lowQualScore : 11111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111 11111111111111111111111111111111111111111111111 11111111111111111111111111111
lowQualScore : 222 44444 1 666 22222 3333 1 4444444 11 1 11 33333 22 22 2 444444 444444444 2 1 33333333333 1 1 2 22222222222222222222222222 2 2 11 2 22 222 11 2 888888888888888888 2 333 2 22 222 1 4444444 1 111 2222 77777777777777777777 11 1111 444444444444444444444444 222 22222222 2 11 2222 1 3333333333333 22 111 1 11 4 22 11 1 1 55555555555555 11 11 11 44444444 222 1 1 1 11 444 1 1 1 3333333333333333333333333333333333333333333333333333333333333333 111 11 3333333 11111111111111111111111111111 333 22222 11 1111 333333333 1 3333333333 1 55555555555555555555555555555555555555555555555 333333333 2222222 11 33 1 1111 11 1 1 1 1 1 11 44444444444444 2222222 111 1 1 4444444444 44 1 33 444444444444444444444444444444444 1 4444 1 1 1 1 1 222 1 1111 333333 111 1 1111 11 1111111 22222 11 11 11 55555555555 3333333 11 1 33333333 11 66666666666666666666666 1 66666 3 1 1 1 1 1 1 1 2 22222 1 1 1 1 222 222222 4444444444444444444444 11 222 11 22 1 11 1 1 1 11 22 44 1111 1 11 44 111111 11 11 1 11 11111111111111111111111111111 1 11 111 4 1 5555555555 1 2222 33333333 11 111 1 333333333333333 22222 1 222 1
lowQualScore : 1 333 22222 3 77 3 7 111 7 22222 0 3333 3 8888888 4 88 2 44 7 7 33333 77 77 0 55 000000 555555555 0 3 5 77777777777 4 5 5 0 4 66666666666666666666666666 0 4 0 88 0 77 555 55 2 0 000000000000000000 2 0 000 0 44 666 5 3 3333333 66 3 777 7777 11111111111111111111 33 9999 3 6 222222222222222222222222 5 555 7 1 55555555 6 6 3 7 00 99 0000 5 5555555555555 6 22 222 0 33 3 0 33 33 0 0 4 3 2 33333333333333 0 8 11 44 11 2 8 44444444 333 8 8 3 0 5 8 8 5 8 5 8 6 8 0 0 2 2 33 333 0 8 0 2 3 0 2 0 9 1111111111111111111111111111111111111111111111111111111111111111 444 66 8 11 3 0000000 777 33333333333333333333333333333 6 777 00000 11 88 1111 8 8 8 8 8 222222222 0 2222222222 2 0 3 44444444444444444444444444444444444444444444444 444444444 8 6666666 4 99 11 2 0 3 2 2 3 5555 33 0 0 0 0 0 66 2 55555555555555 7777777 6 111 1 7 6 3 6 5555555555 8 55 88 3 11 333333333333333333333333333333333 0 3 0000 3 3 3 3 3 999 3 7 3 0000 6 3 1 33 888888 444 0 6 3 4444 1 99 1 8888888 8 1 0 00000 8 11 8 8 8 11 33 99999999999 3 2222222 33 0 66666666 33 88888888888888888888888 0 22222 2 0 3 0 0 0 0 4 0 3 3 0 3 9 3 0 7 2 66666 0 2 0 0 0 666 6 0 3 6 000000 6 1111111111111111111111 88 6 666 33 3 9 0 22 0 33 3 0 3 0 0 22 33 22 6666 3 3 5 88 5 00 0 999999 3 8 11 11 1 6 8 0 11 55555555555555555555555555555 8 8 0 0 11 111 0 0 7 2222222222 1 2 0 2 4 7777 11111111 33 666 0 999999999999999 1 0 1 55555 0 222 3
lowQualScore : . ... ..... . .. . . ... . ..... . .... . ....... . .. . .. . . ..... .. .. . .. ...... ......... . . . ........... . . . . . .......................... . . . .. . .. ... .. . . .................. . . ... . .. ... . . ....... .. . ... .... .................... .. .... . . ........................ . ... . . ........ . . . . .. .. .... . ............. . .. ... . .. . . .. .. . . . . . .............. . . .. .. .. . . ........ ... . . . . . . . . . . . . . . . . . .. ... . . . . . . . . . ................................................................ ... .. . .. . ....... ... ............................. . ... ..... .. .. .... . . . . . ......... . .......... . . . ............................................... ......... . ....... . .. .. . . . . . . .... .. . . . . . .. . .............. ....... . ... . . . . . .......... . .. .. . .. ................................. . . .... . . . . . ... . . . .... . . . .. ...... ... . . . .... . .. . ....... . . . ..... . .. . . . .. .. ........... . ....... .. . ........ .. ....................... . ..... . . . . . . . . . . . . . . . . . . ..... . . . . . ... . . . . ...... . ...................... .. . ... .. . . . .. . .. . . . . . .. .. .. .... . . . .. . .. . ...... . . .. .. . . . . .. ............................. . . . . .. ... . . . .......... . . . . . .... ........ .. ... . ............... . . . ..... . ... .
lowQualScore : 0 333 77777 7 77 3 7 777 3 33333 7 0000 3 0000000 0 33 3 77 7 3 33333 55 55 0 55 000000 000000000 0 0 5 00000000000 0 5 0 0 0 55555555555555555555555555 0 0 0 00 0 55 555 55 5 0 000000000000000000 5 0 000 0 00 555 0 0 5555555 00 3 555 0000 00000000000000000000 88 2222 2 5 111111111111111111111111 8 222 3 7 00000000 7 7 3 3 33 22 2222 0 8888888888888 7 00 000 0 00 2 0 22 88 0 0 0 2 5 00000000000000 8 0 00 66 00 2 0 44444444 888 0 2 8 6 0 0 0 0 0 6 0 0 0 8 0 5 5 88 888 8 8 0 5 2 0 0 0 2 5555555555555555555555555555555555555555555555555555555555555555 000 00 2 00 2 6666666 222 22222222222222222222222222222 7 222 88888 00 88 2222 0 0 0 0 0 000000000 5 2222222222 5 0 2 00000000000000000000000000000000000000000000000 222222222 0 0000000 2 00 00 5 0 2 5 5 2 8888 88 0 0 0 0 0 00 5 22222222222222 5555555 0 000 2 3 0 3 7 3333333333 3 00 33 3 00 333333333333333333333333333333333 7 3 3333 3 3 3 3 3 333 3 3 7 7777 7 7 0 55 888888 000 8 0 2 2222 8 00 0 0000000 0 0 8 00000 0 00 0 0 0 00 88 55555555555 2 5555555 88 0 22222222 22 22222222222222222222222 0 55555 5 0 0 0 0 0 0 0 8 2 2 0 2 2 0 0 8 5 00000 0 5 0 0 0 000 5 2 8 7 000000 7 3333333333333333333333 88 7 222 88 2 0 8 22 0 88 2 0 0 0 0 55 88 22 8888 2 2 5 22 0 66 8 222222 8 0 22 00 4 0 0 6 00 22222222222222222222222222222 0 0 8 2 00 000 0 0 0 2222222222 2 5 0 5 0 0000 55555555 88 888 0 000000000000000 2 2 2 00000 0 000 3
consensus : ACCCAAAAGTGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCGTTATNCTATACTTAGAATTAGTTTT-ATCTTGCTCGTTG---ATAAGTTCTATTACATT-AATGATATGCAGNAAAT-AAGTATGAT-----TATATGANCAATGATTTCATTATA--ATGAAATAAGNAATATGAGTA-----TACACAACGATGCATGGTTTTGGATGGCANNCAAGACAAGAAAATTACCAACNAACAAGGCTCNATGTTCACCTTAAGTGCTCTCCTCNTCCAACGTGTTGAGACATTCTAAGGGCANCGTCTGGTCTTCTTACGTGGCCTTCCACTTCTTTGGACATCCNTGTAGAACCCTCTGCCTTTTCAAGAGGACCNNTTNCACATGCTAGGCTGTAACNCTGCTTTGGGACAACTTTNGGTTAAACGATAATTTCGGGCNTTGTGTTCTTCGTGNTTATGTCTTNNCA-CGA---CACC-T--TTTGC-CG-G-CCANC-CA--CGCTTCACCTG--TTCGN--NGGTCAGNCC-GGT--CT-TCAT-C-CC-----AAGCTCGTCTACTTCTGTCGTTC-------NGTGGGG-TAGGGG-TTGTC-CGGG--TG-GG-TCTGGTACCA----------A--T-GATTTAG-AAATATCACGAGAC-TT-NGAGGCCATGGGCTGGAGA--GCA-G-ACGTNTCCCTCTTNATGGT-CTC---C-AAACTTAATTGGATGCTGGTTTC-C--AG-TGA--TGGACAG-GGT----GTTTGAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGC-GGGT-CAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTG-TTAAGTACATTG-----GTTCCATGC-CATGAA-A-----TTCTTGCTTTCTT-AT-C-C------------TAT-CTTTCT---CTTGAGGGTAT--TGCTTTGT-TGAAATTTCCTCTGGTGT-GTTA-CAA-A-TATTTCC-TCTCCTCT-AATAG-GACTGTTAGTCACTA----AGGC--TA-AAATGGGATGAG-T-GA-TAGA-GT-T-GAAGGC-AGTTTC---------ACGTCGAGT--G---G-AATCNAAC-TCGTGAAGCACTG--------------------------G-----------------A--AGCAG--GT----TGGGC-AGACGTTGGGAGAA-------ACGCTATGATCACTGGGG--GAGGCTGT-AGGCAACACA-GAAGCAGGTGGGCAGGCA-TCGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ANATATTTC-TCTG-T-GA---AAGCGNCAA-GCATCTTC-T-GCGGTAA-TTCC-ACTCA-TTT------ACTGGCCTGTTTG-AGGATGTCCAC-ACCACT-GTCCACTTGCAATGACGG-CTT-G---GTCGGAG--TTAAT------CGCAGAAT-CCACTTC--CTG-TTCAGAGG-AGGCACTGCTG-CCGCTG-AAGCTG-AGATGAGAACT-GGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCA-TGATGACATTCA-GTCGGGTGTATCGGTGAGAAACGGAGCAG-----CGTCTGCTG---TGAGACTCG-CTGGA--CGAGGAAGAA-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGA--GGA------AAAG-GCTGGTTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGGC-AAA-TACACCTNTNGGACTTTGAAGCATATTGGGAATTNTGGA-GAG-AAGGCCC-GGAATTTGGC-AGANTCTGAGAATAGGCTCTGTAGTTGGG-CTGTGTTGCTNG-AATG-ANTTTTGGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTTA-TTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGG-AGGGA-AGGC-TTGA-T-GAAN-GCAAT-CCT-CTGCAAGG-ACATCCT--GGAGCTGGCTGTAAATGGGATTTCTCTGCATTTGGTT-GAAGAACTGG-AAGGA--GGAAGGC-TTNATGGTTGTT-TTGT-TGTTCTG-TGG--TGGAATGTGGGTGTTTTGACTGGTCTGTTTGGGAAAGC-GATGGCTGGAGGT-GAGAAGATATTC--T--CCTCTATCT-GTN-ATCTGTGGATAA--GCAGGGAAA-CTC-TGTCC-GTAG----TCGCTGGGGCTGAACTT-T------GGT-AA-GTGCTGTACATCTGAGTGGC--AGG-A-TACTGCTGCT-GCGTG--TA------CTTCT-GATNTGTNCTGN--AGAA-GCCTG--GGTA--ACTN--TGTT-GGA--T--G---TGTCC-GTTGCCGCGG-----TG-AAGAAA--NTTG-TCTTCCATTCT
Reference ( gi|1 ) : ACCCAAAAATGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATGTTATACTTAGAATTAGTTTT-ATCTTGCTCTTTGGTAATAAGTTCTATTATATTAAATGGTATGACGTAAAT-AAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGTAATATGAGTA-----TATA--ATGATGCATGGTTT--GAT-GCAGTC-A-AC-AGAAAA--AC--ACAAACAAG-CTCAATGTTCAC-TT-AAT--TATCCTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGT-T---------GCCT--C---TCTTTG-ACATCCTTG-AGAACTCTCTG-CTTTT--AGA-GACCATTTCCACATGCT-GGCTGT---CCTG----GG---AACTTTGGAT-AAA-G-TAATT-CGGA-TTTGT-TTCTTCGTGTT---GT--TTTCA-CGA---CACC-T--TTTGC-C--G-CCAGCACAG-CGCTTCACCTG--TTCAG--TGGTCAGGCC-GGT--TT-TCAT-C-CC-----AAGCTCTTC--CTTCTGTTGTTC-------TGTGGGG-TAGGGGGTTGTC-CAGG--TG-GG-TCTCGTACCA----------A--T-GATTTAG--AATATCACGAGAC-TT-TGAGGCC-TGGCTTGGAGA--GCA-G-ACATTTCCCTCTTCAT--T-CTC---T-ATACTTAATTGGATGCTGGTTTC-C--AG-AGA--TAGACAG-GGT----G-T-GAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGC-GG-T-CAGTCCTGACAGCCT-CACCAGCTCGT--CTAC--CGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAGTTG-TTAAGTACATTG-TGAAGTTCCATGCACATGAA-A-----TTCTTGCTTTCTTCATCC-C------------TAT-CTTTCT---CTTAAGGGGAT--TGCTTTGT-TGAAATTTCGTTTGGTGT-GTTAGCAA-AATATTTCC-TCTCCTCT-AATAG-GACTGTTTGTCACTA----AGGC--TA-AAATGGGATGAG-T-GA-TAGA-GT-T-GAAGGC-AGTTTC---------ATGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTG--------------------------G-----------------A--AGCAG--GT----TGGGC-AGACGTTGGAAGAA-------ACGCTATGATCACTGGGG--GAGGCTGTTAGGCAACACA-GAAGCAGGTGGGCAGACA-TTGG--GAGAAA-CAC-TATG-ATCACTG-GG-GA-ACATATTTT-TCTG-T-GA---AAGCATCAA-GCATCCTC-T-GCAGTAAATTCC-ACTCAATTT------ACTGGCCTGATT--AGGATATCCAC-ACCACTTGTCCACTTGCAATGACAGGCTT-G---GTTGAAG--TTAAT------TGCAGGAT-CCACT-C--CTG-TTCAGAGG-AGGCACTGCTG-CCACTG-AAGCTG-AGATGAGAACTTGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATTGATGAGAAATGGAGCA------CGTCTGCTG---TGAGACTCG-CTGGA--TGAGAAAGA--TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGA--GGA------AA---GCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCA-G--AAA-TACACC-AT--GACTTTGAAGCATATTGGG-ATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATGAAGTTTTGGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTTATTTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGG-AGAGG-AGGC-TTGA-T-GAACTGCAATTCCT-CTGCAAGGGACATCCT--GGAGCTTGCTGTAAATGGGATTTCTCTGCATTTGGTT-AAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTG-TGG--TGGAATGTAAGTGTTTTGACTGGTCTGTTTGGGAAAGT-TATGGGTGGAGGTTGAGAAGGTATTC--T--CCTCTATCT-GTG-ATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCT-GTAG----TTTTTGAGGC---------------GGT-AA-GTGCTGTACATCTGATTGGC--AGG-A-TACTG-TGCT-GCATGT-TA------CTTCT-GATCTGTACTAG--AGAAGGCCT---GGTA--ACTA--TGTT-GGA--T--G---TGT-T-GTTGCCATGA-----TG-AAGAAA--CTTG-TCTTCCATTCTCCAG
gi|16 : ACCCAAAAATGGAATGAAA---GAGGAA-G---AAATAACCGAAGAAGCATTATGTTATACTTAGAATTAGTTTT-ATCTTGCTCTTTGG---TAAGTTCTATTATATTAAATGGTATGCAGTAAAT-AAGTATGATAATGATATATGATCAATGATTTCAATATATGATAAAAT-AGTAAT-TGAGTA-----
gi|15 : aaaacAAAGTGGAATGAAATGAAAGGAAAATTAAAAAAATCCAAGAAACGACATTCAACATTTAGAATTACTTTTTATCTTACTTGTTG---ATAAATTCTTTTACA---AATGAGATG-CAAAAATTCAGTATGAT------ACATGAGCACTGATTTGATTGTA--ATGAATTA-GAAATATGAGTA-----TATACAATAATACATGGTTT--GAT-GCATGC-AGAT-AGAA
gi|2 : AAGTGGAATTTAA---GGGGAAA-----AATAACCAAAGAAGAATTATCCTATACTTAAAATTAGTTTT-ATCTTGCTCATTG---ATAAGTTCTA--AC-TTTAATGATGTGCAGGAAAT-AAGTATGA------TATATGACCAATGATTTCATTATG--AT-AAATAAGGAATATGAGTATAAGGTACA--ACGATGCATGGTTTTGGATGGCAGTCAA-ACAAGAAAATTACCAACCAACAAG-TTCAATG-TCAC-TTAAAT--TCTCCTCTTCCAACATGTTGAGACATTCTAAGGGCATCATCTAGTCT---------GCCTTCC---TCTTTG-ACATCCTTG-AGAACTCTCTGCCTTTT--AGAGGACCTATTCCACATGCTAGGCTGTAACTCTG----GGGACAACTTTTGGT-AAA-GATAATT-CGGG-ATTATGTTCTTCGTGGT---GT--TGGCACCGACTTCATC-TTATTTGCACAAG-CCAGC-----CGC-TCACCTGCTTCCAG--TGGTCAAACC--GT--CT-TCATGCGCC-----AA-CTCTTT--TTTCTGCTCTTC-------AGTAGGG-TA-TGGGTTTTCGCAAGATTT-GC-TTTGGTACCA----------ACTT-GCTTTAGGAAATAT-ACAACAT-TTGGGAGGCCATGGGCTGGAAAAGGCA-GAACGTATCCTTATTAATGGT-CTT---C-A-ATTTAATTGGATGCTGGTTTCGC--TG-TGACTTGGACAG-GGT----ATT-GAAA-CACCG-CACTCTTTTG-TTGGCCAAT-CCACT-TCTTCACTTGTTTGCGGG-T-CAGTCCTGACAGCCTCCACCAGCTCGTGCCTACTTCGGTGTCGGTGGGATAATGGGTACTGGGTGTGGCTCTGGTATCCAATTG-TT-AGTACATTG-----GTCTCAT-C--------------------CTCTCTT------------------------TTTCT---CTGA--GGTAT--TGCTTGGT-TG-GATGTCCTCTGGTGT-----------------------------AATAG-GACTG--AGTCACTG----TGGC--TATAAATGGGGTGAATT-GA-TAAA-GT-TGGAAGGC-AATTTC---------ATGTTGAGC--GTAAGTAATCGAACATGGTGAAGCACTGGGGCTGGATAGCTGTAGTGCAACATAG-----------------A--AGCAG--G-----TGGGC-AGACTTTGGGAGAA-------ACACTATGATCACTGGGG--AAAGCTG-TAGGCAACACACGAAGCAGGTGGGCAGGCACTTGG--GAGAAA-CAC-TATGAATCACTG-GGAGG-AAATATTTCAACTG--------AAGCAAC-A-GCATCTTT-TCGCGGT-AATTCCAACTCATTCTTCCCCCACTGGCCTGTTTGAAGGA-GTCCACAACCAC-TGTCCACTTGCAATGACGGACCTAG---GTCG-TGTCTTAAT------CGCAGAATGCCACT-TCACTGTTTCAGAGGAAGGCACTGCTGCCCACTGAAAGGTGAAGATGAGAA--TGGTGGGAGAAATGGTTGGGTGATTTCTGTTTC-------AA-----------------GTCAGGTGTATCAGTGAGAAAC--AGCAG-----CATCTGGTGACTTGAG-CTTGACCG---------AAGA--TGTCAGA--GGAGAAAGTGGAATCAGAGCGAAGATGC-----TATGGAGT--G-GCTCCA-TATT--GTTGAAGGGC------AAGAGGTTGGTTATATAA-CC-------TGAG--GAAAAC--------ATGA--TTGA---------------TGCA-GCAAGA-TACATC-TTTGGATGTTGAAG-ATATTGGA-ATTGTAGA-GAGAAAGGCCCAGGAATTTGGCAAGATTCTGAGAGCAGGCTCTGT-GTTGGG-TTGTG-TGTTGG-GATG-ACTTTTGTG--GGATCTGG-AATTT-TGCTGGGAAGCAGACCGCTGTTGTATCCAATTGTTAATTGTTATCATGGGTCACAGTCTGGGAT---CAGGGGTGGAAGTGGAAGGC-TTGATT-GAAGGCCAATGTCT-CTGCca
gi|7 : agaacacct--AC--A-AAACAAGGCTTCATGTTCACCTT-AGTGCTTTCCTCATCCAACGTAT-GA-ACATTC-AAGGACAATGT--GGT-TTCTTACGTGGCTT--CACTTCTTTGGATATCCATGTAGA--CCTCTG-CTTTTCAAGA-G-CCACTTACACATGCT-GGCT-T---ACTGCTTTGG---AACTTTGGATTAAACG-TAATTTCGGACTTTGT-T-CTTC-TGTTTATGTCTTTTCA-CGA---CACC----TTTGCTC--G-C--GCCCAGACGTCTCACCTG--TTCAGTTTGG-CAGGCC-GGT--TTCTAAT-T-CCTTCATATGCTCAT---CTTCTGTGATTCCTCGCTTTGTGGGGATGGAGTGTTGTC---AG--TG-GGATCT-GCACCAGCTTTACCACA--TAGATTTAGCAAGTATC-CGAGAC-TT-TG-GGCCATGGC-TGGAGA--GCACG-ACATTGTCCTC-TCAT--TGCTCCGTT-AAACTTAAGTTGATGCTGGTTTC-CCAAGCAGA--TAGA-AG-GGT----GTT-GAAA-CACCGCCGCCTTTTTGTTTTG-C-ATGCCACTCTGTTCAC-TGTTTGC-GG-T-CAGTCTTGACAGCCctgggtaagggg
gi|4 : aattCA-CCG---CACCCT--TTTGT-TG-G-CCATC-CAC-TTCTTCACTTG--TTTGC--GGGTCAGTCC-TGA--CA-GCCT-C-AC-----CAGCTCGTCTACTTC-GTCG-TC-------GGTGGCA-TATGGG--TA-C-TGGG--TGTGGCTCTGGTACCA----------G--T-TGTTAAG--TACATgt
gi|9 : tcatcccaagctcttccttctgttgttctgtggggtaggggttgtccaggtgggtctcgtaccaatgatttagaatatcacgagactttgaggccatgggctggagagcagacatttccctcttcattctcttaaacttaattggatgctggtttccagagatagacagggtgttgaaa---CACC-T--TTTGT-T--GGCCATCAC---TTCTTCACTTG--TTTGC--GGGTCAGTCCTGATAGTC-TCAC-C---------AGCTCGTCTACTTC-GCCGC-C-------GGTGGGA-TATGGG--TA-C-TGGG--TGTGGCTCTGGTACCA----------A--T-TGTTTAtggtgaagtccatgcacatgaaattcttgctttcttcatcctctatctttctcttaaggggattgctttgttgaatttcgtttggtgtgttagcaaatatttcctctcctctaataggactgttgtcactaaggctaaaatgggatgagttgatagagttgaaggcagtttcatgtcgagtggaatcgaactcgtgaagcactgaagcaggtgggcagacgttggaagaaacgctatgatcactgggggaggctgtaggcaacacagaagcaggtgggccattgggagaaacactatgatcactgggggacatatttctctgatgaaagcacagcatcttctgcagtaattccactcatttactggcctgattgaggatatccacaccactgtccacttgcaatgacagcttgttagttgaagttaattgcaggatccacttcctgttcagaggaggcactgctgccactgaagctgagatgagaactggtgggggaaatggttggtgatttctgtttctgtgatgaagcactgatgacattcacgtcgggtgtattgatgagaaatggagcacgtctgctgtgagactcgctggatgagaaagatgtctgagaagtggatcctgaggaagatactatgggtggtccatattgttgaggaaaaggctgattacataatcctgaggaaacatgatttgatgcaggaaatacacctatggactttgaagcatattgggaattttggagagaaggcccggaatttggcagaatctgagaataggctctgtagttaggctgtgttgttgaatgagttttgtggatctggaatttctgctgggaagaggcgctgttgtatccattgttattgtagtcgtgggttatagtctggatgagggtggaaggaaggcttgattgactgcaatcctctgc
gi|4 : ctattgttctgtgaggtaggggttgtccagatgagtttggtatcactgatttagaacatcggcgacattggaggccatgggctggaaagcagacgtatccttcttaatggtcttcaatttaattggatgctggtttccagtgattgacaaaggtattgaaacacccg-TCAT-C-CC-----AAGCTCTTC--CTTCTGTTGTTC-------TGTGGGG-TAGGGG-TTGTC-CAGG--TG-GG-TCTCGTACCA----------A--T-GATTTAG--AATATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACATTTCCCTCTTCAT--T-CTC---TTAAACTTAATTGGATGCTGGTTTC-C--AG-AGA--TAGACAG-GGT----G-TTGAAAC-ACCG-CACCCTTTTGTT-GGCC-AT-CCACT-TCTTCACTTGTTTGC-GGGT-CAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGCAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAGTTG-TTAAGTACATTGGTGAAGT-CCATGCACATGAA-A-----TTCTTGCTTTCTTCATCCTC------------TAT-CTTTCT---CTTAAGGGGAT--TGCTTTGT-TGAA-TTTCGTTTGGTGT-GTTAGCAA-A-TATTTCC-TCTCCTCT-AATAG-GACTGTT-GTCACTA----AGGC--TA-AAATGGGATGAG-TTGA-TAGA-GT-T-GAAGGC-AGTTTC---------ATGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTG--------------------------------------------A--AGCAG--GT-----GGGC-AGACGTTGGAAGAA-------ACGCTATGATCACTGGGG--GAGGCTGT-AGGCAACACA-GAAGCAGGTGGGC---CA-TTGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TCTGAT-GA---AAGCAC--A-GCATCTTC-T-GCAGTAA-TTCC-ACTCA-TTT------ACTGGCCTGATTG-AGGATATCCAC-ACCACT-GTCCACTTGCAATGACAG-CTT-GTTAGTTGAAG--TTAAT------TGCAGGAT-CCACTTC--CTG-TTCAGAGG-AGGCACTGCTG-CCACTG-AAGCTG-AGATGAGAACT-GGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATTGATGAGAAATGGAGCA------CGTCTGCTG---TGAGACTCG-CTGGA--TGAGAAAGA--TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGA--GGA------AAAG-GCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGG--AAA-TACACCTATG-GACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTG-TTG-AATG-AGTTTT-GT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTTA-TTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGG-AAGGA-AGGC-TTGA-T-TGACTGCAA-TCCT-CTGCagtacattggtttcatcctctcttttctctttgagatattgctttgtatgaatgtatgtctggtgtaataggactgttgttgctaggctagttggtagatttgaatgcaatttcattgttg
gi|9 : CTATTGTTC-------TGTGAGG-TAGGGG-TTGTC-CAGA--TG-AG-TTTGGTATCA----------C--T-GATTTAG--AACATCG-GCGACATT-GGAGGCCATGGGCTGGAAA--GCA-G-ACGTATCCTTCTTAATGGT-CTT---C-A-ATTTAATTGGATGCTGGTTTC-C--AG-TGA--TTGACAAAGGT----A-TTGAAACACCCG-CACC-TTTTGTT-GGCC-AT-C-ACT-TCTTCACTTGTTTGC-GGGT-CAGTCCTGATAGTCT-CACCAGCTCGT--CTACTTCGCCGCCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTGTTTAAGTACATTG-----GTTTCAT-C--------------------CTCTCT-------------------------TTTCT---CTTTGAGATAT--TGCTTTGTATGAATGTATGTCTGGTGT-----------------------------AATAG-GACTG-TTGTTGCT-----AGGC--T---AGT---------T-GG-TAGA-TT-T-GAATGC-AATTTC---------AT
gi|14 : TAATTGGATTACGGTT-C-C--AG-TGA--TGGACAG-TGTTGTAGCT-GAAATC-------------TGCTTGGGC-CT-CAACT-TGTT-------TTGC-AA-TTCAGTCC-----------A--AG---------A----GTTGTCAGTGG--T-GTGG-TAC-AGACGTGGGGCGGGCA-CCAATTG-TTCAGTACATTG-----GT--------CA-GAATA-----TCCATCCTT--------C-C------------AAT-CTTTCT---CGTGAGGGATT--TACTTTGC-TG-AACTTCCCCTGGTGT-TGTAAC-A-AGCATTTCCTTCTCCTCTGAATGG-Gtgttg
gi|17 : atgTCCAGGCCCATGAA-AAGTTGTTCT-G-TTTCTTGATTC-CGGAGTTCTCTAATATTCTTTCTTCTCTTGAGGATATACT-CTCTGC-C-----TTCCACCGGTGTTGTT--CATTGATATTTCC-TCTCCTCT-AATAG-GA-TG-TAGTCACCA----AGGCTGTA-AATTGAGAT
gi|13 : ttagTAGCGACTGTT-GTCACTATCCTAG-C--TA-AAAGGGGATGAG-T-GAATAGATGTCT-GAAGGCGAGTTTCCCTCGTTTAACAT-GAGTCTG---G-A-TCTGAC-TCGTGAA-CACTG--------------------------------------------A--AGCAG--GT----GGAGCGAGACGTTGGAAGAATCAAATCGCTCTATGTTCACTGGGGT-GAGGCTGT-AGGCAACACA-GAAGCA-GT-GGCAGG-A-TCAGTTAAGAAACCACTTATG-ATCACTGAGG-GG-ACATATTTC-TC-A-T-GATCGAAGCGTCAGTGCATCTTCTT-GCAGttagttgattca
