAA--T-CTTC-GT--C--ACAAA-GAATGGGC--GGAG-CGGAGC--GT---AGC-A--------------A-----AG--C-GA--AGCCCATTT-TTTGT--GACG-AAG-ATTT----CTCTTC---AT-A--T-GA-TC-TTACTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgtgaaatacaaataaaatacagcaactttaactgtggtatcgtgttcttcgctttgtaatgatatttgtgtacgggtgt
gi|5 : catcaT-TTA--CGTAATAGTAA-GA-TC-A--T-A-----TGAAGAGAAA--T-CTTC-GT--C--ATAAA-GAATGGGC--G--G-A---GC--GG---AGC-G--------------G-----AG--C-GA--ATCCCATTC-TTCGT--GACG-AAG-ATTT----CTCTTC---AT-A--T-AA-TC-TTGCTgacttagaacagaacccaaccaatcaatcaatatttcaaaatagcccaagccccattaatgcgtcataatagtgccatgtctaagttgacaattttgatttgagacgtattgtacaaattgaacacaattatcgtgcaagacgacgattgtgtgttttagtgtaaaaagctcatcgtccaaaaaggtgatgataatttttagtttaaatgtgaaatacaaataaaatacagcaactgacattaactgtggtatcgtgttctttgctttgcaatgatatttgttttgtacgggtgtc
gi|10 : tctttctacattattataaaaactttgagtaggaatatccatcagttggatggctttaacatcttctccatcccagtcccccaataaggcaaaatcactttcatttacgtcaagcgtaatctgacttgcttgaagatccattttgaatgtacgcgtgttcgatttacacaatataccgttatctcaggcttgacacttttgtttcgcatatatggggaatgggtgatttgattgctaagtcGTAA-GA-TCGA--TCA-----TGAAGAGAAA--T-CTTTCGTCCC--ACAAA-GAATGGGCGGT--G-A---GC--GG---AGCGT--------------A-----CGAACGTA--AGCCCATTCTTTTGT---ACG-AAG-ATtgtaacaccatgtacaatgaaatc
gi|1 : atggcAA-GA-TC-GAGT-A-----TGAAGAGAAA--TACTTC-GT--CGTACAAA-AGATGGGC--
gi|10 : agaacataacccactatttttctaaaccgattcaatatactccataagtttctcacaattatggtttctaccatagttgaagaatgcgaggtttatttttctggtagcaacaatcagtgtttttgatatgtgggatgatcatgttgctaagggggcgtgtctctattatgtatctccgcaagttaatatcgcagataggattgtgttttgtggtgtgttagatgcttgcatgagtatttcatgcaaagggttacaataattacaccattcgattggcggtttgcgtgctttcaatgaaaattaacttctatatttcgatattcttcgtaaaccaacaagacgtggtagccgtcttcatactatgattctgagataaataagaaaaacgatagaattctcctttcaagaactatgacacgtaaattgtaaagaatatgtacggacttcgtaaccagggggtgcagaaaaaagacccgctttcttgcccggacatttatcgtatagacttttgagtggatatgtctatcaattggtggctatttgacaacctcatccaacgatgctccactagtaacgcaaaattaaaccaatttgctttacatctccaccttaatctggtcaactacctcttgacgaatctcaattttgaatgtatgcggcgtcgatttgcacataggattcgaataacaaaaacatgacacactatttgcgattgcattaaatggagagtggggtctcattttggaaacatttgagttgagttggttgggtggtcgttctaagtcagtaacgactcatatagggtgaagtcgaaagtcttcgtccaaagaatgggcttcgcttttcgctcggctctacgcctcgcgctccA--T-CTTC-GT-----ACAAAAGAATGGGC--T--TAC---GT--TCGTACGC-T--------------C-----CG--C-TCACCGCCCATTC-TTTGTGGGACGAAAG-ATTT----CTCTTC---ATGA--TCGA-TC-TTACt
gi|4 : atggcTTC-GT--C--ACAAA-GAATGGGC--G--G-A---GC--------G-----------------A-----AG--C-GA--AGCCCATTC-TTTGT--GACA-AAG-ATTT----CTCTTC---CT-A--T-GA-TC-TCACT
gi|1 : tGCCCATTC-TTTG---GACG-AAG-ACTTTCGACTTCACCCTAT-A--T-GAGTCGTTACTgacttagaacagaacccaaccaatcaaatcaatatttcaaaatagcccaacccccattaatgcgtcacaatagtgtcatgtctaagttgacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgtgaaatacaaataaaatacagcaactttaactgtggtatcgtgttcttcgctttgtaatgatatttgtgtacgggtgt
9 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): ACATAACCCACTTTTTCAACAAATCAAATACCCCAACATCTCACAAAGAATGGATTCTTCATAGTGAAGATGCATTCTATTTTTCAGGTACTGAATACTGTTTGATTGGTTCATTTTGCAAGGAACTAAAAAATGGGCGTTTCTCAATGC
Unaligned ( gi|8 ): GAACATAACCCACTTTTTCAACCAATCAAATACCCCGAAATTTCACATAGTATATGGATTCTTCATAGTGAAGAATCGTTCTTTTTTTCCAAGTACAGAATAGTGTTCGATTGGTTCATTTTGCAAGGGGGCGTTTCTCAATTGA
Unaligned ( gi|9 ): GAACATAACCCACTTTTTCAACCAATCAATCACCCTAAAAAGAATGAATTCTTCATAATGAAGAGTCGTTCTATTTTTCGGGTACTGAATAGCGTTTGATTGGTTCATTTTGCTAGGAACCGAAAAATGGGCGTTTCTTAA
Unaligned ( gi|11 ): TCTTACGGACTTAGAACAGAGTCCAACCAATCAAATAAATCCCGCCCATATTTAATTAGTATATCATGCCTAAGTTGATTGATTTTAATTTGGAA
Unaligned ( gi|12 ): AACATAATCCATTTTTTTCAGCCAATCAAATACCCCCGAAATTTTGCAAGGAATGGAATGTTCATGGTGAAGAATTATTCT
Unaligned ( gi|14 ): TACCCCAAAATCTCACAAAGAATGGATTCTTCATAGTGAAGATTCATTCTATTTTTCAGG
Unaligned ( gi|15 ): TTTAACTGCGGTATGGTGTTCTTTGCTTTGTAGTGATATTTATTTTGCACTGGTGT
Unaligned ( gi|16 ): ATGTATTCATGCAATAACAGCATTTAGTTGGTTTTTGTTAGTGTG
Unaligned ( gi|17 ): TAGAACATAACCCACTTTTTCAACCAATCAGA
Alignments
lowQualScore : 2 22 1 11 1 1 22 2 2222 2 11 1 1 1 1 333 333 2 2 1 33 111 3333333333333 22222 3333333 4444 33 1 22 5555555555 111 11111 11 111 3333333 111 11111 11111111 55555555555555555555 11
lowQualScore : 3 44 5 88 5 5 77 0 3333 0 88 5 3 5 5 3 5 555 1 666 3 44 1 3 0 1 0 4 00 666 6 9999999999999 0 1 44444 1 22 0 8888888 4444 22 00 1 6 77 1 7 0 0 3 0000000000 9 3 6 0 77 5 0 66 5 000 99 88888 00 333 7777777 000 5 77 3 77 5 5 66666 6 5 5 5 44444444 33333333333333333333 77 55 5 6 6 9999
lowQualScore : . .. . .. . . .. . .... . .. . . . . . . ... . ... . .. . . . . . . .. ... . ............. . . ..... . .. . ....... .... .. .. . . .. . . . . . .......... . . . . .. . . .. . ... .. ..... .. ... ....... ... . .. . .. . . ..... . . . . ........ .................... .. .. . . . ....
