lowQualScore : 1 22 1 1111 111111 222222 1 444444444444444 333333 11111 111 111111 1111111 333333333333 6666666 2 44444444 33333 2222 11 222222222 3333333 2222 3333 111 111 222222222222222 222222 1 22222222 22 1111 11111 444444444444 11 11111 1 22 22 22222222222222 2 444 111 11111111111111 11 444444444 11 11 22 1111 333 1 1 1 33333333333 11111111 111 11 88888888888888888888888888888888 111 1111111111 2 11 111111 3333333333333333 11 1 3333333333333333333333333333333333 11111111 11111 1 11 22 4444444444444444444 11 2 1
lowQualScore : 6 6 3 6 22 2 77 5 2222 5 5 5 1 5 444444 8 222222 5 888888888888888 0 77 5 000000 44444 5 5 222 4 999999 5 5 4444444 111111111111 5555555 4 5 5 5 22222222 33333 5 0000 5 00 5 9999 77 66 66 5 555555555 8 5 5 4444444 2222 888 66 5 5555 66 777 000 777777777777777 77 777 5 555555 6666 1 5 00000000 5 00 888 0000 22222 555555555555 11 5 5 22222 5 2 777 8 888 8 44 22 11111111111111 0 6 111 777 5 77777777777777 55 4 6 66 9999 4 333333333 11 5 5 66 5 5 5 99 77 5 5555 333 66 3 0 3 0 00000000000 99 4 33333333 666 4 44 0 33 777 8 44 33333333333333333333333333333333 1 444 2222222222 3 7 8 1 3 3 3 99 3 55 999999 7777777777777777 55 55 3 3 3 3 55 3 9 7 6666666666666666666666666666666666 1 3 33333333 3 77777 3 7777 3 3 88888 8 3 44 77 3 77 44 555 3 33 6666666666666666666 4 33 7 7 66 5
lowQualScore : . . . . .. . .. . .... . . . . . ...... . ...... . ............... . .. . ...... ..... . . ... . ...... . . ....... ............ ....... . . . . ........ ..... . .... . .. . .... .. .. .. . ......... . . . ....... .... ... .. . .... .. ... ... ............... .. ... . ...... .... . . ........ . .. ... .... ..... ............ .. . . ..... . . ... . ... . .. .. .............. . . ... ... . .............. .. . . .. .... . ......... .. . . .. . . . .. .. . .... ... .. . . . . ........... .. . ........ ... . .. . .. ... . .. ................................ . ... .......... . . . . . . . .. . .. ...... ................ .. .. . . . . .. . . . .................................. . . ........ . ..... . .... . . ..... . . .. .. . .. .. ... . .. ................... . .. . . .. .
lowQualScore : 7 7 3 7 55 2 99 7 1111 0 7 7 4 7 777777 7 111111 6 333333333333333 6 99 7 333333 33333 7 7 444 3 333333 7 7 4444444 000000000000 0000000 4 7 7 7 77777777 00000 7 6666 0 66 0 0000 22 99 99 0 555555555 5 0 0 2222222 4444 888 99 0 0000 99 111 000 666666666666666 99 000 7 777777 1111 4 7 77777777 7 66 888 5555 55555 555555555555 99 0 0 55555 0 6 000 3 888 8 99 66 44444444444444 0 5 999 111 0 11111111111111 00 5 7 11 4444 4 222222222 99 0 0 99 0 0 0 11 88 0 6666 999 66 9 1 5 0 44444444444 55 0 77777777 555 0 88 8 77 888 9 66 22222222222222222222222222222222 1 333 6666666666 6 3 9 3 6 6 6 99 6 00 111111 9999999999999999 00 00 6 6 6 6 00 6 7 3 4444444444444444444444444444444444 2 6 99999999 6 99999 3 1111 3 3 33333 0 3 66 55 3 99 66 888 6 22 9999999999999999999 0 55 5 4 99 0
consensus : TGCA-AG-TA-CTAGTT-ATT-GAAGTAAG--T-TACAC----AATA-A-CAGA-AA-----GAAAGATGTCCA------AGTNGAT----AC---TAA---TTAAA--TA-T--AT-TTTTGT-----CAT-A-TTGT-TTAANTTT--C---AT-AT-TT-C---GGTA-NGA-------TATTTTTTTT-A---AAGTC-TGG-CCT-A-TG-C-A--AGGTTAT--GA-CGA-AAAATAGAG-CCC-TTAT-T--A-TGAG-CATATGA--TACATG--A-AGTCC----ACA--ATATNT-TG-TA---GG--GTCT--G-CA---CATT--T-CTAN---GACCC--CCCC--TCC---CC---G---T-------G--TGANTG-AC-GAT--ACT-GT-CC-TA-TA--------TCCATA-TT-TCT---ATTTT--TTAACA-----TAAT-----A-G--CAG--TTGTCAT-CAAATTCC-AGGAATCCT-----TTA-TAAGTACTT--AAAAAGC---TTTTCAATCCGGTACCG----TA----C---ATCAGATCCGCA--TTCTCTCGTAA-TGGTGGTG-GTG----GGGGNTGGG-GGTACCCTTTATCCTTCACACC--CGTCCTTA----AAATA-GG-AACTTAATGCTT--CTATC-ATT-T--T-CA-C-TCACCAGAATCTCTTGCA-AA----TGTAAATTT-ATAATTAACNAAACACATTT-ATCCCGT-G--AAA-TGAA--AAAA-GG------C-GT---AA-ATT-AGCGTTTTGATN-CTG---A-T-GTTTA--CATTAGTA---CCTGC-NTGGTTT---CC-CCCGTTTTTTT--CGC----C---T-AC-T-CAG-GAGTAGA-T-G-GCGACC-AG-GACA--TC------TTAAAT--GTT--C-------ACCG--TAAA--CCAAG-ATGAT-GA-C-A--CA-C-AA-ACACGAAAAAA-----TA-GTTA-TG-------------------ATTGTT-TC-------TTTTAATCC-AAAT---AAGTGAT-T----T-CA-T-----AGTCTTACTA-C--TATGGCT-GA--G--AAAGGC---GTCC-TT-GTCTCCA-G--AGT-CATTCCA---ACCGGAAGT-GA--GGTCGCG-CGAGAAC--TGTGT-AGCCCTA
Reference ( gi|6 ) : TGCA-AG-TA-CTAGTT-AT--GAAGTTAG--T-TACAC----AATA-A-CAGA-AA-----GAAAGATGTTCA------AGTTGAT----AC---T-----TTAAA--TA-T--AT-TTTTAT-----CAT-A-TTGT-TTAAATTT--C---AT-AT-TT-C---GGTA-TGA-------TATTTTTT-------AAGTCCTGG-CCT-A-T--C-A--TGGTTAT--G--CGA-AAAATGGAG-CCC-TTAT-T--A-TGAA-CATATGA--TACATG--A-AGTCC----A-A--ATATGT-TG-TA---GA--GTCTT-G-CA---CATT--T-CTAA--AGACCC--CCCC--TCC---CC---G---T-------G--TGAATG-AC-GAT--ACT-GT-CC-TA-TA--------TCCATA-TT--CT---ATTTT--TTAACA-----TA-T-----G-G--CAG--TTGTCAT-CAAATTCC-AGAAATCCT-----TTA-TAAATACTT--AAGAAGC---TTGTCAATCCGGTACCG----TA----C---ATCA-ATCTGCAATCTCTCTCGTAA-TGGTGGTG-GTG----GGGGTTGGGTGGTGCCCTTTATCCTTCACACC--CGTCCTTA----AAATA-GGAAACTTAACGCTT--CTATC-ATT-T--T-CA-C-TCACCAGAATCTCTTGCA-AA----TGTAAATTTAATAATTAACGAAACACAATT-ATCCCGT-C--AA--TGAA--AAAA-GG------C-GT---AA-ATT-AGCGTTTTGATG-CTG---A-T-GTTTAAGCATTAGTAAAGCCT-C-TTGGTTT---CC-CCCGTTTTTTT--CGC----C---T-AC-T-CAGTGAGTAGA-T-G-GCGACCCAG-GACA--TC------TTAAATTTGTT--A-------ACCG--TAAA--CCAAG-ATGAT-GA-C-A--CA-CTAA-ACACGAAAAAA-----T--GTTA-TG-------------------ATTGTT-TC-------TTTTAATCC-AAAT---ACGTGAT-T----T-CA-T-----AGTCTTACTG-C--TATGGCT-AA--G--AAAGGC---GTCC-TTGGTCTCCA-G--AGT-TATTCCA---ACCGGAAGT-GA--GGTCGCGCCGAGAAC--TGTGT-AGCCCTA
gi|7 : TGCA-AG-TA-CTAGTT-AT--GAAGTTAG--T-TACAC----AATA-A-CAGA-AA-----GAAAGATGTTCA------AGTTGAT----AC---T-----TTAAA--TA-T--AT-TTTTAT-----CAT-A-TTGT-TTAAATTT--C---AT-AT-TT-C---GGTA-TGA-------TATTTTTT-------AAGTCCTGG-CCT-A-T--C-A--TGGTTAT--G--CGA-AAAATGGAG-CCC-TTAT-T--A-TGAA-CATATGA--TACATG--A-AGTCC----A-A--ATATGT-TG-TA---GA--GTCTT-G-CA---CATT--T-CTAA--AGACCC--CCCC--TCC---CC---G---T-------G--TGAATG-AC-GAT--ACT-GT-CC-TA-TA--------TCCATA-TT--CT---ATTTT--TTAACA-----TA-T-----G-G--CAG--TTGTCAT-CAAATTCC-AGAAATCCT-----TTA-TAAATACTT--AAGAAGC---TTGTCAATCCGGTACCG----TA----C---ATCA-ATCTGCAATCTCTCTCGTAA-TGGTGGTG-GTG----GGGGTTGGGTGGTGCCCTTTATCCTTCACACC--CGTCCTTA----AAATA-GGAAACTTAACGCTT--CTATC-ATT-T--T-CA-C-TCACCAGAATCTCTTGCA-AA----TGTAAATTTAATAATTAACGAAACACAATT-ATCCCGT-C--AA--TGAA--AAAA-GG------C-GT---AA-ATT-AGCGTTTTGATG-CTG---A-T-GTTTAAGCATTAGTAAAGCCT-C-TTGGTTT---CC-CCCGTTTTTTT--CGC----C---T-AC-T-CAGTGAGTAGA-T-G-GCGACCCAG-GACA--TC------TTAAATTTGTT--A-------ACCG--TAAA--CCAAG-ATGAT-GA-C-A--CA-CTAA-ACACGAAAAAA-----T--GTTA-TG-------------------ATTGTT-TC-------TTTTAATCC-AAAT---ACGTGAT-T----T-CA-T-----AGTCTTACTG-C--TATGGCT-AA--G--AAAGGC---GTCC-TTGGTCTCCA-G--AGT-TATTCCA---ACCGGAAGT-GA--GGTCGCGCCGAGAAC--TGTGT-AGCCCTA
gi|5 : TGCA-AGGTA-CTAGTT-ATTTGAAGCTAAGCT-TACAC----AATA-A-CAGATAA-----AGAAGA-GTCCA------A-TTGAT----AC---TAAAA-TTAAA--TA-T-------TTAT-----CAT-A-TTGT-T-AATTTT--C---AT-AT-T--C---AGTA-AGA-------TTTTTTTTTA-----AAGTC-TGG-CCT-AGC--C-A--AGGTTAT--GA-CGA-AAA-TA-AG-CCC-TTAT-C--A-TGAG-CATACGA--TACAGG--A-AGTCC----A-C--A-ATAT-CG-TA---CGCCGTCT--G-CA---CATT--T-CTAT---GACCC--CCCC--CCCTTTCC---A---G-------GGTTGATTC-AC-------------CC-TAATA--------TACATT-TC--CT---ATTTT--A-AACA-----CA-TAATAAG-C--CAT--TCGTCATTCAGATTC--AGAAATCAT-----TTA-GAAGTACTG--AA-AAGCCCTTTTTCA-TCC--TACCGATACTA----C---ATCAGATCCGCA--TTCTCTCGTGG-TGGTGGTG--TG----GTGGGCGGGAGGTACCTTATATCCTTCACACC--GGCCTTAA----AAATA-GG-TACT--ATGCTTTCTTATC-ATTGT--T-CACC-TCACCAAGATCTC-TACA-AAATGCTATAAATT---TAATTAAT--AACACATTTCATCACGC-TGAAA--TGAA--GAAA-GG------C-GTA--AA-ATT-AGCG-TTTGATT-CTG---ATT-GCTTA--CATTAGTA---CCTGC-AT-GTTT---AC-CTCGTTTTTTT--CGC----C---CAAC-T-CA--GAG-AGA-T-GTGCGA-CCAG-GACA--TCT-----TTAAA--TGTT--C-------ACCG--TAAA--CCAA--ATGAT-GACC-A--TA-C-AA-ACACGAAAAAA-----TTAGTTAGTG-------------------TTTGCT-TC---------TGAATCC-AAAT---AAGTGAT-T----T-CA-T-----AGTC-TACTA-C--TATGCCT-GA--G--AAAGG----GTCCATTG--CTCCAGG--AG-----TCCAATCACCGCAA-T-GAGGGGTCGCG-CGCAAAC--TGTGTCAGCCC
gi|3 : tgttttattggatcatcttagaatacatgtatgatgttgctgatgtctgaatgaagtataattcatcaacttaacttcatggaaaggtatagttaaaacaaacttattagtgaattgaatgtagccatgataaagctgctcatatagaaaatctggccctcaattcttaaatgactgaaacccccaacttgggcgaattgacaccactcagtcagaacattttcataattgtctacgctatgactaatttacgctcatgctttgcattccgacatggaaaaaaTGCA-AG-TA-CTAGTT-AT--TGAGTAAG--TGTACAC----A-TACA-C-----------GAAAGATGTCCA------AGTGGAT---------------TCAAA--AA-TTAATATTTTGT-----CAT-A-TTGT-T-AATTTT--C---AT-AT-TCAT---GGCA-AGA--------ATTTTTTTTAA---AAGTC-TGG-CCT-A-TGCC-A---GGTCATTGA--CGA-AAA-T--AG-CC----ATAT--A-TGAG-C-TATGA--TACATG--A-AGTCC----A-ACAATATTC-TG-TA---G---GTCTG-A-------ATT--T-CTAT---GACCC--CCCC---CC---CA---G---T-------G--T---TGTGC-AAT--TCA-AT-CTATA-TA--------TCCATA-TTTTCT---ATTTT--T-AACA-----TAAT-----A-G--CAG--T-GTCAT-CAAATTCC-AGA--TCCA-----TT--TAACTATTT--AAAAAGC---TTTTCA-TCCG-TACCG----TA----CTACATCA-GCC-GCA----TTCTTGTA--TGGTGGTG-GTG----TGGGGGGGGGGGT---CTTTATCCA-CACACC--CGTTCCTT----AAATA-GGTTACT-ATTGCTTT-CTATCCATT-T--T-CA-CCTCACCA-AGTCGCT-GCATGG----TAGAAATT--ATATTTAATAAACCACATTT-ATCC-GT-G--AAA-TGAAG-AAAA-AG------C-GT---AA-ATT-AG-GTTTTGATC-CTG---A-T-GTT---ACATTAG----ACCTGC-ATTGTTTGA-CA-CTCGTGTTTG---CGC----T---A-AC-T-CAG-GAGTAGA-TTG-GCGAC--AGAGACA--TC------TTAAAT--GTT--C-------CCTG--TAA----CAAG-AT-AT-G--C-A--CA-CAGACACACGAAAAAA-----TTAGTTA-TG-------------------AT-GTT-TC-------TTTTAATCA-CAAT---AAGTCTT-A----T-CA-T-----AGTC-TACTACC--TATG--T-GAC-G--AAAGGC---GTCC-TT-GTCTCCA-G---GTGCAT--CA-----CGGAAGT-GA--GGTCGCGC--GGGAC--TGTGT-AGCCTTA
gi|2 : attgaagatatccctgtattccttcaatttaataaattcaacatattttttttatcaacaaatgtcttcagagtagatcttgaatttgatcaatttgaagtttgatggaatcaagaaccgtttaaattaaagacatcattcaaatctggagaaaaaaggagtttgtcacaggatcatagctatttgatatcgtttattgattatctaaataccatgtatgtgtgatgtctaatagactatataagtctcatcaaatctactcatgataaggtatagttaaaaaaatactagtattgtgaattaatgagcctaataatctgtcactatagaaacttgccctaattctaatgacagaaccccattgcggcagtgacacccactagtcaaagattatttattgcatttggtaactagatcatttaggtcatgcgaatttgcattctgacatggaaaaTGCA-AG-TAACTAGTTTAT--GAAGTAAG--T-TA-AC----AATA-A-CAGA-AA-----AAA---TGTCCA------AGT-GAT----ATAAATAA---TTAAA--TA-T------TTTGT-----CATTG-CTATGTTAATTTT--CT--AT-AT-TT-C---AGCA-AGA--------ATTTTTTTTAAA--AAGTC-TGG-CTTCG-TG-C-AAGTGGCTCA--GAACGA-AAGA--GTG-CCA-TGAT-TCAA-TGAG-CATATGA--TACATGTTATAGTCT----A-C--AC-TAT-CG-TA---G---GTC-----CA---CATG--T-CTAG--TGACCC--CTCC--CCC---CC---A---T-------G--TTGATG-AC-ATC--ACT-GC-CTATA-TA--------TCCATAATT--CT---ATTTT--T-AACA-----TAAT-----AAG--CAGA-TTGCAAT-CAAATTCC-AGGAATCCT-----TTACTAAGTACT----AAAACC---TTTTCA-TCCG-TACCG----TAGCTAC---ATCA-ATCCGCA--TTCTCTGGTAAGTGGTGGTGTGTT----GGGG--GGG-GGTACC-TTTATCTACCAC-----CGTCCTTA----AA-TA-GGTA---TA-----T--CTCTC-ATT-C--T-CA-C-TCACCA-AGTCTC--GCA-AAA---TGTAAATT--ATACTTAAC-AAACA-ATTT-ATCCCGT-G--AAA-TGAAGAAAAA-GG--------GT---AA-AT--AGCGTTTTGATT-CTG---A-T-ATTTA--CATTA-TA---CCTGCATTGAGTT---AC-CTCGTTGT-----CGCG---C---T-ACGC-CAG--AGTAGAAT-G-CTGACC-AG-GACA--TC------TTAAAT--GTT--C-------ACTG--TAAA--CCA-G-AT-AT--A-C-A--CA-C-AA-ACACGAAAAAA-----TA-GTTA--G-------------------ATT--T-TC-------TTT-AATCT-AAAT---AAGTGCT-T----T-CA-T-----AGTC-TA-TA-C--TAT--CTGAA--A--AAAGGC----TCC-CTTGTCTCCA-G--A------TCCATC-ACACGAA-T-GAT-CGTCGCG-CGAG-ACTTTGTGT-AGt
gi|1 : atatcattgcattatagtagaataacccatgaataatttgtataaatattatatatcaatataagaataaataccccctgtattccttcaattttaaaaattcaaaaacatattttcttatatcaacaatagtctagagtaagactcctgaattatgattcaagttcgaatgttgatgatcagcgaacctttaaatgaaagacatcacttcaaaatctggaaaaaaggatttgttagcatgggatttagcattggataatctttttgattgataaatatatagatgttattaatgatgaagattctaagtataaatctcaaaaatatgaagggtatagtaaaaaaatactattatgtaatataatgtatgcgaaattaatatgtcgttatattagataatcttgcctacattcttaaaatggacataaacccctggcattgacaccactcagtcaaaatagattattgtatcatcatattgcatacataagactcgatgtatggctcctgcttatctctagatgcattgctgacatgaaaaTGCACAG-TA-CTAGTT-ATT-GAAGTAAG--T-TACAC----AATA-A---GA-AG-----TGAAGATGT-CA------AGT-GATCTAAAA---T-----TAAAA--GA-C--AT-TTTAGT-----CAT-A-TTGT-ATAAGTTT--CTTCAT-ATCTT-C-----TA--GA-------AATTTTTTTTTTTAAAAGTC-TGGTCCT-A-T--------AGTTAT--GA-CAAGAAAATAGAG-CCCATTGT-T--AGTGAG-CATATGAATTACATG--A-AGTCC----ACA--ATATATCTG-TG---G----TCT--G-CA---CATT--TTCTCATTGGAACC--CCTC---CC---CC---GACTTACAAAGAG--TGATTG-ATTGGTC-ACT-ATACC-TA-TA--------TCCATA-TT--TTCTGATTTTATTTAACAATAGATA-T-----A-GAACAGCGTTGTCAT-CAGATTCCCAGGAATTCA-----TTG-TATCTACTTGTAAACAGC---TTTTCA-TCCG-TACCGGTACTA----C---ATGC-ATCCGCGATTCCTCTGGTA---GGTGGTG-GTGTTGGGGGGGGGGGGGGTAACCTTTATCCTCCACACCGCCGTCCTTA----AAATA-GGTA--TTA-TGCCT--CATTC-ATT-T--TTCA-C-TCACCCAAATCTC--GAA-GA----TGTAAATTT-AT-ATTAACTAAACACATTT-AT-CCGTGA--AA--TGAA--GAAATGG------CGGT---AA-TCT-AGCG-TTTGATT-CTG---ATT-GTTTA--CATTAGTA---CCA-C-T--ATTTTTACCACTCGTTTTTTG--CAG----CATAT-AC-TACAGAGAGCA-A-T-G-GCTA-CCAG-GACAATCC------TTAAA---GTC--T-------ACTGGCTAAATTCCAAGTATGA---G-C-A--TA-CCAACACACGAAAAAA-----TA-GTCC-TGGATAGACGGGCATACAGCAATTATTGTC-------TTTTAACCA-AAATA--ATGTGAT-T----TCCA-T-----AGTCCTACTA-CATCATGGCT-GACTG---AAGGC---GTCC-TT-GTCT
gi|10 : aaaattattgttgttgcaagaacataatcatagcattatgataaggtgcgaaactgccagcaaatctgttgatatggataataatctcccttaaattcactatcagatacatgtatattgaatgaggaagaaataatattcctgtatcctatattcaattaataatttcaactaacgaattttttttcacttcatcaacaaactgtcctagagtgagtatcctctgaatttctgacataatcaagagggctacttgatggatcaagatcacctatttaaactaaaaagaaactgagctcaataggatcacgcagaaaatctggacgagtagaaaagtgacgacttgtaccatgggaatacgttacctttcaaattctttgaatatctgtatttaaaagctggttgttttattgatttatatctaaatacatgtatggaattacgtgggagatgtactgagaagacgtactcaattcattccaacctaatgagttacatgaaaggtggtattaggttttgatgaataataataattatttgttgaattaattacagtaccatagagatcacactctgtctccacccctagtttggaatatgaactaagctcacctgactaccaatattctaaatgaagacgtggaaaaaaccataattggaatgcccccttgggcattgacctacacctgcagtcgaataaacgctgatatttattcataatagtcacatagactcattattaggttcatgctttggccattcttgacatggaaataaaTGCA-AG-TAACTGGTT-ATT-GAAGT-AG--T-TACAC----A-TA-A-CAGA-AA-----AAGAAGTGTCCAG-----AGTGGAC----AC---TAAAAATTAAA--TA-T------TTTAT-----CAT-A-TTGT-T-AGATTTTCC---CT-AT-TT-TCAGGGTAATGA-------TATTTTTA-------AAAGTATGG-CCT-A-TG-C-A--AGGTTAT--GA-CGA-AAAATAGAG-TC--TTAT-T--A-TGAG-CATATGA--T-CTTG--A-AGTCC----ACA--ATATTC-TG-TA----A--GGCTC-G-CA---CATT--T-CTAT--GAACCC--CCtgcaggagctcccatcaaacacgctgacatgatacgtgaggatggcgagaagcactgtttagcc
gi|4 : aaaagaatcatctcaaaatctggagagaaaaaaaggagttgttgtaacatgggacatctagctatttgatatagtgttttttgatatctaatacatgtatgatgtggattgaactacaaattccatcaaattaacttcatggaaatggtactagtaaataaatactattgatgtgaaattaattagcatgataaatctgtcatatagaaatcttgccctaattctaaaactgaaacccccattgggccaattgacaccaaccagctaaaaagattattttttccataattgtaactaacatgctcttgcacttctgacatggaaAG--T-TACACTCTCAATA-AACAGA-AAAAGAAGAAATATGTCCACTAAAAAGTAGAT----AC---T-----AAAAAATTAAT--AT-CTTTATAACAACAT-AATTGT-TTTTATTTT-C---ATCAT-TT-C---AGGAGCGAGATTAATTGTTTTTTTCTA---AAGCCTTGG-CCT-A-TG-CGA--AGGTCATTGG--CGA-AAA-TAGAGTCCC-TTAT-T----TGAGGCATATGA--TACATG--A-AGTTCTCCTACA--ATATTT-TGGTATTTGG--GTCTTTGTCAGTTTATTGTT-CTCA---GATCCGCCCCC--TCC---CCCCAG---T-------G--TGAGTG-AC-GATTCACTTGT-CC-TA-TACATGTATATCCATA-TTGTCT---ATTTT--TTAACA-----TAAT-----AAG--CAG--TTGTCAT-CAAATTCC-AGGAATCCTTTAAATTA-TAAATACTT--AA-AAGC---TTTTC-ATCC-GTACCG----TA----C---ATCAGATCCGCA--TTCTCTCGT-A-TGGTGGTG-GT--------GTTGG--GGTA-CCTTCATCCTTCACA-C--CGTCCTTA----AAATA-GG-AACT--ATGCTT--CTATC-ATT-T--T-CA-C-TCACCA-AATTTC-TAC--AA----TGGAAATT--AT-ATTAACTAAACAT--TT-ATCC--------G--TGAA--ATGG-AG------C-ATTGAAA-ATT-TGTATTTg