gi|11 : -TAAA-GT-T-GAAGGC-AGTCTC---------ACATTGAGT--T---A-TATCCAGC-CCCTGAAACACTG--------------------------GAGCTGAAGCTGTAGGGTA--GGCAG--G-----TGGGC-AGATGTCGGGAGAA-------ACACCGTAATCACTGGGG--G
gi|20 : atgaatccgTGGAGCACTG--------------------------G-----------------GGCAGCAGCTGTGGGGTAGGC-AGACGTTGGGAGAA-------ACgagatatcgctttgaagaaagctgcaacatcttctgctgtaatttcgaataagtcactttcctgtttgatgctgtccacaccactgtccacttgcaatggttgactggagccaatgaaattcacagaatccttttcctgttcagaggaggcactgctactgctactgctgcgaggagaactggagggggaaatgatttgtgatctctgttgctgtgataaagcagtgatgacattcaagtccggtgtattggggagaaccggagcatgtttg
gi|11 : tgaattaggactaaccatctgtCACTGGAGCTGAAGCTGT-AGG----GTA-G--GCAGGTGGGCAGATG-TCGG--GAGAAA-CAC-CGTA-ATCACTG-GG-GGGAGATATCGC-TTTG-AAGA---AAGCTGCAA--CATCTTC-T-GCTGTAATTTCG-AAT-AAGTC------ACTTTCCTGTTTG-ATGCTGTCCAC-ACCACT-GTCCACTTGCAATGG-----TT-G---ACTGGAG--CCAATGAAATTCACAGAAT-CCTTTTC--CTG-TTCAGAGG-AGGCACTGCTA-CTGCTA-CTGCTG-CGAGGAGAACT-GGAGGGGGAAATGATT-TGTGATCTCTGTTGCTGTGATAAAGCAGTGATGACATTCAAGTCCGGTGTATTGGGGAGAACCGGAGCA------TGTTTG
gi|19 : atgaatccgtaaagttgaaggcagtctcacattgagttatatccagcccctgaaaGGAGCAAGAGATTGTTTGCTG---TAAGACCCA-ATGGAAACAAGGGAGAACTGTCGAA--G----GAATGGATCCTGAG-GATGGTACTCGCATGTGG-GT--GAG-TCCAGTATT--ATTG
gi|12 : CTGCTG---TGAGACTCG-CTGGA--TGAGAAAGA--TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGA--GGA------AAAG-GCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGG--AAA-TACACCTATG-GACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTG-TTG-AATG-AGTTTT-GT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTTA-TTGTAGTCGTGGGTTAT
gi|3 : TGCTG---TGAGACTTGGCTGAA--CAAGGCGGAA-TGTCTGAAGG----AATCGGATCCTGAG-GACGG-AC-----TATGG-GTGGG-G-TCCA-TATTGGGTTGA--GAAGCAGAGAG---GCTGGTTATATGATCCATATGGTTGAGCAG-AGGCTGGTTATTATGAGTCTGAGGAAACATGATTTGATGCATGC-AAATTACACC-TTTGGACTTTGAAGCATATTGGGCATAGTAGATGAG-AAGGCCC-GGAATATGGC-AGATTCTGAGACT-GGCTCTGTAGTTGGGTTTGGGTTGCTGGTACTGACTTTTAGATTGGGGTCTGGAAATAACTGCTAGGAAA-GAG-CAATGCCGTATCC-ATTAT--CTTCCA-------GTTA----CT-GGAT---------TGG-A-----------TG--T-GACAGGCATTACCTACCGCAA-GGACATTCT--GGAGCTGGCTGAAAATGGGATTCCTCTGCATTTGGTTGGAAGAACTGG-GTGGATTGACAGGCTTTCATGGTTGTT-TTGT-TGTGCT--TGG--CTGGATGT-GGTG-TTTGACTGG-CTGTTTGGAAAAGCGGGTGGCTGGAGG-GGAGAAGAT-TTCTGT--CCTGCACTT-GTATATCTGTGGATAA--TCTGGGAAACCTC-TGGCCAGTAG----TCGCTGGGGCTGAACTTATTTTAGGGGTAAA-GTGCTGTAACTCTGAGTGGCAAAGC-A-TACTGCTGCTAGC-TGTACACAAAAGCATCTGGATATGTTCTGT--AGAA-ACCTGG-GGTAACACTATCTGTT-GGA--T--GGTCTGT-T-GAGGCGAAGG-----TGTAAGAAAGTGTTG-TATTCC
gi|10 : tTGGTCT-GGGTCCAGA-GGGTGA-AG-----GGCGTTGA-TTGAAG-GCAAGTCC--CTGCAAG--ACATCCCTGGGAGCTGGCTGTAATTTGGATTGCTCTGCATTTGGTTTGAAGAACTGGGAAGGG--GGA--GC-TTAGTGGCTGTTCTTGTATGTTCTG-TGGACTGGAATGTG-GTGTTT-GGCTGCTCTGTT-GGGAAAGT-GATGGGTGGAGGT-GAGAAGGTATTC--C--TCTCTATCT-GTG-ATCTGTGGGTAAAGACAGGGAAAGCTCTTGTCC--TAG----ATGTTGAGGCTT-------------GGT-AACGTGCTGTACATCTGAGTGGC--AGGCATTACTGCTGCT-GCATG--TA------CCT-T-GATCTGTACT-GTTAGAA-GTCTGTGGGGA--ACTC--TGTTGGGA--T------TGC-CAACTGCTGTAAGGCCTTG-AAGAAA--TTTGATCTTCCATTCTcatgcattcatcagagaaggtgcctgccacaactgaagaacaaggagcttagacaagtgcaataccaatatttgatgtgtatgaagaagtttgttgtctcagaattctgagcacccaataatttcccataggaaaggatgctttcggtggtaaggttatgatataaaagaaggagcacttgactgagactcagtacataagtttataagcgcgctggtggtgggcatgctccaacattctgagactaactcagcatggccaaacttcctcgcatccacgctcttccccatcacgtagtgccagtaattttgcaatccatcgacagaacccagggtttactttgtgttttctaaaaaattagtcaggaaataatcacttcagaactagcactacacactatgataaacacacaatcggataataactttataagtggaaagagtgggaattaggtcactgtaattgtgtaatgattagtctttaatttggagtatgggacagcgagcaaaggt
gi|5 : AGTCT-GGAT---GA-GGGTGG-AAGGA-AGGC-TTGA-T-TGACTGCAAT-CCT-CTGCAAGG-ACATCCT--GGAGCTTGCTGTAAATGGGATTTCTCTGCATTTGGTT-AAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTG-TGGC-TGGAATGTA-GTGTTT-GACTGGTCTGTT-GGGAAAGT-TATGGGTGGAGGT-GAGAAGGTATTC--T--C-TCTATCT-GTG-ATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCT-GTAG-----TTTTGAGGCG--------------GGT-AA-GTGCTGTACATCTGATTGGC--AGG-A-TACTGTTGCT-GCATG--TA------CTTCT-GATCTGTACTAG--AGAAGGCCT---GGTA--ACTA--TGTT-GGA--T--G---TGTCT-GTTGCCATGA-----TG-AAGAAA--CTTG-TCTTCCATTCT
gi|6 : AGTCT-GGAT---CA-GGGTGG-AGGGA-AGGC---------------AAT-CCT-CTTCAAGG-ACATCCT--GG------TTGTAAATGAAATTTCTCTGCATTTGGTT-GAATAACTGG-AAAAA--AGAAGGC-TTCATATTAGTT-TTGC-TGTTCTGTTGC--TGGAATGT-GGTG-CTTGACTTGTCTG-TTGTGAAAGT-GATGGCAGGAGA-TGAGAAGATATTC--T---CTCTATTTGGTT-ACCTGTGGACAA--GCAGAGAGC-CTC-TGTCC-GTAGCGAATCTCTA-------------------GGT-AA-GTTCTGTACATC-----------AG-A-TGCTGATGCT-TCGTG--TA------CTTCT-TATGTATTCTGT--AGAATTCCC---TGTA--ACTC--TGGG-GGAGGTAGG---TGTCT-GTTGCCACGG-----TG-AAgaagagcctgtacagtcgaacaacgagcttaagtctccaatatttgatttatgaagaatttttggagtctcaattcagcataaatgatgattttcaatgaaggatgctttgaattctgatttgatgatagcttgtacatggagctggcttcagtccagtatatatagctggtggtggacatgttctctattacctgagactctcgacttcatgccaacctcctcctcactcctctccatgccagccattgcaatccatcctcgacattgttttccttgtgcagtatatcaatatacatccagaaaaattgaattcatagtaatttctgacaattacacttatcaaattatgtttacagtgcagttcagctttaacagtgggaatgggacacctgtaattgggtaataatgattagattaattggataatggaggagcccaggtgt
gi|18 : GAAAGC-GGTGGCTGGAGGG-GAGAAGATATTC--TGTCCTC---CT-GTT-ATCTGTGGATAA--GCTGGGAAA-CTC-TGGCC-GTAG-----TGCTGGGGCTGAACTTTTG-----GGT-AA-GTGCTGTACATCTGAGTGGC--acattccttgaagctgaggcctgttacagtatcactattgtttatgattacagaggtaaagtgaacaaacactcagcatcaggaattttgtacgtcctctaccatcgataggcttttgatgacttacttgggactaagctcactcagagagcaggatgagcaccagtcgaacagtatatatagcgtgtgttggtacaactctctattacctgagactctcaacttcatcctttgtccttctcatactccacccattagtgccagtaaatctgacacaatacctccacaagatgtcttctttagtgtattatgagcaaaattattagtcaatattataacttcaaacattaattacaacttatgtgcaggaatttgtttatataagatggccccatgttcagctttatagagtgacccgcggcaatcaaacacctcgttaagctacatgcgtgtagattaattgggatggagccaaggaattgg
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): TATACAGTGGAACAAAGTGCTGAAGAAGGTCTCCAATGTTTGATGATGAAGGCTTCAGTTCACTATGCAGCAATTCTGGAAATGTCTTTGAATTCTTGTTGAGTGATAGTTATGGTAATGGGACAGAGCCATCCAGGACAGTATATATAGCTGGTGGTGGACATGTTCTCTATTACCTGAGACTCCTGTCATGCCAACCTCCTCCTCACTTCTCTCCATAGAGCCAGCAATGGCAGTTCCTAAGATTGTTTTGGTTGTGCAGTGTATCCAGTATGCATCCAGCTAAATTAAATTCCTAGTAATTTGTTACCATGACACTATCAAAACATGTATAGAGCAGGCCAGCTTGTACAGTTAGACTTCCATACCTATAATTGGGTAATGATTAGAGCCTGTTGACAATTGAGGAGCCCAGGTGAGA
Unaligned ( gi|21 ): GTGGGAATTAGGCACCTGTAATTGTGTAATGATTAGTTTAATTGGATAATGGAGGAGCAAAGGT
Alignments
lowQualScore : 111111111111111111111 111111111111111111111111111111111111111111111111111
lowQualScore : 111 22222 1 111 111 1 3333333 11 1 2222 33 11 44 1 22222 11 11 3333333 2 22 111111111111111111111 11 2 1 222 2 2 5555555555555555 111 333 222 2 44444 11 1 222 222 55555555555555555555 11 1111 1 11 111 22222 55555 2222222 1111111 222222222 1111 2 11 22 2222 22222 111 11 111111111111111111111111111111111111111111111111111 1 5555555555555555 222 11111 1 222222222 22222222 8888888888888888888888888888888888888888 22222222 2222222 11 11 22222222 111111 1 2 1 3333333 1 1 222222 111 1 222222 1 1 1 1 1 1 1 11 1 3 222 444444 1111 222 1111 11111 22222222 2222222 11 22222222 555555555555555 222 3333 1 222222 111 111111 111 2222222222 111 11 1 11 22 111 1 1 1 111111 1 222 8888888888888888 22222222 3333333333 1111 1111111 22222222 111 1
lowQualScore : 777 77777 0 2 1 0 6 777 3 000 0 1 1111111 1 33 0 66 1 3 9999 6 0 00 33 22 33 5 7 55555 33 1 7 33 1111111 1 7 6 3 0 1 22 000000000000000000000 33 1 3 7 0 2 999 3 22 1 3 6 9999999999999999 1 555 444 7 7 555 3 6 22222 3 99 3 333 555 44444444444444444444 88 6666 1 6 2 33 444 55555 2 33333 6666666 2 1 8 8 8 6666666 8 444444444 4444 8 8 8 3 3 8 99 0 0 11 8 8 1 1 00 2222 0 6 99 88 99 2 6 88888 555 6 5 1 7 2 6 6 2 6 3 1 2 1 8 11 66 5 8 0 8 8 5 555555555555555555555555555555555555555555555555555 6 1 3 99 1 6 9 1 2 9999999999999999 6 6 5 222 55555 99 6 6 6 6 6 6 6 666666666 6 11111111 0 1 8 1 1111111111111111111111111111111111111111 99 6 44444444 1111111 1 55 8 8 0 0 44 8 11 8 8 8 8 8 8 1 8 0 66666666 333333 8 4 0 0 0 2222222 4 2 0 0 0 0 222222 777 2 0 888888 0 3 0 0 0 0 2 0 0 22 0 3 33 0 111 0 2 333333 1 99 6 0000 111 99 4444 6 66666 6 99 6 6 6 99 22222222 0 0 6666666 11 8 99999999 88 000000000000000 000 8 8 2222 5 1 8 8 8 8 1 0 0 8 0 6 1 8 8 1 333333 8 8 8 8 666 3 1 5 444444 111 3 77 2222222222 5 111 5 8 11 0 5 6 8 11 0 8 1 8 8 77 999 3 0 0 0 0 77 2 6 222222 1 6 77 99 3 6 6 333 2 2222222222222222 6 6 2 99 8 8 8 8 9 8 99999999 8 1 1 99 8888888888 7777 1 8 3333333 7 55555555 8 444 0
lowQualScore : ... ..... . . . . . ... . ... . . ....... . .. . .. . . .... . . .. .. .. .. . . ..... .. . . .. ....... . . . . . . .. ..................... .. . . . . . ... . .. . . . ................ . ... ... . . ... . . ..... . .. . ... ... .................... .. .... . . . .. ... ..... . ..... ....... . . . . . ....... . ......... .... . . . . . . .. . . .. . . . . .. .... . . .. .. .. . . ..... ... . . . . . . . . . . . . . . .. .. . . . . . . ................................................... . . . .. . . . . . ................ . . . ... ..... .. . . . . . . . ......... . ........ . . . . ........................................ .. . ........ ....... . .. . . . . .. . .. . . . . . . . . . ........ ...... . . . . . ....... . . . . . . ...... ... . . ...... . . . . . . . . . .. . . .. . ... . . ...... . .. . .... ... .. .... . ..... . .. . . . .. ........ . . ....... .. . ........ .. ............... ... . . .... . . . . . . . . . . . . . . . . ...... . . . . ... . . . ...... ... . .. .......... . ... . . .. . . . . .. . . . . . .. ... . . . . . .. . . ...... . . .. .. . . . ... . ................ . . . .. . . . . . . ........ . . . .. .......... .... . . ....... . ........ . ... .
lowQualScore : 555 22222 2 0 0 0 5 555 2 222 0 0 5555555 0 88 5 55 0 2 3333 7 7 33 33 00 00 5 3 77777 33 0 3 33 7777777 0 3 7 7 7 0 00 333333333333333333333 33 0 7 3 7 0 333 3 00 0 7 7 3333333333333333 0 333 000 3 3 000 3 7 33333 7 77 3 333 777 33333333333333333333 33 0000 0 7 0 88 000 00000 5 00000 0000000 8 0 0 0 0 4444444 0 000000000 8888 0 0 0 4 8 0 00 8 8 00 0 0 0 0 00 8888 8 7 22 88 22 2 7 00000 000 7 2 7 3 5 7 7 5 7 2 0 5 0 0 00 22 0 0 8 0 0 6 555555555555555555555555555555555555555555555555555 7 0 3 22 0 7 5 5 5 5555555555555555 7 7 7 222 88888 22 7 0 7 7 7 7 7 777777777 4 22222222 8 0 0 0 3333333333333333333333333333333333333333 22 7 22222222 7777777 4 88 0 0 8 8 66 0 00 0 0 0 0 0 0 0 0 8 88888888 222222 0 2 0 0 0 5555555 0 5 2 8 0 0 888888 555 0 0 888888 0 2 0 0 0 0 0 0 0 55 0 2 55 0 000 2 0 222222 0 22 7 8888 333 22 2222 7 77777 7 22 7 7 7 22 00000000 8 8 0000000 00 0 00000000 88 000000000000000 000 0 0 8888 6 0 0 0 0 0 0 8 8 0 8 4 0 0 0 0 000000 0 0 0 0 888 2 7 7 444444 999 6 11 4444444444 7 666 7 0 00 8 0 0 0 00 8 0 0 0 0 00 666 6 6 8 8 6 33 5 7 888888 7 7 77 22 3 7 7 555 2 3333333333333333 7 7 5 22 0 0 2 0 6 0 00000000 0 0 0 00 4444444444 0000 0 0 8888888 8 44444444 0 888 0
consensus : ACCCAAAAGTGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATNCTATACTTAGAATTAGTTTT-ATCTTGCTCNTTG---ATAAGTTCTATTACATT-AA-TGGTATGCAGNAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGNAATATGAGTATA---TACAACGATGCATGGTTT--GATGGCAGTCAA-ACAAGAAAATTAC-AAC-AACAAGGCTCAATGTTCACCTTAANTG-TCTCCTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGTCT---------GCCTC-C---TCTTTGGACATCCTTG-AGAACTCTCTGCCTTTT--AGAG-ACCANTTCCACATGCT-GGCTGTA--CCTG----GGGA-AACTTTGGATTAAA-GGTAATTTCGGA-TTTGT-TTCTTCGTGTT---GTNTT--CA-CGA---CACCT--TTTGC---C-G-CCAGC-CA-CGCCTCACCTG--TTC-GGTGGTCAGGCCGGTCTTC--AT-C-CC-----AAGCTCTTC--CTTCTG-------TTGTTCTGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTG-----G---TACCA-A--T-GATTTA-G-AA-TATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACGTTTCCCTCTTAATGGTCTCC---AAACTTAATTGGATGCTGGTTTC-C--AGN-GA--TAGACAGGGT-GT--TTGAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTG-TTAAGTACATTG----GT----TCCATGCACATGAA-ATTCTTGCTCTCT--T-ATC--C-TATCTTTCTCT-TGAGGGNAT--TGCTTTGT-TG-AATTTCGTCTGGTG-T-GTTA-CA--AA-TATTTCC-TCTCCTCT-AATAG-GACTGTT-GTCACTA----AGGC--TA-AAATGGGATGAGTTGA-TAGA-GT-T-GAAGGC-AGTTTC---------ACGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGG-----------------A-------AGCAG--GT------TGG--GC-AG--------ACGTTGGGAGAA-------ACGCTATGATCACTGGGG--GAGGCTG-TAGGCAACACA-GAAGCAGGTGGGCAGGCA-TCGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TCTG-T-GA---AAGCANCAA-GCATCTTCT-GCGGT-AATTCCGACTC-ATT-------CACTGGCCTGNTTGAGGATGTCCAC-ACCAC-TGTCCACTTGCAATGAC-GG--CTTG---GTTG-GAGTTAAT------CGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCGCTG-AAGCTG-AGATGAGAAC-TGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTC-ACGTCGGGTGTATCGGTGAGAAACGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--CGAGGAAGAA-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGGCAA-A-TACACCTATTGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATG-AGTTTT-GGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-A-TTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--GGAAGGC-TTGA-T-GA-A-NG-CAA-T-CCT-CTGCAA-GGACATCCT--GGAGCTNGCTGTAAATGGGATTTCTCTGCATTTGGTT-GAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGGC-TGGAATGTGGGTGTTTTGACTGGTCTGTTTGGGAAAGC-GATGGNTGGAGG-TGAGAAGGTATTC--T--CCTCTATCTG-T-NATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCC-GTAGTTGTTGAGGC-GAA-CTT-T------GGT-AA-GTGCTGTACATCTGAGTGGC--AGG-A-TACTGCTGCT-GCATG-TA--------CTTCT-GATCTGTACTG-TAGAAG-GCC--T-GGGTAAC----TCTGTT-GGA--T--GTGTCTGTTGCCGT-A-GG---TG-AAGAAA--CTTG-TCTTCCATTCT
Reference ( family-6572 ) : ACCCAAAAGTGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCGTTATNCTATACTTAGAATTAGTTTT-ATCTTGCTCGTTG---ATAAGTTCTATTACATT-AA-TGATATGCAGNAAATAAGTATGAT-----TATATGANCAATGATTTCATTATA--ATGAAATAAGNAATATGAGTATA---CACAACGATGCATGGTTTTGGATGGCANNCAAGACAAGAAAATTACCAACNAACAAGGCTCNATGTTCACCTTAAGTGCTCTCCTCNTCCAACGTGTTGAGACATTCTAAGGGCANCGTCTGGTCTTCTTACGTGGCCTTCCACTTCTTTGGACATCCNTGTAGAACCCTCTGCCTTTTCAAGAGGACCNNTTNCACATGCTAGGCTGTAACNCTGCTTTGGGACAACTTTNGGTTAAACGATAATTTCGGGCNTTGTGTTCTTCGTGNTTATGTCTTNNCA-CGA---CACCT--TTTGC---C-GGCCANC-CA-CGCTTCACCTG--TTC-GNNGGTCAGNCCGGTCTTC--AT-C-CC-----AAGCTCGTCTACTTCTG-------TCGTTCNGTGGGG-TAGGG-G-TTGTC-CGGG--TGGG-TCTG-----G---TACCA-A--T-GATTTA-G-AAATATCACGAGAC-TT-NGAGGCCATGGGCTGGAGA--GCA-G-ACGTNTCCCTCTTNATGGTCTCC---AAACTTAATTGGATGCTGGTTTC-C--AGT-GA--TGGACAGGGT-GT--TTGAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTG-TTAAGTACATTG----GT----TCCATGC-CATGAA-ATTCTTGCTTTCT--T-ATC--C-TATCTTTCTCT-TGAGGGTAT--TGCTTTGT-TGAAATTTCCTCTGGTG-T-GTTA-CA--AA-TATTTCC-TCTCCTCT-AATAG-GACTGTTAGTCACTA----AGGC--TA-AAATGGGATGAG-TGA-TAGA-GT-T-GAAGGC-AGTTTC---------ACGTCGAGT--G---G-AATCNAAC-TCGTGAAGCACTGG-----------------A-------AGCAG--GT------TGG--GC-AG--------ACGTTGGGAGAA-------ACGCTATGATCACTGGGG--GAGGCTG-TAGGCAACACA-GAAGCAGGTGGGCAGGCA-TCGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ANATATTTC-TCTG-T-GA---AAGCGNCAA-GCATCTTCT-GCGGT-AATTCC-ACTC-ATT-------TACTGGCCTGTTTGAGGATGTCCAC-ACCAC-TGTCCACTTGCAATGAC-GG--CTTG---GTCG-GAGTTAAT------CGCAGAAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCGCTG-AAGCTG-AGATGAGAAC-TGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCA-TGATGACATTC-A-GTCGGGTGTATCGGTGAGAAACGGAGCAG-----CGTCTGCTGTGAGACTC--G-CTGGA--CGAGGAAGAA-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGGTTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGGCAA-A-TACACCTNTNGGACTTTGAAGCATATTGGGAATTNTGGA-GAG-AAGGCCC-GGAATTTGGC-AGANTCTGAGAATAGGCTCTGTAGTTGGG-CTGTGTTGCTNG-AATG-ANTTTT-GGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-A-TTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--GGAAGGC-TTGA-T-GA-A-NG-CAA-T-CCT-CTGCAA-GGACATCCT--GGAGCTGGCTGTAAATGGGATTTCTCTGCATTTGGTT-GAAGAACTGG-AAGGA--GGAAGGC-TTNATGGTTGTT-TTGT-TGTTCTGTGG--TGGAATGTGGGTGTTTTGACTGGTCTGTTTGGGAAAGC-GATGGCTGGAGG-TGAGAAGATATTC--T--CCTCTATCTG-T-NATCTGTGGATAA--GCAGGGAAA-CTC-TGTCC-GTAGTCGCTGGGGCTGAA-CTT-T------GGT-AA-GTGCTGTACATCTGAGTGGC--AGG-A-TACTGCTGCT-GCGTG-TA--------CTTCT-GATNTGTNCTG-NAGAA--GCC--T-GGGTAAC----TNTGTT-GGA--T--GTGTCCGTTGCCGC---GG---TG-AAGAAA--NTTG-TCTTCCATTCT
gi|1 : ACCCAAAAATGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATGTTATACTTAGAATTAGTTTT-ATCTTGCTCTTTGGTAATAAGTTCTATTATATT-AAATGGTATGACGTAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGTAATATGAGTATA---TA--ATGATGCATGGTTT--GATG-CAGTCAA--CA-GAAAA--AC--ACAAACAAG-CTCAATGTTCAC-TTAATTA---TCCTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGTT----------GCCTC-----TCTTTG-ACATCCTTG-AGAACTCTCTGCTTTT---AGAG-ACCATTTCCACATGCT-GGCTGT---CCTG-----GGA--ACTTTGGAT-AAA--GTAATT-CGGA-TTTGT-TTCTTCGTGTT---GTTTT--CA-CGA---CACCT--TTTGC---C-G-CCAGCACAGCGCTTCACCTG--TTC-AGTGGTCAGGCCGGTTTTC--AT-C-CC-----AAGCTCTTC--CTTCTG-------TTGTTCTGTGGGG-TAGGG-GGTTGTC-CAGG--TGGG-TCTC-----G---TACCA-A--T-GATTTA-G-AA-TATCACGAGAC-TT-TGAGGCC-TGGCTTGGAGA--GCA-G-ACATTTCCCTCTTCAT--TCTCT---ATACTTAATTGGATGCTGGTTTC-C--AGA-GA--TAGACAGGGT-GT----GAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGG-TCAGTCCTGACAGCCT-CACCAGCTCGT--CTAC--CGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAGTTG-TTAAGTACATTGTGAAGT----TCCATGCACATGAA-ATTCTTGCTTTCT--TCATC--CCTATCTTTCTCT-TAAGGGGAT--TGCTTTGT-TGAAATTTCGTTTGGTG-T-GTTAGCA--AAATATTTCC-TCTCCTCT-AATAG-GACTGTTTGTCACTA----AGGC--TA-AAATGGGATGAG-TGA-TAGA-GT-T-GAAGGC-AGTTTC---------ATGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGG-----------------A-------AGCAG--GT------TGG--GC-AG--------ACGTTGGAAGAA-------ACGCTATGATCACTGGGG--GAGGCTGTTAGGCAACACA-GAAGCAGGTGGGCAGACA-TTGG--GAGAAA-CAC-TATG-ATCACTG-GG-GA-ACATATTTT-TCTG-T-GA---AAGCATCAA-GCATCCTCT-GCAGTAAATTCC-ACTCAATT-------TACTGGCCTGATT-AGGATATCCAC-ACCACTTGTCCACTTGCAATGACAGG--CTTG---GTTG-AAGTTAAT------TGCAGGAT-CCAC-TC-CTG-TTCAGAGG-AGGCACTGCTG-CCACTG-AAGCTG-AGATGAGAACTTGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTC-ACGTCGGGTGTATTGATGAGAAATGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--TGAGAAAG-A-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AA--GCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAG--AA-A-TACACC-AT--GACTTTGAAGCATATTGGG-ATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATGAAGTTTT-GGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-ATTTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--AGGAGGC-TTGA-T-GA-ACTG-CAATT-CCT-CTGCAAGGGACATCCT--GGAGCTTGCTGTAAATGGGATTTCTCTGCATTTGGTT-AAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG--TGGAATGTAAGTGTTTTGACTGGTCTGTTTGGGAAAGT-TATGGGTGGAGGTTGAGAAGGTATTC--T--CCTCTATCTG-T-GATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCT-GTAGTTTTTGAGGC----------------GGT-AA-GTGCTGTACATCTGATTGGC--AGG-A-TACTG-TGCT-GCATGTTA--------CTTCT-GATCTGTACTA-GAGAAG-GCC--T--GGTAAC----TATGTT-GGA--T--GTGT-TGTTGCCAT---GA---TG-AAGAAA--CTTG-TCTTCCATTCT
gi|10 : TGGTCT-GGGTCCAGA-GGGTGAAG--GG----CGTTGA-TTGA-A-GG-CAA-G-TCC-CTGCAA-G-ACATCCCTGGGAGCTGGCTGTAATTTGGATTGCTCTGCATTTGGTTTGAAGAACTGGGAAGGG--GGA--GC-TTAGTGGCTGTTCTTGTATGTTCTGTGGACTGGAATGTGG-TGTTT-GGCTGCTCTGTT-GGGAAAGT-GATGGGTGGAGG-TGAGAAGGTATTC--C--TCTCTATCTG-T-GATCTGTGGGTAAAGACAGGGAAAGCTCTTGTCC--TAGATGTTGAGGC-------T-T------GGT-AACGTGCTGTACATCTGAGTGGC--AGGCATTACTGCTGCT-GCATG-TA--------CCT-T-GATCTGTACTGTTAGAA--GTCTGT-GGGGAAC----TCTGTTGGGA--T---TGCCAACTGCTGTAA-GGCCTTG-AAGAAA--TTTGATCTTCCATTCTccag
gi|11 : -TAAA-GT-T-GAAGGC-AGTCTC---------ACATTGAGT--T---A-TATCCAGC-CCCTGAAACACTGGAGCTGAAGCTGTAGGGTA-------GGCAG--G-------TGG--GC-AG--------ATGTCGGGAGAA-------ACACCGTAATCACTGGGG--G