lowQualScore : 3 33 0 00 5 5 55 0 0000 0 00 5 0 5 0 0 0 000 0 777 7 33 0 7 7 0 7 0 77 000 7 0000000000000 7 0 33333 0 00 7 0000000 0000 00 33 0 0 00 0 3 7 8 2 3333333333 3 2 7 3 99 7 1 00 7 000 00 00000 66 000 3333333 000 7 99 6 99 7 7 77777 7 7 7 7 00000000 44444444444444444444 99 77 7 7 7 3333
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTAAAC-AACAAGACGTGGTC-CCGTCTTCATACTATGATTCTGAGATAAATAAGAAAAACGGAATAAGAATTCTCCTTTCAAAGAACTATGACACGTAAATTGTAAAGNATATGTACGGACTTCGTAACCCGGGGGTGCAGAAAAAAGACCCGCTAAGTTCTTGCC---ACATT-ATNATANAGACTTT-GAGTAGGAATGTCCATCAATT-GGTGGCT--TTGACA-CCTCTCCATCC-ACGGT--CCC-CTAGTAANGCAAAATTAA-CCAATTTCCTTTACGTC-CCGC-GTAATCTG----ACTACCT--TGACGA-TCC-AATTTTGAATGTACGCGTGTTCGATTTGCACAATA-G--NTC--AAATCAAAA-CTGTCAACTTAGACATG--ACACTA-TTGTGA-CGCATT-AA---TGGGGANTGGG--CT-ATTTT-GAAATA-TTGATTT----T-GGT---TGG-GT--TCTGTTCTAAGT--CAGTAA-GA-TCATA-----TGAAG-AGAAA-TCTTCGT-CACAAAGAATGGGCTT-CGC--TT---CGCT--------------N-----CGCTC--CGCCCATTCTTTGT--GACG-AAG-ATTTCTCTTCAT-A--T-GATCTTACTATTA
Reference ( family-6772 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTAAACCAACAAGACGTGGTNGCCGTCTTCATACTATGATTCTGAGATAAATAAGAAAAACG--ATA-GAATTCTCCTTTCAA-GAACTATGACACGTAAATTGTAAAGAATATGTACGGACTTCGTAACCAGGGGGTGCAGAAAAAAGACCCGCT---TTCTTNCCCGGACATTTATCGTANAGACTTTTGAGTGGGNATGTCCATCAGTTNGGTGGCTATTTGACANCCTCTCCATCCANCGGTGCCCCACCAGTAANGCAAAATTAAACCANTTTNNTTTACGTCTNCGCCNTAATCTGGTCAACTNNCTCTTGANGAATCCCANTTTTGAATGTACGCGTGTTCGATTTGCACAATA-G--CTC--GAATCAAAA-CTGTCAACTTAGACATG--ACACTA-TTGTGA-CGCATT-AA---TGGGGGTTGGG--CT-ATTTT-GAAATA-TTGATTT--NNT-GGT---TGG-GT--TCTGTTCTAAGT--CAGTAA-GA-TCATA-----TGAAG-AGAAA-TCTTCGT-CACAAAGAATGGGCTT-CGC--TT---CGCT--------------A-----CGCTC--CGCCCATTCTTTGT--GACG-AAG-ATTTCTCTTCAT-A--T-GATCTTACTATTA
gi|1 : TCGTAAACCAACAAGACGTGGTAGCCGTCTTCATACTATGATTCTGAGATAAATAAGAAAAACG--ATA-GAATTCTCCTTTCAA-GAACTATGACACGTAAATTGTAAAGAATATGTACGGACTTCGTAACCAGGGGGTGCAGAAAAAAGACCCGCT---TTCTTGCCCGGACATTTATCGTATAGACTTTTGAGTGGATATGTCTATCAATT-GGTGGCTATTTGACAACCT---CATCCAACGATGCTCCACTAGTAACGCAAAATTAAACCAATTTGCTTTACATCTCCACCTTAATCTGGTCAACTACCTCTTGACGAATCTCAATTTTGAATGTATGCGGCGTCGATTTGCAC-ATA-GGATTC--GAAT-AA-------CAA---AAACATGACACACTATTTGCGATTGCATTAAA---TGGAGAGTGGGGTCTCATTTTGGAAACATTTGAGTTGAGTT-GGT---TGG-GTGGTC-GTTCTAAGT--CAGTAACGACTCATATAGGGTGAAGTCGAAAGTCTTCGT-C-CAAAGAATGGGCTT-CGCTTTT---CGCTCGGCTCTACGCCTCG-----CGCTC--CGCCCATCTTTTGTACGACG-AAGTATTTCTCTTCAT-ACTC-GATCTT
gi|10 : agaacataacccactatttttctaaaccgattcaatatactccataagtttctcacaattatggtttctaccatagttgaagaatgcgaggtttatttttctggtagcaacaatcagtgtttttgatatgtgggatgatcatgttgctaagggggcgtgtctctattatgtatctccgcaagttaatatcgcagataggattgtgttttgtggtgtgttagatgcttgcatgagtatttcatgcaaagggttacaataattacaccattcgattggcggtttgcgtgctttcaatgaaaattaacttctatatttcgatattctA-TCTTCGTACA-AAAGAATGGGCTTACGT--TCGTACGCT--------------C-----CGCTCACCGCCCATTCTTTGTGGGACGAAAG-ATTTCTCTTCATGA--TCGATCTTACt
gi|11 : atggcC--AAATTAAAATCAATCAACTTAGGCATG--ATA-TA-CTA-------ATT-AAATATGGG---CGGG-----ATTT-----AT--TTGATT-------GGT---TGG-AC--TCTGTTCTAAGT--CCGTAA-GA-
gi|13 : TCAAAA-CTGTCAACTTAGACATG--ACACTC-TTGTGG-CGCATT-AA---TGGGGGTTGGG--CT-ATTTT-GAAAgaa
gi|2 : TTGTAAAC-AACAAGACGTGGTC-CCGTCTT-ATA--ATGAT-CTGAGATAAA-AAGAAAAACGGAATAAGAATT----TTTCAAAGAA--ATGACACGTAA-TTGTAAAACATA-GTACGGACTT-GTAACTCAGGGGTGCAGAAAAAAGACC-GCTAAGTACTTGCC---ACACT-ATGATACAGACTTT-GAGTAGGAATGTCCATCAATTTGGTGGCT--TTGACA---TCTCCATC--ACAGT--CTC-CTAGTAAAGCAAAATTAA-TCAATTTCCTTTATATC-CCAC-GTAATCTG----ACTACCT--TGACGATTC--AATTT-GAATGTATGCGTGCTCGATTTGTACAATA-G--GTCTGAAATCAAAA-CTGTCAACTCAAATATG--ACACTA-TTGTGA-TGCATT-TA---TGGGGAGTGGG--TT-ATTTG-GAAACA----------------T---TGG-GT--TCTGTTTTAAGT--CAGTAA-GA-TCATA-----TGAAG-AGGAA-TCTTTGT-CACAAAGAATGGGCTT-CGC--TT---CGCT--------------A-----CGCTC--CGCCCATTCTTTGT--GACG-AAG-ATTTCTTTTCAT-A--T-GATCTTACTATTA
gi|3 : attccaataacagcatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTGTTCAATTTGTACAATACGT-CTC--AAATCAAAA-TTGTCAACTTAGACATG--GCACTA-TTATGA-CGCATT-AA---TGGGGCTTGGG--CT-ATTTT-GAAATA-TTGATTG--ATT-GGT---TGG-GT--TCTGTTCTAAGT--CAGTAA-GA-TCATA-----TGAAG-AGAAA-TCTTCGT-CACAAAAAATGGGCTT-CGC--TT---TGCT--------------ACGCTCCGCTC--CGCCCATTCTTTGT--GACG-AAG-ATTTTTCTTCAT-A--T-GATCTTACTATTA
gi|4 : catcatgggttactgatattacgagTGTCAACTTAGACATG--ACACTA-TTGTGA-CGCATT-AA---TGGGGGTTGGG--CT-ATTTT-GAAATA-TTGATTT--GATTGGT---TGG-GT--TCTGTTCTAAGT--CAGTGA-GA-TCATA-----GGAAG-AGAAA-TCTTTGT-CACAAAGAATGGGCTT-CGC--TT---------------------------CGCTC--CGCCCATTCTTTGT--GACG-AAaattatcgtgcaagacgacgattgtgtgttttagtgtaaaaagctcatcgtccaaaaaggtgatgataatttttagtttaaatgtgaaatacaaataaaatacagcaactgacattaactgtggtatcgtgttctttgctttgcaatgatatttgttttgtacgggtgtc
gi|5 : tTCTTTCT---ACATT-ATTATAAAAACTTT-GAGTAGGAATATCCATCAGTTGGATGGCT--TTAACATCTTCTCCATCC--CAGT--CCC-CCAATAAGGCAAAAT-----CACTTTCATTTACGTC-AAGC-GTAATCTG----ACTTGCT--TGAAGA-TCC--ATTTTGAATGTACGCGTGTTCGATTTACACAATA------------T----A-CCGTTATCTCAGGCTTG--ACACTT-TTGTTT-CGCATA-TA---TGGGGAATGGG-------------------TGATTT------GAT---TG------------CTAAGT--CAGCAA-GA-TTATA-----TGAAG-AGAAA-TCTTCGT-CACGAAGAATGGGATT-CGC--TC---CGCT--------------C-----CGCTC--CGCCCATTCTTTAT--GACG-AAG-ATTTCTCTTCAT-A--T-GATCTTACTATTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgtgaaatacaaataaaatacagcaactttaactgtggtatcgtgttcttcgctttgtaatgatatttgtgtacgggtgt
gi|5 : GATTT--CAT-TGTACATGGTGT--TACATT-TACGTAATAGTAA-GA-TCATA-----TGAAG-AGAAA-TCTTCGT-CATAAAGAATGGGCGG-AGC--GG---AGCG--------------G-----AGCGA--ATCCCATTCTTCGT--GACG-AAG-ATTTCTCTTCAT-A--T-AATCTTGCTcgtaaatgtaacaccatgtacaatgaaatc
gi|7 : tctttctacattattataaaaactttgagtaggaatatccatcagttggatggctttaacatcttctccatcccagtcccccaataaggcaaaatcactttcatttacgtcaagcgtaatctgacttgcttgaagatccattttgaatgtacgcgtgttcgatttacacaatataccgttatctcaggcttgacacttttgtttcgcatatatggggaatgggtgatttgattgctaagtcTCGTAAAC-AACAAGACGTGGTC-CCGTCTT
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): ACATAACCCACTTTTTCAACAAATCAAATACCCCAACATCTCACAAAGAATGGATTCTTCATAGTGAAGATGCATTCTATTTTTCAGGTACTGAATACTGTTTGATTGGTTCATTTTGCAAGGAACTAAAAAATGGGCGTTTCTCAATGC
Unaligned ( gi|8 ): GAACATAACCCACTTTTTCAACCAATCAAATACCCCGAAATTTCACATAGTATATGGATTCTTCATAGTGAAGAATCGTTCTTTTTTTCCAAGTACAGAATAGTGTTCGATTGGTTCATTTTGCAAGGGGGCGTTTCTCAATTGA
Unaligned ( gi|9 ): GAACATAACCCACTTTTTCAACCAATCAATCACCCTAAAAAGAATGAATTCTTCATAATGAAGAGTCGTTCTATTTTTCGGGTACTGAATAGCGTTTGATTGGTTCATTTTGCTAGGAACCGAAAAATGGGCGTTTCTTAA
Unaligned ( gi|12 ): AACATAATCCATTTTTTTCAGCCAATCAAATACCCCCGAAATTTTGCAAGGAATGGAATGTTCATGGTGAAGAATTATTCT
Unaligned ( gi|14 ): TACCCCAAAATCTCACAAAGAATGGATTCTTCATAGTGAAGATTCATTCTATTTTTCAGG
Unaligned ( gi|15 ): TTTAACTGCGGTATGGTGTTCTTTGCTTTGTAGTGATATTTATTTTGCACTGGTGT
Unaligned ( gi|16 ): ATGTATTCATGCAATAACAGCATTTAGTTGGTTTTTGTTAGTGTG
Unaligned ( gi|17 ): TAGAACATAACCCACTTTTTCAACCAATCAGA
Alignments
lowQualScore : 1 1 1 11 1 1 11 1 2222 1 11 1 1 1 1 222 222 1 1 1 1 11 3333333 22 22222 1 1 2222 11 1 1 444444444 111 11111 4444444444444 22222 666666666666666666666666 11 1111
lowQualScore : 3 3 5 88 5 5 88 5 3333 5 88 5 1 5 5 2 5 111 333 3 1 1 3 3 3 88 1111111 22 0 1 22222 0 3 0 3 8888 88 3 3 7 7 0 0 3 333333333 9 6 3 77 5 0 0 5 555 55 88888 1 5 1 3 0000000000000 99 3 6 6 00000 8 6 6 6 111111111111111111111111 99 88 6 8 8 3333
lowQualScore : . . . .. . . .. . .... . .. . . . . . . ... ... . . . . . . .. ....... .. . . ..... . . . . .... .. . . . . . . . ......... . . . .. . . . . ... .. ..... . . . . ............. .. . . . ..... . . . . ........................ .. .. . . . ....