gi|15 : tatacgaagaataatctcctgtattccttcatcaaattcaaaatatttttttatatcaacaaatagtctagatcgagtagattctctgaatttctgatacaagtttgatggaatcaagaactttaaataaagacattcagttcaaaaaatctcggagtgatgtgaaagtttttaccaaaagggagttttgtacaattgggatctttagctagttaatgtgatatcctgttttgtactgattatctaacatacatgtatgatgtatgtctgtatgaatacttaaacctcctcatcaaatctaacttcataaatgggaaaatgggtataggctttaataacataactattaattgccgtgagcttaagttaatgtagccatgataattcgtcatatagaaaaatcttgccctaatttcttaaatgactgaaacccccattgggcgaatttaaatgagacccactcagttcaaaaagatatctgtttttcagtaattatgttaactaggaattcattctaggcttcatgcttgtgcgctatttctgtcaatgcgccaaaaatgcccatataggttctattacacttgaacgcctaG-CCC-TTAT-T--A-TGAA-CATATGA--TACATG--A-AGTCC----ACA--ATATTT-TG-TA---G---GTCT--G-CA---CATT--T-CTAC---GACCC--CCCCCCTCC---CC---G---T-------G--TTGATG-AC-GATTTACT-GT-CC-TA-TA--------TCCATA-TTTTCT---ATTTT--TTAACA-----TA-TA----G-G--CAG--TTGTCAT-CAAATTCC-AGAAATCCT-----TTA-TAAATACTT--AA-AAGC---TTGTC-ATCC-GTACCG----TA----C---ATCAGATCTGCA--TTCTCTCGT-A-TGGTGGTG-GTG----GGGGTTGGG-GGTG-CCTTTATCCTTCACA-C--CGTCCTTA----AAATA-Gaatttcattg
gi|21 : T--CT---ATTTT--TTAACA-----TAAT-----ATA--CAG--TTGTCAT-CAAATTCT-AGGAATCCT-----TTA-TAAGTACTT--AA
gi|11 : AGGC---TTTTCA-TCCGAT-CCG----TA----CTACATCAGATCCGCA--TTCTCTCG-GA-TG-TGGTT-GTG---------T---TGGTACC--TTATCCCT-ACAAC--CGTCCT-A----AAATG-T---ACT--ATGCTT--CTATC-ATT-T--T-CA-C-TCACCA-AGTCTCT-GCA-AA----TGCCAATT--ATA-TTAACTAAACACATTTTATCC-GT-G--AAATTGAA--GAAA-GG------C-GT---AA-AT---ACGTTT-GATTTCTG---A-TTGTTTA--CATCTAT----CCTGC-ATGACTT---------GTTTTTTTT-CGC----C---T-AC-T-CAG--AGTAAG-T-G--CGACC--A-GACA--TCAT----TTAAAT--ATT--C-------ACCGGTTAAA--CCAAG-ATGAT-GA-CCA--CA-GCAA-ACACGAAAAAAA----TA-GTTA-TG-------------------ATTGTT-TC-------TTTTAATCC--AAT---AATTGAT-T----T-CA-T-----AGTTCTACTA-C--TATGGCT-GA--GGAAAAGGC---GTCC-TT-GTCTCCAGG--AGC-CATC------ACCGGAAGT-GA--GGTCGCG-CGAG-AC--TGTGT-AGCCCTAagc
gi|12 : aTATCCTTCACACC--CGTCCTTACTAAGAATATAGAAACT-AATGCTT--CCATC-ATT-TGTC-CA-C-TCACC-GAATCTCTGCCA-AA----TTTA---TTA-TAAATAACGAA-TACATTT-ATCC-GT-A--AA--TGAG--AAAA-GGAAAAAGC-GTTT-AATATTTAGCGTTTTTGTA-TTG---A-T-TGTTA--CATTAGTA---CCTGC-ATGGTT----CT-TCCGTTTTTTTTTCGC----C---C-TT-T-CAG--AGTAGA-T-G-GGGAC------GCA--TC------TTAA---TGTC--A--------CCG--TA-----CA-G-ATGATTGA-C-A--CA-CCAA-ACACGAAAAAA-----T--A-TA-TG-------------------TATGGT-TC--------GTTAATCG-AAATAA-AAGTGAT-T----T-CA-TTATAGGGTC-TACTG-C--TAT--TT-AA--G--AAAGGCCCAGTCC-TT-GTCTCCA-GGAAGT-CCGTAC----ACCGGAAGTAGAG-GGTCGCt
gi|17 : aggtggagcttaccggnnnnnnnnnnnnnnnnnnnnnnnnn--AAAA-CG------T-GT---AA-ATT-GGCGTTTTGATA-CTGATTA-T-GTTTcgcg
gi|16 : --AAAA-CG------T-GT---AA-ATT-AGCGTTTTGATA-CCG---A-T--CCTA--CATT----------------GCTT---TC-CCCGTTTTTT---CGC----C---A-AC-T-CGG-GAGTAGA-T-G-AGTACCT-G-GACA--TC------TTACAT--GTT--C-------GCCG--TAAA--CCAAG-ATGAT-GA-T-A--CG-C-AG-ACACGACAAAA-----TA-GCTA-TG-------------------ATTATT-TC-------TTTTAACCC-AAAT---AAGTAAA-T----T-CA-C-----TGT-TTGTTG-C--TAT-GTT-GA--G--AAATAT---G-----------CAA-A--AGT-T-CTCC----ACCGGAAGC-GA--Gtttcatccacccaggagtaaattggtacctggacatcttagatattcaccgtaaaccaagatgatgatacacaaacacgaaaaaatagttaaatccaaacaagtgaatccatagtttgttgctatgctgagtaatgtgcccttgtctccaggagtcttccaccggaagtgagatcgcgcgagaatgtgtagccctat
gi|18 : ccgtgaaatacatTTTTTT--CGC----C---T-AC-T-CAG-GAGTATA---A-GCGACC-AG-GACA--TC------TTAAAT--GTT--C-------ACCG--TAAA--CCAAG-ATGAT-GA-T-A--CA-C-AA-ACACGAAAAAT-----A--GTTA-TG-------------------ATTGTT-TC-------TTTTAATCC-AAAT---AAGTGAT-T----T-CA-T-----AGTC-TACTA-C--TAT-GCT-AA--G--AAAGGC---GTCC-TT-GTCTCCAGG--AGT-C-CTCC----ACCGGAAGT-GA--GGTCGCG-CGAG-AC--TGTGT-AGCCCTactgtagctctattg
gi|17 : ctcgTTTTTT--CAT----C---C-AC-C-CAG-GAGTAAA-T-T-GGTACCT-G-GACA--TC------TTAGAT--ATT--C-------ACCG--TAAA--CCAAG-ATGAT-GA-T-A--CA-C-AA-ACACGAAAAAA-----TA-GTTA------------------------------------------AATCC-AAAC---AAGTGAA-T----C-CA-T-----AGT-TTGTTG-C--TATG-CT-GA--G--TAATGT---GCCC-TTG-TCTCCA-GG-AGT-C-TTCCA----CCGGAAGT-GA--GATCGCG-CGAGAA---TGTGT-AGCCCTA
gi|14 : aaaacgtgtaaattggcgttttgatactgattatgTTC--CGCTATTC---T-AC-TTCAGGGTG-AGA-T-G-GCGACC-AG-AGCA--TCCCATCTTTAA--TTGTTCGACCCCCGCACCGATTAAA--CCAAG-TGGAT-GA-C-ATTTACCTAA-ACA-GAAAATAGTTTGT--ATTG-TA-------------------GTTATA-TCTCTGATTTTTTAATCCTAGATAAAAAGTGATATTATAT-CACT-----AGTC-TACTA-C--TAATGCT-GA--G--AAAGGC---Gt
gi|20 : aaccctcattatataaGAT-T----T-CA-T-----AGTCT-ACTG-C--TATG-CT-AA--G--AAAGGC---GTCC-TT-GTCTCCA-G--GAG-TATTCC----ACCTGAAGT-GA--GGTCGCG-CGAG-AC--TGTGT-AGCCCTActtacggacccactttgttccaggacgtatccccatcaaccggataaaacaaagtcgagggtgaggagactcgacgcgccatggagactgttttgtagcc
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): ATACAACAGACTCGAAATGCTGATCAATATCTATCATAATCTGGAAAGAAATATAAATTAGATATATGTATAGTATTATCTATCAATAATTTAGTATGAAAAAGAAATTGAGACACGGCAATTGAAACTTGTATTTTATTTTACATTAACTTGATCTGGATCTTATAACATGAGATACTGATAACAATGTTTTTTCCGACCTAAAAATATTTAGTGCGTGTTTCAAAATTAACAGATTTGAAGAAGAAAAGCAGTATTCCTATCTGTCCTGGTATGTTACAGGAATTCAATTTAATCCAGTGTCACTTTTCAACAATCCAAAACAACCATCACAGCAGTTTGAGCCTCAGTTATCTTGGGGGGAAAACCTCCTGCAATTTAAAAAAATAAAATTATTGTTGTGCACGAAATAATTCTTTGCATATGTAAGTGGAACTGCAATAATTGCATAGATATGTATCTATACTGAAGAATAATCTCTTGTATTTCCTTCCAATTTTGAAATAAATTCAAACATATTTTTTTTTATAATCAACAAATAGTCCTAGAAGTAGAGTCTCTGAATTTTGATAACCAAAGTTTGGATGGATCAAAGAAACTTTAAATAAGACATCAAATTCACAATCTGGAAGAAAGGATGTTTGACATGATCTAGCTAATTTGATATCTGTTTTATTGATGTCTAAATACATGTATGAATGAATATTAAATTCATGCAAATTATTTTCAATGGAAAGGGTATAGTAAAAAGAATACTATTATGTATTG
Unaligned ( gi|9 ): ATACAACAGACTCGAAATGCTGATCAATATCTATCATAATCTGGAAAGAAATATAAATTAGATATATGTATAGTATTATCTATCAATAATTTAGTATGAAAAAGAAATTGAGACACGGCAATTGAAACTTGTATTTTATTTTACATTAACTTGATCTGGATCTTATAACATGAGATACTGATAACAATGTTTTTTCCGACCTAAAAATATTTAGTGCGTGTTTCAAAATTAACAGATTTGAAGAAGAAAAGCAGTATTCCTATCTGTCCTGGTATGTTACAGGAATTCAATTTAATCCAGTGTCACTTTTCAACAATCCAAAACAACCATCACAGCAGTTTGAGCCTCAGTTATCTTGGGGGGAAAACCTCCTGCAATTTAAAAAAATAAAATTATTGTTGTGCACGAAATAATTCTTTGCATATGTAAGTGGAACTGCAATAATTGCATAGATATGTATCTATACTGAAGAATAATCTCTTGTATTTCCTTCCAATTTTGAAATAAATTCAAACATATTTTTTTTTATAATCAACAAATAGTCCTAGAAGTAGAGTCTCTGAATTTTGATAACCAAAGTTTGGATGGATCAAAGAAACTTTAAATAAGACATCAAATTCACAATCTGGAAGAAAGGATGTTTGACATGATCTAGCTAATTTGATATCTGTTTTATTGATGTCTAAATACATGTATGAATGAATATTAAATTCATGCAAATTATTTTCAATGGAAAGGGTATAGTAAAAAGAATACTATTATGTATTG
Unaligned ( gi|13 ): TCGTTGCATCATGTAAGTGTGAAACTGAAGAAAATTGTATAGAATAGTTATGATCTAGTATGAAGAATAATCAAACTGTATTCCTTTCAATTTTAAACATATTTTTTATATTTATCAAAGCAAATATAGTCTAGAAGATCTCTGAATTCTGATACAAGTTTGATGGATCAAGAACCTTTAAATAAGACACTCAGTCAAAATCTGGAGGGAAAAGAAAGACGATATTTTACAGTGGGGATCTAGCTCTGAGTGTGGATATCTGTTTTATTGTTAATCTAAATACATGTATGATGGGATGAATATGTAAATTCATCAAATTAACTTCATGGAA
Unaligned ( gi|19 ): TATATGAAAATAATCTGCCTGTATTCCTTCAATTTTAATATTCAAAATACTTTTATCATCAAAACAATAGTCCTAAAAGCGGTTCTCTGAAGTTCTGAATAAAAGTTGAT
Alignments
lowQualScore : 1 11 1111 11111 111111 1 33333333333333 11 111 11111 1 111 111 2222222222 222222 1 1 1 11111 11111111 1111 11111 11 22222222222 11 22222222 1 111 1111 11111 1111 22 11 2222 11 11 111 11111 1 111 11111 22222222 1 22 1111 1111 11111111 11111 11 111111 11111 111 1111 1 111111 111111111 11 11 3333333333333333333333333333333 111111 111 1 11 222222222222222222 11 1111
lowQualScore : 5 5 1 88 5 11 5 5 0000 3 777 5 22222 0 999999 0 0 44444444444444 33 111 0 22222 0 777 0 1 888 333 5 5 5 999 555 4444444444 666666 66 5 5 5 1 5 0 66 5 0 5 88 0 4 4 7777 4 66 66 4 9999 4 1 11111 11111111 3333 4 777 66 11111 44 66 999 33333333333 66 333 5 5 0 88 5 5 88888888 5 0 222 4 66 4 4 9999 4 9999 66 4 4 4 2 11111 4 2 4444 777 00 77 6666 9999 777 11 4 22 4 333 4 11111 55 77 3 88 2 000 00000 4 66666666 4 66 4 4 4 66 4 4 5 22 1 3333 4 4 2 1 1111 9 4 8 6 4 0 4 55 7 4 33333333 55 4 4 4 0 55 11111 11 999999 55 5 66 999 22222 1 333 3 0000 88888 6 0 3 3 3 3 6 44 777777 99 333333333 33 44 3 3 3 3 3 44 6 11 3 3 6 3 1111111111111111111111111111111 3 333333 3 000 3 3 6666 3 3 77777 5 3 44 44 3 77 44 555 3 6 3 777777777777777777 3 44 3 999999 3 11 3 7 9999 55 4
lowQualScore : . . . .. . .. . . .... . ... . ..... . ...... . . .............. .. ... . ..... . ... . . ... ... . . . ... ... .......... ...... .. . . . . . . .. . . . .. . . . .... . .. .. . .... . . ..... ........ .... . ... .. ..... .. .. ... ........... .. ... . . . .. . . ........ . . ... . .. . . .... . .... .. . . . . ..... . . .... ... .. .. .... .... ... .. . .. . ... . ..... .. .. . .. . ... ..... . ........ . .. . . . .. . . . .. . .... . . . . .... . . . . . . . .. . . ........ .. . . . . .. ..... .. ...... .. . .. ... ..... . ... . .... ..... . . . . . . . .. ...... .. ......... .. .. . . . . . .. . .. . . . . ............................... . ...... . ... . . .... . . ..... . . .. .. . .. .. ... . . . .................. . .. . ...... . .. . . .... .. .
lowQualScore : 7 7 4 22 0 99 0 0 6666 2 111 0 55555 2 444444 8 4 11111111111111 88 222 4 55555 0 111 4 0 888 888 0 0 0 111 999 9999999999 999999 99 0 0 0 9 0 5 99 0 0 1 22 4 4 4 0000 4 11 11 4 4444 4 1 44444 44444444 1111 4 888 11 11111 33 11 666 99999999999 99 000 0 0 2 88 0 0 11111111 0 0 444 4 11 4 4 7777 4 1111 11 4 4 4 7 11111 4 7 2222 888 11 99 7777 4444 888 11 4 22 4 222 4 11111 66 66 3 11 9 555 00000 0 11111111 4 11 4 4 4 11 4 4 8 77 9 9999 4 4 0 9 9999 7 6 9 7 0 8 0 55 3 0 77777777 55 0 0 0 8 00 66666 00 555555 55 7 44 444 77777 4 666 3 4444 33333 7 0 3 3 3 3 7 66 555555 22 333333333 88 66 3 3 3 3 3 66 7 22 3 3 7 3 8888888888888888888888888888888 3 666666 3 444 3 1 5555 1 1 77777 9 1 22 66 1 33 22 444 3 7 3 333333333333333333 3 66 3 666666 3 22 6 3 1111 55 0
consensus : TGCA-AG-TA-CTAGTTATT-GAA-G--TAAG-T-TACAC----AATA-A-CAGA-AA-----GAAAGATGTCCA------AGTNGATAC---T--AA---TT-AAAT--ATATTTTTAT-----CAT-ATTG-T-TTAATT---TTC---AT-AT-TT-C--GGTA-A-GA---TA-----TTTTTTTT----AAA--GTC-TGG-CCT-ATGC-AAG--GTT-A-TGACGA-AAAATAGAG-CCC-TTATT--A-TGA-GCATATGA--TACATG--A-AGT----CC-ACAATATNT-T-GTA---GG--GTC--T-G-CA---CAT--TT-----CTAN-GACC--CCCCC--CCC---CC------GTG--TGAATG-A-CGAT--AC-TGT-CC--------TA-TATCCATA-TT-T-CT-ATTT--TTTA-AC-ATA---AT-A-G--CA--G-TTGTCAT-CAAATT-CCAGGAATCCT-----TTA-TAAGTACT--TAAAAAGC---TTTTCAATCCGGTACCG----TA----C---ATCAG-ATCCGC-A--TT-CTCTCGTAA-TGGTGGTG-GT-----G-GGGGTTGGG-GGTACCCTTTATCCTTCACAC--CCGTCCTTA-----AA-ATAGG-NA-CTTAATGC-TTC--TAT-CA-TT-T--TCA-C-TCACCAGAATCTCTTGCAAA----T-GTA-AATTTA-TAATTAACNAAACACATTT-ATCCCG-TGAAAT-GA--A-AAAA-GG------C-GT--AA-A-TT-AGCGTTTTGATN-CTGA-T-GTTTA--CATTAGTA---C--CTGC-NTGGTTT--CC-CCCG--TTTTTTT-CGC----C---T-ACT-CAG-GAGT-AG-A-TG-GCGACC-AGGACA--TC------TTAAAT--GTT---------CACCG--TAAA--CCAAG-ATGA-TG-A-C-A--CA-C--AA-ACACG-AAAAAA-TAGTTA-TG-------------------ATTG--------TT-TC-----TTTTAATCC-AAAT---AA-GTGAT-T----T-CA-T-----AGTCTTACTG-C--TATGGCTG-A--G--AAAGGC---GTCC-TT-GTCTC-CAGG--AG---T-CATTCCAAC-CG--GA-A------GT-GA--GGTCG-CG-CGAGA---AC--TGTGT-AGCCCTA
Reference ( family-675 ) : TGCA-AG-TA-CTAGTTATT-GAA-G--TAAG-T-TACAC----AATA-A-CAGA-AA-----GAAAGATGTCCA------AGTNGATAC---T--AA---TT-AAAT--ATATTTTTGT-----CAT-ATTG-T-TTAANT---TTC---AT-AT-TT-C--GGTA-N-GA---TA-----TTTTTTTT----AAA--GTC-TGG-CCT-ATGC-AAG--GTT-A-TGACGA-AAAATAGAG-CCC-TTATT--A-TGA-GCATATGA--TACATG--A-AGT----CC-ACAATATNT-T-GTA---GG--GTC--T-G-CA---CAT--TT-----CTAN-GACC--CCCCC--TCC---CC------GTG--TGANTG-A-CGAT--AC-TGT-CC--------TA-TATCCATA-TT-T-CT-ATTT--TTTA-AC-ATA---AT-A-G--CA--G-TTGTCAT-CAAATT-CCAGGAATCCT-----TTA-TAAGTACT--TAAAAAGC---TTTTCAATCCGGTACCG----TA----C---ATCAG-ATCCGC-A--TT-CTCTCGTAA-TGGTGGTG-GT-----G-GGGGNTGGG-GGTACCCTTTATCCTTCACAC--CCGTCCTTA-----AA-ATAGG-AA-CTTAATGC-TTC--TAT-CA-TT-T--TCA-C-TCACCAGAATCTCTTGCAAA----T-GTA-AATTTA-TAATTAACNAAACACATTT-ATCCCG-TGAAAT-GA--A-AAAA-GG------C-GT--AA-A-TT-AGCGTTTTGATN-CTGA-T-GTTTA--CATTAGTA---C--CTGC-NTGGTTT--CC-CCCG--TTTTTTT-CGC----C---T-ACT-CAG-GAGT-AG-A-TG-GCGACC-AGGACA--TC------TTAAAT--GTT---------CACCG--TAAA--CCAAG-ATGA-TG-A-C-A--CA-C--AA-ACACG-AAAAAA-TAGTTA-TG-------------------ATTG--------TT-TC-----TTTTAATCC-AAAT---AA-GTGAT-T----T-CA-T-----AGTCTTACTA-C--TATGGCTG-A--G--AAAGGC---GTCC-TT-GTCTC-CA-G--AG---T-CATTCCAAC-CG--GA-A------GT-GA--GGTCG-CG-CGAGA---AC--TGTGT-AGCCCTA
gi|1 : TGCACAG-TA-CTAGTTATT-GAA-G--TAAG-T-TACAC----AATA----AGA-AG-----TGAAGATGT-CA------AGT-GAT-C---TAAAA---TTAAAAG--ACATTTTAGT-----CAT-ATTG-T-ATAAGTTTCTTC---AT-ATCTT-C----TA---GA---AA-----TTTTTTTTTTTAAAA--GTC-TGGTCCT-AT-----A--GTT-A-TGACAAGAAAATAGAG-CCCATTGTT--AGTGA-GCATATGAATTACATG--A-AGT----CC-ACAATATATCT-GT-----G--GTC--T-G-CA---CAT--TTTCTCATTGG-AACC--CCTCC--CCCGA-CTTACAAAGAG--TGATTG-ATTGGTC-AC-TATACC--------TA-TATCCATATTT-T-CTGATTTTATTTA-ACAATAGATAT-A-GAACAGCG-TTGTCAT-CAGATTCCCAGGAATTCA-----TTG-TATCTACTTGTAAACAGC---TTTTC-ATCC-GTACCGGTACTA----C---AT--GCATCCGCGA--TTCCTCTGGTA---GGTGGTG-GTGTTGGG-GGGGGGGGG-GGTAACCTTTATCCTCCACACCGCCGTCCTTA-----AA-ATAGG-TA-TT--ATGC-CTC--ATT-CATTT-T--TCA-C-TCACCCAAATCTC--GAAGA----T-GTA-AATTTA-T-ATTAACTAAACACATTT-AT-CCG-TGAAAT-GA--A-GAAATGG------CGGT--AA-T-CT-AGCG-TTTGATT-CTGATT-GTTTA--CATTAGTA---CCACTAT-TT--TTA--CCACTCG--TTTTTTG-CAG----CATAT-ACTACAGAGAGC-A--A-TG-GCTACC-AGGACAATCC------TTAAA---GTC---------TACTGGCTAAATTCCAAGTATGA-GC-A-T-A--C--C--AACACACG-AAAAAA-TAGTCC-TGGATAGACGGGCATACAGCAATTA--------TTGTC-----TTTTAACCA-AAAT---AATGTGAT-T----TCCA-T-----AGTCCTACTA-CATCATGGCTG-ACTG---AAGGC---GTCC-TT-GTCTTGCAGG--AGCTCC-CA-TCAAACACGCTGACATGATACGT-GA--GGATG--G-CGAGAAGCAC--TGTTT-AGCC
gi|10 : aaaattattgttgttgcaagaacataatcatagcattatgataaggtgcgaaactgccagcaaatctgttgatatggataataatctcccttaaattcactatcagatacatgtatattgaatgaggaagaaataatattcctgtatcctatattcaattaataatttcaactaacgaattttttttcacttcatcaacaaactgtcctagagtgagtatcctctgaatttctgacataatcaagagggctacttgatggatcaagatcacctatttaaactaaaaagaaactgagctcaataggatcacgcagaaaatctggacgagtagaaaagtgacgacttgtaccatgggaatacgttacctttcaaattctttgaatatctgtatttaaaagctggttgttttattgatttatatctaaatacatgtatggaattacgtgggagatgtactgagaagacgtactcaattcattccaacctaatgagttacatgaaaggtggtattaggttttgatgaataataataattatttgttgaattaattacagtaccatagagatcacactctgtctccacccctagtttggaatatgaactaagctcacctgactaccaatattctaaatgaagacgtggaaaaaaccataattggaatgcccccttgggcattgacctacacctgcagtcgaataaacgctgatatttattcataatagtcacatagactcattattaggttcatgctttggccattcttgacatggaaataaaTGCA-AG-TAACTGGTTATT-GAA-G--TA-G-T-TACAC----A-TA-A-CAGA-AA-----AAGAAGTGTCCAG-----AGTGGACAC---T--AAAAATT-AAAT--AT---TTTAT-----CAT-ATTG-T-TAGATT---TTCCCTAT--T-TT-CAGGGTA-ATGA---TA-----TTTTTA------AAA--GTA-TGG-CCT-ATGC-AAG--GTT-A-TGACGA-AAAATAGAG-TC--TTATT--A-TGA-GCATATGA--T-CTTG--A-AGT----CC-ACAATATTC-T-GTA---AG--GCT--C-G-CA---CAT--TT-----CTAT-GAAC--CCCC
gi|11 : aaaagaatcatctcaaaatctggagagaaaaaaaggagttgttgtaacatgggacatctagctatttgatatagtgttttttgatatctaatacatgtatgatgtggattgaactacaaattccatcaaattaacttcatggaaatggtactagtaaataaatactattgatgtgaaattaattagcatgataaatctgtcatatagaaatcttgccctaattctaaaactgaaacccccattgggccaattgacaccaaccagctaaaaagattattttttccataattgtaactaacatgctcttgcacttctgacatggaaAAGGC---TTTTCA-TCCGAT-CCG----TA----CTACATCAG-ATCCGC-A--TT-CTCTCG-GA-TG-TGGTT-GT-----G-----TTGG----TACC--TTATCCCT-ACAA--CCGTCCT-A-----AA-AT--G-TA-CT--ATGC-TTC--TAT-CA-TT-T--TCA-C-TCACCA-AGTCTCT-GCAAA----T-GCC-AATT-A-TA-TTAACTAAACACATTTTATCC-G-TGAAATTGA--A-GAAA-GG------C-GT--AA-A-T---ACGTTT-GATTTCTGA-TTGTTTA--CATC--TAT--C--CTGC-ATGACTT--------G--TTTTTTTTCGC----C---T-ACT-CAG--AGT-AA-G-TG--CGACC-AG-ACA--TCAT----TTAAAT--ATT---------CACCGGTTAAA--CCAAG-ATGA-TG-A-CCA--CAGC--AA-ACACGAAAAAAA-TAGTTA-TG-------------------ATTG--------TT-TC-----TTTTAATCC--AAT---AA-TTGAT-T----T-CA-T-----AGTTCTACTA-C--TATGGCTG-A--GGAAAAGGC---GTCC-TT-GTCTC-CAGG--AG---C-CATC---AC-CG--GA-A------GT-GA--GGTCG-CG-CGAG----AC--TGTGT-AGCCCTAg
gi|12 : TATCCTTCACAC--CCGTCCTTACTAAGAATATAGA-AA-CT-AATGC-TTC--CAT-CA-TT-TGTCCA-C-TCACC-GAATCTCTGCCAAA----T-TTA----TTA-TAAATAACGAA-TACATTT-ATCC-G-T-AAAT-GA--G-AAAA-GGAAAAAGC-GTTTAATA-TTTAGCGTTTTTGTA-TTGA-T-TGTTA--CATTAGTA---C--CTGC-ATGG-TT--CT-TCCGTTTTTTTTT-CGC----C---C-TTT-CA--GAGT-AG-A-TG-GGGAC-----GCA--TC------TT-AAT--G-T---------CACCG--T--A--C--AG-ATGATTG-A-C-A--CACC--AA-ACACG-AAAAAA-TA--TA-TG-------------------TATG--------GT-TC------GTTAATCG-AAATAA-AA-GTGAT-T----T-CA-TTATAGGGTC-TACTG-C--TAT--TTA-A--G--AAAGGCCCAGTCC-TT-GTCTC-CA-GGAAG---T-CCGTAC-AC-CG--GA-A------GTAGAG-GGTCGCCG-CGt