gi|11 : atgaatccgCACTGGAGCTGAAGCTG-TAGG----GTA-G--GCAGGTGGGCAGATG-TCGG--GAGAAA-CAC-CGTA-ATCACTG-GG-GGGAGATATCGC-TTTG-AAGA---AAGCTGCAA--CATCTTCT-GCTGT-AATTTCGAATA-AGT-------CACTTTCCTGTTTGATGCTGTCCAC-ACCAC-TGTCCACTTGCAATGG-------TTG---ACTG-GAGCCAATGAAATTCACAGAAT-CCTTTTC-CTG-TTCAGAGG-AGGCACTGCTA-CTGCTA-CTGCTG-CGAGGAGAAC-TGGAGGGGGAAATGATT-TGTGATCTCTGTTGCTGTGATAAAGCAGTGATGACATTCAA-GTCCGGTGTATTGGGGAGAACCGGAGCA------TGTTTGgagatatcgctttgaagaaagctgcaacatcttctgctgtaatttcgaataagtcactttcctgtttgatgctgtccacaccactgtccacttgcaatggttgactggagccaatgaaattcacagaatccttttcctgttcagaggaggcactgctactgctactgctgcgaggagaactggagggggaaatgatttgtgatctctgttgctgtgataaagcagtgatgacattcaagtccggtgtattggggagaaccggagcatgtttg
gi|12 : atgaatccgtaaagttgaaggcagtctcacattgagttatatccagcccctgaaaCTGCTGTGAGACTC--G-CTGGA--TGAGAAAGA--TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGG-AA-A-TACACCTAT-GGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTG-TTG-AATG-AGTTTT--GT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-A-TTGTAGTCGTGGGTTAT
gi|13 : TAGCGACTGTT-GTCACTATCCTAG-C--TA-AAAGGGGATGAG-TGAATAGATGTCT-GAAGGCGAGTTTCCCTCGTTTAACAT-GAGTCTG---G-A-TCTGAC-TCGTGAA-CACTG------------------A-------AGCAG--GT------GGA--GCGAG--------ACGTTGGAAGAATCAAATCGCTCTATGTTCACTGGGGT-GAGGCTG-TAGGCAACACA-GAAGCA-GT-GGCAGG-A-TCAGTTAAGAAACCACTTATG-ATCACTGAGG-GG-ACATATTTC-TC-A-T-GATCGAAGCGTCAGTGCATCTTCT-
gi|14 : TAATTGGATTACGGTT-C-C--AGT-GA--TGGACAGTGTTGTAGCTGAAATC-------------TGCTTGGGC-CT-CAACT-TGTT-------TTGCAATTCAGTC-----------CA--AG---------A----GTTGTCAGTGG--T-GTGG-TAC-AGACGTGGGGCGGGCA-CCAATTG-TTCAGTACATTG----GT------CA-------GAATATCCATCCT---------TC--C-AATCTTTCTCG-TGAGGGATT--TACTTTGC-TG-AACTTCCCCTGGTGTT-GTAA-CA--AG-CATTTCCTTCTCCTCTGAATGG-Gtgcag
gi|15 : atgAAAGTGGAATGAAATGAAAGGAAAATTAAAAAAATCCAAGAAACGACATTCAACATTTAGAATTACTTTTTATCTTACTTGTTG---ATAAATTCTTTTACA---AA-TGAGATGCAAAAATTCAGTATGAT------ACATGAGCACTGATTTGATTGTA--ATGAATTA-GAAATATGAGTATA---TACAATAATACATGGTTT--GAT-GCATGCA
gi|16 : ACCCAAAAATGGAATGAAA---GAGGAA-G---AAATAACCGAAGAAGCATTATGTTATACTTAGAATTAGTTTT-ATCTTGCTCTTTG---GTAAGTTCTATTATATTAAA-TGGTATGCAGTAAATAAGTATGATAATGATATATGATCAATGATTTCAATATATGATAAAAT-AGTAAT-TGAGTAgatagaaca
gi|17 : aaaacGTTCTCTAAT-ATT--C-TTTCTT-CTCT-TGAGGATATACT-CTCTGC-C-----TTCCACCGGTG-TTGTT--CATTGA-TATTTCC-TCTCCTCT-AATAG-GA-TG-TAGTCACCA----AGGCTGTA-AATTGAGAT
gi|18 : ttagtccaggcccatgaaaagttgttctgtttcttgattccggaGAAAGC-GGTGGCTGGAGG-GGAGAAGATATTC--TGTCCTC---CTG-T-TATCTGTGGATAA--GCTGGGAAA-CTC-TGGCC-GTAGT-GCTGGGGCTGAA-CTT-TTG----GGT-AA-GTGCTGTACATCTGAGTGGC--ttagttgattca
gi|19 : GGAGCAAGAGATTGTTTGCTGTAAGACCC--A-ATGGAAACAAGGGAGAACTGTCGAA--G----GAATGGATCCTGAG-GATGGTACTCGCATGTGG-GT--GAG-TCCAGTATT--ATTG
gi|2 : AAGTGGAATTTAA---GGGGAAA-----AATAACCAAAGAAGAATTATCCTATACTTAAAATTAGTTTT-ATCTTGCTCATTG---ATAAGTTCTA--ACTTT-AA-TGATGTGCAGGAAATAAGTATGA------TATATGACCAATGATTTCATTATG--AT-AAATAAGGAATATGAGTATAAGGTACAACGATGCATGGTTTTGGATGGCAGTCAA-ACAAGAAAATTACCAACCAACAA-GTTCAATG-TCA-CTTAAAT--TCTCCTCTTCCAACATGTTGAGACATTCTAAGGGCATCATCTAGTCT---------GCCTTCC---TCTTT-GACATCCTTG-AGAACTCTCTGCCTTTT--AGAGGACCTATTCCACATGCTAGGCTGTAACTCTG----GGGACAACTTTTGG-TAAA-GATAA-TTCGGG-ATTATGTTCTTCGTG-----GTGTTGGCACCGACTTCATCTTATTTGCA--CAAGCCAGC-CG-C---TCACCTGCTTCC-AGTGGTCAAACC-GTCTTC--ATGCGCC-----AA-CTCTTTT--TTCTG-------CTCTTCAGTAGGG-TATGG-G-TTTTCGCAAGATTTGC-TTTG-----G---TACCA-ACTT-GCTTTAGG-AAATAT-ACAACAT-TTGGGAGGCCATGGGCTGGAAAAGGCA-GAACGTATCCTTATTAATGGTCTTC----AATTTAATTGGATGCTGGTTTCGC--TGT-GACTTGGACAGGGT-A---TTGAAA-CACCG-CACTCTTTTG-TTGGCCAAT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCTCCACCAGCTCGTGCCTACTTCGGTGTCGGTGGGATAATGGGTACTGGGTGTGGCTCTGGTATCCAATTG-TT-AGTACATTG----G------------------------------TCT--C-ATC--C-TCTCTTTTTCTCTGA-GGTAT--TGCTTGGT-TG-GATGTCCTCTGGTG------------------------------T-AATAG-GACTG--AGTCACTG----TGGC--TATAAATGGGGTGAATTGA-TAAA-GT-TGGAAGGC-AATTTC---------ATGTTGAGC--GTAAGTAATCGAACATGGTGAAGCACTGG-----------------GGCTGGATAGCTGTAGTGCAACATAGAAGC-AGGTGGGCAGACTTTGGGAGAA-------ACACTATGATCACTGGGG--AAAGCTG-TAGGCAACACACGAAGCAGGTGGGCAGGCACTTGG--GAGAAA-CAC-TATGAATCACTG-GGAGG-AAATATTTCAACTG--------AAGCAAC-A-GCATCTTTTCGCGGT-AATTCCAACTC-ATTCTTCCCCCACTGGCCTGTTTGAAGGAGTCCACAACCAC-TGTCCACTTGCAATGAC-GGACCTAG---GTCGTGTCTTAAT------CGCAGAATGCCACTTCACTGTTTCAGAGGAAGGCACTGCTGCCCACTGAAAGGTGAAGATGAGAA--TGGTGGGAGAAATGGTTGGGTGATTTCTGTTTC----A--------------------A-GTCAGGTGTATCAGTGAGAAAC--AGCAG-----CATCTG--GT--GACTTGAG-CTTGA--C--CGAAG-A-TGTCAGA--GGAGAAAGTGGAATCAGAGCGAAGATGC-----TATGGAGT--G-GCTCCA-TATT--GTTGAAGGGCA----AGAGGTTGGTTATATAA-CC-------TGAG--GAAAAC--------ATGA--TTGA---------------TGCA-GCAAGA-TACATCT-TTGGATGTTGAAG-ATATT-GGAATTGTAGA-GAGAAAGGCCCAGGAATTTGGCAAGATTCTGAGAGCAGGCTCTGT-GTTGGG-TTGTG-TGTTGG-GATG-ACTTTT-GTG--GGATCTGG-AATTT-TGCTGGGAAGCAGACCGCTGTTGTATCCAATTGTTAA-TTGTTATCATGGGTCACAGTCTGGGAT---CAGGGGTGGAAGTGGAAGGC-TTGATT-GA-A-GGCCAA-TGTCT-CTGC
gi|20 : agaacacctTGGAGCACTGG-----------------GGC-----AGCAGCTGTGGGG--TAG--GC-AG--------ACGTTGGGAGAA-------ACctgggtaagggg
gi|3 : tgaattaggactaaccatctgtTGCTGTGAGACTT--GGCTGAA--CAAGGCGGAA-TGTCTGAAGG----AATCGGATCCTGAG-GACGG-AC-----TATGG-GTGGG-G-TCCA-TATTGGGTTGAGA---AGCAGAGAGGCTGGTTATATGATCCATATGGTTGAGCAG-AGGCTGGTTATTATGAGTCTGAGGAAACATGATTTGATGCATGCAA-ATTACACCT-TTGGACTTTGAAGCATATTGGGCATAGTAGATGAG-AAGGCCC-GGAATATGGC-AGATTCTGAGACT-GGCTCTGTAGTTGGGTTTGGGTTGCTGGTACTG-ACTTTTAGATTGGGGTCTGGAAATAACTGCTAGGAAA-GAG-CAATGCCGTATCC-ATTATC---TTCCA-------GTTA----CT-GGAT---------TGGA------------TG--T-GACA-GG-CAT-TACCTACCGCAA-GGACATTCT--GGAGCTGGCTGAAAATGGGATTCCTCTGCATTTGGTTGGAAGAACTGG-GTGGATTGACAGGCTTTCATGGTTGTT-TTGT-TGTGCT-TGG--CTGGATGT-GGTG-TTTGACTGG-CTGTTTGGAAAAGCGGGTGGCTGGAGG-GGAGAAGAT-TTCTGT--CCTGCACTTG-TATATCTGTGGATAA--TCTGGGAAACCTC-TGGCCAGTAGTCGCTGGGGCTGAA-CTTATTTTAGGGGTAAA-GTGCTGTAACTCTGAGTGGCAAAGC-A-TACTGCTGCTAGC-TG-TACACAAAAGCATCTGGATATGTTCTG-TAGAA--ACC--TGGGGTAACACTATCTGTT-GGA--T--G-GTCTGTTGAGGCGAAGG---TGTAAGAAAGTGTTG-TATTCC
gi|4 : tTC--AT-C-CC-----AAGCTCTTC--CTTCTG-------TTGTTCTGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTC-----G---TACCA-A--T-GATTTA-G-AA-TATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACATTTCCCTCTTCAT--TCTCTT--AAACTTAATTGGATGCTGGTTTC-C--AGA-GA--TAGACAGGGT-GT--T-GAAAC-ACCG-CACCCTTTTGTT-GGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGCAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAGTTG-TTAAGTACATTG----GTGAAGTCCATGCACATGAA-ATTCTTGCTTTCT--TCATCCTC-TATCTTTCTCT-TAAGGGGAT--TGCTTTGT-TG-AATTTCGTTTGGTG-T-GTTAGCA--AA-TATTTCC-TCTCCTCT-AATAG-GACTGTT-GTCACTA----AGGC--TA-AAATGGGATGAGTTGA-TAGA-GT-T-GAAGGC-AGTTTC---------ATGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACT-G-----------------A-------AGCAG--G-------TGG--GC-AG--------ACGTTGGAAGAA-------ACGCTATGATCACTGGGG--GAGGCTG-TAGGCAACACA-GAAGCAGGTGGGC---CA-TTGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TCTGAT-GA---AAGCAC--A-GCATCTTCT-GCAGT-AATTCC-ACTC-ATT-------TACTGGCCTGATTGAGGATATCCAC-ACCAC-TGTCCACTTGCAATGAC-AG--CTTGTTAGTTG-AAGTTAAT------TGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCACTG-AAGCTG-AGATGAGAAC-TGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTC-ACGTCGGGTGTATTGATGAGAAATGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--TGAGAAAG-A-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGG-AA-A-TACACCTAT-GGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTG-TTG-AATG-AGTTTT--GT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-A-TTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAA--GGAAGGC-TTGATT-GA-C-TG-CAA-T-CCT-CTGCcatgcattcatcagagaaggtgcctgccacaactgaagaacaaggagcttagacaagtgcaataccaatatttgatgtgtatgaagaagtttgttgtctcagaattctgagcacccaataatttcccataggaaaggatgctttcggtggtaaggttatgatataaaagaaggagcacttgactgagactcagtacataagtttataagcgcgctggtggtgggcatgctccaacattctgagactaactcagcatggccaaacttcctcgcatccacgctcttccccatcacgtagtgccagtaattttgcaatccatcgacagaacccagggtttactttgtgttttctaaaaaattagtcaggaaataatcacttcagaactagcactacacactatgataaacacacaatcggataataactttataagtggaaagagtgggaattaggtcactgtaattgtgtaatgattagtctttaatttggagtatgggacagcgagcaaaggt
gi|5 : AGTCT-GGAT---GA-GGGTGGAA--GGAAGGC-TTGA-TTGA-C-TG-CAA-T-CCT-CTGCAA-GGACATCCT--GGAGCTTGCTGTAAATGGGATTTCTCTGCATTTGGTT-AAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGGC-TGGAATGT-AGTG-TTTGACTGGTCTG-TTGGGAAAGT-TATGGGTGGAGG-TGAGAAGGTATTC--T---CTCTATCTG-T-GATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCT-GTAGTT-TTGAGGC-G--------------GGT-AA-GTGCTGTACATCTGATTGGC--AGG-A-TACTGTTGCT-GCATG-TA--------CTTCT-GATCTGTACTA-GAGAAG-GCC--T--GGTAAC----TATGTT-GGA--T--GTGTCTGTTGCCAT---GA---TG-AAGAAA--CTTG-TCTTCCATTCT
gi|6 : AGTCT-GGAT---CA-GGGTGGAG--GGAAGGC-----------------AA-T-CCT-CTTCAA-GGACATCCT--GG------TTGTAAATGAAATTTCTCTGCATTTGGTT-GAATAACTGG-AAAAA--AGAAGGC-TTCATATTAGTT-TTGC-TGTTCTGTTGC-TGGAATGTGG-TGCTT-GACTTGTCTGTT-GTGAAAGT-GATGGCAGGAGA-TGAGAAGATATTC--T--C-TCTATTTGGT-TACCTGTGGACAA--GCAGAGAGC-CTC-TGTCC-GTAGC----------GAATCTC-TA-----GGT-AA-GTTCTGTACATC-----------AG-A-TGCTGATGCT-TCGTG-TA--------CTTCT-TATGTATTCTG-TAGAATTCCC--T---GTAAC----TCTGGG-GGAGGTAGGTGTCTGTTGCCAC---GG---TG-AAgaagagcctgtacagtcgaacaacgagcttaagtctccaatatttgatttatgaagaatttttggagtctcaattcagcataaatgatgattttcaatgaaggatgctttgaattctgatttgatgatagcttgtacatggagctggcttcagtccagtatatatagctggtggtggacatgttctctattacctgagactctcgacttcatgccaacctcctcctcactcctctccatgccagccattgcaatccatcctcgacattgttttccttgtgcagtatatcaatatacatccagaaaaattgaattcatagtaatttctgacaattacacttatcaaattatgtttacagtgcagttcagctttaacagtgggaatgggacacctgtaattgggtaataatgattagattaattggataatggaggagcccaggtgt
gi|7 : AATTAC-AA--AACAAGGCTTCATGTTCACCTTA-GTGCTTTCCTCATCCAACGTAT-GA-ACATTC-AAGGACAATGT--GGT-TTCTTACGTGGCTT--CACTTCTTTGGATATCCATGTAGA--CCTCTGC-TTTTCAAGAG--CCACTTACACATGCT-GGCT-TA---CTGCTTTGG---AACTTTGGATTAAACG-TAATTTCGGACTTTGT--TCTTC-TGTTTATGTCTTTTCA-CGA---CACC---TTTGCTCGC-GCCCAG---A-CGTCTCACCTG--TTCAGTTTGGCAGGCCGGT-TTCTAAT-T-CCTTCATATGCTCAT---CTTCTGTGATTCCTCGCTTTGTGGGGATGGAGTG-TTGTC---AG--TGGGATCTGCACCAGCTTTACCACA--TAGATTTA-GCAAGTATC-CGAGAC-TT-TG-GGCCAT-GGCTGGAGA--GCACG-ACATTGTCCTCTCATTG--CTCCGTTAAACTTAAGTTGATGCTGGTTTC-CCAAGCAGA--TAGA-AGGGT-G---TTGAAA-CACCGCCGCCTTTTTGTTTTG-C-ATGCCACTCTGTTCAC-TGTTTGC-GGTCAGTCTTGACAGCCacattccttgaagctgaggcctgttacagtatcactattgtttatgattacagaggtaaagtgaacaaacactcagcatcaggaattttgtacgtcctctaccatcgataggcttttgatgacttacttgggactaagctcactcagagagcaggatgagcaccagtcgaacagtatatatagcgtgtgttggtacaactctctattacctgagactctcaacttcatcctttgtccttctcatactccacccattagtgccagtaaatctgacacaatacctccacaagatgtcttctttagtgtattatgagcaaaattattagtcaatattataacttcaaacattaattacaacttatgtgcaggaatttgtttatataagatggccccatgttcagctttatagagtgacccgcggcaatcaaacacctcgttaagctacatgcgtgtagattaattgggatggagccaaggaattgg
gi|9 : CTA-------TTGTTCTGTGAGG-TAGGG-G-TTGTC-CAGA--TGAG-TTTG-----G---TATCA-C--T-GATTTA-G-AA-CATCG-GCGACATT-GGAGGCCATGGGCTGGAAA--GCA-G-ACGTATCCTTCTTAATGGTCTTC---AA-TTTAATTGGATGCTGGTTTC-C--AGT-GA--TTGACAAAG--GTA-TTGAAACACCCG-CACC-TTTTGTT-GGCC-AT-C-ACT-TCTTCACTTGTTTGCGGGTCAGTCCTGATAGTCT-CACCAGCTCGT--CTACTTCGCCGCCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTGTTTAAGTACATTG----GT----TTCAT-C---------------CTCTCT---------------TTTCTCT-TTGAGATAT--TGCTTTGTATGAATGTATGTCTGGTG------------------------------T-AATAG-GACTGTT-GTTGCT-----AGGC--T---AGT---------TGG-TAGA-TT-T-GAATGC-AATTTC---------Agt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TATACAGTGGAACAAAGTGCTGAAGAAGGTCTCCAATGTTTGATGATGAAGGCTTCAGTTCACTATGCAGCAATTCTGGAAATGTCTTTGAATTCTTGTTGAGTGATAGTTATGGTAATGGGACAGAGCCATCCAGGACAGTATATATAGCTGGTGGTGGACATGTTCTCTATTACCTGAGACTCCTGTCATGCCAACCTCCTCCTCACTTCTCTCCATAGAGCCAGCAATGGCAGTTCCTAAGATTGTTTTGGTTGTGCAGTGTATCCAGTATGCATCCAGCTAAATTAAATTCCTAGTAATTTGTTACCATGACACTATCAAAACATGTATAGAGCAGGCCAGCTTGTACAGTTAGACTTCCATACCTATAATTGGGTAATGATTAGAGCCTGTTGACAATTGAGGAGCCCAGGTGAGA
Unaligned ( gi|21 ): GTGGGAATTAGGCACCTGTAATTGTGTAATGATTAGTTTAATTGGATAATGGAGGAGCAAAGGT
Alignments
lowQualScore : 111 22222 1 111 111 1 3333333 11 222 11 3333 1 1 1 33 11 11 22 1 22 5555555555 1 333 11 1 1 1 1 1 44444444444444 1 111 1 1 1 2 222 11 1 222 222 44444444444444444444 11 11 1 11 111 22222 2222222 11 222222222 1111 22 11 22 111111 3333 1 11 1111 999999999999999999999999999999999999999999999 5555555555555555 11111 222222222 22222222 8888888888888888888888888888888888888888 22222222 2222222 11 11 22222222 1 1 1 3333333 1 1 222222 111 1 222222 1 1 1 1 1 1 1 1 1 333333 1111 222 1111 11111 22222222 2222222 11 22222222 555555555555555 222 2222 1 222222 111111 111 2222222222 1 11 1 11 2 2 1 222222 1 111 8888888888888888 22222222 3333 1111 1111111 11 2222222 111 1
lowQualScore : 777 77777 0 1 0 1 777 3 000 0 1 1111111 0 33 7 66 1 3 333 6 0 88 0000 5 5 3 66 33 7 33 88 55 7 7 6 3 00 1111111111 3 000 33 3 7 2 3 3 7 1 3 6 22222222222222 3 333 3 2 3 3 3 6 333 88 1 3 333 555 55555555555555555555 88 6 88 7 6 2 33 444 55555 2 6 6666666 8 8 8 8 11 8 444444444 4444 8 22 3 8 88 0 0 11 8 8 1 0 00 999999 0 6 99 77 99 0 6 3333 7 3 6 5 9 2 6 6 2 6 3 1 2 1 8 11 66 5 8 0 8 8 5 7777 333333333333333333333333333333333333333333333 3 1 1 6 6 6 1 9999999999999999 6 6 5 6 55555 99 6 5 3 6 6 6 6 666666666 6 11111111 0 8 1 1111111111111111111111111111111111111111 99 6 44444444 1111111 1 55 8 8 0 0 44 8 11 8 8 8 8 8 8 8 0 66666666 88888 8 4 0 9 0 2222222 1 2 0 0 0 0 222222 777 0 888888 0 3 0 0 0 0 2 0 0 2 0 0 3 0 2 2 2 0 2 111111 1 99 6 0000 111 99 4444 6 66666 6 99 6 6 6 99 22222222 0 0 6666666 11 8 99999999 88 000000000000000 000 8 8 2222 0 0 8 8 8 8 1 0 0 8 0 3 0 8 8 333333 8 8 8 8 88 8 3 1 5 444444 111 3 77 2222222222 5 7 5 8 11 0 3 6 8 11 0 8 0 8 8 8 0 3 0 0 0 0 0 77 1 6 111111 1 6 77 99 3 6 6 111 4444444444444444 6 6 2 99 8 8 8 8 3 8 99999999 8 1 88 88 0000 7777 8 3333333 11 7777777 8 444 0
lowQualScore : ... ..... . . . . ... . ... . . ....... . .. . .. . . ... . . .. .... . . . .. .. . .. .. .. . . . . .. .......... . ... .. . . . . . . . . . .............. . ... . . . . . . ... .. . . ... ... .................... .. . .. . . . .. ... ..... . . ....... . . . . .. . ......... .... . .. . . .. . . .. . . . . .. ...... . . .. .. .. . . .... . . . . . . . . . . . . . . . .. .. . . . . . . .... ............................................. . . . . . . . ................ . . . . ..... .. . . . . . . . ......... . ........ . . . ........................................ .. . ........ ....... . .. . . . . .. . .. . . . . . . . . ........ ..... . . . . . ....... . . . . . . ...... ... . ...... . . . . . . . . . . . . . . . . . . . ...... . .. . .... ... .. .... . ..... . .. . . . .. ........ . . ....... .. . ........ .. ............... ... . . .... . . . . . . . . . . . . . . . ...... . . . . .. . . . . ...... ... . .. .......... . . . . .. . . . . .. . . . . . . . . . . . . . .. . . ...... . . .. .. . . . ... ................ . . . .. . . . . . . ........ . . .. .. .... .... . ....... .. ....... . ... .
lowQualScore : 555 22222 2 0 0 0 555 2 222 0 0 5555555 8 88 0 55 0 2 333 7 7 33 0000 5 5 3 77 33 3 33 33 33 3 3 7 3 00 3333333333 3 333 33 3 3 0 3 3 3 0 3 7 33333333333333 3 777 7 3 3 3 7 7 333 33 0 3 333 777 33333333333333333333 33 0 33 3 7 0 88 000 00000 5 5 0000000 0 0 0 0 00 0 000000000 8888 0 00 8 0 66 8 8 00 0 0 4 6 00 222222 8 7 22 77 22 3 7 0000 7 2 7 2 8 5 7 7 5 7 2 0 5 0 0 00 22 0 0 8 0 0 6 0000 333333333333333333333333333333333333333333333 2 0 0 7 7 7 0 5555555555555555 7 7 7 7 88888 22 7 7 6 7 7 7 7 777777777 4 22222222 8 0 0 3333333333333333333333333333333333333333 22 7 22222222 7777777 4 88 0 0 8 8 66 0 00 0 0 0 0 0 0 0 8 88888888 66666 0 2 0 0 0 5555555 0 5 2 8 0 0 888888 555 0 888888 0 2 0 0 0 0 0 0 0 5 0 0 2 2 5 5 5 2 0 000000 0 22 7 8888 333 22 2222 7 77777 7 22 7 7 7 22 00000000 8 8 0000000 00 0 00000000 88 000000000000000 000 0 0 8888 8 6 0 0 0 0 4 8 8 0 8 6 6 0 0 000000 0 0 0 0 88 0 2 7 7 444444 999 6 11 4444444444 7 1 7 0 00 8 8 0 0 00 8 0 6 0 0 0 8 2 4 8 8 6 8 33 0 7 222222 7 7 77 22 3 7 7 777 5555555555555555 7 7 5 22 0 0 2 0 8 0 00000000 0 4 66 22 0000 0000 0 8888888 00 0000000 0 000 0
consensus : ACCCAAAAGTGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATNCTATACTTAGAATTAGTTTT-ATCTTGCTCNTTG---ATAAGTTCTATTACATT-AA-TGGTATGCAGNAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGNAATATGAGTATA---TACAACGATGCATGGTTT--GATG---GCAGTCAAACAAGAAAATTA-CAA--AACAAGGCTCAATGTTCACCTTAANTG-TCTCCTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGTCT--------GCC-TC--CTCTTTGGACATCCTTG-AGAACTCTCTGCCTTTTA-GA-GACCANTTCCACATGCT-GGCTGTA--C--CTGGGG--AAC-TTTGGATTAAANGTAATTCCGGA-TT-TG-TTCTTCGTGT---TG--TTTTCA-CGA---CACCT--TTTGC-C--GCCAGC-C---G-CGCCTCACCTG--TTCAG--TGGTCAGGCCGGTCTTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTG-----G---TACCA-A--T-GATTTAG-AAATATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACGTTTCCCTCTTAATGGTCTC-C---AAACTTAATTGGATGCTGGTTTC-C--AG-NGA--TAGACAGGGT-GT--TTGAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTG-TTAAGTACATTG----GT----TCCATGCACATGAA-ATTCTTGCTCTCT--T-ATC--C-TATCTTTCTCTTGAGGGNATTGCTTTGT-TGAA-TTT-CGTCTGGTG-T-GTTA-CA--AA-TATTTCC-TCTCCTCT-AATAG-GACTGTT-GTCACTA----AGGC--TA-AAATGGGA-TGAGTTGATAGA-GT-T-GAAGGC-AGTTTC---------ACGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGG-----------------A-------AGCAG--GT------TGG--GC-AG--------ACGTTGGGAGAA-------ACGCTATGATCACTGGGG--GAGGCTGT-AGGCAACACA-GAAGCAGGTGGGCAGGCA-TCGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TCTG-T-GA---AAGCANCAA-GCATCTTCT-GCGGTAA-TTCCGACTCA-TT-------CACTGGCCTGNTTGAGGATGTCCAC-ACCACT-GTCCACTTGCAATGAC-GG--CTTG---GTTG-GAGTTAAT------CGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCGCTG-AAGCTG-AGATGAGAACT-GGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATCGGTGAGAAACGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--CGAGGAAGAA-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGGCAA-A-TACACCTATTGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATGA-GTTTT-GGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-ATT-GTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--GGAAGGC-TTGA-T-GA-AN-G-CAAT-CCT-CTGCAAGG-ACATCCT--GGAGCTNGCTGTAAATGGGATTTCTCTGCATTTGGTT-GAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG-CTGGAATGT-GGTGTTTTGACTGGTCTGTTTGGGAAAGC-GATGGNTGGAGG-TGAGAAGGTATTC--T--CCTCTATCT-GT-NATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCC-GTAGTTGTTGAGGC-GAA-CTT-T------GGT-AA-GTGCTGTACATCTGAGTGGC--AGG-A-TACTGCTGCT-GCATG-TA--------CTTCT-GATCTGTACTG-TAGAAGNCC-T-GGGTAAC----TCTGTT-GGA--T--GTGTCTGTT--GCCGTAGG----TG-AAGAAA--CTTG-TCTTCCATTCT