lowQualScore : 3 3 0 00 5 5 00 5 0000 5 00 5 0 5 0 5 0 000 333 3 0 0 3 3 3 33 3333333 33 7 0 33333 7 3 7 3 3333 33 3 3 3 3 7 8 2 888888888 3 7 9 99 7 1 3 7 777 11 00000 4 7 4 2 3333333333333 22 2 7 7 00000 0 7 7 7 777777777777777777777777 22 33 7 0 0 0000
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTAAAC-AACAAGACGTGGTC-CCGTCTTCATACTATGATTCTGAGATAAATAAGAAAAACGGAATAAGAATTCTCCTTTCAAAGAACTATGACACGTAAATTGTAAAGNATATGTACGGACTTCGTAACCCGGGGGTGCAGAAAAAAGACCCGCTAAGTTCTTGCC---ACATT-ATNATANAGACTTT-GAGTAGGAATGTCCATCAATT-GG-TGGCT--TTGACA-CCT-C-TCCATC-ACGGTCCCCTAGTAANGCAAAATTAA-CCAATTTCCTTTACGTC-CCGCGT-AATCTG----ACTACCT--TGACGA-TC-CAATTTTGAATGTACGCGTGTTCGATTTGCACAATA-GG--TC--AAATCAAAA-CTGTCAACTTAGACATGACAC--TATT-GTGAC-GCATTAA---TGGGGANTGGG--CT-ATTTTG-AAATATT-GA-TT---T---TGGTTGGGT--TCTGTTCTAAGTCAGTAA-GA-TCATAT-----GAAG-AGAAA-TCTTCGT-CACAAAGAATGGGCTT-CGCTT-----CGCTC--------------CGCTC--CGCCCATTCTTTGT--GACG-AAG-ATTTCTCTTCAT-A--T-GATCTTACTATTA
Reference ( family-6772 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTAAAC-AACAAGACGTGGTC-CCGTCTTCATACTATGATTCTGAGATAAATAAGAAAAACGGAATAAGAATTCTCCTTTCAAAGAACTATGACACGTAAATTGTAAAGNATATGTACGGACTTCGTAACCCGGGGGTGCAGAAAAAAGACCCGCTAAGTTCTTGCC---ACATT-ATNATANAGACTTT-GAGTAGGAATGTCCATCAATT-GG-TGGCT--TTGACA-CCT-C-TCCATCCACGGTCCCCTAGTAANGCAAAATTAA-CCAATTTCCTTTACGTC-CCGCGT-AATCTG----ACTACCT--TGACGA-TC-CAATTTTGAATGTACGCGTGTTCGATTTGCACAATA-GN--TC--AAATCAAAA-CTGTCAACTTAGACATGACAC--TATT-GTGAC-GCATTAA---TGGGGANTGGG--CT-ATTTTG-AAATATT-GA-TT---T---TGGTTGGGT--TCTGTTCTAAGTCAGTAA-GA-TCATAT-----GAAG-AGAAA-TCTTCGT-CACAAAGAATGGGCTT-CGCTT-----CGCTN--------------CGCTC--CGCCCATTCTTTGT--GACG-AAG-ATTTCTCTTCAT-A--T-GATCTTACTATTA
gi|1 : TCGTAAACCAACAAGACGTGGTAGCCGTCTTCATACTATGATTCTGAGATAAATAAGAAAAACG--ATA-GAATTCTCCTTTCAA-GAACTATGACACGTAAATTGTAAAGAATATGTACGGACTTCGTAACCAGGGGGTGCAGAAAAAAGACCCGCT---TTCTTGCCCGGACATTTATCGTATAGACTTTTGAGTGGATATGTCTATCAATT-GG-TGGCTATTTGACAACCT-CATCCAACGATGCTCCACTAGTAACGCAAAATTAAACCAATTTGCTTTACATCTCCACCTTAATCTGGTCAACTACCTCTTGACGAATCTCAATTTTGAATGTATGCGGCGTCGATTTGCACA-TA-GGATTC--GAAT---AA-C----AA---AAACATGACACACTATTTGCGATTGCATTAAA--TGGAGAGTGGGGTCTCATTTTGGAAACATTTGAGTTGAGT---TGGTTGGGTGGTC-GTTCTAAGTCAGTAACGACTCATATAGGGTGAAGTCGAAAGTCTTCGT-C-CAAAGAATGGGCTT-CGCTTTT---CGCTCGGCTCTACGCCTCGCGCTC--CGCCCATCTTTTGTACGACG-AAGTATTTCTCTTCAT-ACTC-GATCTT
gi|10 : agaacataacccactatttttctaaaccgattcaatatactccataagtttctcacaattatggtttctaccatagttgaagaatgcgaggtttatttttctggtagcaacaatcagtgtttttgatatgtgggatgatcatgttgctaagggggcgtgtctctattatgtatctccgcaagttaatatcgcagataggattgtgttttgtggtgtgttagatgcttgcatgagtatttcatgcaaagggttacaataattacaccattcgattggcggtttgcgtgctttcaatgaaaattaacttctatatttcgatattctA-TCTTCGTACA-AAAGAATGGGCTTACGTTCGTA--CGCTC--------------CGCTCACCGCCCATTCTTTGTGGGACGAAAG-ATTTCTCTTCATGA--TCGATCTTACt
gi|11 : atggcC--AAATTAAAATCAATCAACTTAGGCATGATA---TACT-A-------ATTAAATATGGG---CGGG-----ATTT-----AT-TT-GA-TT--------GGTTGGAC--TCTGTTCTAAGTCCGTAA-GA-
gi|13 : TCAAAA-CTGTCAACTTAGACATGACAC--TCTT-GTGGC-GCATTAA---TGGGGGTTGGG--CT-ATTTTG-AAAgaa
gi|2 : TTGTAAAC-AACAAGACGTGGTC-CCGTCTT-ATA--ATGAT-CTGAGATAAA-AAGAAAAACGGAATAAGAATT----TTTCAAAGAA--ATGACACGTAA-TTGTAAAACATA-GTACGGACTT-GTAACTCAGGGGTGCAGAAAAAAGACC-GCTAAGTACTTGCC---ACACT-ATGATACAGACTTT-GAGTAGGAATGTCCATCAATTTGG-TGGCT--TTGACA---T-C-TCCATC-ACAGTCTCCTAGTAAAGCAAAATTAA-TCAATTTCCTTTATATC-CCACGT-AATCTG----ACTACCT--TGACGA-TT-CAATTT-GAATGTATGCGTGCTCGATTTGTACAATA-GG--TCTGAAATCAAAA-CTGTCAACTCAAATATGACAC--TATT-GTGAT-GCATTTA---TGGGGAGTGGG--TT-ATTTGG-AAACATT-G-----------------GGT--TCTGTTTTAAGTCAGTAA-GA-TCATAT-----GAAG-AGGAA-TCTTTGT-CACAAAGAATGGGCTT-CGCTT-----CGCTA--------------CGCTC--CGCCCATTCTTTGT--GACG-AAG-ATTTCTTTTCAT-A--T-GATCTTACTATTA
gi|3 : attccaataacagcatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTGTTCAATTTGTACAATACGTC-TC--AAATCAAAA-TTGTCAACTTAGACATGGCAC--TATT-ATGAC-GCATTAA---TGGGGCTTGGG--CT-ATTTTG-AAATATT-GA-TTGA-T---TGGTTGGGT--TCTGTTCTAAGTCAGTAA-GA-TCATAT-----GAAG-AGAAA-TCTTCGT-CACAAAAAATGGGCTT-CGCTTTGCTACGCTC--------------CGCTC--CGCCCATTCTTTGT--GACG-AAG-ATTTTTCTTCAT-A--T-GATCTTACTATTA
gi|4 : catcatgggttactgatattacgagTGTCAACTTAGACATGACAC--TATT-GTGAC-GCATTAA---TGGGGGTTGGG--CT-ATTTTG-AAATATT-GA-TT---TGATTGGTTGGGT--TCTGTTCTAAGTCAGTGA-GA-TCATAG-----GAAG-AGAAA-TCTTTGT-CACAAAGAATGGGCTT-CGCTT------------------------CGCTC--CGCCCATTCTTTGT--GACG-AAaattatcgtgcaagacgacgattgtgtgttttagtgtaaaaagctcatcgtccaaaaaggtgatgataatttttagtttaaatgtgaaatacaaataaaatacagcaactgacattaactgtggtatcgtgttctttgctttgcaatgatatttgttttgtacgggtgtc
gi|5 : tTCTTTCT---ACATT-ATTATAAAAACTTT-GAGTAGGAATATCCATCAGTT-GGATGGCT--TTAACA-TCTTC-TCCATCC-CAGTCCCCCAATAAGGCAAAAT-----CACTTTCATTTACGTC-AAGCGT-AATCTG----ACTTGCT--TGAAGA-TC-CA-TTTTGAATGTACGCGTGTTCGATTTACACAATA------------T----A-CCGTTATCTCAGGCTTGACAC--TTTT-GTTTC-GCATATA---TGGGGAATGGG---------TG-A-----------T---T---TGATTG-----------CTAAGTCAGCAA-GA-TTATAT-----GAAG-AGAAA-TCTTCGT-CACGAAGAATGGGATT-CGCTC-----CGCTC--------------CGCTC--CGCCCATTCTTTAT--GACG-AAG-ATTTCTCTTCAT-A--T-GATCTTACTATTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgtgaaatacaaataaaatacagcaactttaactgtggtatcgtgttcttcgctttgtaatgatatttgtgtacgggtgt
gi|7 : TCGTAAAC-AACAAGACGTGGTC-CCGTCTTcgtaaatgtaacaccatgtacaatgaaatc
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): ACATAACCCACTTTTTCAACAAATCAAATACCCCAACATCTCACAAAGAATGGATTCTTCATAGTGAAGATGCATTCTATTTTTCAGGTACTGAATACTGTTTGATTGGTTCATTTTGCAAGGAACTAAAAAATGGGCGTTTCTCAATGC
Unaligned ( gi|8 ): GAACATAACCCACTTTTTCAACCAATCAAATACCCCGAAATTTCACATAGTATATGGATTCTTCATAGTGAAGAATCGTTCTTTTTTTCCAAGTACAGAATAGTGTTCGATTGGTTCATTTTGCAAGGGGGCGTTTCTCAATTGA
Unaligned ( gi|9 ): GAACATAACCCACTTTTTCAACCAATCAATCACCCTAAAAAGAATGAATTCTTCATAATGAAGAGTCGTTCTATTTTTCGGGTACTGAATAGCGTTTGATTGGTTCATTTTGCTAGGAACCGAAAAATGGGCGTTTCTTAA
Unaligned ( gi|12 ): AACATAATCCATTTTTTTCAGCCAATCAAATACCCCCGAAATTTTGCAAGGAATGGAATGTTCATGGTGAAGAATTATTCT
Unaligned ( gi|14 ): TACCCCAAAATCTCACAAAGAATGGATTCTTCATAGTGAAGATTCATTCTATTTTTCAGG
Unaligned ( gi|15 ): TTTAACTGCGGTATGGTGTTCTTTGCTTTGTAGTGATATTTATTTTGCACTGGTGT
Unaligned ( gi|16 ): ATGTATTCATGCAATAACAGCATTTAGTTGGTTTTTGTTAGTGTG
Unaligned ( gi|17 ): TAGAACATAACCCACTTTTTCAACCAATCAGA
Alignments
lowQualScore : 1 1 1 11 1 1 11 1 2222 1 11 1 1 1 1 222 222 1 1 1 1 11 3333333 1 22222 1 1 2222 11 1 1 33333333 111 11111 4444444444444 22222 555555555555555555555555 11 1111
lowQualScore : 3 3 5 88 5 5 88 5 3333 5 88 5 1 5 5 2 5 111 333 3 1 1 3 3 3 88 1111111 3 0 1 22222 0 3 0 3 8888 88 3 3 7 7 0 0 3 22222222 9 6 3 77 5 0 0 5 555 55 88888 1 5 1 3 0000000000000 99 3 6 6 00000 8 6 6 6 666666666666666666666666 99 88 6 8 8 3333
lowQualScore : . . . .. . . .. . .... . .. . . . . . . ... ... . . . . . . .. ....... . . . ..... . . . . .... .. . . . . . . . ........ . . . .. . . . . ... .. ..... . . . . ............. .. . . . ..... . . . . ........................ .. .. . . . ....