gi|14 : aggtggagcttaccggnnnnnnnnnnnnnnnnnnnnnnnnnTTC-CGCTATTC---T-ACTTCAG-G-GTGAG-A-TG-GCGACC-AGAGCA--TCCCATCTTTAATT--GTTCGACCCCCGCACCGATTAAA--CCAAG-TGGA-TG-A-C-ATTTA-CCTAA-AC----AGAAAA-TAGTT--TGT------------------ATTGTAGTTATATC-TCTGATTTTTTAATCCTAGATAAAAA-GTGATATTATAT-CACT-----AGTC-TACTA-C--TAATGCTG-A--G--AAAGGC---G
gi|15 : aaccctcattatataaG-CCC-TTATT--A-TGA-ACATATGA--TACATG--A-AGT----CC-ACAATATTT-T-GTA---GG---TC--T-G-CA---CAT--TT-----CTAC-GACC--CCCCCCCTCC---CC------GTG--TTGATG-A-CGATTTAC-TGT-CC--------TA-TATCCATA-TT-TTCT-ATTT--TTTA-AC-AT----AT-AGG--CA--G-TTGTCAT-CAAATT-CCAGAAATCCT-----TTA-TAAATACT--T-AAAAGC---TTGTC-ATCC-GTACCG----TA----C---ATCAG-ATCTGC-A--TT-CTCTCGT-A-TGGTGGTG-GT-----G-GGGGTTGGG-GGTG-CCTTTATCCTTCACA---CCGTCCTTA-----AA-ATAGcttacggacccactttgttccaggacgtatccccatcaaccggataaaacaaagtcgagggtgaggagactcgacgcgccatggagactgttttgtagcc
gi|16 : CCG-TGAAAT-AC--ATAAAA-CG------T-GT--AA-A-TT-AGCGTTTTGATA-CCGA-T-------------------C--CTAC-ATTGCTT--TC-CCCG---TTTTTT-CGC----C---A-ACT-CGG-GAGT-AG-A-TG-AGTACC-TGGACA--TC------TTACAT--GTT---------CGCCG--TAAA--CCAAG-ATGA-TG-A-T-A--CG-C--AG-ACACG-ACAAAA-TAGCTA-TG-------------------ATTA--------TT-TC-----TTTTAACCC-AAAT---AA-GTAAA-T----T-CA-C-----TGT-TTGTTG-C--TAT-GTTG-A--G--AAATAT---G-----------C-AA-A--AG---T-T-CTCC-AC-CG--GA-A------GC-GA--G
gi|17 : -AAAA-CG------T-GT--AA-A-TT-GGCGTTTTGATA-CTG------------ATTA---------------TG----------------TTTTTT-CAT----C---C-ACC-CAG-GAGT-AA-A-TT-GGTACC-TGGACA--TC------TTAGAT--ATT---------CACCG--TAAA--CCAAG-ATGA-TG-A-T-A--CA-C--AA-ACACG-AAAAAA-TAGTTA------------------------------------------------AATCC-AAAC---AA-GTGAA-T----C-CA-T-----AGT-TTGTTG-C--TAT-GCTG-A--G--TAATGT---GCCC-TT-GTCTC-CAGG--AG---T-C-TTCC-AC-CG--GA-A------GT-GA--GATCG-CG-CGAGA---A---TGTGT-AGCCCTAactgtagctctattg
gi|18 : TTTTTT-CGC----C---T-ACT-CAG-GAGT-AT-A--A-GCGACC-AGGACA--TC------TTAAAT--GTT---------CACCG--TAAA--CCAAG-ATGA-TG-A-T-A--CA-C--AA-ACACG--AAAAA-TAGTTA-TG-------------------ATTG--------TT-TC-----TTTTAATCC-AAAT---AA-GTGAT-T----T-CA-T-----AGTC-TACTA-C--TAT-GCTA-A--G--AAAGGC---GTCC-TT-GTCTC-CAGG--AG---T-C-CTCC-AC-CG--GA-A------GT-GA--GGTCG-CG-CGAG----AC--TGTGT-AGCCCTt
gi|2 : ctcgTGCA-AG-TAACTAGTTTAT-GAA-G--TAAG-T-TA-AC----AATA-A-CAGA-AA-----AAA---TGTCCA------AGT-GATATAAAT--AA---TT-AAAT--AT---TTTGT-----CATTGCTA-TGTTAATT---TTCT--AT-AT-TT-C--AGCA-A-GA----A-----TTTTTTTT----AAAAAGTC-TGG-CTTCGTGC-AAGTGGCTCA-GAACGA-AAGA--GTG-CCA-TGATTCAA-TGA-GCATATGA--TACATGTTATAGT----CT-ACACTATC----GTA---GG---TC------CA---CAT--GT-----CTAGTGACC--CCTCC--CCC---CC------ATG--TTGATG-A-CATC--AC-TGC-CTA-------TA-TATCCATA-AT-T-CT-ATTT--TT-A-AC-ATA---AT-AAG--CA--GATTGCAAT-CAAATT-CCAGGAATCCT-----TTACTAAGTACT----AAAACC---TTTTCA-TCCG-TACCG----TAGCTAC---ATCA--ATCCGC-A--TT-CTCTGGTAAGTGGTGGTGTGT-----T-GGGG--GGG-GGTACC-TTTATCTACCAC-----CGTCCTTA-----AA--TAGG-TA---TA------TC--TCT-CA-TT-C--TCA-C-TCACCA-AGTCTC--GCAAAA---T-GTA-AATT-A-TACTTAAC-AAACA-ATTT-ATCCCG-TGAAAT-GAAGA-AAAA-GG--------GT--AA-A--T-AGCGTTTTGATT-CTGA-T-ATTTA--CATTA-TA---C--CTGCATTGAGTT--AC-CTCG-----TTGT-CGCG---C---T-ACG-CCA-GAGT-AGAA-TG-CTGACC-AGGACA--TC------TTAAAT--GTT---------CACTG--TAAA--CC-AG-AT-A-T--A-C-A--CA-C--AA-ACACG-AAAAAA-TAGTTA--G-------------------AT----------TT-TC------TTTAATCT-AAAT---AA-GTGCT-T----T-CA-T-----AGTC-TA-TA-C--TAT--CTGAA--A--AAAGGC---TCCC-TT-GTCTC-CA-G--AT---C-CATCACA---CG-----A------AT-GAT-CGTCG-CG-CGAG----ACTTTGTGT-AG
gi|20 : atatcattgcattatagtagaataacccatgaataatttgtataaatattatatatcaatataagaataaataccccctgtattccttcaattttaaaaattcaaaaacatattttcttatatcaacaatagtctagagtaagactcctgaattatgattcaagttcgaatgttgatgatcagcgaacctttaaatgaaagacatcacttcaaaatctggaaaaaaggatttgttagcatgggatttagcattggataatctttttgattgataaatatatagatgttattaatgatgaagattctaagtataaatctcaaaaatatgaagggtatagtaaaaaaatactattatgtaatataatgtatgcgaaattaatatgtcgttatattagataatcttgcctacattcttaaaatggacataaacccctggcattgacaccactcagtcaaaatagattattgtatcatcatattgcatacataagactcgatgtatggctcctgcttatctctagatgcattgctgacatgaaaaGAT-T----T-CA-T-----AGTCT-ACTG-C--TATG-CTA-A--G--AAAGGC---GTCC-TT-GTCTC-CAGG--AG---T--ATTCC-AC-CT--GA-A------GT-GA--GGTCG-CG-CGAG----AC--TGTGT-AGCCCTA
gi|21 : -T-CT-ATTT--TTTA-AC-ATA---AT-ATA--CA--G-TTGTCAT-CAAATT-CTAGGAATCCT-----TTA-TAAGTACT--TAAA
gi|3 : TGCA-AG-TA-CTAGTTATT-GA--G--TAAG-TGTACAC----A-TACA-C-----------GAAAGATGTCCA------AGTGGATTC------AA------AAATTAATATTTT-GT-----CAT-ATTG---TTAATT---TTC---AT-AT-TCAT--GGCA-A-GA----A-----TTTTTTTTA---AAA--GTC-TGG-CCT-ATGC-CAG--GTC-ATTGACG--AAAATAG----CC-ATA-T--A-TGA-GC-TATGA--TACATG--A-AGT----CCAACAATATTC-T-GTA----G--GTC--T-G--A----AT--TT-----CTAT-GACC--CCCCC---CC---CA------GTG--T---TGTG-CAAT--TC-AAT-CTA-------TA-TATCCATATTT-T-CT-A-TT--TTTA-AC-ATA---AT-A-G--CA--G--TGTCAT-CAAATT-CCAG--ATCCA-----TT--TAACTATT--TAAAAAGC---TTTTC-ATCC-GTACCGTAC-TA----C---ATCAG---CCGC-A--T---TCTTGT-A-TGGTGGTG-GT-----GTGGGGGGGGG-GGT---CTTTATCC-ACACAC--CCGTTCCTT-----AA-ATAGGTTA-C-TATTGCTTTC--TATCCA-TT-T--TCACC-TCACCA-AGTCGC-TGC--A----TGGTAGAAATTA-TATTTAATAAACCACATTT-AT-CCG-TGAAAT-GA--AGAAAA-AG------C-GT--AA-A-TT-AG-GTTTTGATC-CTGA-T-G-TTA--CATTAG-A---C--CTGC-ATTGTTTGACA-CTCG---TGTTTG-CGC----T---A-ACT-CAG-GAGT-AG-ATTG-GCGACA-GAGACA--TC------TTAAAT--GTT---------CCCTG--TAA----CAAG-AT-A-TGCA-C-A--CA-G--AC-ACACG-AAAAAATTAGTTA-TG-------------------A-TG--------TT-TC-----TTTTAATCA-CAAT---AA-GTCTT-A----T-CA-T-----AGTC-TACTACC--TATG--TG-AC-G--AAAGGC---GTCC-TT-GTCTC-CA-G---G---TGCAT--CA---CG--GA-A------GT-GA--GGTCG-CG-CG-GG---AC--TGTGT-AGCCTTAgc
gi|4 : attgaagatatccctgtattccttcaatttaataaattcaacatattttttttatcaacaaatgtcttcagagtagatcttgaatttgatcaatttgaagtttgatggaatcaagaaccgtttaaattaaagacatcattcaaatctggagaaaaaaggagtttgtcacaggatcatagctatttgatatcgtttattgattatctaaataccatgtatgtgtgatgtctaatagactatataagtctcatcaaatctactcatgataaggtatagttaaaaaaatactagtattgtgaattaatgagcctaataatctgtcactatagaaacttgccctaattctaatgacagaaccccattgcggcagtgacacccactagtcaaagattatttattgcatttggtaactagatcatttaggtcatgcgaatttgcattctgacatggaaaaTT-GAACGCCTAAG-T-TACACTCTCAATA-AACAGA-AAAAGAAGAAATATGTCCACTAAAAAGTAGATAC---T--AA----A-AAATTAATATCTTTATAACAACATAATTGTT-TTTATT---TTC---ATCAT-TT-C--AGGAGC-GAGATTAATTGTTTTTTTCT----AAA--GCCTTGG-CCT-ATGCGAAG--GTC-ATTGGCG--AAAATAGAGTCCC-TTATT----TGAGGCATATGA--TACATG--A-AGTTCTCCT-ACAATATTT-TGGTATTTGG--GTCTTT-GTCAGTTTATTGTT-----CTCA-GATCCGCCCCC--TCC---CCCCA---GTG--TGAGTG-A-CGATTCACTTGT-CCTATACATGTA-TATCCATA-TTGT-CT-ATTT--TTTA-AC-ATA---ATAA-G--CA--G-TTGTCAT-CAAATT-CCAGGAATCCTTTAAATTA-TAAATACT--T-AAAAGC---TTTTC-ATCC-GTACCG----TA----C---ATCAG-ATCCGC-A--TT-CTCTCGT-A-TGGTGGTG-GT-----G------TTGG-GGTA-CCTTCATCCTTCACA---CCGTCCTTA-----AA-ATAGG-AA-CT--ATGC-TTC--TAT-CA-TT-T--TCA-C-TCACCA-AATTTC-TAC-AA----T-GGA-AA-TTA-T-ATTAACTAA--ACATTT-AT-CCG-TGAAAT-GG--A-t
gi|5 : tatacgaagaataatctcctgtattccttcatcaaattcaaaatatttttttatatcaacaaatagtctagatcgagtagattctctgaatttctgatacaagtttgatggaatcaagaactttaaataaagacattcagttcaaaaaatctcggagtgatgtgaaagtttttaccaaaagggagttttgtacaattgggatctttagctagttaatgtgatatcctgttttgtactgattatctaacatacatgtatgatgtatgtctgtatgaatacttaaacctcctcatcaaatctaacttcataaatgggaaaatgggtataggctttaataacataactattaattgccgtgagcttaagttaatgtagccatgataattcgtcatatagaaaaatcttgccctaatttcttaaatgactgaaacccccattgggcgaatttaaatgagacccactcagttcaaaaagatatctgtttttcagtaattatgttaactaggaattcattctaggcttcatgcttgtgcgctatttctgtcaatgcgccaaaaatgcccatataggttctattacacTGCA-AGGTA-CTAGTTATTTGAA-GC-TAAGCT-TACAC----AATA-A-CAGATAA-----AGAAGA-GTCCA------A-TTGATAC---T--AAAA-TT-AAAT--AT----TTAT-----CAT-ATTG-T-T-AATT---TTC---AT-AT-T--C--AGTA-A-GA---T------TTTTTTTT----AAA--GTC-TGG-CCT-AGCC-AAG--GTT-A-TGACGA-AAA-TA-AG-CCC-TTATC--A-TGA-GCATACGA--TACAGG--A-AGT----CC-ACAATATC----GTA---CGCCGTC--T-G-CA---CAT--TT-----CTAT-GACC--CCCCC--CCCTTTCC------AGGGTTGATTC-A-C------------CC--------TAATATACAT--TT-C-CT-ATTT--TAAACAC-ATA---AT-A-AGCCA--T-TCGTCATTCAGATT-C-AGAAATCAT-----TTA-GAAGTACT---GAAAAGCCCTTTTTCA-TCC--TACCGATACTA----C---ATCAG-ATCCGC-A--TT-CTCTCGTGG-TGGTGGTG--T-----G-GTGGGCGGGAGGTACCTTATATCCTTCACAC--CGGCCTTAA-----AA-ATAGG-TA-CT--ATGC-TTTCTTAT-CA-TTGT--TCA-CCTCACCAAGATCTCT-ACAAAATGCT-ATA-AATTTA---ATTAAT--AACACATTTCATCACGCTGAAAT-GA--A-GAAA-GG------C-GT--AA-AATT-AGCG-TTTGATT-CTGATT-GCTTA--CATTAGTA---C--CTGC-AT-GTTT--AC-CTCG--TTTTTTT-CGC----C---CAACT-CA--GAG--AG-A-TGTGCGACC-AGGACA--TCT-----TTAAAT--GTT---------CACCG--TAAA--CCAA--ATGA-TG-ACC-A--TA-C--AA-ACACG-AAAAAATTAGTTAGTG-------------------TTTG--------CT-TC-------TGAATCC-AAAT---AA-GTGAT-T----T-CA-T-----AGTC-TACTA-C--TATGCCTG-A--G--AAAGG----GTCCATT-G-CTC-CAGG--AG---TCCAATC--AC-CG--CA-A-------T-GAGGGGTCG-CG-CGCAA---AC--TGTGTCAGCCCgcattgaaaatttgtatttaatttcattg
gi|6 : tgttttattggatcatcttagaatacatgtatgatgttgctgatgtctgaatgaagtataattcatcaacttaacttcatggaaaggtatagttaaaacaaacttattagtgaattgaatgtagccatgataaagctgctcatatagaaaatctggccctcaattcttaaatgactgaaacccccaacttgggcgaattgacaccactcagtcagaacattttcataattgtctacgctatgactaatttacgctcatgctttgcattccgacatggaaaaaaTGCA-AG-TA-CTAGTTAT--GAA-G--TTAG-T-TACAC----AATA-A-CAGA-AA-----GAAAGATGTTCA------AGTTGATAC---T-------TT-AAAT--ATATTTTTAT-----CAT-ATTG-T-TTAAAT---TTC---AT-AT-TT-C--GGTA-T-GA---TA-----TTTTTT-------AA--GTCCTGG-CCT-AT-C-ATG--GTT-A-TG-CGA-AAAATGGAG-CCC-TTATT--A-TGA-ACATATGA--TACATG--A-AGT----CC-A-AATATGT-T-GTA---GA--GTC--TTG-CA---CAT--TT-----CTAAAGACC--CCCCC--TCC---CC------GTG--TGAATG-A-CGAT--AC-TGT-CC--------TA-TATCCATA-TT---CT-ATTT--TTTA-AC-ATA----T-G-G--CA--G-TTGTCAT-CAAATT-CCAGAAATCCT-----TTA-TAAATACT--TAAGAAGC---TTGTCAATCCGGTACCG----TA----C---ATCA--ATCTGC-AATCT-CTCTCGTAA-TGGTGGTG-GT-----G-GGGGTTGGGTGGTGCCCTTTATCCTTCACAC--CCGTCCTTA-----AA-ATAGG-AAACTTAACGC-TTC--TAT-CA-TT-T--TCA-C-TCACCAGAATCTCTTGCAAA----T-GTA-AATTTAATAATTAACGAAACACAATT-ATCCCG-TCAA-T-GA--A-AAAA-GG------C-GT--AA-A-TT-AGCGTTTTGATG-CTGA-T-GTTTAAGCATTAGTAAAGC--CT-C-TTGGTTT--CC-CCCG--TTTTTTT-CGC----C---T-ACT-CAGTGAGT-AG-A-TG-GCGACCCAGGACA--TC------TTAAATTTGTT---------AACCG--TAAA--CCAAG-ATGA-TG-A-C-A--CA-CT-AA-ACACG-AAAAAA-T-GTTA-TG-------------------ATTG--------TT-TC-----TTTTAATCC-AAAT---AC-GTGAT-T----T-CA-T-----AGTCTTACTG-C--TATGGCTA-A--G--AAAGGC---GTCC-TTGGTCTC-CA-G--AG---T-TATTCCAAC-CG--GA-A------GT-GA--GGTCG-CGCCGAGA---AC--TGTGT-AGCCCTA
gi|7 : TGCA-AG-TA-CTAGTTAT--GAA-G--TTAG-T-TACAC----AATA-A-CAGA-AA-----GAAAGATGTTCA------AGTTGATAC---T-------TT-AAAT--ATATTTTTAT-----CAT-ATTG-T-TTAAAT---TTC---AT-AT-TT-C--GGTA-T-GA---TA-----TTTTTT-------AA--GTCCTGG-CCT-AT-C-ATG--GTT-A-TG-CGA-AAAATGGAG-CCC-TTATT--A-TGA-ACATATGA--TACATG--A-AGT----CC-A-AATATGT-T-GTA---GA--GTC--TTG-CA---CAT--TT-----CTAAAGACC--CCCCC--TCC---CC------GTG--TGAATG-A-CGAT--AC-TGT-CC--------TA-TATCCATA-TT---CT-ATTT--TTTA-AC-ATA----T-G-G--CA--G-TTGTCAT-CAAATT-CCAGAAATCCT-----TTA-TAAATACT--TAAGAAGC---TTGTCAATCCGGTACCG----TA----C---ATCA--ATCTGC-AATCT-CTCTCGTAA-TGGTGGTG-GT-----G-GGGGTTGGGTGGTGCCCTTTATCCTTCACAC--CCGTCCTTA-----AA-ATAGG-AAACTTAACGC-TTC--TAT-CA-TT-T--TCA-C-TCACCAGAATCTCTTGCAAA----T-GTA-AATTTAATAATTAACGAAACACAATT-ATCCCG-TCAA-T-GA--A-AAAA-GG------C-GT--AA-A-TT-AGCGTTTTGATG-CTGA-T-GTTTAAGCATTAGTAAAGC--CT-C-TTGGTTT--CC-CCCG--TTTTTTT-CGC----C---T-ACT-CAGTGAGT-AG-A-TG-GCGACCCAGGACA--TC------TTAAATTTGTT---------AACCG--TAAA--CCAAG-ATGA-TG-A-C-A--CA-CT-AA-ACACG-AAAAAA-T-GTTA-TG-------------------ATTG--------TT-TC-----TTTTAATCC-AAAT---AC-GTGAT-T----T-CA-T-----AGTCTTACTG-C--TATGGCTA-A--G--AAAGGC---GTCC-TTGGTCTC-CA-G--AG---T-TATTCCAAC-CG--GA-A------GT-GA--GGTCG-CGCCGAGA---AC--TGTGT-AGCCCTA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATACAACAGACTCGAAATGCTGATCAATATCTATCATAATCTGGAAAGAAATATAAATTAGATATATGTATAGTATTATCTATCAATAATTTAGTATGAAAAAGAAATTGAGACACGGCAATTGAAACTTGTATTTTATTTTACATTAACTTGATCTGGATCTTATAACATGAGATACTGATAACAATGTTTTTTCCGACCTAAAAATATTTAGTGCGTGTTTCAAAATTAACAGATTTGAAGAAGAAAAGCAGTATTCCTATCTGTCCTGGTATGTTACAGGAATTCAATTTAATCCAGTGTCACTTTTCAACAATCCAAAACAACCATCACAGCAGTTTGAGCCTCAGTTATCTTGGGGGGAAAACCTCCTGCAATTTAAAAAAATAAAATTATTGTTGTGCACGAAATAATTCTTTGCATATGTAAGTGGAACTGCAATAATTGCATAGATATGTATCTATACTGAAGAATAATCTCTTGTATTTCCTTCCAATTTTGAAATAAATTCAAACATATTTTTTTTTATAATCAACAAATAGTCCTAGAAGTAGAGTCTCTGAATTTTGATAACCAAAGTTTGGATGGATCAAAGAAACTTTAAATAAGACATCAAATTCACAATCTGGAAGAAAGGATGTTTGACATGATCTAGCTAATTTGATATCTGTTTTATTGATGTCTAAATACATGTATGAATGAATATTAAATTCATGCAAATTATTTTCAATGGAAAGGGTATAGTAAAAAGAATACTATTATGTATTG
Unaligned ( gi|9 ): ATACAACAGACTCGAAATGCTGATCAATATCTATCATAATCTGGAAAGAAATATAAATTAGATATATGTATAGTATTATCTATCAATAATTTAGTATGAAAAAGAAATTGAGACACGGCAATTGAAACTTGTATTTTATTTTACATTAACTTGATCTGGATCTTATAACATGAGATACTGATAACAATGTTTTTTCCGACCTAAAAATATTTAGTGCGTGTTTCAAAATTAACAGATTTGAAGAAGAAAAGCAGTATTCCTATCTGTCCTGGTATGTTACAGGAATTCAATTTAATCCAGTGTCACTTTTCAACAATCCAAAACAACCATCACAGCAGTTTGAGCCTCAGTTATCTTGGGGGGAAAACCTCCTGCAATTTAAAAAAATAAAATTATTGTTGTGCACGAAATAATTCTTTGCATATGTAAGTGGAACTGCAATAATTGCATAGATATGTATCTATACTGAAGAATAATCTCTTGTATTTCCTTCCAATTTTGAAATAAATTCAAACATATTTTTTTTTATAATCAACAAATAGTCCTAGAAGTAGAGTCTCTGAATTTTGATAACCAAAGTTTGGATGGATCAAAGAAACTTTAAATAAGACATCAAATTCACAATCTGGAAGAAAGGATGTTTGACATGATCTAGCTAATTTGATATCTGTTTTATTGATGTCTAAATACATGTATGAATGAATATTAAATTCATGCAAATTATTTTCAATGGAAAGGGTATAGTAAAAAGAATACTATTATGTATTG
Unaligned ( gi|13 ): TCGTTGCATCATGTAAGTGTGAAACTGAAGAAAATTGTATAGAATAGTTATGATCTAGTATGAAGAATAATCAAACTGTATTCCTTTCAATTTTAAACATATTTTTTATATTTATCAAAGCAAATATAGTCTAGAAGATCTCTGAATTCTGATACAAGTTTGATGGATCAAGAACCTTTAAATAAGACACTCAGTCAAAATCTGGAGGGAAAAGAAAGACGATATTTTACAGTGGGGATCTAGCTCTGAGTGTGGATATCTGTTTTATTGTTAATCTAAATACATGTATGATGGGATGAATATGTAAATTCATCAAATTAACTTCATGGAA
Unaligned ( gi|19 ): TATATGAAAATAATCTGCCTGTATTCCTTCAATTTTAATATTCAAAATACTTTTATCATCAAAACAATAGTCCTAAAAGCGGTTCTCTGAAGTTCTGAATAAAAGTTGAT
Alignments
lowQualScore : 1 11 1111 11111 111111 1 33333333333333 11 111 11111 111 11111 1111111 22222 11 1 1 1111 111 11111111 11 11111 11 22222222222 11 1 11111111 1 111 2222 11111 1111 22 11 2222 11 11 111 111111111 111 11111 22222 1 22 1111 11111111 11111 11 111111 11111 111 1111 1 111111 111111111 11 11 3333333333333333333333333333333 111111 111 1 11 11111111111 2222222222222222 11 1111
lowQualScore : 5 5 1 88 5 11 5 5 0000 3 777 5 22222 0 999999 0 0 44444444444444 33 111 0 22222 5 5 5 777 888 333 5 5 5 999 66666 8888888 11111 11 0 5 5 5 1 5 0 66 5 5 5 5 5 3 0 4 4 7777 4 66 66 4 3333 1 000 4 11111111 55 4 777 66 11111 44 9999 66 00000000000 66 222 5 5 0 88 5 5 0 5 88888888 0 222 4 66 4 4 9999 3333 66 4 4 4 2 11111 4 2 4444 777 00 77 6666 9999 777 11 4 22 4 333 4 666666666 55 8 88 2 000 00000 4 55 55555 4 66 4 4 4 66 8 5 22 1 3333 4 4 2 999 33 9 4 8 6 4 0 4 55 7 4 33333333 99 4 4 0 55 11111 11 999999 55 5 66 999 22222 1 333 3 0000 88888 6 0 3 3 3 3 6 44 777777 99 333333333 33 44 3 3 3 3 3 44 6 11 3 3 6 3 1111111111111111111111111111111 3 333333 3 000 3 3 6666 3 3 77777 5 3 44 44 3 77 44 555 44444444444 3 6 3 2 3 3 8888888888888888 3 44 3 999999 3 11 3 7 9999 55 4
lowQualScore : . . . .. . .. . . .... . ... . ..... . ...... . . .............. .. ... . ..... . . . ... ... ... . . . ... ..... ....... ..... .. . . . . . . . .. . . . . . . . . . .... . .. .. . .... . ... . ........ .. . ... .. ..... .. .... .. ........... .. ... . . . .. . . . . ........ . ... . .. . . .... .... .. . . . . ..... . . .... ... .. .. .... .... ... .. . .. . ... . ......... .. . .. . ... ..... . .. ..... . .. . . . .. . . .. . .... . . . ... .. . . . . . . . .. . . ........ .. . . . .. ..... .. ...... .. . .. ... ..... . ... . .... ..... . . . . . . . .. ...... .. ......... .. .. . . . . . .. . .. . . . . ............................... . ...... . ... . . .... . . ..... . . .. .. . .. .. ... ........... . . . . . . ................ . .. . ...... . .. . . .... .. .