Reference ( family-6572 ) : ACCCAAAAGTGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATNCTATACTTAGAATTAGTTTT-ATCTTGCTCNTTG---ATAAGTTCTATTACATT-AA-TGGTATGCAGNAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGNAATATGAGTATA---TACAACGATGCATGGTTT--GATG---GCAGTCAAACAAGAAAATTA-CAA-CAACAAGGCTCAATGTTCACCTTAANTG-TCTCCTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGTCT--------GCC-TC--CTCTTTGGACATCCTTG-AGAACTCTCTGCCTTTTA-GA-GACCANTTCCACATGCT-GGCTGTA--C--CTGGGGA-AAC-TTTGGATTAAAGGTAATTTCGGA-TT-TGTTTCTTCGTGT---TG--TNTTCA-CGA---CACCT--TTTGC-C--GCCAGC-C---A-CGCCTCACCTG--TTCGG--TGGTCAGGCCGGTCTTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTG-----G---TACCA-A--T-GATTTAG--AATATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACGTTTCCCTCTTAATGGTCTC-C---AAACTTAATTGGATGCTGGTTTC-C--AG-NGA--TAGACAGGGT-GT--TTGAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTG-TTAAGTACATTG----GT----TCCATGCACATGAA-ATTCTTGCTCTCT--T-ATC--C-TATCTTTCTCTTGAGGGNATTGCTTTGT-TGAA-TTT-CGTCTGGTG-T-GTTA-CA--AA-TATTTCC-TCTCCTCT-AATAG-GACTGTT-GTCACTA----AGGC--TA-AAATGGGA-TGAGTTGATAGA-GT-T-GAAGGC-AGTTTC---------ACGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGG-----------------A-------AGCAG--GT------TGG--GC-AG--------ACGTTGGGAGAA-------ACGCTATGATCACTGGGG--GAGGCTGT-AGGCAACACA-GAAGCAGGTGGGCAGGCA-TCGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TCTG-T-GA---AAGCANCAA-GCATCTTCT-GCGGTAA-TTCCGACTCA-TT-------CACTGGCCTGNTTGAGGATGTCCAC-ACCACT-GTCCACTTGCAATGAC-GG--CTTG---GTTG-GAGTTAAT------CGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCGCTG-AAGCTG-AGATGAGAACT-GGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATCGGTGAGAAACGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--CGAGGAAGAA-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGGCAA-A-TACACCTATTGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATGA-GTTTT-GGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-ATT-GTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--GGAAGGC-TTGA-T-GA-AN-G-CAAT-CCT-CTGCAAGG-ACATCCT--GGAGCTNGCTGTAAATGGGATTTCTCTGCATTTGGTT-GAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG-CTGGAATGTGGGTGTTTTGACTGGTCTGTTTGGGAAAGC-GATGGNTGGAGG-TGAGAAGGTATTC--T--CCTCTATCT-GT-NATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCC-GTAGTTGTTGAGGC-GAA-CTT-T------GGT-AA-GTGCTGTACATCTGAGTGGC--AGG-A-TACTGCTGCT-GCATG-TA--------CTTCT-GATCTGTACTG-TAGAAGGCC-T-GGGTAAC----TCTGTT-GGA--T--GTGTCTGTT--GCCGTAGG----TG-AAGAAA--CTTG-TCTTCCATTCT
gi|1 : ACCCAAAAATGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATGTTATACTTAGAATTAGTTTT-ATCTTGCTCTTTGGTAATAAGTTCTATTATATT-AAATGGTATGACGTAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGTAATATGAGTATA---TA--ATGATGCATGGTTT--GATG----CAGTCAA-CA-GAAAAACA-CAA---ACAAG-CTCAATGTTCAC-TTAATTA-TC--CTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGT-T--------GCC-TC---TCTTTG-ACATCCTTG-AGAACTCTCTGC-TTTTA-GA-GACCATTTCCACATGCT-GGCTGT---C--CTGGG---AAC-TTTGGAT--AAAGTAATT-CGGA-TT-TGTTTCTTCGTGT---TG--TTTTCA-CGA---CACCT--TTTGC-C--GCCAGCAC---AGCGCTTCACCTG--TTCAG--TGGTCAGGCCGGTTTTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-GGTTGTC-CAGG--TGGG-TCTC-----G---TACCA-A--T-GATTTAG--AATATCACGAGAC-TT-TGAGGCC-TGGCTTGGAGA--GCA-G-ACATTTCCCTCTTCAT--TCTC-T---ATACTTAATTGGATGCTGGTTTC-C--AG-AGA--TAGACAGGGT-GT----GAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGG-TCAGTCCTGACAGCCT-CACCAGCTCGT--CTAC--CGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAGTTG-TTAAGTACATTGTGAAGT----TCCATGCACATGAA-ATTCTTGCTTTCT--TCATC--CCTATCTTTCTCTTAAGGGGATTGCTTTGT-TGAAATTT-CGTTTGGTG-T-GTTAGCA--AAATATTTCC-TCTCCTCT-AATAG-GACTGTTTGTCACTA----AGGC--TA-AAATGGGA-TGAGT-GATAGA-GT-T-GAAGGC-AGTTTC---------ATGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGG-----------------A-------AGCAG--GT------TGG--GC-AG--------ACGTTGGAAGAA-------ACGCTATGATCACTGGGG--GAGGCTGTTAGGCAACACA-GAAGCAGGTGGGCAGACA-TTGG--GAGAAA-CAC-TATG-ATCACTG-GG-GA-ACATATTTT-TCTG-T-GA---AAGCATCAA-GCATCCTCT-GCAGTAAATTCC-ACTCAATT-------TACTGGCCTGATT-AGGATATCCAC-ACCACTTGTCCACTTGCAATGACAGG--CTTG---GTTG-AAGTTAAT------TGCAGGAT-CCACT-C-CTG-TTCAGAGG-AGGCACTGCTG-CCACTG-AAGCTG-AGATGAGAACTTGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATTGATGAGAAATGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--TGAGAAAGA--TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AA--GCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAG--AA-A-TACACC-AT--GACTTTGAAGCATATTGGGA-TTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATGAAGTTTT-GGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-ATTTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--AGGAGGC-TTGA-T-GA-ACTG-CAATTCCT-CTGCAAGGGACATCCT--GGAGCTTGCTGTAAATGGGATTTCTCTGCATTTGGTT-AAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG--TGGAATGTAAGTGTTTTGACTGGTCTGTTTGGGAAAGT-TATGGGTGGAGGTTGAGAAGGTATTC--T--CCTCTATCT-GT-GATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCT-GTAGTTTTTGAGGC----------------GGT-AA-GTGCTGTACATCTGATTGGC--AGG-A-TACTG-TGCT-GCATGTTA--------CTTCT-GATCTGTACTA-GAGAAGGCC-T--GGTAAC----TATGTT-GGA--T--GTGT-TGTT--GCCAT-GA----TG-AAGAAA--CTTG-TCTTCCATTCT
gi|10 : TGGTCT-GGGTCCAGA-GGGTGAAG--GG----CGTTGA-TTGA-AG-G-CAAG-TCC-CTGCAAG--ACATCCCTGGGAGCTGGCTGTAATTTGGATTGCTCTGCATTTGGTTTGAAGAACTGGGAAGGG--GGA--GC-TTAGTGGCTGTTCTTGTATGTTCTGTGGACTGGAATGTGG-TGTTT-GGCTGCTCTGTT-GGGAAAGT-GATGGGTGGAGG-TGAGAAGGTATTC--C--TCTCTATCT-GT-GATCTGTGGGTAAAGACAGGGAAAGCTCTTGTCC--TAGATGTTGAGGC-------T-T------GGT-AACGTGCTGTACATCTGAGTGGC--AGGCATTACTGCTGCT-GCATG-TA--------CCT-T-GATCTGTACTGTTAGAAGTCTGT-GGGGAAC----TCTGTTGGGA--T---TGCCAACT--GCTGTAAGGCCTTG-AAGAAA--TTTGATCTTCCATTCTccag
gi|11 : A-TGAATCCGTAAA-GT-T-GAAGGC-AGTCTC---------ACATTGAGT--T---A-TATCCAGC-CCCTGAAACACTGGAGCTGAAGCTGTAGGGTA-------GGCAG--G-------TGG--GC-AG--------ATGTCGGGAGAA-------ACACCGTAATCACTGGGG--G
gi|11 : CACTGGAGCTGAAGCTGT-AGG----GTA-G--GCAGGTGGGCAGATG-TCGG--GAGAAA-CAC-CGTA-ATCACTG-GG-GGGAGATATCGC-TTTG-AAGA---AAGCTGCAA--CATCTTCT-GCTGTAA-TTTCGAATAA-GT-------CACTTTCCTGTTTGATGCTGTCCAC-ACCACT-GTCCACTTGCAATGG-------TTG---ACTG-GAGCCAATGAAATTCACAGAAT-CCTTTTC-CTG-TTCAGAGG-AGGCACTGCTA-CTGCTA-CTGCTG-CGAGGAGAACT-GGAGGGGGAAATGATT-TGTGATCTCTGTTGCTGTGATAAAGCAGTGATGACATTCAAGTCCGGTGTATTGGGGAGAACCGGAGCA------TGTTTGgagatatcgctttgaagaaagctgcaacatcttctgctgtaatttcgaataagtcactttcctgtttgatgctgtccacaccactgtccacttgcaatggttgactggagccaatgaaattcacagaatccttttcctgttcagaggaggcactgctactgctactgctgcgaggagaactggagggggaaatgatttgtgatctctgttgctgtgataaagcagtgatgacattcaagtccggtgtattggggagaaccggagcatgtttg
gi|12 : atgaatccgtaaagttgaaggcagtctcacattgagttatatccagcccctgaaaCTGCTGTGAGACTC--G-CTGGA--TGAGAAAGA--TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGG-AA-A-TACACCTA-TGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTG-TTG-AATGA-GTTTT--GT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-ATT-GTAGTCGTGGGTTAT
gi|13 : TAGCGACTGTT-GTCACTATCCTAG-C--TA-AAAGGGGA-TGAGTGAATAGATGTCT-GAAGGCGAGTTTCCCTCGTTTAACAT-GAGTCTG---G-A-TCTGAC-TCGTGAA-CACTG------------------A-------AGCAG--GT------GGA--GCGAG--------ACGTTGGAAGAATCAAATCGCTCTATGTTCACTGGGGT-GAGGCTGT-AGGCAACACA-GAAGCA-GT-GGCAGG-A-TCAGTTAAGAAACCACTTATG-ATCACTGAGG-GG-ACATATTTC-TC-A-T-GATCGAAGCGTCAGTGCATCTTCT-
gi|14 : TAATTGGATTACGGTT-C-C--AG-TGA--TGGACAGTGTTGTAGCTGAAATC-------------TGCTTGGGC-CT-CAACT-TGTT-------TTGCAATTCAGTC-----------CA--AG---------A----GTTGTCAGTGG--T-GTGG-TAC-AGACGTGGGGCGGGCA-CCAATTG-TTCAGTACATTG----GT------------CA-GAATATCCATCCT---------TC--C-AATCTTTCTCGTGAGGGATTTACTTTGC-TGAA-CTT-CCCCTGGTGTT-GTAA-CA--AG-CATTTCCTTCTCCTCTGAATGG-Gtgcag
gi|15 : atgAAAGTGGAATGAAATGAAAGGAAAATTAAAAAAATCCAAGAAACGACATTCAACATTTAGAATTACTTTTTATCTTACTTGTTG---ATAAATTCTTTTACA---AA-TGAGATGCAAAAATTCAGTATGAT------ACATGAGCACTGATTTGATTGTA--ATGAATTA-GAAATATGAGTATA---TACAATAATACATGGTTT--GATGCATGCAG
gi|16 : ACCCAAAAATGGAATGAAA---GAGGAA-G---AAATAACCGAAGAAGCATTATGTTATACTTAGAATTAGTTTT-ATCTTGCTCTTTG---GTAAGTTCTATTATATTAAA-TGGTATGCAGTAAATAAGTATGATAATGATATATGATCAATGATTTCAATATATGATAAAAT-AGTAAT-TGAGTAatagaaca
gi|17 : aaaacGTTCTCTAAT-ATT--C-TTTCTT-CTCTTGAGGATAT-ACTCT-C-TGCC-TTC-CACC-GGTG-TTGTT--CATTGA-TATTTCC-TCTCCTCT-AATAG-GA-TGTA-GTCACCA----AGGCTGTA-AATTGAGATTTAGTTGAT
gi|18 : ttagtccaggcccatgaaaagttgttctgtttcttgattccggaGAAAGC-GGTGGCTGGAGG-GGAGAAGATATTC--TGTCCTC---CT-GT-TATCTGTGGATAA--GCTGGGAAA-CTC-TGGCC-GTAG-TGCTGGGGCTGAA-CTT-TTG----GGT-AA-GTGCTGTACATCTGAGTGGC--tca
gi|19 : GGAGCAAGAGATTGTTTGCTGTAAGACCC--A-ATGGAAACAAGGGAGAACTGTCGAA--G----GAATGGATCCTGAG-GATGGTACTCGCATGTGG-GT--GAG-TCCAGTATT--ATTG
gi|2 : AAGTGGAATTTAA---GGGGAAA-----AATAACCAAAGAAGAATTATCCTATACTTAAAATTAGTTTT-ATCTTGCTCATTG---ATAAGTTCTA--ACTTT-AA-TGATGTGCAGGAAATAAGTATGA------TATATGACCAATGATTTCATTATG--AT-AAATAAGGAATATGAGTATAAGGTACAACGATGCATGGTTTTGGATG---GCAGTCAAACAAGAAAATTACCAACCAACAA-GTTCAATG-TCA-CTTAAAT--TCTCCTCTTCCAACATGTTGAGACATTCTAAGGGCATCATCTAGTCT--------GCCTTC--CTCTTT-GACATCCTTG-AGAACTCTCTGCCTTTTA-GAGGACCTATTCCACATGCTAGGCTGTAACT--CTGGGGACAACTTTTGG--TAAAGATAATTCGGGA-TTATG-TTCTTCGTGG---TG--TTGGCACCGACTTCATCTTATTTGCACAAGCCAGC-C---G----CTCACCTGCTTCCAG--TGGTCAAACC-GTCTTC--ATGCGCC-----AA-CTCTTTTTTCTGCTCTTC-------AGTAGGG-TATGG-G-TTTTCGCAAGATTTGC-TTTG-----G---TACCA-ACTT-GCTTTAGGAAATAT-ACAACAT-TTGGGAGGCCATGGGCTGGAAAAGGCA-GAACGTATCCTTATTAATGGTCTT-C----AATTTAATTGGATGCTGGTTTCGC--TG-TGACTTGGACAGGGT-A---TTGAAA-CACCG-CACTCTTTTG-TTGGCCAAT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCTCCACCAGCTCGTGCCTACTTCGGTGTCGGTGGGATAATGGGTACTGGGTGTGGCTCTGGTATCCAATTG-TT-AGTACATTG----GT----CTCAT-C---------------CTCTCT--T------------TTTCTC-TGA-GGTATTGCTTGGT-TGGA-TGT-CCTCTGGTG------------------------------T-AATAG-GACTG-A-GTCACTG----TGGC--TATAAATGGGG-TGAATTGATAAA-GT-TGGAAGGC-AATTTC---------ATGTTGAGC--GTAAGTAATCGAACATGGTGAAGCACTGG-----------------GGCTGGATAGCTGTAGTGCAACATAGAAGC-AGGTGGGCAGACTTTGGGAGAA-------ACACTATGATCACTGGGG--AAAGCTGT-AGGCAACACACGAAGCAGGTGGGCAGGCACTTGG--GAGAAA-CAC-TATGAATCACTG-GGAGG-AAATATTTCAACTG--------AAGCAAC-A-GCATCTTTTCGCGGTAA-TTCCAACTCA-TTCTTCCCCCACTGGCCTGTTTGAAGGAGTCCACAACCACT-GTCCACTTGCAATGAC-GGACCTAG---GTCGTGTCTTAAT------CGCAGAATGCCACTTCACTGTTTCAGAGGAAGGCACTGCTGCCCACTGAAAGGTGAAGATGAGAA-T-GGTGGGAGAAATGGTTGGGTGATTTCTGTTTC-------AA-----------------GTCAGGTGTATCAGTGAGAAAC--AGCAG-----CATCTG--GT--GACTTGAG-CTTGA--C--CGAAG-A-TGTCAGA--GGAGAAAGTGGAATCAGAGCGAAGATGC-----TATGGAGT--G-GCTCCA-TATT--GTTGAAGGGCA----AGAGGTTGGTTATATAA-CC-------TGAG--GAAAAC--------ATGA--TTGA---------------TGCA-GCAAGA-TACATCT-TTGGATGTTGAAG-ATATT-GGAATTGTAGA-GAGAAAGGCCCAGGAATTTGGCAAGATTCTGAGAGCAGGCTCTGT-GTTGGG-TTGTG-TGTTGG-GATGA-CTTTT-GTG--GGATCTGG-AATTT-TGCTGGGAAGCAGACCGCTGTTGTATCCAATTGTTAATT-GTTATCATGGGTCACAGTCTGGGAT---CAGGGGTGGAAGTGGAAGGC-TTGATT-GA-AG-GCCAATGTCT-CTGC
gi|20 : agaacacctTGGAGCACTGG-----------------GGC-----AGCAGCTGTGGGG--TAG--GC-AG--------ACGTTGGGAGAA-------ACctgggtaagggg
gi|3 : tgaattaggactaaccatctgtTGCTGTGAGACTT--GGCTGAA--CAAGGCGGAA-TGTCTGAAGG----AATCGGATCCTGAG-GACGG-AC-----TATGG-GTGGG-G-TCCA-TATTGGGTTGAGA---AGCAGAGAGGCTGGTTATATGATCCATATGGTTGAGCAG-AGGCTGGTTATTATGAGTCTGAGGAAACATGATTTGATGCATGCAA-ATTACACCT-TTGGACTTTGAAGCATATTGGGCATAGTAGATGAG-AAGGCCC-GGAATATGGC-AGATTCTGAGACT-GGCTCTGTAGTTGGGTTTGGGTTGCTGGTACTGA-CTTTTAGATTGGGGTCTGGAAATAACTGCTAGGAAA-GAG-CAATGCCGTATCC-ATTATC--TT-CCA-------GTTA----CT-GGAT---------TGGA------------TG--T-GACAG-G-CATTACCTACCGCAAGG-ACATTCT--GGAGCTGGCTGAAAATGGGATTCCTCTGCATTTGGTTGGAAGAACTGG-GTGGATTGACAGGCTTTCATGGTTGTT-TTGT-TGTGCT-TGG-CTGG-ATGT-GGTG-TTTGACTGG-CTGTTTGGAAAAGCGGGTGGCTGGAGG-GGAGAAGAT-TTCTGT--CCTGCACTT-GTATATCTGTGGATAA--TCTGGGAAACCTC-TGGCCAGTAGTCGCTGGGGCTGAA-CTTATTTTAGGGGTAAA-GTGCTGTAACTCTGAGTGGCAAAGC-A-TACTGCTGCTAGC-TG-TACACAAAAGCATCTGGATATGTTCTG-TAGAA-ACC-TGGGGTAACACTATCTGTT-GGA--T--G-GTCTGTTGAGGCGAAGG----TGTAAGAAAGTGTTG-TATTCC
gi|4 : tTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTC-----G---TACCA-A--T-GATTTAG--AATATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACATTTCCCTCTTCAT--TCTCTT---AAACTTAATTGGATGCTGGTTTC-C--AG-AGA--TAGACAGGGT-G---TTGAAA-CACCG-CACCCTTTTG-TTGGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGCAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAGTTG-TTAAGTACATTG----GTGAAGTCCATGCACATGAA-ATTCTTGCTTTCT--TCATCCTC-TATCTTTCTCTTAAGGGGATTGCTTTGT-TGAA-TTT-CGTTTGGTG-T-GTTAGCA--AA-TATTTCC-TCTCCTCT-AATAG-GACTGTT-GTCACTA----AGGC--TA-AAATGGGA-TGAGTTGATAGA-GT-T-GAAGGC-AGTTTC---------ATGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACT-G-----------------A-------AGCAG--G-------TGG--GC-AG--------ACGTTGGAAGAA-------ACGCTATGATCACTGGGG--GAGGCTGT-AGGCAACACA-GAAGCAGGTGGGC---CA-TTGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TCTGAT-GA---AAGCAC--A-GCATCTTCT-GCAGTAA-TTCC-ACTCA-TT-------TACTGGCCTGATTGAGGATATCCAC-ACCACT-GTCCACTTGCAATGAC-AG--CTTGTTAGTTG-AAGTTAAT------TGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCACTG-AAGCTG-AGATGAGAACT-GGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATTGATGAGAAATGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--TGAGAAAG-A-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGG-AA-A-TACACCTA-TGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTG-TTG-AATGA-GTTTT--GT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-ATT-GTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAA--GGAAGGC-TTGATT-GA-CT-G-CAAT-CCT-CTGCcatgcattcatcagagaaggtgcctgccacaactgaagaacaaggagcttagacaagtgcaataccaatatttgatgtgtatgaagaagtttgttgtctcagaattctgagcacccaataatttcccataggaaaggatgctttcggtggtaaggttatgatataaaagaaggagcacttgactgagactcagtacataagtttataagcgcgctggtggtgggcatgctccaacattctgagactaactcagcatggccaaacttcctcgcatccacgctcttccccatcacgtagtgccagtaattttgcaatccatcgacagaacccagggtttactttgtgttttctaaaaaattagtcaggaaataatcacttcagaactagcactacacactatgataaacacacaatcggataataactttataagtggaaagagtgggaattaggtcactgtaattgtgtaatgattagtctttaatttggagtatgggacagcgagcaaaggt
gi|5 : AGTCT-GGAT---GA-GGGTGGAA--GGAAGGC-TTGA-TTGA-CT-G-CAAT-CCT-CTGCAAGG-ACATCCT--GGAGCTTGCTGTAAATGGGATTTCTCTGCATTTGGTT-AAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG-CTGGAATGT-AGTG-TTTGACTGGTCTG-TTGGGAAAGT-TATGGGTGGAGG-TGAGAAGGTATTC--T---CTCTATCT-GT-GATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCT-GTAGTT-TTGAGGC-G--------------GGT-AA-GTGCTGTACATCTGATTGGC--AGG-A-TACTGTTGCT-GCATG-TA--------CTTCT-GATCTGTACTA-GAGAAGGCC-T--GGTAAC----TATGTT-GGA--T--GTGTCTGTT--GCCAT-GA----TG-AAGAAA--CTTG-TCTTCCATTCT
gi|6 : AGTCT-GGAT---CA-GGGTGGAG--GGAAGGC-----------------AAT-CCT-CTTCAAGG-ACATCCT--GG------TTGTAAATGAAATTTCTCTGCATTTGGTT-GAATAACTGG-AAAAA--AGAAGGC-TTCATATTAGTT-TTGC-TGTTCTGTTG-CTGGAATGT-GGTG-CTTGACTTGTCTG-TTGTGAAAGT-GATGGCAGGAGA-TGAGAAGATATTC--T---CTCTATTTGGT-TACCTGTGGACAA--GCAGAGAGC-CTC-TGTCC-GTA---------GC-GAATCTC-TA-----GGT-AA-GTTCTGTACATC-----------AG-A-TGCTGATGCT-TCGTG-TA--------CTTCT-TATGTATTCTG-TAGAATTCC-C--TGTAAC----TCTGGG-GGAGGTAGGTGTCTGTT--GCCAC-GG----TG-AAgaagagcctgtacagtcgaacaacgagcttaagtctccaatatttgatttatgaagaatttttggagtctcaattcagcataaatgatgattttcaatgaaggatgctttgaattctgatttgatgatagcttgtacatggagctggcttcagtccagtatatatagctggtggtggacatgttctctattacctgagactctcgacttcatgccaacctcctcctcactcctctccatgccagccattgcaatccatcctcgacattgttttccttgtgcagtatatcaatatacatccagaaaaattgaattcatagtaatttctgacaattacacttatcaaattatgtttacagtgcagttcagctttaacagtgggaatgggacacctgtaattgggtaataatgattagattaattggataatggaggagcccaggtgt
gi|7 : AATTA-CAA--AACAAGGCTTCATGTTCACCTTA-GTGCTTTCCTCATCCAACGTAT-GA-ACATTC-AAGGACAATGT--GGTTTCTTACGTGGCT-TCACTTCTTTGGATATCCATGTAGA--CCTCTGCTTTTCAAGA-G-CCACTTACACATGCT-GGCT-TA--CTGCTTTGG--AAC-TTTGGATTAAACGTAATTTCGGACTT-TG-TTCTTC-TGTTTATGTCTTTTCA-CGA---CACC---TTTGCTC--GC--GC-CCAGA-CGTCTCACCTG--TTCAGTTTGG-CAGGCCGGT-TTCTAAT-T-CCTTCATATGCTCAT-CTTCTGTGATTCCTCGCTTTGTGGGGATGGAGTG-TTGTC---AG--TGGGATCTGCACCAGCTTTACCACA--TAGATTTAGCAAGTATC-CGAGAC-TT-TG-GGCCAT-GGCTGGAGA--GCACG-ACATTGTCCTCTCATTG--CTC-CGTTAAACTTAAGTTGATGCTGGTTTC-CCAAGCAGA--TAGA-AGGGT-G---TTGAAA-CACCGCCGCCTTTTTGTTTTG-C-ATGCCACTCTGTTCAC-TGTTTGC-GGTCAGTCTTGACAGCCacattccttgaagctgaggcctgttacagtatcactattgtttatgattacagaggtaaagtgaacaaacactcagcatcaggaattttgtacgtcctctaccatcgataggcttttgatgacttacttgggactaagctcactcagagagcaggatgagcaccagtcgaacagtatatatagcgtgtgttggtacaactctctattacctgagactctcaacttcatcctttgtccttctcatactccacccattagtgccagtaaatctgacacaatacctccacaagatgtcttctttagtgtattatgagcaaaattattagtcaatattataacttcaaacattaattacaacttatgtgcaggaatttgtttatataagatggccccatgttcagctttatagagtgacccgcggcaatcaaacacctcgttaagctacatgcgtgtagattaattgggatggagccaaggaattgg
gi|9 : CTATTGTTC-------TGTGAGG-TAGGG-G-TTGTC-CAGA--TGAG-TTTG-----G---TATCA-C--T-GATTTAG--AACATCG-GCGACATT-GGAGGCCATGGGCTGGAAA--GCA-G-ACGTATCCTTCTTAATGGTCTT-C---AA-TTTAATTGGATGCTGGTTTC-C--AG-TGA--TTGACAAAG--GTA-TTGAAACACCCG-CACC-TTTTGTT-GGCC-AT-C-ACT-TCTTCACTTGTTTGCGGGTCAGTCCTGATAGTCT-CACCAGCTCGT--CTACTTCGCCGCCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTGTTTAAGTACATTG----GT----TTCAT-C---------------CTCTCT---------------TTTCTCTTTGAGATATTGCTTTGTATGAA-TGTATGTCTGGTG------------------------------T-AATAG-GACTGTT-GTTGCT-----AGGC--T-------------AGTTGGTAGA-TT-T-GAATGC-AATTTC---------Agt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TATACAGTGGAACAAAGTGCTGAAGAAGGTCTCCAATGTTTGATGATGAAGGCTTCAGTTCACTATGCAGCAATTCTGGAAATGTCTTTGAATTCTTGTTGAGTGATAGTTATGGTAATGGGACAGAGCCATCCAGGACAGTATATATAGCTGGTGGTGGACATGTTCTCTATTACCTGAGACTCCTGTCATGCCAACCTCCTCCTCACTTCTCTCCATAGAGCCAGCAATGGCAGTTCCTAAGATTGTTTTGGTTGTGCAGTGTATCCAGTATGCATCCAGCTAAATTAAATTCCTAGTAATTTGTTACCATGACACTATCAAAACATGTATAGAGCAGGCCAGCTTGTACAGTTAGACTTCCATACCTATAATTGGGTAATGATTAGAGCCTGTTGACAATTGAGGAGCCCAGGTGAGA
Unaligned ( gi|21 ): GTGGGAATTAGGCACCTGTAATTGTGTAATGATTAGTTTAATTGGATAATGGAGGAGCAAAGGT
Alignments
lowQualScore : 111 22222 1 111 111 1 3333333 11 222 11 3333 1 1 1 2222 11 11 22 1 22 5555555555 222222 11 1 1 1 1 1 333333 222 1 111 1 1 1 1 222 11 1 222 222 4444444444444444444 11 11 1 11 111 22222 2222222 11 222222222 1111 2 11 22 111111 3333 1 11 1111 999999999999999999999999999999999999999999999 5555555555555555 11111 222222222 22222222 8888888888888888888888888888888888888888 22222222 2222222 11 11 22222222 1 1 1 3333333 1 1 222222 111 1 222222 1 1 1 1 1 1 1 1 1 333333 1111 222 1111 11111 22222222 2222222 11 22222222 555555555555555 222 2222 1 222222 111111 111 2222222222 1 11 1 11 2 1 222222 1 111 8888888888888888 22222222 222 1111 1111111 11 2222222 111 1
lowQualScore : 777 77777 0 1 0 1 777 3 000 0 1 1111111 0 33 7 66 1 3 333 6 0 88 0000 5 5 7 3 2222 33 7 33 7 1 55 7 7 6 3 00 1111111111 444444 33 3 7 2 3 3 7 1 3 6 999999 555 3 333 1 5 3 3 3 6 333 88 3 333 555 4444444444444444444 88 88 7 6 2 33 444 55555 2 6 6666666 8 8 8 8 11 8 444444444 4444 8 8 8 3 3 8 88 0 0 11 8 8 1 0 00 999999 0 6 99 77 99 0 6 3333 7 3 6 5 9 2 6 6 2 6 3 1 2 1 8 11 66 5 8 0 8 8 5 7777 333333333333333333333333333333333333333333333 3 1 1 6 6 6 1 9999999999999999 6 6 5 6 55555 99 6 5 3 6 6 6 6 666666666 6 11111111 0 8 1 1111111111111111111111111111111111111111 99 6 44444444 1111111 1 55 8 8 0 0 44 8 11 8 8 8 8 8 8 8 0 66666666 88888 8 4 0 9 0 2222222 1 2 0 0 0 0 222222 777 0 888888 0 3 0 0 0 0 2 0 0 2 0 0 3 0 2 2 2 0 2 111111 1 99 6 0000 111 99 4444 6 66666 6 99 6 6 6 99 22222222 0 0 6666666 11 8 99999999 88 000000000000000 000 8 8 2222 0 0 8 8 8 8 1 0 0 8 0 3 0 8 8 333333 8 8 8 8 88 8 3 1 5 444444 111 3 77 2222222222 5 7 5 8 11 0 3 6 8 11 0 8 0 8 8 8 0 8 0 0 0 0 0 77 1 6 111111 1 6 77 99 3 6 6 111 4444444444444444 6 6 2 99 8 8 8 8 3 8 99999999 8 1 88 1 666 7777 8 3333333 11 7777777 8 444 0
lowQualScore : ... ..... . . . . ... . ... . . ....... . .. . .. . . ... . . .. .... . . . . .... .. . .. . . .. . . . . .. .......... ...... .. . . . . . . . . . ...... ... . ... . . . . . . ... .. . ... ... ................... .. .. . . . .. ... ..... . . ....... . . . . .. . ......... .... . . . . . . .. . . .. . . . . .. ...... . . .. .. .. . . .... . . . . . . . . . . . . . . . .. .. . . . . . . .... ............................................. . . . . . . . ................ . . . . ..... .. . . . . . . . ......... . ........ . . . ........................................ .. . ........ ....... . .. . . . . .. . .. . . . . . . . . ........ ..... . . . . . ....... . . . . . . ...... ... . ...... . . . . . . . . . . . . . . . . . . . ...... . .. . .... ... .. .... . ..... . .. . . . .. ........ . . ....... .. . ........ .. ............... ... . . .... . . . . . . . . . . . . . . . ...... . . . . .. . . . . ...... ... . .. .......... . . . . .. . . . . .. . . . . . . . . . . . . . .. . . ...... . . .. .. . . . ... ................ . . . .. . . . . . . ........ . . .. . ... .... . ....... .. ....... . ... .