lowQualScore : 3 3 0 00 5 5 00 5 0000 5 00 5 0 5 0 5 0 000 333 3 0 0 3 3 3 33 3333333 3 7 0 33333 7 3 7 3 3333 33 3 3 3 3 7 8 2 88888888 3 7 9 99 7 1 3 7 777 11 00000 4 7 4 2 3333333333333 22 2 7 7 00000 0 7 7 7 777777777777777777777777 22 33 7 0 0 0000
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTAAAC-AACAAGACGTGGTC-CCGTCTTCATACTATGATTCTGAGATAAATAAGAAAAACGGAATAAGAATTCTCCTTTCAAAGAACTATGACACGTAAATTGTAAAGNATATGTACGGACTTCGTAACCCGGGGGTGCAGAAAAAAGACCCGCTAAGTTCTTGCC---ACATT-ATNATANAGACTTT-GAGTAGGAATGTCCATCAATT-GG-TGGCT--TTGACA-CCT-C-TCCATC-ACGGTCCCCTAGTAANGCAAAATTAA-CCAATTTCCTTTACGTC-CCGCGT-AATCTG----ACTACCT--TGACGA-TC-CAATTTTGAATGTACGCGTGTTCGATTTGCACAATAGG--TCT-AAATCAAAA-CTGTCAACTTAGACATGACAC--TATT-GTGAC-GCATTAA---TGGGGANTGGG--CT-ATTTTG-AAATATT-GA-TT---T---TGGTTGGGT--TCTGTTCTAAGTCAGTAA-GA-TCATAT-----GAAG-AGAAA-TCTTCGT-CACAAAGAATGGGCTT-CGCTT-----CGCTC--------------CGCTC--CGCCCATTCTTTGT--GACG-AAG-ATTTCTCTTCAT-A--T-GATCTTACTATTA
Reference ( family-6772 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTAAAC-AACAAGACGTGGTC-CCGTCTTCATACTATGATTCTGAGATAAATAAGAAAAACGGAATAAGAATTCTCCTTTCAAAGAACTATGACACGTAAATTGTAAAGNATATGTACGGACTTCGTAACCCGGGGGTGCAGAAAAAAGACCCGCTAAGTTCTTGCC---ACATT-ATNATANAGACTTT-GAGTAGGAATGTCCATCAATT-GG-TGGCT--TTGACA-CCT-C-TCCATC-ACGGTCCCCTAGTAANGCAAAATTAA-CCAATTTCCTTTACGTC-CCGCGT-AATCTG----ACTACCT--TGACGA-TC-CAATTTTGAATGTACGCGTGTTCGATTTGCACAATAGG--TC--AAATCAAAA-CTGTCAACTTAGACATGACAC--TATT-GTGAC-GCATTAA---TGGGGANTGGG--CT-ATTTTG-AAATATT-GA-TT---T---TGGTTGGGT--TCTGTTCTAAGTCAGTAA-GA-TCATAT-----GAAG-AGAAA-TCTTCGT-CACAAAGAATGGGCTT-CGCTT-----CGCTC--------------CGCTC--CGCCCATTCTTTGT--GACG-AAG-ATTTCTCTTCAT-A--T-GATCTTACTATTA
gi|1 : TCGTAAACCAACAAGACGTGGTAGCCGTCTTCATACTATGATTCTGAGATAAATAAGAAAAACG--ATA-GAATTCTCCTTTCAA-GAACTATGACACGTAAATTGTAAAGAATATGTACGGACTTCGTAACCAGGGGGTGCAGAAAAAAGACCCGCT---TTCTTGCCCGGACATTTATCGTATAGACTTTTGAGTGGATATGTCTATCAATT-GG-TGGCTATTTGACAACCT-CATCCAACGATGCTCCACTAGTAACGCAAAATTAAACCAATTTGCTTTACATCTCCACCTTAATCTGGTCAACTACCTCTTGACGAATCTCAATTTTGAATGTATGCGGCGTCGATTTGCACA-TAGGATTC--GAAT---AA-C----AA---AAACATGACACACTATTTGCGATTGCATTAAA--TGGAGAGTGGGGTCTCATTTTGGAAACATTTGAGTTGAGT---TGGTTGGGTGGTC-GTTCTAAGTCAGTAACGACTCATATAGGGTGAAGTCGAAAGTCTTCGT-C-CAAAGAATGGGCTT-CGCTTTT---CGCTCGGCTCTACGCCTCGCGCTC--CGCCCATCTTTTGTACGACG-AAGTATTTCTCTTCAT-ACTC-GATCTT
gi|10 : agaacataacccactatttttctaaaccgattcaatatactccataagtttctcacaattatggtttctaccatagttgaagaatgcgaggtttatttttctggtagcaacaatcagtgtttttgatatgtgggatgatcatgttgctaagggggcgtgtctctattatgtatctccgcaagttaatatcgcagataggattgtgttttgtggtgtgttagatgcttgcatgagtatttcatgcaaagggttacaataattacaccattcgattggcggtttgcgtgctttcaatgaaaattaacttctatatttcgatattctA-TCTTCGTACA-AAAGAATGGGCTTACGTTCGTA--CGCTC--------------CGCTCACCGCCCATTCTTTGTGGGACGAAAG-ATTTCTCTTCATGA--TCGATCTTACt
gi|11 : atggcC--AAATTAAAATCAATCAACTTAGGCATGATA---TACT-A-------ATTAAATATGGG---CGGG-----ATTT-----AT-TT-GA-TT--------GGTTGGAC--TCTGTTCTAAGTCCGTAA-GA-
gi|13 : TCAAAA-CTGTCAACTTAGACATGACAC--TCTT-GTGGC-GCATTAA---TGGGGGTTGGG--CT-ATTTTG-AAAgaa
gi|2 : TTGTAAAC-AACAAGACGTGGTC-CCGTCTT-ATA--ATGAT-CTGAGATAAA-AAGAAAAACGGAATAAGAATT----TTTCAAAGAA--ATGACACGTAA-TTGTAAAACATA-GTACGGACTT-GTAACTCAGGGGTGCAGAAAAAAGACC-GCTAAGTACTTGCC---ACACT-ATGATACAGACTTT-GAGTAGGAATGTCCATCAATTTGG-TGGCT--TTGACA---T-C-TCCATC-ACAGTCTCCTAGTAAAGCAAAATTAA-TCAATTTCCTTTATATC-CCACGT-AATCTG----ACTACCT--TGACGA-TT-CAATTT-GAATGTATGCGTGCTCGATTTGTACAATAGG--TCTGAAATCAAAA-CTGTCAACTCAAATATGACAC--TATT-GTGAT-GCATTTA---TGGGGAGTGGG--TT-ATTTGG-AAACATT-G-----------------GGT--TCTGTTTTAAGTCAGTAA-GA-TCATAT-----GAAG-AGGAA-TCTTTGT-CACAAAGAATGGGCTT-CGCTT-----CGCTA--------------CGCTC--CGCCCATTCTTTGT--GACG-AAG-ATTTCTTTTCAT-A--T-GATCTTACTATTA
gi|3 : attccaataacagcatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTGTTCAATTTGTACAATACG--TCTCAAATCAAAA-TTGTCAACTTAGACATGGCAC--TATT-ATGAC-GCATTAA---TGGGGCTTGGG--CT-ATTTTG-AAATATT-GA-TTGA-T---TGGTTGGGT--TCTGTTCTAAGTCAGTAA-GA-TCATAT-----GAAG-AGAAA-TCTTCGT-CACAAAAAATGGGCTT-CGCTTTGCTACGCTC--------------CGCTC--CGCCCATTCTTTGT--GACG-AAG-ATTTTTCTTCAT-A--T-GATCTTACTATTA
gi|4 : catcatgggttactgatattacgagTGTCAACTTAGACATGACAC--TATT-GTGAC-GCATTAA---TGGGGGTTGGG--CT-ATTTTG-AAATATT-GA-TT---TGATTGGTTGGGT--TCTGTTCTAAGTCAGTGA-GA-TCATAG-----GAAG-AGAAA-TCTTTGT-CACAAAGAATGGGCTT-CGCTT------------------------CGCTC--CGCCCATTCTTTGT--GACG-AAaattatcgtgcaagacgacgattgtgtgttttagtgtaaaaagctcatcgtccaaaaaggtgatgataatttttagtttaaatgtgaaatacaaataaaatacagcaactgacattaactgtggtatcgtgttctttgctttgcaatgatatttgttttgtacgggtgtc
gi|5 : tTCTTTCT---ACATT-ATTATAAAAACTTT-GAGTAGGAATATCCATCAGTT-GGATGGCT--TTAACA-TCTTC-TCCATC-CCAGTCCCCCAATAAGGCAAAAT-----CACTTTCATTTACGTC-AAGCGT-AATCTG----ACTTGCT--TGAAGA-TC-CA-TTTTGAATGTACGCGTGTTCGATTTACACAATA-----------T----A-CCGTTATCTCAGGCTTGACAC--TTTT-GTTTC-GCATATA---TGGGGAATGGG---------TG-A-----------T---T---TGATTG-----------CTAAGTCAGCAA-GA-TTATAT-----GAAG-AGAAA-TCTTCGT-CACGAAGAATGGGATT-CGCTC-----CGCTC--------------CGCTC--CGCCCATTCTTTAT--GACG-AAG-ATTTCTCTTCAT-A--T-GATCTTACTATTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgtgaaatacaaataaaatacagcaactttaactgtggtatcgtgttcttcgctttgtaatgatatttgtgtacgggtgt
gi|7 : TCGTAAAC-AACAAGACGTGGTC-CCGTCTTcgtaaatgtaacaccatgtacaatgaaatc
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): ACATAACCCACTTTTTCAACAAATCAAATACCCCAACATCTCACAAAGAATGGATTCTTCATAGTGAAGATGCATTCTATTTTTCAGGTACTGAATACTGTTTGATTGGTTCATTTTGCAAGGAACTAAAAAATGGGCGTTTCTCAATGC
Unaligned ( gi|8 ): GAACATAACCCACTTTTTCAACCAATCAAATACCCCGAAATTTCACATAGTATATGGATTCTTCATAGTGAAGAATCGTTCTTTTTTTCCAAGTACAGAATAGTGTTCGATTGGTTCATTTTGCAAGGGGGCGTTTCTCAATTGA
Unaligned ( gi|9 ): GAACATAACCCACTTTTTCAACCAATCAATCACCCTAAAAAGAATGAATTCTTCATAATGAAGAGTCGTTCTATTTTTCGGGTACTGAATAGCGTTTGATTGGTTCATTTTGCTAGGAACCGAAAAATGGGCGTTTCTTAA
Unaligned ( gi|12 ): AACATAATCCATTTTTTTCAGCCAATCAAATACCCCCGAAATTTTGCAAGGAATGGAATGTTCATGGTGAAGAATTATTCT
Unaligned ( gi|14 ): TACCCCAAAATCTCACAAAGAATGGATTCTTCATAGTGAAGATTCATTCTATTTTTCAGG
Unaligned ( gi|15 ): TTTAACTGCGGTATGGTGTTCTTTGCTTTGTAGTGATATTTATTTTGCACTGGTGT
Unaligned ( gi|16 ): ATGTATTCATGCAATAACAGCATTTAGTTGGTTTTTGTTAGTGTG
Unaligned ( gi|17 ): TAGAACATAACCCACTTTTTCAACCAATCAGA
Alignments
lowQualScore : 1 1 1 11 1 1 11 1 2222 1 11 1 1 1 1 222 222 1 1 1 1 11 333 1 1 22222 1 1 2222 11 1 1 3333333 111 11111 4444444444444 22222 555555555555555555555555 11 1111
lowQualScore : 3 3 5 88 5 5 88 5 3333 5 88 5 1 5 5 2 5 111 333 3 1 1 3 3 3 88 777 3 3 0 1 22222 0 3 0 3 8888 88 3 3 7 7 0 0 3 1111111 1 6 77 5 0 0 5 555 55 88888 1 5 1 3 0000000000000 99 3 6 6 00000 8 6 6 6 666666666666666666666666 99 88 6 8 8 3333
lowQualScore : . . . .. . . .. . .... . .. . . . . . . ... ... . . . . . . .. ... . . . . ..... . . . . .... .. . . . . . . . ....... . . .. . . . . ... .. ..... . . . . ............. .. . . . ..... . . . . ........................ .. .. . . . ....