lowQualScore : 7 7 4 22 0 99 0 0 6666 2 111 0 55555 2 444444 8 4 11111111111111 88 222 4 55555 0 0 0 666 888 888 0 0 0 111 22222 0000000 22222 99 0 0 0 0 9 0 5 99 0 0 0 1 0 2 4 4 4 0000 4 11 11 4 9999 1 777 4 44444444 00 4 888 11 11111 33 4444 99 11111111111 99 666 0 0 2 88 0 0 0 0 11111111 0 444 4 11 4 4 7777 6666 11 4 4 4 7 11111 4 7 2222 888 11 99 7777 4444 888 11 4 22 4 222 4 777777777 11 9 11 9 555 00000 0 44 22222 4 11 4 4 4 11 9 8 77 9 9999 4 4 0 999 99 7 6 9 7 0 8 0 55 3 0 77777777 55 0 0 8 00 66666 00 555555 55 7 44 444 77777 4 666 3 4444 33333 7 0 3 3 3 3 7 66 555555 22 333333333 88 66 3 3 3 3 3 66 7 22 3 3 7 3 8888888888888888888888888888888 3 666666 3 444 3 1 5555 1 1 77777 9 1 22 66 1 33 22 444 66666666666 1 2 1 8 1 1 8888888888888888 1 22 1 666666 3 22 6 3 1111 55 0
consensus : TGCA-AG-TA-CTAGTTATT-GAA-G--TAAG-T-TACAC----AATA-A-CAGA-AA-----GAAAGATGTCCA------AGTNGATAC---T--AA---TT-AAAT--ATATTTTTAT-----CAT-A-TTGT-TTA-A---TTTTC---AT-AT-TT-C--GGTA---A-GAT-----ATTTTTTT-T--AAA--GTC-T-GG-CCT-ATGC-AAG--GTT-A-T-GACGA-AAAATAGAG-CCC-TTATT--A-TGAG-CATATGA--TACATG--A-AGTCC----ACAATATNT-TG-TA---GG--GTCT--G-CA---CATT--T-----CTAN-GA----CCCCCCCCC--C---CC------GTG--TGAATG-A-CGAT--ACT-GT-CC-TA-TA--------TCCATA-TT-T-CT-ATTT--TTTA-AC-ATA---ATA-G--CA--G-TTGTCAT-CAAATT-CCAGGAATCCT-----TTA-TAAGTACT--TAAAAAGC---TTTTCAATCCGGTACCG----TA----C---ATCAG-ATCCGC-A--TT-CTCTCGTAA-TGGTGGTG-GT-----G-G-GGGTTGGG-GGTACCCTTTATCCTTCACAC--CCGTCCTTA-----AA-ATAGG-NA-CTTAATGC-TT--CTAT-CA-TT-T--TCA-CTCACCAGAATCTCTTGCAAA----T-GTA-AATTTA-TAATTAACNAAACACATTT-ATCCCG-TGAAAT-GA--A-AAAA-GG------C-GT--AA-ATT-AGCGTTTTGATN-CTGA-T-GTTTA--CATTAGTA---C--CTGC-NTGGTTT--CC-CCCG--TTTTTTT-CGC----C---T-ACT-CAG-GAGT-AG-A-TG-GCGACC-AGGACA--TC------TTAAAT--GTT---------CACCG--TAAA--CCAAG-ATGA-TG-A-C-A--CA-C--AA-ACACGAAAA-AA-TAGTTA-TG-------------------ATTG--------TT-TC-----TTTTAATCC-AAAT---AA-GTGAT-T----T-CA-T-----AGTCTTACTG-C--TATGGCTG-A--G--AAAGGC---GT-----------CC-TT-GTCTC-CAGG-A-G---T-CATTC----CAAC-CG--GA-A------GT-GA--GGTCG-CG-CGAGA---AC--TGTGT-AGCCCTA
Reference ( family-675 ) : TGCA-AG-TA-CTAGTTATT-GAA-G--TAAG-T-TACAC----AATA-A-CAGA-AA-----GAAAGATGTCCA------AGTNGATAC---T--AA---TT-AAAT--ATATTTTTAT-----CAT-A-TTGT-TTA-A---TTTTC---AT-AT-TT-C--GGTA---A-GAT-----ATTTTTTT-T--AAA--GTC-T-GG-CCT-ATGC-AAG--GTT-A-T-GACGA-AAAATAGAG-CCC-TTATT--A-TGAG-CATATGA--TACATG--A-AGTCC----ACAATATNT-TG-TA---GG--GTCT--G-CA---CATT--T-----CTAN-GA----CCCCCCCCC--C---CC------GTG--TGAATG-A-CGAT--ACT-GT-CC-TA-TA--------TCCATA-TT-T-CT-ATTT--TTTA-AC-ATA---ATA-G--CA--G-TTGTCAT-CAAATT-CCAGGAATCCT-----TTA-TAAGTACT--TAAAAAGC---TTTTCAATCCGGTACCG----TA----C---ATCAG-ATCCGC-A--TT-CTCTCGTAA-TGGTGGTG-GT-----G-G-GGGTTGGG-GGTACCCTTTATCCTTCACAC--CCGTCCTTA-----AA-ATAGG-NA-CTTAATGC-TT--CTAT-CA-TT-T--TCA-CTCACCAGAATCTCTTGCAAA----T-GTA-AATTTA-TAATTAACNAAACACATTT-ATCCCG-TGAAAT-GA--A-AAAA-GG------C-GT--AA-ATT-AGCGTTTTGATN-CTGA-T-GTTTA--CATTAGTA---C--CTGC-NTGGTTT--CC-CCCG--TTTTTTT-CGC----C---T-ACT-CAG-GAGT-AG-A-TG-GCGACC-AGGACA--TC------TTAAAT--GTT---------CACCG--TAAA--CCAAG-ATGA-TG-A-C-A--CA-C--AA-ACACGAAAA-AA-TAGTTA-TG-------------------ATTG--------TT-TC-----TTTTAATCC-AAAT---AA-GTGAT-T----T-CA-T-----AGTCTTACTG-C--TATGGCTG-A--G--AAAGGC---GT-----------CC-TT-GTCTC-CAGG-A-G---T-CATTC----CAAC-CG--GA-A------GT-GA--GGTCG-CG-CGAGA---AC--TGTGT-AGCCCTA
gi|1 : TGCACAG-TA-CTAGTTATT-GAA-G--TAAG-T-TACAC----AATA----AGA-AG-----TGAAGATGT-CA------AGT-GAT-C---TAAAA---TTAAAAG--ACATTTTAGT-----CAT-A-TTGT-ATA-AGTTTCTTC---AT-ATCTT-C----TAG--A-AAT-----TTTTTTTT-TTAAAA--GTC-T-GGTCCT-AT-----A--GTT-A-T-GACAAGAAAATAGAG-CCCATTGTT--AGTGAG-CATATGAATTACATG--A-AGTCC----ACAATATATCTG-T-----G--GTCT--G-CA---CATT--TTCTCATTGG-AA----CCCCTCCCC--CGA-CTTACAAAGAG--TGATTG-ATTGGTC-ACT-ATACC-TA-TA--------TCCATATTT-T-CTGATTTTATTTA-ACAATAGATATA-GAACAGCG-TTGTCAT-CAGATTCCCAGGAATTCA-----TTG-TATCTACTTGTAAACAGC---TTTTC-ATCC-GTACCGGTACTA----C---AT--GCATCCGCGA--TTCCTCTGGTA---GGTGGTG-GTGTTGGG-G-GGGGGGGG-GGTAACCTTTATCCTCCACACCGCCGTCCTTA-----AA-ATAGG-TA-TT--ATGC-CT--CATT-CATTT-T--TCA-CTCACCCAAATCTC--GAAGA----T-GTA-AATTTA-T-ATTAACTAAACACATTT-AT-CCG-TGAAAT-GA--A-GAAATGG------CGGT--AA-TCT-AGCG-TTTGATT-CTGATT-GTTTA--CATTAGTA---CCACTAT-TT--TTA--CCACTCG--TTTTTTG-CAG----CATAT-ACTACAGAGAGC-A--A-TG-GCTACC-AGGACAATCC------TTAAA---GTC---------TACTGGCTAAATTCCAAGTATGA-GC-A-T-A--C--C--AACACACGAAAA-AA-TAGTCC-TGGATAGACGGGCATACAGCAATTA--------TTGTC-----TTTTAACCA-AAAT---AATGTGAT-T----TCCA-T-----AGTCCTACTA-CATCATGGCTG-ACTG---AAGGC---GT-----------CC-TT-GTCTTGCAGG-A-GCTCC-CA-TC----AAACACGCTGACATGATACGT-GA--GGATG--G-CGAGAAGCAC--TGTTT-AGCC
gi|10 : aaaattattgttgttgcaagaacataatcatagcattatgataaggtgcgaaactgccagcaaatctgttgatatggataataatctcccttaaattcactatcagatacatgtatattgaatgaggaagaaataatattcctgtatcctatattcaattaataatttcaactaacgaattttttttcacttcatcaacaaactgtcctagagtgagtatcctctgaatttctgacataatcaagagggctacttgatggatcaagatcacctatttaaactaaaaagaaactgagctcaataggatcacgcagaaaatctggacgagtagaaaagtgacgacttgtaccatgggaatacgttacctttcaaattctttgaatatctgtatttaaaagctggttgttttattgatttatatctaaatacatgtatggaattacgtgggagatgtactgagaagacgtactcaattcattccaacctaatgagttacatgaaaggtggtattaggttttgatgaataataataattatttgttgaattaattacagtaccatagagatcacactctgtctccacccctagtttggaatatgaactaagctcacctgactaccaatattctaaatgaagacgtggaaaaaaccataattggaatgcccccttgggcattgacctacacctgcagtcgaataaacgctgatatttattcataatagtcacatagactcattattaggttcatgctttggccattcttgacatggaaataaaTGCA-AG-TAACTGGTTATT-GAA-G--TA-G-T-TACAC----A-TA-A-CAGA-AA-----AAGAAGTGTCCAG-----AGTGGACAC---T--AAAAATT-AAAT--AT---TTTAT-----CAT-A-TTGT-TAG-A---TTTTCCCTAT--T-TT-CAGGGTA---ATGAT-----ATTTTTA-----AAA--GTA-T-GG-CCT-ATGC-AAG--GTT-A-T-GACGA-AAAATAGAG--TC-TTATT--A-TGAG-CATATGA--T-CTTG--A-AGTCC----ACAATATTC-TG-TA---AG--GCTC--G-CA---CATT--T-----CTAT-GA----ACCCCC
gi|11 : aaaagaatcatctcaaaatctggagagaaaaaaaggagttgttgtaacatgggacatctagctatttgatatagtgttttttgatatctaatacatgtatgatgtggattgaactacaaattccatcaaattaacttcatggaaatggtactagtaaataaatactattgatgtgaaattaattagcatgataaatctgtcatatagaaatcttgccctaattctaaaactgaaacccccattgggccaattgacaccaaccagctaaaaagattattttttccataattgtaactaacatgctcttgcacttctgacatggaaAAGGC---TTTTCA-TCCGAT-CCG----TA----CTACATCAG-ATCCGC-A--TT-CTCTCG-GA-TG-TGGTT-GT-----G------TTGG----TACC--TTATCCCT-ACAA--CCGTCCT-A-----AA-AT--G-TA-CT--ATGC-TT--CTAT-CA-TT-T--TCA-CTCACCA-AGTCTCT-GCAAA----T-GCC-AATT-A-TA-TTAACTAAACACATTTTATCC-G-TGAAATTGA--A-GAAA-GG------C-GT--AA-AT---ACGTTT-GATTTCTGA-TTGTTTA--CATC--TAT--C--CTGC-ATGACTT--------G--TTTTTTTTCGC----C---T-ACT-CAG--AGT-AA-G-TG--CGACC-AG-ACA--TCAT----TTAAAT--ATT---------CACCGGTTAAA--CCAAG-ATGA-TG-A-CCA--CAGC--AA-ACACGAAAAAAA-TAGTTA-TG-------------------ATTG--------TT-TC-----TTTTAATCC--AAT---AA-TTGAT-T----T-CA-T-----AGTTCTACTA-C--TATGGCTG-A--GGAAAAGGC---GT-----------CC-TT-GTCTC-CAGG-A-G---C-CATC-------AC-CG--GA-A------GT-GA--GGTCG-CG-CGAG----AC--TGTGT-AGCCCTAg
gi|12 : TATCCTTCACAC--CCGTCCTTACTAAGAATATAGA-AA-CT-AATGC-TT--CCAT-CA-TT-TGTCCA-CTCACC-GAATCTCTGCCAAA----T-TTA----TTA-TAAATAACGAA-TACATTT-ATCC-G-T-AAAT-GA--G-AAAA-GGAAAAAGC-GTTTAATATTTAGCGTTTTTGTA-TTGA-T-TGTTA--CATTAGTA---C--CTGC-ATGG-TT--CT-TCCGTTTTTTTTT-CGC----C---C-TTT-CA--GAGT-AG-A-TG-GGGAC-----GCA--TC------TT-AAT--G-T---------CACCG--T--A--C--AG-ATGATTG-A-C-A--CACC--AA-ACACGAAAA-AA-TA--TA-TG-------------------TATG--------GT-TC------GTTAATCG-AAATAA-AA-GTGAT-T----T-CA-TTATAGGGTC-TACTG-C--TAT--TTA-A--G--AAAGGCCCAGT-----------CC-TT-GTCTC-CAGGAA-G---T-CCGTA----C-AC-CG--GA-A------GTAGAG-GGTCGCCG-CGt
gi|14 : aggtggagcttaccggnnnnnnnnnnnnnnnnnnnnnnnnnTTC-CGCTATTC---T-ACTTCAG-G-GTGAG-A-TG-GCGACC-AGAGCA--TCCCATCTTTAATT--GTTCGACCCCCGCACCGATTAAA--CCAAG-TGGA-TG-A-C-ATTTA-CCTAA-AC---AGAA-AA-TAGTT--TGT------------------ATTGTAGTTATATC-TCTGATTTTTTAATCCTAGATAAAAA-GTGATATTATAT-CACT-----AGTC-TACTA-C--TAATGCTG-A--G--AAAGGC---GCTTACGGACCCACT-TT-GT-TC-CAGG-ACG---T--ATCCCCATCAAC-CG--GA-
gi|15 : aaccctcattatataaG-CCC-TTATT--A-TGAA-CATATGA--TACATG--A-AGTCC----ACAATATTT-TG-TA---GG---TCT--G-CA---CATT--T-----CTAC-GA----CCCCCCCCCTCC---CC------GTG--TTGATG-A-CGATTTACT-GT-CC-TA-TA--------TCCATA-TT-TTCT-ATTT--TTTA-AC-AT----ATAGG--CA--G-TTGTCAT-CAAATT-CCAGAAATCCT-----TTA-TAAATACT--T-AAAAGC---TTGTC-ATCC-GTACCG----TA----C---ATCAG-ATCTGC-A--TT-CTCTCGT-A-TGGTGGTG-GT-----G-G-GGGTTGGG-GGTG-CCTTTATCCTTCACA---CCGTCCTTA-----AA-ATAGtaaaacaaagtcgagggtgaggagactcgacgcgccatggagactgttttgtagcc
gi|16 : CCG-TGAAAT-AC--ATAAAA-CG------T-GT--AA-ATT-AGCGTTTTGATA-CCGA-T-------------------C--CTAC-ATTGCTT--TC-CCCG---TTTTTT-CGC----C---A-ACT-CGG-GAGT-AG-A-TG-AGTACC-TGGACA--TC------TTACAT--GTT---------CGCCG--TAAA--CCAAG-ATGA-TG-A-T-A--CG-C--AG-ACACGACAA-AA-TAGCTA-TG-------------------ATTA--------TT-TC-----TTTTAACCC-AAAT---AA-GTAAA-T----T-CA-C-----TGT-TTGTTG-C--TAT-GTTG-A--G--AAA--------------------------TATG-CAAA-A-G---T-T-CTC----C-AC-CG--GA-A------GC-GA--G
gi|17 : -AAAA-CG------T-GT--AA-ATT-GGCGTTTTGATA-CTG------------ATTA---------------TG----------------TTTTTT-CAT----C---C-ACC-CAG-GAGT-AA-A-TT-GGTACC-TGGACA--TC------TTAGAT--ATT---------CACCG--TAAA--CCAAG-ATGA-TG-A-T-A--CA-C--AA-ACACGAAAA-AA-TAGTTA------------------------------------------------AATCC-AAAC---AA-GTGAA-T----C-CA-T-----AGT-TTGTTG-C--TATG-CTG-A--G--TAATGT---GC-----------CC-TT-GTCTC-CAGG-A-G---T-C-TTC----C-AC-CG--GA-A------GT-GA--GATCG-CG-CGAGA---A---TGTGT-AGCCCTAactgtagctctattg
gi|18 : TTTTTT-CGC----C---T-ACT-CAG-GAGT-AT-A--A-GCGACC-AGGACA--TC------TTAAAT--GTT---------CACCG--TAAA--CCAAG-ATGA-TG-A-T-A--CA-C--AA-ACACG-AAA-AA-TAGTTA-TG-------------------ATTG--------TT-TC-----TTTTAATCC-AAAT---AA-GTGAT-T----T-CA-T-----AGTC-TACTA-C--TAT-GCTA-A--G--AAAGGC---GT-----------CC-TT-GTCTC-CAGG-A-G---T-C-CTC----C-AC-CG--GA-A------GT-GA--GGTCG-CG-CGAG----AC--TGTGT-AGCCCTt
gi|2 : ctcgTGCA-AG-TAACTAGTTTAT-GAA-G--TAAG-T-TA-AC----AATA-A-CAGA-AA-----AAA---TGTCCA------AGT-GATATAAAT--AA---TT-AAAT--AT---TTTGT-----CATTG-CTATGTTA-A---TTTTCT--AT-AT-TT-C--AGCA---A-GA------ATTTTTTT-T--AAAAAGTC-T-GG-CTTCGTGC-AAGTGGCTCA-G-AACGA-AAGA--GTG-CCA-TGATTCAA-TGAG-CATATGA--TACATGTTATAGTCT----ACACTATC---G-TA---GG---TC-----CA---CATG--T-----CTAGTGA----CCCCTCCCC--C---CC------ATG--TTGATG-A-CATC--ACT-GC-CTATA-TA--------TCCATA-AT-T-CT-ATTT--TT-A-AC-ATA---ATAAG--CA--GATTGCAAT-CAAATT-CCAGGAATCCT-----TTACTAAGTACT----AAAACC---TTTTCA-TCCG-TACCG----TAGCTAC---ATCA--ATCCGC-A--TT-CTCTGGTAAGTGGTGGTGTGT-----T-G-GGG--GGG-GGTACC-TTTATCTACCAC-----CGTCCTTA-----AA--TAGG-TA---TA------T--CTCT-CA-TT-C--TCA-CTCACCA-AGTCTC--GCAAAA---T-GTA-AATT-A-TACTTAAC-AAACA-ATTT-ATCCCG-TGAAAT-GAAGA-AAAA-GG--------GT--AA-A-T-AGCGTTTTGATT-CTGA-T-ATTTA--CATTA-TA---C--CTGCATTGAGTT--AC-CTCG-----TTGT-CGCG---C---T-ACG-CCA-GAGT-AGAA-TG-CTGACC-AGGACA--TC------TTAAAT--GTT---------CACTG--TAAA--CC-AG-AT-A-T--A-C-A--CA-C--AA-ACACGAAAA-AA-TAGTTA--G-------------------AT----------TT-TC------TTTAATCT-AAAT---AA-GTGCT-T----T-CA-T-----AGTC-TA-TA-C--TAT--CTGAA--A--AAAGGC---TC-----------CC-TT-GTCTC-CA-G-A-T---C-CATCA----CA---CG-----A------AT-GAT-CGTCG-CG-CGAG----ACTTTGTGT-AG
gi|20 : atatcattgcattatagtagaataacccatgaataatttgtataaatattatatatcaatataagaataaataccccctgtattccttcaattttaaaaattcaaaaacatattttcttatatcaacaatagtctagagtaagactcctgaattatgattcaagttcgaatgttgatgatcagcgaacctttaaatgaaagacatcacttcaaaatctggaaaaaaggatttgttagcatgggatttagcattggataatctttttgattgataaatatatagatgttattaatgatgaagattctaagtataaatctcaaaaatatgaagggtatagtaaaaaaatactattatgtaatataatgtatgcgaaattaatatgtcgttatattagataatcttgcctacattcttaaaatggacataaacccctggcattgacaccactcagtcaaaatagattattgtatcatcatattgcatacataagactcgatgtatggctcctgcttatctctagatgcattgctgacatgaaaaGAT-T----T-CA-T-----AGTCT-ACTG-C--TATG-CTA-A--G--AAAGGC---GT-----------CC-TT-GTCTC-CAGG-A-G---T--ATTC----C-AC-CT--GA-A------GT-GA--GGTCG-CG-CGAG----AC--TGTGT-AGCCCTA
gi|21 : -T-CT-ATTT--TTTA-AC-ATA---ATATA--CA--G-TTGTCAT-CAAATT-CTAGGAATCCT-----TTA-TAAGTACT--TAAA
gi|3 : TGCA-AG-TA-CTAGTTATT-GA--G--TAAG-TGTACAC----A-TACA-C-----------GAAAGATGTCCA------AGTGGATTC------AA------AAATTAATATTTT-GT-----CAT-A-TTGT-T-A-A---TTTTC---AT-AT-TCAT--GGCA---A-GA------ATTTTTTT-T--AAAA-GTC-T-GG-CCT-ATGC-CAG--GTC-ATT-GACG--AAAATAG----CC-ATA-T--A-TGAG-C-TATGA--TACATG--A-AGTCCA---ACAATATTC-TG-TA----G--GTCT--G--A----ATT--T-----CTAT-GA-----CCCCCCCC--C---CA------GTG--T---TGTG-CAAT--TCA-AT-CTATA-TA--------TCCATATTT-T-CT-A-TT--TTTA-AC-ATA---ATA-G--CA--G--TGTCAT-CAAATT-CCAG--ATCCA-----TT--TAACTATT--TAAAAAGC---TTTTC-ATCC-GTACCGTAC-TA----C---ATCAG---CCGC-A--T---TCTTGT-A-TGGTGGTG-GT-----GTG-GGGGGGGG-GGT---CTTTATCC-ACACAC--CCGTTCCTT-----AA-ATAGGTTA-C-TATTGCTTT--CTATCCA-TT-T--TCACCTCACCA-AGTCGC-TGC--A----TGGTAGAAATTA-TATTTAATAAACCACATTT-AT-CCG-TGAAAT-GA--AGAAAA-AG------C-GT--AA-ATT-AG-GTTTTGATC-CTGA-T-G-TTA--CATTAG-A---C--CTGC-ATTGTTTGACA-CTCG---TGTTTG-CGC----T---A-ACT-CAG-GAGT-AG-ATTG-GCGACA-GAGACA--TC------TTAAAT--GTT---------CCCTG--TAA----CAAG-AT-A-TGCA-C-A--CA-G--AC-ACACGAAAA-AATTAGTTA-TG-------------------A-TG--------TT-TC-----TTTTAATCA-CAAT---AA-GTCTT-A----T-CA-T-----AGTC-TACTACC--TATG--TG-AC-G--AAAGGC---GT-----------CC-TT-GTCTC-CAGG-T-G-----CAT------CA---CG--GA-A------GT-GA--GGTCG-CG-CG-GG---AC--TGTGT-AGCCTTAgc
gi|4 : attgaagatatccctgtattccttcaatttaataaattcaacatattttttttatcaacaaatgtcttcagagtagatcttgaatttgatcaatttgaagtttgatggaatcaagaaccgtttaaattaaagacatcattcaaatctggagaaaaaaggagtttgtcacaggatcatagctatttgatatcgtttattgattatctaaataccatgtatgtgtgatgtctaatagactatataagtctcatcaaatctactcatgataaggtatagttaaaaaaatactagtattgtgaattaatgagcctaataatctgtcactatagaaacttgccctaattctaatgacagaaccccattgcggcagtgacacccactagtcaaagattatttattgcatttggtaactagatcatttaggtcatgcgaatttgcattctgacatggaaaaTT-GAACGCCTAAG-T-TACACTCTCAATA-AACAGA-AAAAGAAGAAATATGTCCACTAAAAAGTAGATAC---T--AA---A--AAATTAATATCTTTATAACAACAT-AATTGT-TTTTA---TTTTC---ATCAT-TT-C--AGGAGCGA-GATTAATTGTTTTTTTCT--AAA--GCC-TTGG-CCT-ATGCGAAG--GTC-A-TTGGCGA-AAA-TAGAGTCCC-TTATT----TGAGGCATATGA--TACATG--A-AGTTCTCCTACAATATTT-TGGTATTTGG--GTCTTTGTCAGTTTATTGTT-----CTCA-GATCCGCCCCCTCCC--C---CCA-----GTG--TGAGTG-A-CGATTCACTTGT-CC-TA-TACATGTATATCCATA-TTGT-CT-ATTT--TTTA-AC-ATA---ATAAG--CA--G-TTGTCAT-CAAATT-CCAGGAATCCTTTAAATTA-TAAATACT--T-AAAAGC---TTTTC-ATCC-GTACCG----TA----C---ATCAG-ATCCGC-A--TT-CTCTCGT-A-TGGTGGTG-GT-----------GTT-GG-GGTA-CCTTCATCCTTCACA---CCGTCCTTA-----AA-ATAGG-AA-CT--ATGC-TT--CTAT-CA-TT-T--TCA-CTCACCA-AATTTC-TAC-AA----T-GGA-AA-TTA-T-ATTAACTAA--ACATTT-AT-CCG-TGAAAT-GG--A-t