lowQualScore : 555 22222 2 0 0 0 555 2 222 0 0 5555555 8 88 0 55 0 2 333 7 7 33 0000 5 5 3 3 7777 33 3 33 3 0 33 3 3 7 3 00 3333333333 777777 33 3 3 0 3 3 3 0 3 7 333333 000 3 777 0 0 3 3 3 7 333 33 3 333 777 7777777777777777777 33 33 3 7 0 88 000 00000 5 5 0000000 0 0 0 0 00 0 000000000 8888 0 0 0 4 8 0 66 8 8 00 0 0 4 6 00 222222 8 7 22 77 22 3 7 0000 7 2 7 2 8 5 7 7 5 7 2 0 5 0 0 00 22 0 0 8 0 0 6 0000 333333333333333333333333333333333333333333333 2 0 0 7 7 7 0 5555555555555555 7 7 7 7 88888 22 7 7 6 7 7 7 7 777777777 4 22222222 8 0 0 3333333333333333333333333333333333333333 22 7 22222222 7777777 4 88 0 0 8 8 66 0 00 0 0 0 0 0 0 0 8 88888888 66666 0 2 0 0 0 5555555 0 5 2 8 0 0 888888 555 0 888888 0 2 0 0 0 0 0 0 0 5 0 0 2 2 5 5 5 2 0 000000 0 22 7 8888 333 22 2222 7 77777 7 22 7 7 7 22 00000000 8 8 0000000 00 0 00000000 88 000000000000000 000 0 0 8888 8 6 0 0 0 0 4 8 8 0 8 6 6 0 0 000000 0 0 0 0 88 0 2 7 7 444444 999 6 11 4444444444 7 1 7 0 00 8 8 0 0 00 8 0 6 0 0 0 8 0 4 8 8 6 8 33 0 7 222222 7 7 77 22 3 7 7 777 5555555555555555 7 7 5 22 0 0 2 0 8 0 00000000 0 4 66 0 888 0000 0 8888888 00 0000000 0 000 0
consensus : ACCCAAAAGTGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATNCTATACTTAGAATTAGTTTT-ATCTTGCTCNTTG---ATAAGTTCTATTACATT-AA-TGGTATGCAGNAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGNAATATGAGTATA---TACAACGATGCATGGTTT--GATG---GCAGTCAAACAAGAAAATTA-CA-A--AACAAGGCTCAATGTTCACCTTAANTG-TCTCCTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGTCT--------GCC-T--CCTCTTTGGACATCCTTG-AGAACTCTCTGCCTTTT-AGA-GACCANTTCCACATGCT-GGCTGTA--C--CTGGGG--AAC-TTTGGATTAAANGTAATTC-GGA-TT-TGTT-CTTCGTGT---TG--TTTTCA-CGA---CACCT--TTTGC-C--GCCAGC-C---GCGCCTCACCTG--TTCAG--TGGTCAGGCCGGTCTTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTG-----G---TACCA-A--T-GATTTA-G-AA-TATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACGTTTCCCTCTTAATGGTCTC-C---AAACTTAATTGGATGCTGGTTTC-C--AG-NGA--TAGACAGGGT-GT--TTGAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTG-TTAAGTACATTG----GT----TCCATGCACATGAA-ATTCTTGCTCTCT--T-ATC--C-TATCTTTCTCTTGAGGGNATTGCTTTGT-TGAA-TTT-CGTCTGGTG-T-GTTA-CA--AA-TATTTCC-TCTCCTCT-AATAG-GACTGTT-GTCACTA----AGGC--TA-AAATGGGA-TGAGTTGATAGA-GT-T-GAAGGC-AGTTTC---------ACGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGG-----------------A-------AGCAG--GT------TGG--GC-AG--------ACGTTGGGAGAA-------ACGCTATGATCACTGGGG--GAGGCTGT-AGGCAACACA-GAAGCAGGTGGGCAGGCA-TCGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TCTG-T-GA---AAGCANCAA-GCATCTTCT-GCGGTAA-TTCCGACTCA-TT-------CACTGGCCTGNTTGAGGATGTCCAC-ACCACT-GTCCACTTGCAATGAC-GG--CTTG---GTTG-GAGTTAAT------CGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCGCTG-AAGCTG-AGATGAGAACT-GGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATCGGTGAGAAACGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--CGAGGAAGAA-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGGCAA-A-TACACCTATTGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATGA-GTTTT-GGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-ATT-GTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--GGAAGGC-TTGA-T-GA-AN-G-CAAT-CCT-CTGCAAGG-ACATCCT--GGAGCTNGCTGTAAATGGGATTTCTCTGCATTTGGTT-GAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG-CTGGAATGT-GGTGTTTTGACTGGTCTGTTTGGGAAAGC-GATGGNTGGAGG-TGAGAAGGTATTC--T--CCTCTATCT-GT-NATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCC-GTAGTTGTTGAGGC-GAA-CTT-T------GGT-AA-GTGCTGTACATCTGAGTGGC--AGG-A-TACTGCTGCT-GCATG-TA--------CTTCT-GATCTGTACTG-TAGAAGNCC-TGGGTAAC----TCTGTT-GGA--T--GTGTCTGTT--GCCGTAGG----TG-AAGAAA--CTTG-TCTTCCATTCT
Reference ( family-6572 ) : ACCCAAAAGTGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATNCTATACTTAGAATTAGTTTT-ATCTTGCTCNTTG---ATAAGTTCTATTACATT-AA-TGGTATGCAGNAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGNAATATGAGTATA---TACAACGATGCATGGTTT--GATG---GCAGTCAAACAAGAAAATTA-CA-A--AACAAGGCTCAATGTTCACCTTAANTG-TCTCCTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGTCT--------GCC-T--CCTCTTTGGACATCCTTG-AGAACTCTCTGCCTTTT-AGA-GACCANTTCCACATGCT-GGCTGTA--C--CTGGGG--AAC-TTTGGATTAAANGTAATTCCGGA-TT-TGTT-CTTCGTGT---TG--TTTTCA-CGA---CACCT--TTTGC-C--GCCAGC-C---GCGCCTCACCTG--TTCAG--TGGTCAGGCCGGTCTTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTG-----G---TACCA-A--T-GATTTA-G-AAATATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACGTTTCCCTCTTAATGGTCTC-C---AAACTTAATTGGATGCTGGTTTC-C--AG-NGA--TAGACAGGGT-GT--TTGAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTG-TTAAGTACATTG----GT----TCCATGCACATGAA-ATTCTTGCTCTCT--T-ATC--C-TATCTTTCTCTTGAGGGNATTGCTTTGT-TGAA-TTT-CGTCTGGTG-T-GTTA-CA--AA-TATTTCC-TCTCCTCT-AATAG-GACTGTT-GTCACTA----AGGC--TA-AAATGGGA-TGAGTTGATAGA-GT-T-GAAGGC-AGTTTC---------ACGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGG-----------------A-------AGCAG--GT------TGG--GC-AG--------ACGTTGGGAGAA-------ACGCTATGATCACTGGGG--GAGGCTGT-AGGCAACACA-GAAGCAGGTGGGCAGGCA-TCGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TCTG-T-GA---AAGCANCAA-GCATCTTCT-GCGGTAA-TTCCGACTCA-TT-------CACTGGCCTGNTTGAGGATGTCCAC-ACCACT-GTCCACTTGCAATGAC-GG--CTTG---GTTG-GAGTTAAT------CGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCGCTG-AAGCTG-AGATGAGAACT-GGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATCGGTGAGAAACGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--CGAGGAAGAA-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGGCAA-A-TACACCTATTGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATGA-GTTTT-GGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-ATT-GTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--GGAAGGC-TTGA-T-GA-AN-G-CAAT-CCT-CTGCAAGG-ACATCCT--GGAGCTNGCTGTAAATGGGATTTCTCTGCATTTGGTT-GAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG-CTGGAATGT-GGTGTTTTGACTGGTCTGTTTGGGAAAGC-GATGGNTGGAGG-TGAGAAGGTATTC--T--CCTCTATCT-GT-NATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCC-GTAGTTGTTGAGGC-GAA-CTT-T------GGT-AA-GTGCTGTACATCTGAGTGGC--AGG-A-TACTGCTGCT-GCATG-TA--------CTTCT-GATCTGTACTG-TAGAAGNCC-TGGGTAAC----TCTGTT-GGA--T--GTGTCTGTT--GCCGTAGG----TG-AAGAAA--CTTG-TCTTCCATTCT
gi|1 : ACCCAAAAATGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATGTTATACTTAGAATTAGTTTT-ATCTTGCTCTTTGGTAATAAGTTCTATTATATT-AAATGGTATGACGTAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGTAATATGAGTATA---TA--ATGATGCATGGTTT--GATG----CAGTCAA-CA-GAAAA--A-CACA--AACAAG-CTCAATGTTCAC-TTAATTA-TC--CTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGT-T--------GCC-T--C-TCTTTG-ACATCCTTG-AGAACTCTCTGC-TTTT-AGA-GACCATTTCCACATGCT-GGCTGT---C--CTGGG---AAC-TTTGGAT--AAAGTAATTC-GGA-TT-TGTTTCTTCGTGT---TG--TTTTCA-CGA---CACCT--TTTGC-C--GCCAGCACA--GCGCTTCACCTG--TTCAG--TGGTCAGGCCGGTTTTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-GGTTGTC-CAGG--TGGG-TCTC-----G---TACCA-A--T-GATTTA-G-AA-TATCACGAGAC-TT-TGAGGCC-TGGCTTGGAGA--GCA-G-ACATTTCCCTCTTCAT--TCTC-T---ATACTTAATTGGATGCTGGTTTC-C--AG-AGA--TAGACAGGGT-GT----GAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGG-TCAGTCCTGACAGCCT-CACCAGCTCGT--CTAC--CGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAGTTG-TTAAGTACATTGTGAAGT----TCCATGCACATGAA-ATTCTTGCTTTCT--TCATC--CCTATCTTTCTCTTAAGGGGATTGCTTTGT-TGAAATTT-CGTTTGGTG-T-GTTAGCA--AAATATTTCC-TCTCCTCT-AATAG-GACTGTTTGTCACTA----AGGC--TA-AAATGGGA-TGAGT-GATAGA-GT-T-GAAGGC-AGTTTC---------ATGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGG-----------------A-------AGCAG--GT------TGG--GC-AG--------ACGTTGGAAGAA-------ACGCTATGATCACTGGGG--GAGGCTGTTAGGCAACACA-GAAGCAGGTGGGCAGACA-TTGG--GAGAAA-CAC-TATG-ATCACTG-GG-GA-ACATATTTT-TCTG-T-GA---AAGCATCAA-GCATCCTCT-GCAGTAAATTCC-ACTCAATT-------TACTGGCCTGATT-AGGATATCCAC-ACCACTTGTCCACTTGCAATGACAGG--CTTG---GTTG-AAGTTAAT------TGCAGGAT-CCACT-C-CTG-TTCAGAGG-AGGCACTGCTG-CCACTG-AAGCTG-AGATGAGAACTTGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATTGATGAGAAATGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--TGAGAAAGA--TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AA--GCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAG--AA-A-TACACC-AT--GACTTTGAAGCATATTGGGA-TTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATGAAGTTTT-GGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-ATTTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--AGGAGGC-TTGA-T-GA-ACTG-CAATTCCT-CTGCAAGGGACATCCT--GGAGCTTGCTGTAAATGGGATTTCTCTGCATTTGGTT-AAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG--TGGAATGTAAGTGTTTTGACTGGTCTGTTTGGGAAAGT-TATGGGTGGAGGTTGAGAAGGTATTC--T--CCTCTATCT-GT-GATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCT-GTAGTTTTTGAGGC----------------GGT-AA-GTGCTGTACATCTGATTGGC--AGG-A-TACTG-TGCT-GCATGTTA--------CTTCT-GATCTGTACTA-GAGAAGGCC-T-GGTAAC----TATGTT-GGA--T--GTGT-TGTT--GCCAT-GA----TG-AAGAAA--CTTG-TCTTCCATTCT
gi|10 : TGGTCT-GGGTCCAGA-GGGTGAAG--GG----CGTTGA-TTGA-AG-G-CAAG-TCC-CTGCAAG--ACATCCCTGGGAGCTGGCTGTAATTTGGATTGCTCTGCATTTGGTTTGAAGAACTGGGAAGGG--GGA--GC-TTAGTGGCTGTTCTTGTATGTTCTGTGGACTGGAATGT-GGTGTTT-GGCTGCTCTGTT-GGGAAAGT-GATGGGTGGAGG-TGAGAAGGTATTC--C--TCTCTATCT-GT-GATCTGTGGGTAAAGACAGGGAAAGCTCTTGTCC--TAGATGTTGAGGC-------T-T------GGT-AACGTGCTGTACATCTGAGTGGC--AGGCATTACTGCTGCT-GCATG-TA--------CCT-T-GATCTGTACTGTTAGAAGTCTGTGGGGAAC----TCTGTTGGGA--T---TGCCAACT--GCTGTAAGGCCTTG-AAGAAA--TTTGATCTTCCATTCTccag
gi|11 : A-TGAATCCGTAAA-GT-T-GAAGGC-AGTCTC---------ACATTGAGT--T---A-TATCCAGC-CCCTGAAACACTGGAGCTGAAGCTGTAGGGTA-------GGCAG--G-------TGG--GC-AG--------ATGTCGGGAGAA-------ACACCGTAATCACTGGGG--G
gi|11 : CACTGGAGCTGAAGCTGT-AGG----GTA-G--GCAGGTGGGCAGATG-TCGG--GAGAAA-CAC-CGTA-ATCACTG-GG-GGGAGATATCGC-TTTG-AAGA---AAGCTGCAA--CATCTTCT-GCTGTAA-TTTCGAATAA-GT-------CACTTTCCTGTTTGATGCTGTCCAC-ACCACT-GTCCACTTGCAATGG-------TTG---ACTG-GAGCCAATGAAATTCACAGAAT-CCTTTTC-CTG-TTCAGAGG-AGGCACTGCTA-CTGCTA-CTGCTG-CGAGGAGAACT-GGAGGGGGAAATGATT-TGTGATCTCTGTTGCTGTGATAAAGCAGTGATGACATTCAAGTCCGGTGTATTGGGGAGAACCGGAGCA------TGTTTGgagatatcgctttgaagaaagctgcaacatcttctgctgtaatttcgaataagtcactttcctgtttgatgctgtccacaccactgtccacttgcaatggttgactggagccaatgaaattcacagaatccttttcctgttcagaggaggcactgctactgctactgctgcgaggagaactggagggggaaatgatttgtgatctctgttgctgtgataaagcagtgatgacattcaagtccggtgtattggggagaaccggagcatgtttg
gi|12 : atgaatccgtaaagttgaaggcagtctcacattgagttatatccagcccctgaaaCTGCTGTGAGACTC--G-CTGGA--TGAGAAAGA--TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGG-AA-A-TACACCTA-TGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTG-TTG-AATGA-GTTTT--GT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-ATT-GTAGTCGTGGGTTAT
gi|13 : TAGCGACTGTT-GTCACTATCCTAG-C--TA-AAAGGGGA-TGAGTGAATAGATGTCT-GAAGGCGAGTTTCCCTCGTTTAACAT-GAGTCTG---G-A-TCTGAC-TCGTGAA-CACTG------------------A-------AGCAG--GT------GGA--GCGAG--------ACGTTGGAAGAATCAAATCGCTCTATGTTCACTGGGGT-GAGGCTGT-AGGCAACACA-GAAGCA-GT-GGCAGG-A-TCAGTTAAGAAACCACTTATG-ATCACTGAGG-GG-ACATATTTC-TC-A-T-GATCGAAGCGTCAGTGCATCTTCT-
gi|14 : TAATTGGATTACGGTT-C-C--AG-TGA--TGGACAGTGTTGTAGCTGAAATC-------------TGCTTGGGC-CT-CAACT-TGTT-------TTGCAATTCAGTC-----------CA--AG---------A----GTTGTCAGTGG--T-GTGG-TAC-AGACGTGGGGCGGGCA-CCAATTG-TTCAGTACATTG----GT------------CA-GAATATCCATCCT---------TC--C-AATCTTTCTCGTGAGGGATTTACTTTGC-TGAA-CTT-CCCCTGGTGTT-GTAA-CA--AG-CATTTCCTTCTCCTCTGAATGG-Gtgcag
gi|15 : atgAAAGTGGAATGAAATGAAAGGAAAATTAAAAAAATCCAAGAAACGACATTCAACATTTAGAATTACTTTTTATCTTACTTGTTG---ATAAATTCTTTTACA---AA-TGAGATGCAAAAATTCAGTATGAT------ACATGAGCACTGATTTGATTGTA--ATGAATTA-GAAATATGAGTATA---TACAATAATACATGGTTT--GATGCATGCAG
gi|16 : ACCCAAAAATGGAATGAAA---GAGGAA-G---AAATAACCGAAGAAGCATTATGTTATACTTAGAATTAGTTTT-ATCTTGCTCTTTG---GTAAGTTCTATTATATTAAA-TGGTATGCAGTAAATAAGTATGATAATGATATATGATCAATGATTTCAATATATGATAAAAT-AGTAAT-TGAGTAatagaaca
gi|17 : aaaacGTTCTCTAAT-ATT--C-TTTCTT-CTCTTGAGGATAT-ACTCT-C-TGCC-TTC-CACC-GGTG-TTGTT--CATTGA-TATTTCC-TCTCCTCT-AATAG-GA-TGTA-GTCACCA----AGGCTGTA-AATTGAGATTTAGTTGAT
gi|18 : ttagtccaggcccatgaaaagttgttctgtttcttgattccggaGAAAGC-GGTGGCTGGAGG-GGAGAAGATATTC--TGTCCTC---CT-GT-TATCTGTGGATAA--GCTGGGAAA-CTC-TGGCC-GTAG-TGCTGGGGCTGAA-CTT-TTG----GGT-AA-GTGCTGTACATCTGAGTGGC--tca
gi|19 : GGAGCAAGAGATTGTTTGCTGTAAGACCC--A-ATGGAAACAAGGGAGAACTGTCGAA--G----GAATGGATCCTGAG-GATGGTACTCGCATGTGG-GT--GAG-TCCAGTATT--ATTG
gi|2 : AAGTGGAATTTAA---GGGGAAA-----AATAACCAAAGAAGAATTATCCTATACTTAAAATTAGTTTT-ATCTTGCTCATTG---ATAAGTTCTA--ACTTT-AA-TGATGTGCAGGAAATAAGTATGA------TATATGACCAATGATTTCATTATG--AT-AAATAAGGAATATGAGTATAAGGTACAACGATGCATGGTTTTGGATG---GCAGTCAAACAAGAAAATTACCA-ACCAACAA-GTTCAATG-TCA-CTTAAAT--TCTCCTCTTCCAACATGTTGAGACATTCTAAGGGCATCATCTAGTCT--------GCCTT--CCTCTTT-GACATCCTTG-AGAACTCTCTGCCTTTT-AGAGGACCTATTCCACATGCTAGGCTGTAACT--CTGGGGACAACTTTTGG--TAAAGATAATTCGGGA-TTATGTT-CTTCGTGG---TG--TTGGCACCGACTTCATCTTATTTGCACAAGCCAGC-C---G---CTCACCTGCTTCCAG--TGGTCAAACC-GTCTTC--ATGCGCC-----AA-CTCTTTTTTCTGCTCTTC-------AGTAGGG-TATGG-G-TTTTCGCAAGATTTGC-TTTG-----G---TACCA-ACTT-GCTTTAGG-AAATAT-ACAACAT-TTGGGAGGCCATGGGCTGGAAAAGGCA-GAACGTATCCTTATTAATGGTCTT-C----AATTTAATTGGATGCTGGTTTCGC--TG-TGACTTGGACAGGGT-A---TTGAAA-CACCG-CACTCTTTTG-TTGGCCAAT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCTCCACCAGCTCGTGCCTACTTCGGTGTCGGTGGGATAATGGGTACTGGGTGTGGCTCTGGTATCCAATTG-TT-AGTACATTG----GT----CTCAT-C---------------CTCTCT--T------------TTTCTC-TGA-GGTATTGCTTGGT-TGGA-TGT-CCTCTGGTG------------------------------T-AATAG-GACTG-A-GTCACTG----TGGC--TATAAATGGGG-TGAATTGATAAA-GT-TGGAAGGC-AATTTC---------ATGTTGAGC--GTAAGTAATCGAACATGGTGAAGCACTGG-----------------GGCTGGATAGCTGTAGTGCAACATAGAAGC-AGGTGGGCAGACTTTGGGAGAA-------ACACTATGATCACTGGGG--AAAGCTGT-AGGCAACACACGAAGCAGGTGGGCAGGCACTTGG--GAGAAA-CAC-TATGAATCACTG-GGAGG-AAATATTTCAACTG--------AAGCAAC-A-GCATCTTTTCGCGGTAA-TTCCAACTCA-TTCTTCCCCCACTGGCCTGTTTGAAGGAGTCCACAACCACT-GTCCACTTGCAATGAC-GGACCTAG---GTCGTGTCTTAAT------CGCAGAATGCCACTTCACTGTTTCAGAGGAAGGCACTGCTGCCCACTGAAAGGTGAAGATGAGAA-T-GGTGGGAGAAATGGTTGGGTGATTTCTGTTTC-------AA-----------------GTCAGGTGTATCAGTGAGAAAC--AGCAG-----CATCTG--GT--GACTTGAG-CTTGA--C--CGAAG-A-TGTCAGA--GGAGAAAGTGGAATCAGAGCGAAGATGC-----TATGGAGT--G-GCTCCA-TATT--GTTGAAGGGCA----AGAGGTTGGTTATATAA-CC-------TGAG--GAAAAC--------ATGA--TTGA---------------TGCA-GCAAGA-TACATCT-TTGGATGTTGAAG-ATATT-GGAATTGTAGA-GAGAAAGGCCCAGGAATTTGGCAAGATTCTGAGAGCAGGCTCTGT-GTTGGG-TTGTG-TGTTGG-GATGA-CTTTT-GTG--GGATCTGG-AATTT-TGCTGGGAAGCAGACCGCTGTTGTATCCAATTGTTAATT-GTTATCATGGGTCACAGTCTGGGAT---CAGGGGTGGAAGTGGAAGGC-TTGATT-GA-AG-GCCAATGTCT-CTGC
gi|20 : agaacacctTGGAGCACTGG-----------------GGC-----AGCAGCTGTGGGG--TAG--GC-AG--------ACGTTGGGAGAA-------ACctgggtaagggg
gi|3 : tgaattaggactaaccatctgtTGCTGTGAGACTT--GGCTGAA--CAAGGCGGAA-TGTCTGAAGG----AATCGGATCCTGAG-GACGG-AC-----TATGG-GTGGG-G-TCCA-TATTGGGTTGAGA---AGCAGAGAGGCTGGTTATATGATCCATATGGTTGAGCAG-AGGCTGGTTATTATGAGTCTGAGGAAACATGATTTGATGCATGCAA-ATTACACCT-TTGGACTTTGAAGCATATTGGGCATAGTAGATGAG-AAGGCCC-GGAATATGGC-AGATTCTGAGACT-GGCTCTGTAGTTGGGTTTGGGTTGCTGGTACTGA-CTTTTAGATTGGGGTCTGGAAATAACTGCTAGGAAA-GAG-CAATGCCGTATCC-ATTATC--TT-CCA-------GTTA----CT-GGAT---------TGGA------------TG--T-GACAG-G-CATTACCTACCGCAAGG-ACATTCT--GGAGCTGGCTGAAAATGGGATTCCTCTGCATTTGGTTGGAAGAACTGG-GTGGATTGACAGGCTTTCATGGTTGTT-TTGT-TGTGCT-TGG-CTGG-ATGT-GGTG-TTTGACTGG-CTGTTTGGAAAAGCGGGTGGCTGGAGG-GGAGAAGAT-TTCTGT--CCTGCACTT-GTATATCTGTGGATAA--TCTGGGAAACCTC-TGGCCAGTAGTCGCTGGGGCTGAA-CTTATTTTAGGGGTAAA-GTGCTGTAACTCTGAGTGGCAAAGC-A-TACTGCTGCTAGC-TG-TACACAAAAGCATCTGGATATGTTCTG-TAGAAACCT-GGGGTAACACTATCTGTT-GGA--T--G-GTCTGTTGAGGCGAAGG----TGTAAGAAAGTGTTG-TATTCC
gi|4 : tTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTC-----G---TACCA-A--T-GATTTA-G-AA-TATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACATTTCCCTCTTCAT--TCTCTT---AAACTTAATTGGATGCTGGTTTC-C--AG-AGA--TAGACAGGGT-G---TTGAAA-CACCG-CACCCTTTTG-TTGGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGCAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAGTTG-TTAAGTACATTG----GTGAAGTCCATGCACATGAA-ATTCTTGCTTTCT--TCATCCTC-TATCTTTCTCTTAAGGGGATTGCTTTGT-TGAA-TTT-CGTTTGGTG-T-GTTAGCA--AA-TATTTCC-TCTCCTCT-AATAG-GACTGTT-GTCACTA----AGGC--TA-AAATGGGA-TGAGTTGATAGA-GT-T-GAAGGC-AGTTTC---------ATGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACT-G-----------------A-------AGCAG--G-------TGG--GC-AG--------ACGTTGGAAGAA-------ACGCTATGATCACTGGGG--GAGGCTGT-AGGCAACACA-GAAGCAGGTGGGC---CA-TTGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TCTGAT-GA---AAGCAC--A-GCATCTTCT-GCAGTAA-TTCC-ACTCA-TT-------TACTGGCCTGATTGAGGATATCCAC-ACCACT-GTCCACTTGCAATGAC-AG--CTTGTTAGTTG-AAGTTAAT------TGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCACTG-AAGCTG-AGATGAGAACT-GGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATTGATGAGAAATGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--TGAGAAAG-A-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGG-AA-A-TACACCTA-TGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTG-TTG-AATGA-GTTTT--GT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-ATT-GTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAA--GGAAGGC-TTGATT-GA-CT-G-CAAT-CCT-CTGCcatgcattcatcagagaaggtgcctgccacaactgaagaacaaggagcttagacaagtgcaataccaatatttgatgtgtatgaagaagtttgttgtctcagaattctgagcacccaataatttcccataggaaaggatgctttcggtggtaaggttatgatataaaagaaggagcacttgactgagactcagtacataagtttataagcgcgctggtggtgggcatgctccaacattctgagactaactcagcatggccaaacttcctcgcatccacgctcttccccatcacgtagtgccagtaattttgcaatccatcgacagaacccagggtttactttgtgttttctaaaaaattagtcaggaaataatcacttcagaactagcactacacactatgataaacacacaatcggataataactttataagtggaaagagtgggaattaggtcactgtaattgtgtaatgattagtctttaatttggagtatgggacagcgagcaaaggt
gi|5 : AGTCT-GGAT---GA-GGGTGGAA--GGAAGGC-TTGA-TTGA-CT-G-CAAT-CCT-CTGCAAGG-ACATCCT--GGAGCTTGCTGTAAATGGGATTTCTCTGCATTTGGTT-AAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG-CTGGAATGT-AGTG-TTTGACTGGTCTG-TTGGGAAAGT-TATGGGTGGAGG-TGAGAAGGTATTC--T---CTCTATCT-GT-GATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCT-GTAGTT-TTGAGGC-G--------------GGT-AA-GTGCTGTACATCTGATTGGC--AGG-A-TACTGTTGCT-GCATG-TA--------CTTCT-GATCTGTACTA-GAGAAGGCC-T-GGTAAC----TATGTT-GGA--T--GTGTCTGTT--GCCAT-GA----TG-AAGAAA--CTTG-TCTTCCATTCT
gi|6 : AGTCT-GGAT---CA-GGGTGGAG--GGAAGGC-----------------AAT-CCT-CTTCAAGG-ACATCCT--GG------TTGTAAATGAAATTTCTCTGCATTTGGTT-GAATAACTGG-AAAAA--AGAAGGC-TTCATATTAGTT-TTGC-TGTTCTGTTG-CTGGAATGT-GGTG-CTTGACTTGTCTG-TTGTGAAAGT-GATGGCAGGAGA-TGAGAAGATATTC--T---CTCTATTTGGT-TACCTGTGGACAA--GCAGAGAGC-CTC-TGTCC-GTA---------GC-GAATCTC-TA-----GGT-AA-GTTCTGTACATC-----------AG-A-TGCTGATGCT-TCGTG-TA--------CTTCT-TATGTATTCTG-TAGAATTCC-C-TGTAAC----TCTGGG-GGAGGTAGGTGTCTGTT--GCCAC-GG----TG-AAgaagagcctgtacagtcgaacaacgagcttaagtctccaatatttgatttatgaagaatttttggagtctcaattcagcataaatgatgattttcaatgaaggatgctttgaattctgatttgatgatagcttgtacatggagctggcttcagtccagtatatatagctggtggtggacatgttctctattacctgagactctcgacttcatgccaacctcctcctcactcctctccatgccagccattgcaatccatcctcgacattgttttccttgtgcagtatatcaatatacatccagaaaaattgaattcatagtaatttctgacaattacacttatcaaattatgtttacagtgcagttcagctttaacagtgggaatgggacacctgtaattgggtaataatgattagattaattggataatggaggagcccaggtgt
gi|7 : AATTA-CA-A--AACAAGGCTTCATGTTCACCTT-AGTGCTTTCCTCATCCAACGTA-TGA-ACATTC-AAGGACAATGT--GGTTTCTTACGTGGCT-TCACTTCTTTGGATATCCATGTAGA--CCTCTGCTTTTCAAGA-G-CCACTTACACATGCT-GGCT-TA--CTGCTTTGG--AAC-TTTGGATTAAACGTAATTTCGGACTT-TGTT-CTTC-TGTTTATGTCTTTTCA-CGA---CACC---TTTGCTC--GC--GC-CCAGACGTCTCACCTG--TTCAGTTTGG-CAGGCCGGT-TTCTAAT-T-CCTTCATATGCTCAT-CTTCTGTGATTCCTCGCTTTGTGGGGATGGAGTG-TTGTC---AG--TGGGATCTGCACCAGCTTTACCACA--TAGATTTA-GCAAGTATC-CGAGAC-TT-TG-GGCCAT-GGCTGGAGA--GCACG-ACATTGTCCTCTCATTG--CTC-CGTTAAACTTAAGTTGATGCTGGTTTC-CCAAGCAGA--TAGA-AGGGT-G---TTGAAA-CACCGCCGCCTTTTTGTTTTG-C-ATGCCACTCTGTTCAC-TGTTTGC-GGTCAGTCTTGACAGCCacattccttgaagctgaggcctgttacagtatcactattgtttatgattacagaggtaaagtgaacaaacactcagcatcaggaattttgtacgtcctctaccatcgataggcttttgatgacttacttgggactaagctcactcagagagcaggatgagcaccagtcgaacagtatatatagcgtgtgttggtacaactctctattacctgagactctcaacttcatcctttgtccttctcatactccacccattagtgccagtaaatctgacacaatacctccacaagatgtcttctttagtgtattatgagcaaaattattagtcaatattataacttcaaacattaattacaacttatgtgcaggaatttgtttatataagatggccccatgttcagctttatagagtgacccgcggcaatcaaacacctcgttaagctacatgcgtgtagattaattgggatggagccaaggaattgg
gi|9 : CTATTGTTC-------TGTGAGG-TAGGG-G-TTGTC-CAGA--TGAG-TTTG-----G---TATCA-C--T-GATTTA-G-AA-CATCG-GCGACATT-GGAGGCCATGGGCTGGAAA--GCA-G-ACGTATCCTTCTTAATGGTCTT-C---AA-TTTAATTGGATGCTGGTTTC-C--AG-TGA--TTGACAAAG--GTA-TTGAAACACCCG-CACC-TTTTGTT-GGCC-AT-C-ACT-TCTTCACTTGTTTGCGGGTCAGTCCTGATAGTCT-CACCAGCTCGT--CTACTTCGCCGCCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTGTTTAAGTACATTG----GT----TTCAT-C---------------CTCTCT---------------TTTCTCTTTGAGATATTGCTTTGTATGAA-TGTATGTCTGGTG------------------------------T-AATAG-GACTGTT-GTTGCT-----AGGC--T-------------AGTTGGTAGA-TT-T-GAATGC-AATTTC---------Agt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TATACAGTGGAACAAAGTGCTGAAGAAGGTCTCCAATGTTTGATGATGAAGGCTTCAGTTCACTATGCAGCAATTCTGGAAATGTCTTTGAATTCTTGTTGAGTGATAGTTATGGTAATGGGACAGAGCCATCCAGGACAGTATATATAGCTGGTGGTGGACATGTTCTCTATTACCTGAGACTCCTGTCATGCCAACCTCCTCCTCACTTCTCTCCATAGAGCCAGCAATGGCAGTTCCTAAGATTGTTTTGGTTGTGCAGTGTATCCAGTATGCATCCAGCTAAATTAAATTCCTAGTAATTTGTTACCATGACACTATCAAAACATGTATAGAGCAGGCCAGCTTGTACAGTTAGACTTCCATACCTATAATTGGGTAATGATTAGAGCCTGTTGACAATTGAGGAGCCCAGGTGAGA
Unaligned ( gi|21 ): GTGGGAATTAGGCACCTGTAATTGTGTAATGATTAGTTTAATTGGATAATGGAGGAGCAAAGGT
Alignments
lowQualScore : 111 22222 1 111 111 1 3333333 11 222 11 3333 1 1 1 2222 11 11 22 1 22 5555555555 222222 11 1 1 1 1 1 333333 222 1 111 1 1 1 1 1 222 11 1 222 222 4444444444444444444 11 11 1 11 111 22222 2222222 11 222222222 1111 22 11 22 111111 3333 1 11 1111 999999999999999999999999999999999999999999999 5555555555555555 11111 222222222 22222222 8888888888888888888888888888888888888888 22222222 2222222 11 11 22222222 1 1 1 3333333 1 1 222222 111 1 222222 1 1 1 1 1 1 1 11 1 333333 1111 222 1111 11111 22222222 2222222 11 22222222 555555555555555 222 2222 1 222222 111 111111 111 2222222222 111 11 1 11 2 1 222222 1 111 8888888888888888 22222222 222 1111 1111111 11 2222222 111 1
lowQualScore : 777 77777 0 1 0 1 777 3 000 0 1 1111111 0 33 7 66 1 3 333 6 0 88 0000 5 5 7 3 2222 33 7 33 7 1 55 7 7 6 3 00 1111111111 444444 33 3 7 2 3 3 7 1 3 6 999999 555 3 333 1 3 3 3 3 3 6 333 88 3 333 555 4444444444444444444 88 88 7 6 2 33 444 55555 2 6 6666666 8 8 8 8 11 8 444444444 4444 8 22 3 8 88 0 0 11 8 8 1 0 00 999999 0 6 99 77 99 0 6 3333 7 3 6 5 9 2 6 6 2 6 3 1 2 1 8 11 66 5 8 0 8 8 5 7777 333333333333333333333333333333333333333333333 3 1 1 6 6 6 1 9999999999999999 6 6 5 6 55555 99 6 5 6 6 6 6 666666666 6 11111111 0 8 1 1111111111111111111111111111111111111111 99 6 44444444 1111111 1 55 8 8 0 0 44 8 11 8 8 8 8 8 8 8 0 66666666 88888 8 4 0 9 0 2222222 1 2 0 0 0 0 222222 777 0 888888 0 3 0 0 0 0 2 0 0 22 0 3 0 2 2 2 0 2 111111 1 99 6 0000 111 99 4444 6 66666 6 99 6 6 6 99 22222222 0 0 6666666 11 8 99999999 88 000000000000000 000 8 8 2222 5 0 8 8 8 8 1 0 0 8 0 3 0 8 8 333333 8 8 8 8 666 3 1 5 444444 111 3 77 2222222222 5 111 5 8 11 0 3 6 8 11 0 8 0 8 8 8 0 8 0 0 0 0 0 77 1 6 111111 1 6 77 99 3 6 6 111 4444444444444444 6 6 2 99 8 8 8 8 3 8 99999999 8 1 88 1 666 7777 8 3333333 11 7777777 8 444 0
lowQualScore : ... ..... . . . . ... . ... . . ....... . .. . .. . . ... . . .. .... . . . . .... .. . .. . . .. . . . . .. .......... ...... .. . . . . . . . . . ...... ... . ... . . . . . . . ... .. . ... ... ................... .. .. . . . .. ... ..... . . ....... . . . . .. . ......... .... . .. . . .. . . .. . . . . .. ...... . . .. .. .. . . .... . . . . . . . . . . . . . . . .. .. . . . . . . .... ............................................. . . . . . . . ................ . . . . ..... .. . . . . . . ......... . ........ . . . ........................................ .. . ........ ....... . .. . . . . .. . .. . . . . . . . . ........ ..... . . . . . ....... . . . . . . ...... ... . ...... . . . . . . . . . .. . . . . . . . . ...... . .. . .... ... .. .... . ..... . .. . . . .. ........ . . ....... .. . ........ .. ............... ... . . .... . . . . . . . . . . . . . . . ...... . . . . ... . . . ...... ... . .. .......... . ... . . .. . . . . .. . . . . . . . . . . . . . .. . . ...... . . .. .. . . . ... ................ . . . .. . . . . . . ........ . . .. . ... .... . ....... .. ....... . ... .