lowQualScore : 3 3 0 00 5 5 00 5 0000 5 00 5 0 5 0 5 0 000 333 3 0 0 3 3 3 33 000 3 3 7 0 33333 7 3 7 3 3333 33 3 3 3 3 7 8 2 0000000 0 7 99 7 1 3 7 777 11 00000 4 7 4 2 3333333333333 22 2 7 7 00000 0 7 7 7 777777777777777777777777 22 33 7 0 0 0000
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTAAAC-AACAAGACGTGGTC-CCGTCTTCATACTATGATTCTGAGATAAATAAGAAAAACGGAATAAGAATTCTCCTTTCAAAGAACTATGACACGTAAATTGTAAAGNATATGTACGGACTTCGTAACCCGGGGGTGCAGAAAAAAGACCCGCTAAGTTCTTGCC---ACATT-ATNATANAGACTTT-GAGTAGGAATGTCCATCAATT-GG-TGGCT--TTGACA-CCTC-TCCATC-ACGGTCCCCTAGTAANGCAAAATTAA-CCAATTTCCTTTACGTC-CCGCGT-AATCTG----ACTACCT--TGACGA-TC-CAATTTTGAATGTACGCGTGTTCGATTTGCACAATAGGTCT-AAATCAAAA-CTGTCAACTTAGACATGACAC--TATT-GTGAC-GCATTAA---TGGGGANTGGG--CT-ATTTTG-AAATATT-GA-TT---T---TGGTTGGGT--TCTGTTCTAAGTCAGTAA-GA-TCATAT-----GAAG-AGAAA-TCTTCGT-CACAAAGAATGGGCTT-CGCTT-----CGCTC--------------CGCTC--CGCCCATTCTTTGT--GACG-AAG-ATTTCTCTTCAT-A--T-GATCTTACTATTA
Reference ( family-6772 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTAAAC-AACAAGACGTGGTC-CCGTCTTCATACTATGATTCTGAGATAAATAAGAAAAACGGAATAAGAATTCTCCTTTCAAAGAACTATGACACGTAAATTGTAAAGNATATGTACGGACTTCGTAACCCGGGGGTGCAGAAAAAAGACCCGCTAAGTTCTTGCC---ACATT-ATNATANAGACTTT-GAGTAGGAATGTCCATCAATT-GG-TGGCT--TTGACA-CCTC-TCCATC-ACGGTCCCCTAGTAANGCAAAATTAA-CCAATTTCCTTTACGTC-CCGCGT-AATCTG----ACTACCT--TGACGA-TC-CAATTTTGAATGTACGCGTGTTCGATTTGCACAATAGGTCT-AAATCAAAA-CTGTCAACTTAGACATGACAC--TATT-GTGAC-GCATTAA---TGGGGANTGGG--CT-ATTTTG-AAATATT-GA-TT---T---TGGTTGGGT--TCTGTTCTAAGTCAGTAA-GA-TCATAT-----GAAG-AGAAA-TCTTCGT-CACAAAGAATGGGCTT-CGCTT-----CGCTC--------------CGCTC--CGCCCATTCTTTGT--GACG-AAG-ATTTCTCTTCAT-A--T-GATCTTACTATTA
gi|1 : TCGTAAACCAACAAGACGTGGTAGCCGTCTTCATACTATGATTCTGAGATAAATAAGAAAAACG--ATA-GAATTCTCCTTTCAA-GAACTATGACACGTAAATTGTAAAGAATATGTACGGACTTCGTAACCAGGGGGTGCAGAAAAAAGACCCGCT---TTCTTGCCCGGACATTTATCGTATAGACTTTTGAGTGGATATGTCTATCAATT-GG-TGGCTATTTGACAACCTCATCCAACGATGCTCCACTAGTAACGCAAAATTAAACCAATTTGCTTTACATCTCCACCTTAATCTGGTCAACTACCTCTTGACGAATCTCAATTTTGAATGTATGCGGCGTCGATTTGCACA-TAGG-----ATTCGAA---TAACAA---AAACATGACACACTATTTGCGATTGCATTAAA--TGGAGAGTGGGGTCTCATTTTGGAAACATTTGAGTTGAGT---TGGTTGGGTGGTC-GTTCTAAGTCAGTAACGACTCATATAGGGTGAAGTCGAAAGTCTTCGT-C-CAAAGAATGGGCTT-CGCTTTT---CGCTCGGCTCTACGCCTCGCGCTC--CGCCCATCTTTTGTACGACG-AAGTATTTCTCTTCAT-ACTC-GATCTT
gi|10 : agaacataacccactatttttctaaaccgattcaatatactccataagtttctcacaattatggtttctaccatagttgaagaatgcgaggtttatttttctggtagcaacaatcagtgtttttgatatgtgggatgatcatgttgctaagggggcgtgtctctattatgtatctccgcaagttaatatcgcagataggattgtgttttgtggtgtgttagatgcttgcatgagtatttcatgcaaagggttacaataattacaccattcgattggcggtttgcgtgctttcaatgaaaattaacttctatatttcgatattctA-TCTTCGTACA-AAAGAATGGGCTTACGTTCGTA--CGCTC--------------CGCTCACCGCCCATTCTTTGTGGGACGAAAG-ATTTCTCTTCATGA--TCGATCTTACt
gi|11 : atggcTCC-AAATTAAAATCAATCAACTTAGGCATGATA---TACT-A-------ATTAAATATGGG---CGGG-----ATTT-----AT-TT-GA-TT--------GGTTGGAC--TCTGTTCTAAGTCCGTAA-GA-
gi|13 : TCAAAA-CTGTCAACTTAGACATGACAC--TCTT-GTGGC-GCATTAA---TGGGGGTTGGG--CT-ATTTTG-AAAa
gi|2 : TTGTAAAC-AACAAGACGTGGTC-CCGTCTT-ATA--ATGAT-CTGAGATAAA-AAGAAAAACGGAATAAGAATT----TTTCAAAGAA--ATGACACGTAA-TTGTAAAACATA-GTACGGACTT-GTAACTCAGGGGTGCAGAAAAAAGACC-GCTAAGTACTTGCC---ACACT-ATGATACAGACTTT-GAGTAGGAATGTCCATCAATTTGG-TGGCT--TTGACA---TC-TCCATC-ACAGTCTCCTAGTAAAGCAAAATTAA-TCAATTTCCTTTATATC-CCACGT-AATCTG----ACTACCT--TGACGA-TT-CAATTT-GAATGTATGCGTGCTCGATTTGTACAATAGGTCTGAAATCAAAA-CTGTCAACTCAAATATGACAC--TATT-GTGAT-GCATTTA---TGGGGAGTGGG--TT-ATTTGG-AAACATT-G-----------------GGT--TCTGTTTTAAGTCAGTAA-GA-TCATAT-----GAAG-AGGAA-TCTTTGT-CACAAAGAATGGGCTT-CGCTT-----CGCTA--------------CGCTC--CGCCCATTCTTTGT--GACG-AAG-ATTTCTTTTCAT-A--T-GATCTTACTATTA
gi|3 : attccaataacagcatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTGTTCAATTTGTACAATACGTCTCAAATCAAAA-TTGTCAACTTAGACATGGCAC--TATT-ATGAC-GCATTAA---TGGGGCTTGGG--CT-ATTTTG-AAATATT-GA-TTGA-T---TGGTTGGGT--TCTGTTCTAAGTCAGTAA-GA-TCATAT-----GAAG-AGAAA-TCTTCGT-CACAAAAAATGGGCTT-CGCTTTGCTACGCTC--------------CGCTC--CGCCCATTCTTTGT--GACG-AAG-ATTTTTCTTCAT-A--T-GATCTTACTATTA
gi|4 : catcatgggttactgatattacgagTGTCAACTTAGACATGACAC--TATT-GTGAC-GCATTAA---TGGGGGTTGGG--CT-ATTTTG-AAATATT-GA-TT---TGATTGGTTGGGT--TCTGTTCTAAGTCAGTGA-GA-TCATAG-----GAAG-AGAAA-TCTTTGT-CACAAAGAATGGGCTT-CGCTT------------------------CGCTC--CGCCCATTCTTTGT--GACG-AAaattatcgtgcaagacgacgattgtgtgttttagtgtaaaaagctcatcgtccaaaaaggtgatgataatttttagtttaaatgtgaaatacaaataaaatacagcaactgacattaactgtggtatcgtgttctttgctttgcaatgatatttgttttgtacgggtgtc
gi|5 : tTCTTTCT---ACATT-ATTATAAAAACTTT-GAGTAGGAATATCCATCAGTT-GGATGGCT--TTAACATCTTC-TCCATC-CCAGTCCCCCAATAAGGCAAAAT-----CACTTTCATTTACGTC-AAGCGT-AATCTG----ACTTGCT--TGAAGA-TC-C-ATTTTGAATGTACGCGTGTTCGATTTACACAATA--T-----------A-CCGTTATCTCAGGCTTGACAC--TTTT-GTTTC-GCATATA---TGGGGAATGGG---------TG-A-----------T---T---TGATTG-----------CTAAGTCAGCAA-GA-TTATAT-----GAAG-AGAAA-TCTTCGT-CACGAAGAATGGGATT-CGCTC-----CGCTC--------------CGCTC--CGCCCATTCTTTAT--GACG-AAG-ATTTCTCTTCAT-A--T-GATCTTACTATTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgtgaaatacaaataaaatacagcaactttaactgtggtatcgtgttcttcgctttgtaatgatatttgtgtacgggtgt
gi|7 : TCGTAAAC-AACAAGACGTGGTC-CCGTCTTcgtaaatgtaacaccatgtacaatgaaatc