gi|5 : tatacgaagaataatctcctgtattccttcatcaaattcaaaatatttttttatatcaacaaatagtctagatcgagtagattctctgaatttctgatacaagtttgatggaatcaagaactttaaataaagacattcagttcaaaaaatctcggagtgatgtgaaagtttttaccaaaagggagttttgtacaattgggatctttagctagttaatgtgatatcctgttttgtactgattatctaacatacatgtatgatgtatgtctgtatgaatacttaaacctcctcatcaaatctaacttcataaatgggaaaatgggtataggctttaataacataactattaattgccgtgagcttaagttaatgtagccatgataattcgtcatatagaaaaatcttgccctaatttcttaaatgactgaaacccccattgggcgaatttaaatgagacccactcagttcaaaaagatatctgtttttcagtaattatgttaactaggaattcattctaggcttcatgcttgtgcgctatttctgtcaatgcgccaaaaatgcccatataggttctattacacTGCA-AGGTA-CTAGTTATTTGAA-GC-TAAGCT-TACAC----AATA-A-CAGATAA-----AGAAGA-GTCCA------A-TTGATAC---T--AAAA-TT-AAAT--AT----TTAT-----CAT-A-TTGT-T-A-A---TTTTC---AT-AT-T--C--AGTA---A-GAT------TTTTTTT-T--AAA--GTC-T-GG-CCT-AGCC-AAG--GTT-A-T-GACGA-AAA-TA-AG-CCC-TTATC--A-TGAG-CATACGA--TACAGG--A-AGTCC----ACAATATC---G-TA---CGCCGTCT--G-CA---CATT--T-----CTAT-GA----CCCCCCCCC--CTTTCC------AGGGTTGATTC-A-C------------CC-TAATA--------TACAT--TT-C-CT-ATTT--TAAACAC-ATA---ATA-AGCCA--T-TCGTCATTCAGATT-C-AGAAATCAT-----TTA-GAAGTACT---GAAAAGCCCTTTTTCA-TCC--TACCGATACTA----C---ATCAG-ATCCGC-A--TT-CTCTCGTGG-TGGTGGT--GT-----G-GTGGGCGGGA-GGTACCTTATATCCTTCACAC--CGGCCTTAA-----AA-ATAGG-TA-CT--ATGC-TTTCTTAT-CA-TTGT--TCACCTCACCAAGATCTC-TACAAAATGCT-ATA-AATT---TAATTAAT--AACACATTTCATCACGCTGAAAT-GA--A-GAAA-GG------C-GTA-AA-ATT-AGCG-TTTGATT-CTGATT-GCTTA--CATTAGTA---C--CTGC-AT-GTTT--AC-CTCG--TTTTTTT-CGC----C---CAACT-CA--GAG--AG-A-TGTGCGACC-AGGACA--TCT-----TTAAAT--GTT---------CACCG--TAAA--CCAA--ATGA-TG-ACC-A--TA-C--AA-ACACGAAAA-AATTAGTTAGTG-------------------TTTG--------CT-TC-------TGAATCC-AAAT---AA-GTGAT-T----T-CA-T-----AGTC-TACTA-C--TATGCCTG-A--G--AAAGG----GT-----------CCATT-G-CTC-CAGG-A-G---TCCAATC------AC-CG--CA-A-------T-GAGGGGTCG-CG-CGCAA---AC--TGTGTCAGCCCgcattgaaaatttgtatttaatttcattg
gi|6 : tgttttattggatcatcttagaatacatgtatgatgttgctgatgtctgaatgaagtataattcatcaacttaacttcatggaaaggtatagttaaaacaaacttattagtgaattgaatgtagccatgataaagctgctcatatagaaaatctggccctcaattcttaaatgactgaaacccccaacttgggcgaattgacaccactcagtcagaacattttcataattgtctacgctatgactaatttacgctcatgctttgcattccgacatggaaaaaaTGCA-AG-TA-CTAGTTAT--GAA-G--TTAG-T-TACAC----AATA-A-CAGA-AA-----GAAAGATGTTCA------AGTTGATAC---T-------TT-AAAT--ATATTTTTAT-----CAT-A-TTGT-TTA-A---ATTTC---AT-AT-TT-C--GGTA---T-GAT-----ATTTTTT------AA--GTCCT-GG-CCT-AT-C-ATG--GTT-A-T-G-CGA-AAAATGGAG-CCC-TTATT--A-TGAA-CATATGA--TACATG--A-AGTCC----A-AATATGT-TG-TA---GA--GTCTT-G-CA---CATT--T-----CTAAAGA----CCCCCCCTC--C---CC------GTG--TGAATG-A-CGAT--ACT-GT-CC-TA-TA--------TCCATA-TT---CT-ATTT--TTTA-AC-ATA----TG-G--CA--G-TTGTCAT-CAAATT-CCAGAAATCCT-----TTA-TAAATACT--TAAGAAGC---TTGTCAATCCGGTACCG----TA----C---ATCA--ATCTGC-AATCT-CTCTCGTAA-TGGTGGTG-GT-----G-G-GGGTTGGGTGGTGCCCTTTATCCTTCACAC--CCGTCCTTA-----AA-ATAGG-AAACTTAACGC-TT--CTAT-CA-TT-T--TCA-CTCACCAGAATCTCTTGCAAA----T-GTA-AATTTAATAATTAACGAAACACAATT-ATCCCG-TCAA-T-GA--A-AAAA-GG------C-GT--AA-ATT-AGCGTTTTGATG-CTGA-T-GTTTAAGCATTAGTAAAGC--CT-C-TTGGTTT--CC-CCCG--TTTTTTT-CGC----C---T-ACT-CAGTGAGT-AG-A-TG-GCGACCCAGGACA--TC------TTAAATTTGTT---------AACCG--TAAA--CCAAG-ATGA-TG-A-C-A--CA-CT-AA-ACACGAAAA-AA-T-GTTA-TG-------------------ATTG--------TT-TC-----TTTTAATCC-AAAT---AC-GTGAT-T----T-CA-T-----AGTCTTACTG-C--TATGGCTA-A--G--AAAGGC---GT-----------CC-TTGGTCTC-CA-G-A-G---T-TATTC----CAAC-CG--GA-A------GT-GA--GGTCG-CGCCGAGA---AC--TGTGT-AGCCCTA
gi|7 : TGCA-AG-TA-CTAGTTAT--GAA-G--TTAG-T-TACAC----AATA-A-CAGA-AA-----GAAAGATGTTCA------AGTTGATAC---T-------TT-AAAT--ATATTTTTAT-----CAT-A-TTGT-TTA-A---ATTTC---AT-AT-TT-C--GGTA---T-GAT-----ATTTTTT------AA--GTCCT-GG-CCT-AT-C-ATG--GTT-A-T-G-CGA-AAAATGGAG-CCC-TTATT--A-TGAA-CATATGA--TACATG--A-AGTCC----A-AATATGT-TG-TA---GA--GTCTT-G-CA---CATT--T-----CTAAAGA----CCCCCCCTC--C---CC------GTG--TGAATG-A-CGAT--ACT-GT-CC-TA-TA--------TCCATA-TT---CT-ATTT--TTTA-AC-ATA----TG-G--CA--G-TTGTCAT-CAAATT-CCAGAAATCCT-----TTA-TAAATACT--TAAGAAGC---TTGTCAATCCGGTACCG----TA----C---ATCA--ATCTGC-AATCT-CTCTCGTAA-TGGTGGTG-GT-----G-G-GGGTTGGGTGGTGCCCTTTATCCTTCACAC--CCGTCCTTA-----AA-ATAGG-AAACTTAACGC-TT--CTAT-CA-TT-T--TCA-CTCACCAGAATCTCTTGCAAA----T-GTA-AATTTAATAATTAACGAAACACAATT-ATCCCG-TCAA-T-GA--A-AAAA-GG------C-GT--AA-ATT-AGCGTTTTGATG-CTGA-T-GTTTAAGCATTAGTAAAGC--CT-C-TTGGTTT--CC-CCCG--TTTTTTT-CGC----C---T-ACT-CAGTGAGT-AG-A-TG-GCGACCCAGGACA--TC------TTAAATTTGTT---------AACCG--TAAA--CCAAG-ATGA-TG-A-C-A--CA-CT-AA-ACACGAAAA-AA-T-GTTA-TG-------------------ATTG--------TT-TC-----TTTTAATCC-AAAT---AC-GTGAT-T----T-CA-T-----AGTCTTACTG-C--TATGGCTA-A--G--AAAGGC---GT-----------CC-TTGGTCTC-CA-G-A-G---T-TATTC----CAAC-CG--GA-A------GT-GA--GGTCG-CGCCGAGA---AC--TGTGT-AGCCCTA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATACAACAGACTCGAAATGCTGATCAATATCTATCATAATCTGGAAAGAAATATAAATTAGATATATGTATAGTATTATCTATCAATAATTTAGTATGAAAAAGAAATTGAGACACGGCAATTGAAACTTGTATTTTATTTTACATTAACTTGATCTGGATCTTATAACATGAGATACTGATAACAATGTTTTTTCCGACCTAAAAATATTTAGTGCGTGTTTCAAAATTAACAGATTTGAAGAAGAAAAGCAGTATTCCTATCTGTCCTGGTATGTTACAGGAATTCAATTTAATCCAGTGTCACTTTTCAACAATCCAAAACAACCATCACAGCAGTTTGAGCCTCAGTTATCTTGGGGGGAAAACCTCCTGCAATTTAAAAAAATAAAATTATTGTTGTGCACGAAATAATTCTTTGCATATGTAAGTGGAACTGCAATAATTGCATAGATATGTATCTATACTGAAGAATAATCTCTTGTATTTCCTTCCAATTTTGAAATAAATTCAAACATATTTTTTTTTATAATCAACAAATAGTCCTAGAAGTAGAGTCTCTGAATTTTGATAACCAAAGTTTGGATGGATCAAAGAAACTTTAAATAAGACATCAAATTCACAATCTGGAAGAAAGGATGTTTGACATGATCTAGCTAATTTGATATCTGTTTTATTGATGTCTAAATACATGTATGAATGAATATTAAATTCATGCAAATTATTTTCAATGGAAAGGGTATAGTAAAAAGAATACTATTATGTATTG
Unaligned ( gi|9 ): ATACAACAGACTCGAAATGCTGATCAATATCTATCATAATCTGGAAAGAAATATAAATTAGATATATGTATAGTATTATCTATCAATAATTTAGTATGAAAAAGAAATTGAGACACGGCAATTGAAACTTGTATTTTATTTTACATTAACTTGATCTGGATCTTATAACATGAGATACTGATAACAATGTTTTTTCCGACCTAAAAATATTTAGTGCGTGTTTCAAAATTAACAGATTTGAAGAAGAAAAGCAGTATTCCTATCTGTCCTGGTATGTTACAGGAATTCAATTTAATCCAGTGTCACTTTTCAACAATCCAAAACAACCATCACAGCAGTTTGAGCCTCAGTTATCTTGGGGGGAAAACCTCCTGCAATTTAAAAAAATAAAATTATTGTTGTGCACGAAATAATTCTTTGCATATGTAAGTGGAACTGCAATAATTGCATAGATATGTATCTATACTGAAGAATAATCTCTTGTATTTCCTTCCAATTTTGAAATAAATTCAAACATATTTTTTTTTATAATCAACAAATAGTCCTAGAAGTAGAGTCTCTGAATTTTGATAACCAAAGTTTGGATGGATCAAAGAAACTTTAAATAAGACATCAAATTCACAATCTGGAAGAAAGGATGTTTGACATGATCTAGCTAATTTGATATCTGTTTTATTGATGTCTAAATACATGTATGAATGAATATTAAATTCATGCAAATTATTTTCAATGGAAAGGGTATAGTAAAAAGAATACTATTATGTATTG
Unaligned ( gi|13 ): TCGTTGCATCATGTAAGTGTGAAACTGAAGAAAATTGTATAGAATAGTTATGATCTAGTATGAAGAATAATCAAACTGTATTCCTTTCAATTTTAAACATATTTTTTATATTTATCAAAGCAAATATAGTCTAGAAGATCTCTGAATTCTGATACAAGTTTGATGGATCAAGAACCTTTAAATAAGACACTCAGTCAAAATCTGGAGGGAAAAGAAAGACGATATTTTACAGTGGGGATCTAGCTCTGAGTGTGGATATCTGTTTTATTGTTAATCTAAATACATGTATGATGGGATGAATATGTAAATTCATCAAATTAACTTCATGGAA
Unaligned ( gi|19 ): TATATGAAAATAATCTGCCTGTATTCCTTCAATTTTAATATTCAAAATACTTTTATCATCAAAACAATAGTCCTAAAAGCGGTTCTCTGAAGTTCTGAATAAAAGTTGAT
Alignments
lowQualScore : 1 11 1111 11111 111111 1 33333333333333 11 111 11111 111 11111 1111111 22222 11 1 1 1111 111 11111111 11 11111 11 22222222222 11 1 11111111 1 111 2222 11111 1111 22 11 2222 11 11 111 111111111 111 11111 22222 1 22 1111 11111111 11111 11 111111 11111 111 1111 1 111111 111111111 11 11 3333333333333333333333333333333 111111 111 1 11 11111111111 2222222222222222 11 1111
lowQualScore : 5 5 1 88 5 11 5 5 0000 3 777 5 22222 0 999999 0 0 44444444444444 33 111 0 22222 5 5 5 777 888 333 5 5 5 999 66666 8888888 11111 11 0 5 5 5 1 5 0 66 5 5 5 5 5 3 0 4 4 7777 4 66 66 4 3333 1 000 4 11111111 55 4 777 66 11111 44 9999 66 00000000000 66 222 5 5 0 88 5 5 0 5 88888888 0 222 4 66 4 4 9999 3333 66 4 4 4 2 11111 4 2 4444 777 00 77 6666 9999 777 11 4 22 4 333 4 666666666 55 8 88 2 000 00000 4 55 55555 4 66 4 4 4 66 8 5 22 1 3333 4 4 2 999 33 9 4 8 6 4 0 4 55 7 4 33333333 99 4 4 0 55 11111 11 999999 55 5 66 999 22222 1 333 3 0000 88888 6 0 3 3 3 3 6 44 777777 99 333333333 33 44 3 3 3 3 3 44 6 11 3 3 6 3 1111111111111111111111111111111 3 333333 3 000 3 3 6666 3 3 77777 5 3 44 44 3 77 44 555 44444444444 3 6 3 2 3 3 8888888888888888 3 44 3 999999 3 11 3 7 9999 55 4
lowQualScore : . . . .. . .. . . .... . ... . ..... . ...... . . .............. .. ... . ..... . . . ... ... ... . . . ... ..... ....... ..... .. . . . . . . . .. . . . . . . . . . .... . .. .. . .... . ... . ........ .. . ... .. ..... .. .... .. ........... .. ... . . . .. . . . . ........ . ... . .. . . .... .... .. . . . . ..... . . .... ... .. .. .... .... ... .. . .. . ... . ......... .. . .. . ... ..... . .. ..... . .. . . . .. . . .. . .... . . . ... .. . . . . . . . .. . . ........ .. . . . .. ..... .. ...... .. . .. ... ..... . ... . .... ..... . . . . . . . .. ...... .. ......... .. .. . . . . . .. . .. . . . . ............................... . ...... . ... . . .... . . ..... . . .. .. . .. .. ... ........... . . . . . . ................ . .. . ...... . .. . . .... .. .
lowQualScore : 7 7 4 22 0 99 0 0 6666 2 111 0 55555 2 444444 8 4 11111111111111 88 222 4 55555 0 0 0 666 888 888 0 0 0 111 22222 0000000 22222 99 0 0 0 0 9 0 5 99 0 0 0 1 0 2 4 4 4 0000 4 11 11 4 9999 1 777 4 44444444 00 4 888 11 11111 33 4444 99 11111111111 99 666 0 0 2 88 0 0 0 0 11111111 0 444 4 11 4 4 7777 6666 11 4 4 4 7 11111 4 7 2222 888 11 99 7777 4444 888 11 4 22 4 222 4 777777777 11 9 11 9 555 00000 0 44 22222 4 11 4 4 4 11 9 8 77 9 9999 4 4 0 999 99 7 6 9 7 0 8 0 55 3 0 77777777 55 0 0 8 00 66666 00 555555 55 7 44 444 77777 4 666 3 4444 33333 7 0 3 3 3 3 7 66 555555 22 333333333 88 66 3 3 3 3 3 66 7 22 3 3 7 3 8888888888888888888888888888888 3 666666 3 444 3 1 5555 1 1 77777 9 1 22 66 1 33 22 444 66666666666 1 2 1 8 1 1 8888888888888888 1 22 1 666666 3 22 6 3 1111 55 0
consensus : TGCA-AG-TA-CTAGTTATT-GAA-G--TAAG-T-TACAC----AATA-A-CAGA-AA-----GAAAGATGTCCA------AGTNGATAC---T--AA---TT-AAAT--ATATTTTTAT-----CAT-A-TTGT-TTA-A---TTTTC---AT-AT-TT-C--GGTA---A-GAT-----ATTTTTTT-T--AAA--GTC-T-GG-CCT-ATGC-AAG--GTT-A-T-GACGA-AAAATAGAG-CCC-TTATT--A-TGAG-CATATGA--TACATG--A-AGTCC----ACAATATNT-TG-TA---GG--GTCT--G-CA---CATT--T-----CTAN-GA----CCCCCCCCC--C---CC------GTG--TGAATG-A-CGAT--ACT-GT-CC-TA-TA--------TCCATA-TT-T-CT-ATTT--TTTA-AC-ATA---ATA-G--CA--G-TTGTCAT-CAAATT-CCAGGAATCCT-----TTA-TAAGTACT--TAAAAAGC---TTTTCAATCCGGTACCG----TA----C---ATCAG-ATCCGC-A--TT-CTCTCGTAA-TGGTGGTG-GT-----G-G-GGGTTGGG-GGTACCCTTTATCCTTCACAC--CCGTCCTTA-----AA-ATAGG-NA-CTTAATGC-TT--CTAT-CA-TT-T--TCA-CTCACCAGAATCTCTTGCAAA----T-GTA-AATTTA-TAATTAACNAAACACATTT-ATCCCG-TGAAAT-GA--A-AAAA-GG------C-GT--AA-ATT-AGCGTTTTGATN-CTGA-T-GTTTA--CATTAGTA---C--CTGC-NTGGTTT--CC-CCCG--TTTTTTT-CGC----C---T-ACT-CAG-GAGT-AG-A-TG-GCGACC-AGGACA--TC------TTAAAT--GTT---------CACCG--TAAA--CCAAG-ATGA-TG-A-C-A--CA-C--AA-ACACGAAAA-AA-TAGTTA-TG-------------------ATTG--------TT-TC-----TTTTAATCC-AAAT---AA-GTGAT-T----T-CA-T-----AGTCTTACTG-C--TATGGCTG-A--G--AAAGGC---GT-----------CC-TT-GTCTC-CAGG-A-G---T-CATTC----CAAC-CG--GA-A------GT-GA--GGTCG-CG-CGAGA---AC--TGTGT-AGCCCTA
Reference ( family-675 ) : TGCA-AG-TA-CTAGTTATT-GAA-G--TAAG-T-TACAC----AATA-A-CAGA-AA-----GAAAGATGTCCA------AGTNGATAC---T--AA---TT-AAAT--ATATTTTTAT-----CAT-A-TTGT-TTA-A---TTTTC---AT-AT-TT-C--GGTA---A-GAT-----ATTTTTTT-T--AAA--GTC-T-GG-CCT-ATGC-AAG--GTT-A-T-GACGA-AAAATAGAG-CCC-TTATT--A-TGAG-CATATGA--TACATG--A-AGTCC----ACAATATNT-TG-TA---GG--GTCT--G-CA---CATT--T-----CTAN-GA----CCCCCCCCC--C---CC------GTG--TGAATG-A-CGAT--ACT-GT-CC-TA-TA--------TCCATA-TT-T-CT-ATTT--TTTA-AC-ATA---ATA-G--CA--G-TTGTCAT-CAAATT-CCAGGAATCCT-----TTA-TAAGTACT--TAAAAAGC---TTTTCAATCCGGTACCG----TA----C---ATCAG-ATCCGC-A--TT-CTCTCGTAA-TGGTGGTG-GT-----G-G-GGGTTGGG-GGTACCCTTTATCCTTCACAC--CCGTCCTTA-----AA-ATAGG-NA-CTTAATGC-TT--CTAT-CA-TT-T--TCA-CTCACCAGAATCTCTTGCAAA----T-GTA-AATTTA-TAATTAACNAAACACATTT-ATCCCG-TGAAAT-GA--A-AAAA-GG------C-GT--AA-ATT-AGCGTTTTGATN-CTGA-T-GTTTA--CATTAGTA---C--CTGC-NTGGTTT--CC-CCCG--TTTTTTT-CGC----C---T-ACT-CAG-GAGT-AG-A-TG-GCGACC-AGGACA--TC------TTAAAT--GTT---------CACCG--TAAA--CCAAG-ATGA-TG-A-C-A--CA-C--AA-ACACGAAAA-AA-TAGTTA-TG-------------------ATTG--------TT-TC-----TTTTAATCC-AAAT---AA-GTGAT-T----T-CA-T-----AGTCTTACTG-C--TATGGCTG-A--G--AAAGGC---GT-----------CC-TT-GTCTC-CAGG-A-G---T-CATTC----CAAC-CG--GA-A------GT-GA--GGTCG-CG-CGAGA---AC--TGTGT-AGCCCTA
gi|1 : TGCACAG-TA-CTAGTTATT-GAA-G--TAAG-T-TACAC----AATA----AGA-AG-----TGAAGATGT-CA------AGT-GAT-C---TAAAA---TTAAAAG--ACATTTTAGT-----CAT-A-TTGT-ATA-AGTTTCTTC---AT-ATCTT-C----TAG--A-AAT-----TTTTTTTT-TTAAAA--GTC-T-GGTCCT-AT-----A--GTT-A-T-GACAAGAAAATAGAG-CCCATTGTT--AGTGAG-CATATGAATTACATG--A-AGTCC----ACAATATATCTG-T-----G--GTCT--G-CA---CATT--TTCTCATTGG-AA----CCCCTCCCC--CGA-CTTACAAAGAG--TGATTG-ATTGGTC-ACT-ATACC-TA-TA--------TCCATATTT-T-CTGATTTTATTTA-ACAATAGATATA-GAACAGCG-TTGTCAT-CAGATTCCCAGGAATTCA-----TTG-TATCTACTTGTAAACAGC---TTTTC-ATCC-GTACCGGTACTA----C---AT--GCATCCGCGA--TTCCTCTGGTA---GGTGGTG-GTGTTGGG-G-GGGGGGGG-GGTAACCTTTATCCTCCACACCGCCGTCCTTA-----AA-ATAGG-TA-TT--ATGC-CT--CATT-CATTT-T--TCA-CTCACCCAAATCTC--GAAGA----T-GTA-AATTTA-T-ATTAACTAAACACATTT-AT-CCG-TGAAAT-GA--A-GAAATGG------CGGT--AA-TCT-AGCG-TTTGATT-CTGATT-GTTTA--CATTAGTA---CCACTAT-TT--TTA--CCACTCG--TTTTTTG-CAG----CATAT-ACTACAGAGAGC-A--A-TG-GCTACC-AGGACAATCC------TTAAA---GTC---------TACTGGCTAAATTCCAAGTATGA-GC-A-T-A--C--C--AACACACGAAAA-AA-TAGTCC-TGGATAGACGGGCATACAGCAATTA--------TTGTC-----TTTTAACCA-AAAT---AATGTGAT-T----TCCA-T-----AGTCCTACTA-CATCATGGCTG-ACTG---AAGGC---GT-----------CC-TT-GTCTTGCAGG-A-GCTCC-CA-TC----AAACACGCTGACATGATACGT-GA--GGATG--G-CGAGAAGCAC--TGTTT-AGCC
gi|10 : aaaattattgttgttgcaagaacataatcatagcattatgataaggtgcgaaactgccagcaaatctgttgatatggataataatctcccttaaattcactatcagatacatgtatattgaatgaggaagaaataatattcctgtatcctatattcaattaataatttcaactaacgaattttttttcacttcatcaacaaactgtcctagagtgagtatcctctgaatttctgacataatcaagagggctacttgatggatcaagatcacctatttaaactaaaaagaaactgagctcaataggatcacgcagaaaatctggacgagtagaaaagtgacgacttgtaccatgggaatacgttacctttcaaattctttgaatatctgtatttaaaagctggttgttttattgatttatatctaaatacatgtatggaattacgtgggagatgtactgagaagacgtactcaattcattccaacctaatgagttacatgaaaggtggtattaggttttgatgaataataataattatttgttgaattaattacagtaccatagagatcacactctgtctccacccctagtttggaatatgaactaagctcacctgactaccaatattctaaatgaagacgtggaaaaaaccataattggaatgcccccttgggcattgacctacacctgcagtcgaataaacgctgatatttattcataatagtcacatagactcattattaggttcatgctttggccattcttgacatggaaataaaTGCA-AG-TAACTGGTTATT-GAA-G--TA-G-T-TACAC----A-TA-A-CAGA-AA-----AAGAAGTGTCCAG-----AGTGGACAC---T--AAAAATT-AAAT--AT---TTTAT-----CAT-A-TTGT-TAG-A---TTTTCCCTAT--T-TT-CAGGGTA---ATGAT-----ATTTTTA-----AAA--GTA-T-GG-CCT-ATGC-AAG--GTT-A-T-GACGA-AAAATAGAG--TC-TTATT--A-TGAG-CATATGA--T-CTTG--A-AGTCC----ACAATATTC-TG-TA---AG--GCTC--G-CA---CATT--T-----CTAT-GA----ACCCCC
gi|11 : aaaagaatcatctcaaaatctggagagaaaaaaaggagttgttgtaacatgggacatctagctatttgatatagtgttttttgatatctaatacatgtatgatgtggattgaactacaaattccatcaaattaacttcatggaaatggtactagtaaataaatactattgatgtgaaattaattagcatgataaatctgtcatatagaaatcttgccctaattctaaaactgaaacccccattgggccaattgacaccaaccagctaaaaagattattttttccataattgtaactaacatgctcttgcacttctgacatggaaAAGGC---TTTTCA-TCCGAT-CCG----TA----CTACATCAG-ATCCGC-A--TT-CTCTCG-GA-TG-TGGTT-GT-----G------TTGG----TACC--TTATCCCT-ACAA--CCGTCCT-A-----AA-AT--G-TA-CT--ATGC-TT--CTAT-CA-TT-T--TCA-CTCACCA-AGTCTCT-GCAAA----T-GCC-AATT-A-TA-TTAACTAAACACATTTTATCC-G-TGAAATTGA--A-GAAA-GG------C-GT--AA-AT---ACGTTT-GATTTCTGA-TTGTTTA--CATC--TAT--C--CTGC-ATGACTT--------G--TTTTTTTTCGC----C---T-ACT-CAG--AGT-AA-G-TG--CGACC-AG-ACA--TCAT----TTAAAT--ATT---------CACCGGTTAAA--CCAAG-ATGA-TG-A-CCA--CAGC--AA-ACACGAAAAAAA-TAGTTA-TG-------------------ATTG--------TT-TC-----TTTTAATCC--AAT---AA-TTGAT-T----T-CA-T-----AGTTCTACTA-C--TATGGCTG-A--GGAAAAGGC---GT-----------CC-TT-GTCTC-CAGG-A-G---C-CATC-------AC-CG--GA-A------GT-GA--GGTCG-CG-CGAG----AC--TGTGT-AGCCCTAg