lowQualScore : 555 22222 2 0 0 0 555 2 222 0 0 5555555 8 88 0 55 0 2 333 7 7 33 0000 5 5 3 3 7777 33 3 33 3 0 33 3 3 7 3 00 3333333333 777777 33 3 3 0 3 3 3 0 3 7 333333 000 3 777 0 3 3 3 3 3 7 333 33 3 333 777 7777777777777777777 33 33 3 7 0 88 000 00000 5 5 0000000 0 0 0 0 00 0 000000000 8888 0 00 8 0 66 8 8 00 0 0 4 6 00 222222 8 7 22 77 22 3 7 0000 7 2 7 2 8 5 7 7 5 7 2 0 5 0 0 00 22 0 0 8 0 0 6 0000 333333333333333333333333333333333333333333333 2 0 0 7 7 7 0 5555555555555555 7 7 7 7 88888 22 7 7 7 7 7 7 777777777 4 22222222 8 0 0 3333333333333333333333333333333333333333 22 7 22222222 7777777 4 88 0 0 8 8 66 0 00 0 0 0 0 0 0 0 8 88888888 66666 0 2 0 0 0 5555555 0 5 2 8 0 0 888888 555 0 888888 0 2 0 0 0 0 0 0 0 55 0 2 2 5 5 5 2 0 000000 0 22 7 8888 333 22 2222 7 77777 7 22 7 7 7 22 00000000 8 8 0000000 00 0 00000000 88 000000000000000 000 0 0 8888 6 6 0 0 0 0 4 8 8 0 8 6 6 0 0 000000 0 0 0 0 888 2 7 7 444444 999 6 11 4444444444 7 666 7 0 00 8 8 0 0 00 8 0 6 0 0 0 8 0 4 8 8 6 8 33 0 7 222222 7 7 77 22 3 7 7 777 5555555555555555 7 7 5 22 0 0 2 0 8 0 00000000 0 4 66 0 888 0000 0 8888888 00 0000000 0 000 0
consensus : ACCCAAAAGTGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATNCTATACTTAGAATTAGTTTT-ATCTTGCTCNTTG---ATAAGTTCTATTACATT-AA-TGGTATGCAGNAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGNAATATGAGTATA---TACAACGATGCATGGTTT--GATG---GCAGTCAAACAAGAAAATTA-CA-A--AACAAGGCTCAATGTTCACCTTAANTG-TCTCCTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGTCT--------GCC-T--CCTCTTTGGACATCCTTG-AGAACTCTCTGCCTTTT-AGA-GACCANTTCCACATGCT-GGCTGTA--C--CTGGGG--AAC-TTTGGATTAAANGTAA-TTC-GGA-TT-TGTT-CTTCGTGT---TG--TTTTCA-CGA---CACCT--TTTGC-C--GCCAGC-C---GCGCCTCACCTG--TTCAG--TGGTCAGGCCGGTCTTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTG-----G---TACCA-A--T-GATTTAG-AAATATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACGTTTCCCTCTTAATGGTCTC-C---AAACTTAATTGGATGCTGGTTTC-C--AG-NGA--TAGACAGGGT-GT--TTGAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTG-TTAAGTACATTG----GT----TCCATGCACATGAA-ATTCTTGCTCTCT--T-ATC--C-TATCTTTCTCTTGAGGGNATTGCTTTGT-TGAA-TTT-CGTCTGGTG-T-GTTA-CA--AA-TATTTCC-TCTCCTCT-AATAG-GACTG-TTGTCACTA----AGGC--TA-AAATGGGA-TGAGTTGATAGA-GT-T-GAAGGC-AGTTTC---------ACGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGG-----------------A-------AGCAG--GT------TGG--GC-AG--------ACGTTGGGAGAA-------ACGCTATGATCACTGGGG--GAGGCTG-TAGGCAACACA-GAAGCAGGTGGGCAGGCA-TCGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TCTG-T-GA---AAGCANCAA-GCATCTTCT-GCGGT-AATTCCGACTC-ATT-------CACTGGCCTGNTTGAGGATGTCCAC-ACCAC-TGTCCACTTGCAATGAC-GG--CTTG---GTTG-GAGTTAAT------CGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCGCTG-AAGCTG-AGATGAGAAC-TGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATCGGTGAGAAACGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--CGAGGAAGAA-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGGCAA-A-TACACCTATTGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATG-AGTTTT-GGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-A-TTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--GGAAGGC-TTGA-T-GA-A-NG-CAA-T-CCT-CTGCAA-GGACATCCT--GGAGCTNGCTGTAAATGGGATTTCTCTGCATTTGGTT-GAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG-CTGGAATGT-GGTGTTTTGACTGGTCTGTTTGGGAAAGC-GATGGNTGGAGG-TGAGAAGGTATTC--T--CCTCTATCT-GT-NATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCC-GTAGTTGTTGAGGC-GAA-CTT-T------GGT-AA-GTGCTGTACATCTGAGTGGC--AGG-A-TACTGCTGCT-GCATG-TA--------CTTCT-GATCTGTACTG-TAGAAGNCC-TGGGTAAC----TCTGTT-GGA--T--GTGTCTGTT--GCCGTAGG----TG-AAGAAA--CTTG-TCTTCCATTCT
Reference ( family-6572 ) : ACCCAAAAGTGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATNCTATACTTAGAATTAGTTTT-ATCTTGCTCNTTG---ATAAGTTCTATTACATT-AA-TGGTATGCAGNAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGNAATATGAGTATA---TACAACGATGCATGGTTT--GATG---GCAGTCAAACAAGAAAATTA-CA-A--AACAAGGCTCAATGTTCACCTTAANTG-TCTCCTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGTCT--------GCC-T--CCTCTTTGGACATCCTTG-AGAACTCTCTGCCTTTT-AGA-GACCANTTCCACATGCT-GGCTGTA--C--CTGGGG--AAC-TTTGGATTAAANGTAA-TTC-GGA-TT-TGTT-CTTCGTGT---TG--TTTTCA-CGA---CACCT--TTTGC-C--GCCAGC-C---GCGCCTCACCTG--TTCAG--TGGTCAGGCCGGTCTTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTG-----G---TACCA-A--T-GATTTAG--AATATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACGTTTCCCTCTTAATGGTCTC-C---AAACTTAATTGGATGCTGGTTTC-C--AG-NGA--TAGACAGGGT-GT--TTGAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTG-TTAAGTACATTG----GT----TCCATGCACATGAA-ATTCTTGCTCTCT--T-ATC--C-TATCTTTCTCTTGAGGGNATTGCTTTGT-TGAA-TTT-CGTCTGGTG-T-GTTA-CA--AA-TATTTCC-TCTCCTCT-AATAG-GACTG-TTGTCACTA----AGGC--TA-AAATGGGA-TGAGTTGATAGA-GT-T-GAAGGC-AGTTTC---------ACGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGG-----------------A-------AGCAG--GT------TGG--GC-AG--------ACGTTGGGAGAA-------ACGCTATGATCACTGGGG--GAGGCTG-TAGGCAACACA-GAAGCAGGTGGGCAGGCA-TCGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TCTG-T-GA---AAGCANCAA-GCATCTTCT-GCGGT-AATTCCGACTC-ATT-------CACTGGCCTGNTTGAGGATGTCCAC-ACCAC-TGTCCACTTGCAATGAC-GG--CTTG---GTTG-GAGTTAAT------CGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCGCTG-AAGCTG-AGATGAGAAC-TGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATCGGTGAGAAACGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--CGAGGAAGAA-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGGCAA-A-TACACCTATTGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATG-AGTTTT-GGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-A-TTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--GGAAGGC-TTGA-T-GA-A-NG-CAA-T-CCT-CTGCAA-GGACATCCT--GGAGCTNGCTGTAAATGGGATTTCTCTGCATTTGGTT-GAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG-CTGGAATGT-GGTGTTTTGACTGGTCTGTTTGGGAAAGC-GATGGNTGGAGG-TGAGAAGGTATTC--T--CCTCTATCT-GT-NATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCC-GTAGTTGTTGAGGC-GAA-CTT-T------GGT-AA-GTGCTGTACATCTGAGTGGC--AGG-A-TACTGCTGCT-GCATG-TA--------CTTCT-GATCTGTACTG-TAGAAGNCC-TGGGTAAC----TCTGTT-GGA--T--GTGTCTGTT--GCCGTAGG----TG-AAGAAA--CTTG-TCTTCCATTCT
gi|1 : ACCCAAAAATGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATGTTATACTTAGAATTAGTTTT-ATCTTGCTCTTTGGTAATAAGTTCTATTATATT-AAATGGTATGACGTAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGTAATATGAGTATA---TA--ATGATGCATGGTTT--GATG----CAGTCAA-CA-GAAAA--A-CACA--AACAAG-CTCAATGTTCAC-TTAATTA-TC--CTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGT-T--------GCC-T--C-TCTTTG-ACATCCTTG-AGAACTCTCTGC-TTTT-AGA-GACCATTTCCACATGCT-GGCTGT---C--CTGGG---AAC-TTTGGAT--AAAGTAA-TTC-GGA-TT-TGTTTCTTCGTGT---TG--TTTTCA-CGA---CACCT--TTTGC-C--GCCAGCACA--GCGCTTCACCTG--TTCAG--TGGTCAGGCCGGTTTTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-GGTTGTC-CAGG--TGGG-TCTC-----G---TACCA-A--T-GATTTAG--AATATCACGAGAC-TT-TGAGGCC-TGGCTTGGAGA--GCA-G-ACATTTCCCTCTTCAT--TCTC-T---ATACTTAATTGGATGCTGGTTTC-C--AG-AGA--TAGACAGGGT-GT----GAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGG-TCAGTCCTGACAGCCT-CACCAGCTCGT--CTAC--CGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAGTTG-TTAAGTACATTGTGAAGT----TCCATGCACATGAA-ATTCTTGCTTTCT--TCATC--CCTATCTTTCTCTTAAGGGGATTGCTTTGT-TGAAATTT-CGTTTGGTG-T-GTTAGCA--AAATATTTCC-TCTCCTCT-AATAG-GACTGTTTGTCACTA----AGGC--TA-AAATGGGA-TGAG-TGATAGA-GT-T-GAAGGC-AGTTTC---------ATGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGG-----------------A-------AGCAG--GT------TGG--GC-AG--------ACGTTGGAAGAA-------ACGCTATGATCACTGGGG--GAGGCTGTTAGGCAACACA-GAAGCAGGTGGGCAGACA-TTGG--GAGAAA-CAC-TATG-ATCACTG-GG-GA-ACATATTTT-TCTG-T-GA---AAGCATCAA-GCATCCTCT-GCAGTAAATTCC-ACTCAATT-------TACTGGCCTGATT-AGGATATCCAC-ACCACTTGTCCACTTGCAATGACAGG--CTTG---GTTG-AAGTTAAT------TGCAGGAT-CCAC-TC-CTG-TTCAGAGG-AGGCACTGCTG-CCACTG-AAGCTG-AGATGAGAACTTGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATTGATGAGAAATGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--TGAGAAAG-A-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AA--GCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAG--AA-A-TACACC-AT--GACTTTGAAGCATATTGGG-ATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATGAAGTTTT-GGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-ATTTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--AGGAGGC-TTGA-T-GA-ACTG-CAATT-CCT-CTGCAAGGGACATCCT--GGAGCTTGCTGTAAATGGGATTTCTCTGCATTTGGTT-AAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG--TGGAATGTAAGTGTTTTGACTGGTCTGTTTGGGAAAGT-TATGGGTGGAGGTTGAGAAGGTATTC--T--CCTCTATCT-GT-GATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCT-GTAGTTTTTGAGGC----------------GGT-AA-GTGCTGTACATCTGATTGGC--AGG-A-TACTG-TGCT-GCATGTTA--------CTTCT-GATCTGTACTA-GAGAAGGCC-T-GGTAAC----TATGTT-GGA--T--GTGT-TGTT--GCCAT-GA----TG-AAGAAA--CTTG-TCTTCCATTCT
gi|10 : TGGTCT-GGGTCCAGA-GGGTGAAG--GG----CGTTGA-TTGA-A-GG-CAA-G-TCC-CTGCAA-G-ACATCCCTGGGAGCTGGCTGTAATTTGGATTGCTCTGCATTTGGTTTGAAGAACTGGGAAGGG--GGA--GC-TTAGTGGCTGTTCTTGTATGTTCTGTGGACTGGAATGT-GGTGTTT-GGCTGCTCTGTT-GGGAAAGT-GATGGGTGGAGG-TGAGAAGGTATTC--C--TCTCTATCT-GT-GATCTGTGGGTAAAGACAGGGAAAGCTCTTGTCC--TAGATGTTGAGGC-------T-T------GGT-AACGTGCTGTACATCTGAGTGGC--AGGCATTACTGCTGCT-GCATG-TA--------CCT-T-GATCTGTACTGTTAGAAGTCTGTGGGGAAC----TCTGTTGGGA--T---TGCCAACT--GCTGTAAGGCCTTG-AAGAAA--TTTGATCTTCCATTCTccag
gi|11 : A-TGAATCCGTAAA-GT-T-GAAGGC-AGTCTC---------ACATTGAGT--T---A-TATCCAGC-CCCTGAAACACTGGAGCTGAAGCTGTAGGGTA-------GGCAG--G-------TGG--GC-AG--------ATGTCGGGAGAA-------ACACCGTAATCACTGGGG--G
gi|11 : CACTGGAGCTGAAGCTG-TAGG----GTA-G--GCAGGTGGGCAGATG-TCGG--GAGAAA-CAC-CGTA-ATCACTG-GG-GGGAGATATCGC-TTTG-AAGA---AAGCTGCAA--CATCTTCT-GCTGT-AATTTCGAATA-AGT-------CACTTTCCTGTTTGATGCTGTCCAC-ACCAC-TGTCCACTTGCAATGG-------TTG---ACTG-GAGCCAATGAAATTCACAGAAT-CCTTTTC-CTG-TTCAGAGG-AGGCACTGCTA-CTGCTA-CTGCTG-CGAGGAGAAC-TGGAGGGGGAAATGATT-TGTGATCTCTGTTGCTGTGATAAAGCAGTGATGACATTCAAGTCCGGTGTATTGGGGAGAACCGGAGCA------TGTTTGgagatatcgctttgaagaaagctgcaacatcttctgctgtaatttcgaataagtcactttcctgtttgatgctgtccacaccactgtccacttgcaatggttgactggagccaatgaaattcacagaatccttttcctgttcagaggaggcactgctactgctactgctgcgaggagaactggagggggaaatgatttgtgatctctgttgctgtgataaagcagtgatgacattcaagtccggtgtattggggagaaccggagcatgtttg
gi|12 : atgaatccgtaaagttgaaggcagtctcacattgagttatatccagcccctgaaaCTGCTGTGAGACTC--G-CTGGA--TGAGAAAGA--TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGG-AA-A-TACACCTA-TGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTG-TTG-AATG-AGTTTT--GT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-A-TTGTAGTCGTGGGTTAT
gi|13 : TAGCGACTG-TTGTCACTATCCTAG-C--TA-AAAGGGGA-TGAGTGAATAGATGTCT-GAAGGCGAGTTTCCCTCGTTTAACAT-GAGTCTG---G-A-TCTGAC-TCGTGAA-CACTG------------------A-------AGCAG--GT------GGA--GCGAG--------ACGTTGGAAGAATCAAATCGCTCTATGTTCACTGGGGT-GAGGCTG-TAGGCAACACA-GAAGCA-GT-GGCAGG-A-TCAGTTAAGAAACCACTTATG-ATCACTGAGG-GG-ACATATTTC-TC-A-T-GATCGAAGCGTCAGTGCATCTTCT-
gi|14 : TAATTGGATTACGGTT-C-C--AG-TGA--TGGACAGTGTTGTAGCTGAAATC-------------TGCTTGGGC-CT-CAACT-TGTT-------TTGCAATTCAGTC-----------CA--AG---------A----GTTGTCAGTGG--T-GTGG-TAC-AGACGTGGGGCGGGCA-CCAATTG-TTCAGTACATTG----GT------------CA-GAATATCCATCCT---------TC--C-AATCTTTCTCGTGAGGGATTTACTTTGC-TGAA-CTT-CCCCTGGTGTT-GTAA-CA--AG-CATTTCCTTCTCCTCTGAATGG-Gtgcag
gi|15 : atgAAAGTGGAATGAAATGAAAGGAAAATTAAAAAAATCCAAGAAACGACATTCAACATTTAGAATTACTTTTTATCTTACTTGTTG---ATAAATTCTTTTACA---AA-TGAGATGCAAAAATTCAGTATGAT------ACATGAGCACTGATTTGATTGTA--ATGAATTA-GAAATATGAGTATA---TACAATAATACATGGTTT--GATGCATGCAG
gi|16 : ACCCAAAAATGGAATGAAA---GAGGAA-G---AAATAACCGAAGAAGCATTATGTTATACTTAGAATTAGTTTT-ATCTTGCTCTTTG---GTAAGTTCTATTATATTAAA-TGGTATGCAGTAAATAAGTATGATAATGATATATGATCAATGATTTCAATATATGATAAAAT-AGTAAT-TGAGTAatagaaca
gi|17 : aaaacGTTCTCTAAT-ATT--C-TTTCTT-CTCTTGAGGATAT-ACTCT-C-TGCC-TTC-CACC-GGTG-TTGTT--CATTGA-TATTTCC-TCTCCTCT-AATAG-GA-TG-TAGTCACCA----AGGCTGTA-AATTGAGATTTAGTTGAT
gi|18 : ttagtccaggcccatgaaaagttgttctgtttcttgattccggaGAAAGC-GGTGGCTGGAGG-GGAGAAGATATTC--TGTCCTC---CT-GT-TATCTGTGGATAA--GCTGGGAAA-CTC-TGGCC-GTAG-TGCTGGGGCTGAA-CTT-TTG----GGT-AA-GTGCTGTACATCTGAGTGGC--tca
gi|19 : GGAGCAAGAGATTGTTTGCTGTAAGACCC--A-ATGGAAACAAGGGAGAACTGTCGAA--G----GAATGGATCCTGAG-GATGGTACTCGCATGTGG-GT--GAG-TCCAGTATT--ATTG
gi|2 : AAGTGGAATTTAA---GGGGAAA-----AATAACCAAAGAAGAATTATCCTATACTTAAAATTAGTTTT-ATCTTGCTCATTG---ATAAGTTCTA--ACTTT-AA-TGATGTGCAGGAAATAAGTATGA------TATATGACCAATGATTTCATTATG--AT-AAATAAGGAATATGAGTATAAGGTACAACGATGCATGGTTTTGGATG---GCAGTCAAACAAGAAAATTACCA-ACCAACAA-GTTCAATG-TCA-CTTAAAT--TCTCCTCTTCCAACATGTTGAGACATTCTAAGGGCATCATCTAGTCT--------GCCTT--CCTCTTT-GACATCCTTG-AGAACTCTCTGCCTTTT-AGAGGACCTATTCCACATGCTAGGCTGTAACT--CTGGGGACAACTTTTGG--TAAAGATAA-TTCGGGA-TTATGTT-CTTCGTGG---TG--TTGGCACCGACTTCATCTTATTTGCACAAGCCAGC-C---G---CTCACCTGCTTCCAG--TGGTCAAACC-GTCTTC--ATGCGCC-----AA-CTCTTTTTTCTGCTCTTC-------AGTAGGG-TATGG-G-TTTTCGCAAGATTTGC-TTTG-----G---TACCA-ACTT-GCTTTAGGAAATAT-ACAACAT-TTGGGAGGCCATGGGCTGGAAAAGGCA-GAACGTATCCTTATTAATGGTCTT-C----AATTTAATTGGATGCTGGTTTCGC--TG-TGACTTGGACAGGGT-A---TTGAAA-CACCG-CACTCTTTTG-TTGGCCAAT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCTCCACCAGCTCGTGCCTACTTCGGTGTCGGTGGGATAATGGGTACTGGGTGTGGCTCTGGTATCCAATTG-TT-AGTACATTG----GT----CTCAT-C---------------CTCTCT--T------------TTTCTC-TGA-GGTATTGCTTGGT-TGGA-TGT-CCTCTGGTG------------------------------T-AATAG-GACTG--AGTCACTG----TGGC--TATAAATGGGG-TGAATTGATAAA-GT-TGGAAGGC-AATTTC---------ATGTTGAGC--GTAAGTAATCGAACATGGTGAAGCACTGG-----------------GGCTGGATAGCTGTAGTGCAACATAGAAGC-AGGTGGGCAGACTTTGGGAGAA-------ACACTATGATCACTGGGG--AAAGCTG-TAGGCAACACACGAAGCAGGTGGGCAGGCACTTGG--GAGAAA-CAC-TATGAATCACTG-GGAGG-AAATATTTCAACTG--------AAGCAAC-A-GCATCTTTTCGCGGT-AATTCCAACTC-ATTCTTCCCCCACTGGCCTGTTTGAAGGAGTCCACAACCAC-TGTCCACTTGCAATGAC-GGACCTAG---GTCGTGTCTTAAT------CGCAGAATGCCACTTCACTGTTTCAGAGGAAGGCACTGCTGCCCACTGAAAGGTGAAGATGAGAA--TGGTGGGAGAAATGGTTGGGTGATTTCTGTTTC-------AA-----------------GTCAGGTGTATCAGTGAGAAAC--AGCAG-----CATCTG--GT--GACTTGAG-CTTGA--C--CGAAG-A-TGTCAGA--GGAGAAAGTGGAATCAGAGCGAAGATGC-----TATGGAGT--G-GCTCCA-TATT--GTTGAAGGGCA----AGAGGTTGGTTATATAA-CC-------TGAG--GAAAAC--------ATGA--TTGA---------------TGCA-GCAAGA-TACATCT-TTGGATGTTGAAG-ATATT-GGAATTGTAGA-GAGAAAGGCCCAGGAATTTGGCAAGATTCTGAGAGCAGGCTCTGT-GTTGGG-TTGTG-TGTTGG-GATG-ACTTTT-GTG--GGATCTGG-AATTT-TGCTGGGAAGCAGACCGCTGTTGTATCCAATTGTTAA-TTGTTATCATGGGTCACAGTCTGGGAT---CAGGGGTGGAAGTGGAAGGC-TTGATT-GA-A-GGCCAA-TGTCT-CTGC
gi|20 : agaacacctTGGAGCACTGG-----------------GGC-----AGCAGCTGTGGGG--TAG--GC-AG--------ACGTTGGGAGAA-------ACctgggtaagggg
gi|3 : tgaattaggactaaccatctgtTGCTGTGAGACTT--GGCTGAA--CAAGGCGGAA-TGTCTGAAGG----AATCGGATCCTGAG-GACGG-AC-----TATGG-GTGGG-G-TCCA-TATTGGGTTGAGA---AGCAGAGAGGCTGGTTATATGATCCATATGGTTGAGCAG-AGGCTGGTTATTATGAGTCTGAGGAAACATGATTTGATGCATGCAA-ATTACACCT-TTGGACTTTGAAGCATATTGGGCATAGTAGATGAG-AAGGCCC-GGAATATGGC-AGATTCTGAGACT-GGCTCTGTAGTTGGGTTTGGGTTGCTGGTACTG-ACTTTTAGATTGGGGTCTGGAAATAACTGCTAGGAAA-GAG-CAATGCCGTATCC-ATTATC---TTCCA-------GTTA----CT-GGAT---------TGGA------------TG--T-GACA-GG-CAT-TACCTACCGCAA-GGACATTCT--GGAGCTGGCTGAAAATGGGATTCCTCTGCATTTGGTTGGAAGAACTGG-GTGGATTGACAGGCTTTCATGGTTGTT-TTGT-TGTGCT-TGG-CTGG-ATGT-GGTG-TTTGACTGG-CTGTTTGGAAAAGCGGGTGGCTGGAGG-GGAGAAGAT-TTCTGT--CCTGCACTT-GTATATCTGTGGATAA--TCTGGGAAACCTC-TGGCCAGTAGTCGCTGGGGCTGAA-CTTATTTTAGGGGTAAA-GTGCTGTAACTCTGAGTGGCAAAGC-A-TACTGCTGCTAGC-TG-TACACAAAAGCATCTGGATATGTTCTG-TAGAAACCT-GGGGTAACACTATCTGTT-GGA--T--G-GTCTGTTGAGGCGAAGG----TGTAAGAAAGTGTTG-TATTCC
gi|4 : tTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTC-----G---TACCA-A--T-GATTTAG--AATATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACATTTCCCTCTTCAT--TCTCTT---AAACTTAATTGGATGCTGGTTTC-C--AG-AGA--TAGACAGGGT-G---TTGAAA-CACCG-CACCCTTTTG-TTGGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGCAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAGTTG-TTAAGTACATTG----GTGAAGTCCATGCACATGAA-ATTCTTGCTTTCT--TCATCCTC-TATCTTTCTCTTAAGGGGATTGCTTTGT-TGAA-TTT-CGTTTGGTG-T-GTTAGCA--AA-TATTTCC-TCTCCTCT-AATAG-GACTG-TTGTCACTA----AGGC--TA-AAATGGGA-TGAGTTGATAGA-GT-T-GAAGGC-AGTTTC---------ATGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACT-G-----------------A-------AGCAG--G-------TGG--GC-AG--------ACGTTGGAAGAA-------ACGCTATGATCACTGGGG--GAGGCTG-TAGGCAACACA-GAAGCAGGTGGGC---CA-TTGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TCTGAT-GA---AAGCAC--A-GCATCTTCT-GCAGT-AATTCC-ACTC-ATT-------TACTGGCCTGATTGAGGATATCCAC-ACCAC-TGTCCACTTGCAATGAC-AG--CTTGTTAGTTG-AAGTTAAT------TGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCACTG-AAGCTG-AGATGAGAAC-TGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATTGATGAGAAATGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--TGAGAAAG-A-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGG-AA-A-TACACCTA-TGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTG-TTG-AATG-AGTTTT--GT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-A-TTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAA--GGAAGGC-TTGATT-GA-C-TG-CAA-T-CCT-CTGCcatgcattcatcagagaaggtgcctgccacaactgaagaacaaggagcttagacaagtgcaataccaatatttgatgtgtatgaagaagtttgttgtctcagaattctgagcacccaataatttcccataggaaaggatgctttcggtggtaaggttatgatataaaagaaggagcacttgactgagactcagtacataagtttataagcgcgctggtggtgggcatgctccaacattctgagactaactcagcatggccaaacttcctcgcatccacgctcttccccatcacgtagtgccagtaattttgcaatccatcgacagaacccagggtttactttgtgttttctaaaaaattagtcaggaaataatcacttcagaactagcactacacactatgataaacacacaatcggataataactttataagtggaaagagtgggaattaggtcactgtaattgtgtaatgattagtctttaatttggagtatgggacagcgagcaaaggt
gi|5 : AGTCT-GGAT---GA-GGGTGGAA--GGAAGGC-TTGA-TTGA-C-TG-CAA-T-CCT-CTGCAA-GGACATCCT--GGAGCTTGCTGTAAATGGGATTTCTCTGCATTTGGTT-AAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG-CTGGAATGT-AGTG-TTTGACTGGTCTG-TTGGGAAAGT-TATGGGTGGAGG-TGAGAAGGTATTC--T---CTCTATCT-GT-GATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCT-GTAGTT-TTGAGGC-G--------------GGT-AA-GTGCTGTACATCTGATTGGC--AGG-A-TACTGTTGCT-GCATG-TA--------CTTCT-GATCTGTACTA-GAGAAGGCC-T-GGTAAC----TATGTT-GGA--T--GTGTCTGTT--GCCAT-GA----TG-AAGAAA--CTTG-TCTTCCATTCT
gi|6 : AGTCT-GGAT---CA-GGGTGGAG--GGAAGGC-----------------AA-T-CCT-CTTCAA-GGACATCCT--GG------TTGTAAATGAAATTTCTCTGCATTTGGTT-GAATAACTGG-AAAAA--AGAAGGC-TTCATATTAGTT-TTGC-TGTTCTGTTG-CTGGAATGT-GGTG-CTTGACTTGTCTG-TTGTGAAAGT-GATGGCAGGAGA-TGAGAAGATATTC--T---CTCTATTTGGT-TACCTGTGGACAA--GCAGAGAGC-CTC-TGTCC-GTA---------GC-GAATCTC-TA-----GGT-AA-GTTCTGTACATC-----------AG-A-TGCTGATGCT-TCGTG-TA--------CTTCT-TATGTATTCTG-TAGAATTCC-C-TGTAAC----TCTGGG-GGAGGTAGGTGTCTGTT--GCCAC-GG----TG-AAgaagagcctgtacagtcgaacaacgagcttaagtctccaatatttgatttatgaagaatttttggagtctcaattcagcataaatgatgattttcaatgaaggatgctttgaattctgatttgatgatagcttgtacatggagctggcttcagtccagtatatatagctggtggtggacatgttctctattacctgagactctcgacttcatgccaacctcctcctcactcctctccatgccagccattgcaatccatcctcgacattgttttccttgtgcagtatatcaatatacatccagaaaaattgaattcatagtaatttctgacaattacacttatcaaattatgtttacagtgcagttcagctttaacagtgggaatgggacacctgtaattgggtaataatgattagattaattggataatggaggagcccaggtgt
gi|7 : AATTA-CA-A--AACAAGGCTTCATGTTCACCTT-AGTGCTTTCCTCATCCAACGTA-TGA-ACATTC-AAGGACAATGT--GGTTTCTTACGTGGCT-TCACTTCTTTGGATATCCATGTAGA--CCTCTGCTTTTCAAGA-G-CCACTTACACATGCT-GGCT-TA--CTGCTTTGG--AAC-TTTGGATTAAACGTAATTTC-GGACTT-TGTT-CTTC-TGTTTATGTCTTTTCA-CGA---CACC---TTTGCTC--GC--GC-CCAGACGTCTCACCTG--TTCAGTTTGG-CAGGCCGGT-TTCTAAT-T-CCTTCATATGCTCAT-CTTCTGTGATTCCTCGCTTTGTGGGGATGGAGTG-TTGTC---AG--TGGGATCTGCACCAGCTTTACCACA--TAGATTTAGCAAGTATC-CGAGAC-TT-TG-GGCCAT-GGCTGGAGA--GCACG-ACATTGTCCTCTCATTG--CTC-CGTTAAACTTAAGTTGATGCTGGTTTC-CCAAGCAGA--TAGA-AGGGT-G---TTGAAA-CACCGCCGCCTTTTTGTTTTG-C-ATGCCACTCTGTTCAC-TGTTTGC-GGTCAGTCTTGACAGCCacattccttgaagctgaggcctgttacagtatcactattgtttatgattacagaggtaaagtgaacaaacactcagcatcaggaattttgtacgtcctctaccatcgataggcttttgatgacttacttgggactaagctcactcagagagcaggatgagcaccagtcgaacagtatatatagcgtgtgttggtacaactctctattacctgagactctcaacttcatcctttgtccttctcatactccacccattagtgccagtaaatctgacacaatacctccacaagatgtcttctttagtgtattatgagcaaaattattagtcaatattataacttcaaacattaattacaacttatgtgcaggaatttgtttatataagatggccccatgttcagctttatagagtgacccgcggcaatcaaacacctcgttaagctacatgcgtgtagattaattgggatggagccaaggaattgg
gi|9 : CTATTGTTC-------TGTGAGG-TAGGG-G-TTGTC-CAGA--TGAG-TTTG-----G---TATCA-C--T-GATTTAG--AACATCG-GCGACATT-GGAGGCCATGGGCTGGAAA--GCA-G-ACGTATCCTTCTTAATGGTCTT-C---AA-TTTAATTGGATGCTGGTTTC-C--AG-TGA--TTGACAAAG--GTA-TTGAAACACCCG-CACC-TTTTGTT-GGCC-AT-C-ACT-TCTTCACTTGTTTGCGGGTCAGTCCTGATAGTCT-CACCAGCTCGT--CTACTTCGCCGCCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTGTTTAAGTACATTG----GT----TTCAT-C---------------CTCTCT---------------TTTCTCTTTGAGATATTGCTTTGTATGAA-TGTATGTCTGGTG------------------------------T-AATAG-GACTG-TTGTTGCT-----AGGC--T-------------AGTTGGTAGA-TT-T-GAATGC-AATTTC---------Agt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TATACAGTGGAACAAAGTGCTGAAGAAGGTCTCCAATGTTTGATGATGAAGGCTTCAGTTCACTATGCAGCAATTCTGGAAATGTCTTTGAATTCTTGTTGAGTGATAGTTATGGTAATGGGACAGAGCCATCCAGGACAGTATATATAGCTGGTGGTGGACATGTTCTCTATTACCTGAGACTCCTGTCATGCCAACCTCCTCCTCACTTCTCTCCATAGAGCCAGCAATGGCAGTTCCTAAGATTGTTTTGGTTGTGCAGTGTATCCAGTATGCATCCAGCTAAATTAAATTCCTAGTAATTTGTTACCATGACACTATCAAAACATGTATAGAGCAGGCCAGCTTGTACAGTTAGACTTCCATACCTATAATTGGGTAATGATTAGAGCCTGTTGACAATTGAGGAGCCCAGGTGAGA
Unaligned ( gi|21 ): GTGGGAATTAGGCACCTGTAATTGTGTAATGATTAGTTTAATTGGATAATGGAGGAGCAAAGGT
Alignments
lowQualScore : 111 22222 1 111 111 1 3333333 11 222 11 3333 1 1 1 2222 11 11 22 1 22 5555555555 222222 11 1 1 1 1 1 333333 222 1 111 1 1 1 1 1 222 11 1 222 222 4444444444444444444 11 11 1 11 111 22222 2222222 11 222222222 1111 2 11 22 111111 3333 1 11 1111 999999999999999999999999999999999999999999999 5555555555555555 11111 222222222 22222222 8888888888888888888888888888888888888888 22222222 2222222 11 11 22222222 1 1 1 3333333 1 1 222222 111 1 222222 1 1 1 1 1 1 1 11 1 333333 1111 222 1111 11111 22222222 2222222 11 22222222 555555555555555 222 2222 1 222222 111 111111 111 2222222222 111 11 1 11 2 1 222222 1 111 8888888888888888 22222222 222 1111 1111111 11 2222222 111 1
lowQualScore : 777 77777 0 1 0 1 777 3 000 0 1 1111111 0 33 7 66 1 3 333 6 0 88 0000 5 5 7 3 2222 33 7 33 7 1 55 7 7 6 3 00 1111111111 444444 33 3 7 2 3 3 7 1 3 6 999999 555 3 333 1 3 3 3 3 3 6 333 88 3 333 555 4444444444444444444 88 88 7 6 2 33 444 55555 2 6 6666666 8 8 8 8 11 8 444444444 4444 8 8 8 3 3 8 88 0 0 11 8 8 1 0 00 999999 0 6 99 77 99 0 6 3333 7 3 6 5 9 2 6 6 2 6 3 1 2 1 8 11 66 5 8 0 8 8 5 7777 333333333333333333333333333333333333333333333 3 1 1 6 6 6 1 9999999999999999 6 6 5 6 55555 99 6 5 6 6 6 6 666666666 6 11111111 0 8 1 1111111111111111111111111111111111111111 99 6 44444444 1111111 1 55 8 8 0 0 44 8 11 8 8 8 8 8 8 8 0 66666666 88888 8 4 0 9 0 2222222 1 2 0 0 0 0 222222 777 0 888888 0 3 0 0 0 0 2 0 0 22 0 3 0 2 2 2 0 2 111111 1 99 6 0000 111 99 4444 6 66666 6 99 6 6 6 99 22222222 0 0 6666666 11 8 99999999 88 000000000000000 000 8 8 2222 5 0 8 8 8 8 1 0 0 8 0 3 0 8 8 333333 8 8 8 8 666 3 1 5 444444 111 3 77 2222222222 5 111 5 8 11 0 3 6 8 11 0 8 0 8 8 8 0 8 0 0 0 0 0 77 1 6 111111 1 6 77 99 3 6 6 111 4444444444444444 6 6 2 99 8 8 8 8 3 8 99999999 8 1 88 1 666 7777 8 3333333 11 7777777 8 444 0
lowQualScore : ... ..... . . . . ... . ... . . ....... . .. . .. . . ... . . .. .... . . . . .... .. . .. . . .. . . . . .. .......... ...... .. . . . . . . . . . ...... ... . ... . . . . . . . ... .. . ... ... ................... .. .. . . . .. ... ..... . . ....... . . . . .. . ......... .... . . . . . . .. . . .. . . . . .. ...... . . .. .. .. . . .... . . . . . . . . . . . . . . . .. .. . . . . . . .... ............................................. . . . . . . . ................ . . . . ..... .. . . . . . . ......... . ........ . . . ........................................ .. . ........ ....... . .. . . . . .. . .. . . . . . . . . ........ ..... . . . . . ....... . . . . . . ...... ... . ...... . . . . . . . . . .. . . . . . . . . ...... . .. . .... ... .. .... . ..... . .. . . . .. ........ . . ....... .. . ........ .. ............... ... . . .... . . . . . . . . . . . . . . . ...... . . . . ... . . . ...... ... . .. .......... . ... . . .. . . . . .. . . . . . . . . . . . . . .. . . ...... . . .. .. . . . ... ................ . . . .. . . . . . . ........ . . .. . ... .... . ....... .. ....... . ... .