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): ACATAACCCACTTTTTCAACAAATCAAATACCCCAACATCTCACAAAGAATGGATTCTTCATAGTGAAGATGCATTCTATTTTTCAGGTACTGAATACTGTTTGATTGGTTCATTTTGCAAGGAACTAAAAAATGGGCGTTTCTCAATGC
Unaligned ( gi|8 ): GAACATAACCCACTTTTTCAACCAATCAAATACCCCGAAATTTCACATAGTATATGGATTCTTCATAGTGAAGAATCGTTCTTTTTTTCCAAGTACAGAATAGTGTTCGATTGGTTCATTTTGCAAGGGGGCGTTTCTCAATTGA
Unaligned ( gi|9 ): GAACATAACCCACTTTTTCAACCAATCAATCACCCTAAAAAGAATGAATTCTTCATAATGAAGAGTCGTTCTATTTTTCGGGTACTGAATAGCGTTTGATTGGTTCATTTTGCTAGGAACCGAAAAATGGGCGTTTCTTAA
Unaligned ( gi|12 ): AACATAATCCATTTTTTTCAGCCAATCAAATACCCCCGAAATTTTGCAAGGAATGGAATGTTCATGGTGAAGAATTATTCT
Unaligned ( gi|14 ): TACCCCAAAATCTCACAAAGAATGGATTCTTCATAGTGAAGATTCATTCTATTTTTCAGG
Unaligned ( gi|15 ): TTTAACTGCGGTATGGTGTTCTTTGCTTTGTAGTGATATTTATTTTGCACTGGTGT
Unaligned ( gi|16 ): ATGTATTCATGCAATAACAGCATTTAGTTGGTTTTTGTTAGTGTG
Unaligned ( gi|17 ): TAGAACATAACCCACTTTTTCAACCAATCAGA
Alignments
lowQualScore : 1 1 1 11 1 1 11 1 2222 1 11 1 1 1 1 222 222 1 1 1 1 11 333 1 1 22222 1 1 2222 11 1 1 3333333 111 11111 4444444444444 22222 555555555555555555555555 11 1111
lowQualScore : 3 3 5 88 5 5 88 5 3333 5 88 5 1 5 5 2 5 111 333 3 1 1 3 3 3 88 777 3 3 0 1 22222 0 3 0 3 8888 88 3 3 7 7 0 0 3 1111111 1 6 77 5 0 0 5 555 55 88888 1 5 1 3 0000000000000 99 3 6 6 00000 8 6 6 6 666666666666666666666666 99 88 6 8 8 3333
lowQualScore : . . . .. . . .. . .... . .. . . . . . . ... ... . . . . . . .. ... . . . . ..... . . . . .... .. . . . . . . . ....... . . .. . . . . ... .. ..... . . . . ............. .. . . . ..... . . . . ........................ .. .. . . . ....
lowQualScore : 3 3 0 00 5 5 00 5 0000 5 00 5 0 5 0 5 0 000 333 3 0 0 3 3 3 33 000 3 3 7 0 33333 7 3 7 3 3333 33 3 3 3 3 7 8 2 0000000 0 7 99 7 1 3 7 777 11 00000 4 7 4 2 3333333333333 22 2 7 7 00000 0 7 7 7 777777777777777777777777 22 33 7 0 0 0000
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTAAAC-AACAAGACGTGGTC-CCGTCTTCATACTATGATTCTGAGATAAATAAGAAAAACGGAATAAGAATTCTCCTTTCAAAGAACTATGACACGTAAATTGTAAAGNATATGTACGGACTTCGTAACCCGGGGGTGCAGAAAAAAGACCCGCTAAGTTCTTGCC---ACATT-ATNATANAGACTTT-GAGTAGGAATGTCCATCAATT-GG-TGGCT--TTGACA-CCTC-TCCATC-ACGGTCCCCTAGTAANGCAAAATTAA-CCAATTTCCTTTACGTC-CCGCGT-AATCTG----ACTACCT--TGACGA-TC-CAATTTTGAATGTACGCGTGTTCGATTTGCACAATAGGTCT-AAATCAAAA-CTGTCAACTTAGACATGACAC--TATT-GTGAC-GCATTAA---TGGGGANTGGG--CT-ATTTTG-AAATATT-GA-TT---T---TGGTTGGGT--TCTGTTCTAAGTCAGTAA-GA-TCATAT-----GAAG-AGAAA-TCTTCGT-CACAAAGAATGGGCTT-CGCTT-----CGCTC--------------CGCTC--CGCCCATTCTTTGT--GACG-AAG-ATTTCTCTTCAT-A--T-GATCTTACTATTA
Reference ( family-6772 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTAAAC-AACAAGACGTGGTC-CCGTCTTCATACTATGATTCTGAGATAAATAAGAAAAACGGAATAAGAATTCTCCTTTCAAAGAACTATGACACGTAAATTGTAAAGNATATGTACGGACTTCGTAACCCGGGGGTGCAGAAAAAAGACCCGCTAAGTTCTTGCC---ACATT-ATNATANAGACTTT-GAGTAGGAATGTCCATCAATT-GG-TGGCT--TTGACA-CCTC-TCCATC-ACGGTCCCCTAGTAANGCAAAATTAA-CCAATTTCCTTTACGTC-CCGCGT-AATCTG----ACTACCT--TGACGA-TC-CAATTTTGAATGTACGCGTGTTCGATTTGCACAATAGGTCT-AAATCAAAA-CTGTCAACTTAGACATGACAC--TATT-GTGAC-GCATTAA---TGGGGANTGGG--CT-ATTTTG-AAATATT-GA-TT---T---TGGTTGGGT--TCTGTTCTAAGTCAGTAA-GA-TCATAT-----GAAG-AGAAA-TCTTCGT-CACAAAGAATGGGCTT-CGCTT-----CGCTC--------------CGCTC--CGCCCATTCTTTGT--GACG-AAG-ATTTCTCTTCAT-A--T-GATCTTACTATTA
gi|1 : TCGTAAACCAACAAGACGTGGTAGCCGTCTTCATACTATGATTCTGAGATAAATAAGAAAAACG--ATA-GAATTCTCCTTTCAA-GAACTATGACACGTAAATTGTAAAGAATATGTACGGACTTCGTAACCAGGGGGTGCAGAAAAAAGACCCGCT---TTCTTGCCCGGACATTTATCGTATAGACTTTTGAGTGGATATGTCTATCAATT-GG-TGGCTATTTGACAACCTCATCCAACGATGCTCCACTAGTAACGCAAAATTAAACCAATTTGCTTTACATCTCCACCTTAATCTGGTCAACTACCTCTTGACGAATCTCAATTTTGAATGTATGCGGCGTCGATTTGCACA-TAGG-----ATTCGAA---TAACAA---AAACATGACACACTATTTGCGATTGCATTAAA--TGGAGAGTGGGGTCTCATTTTGGAAACATTTGAGTTGAGT---TGGTTGGGTGGTC-GTTCTAAGTCAGTAACGACTCATATAGGGTGAAGTCGAAAGTCTTCGT-C-CAAAGAATGGGCTT-CGCTTTT---CGCTCGGCTCTACGCCTCGCGCTC--CGCCCATCTTTTGTACGACG-AAGTATTTCTCTTCAT-ACTC-GATCTT
gi|10 : agaacataacccactatttttctaaaccgattcaatatactccataagtttctcacaattatggtttctaccatagttgaagaatgcgaggtttatttttctggtagcaacaatcagtgtttttgatatgtgggatgatcatgttgctaagggggcgtgtctctattatgtatctccgcaagttaatatcgcagataggattgtgttttgtggtgtgttagatgcttgcatgagtatttcatgcaaagggttacaataattacaccattcgattggcggtttgcgtgctttcaatgaaaattaacttctatatttcgatattctA-TCTTCGTACA-AAAGAATGGGCTTACGTTCGTA--CGCTC--------------CGCTCACCGCCCATTCTTTGTGGGACGAAAG-ATTTCTCTTCATGA--TCGATCTTACt
gi|11 : atggcTCC-AAATTAAAATCAATCAACTTAGGCATGATA---TACT-A-------ATTAAATATGGG---CGGG-----ATTT-----AT-TT-GA-TT--------GGTTGGAC--TCTGTTCTAAGTCCGTAA-GA-
gi|13 : TCAAAA-CTGTCAACTTAGACATGACAC--TCTT-GTGGC-GCATTAA---TGGGGGTTGGG--CT-ATTTTG-AAAa
gi|2 : TTGTAAAC-AACAAGACGTGGTC-CCGTCTT-ATA--ATGAT-CTGAGATAAA-AAGAAAAACGGAATAAGAATT----TTTCAAAGAA--ATGACACGTAA-TTGTAAAACATA-GTACGGACTT-GTAACTCAGGGGTGCAGAAAAAAGACC-GCTAAGTACTTGCC---ACACT-ATGATACAGACTTT-GAGTAGGAATGTCCATCAATTTGG-TGGCT--TTGACA---TC-TCCATC-ACAGTCTCCTAGTAAAGCAAAATTAA-TCAATTTCCTTTATATC-CCACGT-AATCTG----ACTACCT--TGACGA-TT-CAATTT-GAATGTATGCGTGCTCGATTTGTACAATAGGTCTGAAATCAAAA-CTGTCAACTCAAATATGACAC--TATT-GTGAT-GCATTTA---TGGGGAGTGGG--TT-ATTTGG-AAACATT-G-----------------GGT--TCTGTTTTAAGTCAGTAA-GA-TCATAT-----GAAG-AGGAA-TCTTTGT-CACAAAGAATGGGCTT-CGCTT-----CGCTA--------------CGCTC--CGCCCATTCTTTGT--GACG-AAG-ATTTCTTTTCAT-A--T-GATCTTACTATTA