gi|12 : TATCCTTCACAC--CCGTCCTTACTAAGAATATAGA-AA-CT-AATGC-TT--CCAT-CA-TT-TGTCCA-CTCACC-GAATCTCTGCCAAA----T-TTA----TTA-TAAATAACGAA-TACATTT-ATCC-G-T-AAAT-GA--G-AAAA-GGAAAAAGC-GTTTAATATTTAGCGTTTTTGTA-TTGA-T-TGTTA--CATTAGTA---C--CTGC-ATGG-TT--CT-TCCGTTTTTTTTT-CGC----C---C-TTT-CA--GAGT-AG-A-TG-GGGAC-----GCA--TC------TT-AAT--G-T---------CACCG--T--A--C--AG-ATGATTG-A-C-A--CACC--AA-ACACGAAAA-AA-TA--TA-TG-------------------TATG--------GT-TC------GTTAATCG-AAATAA-AA-GTGAT-T----T-CA-TTATAGGGTC-TACTG-C--TAT--TTA-A--G--AAAGGCCCAGT-----------CC-TT-GTCTC-CAGGAA-G---T-CCGTA----C-AC-CG--GA-A------GTAGAG-GGTCGCCG-CGt
gi|14 : aggtggagcttaccggnnnnnnnnnnnnnnnnnnnnnnnnnTTC-CGCTATTC---T-ACTTCAG-G-GTGAG-A-TG-GCGACC-AGAGCA--TCCCATCTTTAATT--GTTCGACCCCCGCACCGATTAAA--CCAAG-TGGA-TG-A-C-ATTTA-CCTAA-AC---AGAA-AA-TAGTT--TGT------------------ATTGTAGTTATATC-TCTGATTTTTTAATCCTAGATAAAAA-GTGATATTATAT-CACT-----AGTC-TACTA-C--TAATGCTG-A--G--AAAGGC---GCTTACGGACCCACT-TT-GT-TC-CAGG-ACG---T--ATCCCCATCAAC-CG--GA-
gi|15 : aaccctcattatataaG-CCC-TTATT--A-TGAA-CATATGA--TACATG--A-AGTCC----ACAATATTT-TG-TA---GG---TCT--G-CA---CATT--T-----CTAC-GA----CCCCCCCCCTCC---CC------GTG--TTGATG-A-CGATTTACT-GT-CC-TA-TA--------TCCATA-TT-TTCT-ATTT--TTTA-AC-AT----ATAGG--CA--G-TTGTCAT-CAAATT-CCAGAAATCCT-----TTA-TAAATACT--T-AAAAGC---TTGTC-ATCC-GTACCG----TA----C---ATCAG-ATCTGC-A--TT-CTCTCGT-A-TGGTGGTG-GT-----G-G-GGGTTGGG-GGTG-CCTTTATCCTTCACA---CCGTCCTTA-----AA-ATAGtaaaacaaagtcgagggtgaggagactcgacgcgccatggagactgttttgtagcc
gi|16 : CCG-TGAAAT-AC--ATAAAA-CG------T-GT--AA-ATT-AGCGTTTTGATA-CCGA-T-------------------C--CTAC-ATTGCTT--TC-CCCG---TTTTTT-CGC----C---A-ACT-CGG-GAGT-AG-A-TG-AGTACC-TGGACA--TC------TTACAT--GTT---------CGCCG--TAAA--CCAAG-ATGA-TG-A-T-A--CG-C--AG-ACACGACAA-AA-TAGCTA-TG-------------------ATTA--------TT-TC-----TTTTAACCC-AAAT---AA-GTAAA-T----T-CA-C-----TGT-TTGTTG-C--TAT-GTTG-A--G--AAA--------------------------TATG-CAAA-A-G---T-T-CTC----C-AC-CG--GA-A------GC-GA--G
gi|17 : -AAAA-CG------T-GT--AA-ATT-GGCGTTTTGATA-CTG------------ATTA---------------TG----------------TTTTTT-CAT----C---C-ACC-CAG-GAGT-AA-A-TT-GGTACC-TGGACA--TC------TTAGAT--ATT---------CACCG--TAAA--CCAAG-ATGA-TG-A-T-A--CA-C--AA-ACACGAAAA-AA-TAGTTA------------------------------------------------AATCC-AAAC---AA-GTGAA-T----C-CA-T-----AGT-TTGTTG-C--TATG-CTG-A--G--TAATGT---GC-----------CC-TT-GTCTC-CAGG-A-G---T-C-TTC----C-AC-CG--GA-A------GT-GA--GATCG-CG-CGAGA---A---TGTGT-AGCCCTAactgtagctctattg
gi|18 : TTTTTT-CGC----C---T-ACT-CAG-GAGT-AT-A--A-GCGACC-AGGACA--TC------TTAAAT--GTT---------CACCG--TAAA--CCAAG-ATGA-TG-A-T-A--CA-C--AA-ACACG-AAA-AA-TAGTTA-TG-------------------ATTG--------TT-TC-----TTTTAATCC-AAAT---AA-GTGAT-T----T-CA-T-----AGTC-TACTA-C--TAT-GCTA-A--G--AAAGGC---GT-----------CC-TT-GTCTC-CAGG-A-G---T-C-CTC----C-AC-CG--GA-A------GT-GA--GGTCG-CG-CGAG----AC--TGTGT-AGCCCTt
gi|2 : ctcgTGCA-AG-TAACTAGTTTAT-GAA-G--TAAG-T-TA-AC----AATA-A-CAGA-AA-----AAA---TGTCCA------AGT-GATATAAAT--AA---TT-AAAT--AT---TTTGT-----CATTG-CTATGTTA-A---TTTTCT--AT-AT-TT-C--AGCA---A-GA------ATTTTTTT-T--AAAAAGTC-T-GG-CTTCGTGC-AAGTGGCTCA-G-AACGA-AAGA--GTG-CCA-TGATTCAA-TGAG-CATATGA--TACATGTTATAGTCT----ACACTATC---G-TA---GG---TC-----CA---CATG--T-----CTAGTGA----CCCCTCCCC--C---CC------ATG--TTGATG-A-CATC--ACT-GC-CTATA-TA--------TCCATA-AT-T-CT-ATTT--TT-A-AC-ATA---ATAAG--CA--GATTGCAAT-CAAATT-CCAGGAATCCT-----TTACTAAGTACT----AAAACC---TTTTCA-TCCG-TACCG----TAGCTAC---ATCA--ATCCGC-A--TT-CTCTGGTAAGTGGTGGTGTGT-----T-G-GGG--GGG-GGTACC-TTTATCTACCAC-----CGTCCTTA-----AA--TAGG-TA---TA------T--CTCT-CA-TT-C--TCA-CTCACCA-AGTCTC--GCAAAA---T-GTA-AATT-A-TACTTAAC-AAACA-ATTT-ATCCCG-TGAAAT-GAAGA-AAAA-GG--------GT--AA-A-T-AGCGTTTTGATT-CTGA-T-ATTTA--CATTA-TA---C--CTGCATTGAGTT--AC-CTCG-----TTGT-CGCG---C---T-ACG-CCA-GAGT-AGAA-TG-CTGACC-AGGACA--TC------TTAAAT--GTT---------CACTG--TAAA--CC-AG-AT-A-T--A-C-A--CA-C--AA-ACACGAAAA-AA-TAGTTA--G-------------------AT----------TT-TC------TTTAATCT-AAAT---AA-GTGCT-T----T-CA-T-----AGTC-TA-TA-C--TAT--CTGAA--A--AAAGGC---TC-----------CC-TT-GTCTC-CA-G-A-T---C-CATCA----CA---CG-----A------AT-GAT-CGTCG-CG-CGAG----ACTTTGTGT-AG
gi|20 : atatcattgcattatagtagaataacccatgaataatttgtataaatattatatatcaatataagaataaataccccctgtattccttcaattttaaaaattcaaaaacatattttcttatatcaacaatagtctagagtaagactcctgaattatgattcaagttcgaatgttgatgatcagcgaacctttaaatgaaagacatcacttcaaaatctggaaaaaaggatttgttagcatgggatttagcattggataatctttttgattgataaatatatagatgttattaatgatgaagattctaagtataaatctcaaaaatatgaagggtatagtaaaaaaatactattatgtaatataatgtatgcgaaattaatatgtcgttatattagataatcttgcctacattcttaaaatggacataaacccctggcattgacaccactcagtcaaaatagattattgtatcatcatattgcatacataagactcgatgtatggctcctgcttatctctagatgcattgctgacatgaaaaGAT-T----T-CA-T-----AGTCT-ACTG-C--TATG-CTA-A--G--AAAGGC---GT-----------CC-TT-GTCTC-CAGG-A-G---T--ATTC----C-AC-CT--GA-A------GT-GA--GGTCG-CG-CGAG----AC--TGTGT-AGCCCTA
gi|21 : -T-CT-ATTT--TTTA-AC-ATA---ATATA--CA--G-TTGTCAT-CAAATT-CTAGGAATCCT-----TTA-TAAGTACT--TAAA
gi|3 : TGCA-AG-TA-CTAGTTATT-GA--G--TAAG-TGTACAC----A-TACA-C-----------GAAAGATGTCCA------AGTGGATTC------AA------AAATTAATATTTT-GT-----CAT-A-TTGT-T-A-A---TTTTC---AT-AT-TCAT--GGCA---A-GA------ATTTTTTT-T--AAAA-GTC-T-GG-CCT-ATGC-CAG--GTC-ATT-GACG--AAAATAG----CC-ATA-T--A-TGAG-C-TATGA--TACATG--A-AGTCCA---ACAATATTC-TG-TA----G--GTCT--G--A----ATT--T-----CTAT-GA-----CCCCCCCC--C---CA------GTG--T---TGTG-CAAT--TCA-AT-CTATA-TA--------TCCATATTT-T-CT-A-TT--TTTA-AC-ATA---ATA-G--CA--G--TGTCAT-CAAATT-CCAG--ATCCA-----TT--TAACTATT--TAAAAAGC---TTTTC-ATCC-GTACCGTAC-TA----C---ATCAG---CCGC-A--T---TCTTGT-A-TGGTGGTG-GT-----GTG-GGGGGGGG-GGT---CTTTATCC-ACACAC--CCGTTCCTT-----AA-ATAGGTTA-C-TATTGCTTT--CTATCCA-TT-T--TCACCTCACCA-AGTCGC-TGC--A----TGGTAGAAATTA-TATTTAATAAACCACATTT-AT-CCG-TGAAAT-GA--AGAAAA-AG------C-GT--AA-ATT-AG-GTTTTGATC-CTGA-T-G-TTA--CATTAG-A---C--CTGC-ATTGTTTGACA-CTCG---TGTTTG-CGC----T---A-ACT-CAG-GAGT-AG-ATTG-GCGACA-GAGACA--TC------TTAAAT--GTT---------CCCTG--TAA----CAAG-AT-A-TGCA-C-A--CA-G--AC-ACACGAAAA-AATTAGTTA-TG-------------------A-TG--------TT-TC-----TTTTAATCA-CAAT---AA-GTCTT-A----T-CA-T-----AGTC-TACTACC--TATG--TG-AC-G--AAAGGC---GT-----------CC-TT-GTCTC-CAGG-T-G-----CAT------CA---CG--GA-A------GT-GA--GGTCG-CG-CG-GG---AC--TGTGT-AGCCTTAgc
gi|4 : attgaagatatccctgtattccttcaatttaataaattcaacatattttttttatcaacaaatgtcttcagagtagatcttgaatttgatcaatttgaagtttgatggaatcaagaaccgtttaaattaaagacatcattcaaatctggagaaaaaaggagtttgtcacaggatcatagctatttgatatcgtttattgattatctaaataccatgtatgtgtgatgtctaatagactatataagtctcatcaaatctactcatgataaggtatagttaaaaaaatactagtattgtgaattaatgagcctaataatctgtcactatagaaacttgccctaattctaatgacagaaccccattgcggcagtgacacccactagtcaaagattatttattgcatttggtaactagatcatttaggtcatgcgaatttgcattctgacatggaaaaTT-GAACGCCTAAG-T-TACACTCTCAATA-AACAGA-AAAAGAAGAAATATGTCCACTAAAAAGTAGATAC---T--AA---A--AAATTAATATCTTTATAACAACAT-AATTGT-TTTTA---TTTTC---ATCAT-TT-C--AGGAGCGA-GATTAATTGTTTTTTTCT--AAA--GCC-TTGG-CCT-ATGCGAAG--GTC-A-TTGGCGA-AAA-TAGAGTCCC-TTATT----TGAGGCATATGA--TACATG--A-AGTTCTCCTACAATATTT-TGGTATTTGG--GTCTTTGTCAGTTTATTGTT-----CTCA-GATCCGCCCCCTCCC--C---CCA-----GTG--TGAGTG-A-CGATTCACTTGT-CC-TA-TACATGTATATCCATA-TTGT-CT-ATTT--TTTA-AC-ATA---ATAAG--CA--G-TTGTCAT-CAAATT-CCAGGAATCCTTTAAATTA-TAAATACT--T-AAAAGC---TTTTC-ATCC-GTACCG----TA----C---ATCAG-ATCCGC-A--TT-CTCTCGT-A-TGGTGGTG-GT-----------GTT-GG-GGTA-CCTTCATCCTTCACA---CCGTCCTTA-----AA-ATAGG-AA-CT--ATGC-TT--CTAT-CA-TT-T--TCA-CTCACCA-AATTTC-TAC-AA----T-GGA-AA-TTA-T-ATTAACTAA--ACATTT-AT-CCG-TGAAAT-GG--A-t
gi|5 : tatacgaagaataatctcctgtattccttcatcaaattcaaaatatttttttatatcaacaaatagtctagatcgagtagattctctgaatttctgatacaagtttgatggaatcaagaactttaaataaagacattcagttcaaaaaatctcggagtgatgtgaaagtttttaccaaaagggagttttgtacaattgggatctttagctagttaatgtgatatcctgttttgtactgattatctaacatacatgtatgatgtatgtctgtatgaatacttaaacctcctcatcaaatctaacttcataaatgggaaaatgggtataggctttaataacataactattaattgccgtgagcttaagttaatgtagccatgataattcgtcatatagaaaaatcttgccctaatttcttaaatgactgaaacccccattgggcgaatttaaatgagacccactcagttcaaaaagatatctgtttttcagtaattatgttaactaggaattcattctaggcttcatgcttgtgcgctatttctgtcaatgcgccaaaaatgcccatataggttctattacacTGCA-AGGTA-CTAGTTATTTGAA-GC-TAAGCT-TACAC----AATA-A-CAGATAA-----AGAAGA-GTCCA------A-TTGATAC---T--AAAA-TT-AAAT--AT----TTAT-----CAT-A-TTGT-T-A-A---TTTTC---AT-AT-T--C--AGTA---A-GAT------TTTTTTT-T--AAA--GTC-T-GG-CCT-AGCC-AAG--GTT-A-T-GACGA-AAA-TA-AG-CCC-TTATC--A-TGAG-CATACGA--TACAGG--A-AGTCC----ACAATATC---G-TA---CGCCGTCT--G-CA---CATT--T-----CTAT-GA----CCCCCCCCC--CTTTCC------AGGGTTGATTC-A-C------------CC-TAATA--------TACAT--TT-C-CT-ATTT--TAAACAC-ATA---ATA-AGCCA--T-TCGTCATTCAGATT-C-AGAAATCAT-----TTA-GAAGTACT---GAAAAGCCCTTTTTCA-TCC--TACCGATACTA----C---ATCAG-ATCCGC-A--TT-CTCTCGTGG-TGGTGGT--GT-----G-GTGGGCGGGA-GGTACCTTATATCCTTCACAC--CGGCCTTAA-----AA-ATAGG-TA-CT--ATGC-TTTCTTAT-CA-TTGT--TCACCTCACCAAGATCTC-TACAAAATGCT-ATA-AATT---TAATTAAT--AACACATTTCATCACGCTGAAAT-GA--A-GAAA-GG------C-GTA-AA-ATT-AGCG-TTTGATT-CTGATT-GCTTA--CATTAGTA---C--CTGC-AT-GTTT--AC-CTCG--TTTTTTT-CGC----C---CAACT-CA--GAG--AG-A-TGTGCGACC-AGGACA--TCT-----TTAAAT--GTT---------CACCG--TAAA--CCAA--ATGA-TG-ACC-A--TA-C--AA-ACACGAAAA-AATTAGTTAGTG-------------------TTTG--------CT-TC-------TGAATCC-AAAT---AA-GTGAT-T----T-CA-T-----AGTC-TACTA-C--TATGCCTG-A--G--AAAGG----GT-----------CCATT-G-CTC-CAGG-A-G---TCCAATC------AC-CG--CA-A-------T-GAGGGGTCG-CG-CGCAA---AC--TGTGTCAGCCCgcattgaaaatttgtatttaatttcattg
gi|6 : tgttttattggatcatcttagaatacatgtatgatgttgctgatgtctgaatgaagtataattcatcaacttaacttcatggaaaggtatagttaaaacaaacttattagtgaattgaatgtagccatgataaagctgctcatatagaaaatctggccctcaattcttaaatgactgaaacccccaacttgggcgaattgacaccactcagtcagaacattttcataattgtctacgctatgactaatttacgctcatgctttgcattccgacatggaaaaaaTGCA-AG-TA-CTAGTTAT--GAA-G--TTAG-T-TACAC----AATA-A-CAGA-AA-----GAAAGATGTTCA------AGTTGATAC---T-------TT-AAAT--ATATTTTTAT-----CAT-A-TTGT-TTA-A---ATTTC---AT-AT-TT-C--GGTA---T-GAT-----ATTTTTT------AA--GTCCT-GG-CCT-AT-C-ATG--GTT-A-T-G-CGA-AAAATGGAG-CCC-TTATT--A-TGAA-CATATGA--TACATG--A-AGTCC----A-AATATGT-TG-TA---GA--GTCTT-G-CA---CATT--T-----CTAAAGA----CCCCCCCTC--C---CC------GTG--TGAATG-A-CGAT--ACT-GT-CC-TA-TA--------TCCATA-TT---CT-ATTT--TTTA-AC-ATA----TG-G--CA--G-TTGTCAT-CAAATT-CCAGAAATCCT-----TTA-TAAATACT--TAAGAAGC---TTGTCAATCCGGTACCG----TA----C---ATCA--ATCTGC-AATCT-CTCTCGTAA-TGGTGGTG-GT-----G-G-GGGTTGGGTGGTGCCCTTTATCCTTCACAC--CCGTCCTTA-----AA-ATAGG-AAACTTAACGC-TT--CTAT-CA-TT-T--TCA-CTCACCAGAATCTCTTGCAAA----T-GTA-AATTTAATAATTAACGAAACACAATT-ATCCCG-TCAA-T-GA--A-AAAA-GG------C-GT--AA-ATT-AGCGTTTTGATG-CTGA-T-GTTTAAGCATTAGTAAAGC--CT-C-TTGGTTT--CC-CCCG--TTTTTTT-CGC----C---T-ACT-CAGTGAGT-AG-A-TG-GCGACCCAGGACA--TC------TTAAATTTGTT---------AACCG--TAAA--CCAAG-ATGA-TG-A-C-A--CA-CT-AA-ACACGAAAA-AA-T-GTTA-TG-------------------ATTG--------TT-TC-----TTTTAATCC-AAAT---AC-GTGAT-T----T-CA-T-----AGTCTTACTG-C--TATGGCTA-A--G--AAAGGC---GT-----------CC-TTGGTCTC-CA-G-A-G---T-TATTC----CAAC-CG--GA-A------GT-GA--GGTCG-CGCCGAGA---AC--TGTGT-AGCCCTA
gi|7 : TGCA-AG-TA-CTAGTTAT--GAA-G--TTAG-T-TACAC----AATA-A-CAGA-AA-----GAAAGATGTTCA------AGTTGATAC---T-------TT-AAAT--ATATTTTTAT-----CAT-A-TTGT-TTA-A---ATTTC---AT-AT-TT-C--GGTA---T-GAT-----ATTTTTT------AA--GTCCT-GG-CCT-AT-C-ATG--GTT-A-T-G-CGA-AAAATGGAG-CCC-TTATT--A-TGAA-CATATGA--TACATG--A-AGTCC----A-AATATGT-TG-TA---GA--GTCTT-G-CA---CATT--T-----CTAAAGA----CCCCCCCTC--C---CC------GTG--TGAATG-A-CGAT--ACT-GT-CC-TA-TA--------TCCATA-TT---CT-ATTT--TTTA-AC-ATA----TG-G--CA--G-TTGTCAT-CAAATT-CCAGAAATCCT-----TTA-TAAATACT--TAAGAAGC---TTGTCAATCCGGTACCG----TA----C---ATCA--ATCTGC-AATCT-CTCTCGTAA-TGGTGGTG-GT-----G-G-GGGTTGGGTGGTGCCCTTTATCCTTCACAC--CCGTCCTTA-----AA-ATAGG-AAACTTAACGC-TT--CTAT-CA-TT-T--TCA-CTCACCAGAATCTCTTGCAAA----T-GTA-AATTTAATAATTAACGAAACACAATT-ATCCCG-TCAA-T-GA--A-AAAA-GG------C-GT--AA-ATT-AGCGTTTTGATG-CTGA-T-GTTTAAGCATTAGTAAAGC--CT-C-TTGGTTT--CC-CCCG--TTTTTTT-CGC----C---T-ACT-CAGTGAGT-AG-A-TG-GCGACCCAGGACA--TC------TTAAATTTGTT---------AACCG--TAAA--CCAAG-ATGA-TG-A-C-A--CA-CT-AA-ACACGAAAA-AA-T-GTTA-TG-------------------ATTG--------TT-TC-----TTTTAATCC-AAAT---AC-GTGAT-T----T-CA-T-----AGTCTTACTG-C--TATGGCTA-A--G--AAAGGC---GT-----------CC-TTGGTCTC-CA-G-A-G---T-TATTC----CAAC-CG--GA-A------GT-GA--GGTCG-CGCCGAGA---AC--TGTGT-AGCCCTA
blockSeqs : . G A TT C CC C G TCTC A CA T AAGAA CTAAAA G TAAAAATT TA ATT AACAA T A G TTT . CCT C . A AGG GCGA TTAATTG TCT AA C T . C G G TG C T T A . A T . CAA G . TT T TCCT C TC G TTTGGG TT T GTT GT . GT TCCG TC TTTCC GT TGA T . TT T . A A CATGTATA T TT . . C . A AGC . A T . A TTAAA C A TA CCT AA GA ATAC GCTA TAC G . AT . AAG T GTG TT T AC C A CTAAG T TT ACTTA T TC C . G GT C G TG A ATGC G G T TAA AA T A T C C T AG T . AAAAAGC TT T T TT TTGT AG GTAAAG . G AT GAC GACA C TTT T TATT CA T T G A T T C . CCATCT TT CGACCCCCG GT . . T C C C TT G CT . A T G TATTGTAGTTATA . TGATTT T AAA . A TATA . C TATAG C C . GG A C GA CCA TTACGGACCCA A G . G A C TATCCCCATCA . . . . A GG C C A TT C
blockSeqs : . . A T . C . . . A AA . . G G AAATAATT TA ATC . . . . AG . T . . . A AT TA TT A C . . . G . . . . . A . A . . A . . . . A C TT . CGCCG T . . . . AA . . CCA . TGA . . TC . . A . . . GT . . . . A GG . . . . G . . G TA . AA GG TAC . . G . AT . GA . GGT TT T AC C C . . T ACTTA . . . . . . C A TT A A . . T TAA AC G A C C . . . G . C A . . A TTGC AG GTAAAG . G A TGC CT C T . G T . T . . . . C . AT TT . AT . . . . . . . C T . . T . ATTG . T . AA . . . . . . T . . TG . . . . . . G . G . . CCATCACA . . . . . G . C G . .
blockSeqs : . . . T . . . . . A A . . . A TAAAATT . ATT . . . . TA . . . . . G A TA TT . . . . . G . . . . . A . A . . A . . . . . C TC . AGG T . . . . AA . . CC . GAG . . . . . . . . . T . . . . A AG . . . . G . . G TA . A GG . . . G . . . GG . GG GG . AC C C . . A CTA . . . . . . . G TT A . . . A TA AT A C . C . . . . . T . . . A TTG . TAT . A A GAG TC T T . . C . . . . . . . . T . . . . . . . . . . . T . . . . TATG . T . . . . . . . . T . . GC . . . . . . . . G . . TTATTCCA . . . . . T . . A . .
blockSeqs : . . . T . . . . . A A . . . T TAAA . ATT . . . . TA . . . . . A A TA TT . . . . . G . . . . . G . A . . A . . . . . C TT . GAG . . . . . T . . CC . GAT . . . . . . . . . T . . . . A TA . . . . G . . C TA . A G . . . G . . . AA . TG TT . GC T C . . T CTA . . . . . . . G T A . . . T TA AA T A . C . . . . . T . . . A TAT . GTA . G A TGT AC T T . . T . . . . . . . . . . . . . . . . . . . . . . . . . ATTA . T . . . . . . . . T . . GG . . . . . . . . A . . TTATTCCA . . . . . . . . A . .