lowQualScore : 555 22222 2 0 0 0 555 2 222 0 0 5555555 8 88 0 55 0 2 333 7 7 33 0000 5 5 3 3 7777 33 3 33 3 0 33 3 3 7 3 00 3333333333 777777 33 3 3 0 3 3 3 0 3 7 333333 000 3 777 0 3 3 3 3 3 7 333 33 3 333 777 7777777777777777777 33 33 3 7 0 88 000 00000 5 5 0000000 0 0 0 0 00 0 000000000 8888 0 0 0 4 8 0 66 8 8 00 0 0 4 6 00 222222 8 7 22 77 22 3 7 0000 7 2 7 2 8 5 7 7 5 7 2 0 5 0 0 00 22 0 0 8 0 0 6 0000 333333333333333333333333333333333333333333333 2 0 0 7 7 7 0 5555555555555555 7 7 7 7 88888 22 7 7 7 7 7 7 777777777 4 22222222 8 0 0 3333333333333333333333333333333333333333 22 7 22222222 7777777 4 88 0 0 8 8 66 0 00 0 0 0 0 0 0 0 8 88888888 66666 0 2 0 0 0 5555555 0 5 2 8 0 0 888888 555 0 888888 0 2 0 0 0 0 0 0 0 55 0 2 2 5 5 5 2 0 000000 0 22 7 8888 333 22 2222 7 77777 7 22 7 7 7 22 00000000 8 8 0000000 00 0 00000000 88 000000000000000 000 0 0 8888 6 6 0 0 0 0 4 8 8 0 8 6 6 0 0 000000 0 0 0 0 888 2 7 7 444444 999 6 11 4444444444 7 666 7 0 00 8 8 0 0 00 8 0 6 0 0 0 8 0 4 8 8 6 8 33 0 7 222222 7 7 77 22 3 7 7 777 5555555555555555 7 7 5 22 0 0 2 0 8 0 00000000 0 4 66 0 888 0000 0 8888888 00 0000000 0 000 0
consensus : ACCCAAAAGTGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATNCTATACTTAGAATTAGTTTT-ATCTTGCTCNTTG---ATAAGTTCTATTACATT-AA-TGGTATGCAGNAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGNAATATGAGTATA---TACAACGATGCATGGTTT--GATG---GCAGTCAAACAAGAAAATTA-CA-A--AACAAGGCTCAATGTTCACCTTAANTG-TCTCCTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGTCT--------GCC-T--CCTCTTTGGACATCCTTG-AGAACTCTCTGCCTTTT-AGA-GACCANTTCCACATGCT-GGCTGTA--C--CTGGGG--AAC-TTTGGATTAAANGTAA-TTC-GGA-TT-TGTT-CTTCGTGT---TG--TTTTCA-CGA---CACCT--TTTGC-C--GCCAGC-C---GCGCCTCACCTG--TTCAG--TGGTCAGGCCGGTCTTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTG-----G---TACCA-A--T-GATTTA-G-AA-TATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACGTTTCCCTCTTAATGGTCTC-C---AAACTTAATTGGATGCTGGTTTC-C--AG-NGA--TAGACAGGGT-GT--TTGAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTG-TTAAGTACATTG----GT----TCCATGCACATGAA-ATTCTTGCTCTCT--T-ATC--C-TATCTTTCTCTTGAGGGNATTGCTTTGT-TGAA-TTT-CGTCTGGTG-T-GTTA-CA--AA-TATTTCC-TCTCCTCT-AATAG-GACTG-TTGTCACTA----AGGC--TA-AAATGGGA-TGAGTTGATAGA-GT-T-GAAGGC-AGTTTC---------ACGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGG-----------------A-------AGCAG--GT------TGG--GC-AG--------ACGTTGGGAGAA-------ACGCTATGATCACTGGGG--GAGGCTG-TAGGCAACACA-GAAGCAGGTGGGCAGGCA-TCGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TCTG-T-GA---AAGCANCAA-GCATCTTCT-GCGGT-AATTCCGACTC-ATT-------CACTGGCCTGNTTGAGGATGTCCAC-ACCAC-TGTCCACTTGCAATGAC-GG--CTTG---GTTG-GAGTTAAT------CGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCGCTG-AAGCTG-AGATGAGAAC-TGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATCGGTGAGAAACGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--CGAGGAAGAA-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGGCAA-A-TACACCTATTGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATG-AGTTTT-GGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-A-TTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--GGAAGGC-TTGA-T-GA-A-NG-CAA-T-CCT-CTGCAA-GGACATCCT--GGAGCTNGCTGTAAATGGGATTTCTCTGCATTTGGTT-GAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG-CTGGAATGT-GGTGTTTTGACTGGTCTGTTTGGGAAAGC-GATGGNTGGAGG-TGAGAAGGTATTC--T--CCTCTATCT-GT-NATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCC-GTAGTTGTTGAGGC-GAA-CTT-T------GGT-AA-GTGCTGTACATCTGAGTGGC--AGG-A-TACTGCTGCT-GCATG-TA--------CTTCT-GATCTGTACTG-TAGAAGNCC-TGGGTAAC----TCTGTT-GGA--T--GTGTCTGTT--GCCGTAGG----TG-AAGAAA--CTTG-TCTTCCATTCT
Reference ( family-6572 ) : ACCCAAAAGTGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATNCTATACTTAGAATTAGTTTT-ATCTTGCTCNTTG---ATAAGTTCTATTACATT-AA-TGGTATGCAGNAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGNAATATGAGTATA---TACAACGATGCATGGTTT--GATG---GCAGTCAAACAAGAAAATTA-CA-A--AACAAGGCTCAATGTTCACCTTAANTG-TCTCCTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGTCT--------GCC-T--CCTCTTTGGACATCCTTG-AGAACTCTCTGCCTTTT-AGA-GACCANTTCCACATGCT-GGCTGTA--C--CTGGGG--AAC-TTTGGATTAAANGTAA-TTC-GGA-TT-TGTT-CTTCGTGT---TG--TTTTCA-CGA---CACCT--TTTGC-C--GCCAGC-C---GCGCCTCACCTG--TTCAG--TGGTCAGGCCGGTCTTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTG-----G---TACCA-A--T-GATTTA-G-AAATATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACGTTTCCCTCTTAATGGTCTC-C---AAACTTAATTGGATGCTGGTTTC-C--AG-NGA--TAGACAGGGT-GT--TTGAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTG-TTAAGTACATTG----GT----TCCATGCACATGAA-ATTCTTGCTCTCT--T-ATC--C-TATCTTTCTCTTGAGGGNATTGCTTTGT-TGAA-TTT-CGTCTGGTG-T-GTTA-CA--AA-TATTTCC-TCTCCTCT-AATAG-GACTG-TTGTCACTA----AGGC--TA-AAATGGGA-TGAGTTGATAGA-GT-T-GAAGGC-AGTTTC---------ACGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGG-----------------A-------AGCAG--GT------TGG--GC-AG--------ACGTTGGGAGAA-------ACGCTATGATCACTGGGG--GAGGCTG-TAGGCAACACA-GAAGCAGGTGGGCAGGCA-TCGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TCTG-T-GA---AAGCANCAA-GCATCTTCT-GCGGT-AATTCCGACTC-ATT-------CACTGGCCTGNTTGAGGATGTCCAC-ACCAC-TGTCCACTTGCAATGAC-GG--CTTG---GTTG-GAGTTAAT------CGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCGCTG-AAGCTG-AGATGAGAAC-TGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATCGGTGAGAAACGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--CGAGGAAGAA-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGGCAA-A-TACACCTATTGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATG-AGTTTT-GGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-A-TTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--GGAAGGC-TTGA-T-GA-A-NG-CAA-T-CCT-CTGCAA-GGACATCCT--GGAGCTNGCTGTAAATGGGATTTCTCTGCATTTGGTT-GAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG-CTGGAATGT-GGTGTTTTGACTGGTCTGTTTGGGAAAGC-GATGGNTGGAGG-TGAGAAGGTATTC--T--CCTCTATCT-GT-NATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCC-GTAGTTGTTGAGGC-GAA-CTT-T------GGT-AA-GTGCTGTACATCTGAGTGGC--AGG-A-TACTGCTGCT-GCATG-TA--------CTTCT-GATCTGTACTG-TAGAAGNCC-TGGGTAAC----TCTGTT-GGA--T--GTGTCTGTT--GCCGTAGG----TG-AAGAAA--CTTG-TCTTCCATTCT
gi|1 : ACCCAAAAATGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATGTTATACTTAGAATTAGTTTT-ATCTTGCTCTTTGGTAATAAGTTCTATTATATT-AAATGGTATGACGTAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGTAATATGAGTATA---TA--ATGATGCATGGTTT--GATG----CAGTCAA-CA-GAAAA--A-CACA--AACAAG-CTCAATGTTCAC-TTAATTA-TC--CTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGT-T--------GCC-T--C-TCTTTG-ACATCCTTG-AGAACTCTCTGC-TTTT-AGA-GACCATTTCCACATGCT-GGCTGT---C--CTGGG---AAC-TTTGGAT--AAAGTAA-TTC-GGA-TT-TGTTTCTTCGTGT---TG--TTTTCA-CGA---CACCT--TTTGC-C--GCCAGCACA--GCGCTTCACCTG--TTCAG--TGGTCAGGCCGGTTTTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-GGTTGTC-CAGG--TGGG-TCTC-----G---TACCA-A--T-GATTTA-G-AA-TATCACGAGAC-TT-TGAGGCC-TGGCTTGGAGA--GCA-G-ACATTTCCCTCTTCAT--TCTC-T---ATACTTAATTGGATGCTGGTTTC-C--AG-AGA--TAGACAGGGT-GT----GAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGG-TCAGTCCTGACAGCCT-CACCAGCTCGT--CTAC--CGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAGTTG-TTAAGTACATTGTGAAGT----TCCATGCACATGAA-ATTCTTGCTTTCT--TCATC--CCTATCTTTCTCTTAAGGGGATTGCTTTGT-TGAAATTT-CGTTTGGTG-T-GTTAGCA--AAATATTTCC-TCTCCTCT-AATAG-GACTGTTTGTCACTA----AGGC--TA-AAATGGGA-TGAG-TGATAGA-GT-T-GAAGGC-AGTTTC---------ATGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGG-----------------A-------AGCAG--GT------TGG--GC-AG--------ACGTTGGAAGAA-------ACGCTATGATCACTGGGG--GAGGCTGTTAGGCAACACA-GAAGCAGGTGGGCAGACA-TTGG--GAGAAA-CAC-TATG-ATCACTG-GG-GA-ACATATTTT-TCTG-T-GA---AAGCATCAA-GCATCCTCT-GCAGTAAATTCC-ACTCAATT-------TACTGGCCTGATT-AGGATATCCAC-ACCACTTGTCCACTTGCAATGACAGG--CTTG---GTTG-AAGTTAAT------TGCAGGAT-CCAC-TC-CTG-TTCAGAGG-AGGCACTGCTG-CCACTG-AAGCTG-AGATGAGAACTTGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATTGATGAGAAATGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--TGAGAAAG-A-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AA--GCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAG--AA-A-TACACC-AT--GACTTTGAAGCATATTGGG-ATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATGAAGTTTT-GGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-ATTTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--AGGAGGC-TTGA-T-GA-ACTG-CAATT-CCT-CTGCAAGGGACATCCT--GGAGCTTGCTGTAAATGGGATTTCTCTGCATTTGGTT-AAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG--TGGAATGTAAGTGTTTTGACTGGTCTGTTTGGGAAAGT-TATGGGTGGAGGTTGAGAAGGTATTC--T--CCTCTATCT-GT-GATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCT-GTAGTTTTTGAGGC----------------GGT-AA-GTGCTGTACATCTGATTGGC--AGG-A-TACTG-TGCT-GCATGTTA--------CTTCT-GATCTGTACTA-GAGAAGGCC-T-GGTAAC----TATGTT-GGA--T--GTGT-TGTT--GCCAT-GA----TG-AAGAAA--CTTG-TCTTCCATTCT
gi|10 : TGGTCT-GGGTCCAGA-GGGTGAAG--GG----CGTTGA-TTGA-A-GG-CAA-G-TCC-CTGCAA-G-ACATCCCTGGGAGCTGGCTGTAATTTGGATTGCTCTGCATTTGGTTTGAAGAACTGGGAAGGG--GGA--GC-TTAGTGGCTGTTCTTGTATGTTCTGTGGACTGGAATGT-GGTGTTT-GGCTGCTCTGTT-GGGAAAGT-GATGGGTGGAGG-TGAGAAGGTATTC--C--TCTCTATCT-GT-GATCTGTGGGTAAAGACAGGGAAAGCTCTTGTCC--TAGATGTTGAGGC-------T-T------GGT-AACGTGCTGTACATCTGAGTGGC--AGGCATTACTGCTGCT-GCATG-TA--------CCT-T-GATCTGTACTGTTAGAAGTCTGTGGGGAAC----TCTGTTGGGA--T---TGCCAACT--GCTGTAAGGCCTTG-AAGAAA--TTTGATCTTCCATTCTccag
gi|11 : A-TGAATCCGTAAA-GT-T-GAAGGC-AGTCTC---------ACATTGAGT--T---A-TATCCAGC-CCCTGAAACACTGGAGCTGAAGCTGTAGGGTA-------GGCAG--G-------TGG--GC-AG--------ATGTCGGGAGAA-------ACACCGTAATCACTGGGG--G
gi|11 : CACTGGAGCTGAAGCTG-TAGG----GTA-G--GCAGGTGGGCAGATG-TCGG--GAGAAA-CAC-CGTA-ATCACTG-GG-GGGAGATATCGC-TTTG-AAGA---AAGCTGCAA--CATCTTCT-GCTGT-AATTTCGAATA-AGT-------CACTTTCCTGTTTGATGCTGTCCAC-ACCAC-TGTCCACTTGCAATGG-------TTG---ACTG-GAGCCAATGAAATTCACAGAAT-CCTTTTC-CTG-TTCAGAGG-AGGCACTGCTA-CTGCTA-CTGCTG-CGAGGAGAAC-TGGAGGGGGAAATGATT-TGTGATCTCTGTTGCTGTGATAAAGCAGTGATGACATTCAAGTCCGGTGTATTGGGGAGAACCGGAGCA------TGTTTGgagatatcgctttgaagaaagctgcaacatcttctgctgtaatttcgaataagtcactttcctgtttgatgctgtccacaccactgtccacttgcaatggttgactggagccaatgaaattcacagaatccttttcctgttcagaggaggcactgctactgctactgctgcgaggagaactggagggggaaatgatttgtgatctctgttgctgtgataaagcagtgatgacattcaagtccggtgtattggggagaaccggagcatgtttg
gi|12 : atgaatccgtaaagttgaaggcagtctcacattgagttatatccagcccctgaaaCTGCTGTGAGACTC--G-CTGGA--TGAGAAAGA--TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGG-AA-A-TACACCTA-TGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTG-TTG-AATG-AGTTTT--GT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-A-TTGTAGTCGTGGGTTAT
gi|13 : TAGCGACTG-TTGTCACTATCCTAG-C--TA-AAAGGGGA-TGAGTGAATAGATGTCT-GAAGGCGAGTTTCCCTCGTTTAACAT-GAGTCTG---G-A-TCTGAC-TCGTGAA-CACTG------------------A-------AGCAG--GT------GGA--GCGAG--------ACGTTGGAAGAATCAAATCGCTCTATGTTCACTGGGGT-GAGGCTG-TAGGCAACACA-GAAGCA-GT-GGCAGG-A-TCAGTTAAGAAACCACTTATG-ATCACTGAGG-GG-ACATATTTC-TC-A-T-GATCGAAGCGTCAGTGCATCTTCT-
gi|14 : TAATTGGATTACGGTT-C-C--AG-TGA--TGGACAGTGTTGTAGCTGAAATC-------------TGCTTGGGC-CT-CAACT-TGTT-------TTGCAATTCAGTC-----------CA--AG---------A----GTTGTCAGTGG--T-GTGG-TAC-AGACGTGGGGCGGGCA-CCAATTG-TTCAGTACATTG----GT------------CA-GAATATCCATCCT---------TC--C-AATCTTTCTCGTGAGGGATTTACTTTGC-TGAA-CTT-CCCCTGGTGTT-GTAA-CA--AG-CATTTCCTTCTCCTCTGAATGG-Gtgcag
gi|15 : atgAAAGTGGAATGAAATGAAAGGAAAATTAAAAAAATCCAAGAAACGACATTCAACATTTAGAATTACTTTTTATCTTACTTGTTG---ATAAATTCTTTTACA---AA-TGAGATGCAAAAATTCAGTATGAT------ACATGAGCACTGATTTGATTGTA--ATGAATTA-GAAATATGAGTATA---TACAATAATACATGGTTT--GATGCATGCAG
gi|16 : ACCCAAAAATGGAATGAAA---GAGGAA-G---AAATAACCGAAGAAGCATTATGTTATACTTAGAATTAGTTTT-ATCTTGCTCTTTG---GTAAGTTCTATTATATTAAA-TGGTATGCAGTAAATAAGTATGATAATGATATATGATCAATGATTTCAATATATGATAAAAT-AGTAAT-TGAGTAatagaaca
gi|17 : aaaacGTTCTCTAAT-ATT--C-TTTCTT-CTCTTGAGGATAT-ACTCT-C-TGCC-TTC-CACC-GGTG-TTGTT--CATTGA-TATTTCC-TCTCCTCT-AATAG-GA-TG-TAGTCACCA----AGGCTGTA-AATTGAGATTTAGTTGAT
gi|18 : ttagtccaggcccatgaaaagttgttctgtttcttgattccggaGAAAGC-GGTGGCTGGAGG-GGAGAAGATATTC--TGTCCTC---CT-GT-TATCTGTGGATAA--GCTGGGAAA-CTC-TGGCC-GTAG-TGCTGGGGCTGAA-CTT-TTG----GGT-AA-GTGCTGTACATCTGAGTGGC--tca
gi|19 : GGAGCAAGAGATTGTTTGCTGTAAGACCC--A-ATGGAAACAAGGGAGAACTGTCGAA--G----GAATGGATCCTGAG-GATGGTACTCGCATGTGG-GT--GAG-TCCAGTATT--ATTG
gi|2 : AAGTGGAATTTAA---GGGGAAA-----AATAACCAAAGAAGAATTATCCTATACTTAAAATTAGTTTT-ATCTTGCTCATTG---ATAAGTTCTA--ACTTT-AA-TGATGTGCAGGAAATAAGTATGA------TATATGACCAATGATTTCATTATG--AT-AAATAAGGAATATGAGTATAAGGTACAACGATGCATGGTTTTGGATG---GCAGTCAAACAAGAAAATTACCA-ACCAACAA-GTTCAATG-TCA-CTTAAAT--TCTCCTCTTCCAACATGTTGAGACATTCTAAGGGCATCATCTAGTCT--------GCCTT--CCTCTTT-GACATCCTTG-AGAACTCTCTGCCTTTT-AGAGGACCTATTCCACATGCTAGGCTGTAACT--CTGGGGACAACTTTTGG--TAAAGATAA-TTCGGGA-TTATGTT-CTTCGTGG---TG--TTGGCACCGACTTCATCTTATTTGCACAAGCCAGC-C---G---CTCACCTGCTTCCAG--TGGTCAAACC-GTCTTC--ATGCGCC-----AA-CTCTTTTTTCTGCTCTTC-------AGTAGGG-TATGG-G-TTTTCGCAAGATTTGC-TTTG-----G---TACCA-ACTT-GCTTTAGG-AAATAT-ACAACAT-TTGGGAGGCCATGGGCTGGAAAAGGCA-GAACGTATCCTTATTAATGGTCTT-C----AATTTAATTGGATGCTGGTTTCGC--TG-TGACTTGGACAGGGT-A---TTGAAA-CACCG-CACTCTTTTG-TTGGCCAAT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCTCCACCAGCTCGTGCCTACTTCGGTGTCGGTGGGATAATGGGTACTGGGTGTGGCTCTGGTATCCAATTG-TT-AGTACATTG----GT----CTCAT-C---------------CTCTCT--T------------TTTCTC-TGA-GGTATTGCTTGGT-TGGA-TGT-CCTCTGGTG------------------------------T-AATAG-GACTG--AGTCACTG----TGGC--TATAAATGGGG-TGAATTGATAAA-GT-TGGAAGGC-AATTTC---------ATGTTGAGC--GTAAGTAATCGAACATGGTGAAGCACTGG-----------------GGCTGGATAGCTGTAGTGCAACATAGAAGC-AGGTGGGCAGACTTTGGGAGAA-------ACACTATGATCACTGGGG--AAAGCTG-TAGGCAACACACGAAGCAGGTGGGCAGGCACTTGG--GAGAAA-CAC-TATGAATCACTG-GGAGG-AAATATTTCAACTG--------AAGCAAC-A-GCATCTTTTCGCGGT-AATTCCAACTC-ATTCTTCCCCCACTGGCCTGTTTGAAGGAGTCCACAACCAC-TGTCCACTTGCAATGAC-GGACCTAG---GTCGTGTCTTAAT------CGCAGAATGCCACTTCACTGTTTCAGAGGAAGGCACTGCTGCCCACTGAAAGGTGAAGATGAGAA--TGGTGGGAGAAATGGTTGGGTGATTTCTGTTTC-------AA-----------------GTCAGGTGTATCAGTGAGAAAC--AGCAG-----CATCTG--GT--GACTTGAG-CTTGA--C--CGAAG-A-TGTCAGA--GGAGAAAGTGGAATCAGAGCGAAGATGC-----TATGGAGT--G-GCTCCA-TATT--GTTGAAGGGCA----AGAGGTTGGTTATATAA-CC-------TGAG--GAAAAC--------ATGA--TTGA---------------TGCA-GCAAGA-TACATCT-TTGGATGTTGAAG-ATATT-GGAATTGTAGA-GAGAAAGGCCCAGGAATTTGGCAAGATTCTGAGAGCAGGCTCTGT-GTTGGG-TTGTG-TGTTGG-GATG-ACTTTT-GTG--GGATCTGG-AATTT-TGCTGGGAAGCAGACCGCTGTTGTATCCAATTGTTAA-TTGTTATCATGGGTCACAGTCTGGGAT---CAGGGGTGGAAGTGGAAGGC-TTGATT-GA-A-GGCCAA-TGTCT-CTGC
gi|20 : agaacacctTGGAGCACTGG-----------------GGC-----AGCAGCTGTGGGG--TAG--GC-AG--------ACGTTGGGAGAA-------ACctgggtaagggg
gi|3 : tgaattaggactaaccatctgtTGCTGTGAGACTT--GGCTGAA--CAAGGCGGAA-TGTCTGAAGG----AATCGGATCCTGAG-GACGG-AC-----TATGG-GTGGG-G-TCCA-TATTGGGTTGAGA---AGCAGAGAGGCTGGTTATATGATCCATATGGTTGAGCAG-AGGCTGGTTATTATGAGTCTGAGGAAACATGATTTGATGCATGCAA-ATTACACCT-TTGGACTTTGAAGCATATTGGGCATAGTAGATGAG-AAGGCCC-GGAATATGGC-AGATTCTGAGACT-GGCTCTGTAGTTGGGTTTGGGTTGCTGGTACTG-ACTTTTAGATTGGGGTCTGGAAATAACTGCTAGGAAA-GAG-CAATGCCGTATCC-ATTATC---TTCCA-------GTTA----CT-GGAT---------TGGA------------TG--T-GACA-GG-CAT-TACCTACCGCAA-GGACATTCT--GGAGCTGGCTGAAAATGGGATTCCTCTGCATTTGGTTGGAAGAACTGG-GTGGATTGACAGGCTTTCATGGTTGTT-TTGT-TGTGCT-TGG-CTGG-ATGT-GGTG-TTTGACTGG-CTGTTTGGAAAAGCGGGTGGCTGGAGG-GGAGAAGAT-TTCTGT--CCTGCACTT-GTATATCTGTGGATAA--TCTGGGAAACCTC-TGGCCAGTAGTCGCTGGGGCTGAA-CTTATTTTAGGGGTAAA-GTGCTGTAACTCTGAGTGGCAAAGC-A-TACTGCTGCTAGC-TG-TACACAAAAGCATCTGGATATGTTCTG-TAGAAACCT-GGGGTAACACTATCTGTT-GGA--T--G-GTCTGTTGAGGCGAAGG----TGTAAGAAAGTGTTG-TATTCC
gi|4 : tTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTC-----G---TACCA-A--T-GATTTA-G-AA-TATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACATTTCCCTCTTCAT--TCTCTT---AAACTTAATTGGATGCTGGTTTC-C--AG-AGA--TAGACAGGGT-G---TTGAAA-CACCG-CACCCTTTTG-TTGGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGCAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAGTTG-TTAAGTACATTG----GTGAAGTCCATGCACATGAA-ATTCTTGCTTTCT--TCATCCTC-TATCTTTCTCTTAAGGGGATTGCTTTGT-TGAA-TTT-CGTTTGGTG-T-GTTAGCA--AA-TATTTCC-TCTCCTCT-AATAG-GACTG-TTGTCACTA----AGGC--TA-AAATGGGA-TGAGTTGATAGA-GT-T-GAAGGC-AGTTTC---------ATGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACT-G-----------------A-------AGCAG--G-------TGG--GC-AG--------ACGTTGGAAGAA-------ACGCTATGATCACTGGGG--GAGGCTG-TAGGCAACACA-GAAGCAGGTGGGC---CA-TTGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TCTGAT-GA---AAGCAC--A-GCATCTTCT-GCAGT-AATTCC-ACTC-ATT-------TACTGGCCTGATTGAGGATATCCAC-ACCAC-TGTCCACTTGCAATGAC-AG--CTTGTTAGTTG-AAGTTAAT------TGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCACTG-AAGCTG-AGATGAGAAC-TGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATTGATGAGAAATGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--TGAGAAAG-A-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGG-AA-A-TACACCTA-TGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTG-TTG-AATG-AGTTTT--GT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-A-TTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAA--GGAAGGC-TTGATT-GA-C-TG-CAA-T-CCT-CTGCcatgcattcatcagagaaggtgcctgccacaactgaagaacaaggagcttagacaagtgcaataccaatatttgatgtgtatgaagaagtttgttgtctcagaattctgagcacccaataatttcccataggaaaggatgctttcggtggtaaggttatgatataaaagaaggagcacttgactgagactcagtacataagtttataagcgcgctggtggtgggcatgctccaacattctgagactaactcagcatggccaaacttcctcgcatccacgctcttccccatcacgtagtgccagtaattttgcaatccatcgacagaacccagggtttactttgtgttttctaaaaaattagtcaggaaataatcacttcagaactagcactacacactatgataaacacacaatcggataataactttataagtggaaagagtgggaattaggtcactgtaattgtgtaatgattagtctttaatttggagtatgggacagcgagcaaaggt
gi|5 : AGTCT-GGAT---GA-GGGTGGAA--GGAAGGC-TTGA-TTGA-C-TG-CAA-T-CCT-CTGCAA-GGACATCCT--GGAGCTTGCTGTAAATGGGATTTCTCTGCATTTGGTT-AAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG-CTGGAATGT-AGTG-TTTGACTGGTCTG-TTGGGAAAGT-TATGGGTGGAGG-TGAGAAGGTATTC--T---CTCTATCT-GT-GATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCT-GTAGTT-TTGAGGC-G--------------GGT-AA-GTGCTGTACATCTGATTGGC--AGG-A-TACTGTTGCT-GCATG-TA--------CTTCT-GATCTGTACTA-GAGAAGGCC-T-GGTAAC----TATGTT-GGA--T--GTGTCTGTT--GCCAT-GA----TG-AAGAAA--CTTG-TCTTCCATTCT