gi|3 : attccaataacagcatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTGTTCAATTTGTACAATACGTCTCAAATCAAAA-TTGTCAACTTAGACATGGCAC--TATT-ATGAC-GCATTAA---TGGGGCTTGGG--CT-ATTTTG-AAATATT-GA-TTGA-T---TGGTTGGGT--TCTGTTCTAAGTCAGTAA-GA-TCATAT-----GAAG-AGAAA-TCTTCGT-CACAAAAAATGGGCTT-CGCTTTGCTACGCTC--------------CGCTC--CGCCCATTCTTTGT--GACG-AAG-ATTTTTCTTCAT-A--T-GATCTTACTATTA
gi|4 : catcatgggttactgatattacgagTGTCAACTTAGACATGACAC--TATT-GTGAC-GCATTAA---TGGGGGTTGGG--CT-ATTTTG-AAATATT-GA-TT---TGATTGGTTGGGT--TCTGTTCTAAGTCAGTGA-GA-TCATAG-----GAAG-AGAAA-TCTTTGT-CACAAAGAATGGGCTT-CGCTT------------------------CGCTC--CGCCCATTCTTTGT--GACG-AAaattatcgtgcaagacgacgattgtgtgttttagtgtaaaaagctcatcgtccaaaaaggtgatgataatttttagtttaaatgtgaaatacaaataaaatacagcaactgacattaactgtggtatcgtgttctttgctttgcaatgatatttgttttgtacgggtgtc
gi|5 : tTCTTTCT---ACATT-ATTATAAAAACTTT-GAGTAGGAATATCCATCAGTT-GGATGGCT--TTAACATCTTC-TCCATC-CCAGTCCCCCAATAAGGCAAAAT-----CACTTTCATTTACGTC-AAGCGT-AATCTG----ACTTGCT--TGAAGA-TC-C-ATTTTGAATGTACGCGTGTTCGATTTACACAATA--T-----------A-CCGTTATCTCAGGCTTGACAC--TTTT-GTTTC-GCATATA---TGGGGAATGGG---------TG-A-----------T---T---TGATTG-----------CTAAGTCAGCAA-GA-TTATAT-----GAAG-AGAAA-TCTTCGT-CACGAAGAATGGGATT-CGCTC-----CGCTC--------------CGCTC--CGCCCATTCTTTAT--GACG-AAG-ATTTCTCTTCAT-A--T-GATCTTACTATTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgtgaaatacaaataaaatacagcaactttaactgtggtatcgtgttcttcgctttgtaatgatatttgtgtacgggtgt
gi|7 : TCGTAAAC-AACAAGACGTGGTC-CCGTCTTcgtaaatgtaacaccatgtacaatgaaatc
blockSeqs : . . . . . . GA A . A . . C . . C . AAG . . G C . T A . TCT . . A TAAT . . . . . . A T A GGTCTGA A T . . . ATA GT CT T . A A GATTTGAT . T . . . . . A A TGCTACGCTC AC GG A . G TC
blockSeqs : . . . . T A . . . . . . . G . . . . . . . . . A CGTCTCA A . . . . . AG TT G . A A GATTGAT . T . . . . . . . GTACGCTC . . . . . T
blockSeqs : A T A . . . . . CT CT T . A A GATT . T . . . . . . . CGCTA . . . . . T
blockSeqs : . . . . . . GT CT T . A . TT . T . . . . . . . CGCTC . . . . . T
blockSeqs : . . . . . AA . T . . . G . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons : ** *** CT*** GATTGT******* ** ***** CGCTC******************* ** T***
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTAAAC-AACAAGACGTGGTC-CCGTCTTCATACTATGATTCTGAGATAAATAAGAAAAACGGAATAAGAATTCTCCTTTCAAAGAACTATGACACGTAAATTGTAAAGNATATGTACGGACTTCGTAACCCGGGGGTGCAGAAAAAAGACCCGCTAAGTTCTTGCC---ACATT-ATNATANAGACTTT-GAGTAGGAATGTCCATCAATT-GG-TGGCT--TTGACA-CCTC-TCCATC-ACGGTCCCCTAGTAANGCAAAATTAA-CCAATTTCCTTTACGTC-CCGCGT-AATCTG----ACTACCT--TGACGA-TC-CAATTTTGAATGTACGCGTGTTCGATTTGCACAATAGGTCT-AAATCAAAA-CTGTCAACTTAGACATGACAC--TATT-GTGAC-GCATTAA---TGGGGANTGGG--CT-ATTTTG-AAATATT-GA-TT---T---TGGTTGGGT--TCTGTTCTAAGTCAGTAA-GA-TCATAT-----GAAG-AGAAA-TCTTCGT-CACAAAGAATGGGCTT-CGCTT-----CGCTC--------------CGCTC--CGCCCATTCTTTGT--GACG-AAG-ATTTCTCTTCAT-A--T-GATCTTACTATTA
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTAAAC-AACAAGACGTGGTC-CCGTCTTCATACTATGATTCTGAGATAAATAAGAAAAACGGAATAAGAATTCTCCTTTCAAAGAACTATGACACGTAAATTGTAAAGNATATGTACGGACTTCGTAACCCGGGGGTGCAGAAAAAAGACCCGCTAAGTTCTTGCC---ACATT-ATNATANAGACTTT-GAGTAGGAATGTCCATCAATT-GG-TGGCT--TTGACA-CCTC-TCCATC-ACGGTCCCCTAGTAANGCAAAATTAA-CCAATTTCCTTTACGTC-CCGCGT-AATCTG----ACTACCT--TGACGA-TC-CAATTTTGAATGTACGCGTGTTCGATTTGCACAATAGGTCT-AAATCAAAA-CTGTCAACTTAGACATGACAC--TATT-GTGAC-GCATTAA---TGGGGANTGGGCT---ATTTTG-AAATATTGATTGT-------TGGTTGGGT--TCTGTTCTAAGTCAGTAA-GA-TCATAT-----GAAG-AGAAA-TCTTCGT-CACAAAGAATGGGCTT-CGCTTCGCTC-------------------CGCTC--CGCCCATTCTTTGT--GACG-AAG-ATTTCTCTTCAT-AT---GATCTTACTATTA
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): ACATAACCCACTTTTTCAACAAATCAAATACCCCAACATCTCACAAAGAATGGATTCTTCATAGTGAAGATGCATTCTATTTTTCAGGTACTGAATACTGTTTGATTGGTTCATTTTGCAAGGAACTAAAAAATGGGCGTTTCTCAATGC
Unaligned ( gi|8 ): GAACATAACCCACTTTTTCAACCAATCAAATACCCCGAAATTTCACATAGTATATGGATTCTTCATAGTGAAGAATCGTTCTTTTTTTCCAAGTACAGAATAGTGTTCGATTGGTTCATTTTGCAAGGGGGCGTTTCTCAATTGA
Unaligned ( gi|9 ): GAACATAACCCACTTTTTCAACCAATCAATCACCCTAAAAAGAATGAATTCTTCATAATGAAGAGTCGTTCTATTTTTCGGGTACTGAATAGCGTTTGATTGGTTCATTTTGCTAGGAACCGAAAAATGGGCGTTTCTTAA
Unaligned ( gi|12 ): AACATAATCCATTTTTTTCAGCCAATCAAATACCCCCGAAATTTTGCAAGGAATGGAATGTTCATGGTGAAGAATTATTCT
Unaligned ( gi|14 ): TACCCCAAAATCTCACAAAGAATGGATTCTTCATAGTGAAGATTCATTCTATTTTTCAGG
Unaligned ( gi|15 ): TTTAACTGCGGTATGGTGTTCTTTGCTTTGTAGTGATATTTATTTTGCACTGGTGT
Unaligned ( gi|16 ): ATGTATTCATGCAATAACAGCATTTAGTTGGTTTTTGTTAGTGTG
Unaligned ( gi|17 ): TAGAACATAACCCACTTTTTCAACCAATCAGA
Alignments
lowQualScore : 1 1 1 11 1 1 11 1 2222 1 11 1 1 1 1 222 222 1 1 1 1 11 333 1 1 22222 1 1 2222 11 1 1 3333333 111 11111 333333333 22222 555555555555555555555555 11 1111
lowQualScore : 3 3 5 88 5 5 88 5 3333 5 88 5 1 5 5 2 5 111 333 3 1 1 3 3 3 88 777 3 3 0 1 22222 0 3 0 3 8888 88 3 3 7 7 0 0 3 1111111 1 6 77 5 0 0 5 555 55 88888 777 3 6 444444444 99 3 6 6 00000 8 6 6 6 666666666666666666666666 99 88 6 8 8 3333
lowQualScore : . . . .. . . .. . .... . .. . . . . . . ... ... . . . . . . .. ... . . . . ..... . . . . .... .. . . . . . . . ....... . . .. . . . . ... .. ..... ... . . ......... .. . . . ..... . . . . ........................ .. .. . . . ....