blockSeqs : . . . T . . . . . A A . . . T TTT . . . . . . TA . . . . . A A A . . . . . . C . . . . . A . A . . A . . . . . C GT . GAG . . . . . C . . CA . GAA . . . . . . . . . T . . . . A AG . . . . A . . A T . A G . . . G . . . AA . GG CG . GC C C . . A CT . . . . . . . . T A . . . T TA AA G A . C . . . . . C . . . T TGT . GTA . G A GGT AC T T . . A . . . . . . . . . . . . . . . . . . . . . . . . . ATTG . T . . . . . . . . T . . GG . . . . . . . . G . . TCCGTAC . . . . . . . . A . .
blockSeqs : . . . . . . . . . . A . . . T TTT . . . . . . A . . . . . G T A . . . . . . . . . . . . . . . . . A . . . . . C GT . GG . . . . . T . . CC . GAA . . . . . . . . . C . . . . A G . . . . A . . G T . A G . . . . . . . A . GG TT . G C C . . T TA . . . . . . . . T A . . . T A AA G A . C . . . . . C . . . C TGT . TA . G A GGT CC C . . . C . . . . . . . . . . . . . . . . . . . . . . . . . TTTG . T . . . . . . . . T . . G . . . . . . . . G . . TCCAATC . . . . . . . . . . .
blockSeqs : . . . . . . . A . . . . AA . . . . . . A . . . . . G T T . . . . . . . . . . . . . . . . . A . . . . . . C . GG . . . . . A . . CC . . . . . . . . . . . . . . . . . G . . . . A . . A G . A G . . . . . . . A . G TT . A . . . . A CT . . . . . . . . T . . . . . A A . . . . . . . . . C . . . T TG . GA . . T GG CC C . . . T . . . . . . . . . . . . . . . . . . . . . . . . . ATTG . T . . . . . . . . . . . G . . . . . . . . G . . TTCTCC . . . . . . . . . . .
blockSeqs : . . . . . . . . . C . GG . . . . . T . . . . . . . G . . . . . . . A . . A . . . . . . . . A . . . . . . . . . A CT . . . . . . . . . . . . . . . A . . . . . . . . . C . . . G T . . . . T GT . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . ATTG . . . . . . . . . . . . . G . . . . . . . . G . . TCTTCC . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . G . . . . . . G . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . ATG . . . . . . . . . . . . . G . . . . . . . . G . . TCCTCC . . . . . . . . . . .
blockSeqs : . . . T . . . . . . . . . . . . . . . . . . . . . . . . . AT . . . . . . . . . . . . . G . . . . . . . . . . . TATTCC . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . CCATC . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . CATCA . . .
blockSeqCons : A** TAAAATT******* *** G** A**** TA***** TT*** A*** ** TT* GG****** ***** CC********* ** ** A*** G*** ** TA** **** G* GA* GG******* C** T* AA C******* TGT** ** GGT CC*** T** T**** ** ** ** ATTG*************************** ** G* ** TCCTCC********** ** ****** A***
originalCons : TGCA-AG-TA-CTAGTTATT-GAA-G--TAAG-T-TACAC----AATA-A-CAGA-AA-----GAAAGATGTCCA------AGTNGATAC---T--AA---TT-AAAT--ATATTTTTAT-----CAT-A-TTGT-TTA-A---TTTTC---AT-AT-TT-C--GGTA---A-GAT-----ATTTTTTT-T--AAA--GTC-T-GG-CCT-ATGC-AAG--GTT-A-T-GACGA-AAAATAGAG-CCC-TTATT--A-TGAG-CATATGA--TACATG--A-AGTCC----ACAATATNT-TG-TA---GG--GTCT--G-CA---CATT--T-----CTAN-GA----CCCCCCCCC--C---CC------GTG--TGAATG-A-CGAT--ACT-GT-CC-TA-TA--------TCCATA-TT-T-CT-ATTT--TTTA-AC-ATA---ATA-G--CA--G-TTGTCAT-CAAATT-CCAGGAATCCT-----TTA-TAAGTACT--TAAAAAGC---TTTTCAATCCGGTACCG----TA----C---ATCAG-ATCCGC-A--TT-CTCTCGTAA-TGGTGGTG-GT-----G-G-GGGTTGGG-GGTACCCTTTATCCTTCACAC--CCGTCCTTA-----AA-ATAGG-NA-CTTAATGC-TT--CTAT-CA-TT-T--TCA-CTCACCAGAATCTCTTGCAAA----T-GTA-AATTTA-TAATTAACNAAACACATTT-ATCCCG-TGAAAT-GA--A-AAAA-GG------C-GT--AA-ATT-AGCGTTTTGATN-CTGA-T-GTTTA--CATTAGTA---C--CTGC-NTGGTTT--CC-CCCG--TTTTTTT-CGC----C---T-ACT-CAG-GAGT-AG-A-TG-GCGACC-AGGACA--TC------TTAAAT--GTT---------CACCG--TAAA--CCAAG-ATGA-TG-A-C-A--CA-C--AA-ACACGAAAA-AA-TAGTTA-TG-------------------ATTG--------TT-TC-----TTTTAATCC-AAAT---AA-GTGAT-T----T-CA-T-----AGTCTTACTG-C--TATGGCTG-A--G--AAAGGC---GT-----------CC-TT-GTCTC-CAGG-A-G---T-CATTC----CAAC-CG--GA-A------GT-GA--GGTCG-CG-CGAGA---AC--TGTGT-AGCCCTA
finalCons : TGCA-AG-TA-CTAGTTATT-GAA-G--TAAG-T-TACAC----AATAA--CAGA-AA-----GAAAGATGTCCA------AGTNGATACTAAAATT-------AAAT--ATATTTTTAT-----CAT-A-TTGT-TTA-A---TTTTC---AT-AT-TT-CG--GTAA----GATA-----TTTTTTTT---AAA--GTC-T-GG-CCT-ATGC-AAG--GTT-A-T-GACGA-AAAATAGAG-CCC-TTATTA---TGAG-CATATGA--TACATG--A-AGTCC----ACAATATTT-TG-TAGG------TCT--G-CA---CATT--T-----CTAN-GA----CCCCCCCCC--CCC---------GTG--TGAATG-A-CGAT--ACT-GT-CC-TA-TA--------TCCATA-TT-T-CT-ATTT--TTTA-AC-ATAA---TAG---CA--G-TTGTCAT-CAAATT-CCAGGAATCCT-----TTA-TAAGTACTTA--AAAAGC---TTTTCAATCCGGTACCG----TA----C---ATCAG-ATCCGC-A--TT-CTCTCGTGA-TGGTGGTG-GTGG-------GGGTTGGG-GGTACCCTTTATCCTTCACAC--CCGTCCTTA-----AA-ATAGG-NA-CTTAATGC-TT--CTAT-CA-TT-T--TCA-CTCACCAGAATCTCT-GCAAA----T-GTA-AATTTA-TAATTAACNAAACACATTT-ATCCCG-TGAAAT-GA--A-AAAA-GGC-------GT--AA-ATT-AGCGTTTTGATN-CTGATGT--TTA--CATTAGTA---C--CTGC-NTGGTTTCC---CCCGT--TTTTTT-CGC----CT----ACT-CAG-GAGT-AG-A-TG-GCGACC-AGGACA--TC------TTAAAT--GTT---------CACCG--TAAA--CCAAG-ATGA-TG-A-C-A--CA-C--AA-ACACGAAAA-AA-TAGTTA-TGATTG---------------------------TT-TC-----TTTTAATCC-AAAT---AA-GTGAT-T----T-CA-T-----AGTCTTACTG-C--TATG-CTG-A--G--AAAGGC---GT-----------CC-TT-GTCTC-CAGG-A-GTCCTCC----------AC-CG--GA-A------GT-GA--GGTCG-CG-CGAGA---AC--TGTGT-AGCCCTA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATACAACAGACTCGAAATGCTGATCAATATCTATCATAATCTGGAAAGAAATATAAATTAGATATATGTATAGTATTATCTATCAATAATTTAGTATGAAAAAGAAATTGAGACACGGCAATTGAAACTTGTATTTTATTTTACATTAACTTGATCTGGATCTTATAACATGAGATACTGATAACAATGTTTTTTCCGACCTAAAAATATTTAGTGCGTGTTTCAAAATTAACAGATTTGAAGAAGAAAAGCAGTATTCCTATCTGTCCTGGTATGTTACAGGAATTCAATTTAATCCAGTGTCACTTTTCAACAATCCAAAACAACCATCACAGCAGTTTGAGCCTCAGTTATCTTGGGGGGAAAACCTCCTGCAATTTAAAAAAATAAAATTATTGTTGTGCACGAAATAATTCTTTGCATATGTAAGTGGAACTGCAATAATTGCATAGATATGTATCTATACTGAAGAATAATCTCTTGTATTTCCTTCCAATTTTGAAATAAATTCAAACATATTTTTTTTTATAATCAACAAATAGTCCTAGAAGTAGAGTCTCTGAATTTTGATAACCAAAGTTTGGATGGATCAAAGAAACTTTAAATAAGACATCAAATTCACAATCTGGAAGAAAGGATGTTTGACATGATCTAGCTAATTTGATATCTGTTTTATTGATGTCTAAATACATGTATGAATGAATATTAAATTCATGCAAATTATTTTCAATGGAAAGGGTATAGTAAAAAGAATACTATTATGTATTG
Unaligned ( gi|9 ): ATACAACAGACTCGAAATGCTGATCAATATCTATCATAATCTGGAAAGAAATATAAATTAGATATATGTATAGTATTATCTATCAATAATTTAGTATGAAAAAGAAATTGAGACACGGCAATTGAAACTTGTATTTTATTTTACATTAACTTGATCTGGATCTTATAACATGAGATACTGATAACAATGTTTTTTCCGACCTAAAAATATTTAGTGCGTGTTTCAAAATTAACAGATTTGAAGAAGAAAAGCAGTATTCCTATCTGTCCTGGTATGTTACAGGAATTCAATTTAATCCAGTGTCACTTTTCAACAATCCAAAACAACCATCACAGCAGTTTGAGCCTCAGTTATCTTGGGGGGAAAACCTCCTGCAATTTAAAAAAATAAAATTATTGTTGTGCACGAAATAATTCTTTGCATATGTAAGTGGAACTGCAATAATTGCATAGATATGTATCTATACTGAAGAATAATCTCTTGTATTTCCTTCCAATTTTGAAATAAATTCAAACATATTTTTTTTTATAATCAACAAATAGTCCTAGAAGTAGAGTCTCTGAATTTTGATAACCAAAGTTTGGATGGATCAAAGAAACTTTAAATAAGACATCAAATTCACAATCTGGAAGAAAGGATGTTTGACATGATCTAGCTAATTTGATATCTGTTTTATTGATGTCTAAATACATGTATGAATGAATATTAAATTCATGCAAATTATTTTCAATGGAAAGGGTATAGTAAAAAGAATACTATTATGTATTG
Unaligned ( gi|13 ): TCGTTGCATCATGTAAGTGTGAAACTGAAGAAAATTGTATAGAATAGTTATGATCTAGTATGAAGAATAATCAAACTGTATTCCTTTCAATTTTAAACATATTTTTTATATTTATCAAAGCAAATATAGTCTAGAAGATCTCTGAATTCTGATACAAGTTTGATGGATCAAGAACCTTTAAATAAGACACTCAGTCAAAATCTGGAGGGAAAAGAAAGACGATATTTTACAGTGGGGATCTAGCTCTGAGTGTGGATATCTGTTTTATTGTTAATCTAAATACATGTATGATGGGATGAATATGTAAATTCATCAAATTAACTTCATGGAA
Unaligned ( gi|19 ): TATATGAAAATAATCTGCCTGTATTCCTTCAATTTTAATATTCAAAATACTTTTATCATCAAAACAATAGTCCTAAAAGCGGTTCTCTGAAGTTCTGAATAAAAGTTGAT
Alignments
lowQualScore : 1 11 1111 11111 111111 1 111111111 11111 111 11111 1111111 11111 11 1 1 1 111 11111 11 1111 11111 11 22222222222 11111 22222222 1 111 1111 11111 1111 22 11 1111 111 11 11 11 11 111 11111 22 1 11 1111 1111 11111111 11 111111 11111 1111 1 111111 111111111 11 11 3333333333333333333333333333333 111111 111 1 111 11111111111 2222222222 11 1111
lowQualScore : 5 5 1 88 5 11 3 5 5 0000 777 5 22222 0 999999 0 0 333333333 5 3 6 0 22222 5 5 5 777 888 333 5 5 5 999 66666 8888888 55555 11 0 5 5 5 1 5 0 66 5 0 5 5 9 0 4 4 7777 4 66 66 4 9999 55 111 11111 4 55 5555 4 777 66 11111 44 9999 66 66666666666 66 222 5 5 0 44444 5 5 88888888 5 0 222 4 66 4 4 4 9999 4 9999 66 4 4 4 2 11111 4 2 4444 777 00 77 8888 9999 555 11 4 22 4 66 4 00 777 55 8 88 2 000 00000 4 55 8 55 4 66 4 4 4 66 8 5 00 4 3333 4 4 2 1 1111 9 4 8 1 5 4 0 4 55 7 4 33333333 55 4 4 4 0 55 8 55 0 11 999999 55 5 66 999 22222 1 888 3 0000 88888 6 0 3 3 3 3 6 44 777777 99 333333333 33 44 3 3 3 3 3 44 6 11 3 3 6 3 1111111111111111111111111111111 3 333333 3 000 3 3 6666 3 3 77777 2 3 44 3 333 3 77 44 555 44444444444 3 6 3 3 555 3 2222222222 6 3 3 999999 3 11 3 7 9999 55 4
lowQualScore : . . . .. . .. . . . .... ... . ..... . ...... . . ......... . . . . ..... . . . ... ... ... . . . ... ..... ....... ..... .. . . . . . . . .. . . . . . . . . .... . .. .. . .... .. ... ..... . .. .... . ... .. ..... .. .... .. ........... .. ... . . . ..... . . ........ . . ... . .. . . . .... . .... .. . . . . ..... . . .... ... .. .. .... .... ... .. . .. . .. . .. ... .. . .. . ... ..... . .. . .. . .. . . . .. . . .. . .... . . . . .... . . . . . . . . .. . . ........ .. . . . . .. . .. . .. ...... .. . .. ... ..... . ... . .... ..... . . . . . . . .. ...... .. ......... .. .. . . . . . .. . .. . . . . ............................... . ...... . ... . . .... . . ..... . . .. . ... . .. .. ... ........... . . . . ... . .......... . . . ...... . .. . . .... .. .
lowQualScore : 7 7 4 22 0 99 6 0 0 6666 111 0 55555 2 444444 8 4 000000000 0 2 2 4 55555 0 0 0 666 888 888 0 0 0 111 22222 0000000 44444 99 0 0 0 0 9 0 5 99 0 0 1 0 4 4 4 4 0000 4 11 11 4 4444 66 000 11111 4 00 9999 4 888 11 11111 33 4444 99 44444444444 99 666 0 0 2 66666 0 0 11111111 0 0 444 4 11 8 4 4 7777 4 1111 11 4 4 4 7 11111 4 7 2222 888 11 99 9999 4444 666 11 4 22 4 44 4 66 222 11 9 11 9 555 00000 0 44 9 33 4 11 4 4 4 11 9 8 88 4 9999 4 4 0 9 9999 7 6 9 1 0 0 8 0 55 3 0 77777777 55 0 0 0 8 00 0 66 7 00 555555 55 7 44 444 77777 4 777 3 4444 33333 7 0 3 3 3 3 7 66 555555 22 333333333 88 66 3 3 3 3 3 66 7 22 3 3 7 3 8888888888888888888888888888888 3 666666 3 444 3 1 5555 1 1 77777 2 1 22 1 111 1 33 22 444 66666666666 1 2 1 1 444 1 4444444444 2 1 1 666666 3 22 6 3 1111 55 0
consensus : TGCA-AG-TA-CTAGTTATT-GAA-G--TAAG-T-TACAC----AATA-A-CAGA-AA-----GAAAGATGTCCA------AGTNGATACT-AAA--A--TT-AAATATATTTTTAT-----CAT-A-TTGT-TTA-A---TTTTC---AT-AT-TT-C--GGTA---A-GAT-----ATTTTTTT-T--AAA--GTC-T-GG-CCT-ATGC-AAG--GTT-AT-GACGA-AAAATAGAG-CCC-TTATT--A-TGAG-CATATGA--TACATG--A-AGT----CCA-CAATAT-TCTG-----TA-G--GTC--T-G-CA---CAT--TT-----CTAN-GA----CCCCCCCC--CC---CC------GTG--TGAATG-A-CGA--T--AC-TGT-CC--------TA-TATCCATA-TT-T-CT-ATTT--TTTA-AC-ATA---AT-A-G--CA--G-TTGTCAT-CAAATT-CCAGGAATCCT-----TTA-TAAGTACT--TAAAAAGC---TTTTCAATCCGGTACCG----TA----C---ATCAG-ATCCGC-A--TT-CTCTCGT-GA-TGGTGGTG--GTG-G-GGGTTGGG-GGTACCCTTTATCCTTCACAC--CCGTCCTTA-----AA-ATAGGN-A-CT-AATGCTT-C--TATC-A-TT-T--TCAC-TCACCAGAATCTCT-GC-AAA----TG-TA-AATTTA-TAATTAACNAAACACATTT-ATCCCG-TGAAAT-GA--A-AAAA-GG------C-GT--AA-A-TT-AGCGTTTTGATN-CTGA-T-GTTTA--CATTAGTA---C--CTGC-NTGGTTT--CC-CCCG--TTTTTTT-CGC----C---T-ACT-CAG-GAGT-AG-AT-G-GCGACC-AGGACA--TC------TTAAAT--GTT---------CACCG--TAAA--CCAAG-ATGA-TG-A-C-A--CA-C--AA-ACACGAAAA-AA-TAGTTA-TG-------------------ATTG--------TT-TC-----TTTTAATCC-AAAT---AA-GTGAT-T----T-CA-T-----AGTCTTACTG-C--T-AT-G-CTG-A--G--AAAGGC---GT-----------CC-TT-GTCTC-CAGG-A---G-TC-C---TC---C-AC-CGGA-A------GT-GA--GGTCG-CG-CGAGA---AC--TGTGT-AGCCCTA
Reference ( family-675 ) : TGCA-AG-TA-CTAGTTATT-GAA-G--TAAG-T-TACAC----AATA-A-CAGA-AA-----GAAAGATGTCCA------AGTNGATACT-AAA--A--TT-AAATATATTTTTAT-----CAT-A-TTGT-TTA-A---TTTTC---AT-AT-TT-C--GGTA---A-GAT-----ATTTTTTT-T--AAA--GTC-T-GG-CCT-ATGC-AAG--GTT-AT-GACGA-AAAATAGAG-CCC-TTATT--A-TGAG-CATATGA--TACATG--A-AGT----CCA-CAATAT-TTTG-----TA-G--GTC--T-G-CA---CAT--TT-----CTAN-GA----CCCCCCCC--CC---CC------GTG--TGAATG-A-CGA--T--AC-TGT-CC--------TA-TATCCATA-TT-T-CT-ATTT--TTTA-AC-ATA---AT-A-G--CA--G-TTGTCAT-CAAATT-CCAGGAATCCT-----TTA-TAAGTACT--TAAAAAGC---TTTTCAATCCGGTACCG----TA----C---ATCAG-ATCCGC-A--TT-CTCTCGT-GA-TGGTGGTG--GTG-G-GGGTTGGG-GGTACCCTTTATCCTTCACAC--CCGTCCTTA-----AA-ATAGGN-A-CTTAATGCTT-C--TATC-A-TT-T--TCAC-TCACCAGAATCTCT-GC-AAA----TG-TA-AATTTA-TAATTAACNAAACACATTT-ATCCCG-TGAAAT-GA--A-AAAA-GG------C-GT--AA-A-TT-AGCGTTTTGATN-CTGA-T-GTTTA--CATTAGTA---C--CTGC-NTGGTTT--CC-CCCG--TTTTTTT-CGC----C---T-ACT-CAG-GAGT-AG-AT-G-GCGACC-AGGACA--TC------TTAAAT--GTT---------CACCG--TAAA--CCAAG-ATGA-TG-A-C-A--CA-C--AA-ACACGAAAA-AA-TAGTTA-TG-------------------ATTG--------TT-TC-----TTTTAATCC-AAAT---AA-GTGAT-T----T-CA-T-----AGTCTTACTG-C--T-AT-G-CTG-A--G--AAAGGC---GT-----------CC-TT-GTCTC-CAGG-A---G-TC-C---TC---C-AC-CGGA-A------GT-GA--GGTCG-CG-CGAGA---AC--TGTGT-AGCCCTA
gi|1 : TGCACAG-TA-CTAGTTATT-GAA-G--TAAG-T-TACAC----AATA----AGA-AG-----TGAAGATGT-CA------AGT-GAT-CT-AAA--A--TTAAAAGACATTTTAGT-----CAT-A-TTGT-ATA-AGTTTCTTC---AT-ATCTT-C----TAG--A-AAT-----TTTTTTTT-TTAAAA--GTC-T-GGTCCT-AT-----A--GTT-AT-GACAAGAAAATAGAG-CCCATTGTT--AGTGAG-CATATGAATTACATG--A-AGT----CCA-CAATATATCTG-----T--G--GTC--T-G-CA---CAT--TTTCTCATTGG-AA----CCCCTCCC--CCGA-CTTACAAAGAG--TGATTG-ATTGG--TC-AC-TATACC--------TA-TATCCATATTT-T-CTGATTTTATTTA-ACAATAGATAT-A-GAACAGCG-TTGTCAT-CAGATTCCCAGGAATTCA-----TTG-TATCTACTTGTAAACAGC---TTTTC-ATCC-GTACCGGTACTA----C---AT--GCATCCGCGA--TTCCTCTGGTAGG-TGGTGGTGTTGGG-G-GGGGGGGG-GGTAACCTTTATCCTCCACACCGCCGTCCTTA-----AA-ATAGGT-A-TT--ATGCCT-C--ATTC-ATTT-T--TCAC-TCACCCAAATCTC--GA-AGA----TG-TA-AATTTA-T-ATTAACTAAACACATTT-AT-CCG-TGAAAT-GA--A-GAAATGG------CGGT--AA-T-CT-AGCG-TTTGATT-CTGATT-GTTTA--CATTAGTA---CCACTAT-TT--TTA--CCACTCG--TTTTTTG-CAG----CATAT-ACTACAGAGAGC-A--AT-G-GCTACC-AGGACAATCC------TTAAA---GTC---------TACTGGCTAAATTCCAAGTATGA-GC-A-T-A--C--C--AACACACGAAAA-AA-TAGTCC-TGGATAGACGGGCATACAGCAATTA--------TTGTC-----TTTTAACCA-AAAT---AATGTGAT-T----TCCA-T-----AGTCCTACTA-CATC-ATGG-CTG-ACTG---AAGGC---GT-----------CC-TT-GTCTTGCAGG-A---GCTC-CCA-TCAAAC-ACGCTGACATGATACGT-GA--GGATG--G-CGAGAAGCAC--TGTTT-AGCC
gi|10 : aaaattattgttgttgcaagaacataatcatagcattatgataaggtgcgaaactgccagcaaatctgttgatatggataataatctcccttaaattcactatcagatacatgtatattgaatgaggaagaaataatattcctgtatcctatattcaattaataatttcaactaacgaattttttttcacttcatcaacaaactgtcctagagtgagtatcctctgaatttctgacataatcaagagggctacttgatggatcaagatcacctatttaaactaaaaagaaactgagctcaataggatcacgcagaaaatctggacgagtagaaaagtgacgacttgtaccatgggaatacgttacctttcaaattctttgaatatctgtatttaaaagctggttgttttattgatttatatctaaatacatgtatggaattacgtgggagatgtactgagaagacgtactcaattcattccaacctaatgagttacatgaaaggtggtattaggttttgatgaataataataattatttgttgaattaattacagtaccatagagatcacactctgtctccacccctagtttggaatatgaactaagctcacctgactaccaatattctaaatgaagacgtggaaaaaaccataattggaatgcccccttgggcattgacctacacctgcagtcgaataaacgctgatatttattcataatagtcacatagactcattattaggttcatgctttggccattcttgacatggaaataaaTGCA-AG-TAACTGGTTATT-GAA-G--T-AG-T-TACAC-----ATA-A-CAGA-AA-----AAGAAGTGTCCAG-----AGTGGACACTAAAA--A--TT-AAATA---TTTTAT-----CAT-A-TTGT-TAG-A---TTTTCCCTAT--T-TT-CAGGGTA---ATGAT-----A--TTTTT-A--AAA--GTA-T-GG-CCT-ATGC-AAG--GTT-AT-GACGA-AAAATAGAG--TC-TTATT--A-TGAG-CATATGA--T-CTTG--A-AGT----CCA-CAATAT-TCTG-----TA-A--GGC--TCG-CA---CAT--TT-----CTAT-GA----ACCCCC
gi|11 : aaaagaatcatctcaaaatctggagagaaaaaaaggagttgttgtaacatgggacatctagctatttgatatagtgttttttgatatctaatacatgtatgatgtggattgaactacaaattccatcaaattaacttcatggaaatggtactagtaaataaatactattgatgtgaaattaattagcatgataaatctgtcatatagaaatcttgccctaattctaaaactgaaacccccattgggccaattgacaccaaccagctaaaaagattattttttccataattgtaactaacatgctcttgcacttctgacatggaaAAGGC---TTTTCA-TCCGAT-CCG----TA----CTACATCAG-ATCCGC-A--TT-CTCTCG--GA-TG-TGGTT--GTG------TTGG----TACC--TTATCCCT-ACAA--CCGTCCT-A-----AA-AT--GT-A-CT--ATGCTT-C--TATC-A-TT-T--TCAC-TCACCA-AGTCTCT-GC-AAA----TG-CC-AATT-A-TA-TTAACTAAACACATTTTATCC-G-TGAAATTGA--A-GAAA-GG------C-GT--AA-A-T---ACGTTT-GATTTCTGA-TTGTTTA--CATC--TAT--C--CTGC-ATGACTT--------G--TTTTTTTTCGC----C---T-ACT-CAG--AGT-AA-GT-G--CGACC-AG-ACA--TCAT----TTAAAT--ATT---------CACCGGTTAAA--CCAAG-ATGA-TG-A-CCA--CAGC--AA-ACACGAAAAAAA-TAGTTA-TG-------------------ATTG--------TT-TC-----TTTTAATCC--AAT---AA-TTGAT-T----T-CA-T-----AGTTCTACTA-C--T-ATGG-CTG-A--GGAAAAGGC---GT-----------CC-TT-GTCTC-CAGG-A---G-CC-A---T----C-AC-CGGA-A------GT-GA--GGTCG-CG-CGAG----AC--TGTGT-AGCCCTAg
gi|12 : TATCCTTCACAC--CCGTCCTTACTAAGAATATAGAA-A-CT-AATGCTT-C--CATC-A-TT-TGTCCAC-TCACC-GAATCTCT-GCCAAA----TT-TA----TTA-TAAATAACGAA-TACATTT-ATCC-G-T-AAAT-GA--G-AAAA-GGAAAAAGC-GTTTAATA-TTTAGCGTTTTTGTA-TTGA-T-TGTTA--CATTAGTA---C--CTGC-ATGG-TT--CT-TCCGTTTTTTTTT-CGC----C---C-TTT-CA--GAGT-AG-AT-G-GGGAC-----GCA--TC------TT-AAT--G-T---------CACCG--T--A--C--AG-ATGATTG-A-C-A--CACC--AA-ACACGAAAA-AA-TA--TA-TG-------------------TATG--------GT-TC------GTTAATCG-AAATAA-AA-GTGAT-T----T-CA-TTATAGGGTC-TACTG-C--T-AT---TTA-A--G--AAAGGCCCAGT-----------CC-TT-GTCTC-CAGGAA---G-TC-CG--TA---C-AC-CGGA-A------GTAGAG-GGTCGCCG-CGt
gi|14 : aggtggagcttaccggnnnnnnnnnnnnnnnnnnnnnnnnnTTC-CGCTATTC---T-ACTTCAG-G-GTGAG-AT-G-GCGACC-AGAGCA--TCCCATCTTTAATT--GTTCGACCCCCGCACCGATTAAA--CCAAG-TGGA-TG-A-C-ATTTA-CCTAA-AC---AGAA-AA-TAGTT--TGT------------------ATTGTAGTTATATC-TCTGATTTTTTAATCCTAGATAAAAA-GTGATATTATAT-CACT-----AGTC-TACTA-C--TAAT-G-CTG-A--G--AAAGGC---GCTTACGGACCCACT-TT-GT-TC-CAGG-ACGTA-TC-CCCATC---A-AC-CGGA-
gi|15 : aaccctcattatataaG-CCC-TTATT--A-TGAA-CATATGA--TACATG--A-AGT----CCA-CAATAT-TTTG-----TA-G--GTC--T-G-CA---CAT--TT-----CTAC-GA----CCCCCCCCCTCC---CC------GTG--TTGATG-A-CGATTT--AC-TGT-CC--------TA-TATCCATATTT-T-CT-ATTT--TTTA-AC-AT----AT-AGG--CA--G-TTGTCAT-CAAATT-CCAGAAATCCT-----TTA-TAAATACT--T-AAAAGC---TTGTC-ATCC-GTACCG----TA----C---ATCAG-ATCTGC-A--TT-CTCTCGT--A-TGGTGGTG--GTG-G-GGGTTGGG-GGTG-CCTTTATCCTTCACA---CCGTCCTTA-----AA-ATAGtaaaacaaagtcgagggtgaggagactcgacgcgccatggagactgttttgtagcc
gi|16 : CCG-TGAAAT-AC--ATAAAA-CG------T-GT--AA-A-TT-AGCGTTTTGATA-CCGA-T-------------------C--CTAC-ATTGCTT--TC-CCCG---TTTTTT-CGC----C---A-ACT-CGG-GAGT-AG-AT-G-AGTACC-TGGACA--TC------TTACAT--GTT---------CGCCG--TAAA--CCAAG-ATGA-TG-A-T-A--CG-C--AG-ACACGACAA-AA-TAGCTA-TG-------------------ATTA--------TT-TC-----TTTTAACCC-AAAT---AA-GTAAA-T----T-CA-C-----TGT-TTGTTG-C--T-AT-G-TTG-A--G--AAA--------------------------TATG-CAAA-A---G-TT-C---TC---C-AC-CGGA-A------GC-GA--G
gi|17 : -AAAA-CG------T-GT--AA-A-TT-GGCGTTTTGATA-CTG------------ATTA---------------TG----------------TTTTTT-CAT----C---C-ACC-CAG-GAGT-AA-AT-T-GGTACC-TGGACA--TC------TTAGAT--ATT---------CACCG--TAAA--CCAAG-ATGA-TG-A-T-A--CA-C--AA-ACACGAAAA-AA-TAGTTA------------------------------------------------AATCC-AAAC---AA-GTGAA-T----C-CA-T-----AGT-TTGTTG-C--T-AT-G-CTG-A--G--TAATGT---GC-----------CC-TT-GTCTC-CAGG-A---G-TC-T---TC---C-AC-CGGA-A------GT-GA--GATCG-CG-CGAGA---A---TGTGT-AGCCCTAactgtagctctattg
gi|18 : TTTTTT-CGC----C---T-ACT-CAG-GAGT-AT-A--A-GCGACC-AGGACA--TC------TTAAAT--GTT---------CACCG--TAAA--CCAAG-ATGA-TG-A-T-A--CA-C--AA-ACACGAAAA-A--TAGTTA-TG-------------------ATTG--------TT-TC-----TTTTAATCC-AAAT---AA-GTGAT-T----T-CA-T-----AGTCT-ACTA-C--T-AT-G-CTA-A--G--AAAGGC---GT-----------CC-TT-GTCTC-CAGG-A---G-TC-C---TC---C-AC-CGGA-A------GT-GA--GGTCG-CG-CGAG----AC--TGTGT-AGCCCTt
gi|2 : ctcgTGCA-AG-TAACTAGTTTAT-GAA-G--TAAG-T-TA-AC----AATA-A-CAGA-AA-----AAA---TGTCCA------AGT-GATA-T-AAATAA--TT-AAATAT---TTTGT-----CATTG-CTATGTTA-A---TTTTCT--AT-AT-TT-C--AGCA---A-GA------ATTTTTTT-T--AAAAAGTC-T-GG-CTTCGTGC-AAGTGGCTCAG-AACGA-AAGA--GTG-CCA-TGATTCAA-TGAG-CATATGA--TACATGTTATAGT----CTA-CACTAT-C--G-----TA-G--GTC------CA---CAT--GT-----CTAGTGA----CCCCTCCC--CC---CC------ATG--TTGATG-A-CAT--C--AC-TGC-CTA-------TA-TATCCATA-AT-T-CT-ATTT--TT-A-AC-ATA---AT-AAG--CA--GATTGCAAT-CAAATT-CCAGGAATCCT-----TTACTAAGTACT----AAAACC---TTTTCA-TCCG-TACCG----TAGCTAC---ATCA--ATCCGC-A--TT-CTCTGGT-AAGTGGTGGTGT-GTT-G-GGG--GGG-GGTACC-TTTATCTACCAC-----CGTCCTTA-----AA--TAGGT-A---TA-----T-C--TCTC-A-TT-C--TCAC-TCACCA-AGTCTC--GC-AAAA---TG-TA-AATT-A-TACTTAAC-AAACA-ATTT-ATCCCG-TGAAAT-GAAGA-AAAA-GG--------GT--AA-A--T-AGCGTTTTGATT-CTGA-T-ATTTA--CATTA-TA---C--CTGCATTGAGTT--AC-CTCG-----TTGT-CGCG---C---T-ACG-CCA-GAGT-AGAAT-G-CTGACC-AGGACA--TC------TTAAAT--GTT---------CACTG--TAAA--CC-AG-AT-A-T--A-C-A--CA-C--AA-ACACGAAAA-AA-TAGTTA--G-------------------AT----------TT-TC------TTTAATCT-AAAT---AA-GTGCT-T----T-CA-T-----AGTC-TA-TA-C--T-AT---CTGAA--A--AAAGGC---TC-----------CC-TT-GTCTC-CAG------A-TC-C---AT---C-AC-ACGA-A-------T-GAT-CGTCG-CG-CGAG----ACTTTGTGT-AG
gi|20 : atatcattgcattatagtagaataacccatgaataatttgtataaatattatatatcaatataagaataaataccccctgtattccttcaattttaaaaattcaaaaacatattttcttatatcaacaatagtctagagtaagactcctgaattatgattcaagttcgaatgttgatgatcagcgaacctttaaatgaaagacatcacttcaaaatctggaaaaaaggatttgttagcatgggatttagcattggataatctttttgattgataaatatatagatgttattaatgatgaagattctaagtataaatctcaaaaatatgaagggtatagtaaaaaaatactattatgtaatataatgtatgcgaaattaatatgtcgttatattagataatcttgcctacattcttaaaatggacataaacccctggcattgacaccactcagtcaaaatagattattgtatcatcatattgcatacataagactcgatgtatggctcctgcttatctctagatgcattgctgacatgaaaaGAT-T----T-CA-T-----AGTCT-ACTG-C--T-AT-G-CTA-A--G--AAAGGC---GT-----------CC-TT-GTCTC-CAGG-A---G-TA-T---TC---C-AC-CTGA-A------GT-GA--GGTCG-CG-CGAG----AC--TGTGT-AGCCCTA
gi|21 : -T-CT-ATTT--TTTA-AC-ATA---AT-ATA--CA--G-TTGTCAT-CAAATT-CTAGGAATCCT-----TTA-TAAGTACT--TAAA
gi|3 : TGCA-AG-TA-CTAGTTATT-GA--G--TAAG-TGTACAC----A-TACA-C-----------GAAAGATGTCCA------AGTGGATTCA-AAA--A--TT-AA---TATTTT-GT-----CAT-A-TTGT-T-A-A---TTTTC---AT-AT-TCAT--GGCA---A-GA------ATTTTTTT-T--AAAA-GTC-T-GG-CCT-ATGC-CAG--GTC-ATTGACGA-AAA-TAG----CC-ATAT---A-TGAG-C-TATGA--TACATG--A-AGT----CCAACAATAT-TCTG-----TA-G--GTC--T-G--A----AT--TT-----CTAT-GA----CCCCCCCC--CC---A-------GTG--T---TGTG-CAA--T--TC-AAT-CTA-------TA-TATCCATA-TT-TTCT-ATTT--TT-A-AC-ATA---AT-A-G--CA--G-T-GTCAT-CAAATT-CCAG--ATCCA-----TT--TAACTATT--TAAAAAGC---TTTTCA-TCCG-TACCG----TA----CTACATCAG---CCGC-A--TT-CTT--GT--A-TGGTGGTG--GTGTG-GGGGGGGG-GGT---CTTTATCCA-CACAC--CCGTTCCTT-----AA-ATAGGTTA-CT-ATTGCTTTC--TATCCA-TT-T--TCACCTCACCA-AGTCGCT-GC-A------TGGTAGAAATTA-TATTTAATAAACCACATTT-ATCC-G-TGAAAT-GA--AGAAAA-AG------C-GT--AA-A-TT-AG-GTTTTGATC-CTGA-T-GTT-A--CATTAG-A---C--CTGC-ATTGTTTGACA-CTCG--TGTTTG--CGC----T---A-ACT-CAG-GAGT-AG-ATTG-GCGACA-GAGACA--TC------TTAAAT--GTT---------CCCTG--TAA----CAAG-AT-A-TGCA-C-A--CA-G--AC-ACACGAAAA-AATTAGTTA-TG-------------------A-TG--------TT-TC-----TTTTAATCA-CAAT---AA-GTCTT-A----T-CA-T-----AGTC-TACTACC--T-AT-G--TG-AC-G--AAAGGC---GT-----------CC-TT-GTCTC-CAG------G-TG-C---AT---C-A--CGGA-A------GT-GA--GGTCG-CG-CG-GG---AC--TGTGT-AGCCTTAgc
gi|4 : attgaagatatccctgtattccttcaatttaataaattcaacatattttttttatcaacaaatgtcttcagagtagatcttgaatttgatcaatttgaagtttgatggaatcaagaaccgtttaaattaaagacatcattcaaatctggagaaaaaaggagtttgtcacaggatcatagctatttgatatcgtttattgattatctaaataccatgtatgtgtgatgtctaatagactatataagtctcatcaaatctactcatgataaggtatagttaaaaaaatactagtattgtgaattaatgagcctaataatctgtcactatagaaacttgccctaattctaatgacagaaccccattgcggcagtgacacccactagtcaaagattatttattgcatttggtaactagatcatttaggtcatgcgaatttgcattctgacatggaaaaTT-GAACGCCTAAG-T-TACACTCTCAATA-AACAGA-AAAAGAAGAAATATGTCCACTAAAAAGTAGATACT-AAA--AAATT-AA---TATCTTTATAACAACAT-AATTGT-TTTTA---TTTTC---ATCAT-TT-C--AGGAGCGA-GATTAATTGTTTTTTTCT--AAA--GCC-TTGG-CCT-ATGCGAAG--GTC-ATTGGCGA-AAA-TAGAGTCCC-TTATT----TGAGGCATATGA--TACATG--A-AGTTCTCCTA-CAATAT-TTTGGTATTTG-G--GTCTTT-GTCAGTTTATTGTT-----CTCA-GATCCGCCCCCTCC--CC---CCA-----GTG--TGAGTG-A-CGA--TTCACTTGT-CCTATACATGTA-TATCCATA-TTGT-CT-ATTT--TTTA-AC-ATA---ATAA-G--CA--G-TTGTCAT-CAAATT-CCAGGAATCCTTTAAATTA-TAAATACT--T-AAAAGC---TTTTC-ATCC-GTACCG----TA----C---ATCAG-ATCCGC-A--TT-CTCTCGT--A-TGGTGGTG--GT------GTT-GG-GGTA-CCTTCATCCTTCACA---CCGTCCTTA-----AA-ATAGGA-A-CT--ATGCTT-C--TATC-A-TT-T--TCAC-TCACCA-AATTTCT-AC--AA----TG-GA-AA-TTA-T-ATTAACTAA--ACATTT-AT-CCG-TGAAAT-GG--A-t
gi|5 : tatacgaagaataatctcctgtattccttcatcaaattcaaaatatttttttatatcaacaaatagtctagatcgagtagattctctgaatttctgatacaagtttgatggaatcaagaactttaaataaagacattcagttcaaaaaatctcggagtgatgtgaaagtttttaccaaaagggagttttgtacaattgggatctttagctagttaatgtgatatcctgttttgtactgattatctaacatacatgtatgatgtatgtctgtatgaatacttaaacctcctcatcaaatctaacttcataaatgggaaaatgggtataggctttaataacataactattaattgccgtgagcttaagttaatgtagccatgataattcgtcatatagaaaaatcttgccctaatttcttaaatgactgaaacccccattgggcgaatttaaatgagacccactcagttcaaaaagatatctgtttttcagtaattatgttaactaggaattcattctaggcttcatgcttgtgcgctatttctgtcaatgcgccaaaaatgcccatataggttctattacacTGCA-AGGTA-CTAGTTATTTGAA-GC-TAAGCT-TACAC----AATA-A-CAGATAA-----AGAAGA-GTCCA------A-TTGATACT-AAA--A--TT-AAATAT----TTAT-----CAT-A-TTGT-T-A-A---TTTTC---AT-AT-T--C--AGTA---A-GAT------TTTTTTT-T--AAA--GTC-T-GG-CCT-AGCC-AAG--GTT-AT-GACGA-AAA-TA-AG-CCC-TTATC--A-TGAG-CATACGA--TACAGG--A-AGT----CCA-CAATAT-C--G-----TACGCCGTC--T-G-CA---CAT--TT-----CTAT-GA----CCCCCCCC--CCTTTCC------AGGGTTGATTC-A-C--------------CC--------TAATATACAT--TT-C-CT-ATTT--TAAACAC-ATA---AT-A-AGCCA--T-TCGTCATTCAGATT-C-AGAAATCAT-----TTA-GAAGTACT---GAAAAGCCCTTTTTCA-TCC--TACCGATACTA----C---ATCAG-ATCCGC-A--TT-CTCTCGT-GG-TGGTGGTG---TG-GTGGGCGGGA-GGTACCTTATATCCTTCACAC--CGGCCTTAA-----AA-ATAGGT-A-CT--ATGCTT-TCTTATC-A-TTGT--TCACCTCACCAAGATCTCT-AC-AAAATGCTA-TA-AATTTA---ATTAAT--AACACATTTCATCACGCTGAAAT-GA--A-GAAA-GG------C-GT--AA-AATT-AGCG-TTTGATT-CTGATT-GCTTA--CATTAGTA---C--CTGC-AT-GTTT--AC-CTCG--TTTTTTT-CGC----C---CAACT-CA--GAG--AG-AT-GTGCGACC-AGGACA--TCT-----TTAAAT--GTT---------CACCG--TAAA--CCAA--ATGA-TG-ACC-A--TA-C--AA-ACACGAAAA-AATTAGTTAGTG-------------------TTTG--------CT-TC-------TGAATCC-AAAT---AA-GTGAT-T----T-CA-T-----AGTC-TACTA-C--T-AT-GCCTG-A--G--AAAGG----GT-----------CCATT-G-CTC-CAGG-A---G-TC-CAA-T----C-AC-CGCA-A-------T-GAGGGGTCG-CG-CGCAA---AC--TGTGTCAGCCCgcattgaaaatttgtatttaatttcattg
gi|6 : tgttttattggatcatcttagaatacatgtatgatgttgctgatgtctgaatgaagtataattcatcaacttaacttcatggaaaggtatagttaaaacaaacttattagtgaattgaatgtagccatgataaagctgctcatatagaaaatctggccctcaattcttaaatgactgaaacccccaacttgggcgaattgacaccactcagtcagaacattttcataattgtctacgctatgactaatttacgctcatgctttgcattccgacatggaaaaaaTGCA-AG-TA-CTAGTTAT--GAA-G--TTAG-T-TACAC----AATA-A-CAGA-AA-----GAAAGATGTTCA------AGTTGATACT---------TT-AAATATATTTTTAT-----CAT-A-TTGT-TTA-A---ATTTC---AT-AT-TT-C--GGTA---T-GAT-----ATTTTTT------AA--GTCCT-GG-CCT-AT-C-ATG--GTT-AT-G-CGA-AAAATGGAG-CCC-TTATT--A-TGAA-CATATGA--TACATG--A-AGT----CCA--AATAT-GTTG-----TA-GA-GTC--TTG-CA---CAT--TT-----CTAAAGA----CCCCCCCT--CC---CC------GTG--TGAATG-A-CGA--T--AC-TGT-CC--------TA-TATCCATA-TT---CT-ATTT--TTTA-AC-ATA----T-G-G--CA--G-TTGTCAT-CAAATT-CCAGAAATCCT-----TTA-TAAATACT--TAAGAAGC---TTGTCAATCCGGTACCG----TA----C---ATCA--ATCTGC-AATCT-CTCTCGT-AA-TGGTGGTG--GTG-G-GGGTTGGGTGGTGCCCTTTATCCTTCACAC--CCGTCCTTA-----AA-ATAGGA-AACTTAACGCTT-C--TATC-A-TT-T--TCAC-TCACCAGAATCTCTTGC-AAA----TG-TA-AATTTAATAATTAACGAAACACAATT-ATCCCG-TCAA-T-GA--A-AAAA-GG------C-GT--AA-A-TT-AGCGTTTTGATG-CTGA-T-GTTTAAGCATTAGTAAAGC--CT-C-TTGGTTT--CC-CCCG--TTTTTTT-CGC----C---T-ACT-CAGTGAGT-AG-AT-G-GCGACCCAGGACA--TC------TTAAATTTGTT---------AACCG--TAAA--CCAAG-ATGA-TG-A-C-A--CA-CT-AA-ACACGAAAA-AA-T-GTTA-TG-------------------ATTG--------TT-TC-----TTTTAATCC-AAAT---AC-GTGAT-T----T-CA-T-----AGTCTTACTG-C--T-ATGG-CTA-A--G--AAAGGC---GT-----------CC-TTGGTCTC-CA-G-A---G-TTAT---TC---CAAC-CGGA-A------GT-GA--GGTCG-CGCCGAGA---AC--TGTGT-AGCCCTA
gi|7 : TGCA-AG-TA-CTAGTTAT--GAA-G--TTAG-T-TACAC----AATA-A-CAGA-AA-----GAAAGATGTTCA------AGTTGATACT---------TT-AAATATATTTTTAT-----CAT-A-TTGT-TTA-A---ATTTC---AT-AT-TT-C--GGTA---T-GAT-----ATTTTTT------AA--GTCCT-GG-CCT-AT-C-ATG--GTT-AT-G-CGA-AAAATGGAG-CCC-TTATT--A-TGAA-CATATGA--TACATG--A-AGT----CCA--AATAT-GTTG-----TA-GA-GTC--TTG-CA---CAT--TT-----CTAAAGA----CCCCCCCT--CC---CC------GTG--TGAATG-A-CGA--T--AC-TGT-CC--------TA-TATCCATA-TT---CT-ATTT--TTTA-AC-ATA----T-G-G--CA--G-TTGTCAT-CAAATT-CCAGAAATCCT-----TTA-TAAATACT--TAAGAAGC---TTGTCAATCCGGTACCG----TA----C---ATCA--ATCTGC-AATCT-CTCTCGT-AA-TGGTGGTG--GTG-G-GGGTTGGGTGGTGCCCTTTATCCTTCACAC--CCGTCCTTA-----AA-ATAGGA-AACTTAACGCTT-C--TATC-A-TT-T--TCAC-TCACCAGAATCTCTTGC-AAA----TG-TA-AATTTAATAATTAACGAAACACAATT-ATCCCG-TCAA-T-GA--A-AAAA-GG------C-GT--AA-A-TT-AGCGTTTTGATG-CTGA-T-GTTTAAGCATTAGTAAAGC--CT-C-TTGGTTT--CC-CCCG--TTTTTTT-CGC----C---T-ACT-CAGTGAGT-AG-AT-G-GCGACCCAGGACA--TC------TTAAATTTGTT---------AACCG--TAAA--CCAAG-ATGA-TG-A-C-A--CA-CT-AA-ACACGAAAA-AA-T-GTTA-TG-------------------ATTG--------TT-TC-----TTTTAATCC-AAAT---AC-GTGAT-T----T-CA-T-----AGTCTTACTG-C--T-ATGG-CTA-A--G--AAAGGC---GT-----------CC-TTGGTCTC-CA-G-A---G-TTAT---TC---CAAC-CGGA-A------GT-GA--GGTCG-CGCCGAGA---AC--TGTGT-AGCCCTA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATACAACAGACTCGAAATGCTGATCAATATCTATCATAATCTGGAAAGAAATATAAATTAGATATATGTATAGTATTATCTATCAATAATTTAGTATGAAAAAGAAATTGAGACACGGCAATTGAAACTTGTATTTTATTTTACATTAACTTGATCTGGATCTTATAACATGAGATACTGATAACAATGTTTTTTCCGACCTAAAAATATTTAGTGCGTGTTTCAAAATTAACAGATTTGAAGAAGAAAAGCAGTATTCCTATCTGTCCTGGTATGTTACAGGAATTCAATTTAATCCAGTGTCACTTTTCAACAATCCAAAACAACCATCACAGCAGTTTGAGCCTCAGTTATCTTGGGGGGAAAACCTCCTGCAATTTAAAAAAATAAAATTATTGTTGTGCACGAAATAATTCTTTGCATATGTAAGTGGAACTGCAATAATTGCATAGATATGTATCTATACTGAAGAATAATCTCTTGTATTTCCTTCCAATTTTGAAATAAATTCAAACATATTTTTTTTTATAATCAACAAATAGTCCTAGAAGTAGAGTCTCTGAATTTTGATAACCAAAGTTTGGATGGATCAAAGAAACTTTAAATAAGACATCAAATTCACAATCTGGAAGAAAGGATGTTTGACATGATCTAGCTAATTTGATATCTGTTTTATTGATGTCTAAATACATGTATGAATGAATATTAAATTCATGCAAATTATTTTCAATGGAAAGGGTATAGTAAAAAGAATACTATTATGTATTG
Unaligned ( gi|9 ): ATACAACAGACTCGAAATGCTGATCAATATCTATCATAATCTGGAAAGAAATATAAATTAGATATATGTATAGTATTATCTATCAATAATTTAGTATGAAAAAGAAATTGAGACACGGCAATTGAAACTTGTATTTTATTTTACATTAACTTGATCTGGATCTTATAACATGAGATACTGATAACAATGTTTTTTCCGACCTAAAAATATTTAGTGCGTGTTTCAAAATTAACAGATTTGAAGAAGAAAAGCAGTATTCCTATCTGTCCTGGTATGTTACAGGAATTCAATTTAATCCAGTGTCACTTTTCAACAATCCAAAACAACCATCACAGCAGTTTGAGCCTCAGTTATCTTGGGGGGAAAACCTCCTGCAATTTAAAAAAATAAAATTATTGTTGTGCACGAAATAATTCTTTGCATATGTAAGTGGAACTGCAATAATTGCATAGATATGTATCTATACTGAAGAATAATCTCTTGTATTTCCTTCCAATTTTGAAATAAATTCAAACATATTTTTTTTTATAATCAACAAATAGTCCTAGAAGTAGAGTCTCTGAATTTTGATAACCAAAGTTTGGATGGATCAAAGAAACTTTAAATAAGACATCAAATTCACAATCTGGAAGAAAGGATGTTTGACATGATCTAGCTAATTTGATATCTGTTTTATTGATGTCTAAATACATGTATGAATGAATATTAAATTCATGCAAATTATTTTCAATGGAAAGGGTATAGTAAAAAGAATACTATTATGTATTG
Unaligned ( gi|13 ): TCGTTGCATCATGTAAGTGTGAAACTGAAGAAAATTGTATAGAATAGTTATGATCTAGTATGAAGAATAATCAAACTGTATTCCTTTCAATTTTAAACATATTTTTTATATTTATCAAAGCAAATATAGTCTAGAAGATCTCTGAATTCTGATACAAGTTTGATGGATCAAGAACCTTTAAATAAGACACTCAGTCAAAATCTGGAGGGAAAAGAAAGACGATATTTTACAGTGGGGATCTAGCTCTGAGTGTGGATATCTGTTTTATTGTTAATCTAAATACATGTATGATGGGATGAATATGTAAATTCATCAAATTAACTTCATGGAA
Unaligned ( gi|19 ): TATATGAAAATAATCTGCCTGTATTCCTTCAATTTTAATATTCAAAATACTTTTATCATCAAAACAATAGTCCTAAAAGCGGTTCTCTGAAGTTCTGAATAAAAGTTGAT