lowQualScore : 3 3 0 00 5 5 00 5 0000 5 00 5 0 5 0 5 0 000 333 3 0 0 3 3 3 33 000 3 3 7 0 33333 7 3 7 3 3333 33 3 3 3 3 7 8 2 0000000 0 7 99 7 1 3 7 777 11 00000 777 2 7 000000000 22 2 7 7 00000 0 7 7 7 777777777777777777777777 22 33 7 0 0 0000
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTAAAC-AACAAGACGTGGTC-CCGTCTTCATACTATGATTCTGAGATAAATAAGAAAAACGGAATAAGAATTCTCCTTTCAAAGAACTATGACACGTAAATTGTAAAGNATATGTACGGACTTCGTAACCCGGGGGTGCAGAAAAAAGACCCGCTAAGTTCTTGCC---ACATT-ATNATANAGACTTT-GAGTAGGAATGTCCATCAATT-GG-TGGCT--TTGACA-CCTC-TCCATC-ACGGTCCCCTAGTAANGCAAAATTAA-CCAATTTCCTTTACGTC-CCGCGT-AATCTG----ACTACCT--TGACGA-TC-CAATTTTGAATGTACGCGTGTTCGATTTGCACAATAGGTCT-AAATCAAAA-CTGTCAACTTAGACATGACAC--TATT-GTGAC-GCATTAA---TGGGGANTGGG--CT-ATTTTG-AAATATT-GA-TT--G--TTGGTTGGGT--TCTGTTCTAAGTCAGTAA-GA-TCATAT-----GAAG-AGAAA-TCTTCGT-CACAAAGAATGGGCTT-CGCTT-----CGCTC--------------CGCTC--CGCCCATTCTTTGT--GACG-AAG-ATTTCTCTTCAT-A--T-GATCTTACTATTA
Reference ( family-6772 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTAAAC-AACAAGACGTGGTC-CCGTCTTCATACTATGATTCTGAGATAAATAAGAAAAACGGAATAAGAATTCTCCTTTCAAAGAACTATGACACGTAAATTGTAAAGNATATGTACGGACTTCGTAACCCGGGGGTGCAGAAAAAAGACCCGCTAAGTTCTTGCC---ACATT-ATNATANAGACTTT-GAGTAGGAATGTCCATCAATT-GG-TGGCT--TTGACA-CCTC-TCCATC-ACGGTCCCCTAGTAANGCAAAATTAA-CCAATTTCCTTTACGTC-CCGCGT-AATCTG----ACTACCT--TGACGA-TC-CAATTTTGAATGTACGCGTGTTCGATTTGCACAATAGGTCT-AAATCAAAA-CTGTCAACTTAGACATGACAC--TATT-GTGAC-GCATTAA---TGGGGANTGGG--CT-ATTTTG-AAATATT-GA-TT--G--TTGGTTGGGT--TCTGTTCTAAGTCAGTAA-GA-TCATAT-----GAAG-AGAAA-TCTTCGT-CACAAAGAATGGGCTT-CGCTT-----CGCTC--------------CGCTC--CGCCCATTCTTTGT--GACG-AAG-ATTTCTCTTCAT-A--T-GATCTTACTATTA
gi|1 : TCGTAAACCAACAAGACGTGGTAGCCGTCTTCATACTATGATTCTGAGATAAATAAGAAAAACG--ATA-GAATTCTCCTTTCAA-GAACTATGACACGTAAATTGTAAAGAATATGTACGGACTTCGTAACCAGGGGGTGCAGAAAAAAGACCCGCT---TTCTTGCCCGGACATTTATCGTATAGACTTTTGAGTGGATATGTCTATCAATT-GG-TGGCTATTTGACAACCTCATCCAACGATGCTCCACTAGTAACGCAAAATTAAACCAATTTGCTTTACATCTCCACCTTAATCTGGTCAACTACCTCTTGACGAATCTCAATTTTGAATGTATGCGGCGTCGATTTGCACA-TAGG-----ATTCGAA---TAACAA---AAACATGACACACTATTTGCGATTGCATTAAA--TGGAGAGTGGGGTCTCATTTTGGAAACATTTGAGTT--GAGTTGGTTGGGTGGTC-GTTCTAAGTCAGTAACGACTCATATAGGGTGAAGTCGAAAGTCTTCGT-C-CAAAGAATGGGCTT-CGCTTTT---CGCTCGGCTCTACGCCTCGCGCTC--CGCCCATCTTTTGTACGACG-AAGTATTTCTCTTCAT-ACTC-GATCTT
gi|10 : agaacataacccactatttttctaaaccgattcaatatactccataagtttctcacaattatggtttctaccatagttgaagaatgcgaggtttatttttctggtagcaacaatcagtgtttttgatatgtgggatgatcatgttgctaagggggcgtgtctctattatgtatctccgcaagttaatatcgcagataggattgtgttttgtggtgtgttagatgcttgcatgagtatttcatgcaaagggttacaataattacaccattcgattggcggtttgcgtgctttcaatgaaaattaacttctatatttcgatattctA-TCTTCGTACA-AAAGAATGGGCTTACGTTCGTA--CGCTC--------------CGCTCACCGCCCATTCTTTGTGGGACGAAAG-ATTTCTCTTCATGA--TCGATCTTACt
gi|11 : atggcTCC-AAATTAAAATCAATCAACTTAGGCATGATA---TACT-A-------ATTAAATATGGG---CGGG-----ATTT-----AT-TT-GA-TT--G-----GTTGGAC--TCTGTTCTAAGTCCGTAA-GA-
gi|13 : TCAAAA-CTGTCAACTTAGACATGACAC--TCTT-GTGGC-GCATTAA---TGGGGGTTGGG--CT-ATTTTG-AAAa
gi|2 : TTGTAAAC-AACAAGACGTGGTC-CCGTCTT-ATA--ATGAT-CTGAGATAAA-AAGAAAAACGGAATAAGAATT----TTTCAAAGAA--ATGACACGTAA-TTGTAAAACATA-GTACGGACTT-GTAACTCAGGGGTGCAGAAAAAAGACC-GCTAAGTACTTGCC---ACACT-ATGATACAGACTTT-GAGTAGGAATGTCCATCAATTTGG-TGGCT--TTGACA---TC-TCCATC-ACAGTCTCCTAGTAAAGCAAAATTAA-TCAATTTCCTTTATATC-CCACGT-AATCTG----ACTACCT--TGACGA-TT-CAATTT-GAATGTATGCGTGCTCGATTTGTACAATAGGTCTGAAATCAAAA-CTGTCAACTCAAATATGACAC--TATT-GTGAT-GCATTTA---TGGGGAGTGGG--TT-ATTTGG-AAACATT-G----------------GGT--TCTGTTTTAAGTCAGTAA-GA-TCATAT-----GAAG-AGGAA-TCTTTGT-CACAAAGAATGGGCTT-CGCTT-----CGCTA--------------CGCTC--CGCCCATTCTTTGT--GACG-AAG-ATTTCTTTTCAT-A--T-GATCTTACTATTA
gi|3 : attccaataacagcatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTGTTCAATTTGTACAATACGTCTCAAATCAAAA-TTGTCAACTTAGACATGGCAC--TATT-ATGAC-GCATTAA---TGGGGCTTGGG--CT-ATTTTG-AAATATT-GA-TT--GA-TTGGTTGGGT--TCTGTTCTAAGTCAGTAA-GA-TCATAT-----GAAG-AGAAA-TCTTCGT-CACAAAAAATGGGCTT-CGCTTTGCTACGCTC--------------CGCTC--CGCCCATTCTTTGT--GACG-AAG-ATTTTTCTTCAT-A--T-GATCTTACTATTA
gi|4 : catcatgggttactgatattacgagTGTCAACTTAGACATGACAC--TATT-GTGAC-GCATTAA---TGGGGGTTGGG--CT-ATTTTG-AAATATT-GA-TTTGA--TTGGTTGGGT--TCTGTTCTAAGTCAGTGA-GA-TCATAG-----GAAG-AGAAA-TCTTTGT-CACAAAGAATGGGCTT-CGCTT------------------------CGCTC--CGCCCATTCTTTGT--GACG-AAaattatcgtgcaagacgacgattgtgtgttttagtgtaaaaagctcatcgtccaaaaaggtgatgataatttttagtttaaatgtgaaatacaaataaaatacagcaactgacattaactgtggtatcgtgttctttgctttgcaatgatatttgttttgtacgggtgtc
gi|5 : tTCTTTCT---ACATT-ATTATAAAAACTTT-GAGTAGGAATATCCATCAGTT-GGATGGCT--TTAACATCTTC-TCCATC-CCAGTCCCCCAATAAGGCAAAAT-----CACTTTCATTTACGTC-AAGCGT-AATCTG----ACTTGCT--TGAAGA-TC-C-ATTTTGAATGTACGCGTGTTCGATTTACACAATA--T-----------A-CCGTTATCTCAGGCTTGACAC--TTTT-GTTTC-GCATATA---TGGGGAATGGG------------------T-GA-T------TTGATTG-----------CTAAGTCAGCAA-GA-TTATAT-----GAAG-AGAAA-TCTTCGT-CACGAAGAATGGGATT-CGCTC-----CGCTC--------------CGCTC--CGCCCATTCTTTAT--GACG-AAG-ATTTCTCTTCAT-A--T-GATCTTACTATTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatgtgaaatacaaataaaatacagcaactttaactgtggtatcgtgttcttcgctttgtaatgatatttgtgtacgggtgt
gi|7 : TCGTAAAC-AACAAGACGTGGTC-CCGTCTTcgtaaatgtaacaccatgtacaatgaaatc
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): ACATAACCCACTTTTTCAACAAATCAAATACCCCAACATCTCACAAAGAATGGATTCTTCATAGTGAAGATGCATTCTATTTTTCAGGTACTGAATACTGTTTGATTGGTTCATTTTGCAAGGAACTAAAAAATGGGCGTTTCTCAATGC
Unaligned ( gi|8 ): GAACATAACCCACTTTTTCAACCAATCAAATACCCCGAAATTTCACATAGTATATGGATTCTTCATAGTGAAGAATCGTTCTTTTTTTCCAAGTACAGAATAGTGTTCGATTGGTTCATTTTGCAAGGGGGCGTTTCTCAATTGA
Unaligned ( gi|9 ): GAACATAACCCACTTTTTCAACCAATCAATCACCCTAAAAAGAATGAATTCTTCATAATGAAGAGTCGTTCTATTTTTCGGGTACTGAATAGCGTTTGATTGGTTCATTTTGCTAGGAACCGAAAAATGGGCGTTTCTTAA
Unaligned ( gi|12 ): AACATAATCCATTTTTTTCAGCCAATCAAATACCCCCGAAATTTTGCAAGGAATGGAATGTTCATGGTGAAGAATTATTCT
Unaligned ( gi|14 ): TACCCCAAAATCTCACAAAGAATGGATTCTTCATAGTGAAGATTCATTCTATTTTTCAGG
Unaligned ( gi|15 ): TTTAACTGCGGTATGGTGTTCTTTGCTTTGTAGTGATATTTATTTTGCACTGGTGT
Unaligned ( gi|16 ): ATGTATTCATGCAATAACAGCATTTAGTTGGTTTTTGTTAGTGTG
Unaligned ( gi|17 ): TAGAACATAACCCACTTTTTCAACCAATCAGA