gi|6 : AGTCT-GGAT---CA-GGGTGGAG--GGAAGGC-----------------AA-T-CCT-CTTCAA-GGACATCCT--GG------TTGTAAATGAAATTTCTCTGCATTTGGTT-GAATAACTGG-AAAAA--AGAAGGC-TTCATATTAGTT-TTGC-TGTTCTGTTG-CTGGAATGT-GGTG-CTTGACTTGTCTG-TTGTGAAAGT-GATGGCAGGAGA-TGAGAAGATATTC--T---CTCTATTTGGT-TACCTGTGGACAA--GCAGAGAGC-CTC-TGTCC-GTA---------GC-GAATCTC-TA-----GGT-AA-GTTCTGTACATC-----------AG-A-TGCTGATGCT-TCGTG-TA--------CTTCT-TATGTATTCTG-TAGAATTCC-C-TGTAAC----TCTGGG-GGAGGTAGGTGTCTGTT--GCCAC-GG----TG-AAgaagagcctgtacagtcgaacaacgagcttaagtctccaatatttgatttatgaagaatttttggagtctcaattcagcataaatgatgattttcaatgaaggatgctttgaattctgatttgatgatagcttgtacatggagctggcttcagtccagtatatatagctggtggtggacatgttctctattacctgagactctcgacttcatgccaacctcctcctcactcctctccatgccagccattgcaatccatcctcgacattgttttccttgtgcagtatatcaatatacatccagaaaaattgaattcatagtaatttctgacaattacacttatcaaattatgtttacagtgcagttcagctttaacagtgggaatgggacacctgtaattgggtaataatgattagattaattggataatggaggagcccaggtgt
gi|7 : AATTA-CA-A--AACAAGGCTTCATGTTCACCTT-AGTGCTTTCCTCATCCAACGTA-TGA-ACATTC-AAGGACAATGT--GGTTTCTTACGTGGCT-TCACTTCTTTGGATATCCATGTAGA--CCTCTGCTTTTCAAGA-G-CCACTTACACATGCT-GGCT-TA--CTGCTTTGG--AAC-TTTGGATTAAACGTAATTTC-GGACTT-TGTT-CTTC-TGTTTATGTCTTTTCA-CGA---CACC---TTTGCTC--GC--GC-CCAGACGTCTCACCTG--TTCAGTTTGG-CAGGCCGGT-TTCTAAT-T-CCTTCATATGCTCAT-CTTCTGTGATTCCTCGCTTTGTGGGGATGGAGTG-TTGTC---AG--TGGGATCTGCACCAGCTTTACCACA--TAGATTTA-GCAAGTATC-CGAGAC-TT-TG-GGCCAT-GGCTGGAGA--GCACG-ACATTGTCCTCTCATTG--CTC-CGTTAAACTTAAGTTGATGCTGGTTTC-CCAAGCAGA--TAGA-AGGGT-G---TTGAAA-CACCGCCGCCTTTTTGTTTTG-C-ATGCCACTCTGTTCAC-TGTTTGC-GGTCAGTCTTGACAGCCacattccttgaagctgaggcctgttacagtatcactattgtttatgattacagaggtaaagtgaacaaacactcagcatcaggaattttgtacgtcctctaccatcgataggcttttgatgacttacttgggactaagctcactcagagagcaggatgagcaccagtcgaacagtatatatagcgtgtgttggtacaactctctattacctgagactctcaacttcatcctttgtccttctcatactccacccattagtgccagtaaatctgacacaatacctccacaagatgtcttctttagtgtattatgagcaaaattattagtcaatattataacttcaaacattaattacaacttatgtgcaggaatttgtttatataagatggccccatgttcagctttatagagtgacccgcggcaatcaaacacctcgttaagctacatgcgtgtagattaattgggatggagccaaggaattgg
gi|9 : CTATTGTTC-------TGTGAGG-TAGGG-G-TTGTC-CAGA--TGAG-TTTG-----G---TATCA-C--T-GATTTA-G-AA-CATCG-GCGACATT-GGAGGCCATGGGCTGGAAA--GCA-G-ACGTATCCTTCTTAATGGTCTT-C---AA-TTTAATTGGATGCTGGTTTC-C--AG-TGA--TTGACAAAG--GTA-TTGAAACACCCG-CACC-TTTTGTT-GGCC-AT-C-ACT-TCTTCACTTGTTTGCGGGTCAGTCCTGATAGTCT-CACCAGCTCGT--CTACTTCGCCGCCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTGTTTAAGTACATTG----GT----TTCAT-C---------------CTCTCT---------------TTTCTCTTTGAGATATTGCTTTGTATGAA-TGTATGTCTGGTG------------------------------T-AATAG-GACTG-TTGTTGCT-----AGGC--T-------------AGTTGGTAGA-TT-T-GAATGC-AATTTC---------Agt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TATACAGTGGAACAAAGTGCTGAAGAAGGTCTCCAATGTTTGATGATGAAGGCTTCAGTTCACTATGCAGCAATTCTGGAAATGTCTTTGAATTCTTGTTGAGTGATAGTTATGGTAATGGGACAGAGCCATCCAGGACAGTATATATAGCTGGTGGTGGACATGTTCTCTATTACCTGAGACTCCTGTCATGCCAACCTCCTCCTCACTTCTCTCCATAGAGCCAGCAATGGCAGTTCCTAAGATTGTTTTGGTTGTGCAGTGTATCCAGTATGCATCCAGCTAAATTAAATTCCTAGTAATTTGTTACCATGACACTATCAAAACATGTATAGAGCAGGCCAGCTTGTACAGTTAGACTTCCATACCTATAATTGGGTAATGATTAGAGCCTGTTGACAATTGAGGAGCCCAGGTGAGA
Unaligned ( gi|21 ): GTGGGAATTAGGCACCTGTAATTGTGTAATGATTAGTTTAATTGGATAATGGAGGAGCAAAGGT
Alignments
lowQualScore : 111 22222 1 111 111 1 3333333 11 222 11 3333 1 1 1 2222 11 11 22 1 22 5555555555 222222 11 1 1 1 1 1 333333 222 1 111 1 1 1 1 1 222 11 1 222 222 4444444444444444444 11 11 1 11 111 22222 2222222 11 222222222 1111 22 11 22 111111 3333 1 11 1111 999999999999999999999999999999999999999999999 5555555555555555 11111 222222222 22222222 8888888888888888888888888888888888888888 22222222 2222222 11 11 22222222 1 1 1 3333333 1 1 222222 111 1 222222 1 1 1 1 1 1 1 11 1 333333 1111 222 1111 11111 22222222 2222222 11 22222222 555555555555555 222 2222 1 222222 111 111111 111 2222222222 111 11 1 11 2 1 222222 1 111 8888888888888888 22222222 222 1111 1111111 11 2222222 111 1
lowQualScore : 777 77777 0 1 0 1 777 3 000 0 1 1111111 0 33 7 66 1 3 333 6 0 88 0000 5 5 7 3 2222 33 7 33 7 1 55 7 7 6 3 00 1111111111 444444 33 3 7 2 3 3 7 1 3 6 999999 555 3 333 1 3 3 3 3 3 6 333 88 3 333 555 4444444444444444444 88 88 7 6 2 33 444 55555 2 6 6666666 8 8 8 8 11 8 444444444 4444 8 22 3 8 88 0 0 11 8 8 1 0 00 999999 0 6 99 77 99 0 6 3333 7 3 6 5 9 2 6 6 2 6 3 1 2 1 8 11 66 5 8 0 8 8 5 7777 333333333333333333333333333333333333333333333 3 1 1 6 6 6 1 9999999999999999 6 6 5 6 55555 99 6 5 6 6 6 6 666666666 6 11111111 0 8 1 1111111111111111111111111111111111111111 99 6 44444444 1111111 1 55 8 8 0 0 44 8 11 8 8 8 8 8 8 8 0 66666666 88888 8 4 0 9 0 2222222 1 2 0 0 0 0 222222 777 0 888888 0 3 0 0 0 0 2 0 0 22 0 3 0 2 2 2 0 2 111111 1 99 6 0000 111 99 4444 6 66666 6 99 6 6 6 99 22222222 0 0 6666666 11 8 99999999 88 000000000000000 000 8 8 2222 5 0 8 8 8 8 1 0 0 8 0 3 0 8 8 333333 8 8 8 8 666 3 1 5 444444 111 3 77 2222222222 5 111 5 8 11 0 3 6 8 11 0 8 0 8 8 8 0 8 0 0 0 0 0 77 1 6 111111 1 6 77 99 3 6 6 111 4444444444444444 6 6 2 99 8 8 8 8 3 8 99999999 8 1 88 1 666 7777 8 3333333 11 7777777 8 444 0
lowQualScore : ... ..... . . . . ... . ... . . ....... . .. . .. . . ... . . .. .... . . . . .... .. . .. . . .. . . . . .. .......... ...... .. . . . . . . . . . ...... ... . ... . . . . . . . ... .. . ... ... ................... .. .. . . . .. ... ..... . . ....... . . . . .. . ......... .... . .. . . .. . . .. . . . . .. ...... . . .. .. .. . . .... . . . . . . . . . . . . . . . .. .. . . . . . . .... ............................................. . . . . . . . ................ . . . . ..... .. . . . . . . ......... . ........ . . . ........................................ .. . ........ ....... . .. . . . . .. . .. . . . . . . . . ........ ..... . . . . . ....... . . . . . . ...... ... . ...... . . . . . . . . . .. . . . . . . . . ...... . .. . .... ... .. .... . ..... . .. . . . .. ........ . . ....... .. . ........ .. ............... ... . . .... . . . . . . . . . . . . . . . ...... . . . . ... . . . ...... ... . .. .......... . ... . . .. . . . . .. . . . . . . . . . . . . . .. . . ...... . . .. .. . . . ... ................ . . . .. . . . . . . ........ . . .. . ... .... . ....... .. ....... . ... .
lowQualScore : 555 22222 2 0 0 0 555 2 222 0 0 5555555 8 88 0 55 0 2 333 7 7 33 0000 5 5 3 3 7777 33 3 33 3 0 33 3 3 7 3 00 3333333333 777777 33 3 3 0 3 3 3 0 3 7 333333 000 3 777 0 3 3 3 3 3 7 333 33 3 333 777 7777777777777777777 33 33 3 7 0 88 000 00000 5 5 0000000 0 0 0 0 00 0 000000000 8888 0 00 8 0 66 8 8 00 0 0 4 6 00 222222 8 7 22 77 22 3 7 0000 7 2 7 2 8 5 7 7 5 7 2 0 5 0 0 00 22 0 0 8 0 0 6 0000 333333333333333333333333333333333333333333333 2 0 0 7 7 7 0 5555555555555555 7 7 7 7 88888 22 7 7 7 7 7 7 777777777 4 22222222 8 0 0 3333333333333333333333333333333333333333 22 7 22222222 7777777 4 88 0 0 8 8 66 0 00 0 0 0 0 0 0 0 8 88888888 66666 0 2 0 0 0 5555555 0 5 2 8 0 0 888888 555 0 888888 0 2 0 0 0 0 0 0 0 55 0 2 2 5 5 5 2 0 000000 0 22 7 8888 333 22 2222 7 77777 7 22 7 7 7 22 00000000 8 8 0000000 00 0 00000000 88 000000000000000 000 0 0 8888 6 6 0 0 0 0 4 8 8 0 8 6 6 0 0 000000 0 0 0 0 888 2 7 7 444444 999 6 11 4444444444 7 666 7 0 00 8 8 0 0 00 8 0 6 0 0 0 8 0 4 8 8 6 8 33 0 7 222222 7 7 77 22 3 7 7 777 5555555555555555 7 7 5 22 0 0 2 0 8 0 00000000 0 4 66 0 888 0000 0 8888888 00 0000000 0 000 0
consensus : ACCCAAAAGTGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATNCTATACTTAGAATTAGTTTT-ATCTTGCTCNTTG---ATAAGTTCTATTACATT-AA-TGGTATGCAGNAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGNAATATGAGTATA---TACAACGATGCATGGTTT--GATG---GCAGTCAAACAAGAAAATTA-CA-A--AACAAGGCTCAATGTTCACCTTAANTG-TCTCCTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGTCT--------GCC-T--CCTCTTTGGACATCCTTG-AGAACTCTCTGCCTTTT-AGA-GACCANTTCCACATGCT-GGCTGTA--C--CTGGGG--AAC-TTTGGATTAAANGTAA-TTC-GGA-TT-TGTT-CTTCGTGT---TG--TTTTCA-CGA---CACCT--TTTGC-C--GCCAGC-C---GCGCCTCACCTG--TTCAG--TGGTCAGGCCGGTCTTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTG-----G---TACCA-A--T-GATTTAG-AAATATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACGTTTCCCTCTTAATGGTCTC-C---AAACTTAATTGGATGCTGGTTTC-C--AG-NGA--TAGACAGGGT-GT--TTGAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTG-TTAAGTACATTG----GT----TCCATGCACATGAA-ATTCTTGCTCTCT--T-ATC--C-TATCTTTCTCTTGAGGGNATTGCTTTGT-TGAA-TTT-CGTCTGGTG-T-GTTA-CA--AA-TATTTCC-TCTCCTCT-AATAG-GACTG-TTGTCACTA----AGGC--TA-AAATGGGA-TGAGTTGATAGA-GT-T-GAAGGC-AGTTTC---------ACGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGG-----------------A-------AGCAG--GT------TGG--GC-AG--------ACGTTGGGAGAA-------ACGCTATGATCACTGGGG--GAGGCTG-TAGGCAACACA-GAAGCAGGTGGGCAGGCA-TCGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TCTG-T-GA---AAGCANCAA-GCATCTTCT-GCGGT-AATTCCGACTC-ATT-------CACTGGCCTGNTTGAGGATGTCCAC-ACCAC-TGTCCACTTGCAATGAC-GG--CTTG---GTTG-GAGTTAAT------CGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCGCTG-AAGCTG-AGATGAGAAC-TGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATCGGTGAGAAACGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--CGAGGAAGAA-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGGCAA-A-TACACCTATTGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATG-AGTTTT-GGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-A-TTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--GGAAGGC-TTGA-T-GA-A-NG-CAA-T-CCT-CTGCAA-GGACATCCT--GGAGCTNGCTGTAAATGGGATTTCTCTGCATTTGGTT-GAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG-CTGGAATGT-GGTGTTTTGACTGGTCTGTTTGGGAAAGC-GATGGNTGGAGG-TGAGAAGGTATTC--T--CCTCTATCT-GT-NATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCC-GTAGTTGTTGAGGC-GAA-CTT-T------GGT-AA-GTGCTGTACATCTGAGTGGC--AGG-A-TACTGCTGCT-GCATG-TA--------CTTCT-GATCTGTACTG-TAGAAGNCC-TGGGTAAC----TCTGTT-GGA--T--GTGTCTGTT--GCCGTAGG----TG-AAGAAA--CTTG-TCTTCCATTCT
Reference ( family-6572 ) : ACCCAAAAGTGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATNCTATACTTAGAATTAGTTTT-ATCTTGCTCNTTG---ATAAGTTCTATTACATT-AA-TGGTATGCAGNAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGNAATATGAGTATA---TACAACGATGCATGGTTT--GATG---GCAGTCAAACAAGAAAATTA-CA-A--AACAAGGCTCAATGTTCACCTTAANTG-TCTCCTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGTCT--------GCC-T--CCTCTTTGGACATCCTTG-AGAACTCTCTGCCTTTT-AGA-GACCANTTCCACATGCT-GGCTGTA--C--CTGGGG--AAC-TTTGGATTAAANGTAA-TTC-GGA-TT-TGTT-CTTCGTGT---TG--TTTTCA-CGA---CACCT--TTTGC-C--GCCAGC-C---GCGCCTCACCTG--TTCAG--TGGTCAGGCCGGTCTTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTG-----G---TACCA-A--T-GATTTAG--AATATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACGTTTCCCTCTTAATGGTCTC-C---AAACTTAATTGGATGCTGGTTTC-C--AG-NGA--TAGACAGGGT-GT--TTGAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTG-TTAAGTACATTG----GT----TCCATGCACATGAA-ATTCTTGCTCTCT--T-ATC--C-TATCTTTCTCTTGAGGGNATTGCTTTGT-TGAA-TTT-CGTCTGGTG-T-GTTA-CA--AA-TATTTCC-TCTCCTCT-AATAG-GACTG-TTGTCACTA----AGGC--TA-AAATGGGA-TGAGTTGATAGA-GT-T-GAAGGC-AGTTTC---------ACGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGG-----------------A-------AGCAG--GT------TGG--GC-AG--------ACGTTGGGAGAA-------ACGCTATGATCACTGGGG--GAGGCTG-TAGGCAACACA-GAAGCAGGTGGGCAGGCA-TCGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TCTG-T-GA---AAGCANCAA-GCATCTTCT-GCGGT-AATTCCGACTC-ATT-------CACTGGCCTGNTTGAGGATGTCCAC-ACCAC-TGTCCACTTGCAATGAC-GG--CTTG---GTTG-GAGTTAAT------CGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCGCTG-AAGCTG-AGATGAGAAC-TGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATCGGTGAGAAACGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--CGAGGAAGAA-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGGCAA-A-TACACCTATTGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATG-AGTTTT-GGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-A-TTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--GGAAGGC-TTGA-T-GA-A-NG-CAA-T-CCT-CTGCAA-GGACATCCT--GGAGCTNGCTGTAAATGGGATTTCTCTGCATTTGGTT-GAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG-CTGGAATGT-GGTGTTTTGACTGGTCTGTTTGGGAAAGC-GATGGNTGGAGG-TGAGAAGGTATTC--T--CCTCTATCT-GT-NATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCC-GTAGTTGTTGAGGC-GAA-CTT-T------GGT-AA-GTGCTGTACATCTGAGTGGC--AGG-A-TACTGCTGCT-GCATG-TA--------CTTCT-GATCTGTACTG-TAGAAGNCC-TGGGTAAC----TCTGTT-GGA--T--GTGTCTGTT--GCCGTAGG----TG-AAGAAA--CTTG-TCTTCCATTCT
gi|1 : ACCCAAAAATGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATGTTATACTTAGAATTAGTTTT-ATCTTGCTCTTTGGTAATAAGTTCTATTATATT-AAATGGTATGACGTAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGTAATATGAGTATA---TA--ATGATGCATGGTTT--GATG----CAGTCAA-CA-GAAAA--A-CACA--AACAAG-CTCAATGTTCAC-TTAATTA-TC--CTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGT-T--------GCC-T--C-TCTTTG-ACATCCTTG-AGAACTCTCTGC-TTTT-AGA-GACCATTTCCACATGCT-GGCTGT---C--CTGGG---AAC-TTTGGAT--AAAGTAA-TTC-GGA-TT-TGTTTCTTCGTGT---TG--TTTTCA-CGA---CACCT--TTTGC-C--GCCAGCACA--GCGCTTCACCTG--TTCAG--TGGTCAGGCCGGTTTTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-GGTTGTC-CAGG--TGGG-TCTC-----G---TACCA-A--T-GATTTAG--AATATCACGAGAC-TT-TGAGGCC-TGGCTTGGAGA--GCA-G-ACATTTCCCTCTTCAT--TCTC-T---ATACTTAATTGGATGCTGGTTTC-C--AG-AGA--TAGACAGGGT-GT----GAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGG-TCAGTCCTGACAGCCT-CACCAGCTCGT--CTAC--CGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAGTTG-TTAAGTACATTGTGAAGT----TCCATGCACATGAA-ATTCTTGCTTTCT--TCATC--CCTATCTTTCTCTTAAGGGGATTGCTTTGT-TGAAATTT-CGTTTGGTG-T-GTTAGCA--AAATATTTCC-TCTCCTCT-AATAG-GACTGTTTGTCACTA----AGGC--TA-AAATGGGA-TGAG-TGATAGA-GT-T-GAAGGC-AGTTTC---------ATGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGG-----------------A-------AGCAG--GT------TGG--GC-AG--------ACGTTGGAAGAA-------ACGCTATGATCACTGGGG--GAGGCTGTTAGGCAACACA-GAAGCAGGTGGGCAGACA-TTGG--GAGAAA-CAC-TATG-ATCACTG-GG-GA-ACATATTTT-TCTG-T-GA---AAGCATCAA-GCATCCTCT-GCAGTAAATTCC-ACTCAATT-------TACTGGCCTGATT-AGGATATCCAC-ACCACTTGTCCACTTGCAATGACAGG--CTTG---GTTG-AAGTTAAT------TGCAGGAT-CCAC-TC-CTG-TTCAGAGG-AGGCACTGCTG-CCACTG-AAGCTG-AGATGAGAACTTGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATTGATGAGAAATGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--TGAGAAAG-A-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AA--GCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAG--AA-A-TACACC-AT--GACTTTGAAGCATATTGGG-ATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATGAAGTTTT-GGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-ATTTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--AGGAGGC-TTGA-T-GA-ACTG-CAATT-CCT-CTGCAAGGGACATCCT--GGAGCTTGCTGTAAATGGGATTTCTCTGCATTTGGTT-AAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG--TGGAATGTAAGTGTTTTGACTGGTCTGTTTGGGAAAGT-TATGGGTGGAGGTTGAGAAGGTATTC--T--CCTCTATCT-GT-GATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCT-GTAGTTTTTGAGGC----------------GGT-AA-GTGCTGTACATCTGATTGGC--AGG-A-TACTG-TGCT-GCATGTTA--------CTTCT-GATCTGTACTA-GAGAAGGCC-T-GGTAAC----TATGTT-GGA--T--GTGT-TGTT--GCCAT-GA----TG-AAGAAA--CTTG-TCTTCCATTCT
gi|10 : TGGTCT-GGGTCCAGA-GGGTGAAG--GG----CGTTGA-TTGA-A-GG-CAA-G-TCC-CTGCAA-G-ACATCCCTGGGAGCTGGCTGTAATTTGGATTGCTCTGCATTTGGTTTGAAGAACTGGGAAGGG--GGA--GC-TTAGTGGCTGTTCTTGTATGTTCTGTGGACTGGAATGT-GGTGTTT-GGCTGCTCTGTT-GGGAAAGT-GATGGGTGGAGG-TGAGAAGGTATTC--C--TCTCTATCT-GT-GATCTGTGGGTAAAGACAGGGAAAGCTCTTGTCC--TAGATGTTGAGGC-------T-T------GGT-AACGTGCTGTACATCTGAGTGGC--AGGCATTACTGCTGCT-GCATG-TA--------CCT-T-GATCTGTACTGTTAGAAGTCTGTGGGGAAC----TCTGTTGGGA--T---TGCCAACT--GCTGTAAGGCCTTG-AAGAAA--TTTGATCTTCCATTCTccag
gi|11 : A-TGAATCCGTAAA-GT-T-GAAGGC-AGTCTC---------ACATTGAGT--T---A-TATCCAGC-CCCTGAAACACTGGAGCTGAAGCTGTAGGGTA-------GGCAG--G-------TGG--GC-AG--------ATGTCGGGAGAA-------ACACCGTAATCACTGGGG--G
gi|11 : CACTGGAGCTGAAGCTG-TAGG----GTA-G--GCAGGTGGGCAGATG-TCGG--GAGAAA-CAC-CGTA-ATCACTG-GG-GGGAGATATCGC-TTTG-AAGA---AAGCTGCAA--CATCTTCT-GCTGT-AATTTCGAATA-AGT-------CACTTTCCTGTTTGATGCTGTCCAC-ACCAC-TGTCCACTTGCAATGG-------TTG---ACTG-GAGCCAATGAAATTCACAGAAT-CCTTTTC-CTG-TTCAGAGG-AGGCACTGCTA-CTGCTA-CTGCTG-CGAGGAGAAC-TGGAGGGGGAAATGATT-TGTGATCTCTGTTGCTGTGATAAAGCAGTGATGACATTCAAGTCCGGTGTATTGGGGAGAACCGGAGCA------TGTTTGgagatatcgctttgaagaaagctgcaacatcttctgctgtaatttcgaataagtcactttcctgtttgatgctgtccacaccactgtccacttgcaatggttgactggagccaatgaaattcacagaatccttttcctgttcagaggaggcactgctactgctactgctgcgaggagaactggagggggaaatgatttgtgatctctgttgctgtgataaagcagtgatgacattcaagtccggtgtattggggagaaccggagcatgtttg
gi|12 : atgaatccgtaaagttgaaggcagtctcacattgagttatatccagcccctgaaaCTGCTGTGAGACTC--G-CTGGA--TGAGAAAGA--TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGG-AA-A-TACACCTA-TGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTG-TTG-AATG-AGTTTT--GT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-A-TTGTAGTCGTGGGTTAT
gi|13 : TAGCGACTG-TTGTCACTATCCTAG-C--TA-AAAGGGGA-TGAGTGAATAGATGTCT-GAAGGCGAGTTTCCCTCGTTTAACAT-GAGTCTG---G-A-TCTGAC-TCGTGAA-CACTG------------------A-------AGCAG--GT------GGA--GCGAG--------ACGTTGGAAGAATCAAATCGCTCTATGTTCACTGGGGT-GAGGCTG-TAGGCAACACA-GAAGCA-GT-GGCAGG-A-TCAGTTAAGAAACCACTTATG-ATCACTGAGG-GG-ACATATTTC-TC-A-T-GATCGAAGCGTCAGTGCATCTTCT-
gi|14 : TAATTGGATTACGGTT-C-C--AG-TGA--TGGACAGTGTTGTAGCTGAAATC-------------TGCTTGGGC-CT-CAACT-TGTT-------TTGCAATTCAGTC-----------CA--AG---------A----GTTGTCAGTGG--T-GTGG-TAC-AGACGTGGGGCGGGCA-CCAATTG-TTCAGTACATTG----GT------------CA-GAATATCCATCCT---------TC--C-AATCTTTCTCGTGAGGGATTTACTTTGC-TGAA-CTT-CCCCTGGTGTT-GTAA-CA--AG-CATTTCCTTCTCCTCTGAATGG-Gtgcag
gi|15 : atgAAAGTGGAATGAAATGAAAGGAAAATTAAAAAAATCCAAGAAACGACATTCAACATTTAGAATTACTTTTTATCTTACTTGTTG---ATAAATTCTTTTACA---AA-TGAGATGCAAAAATTCAGTATGAT------ACATGAGCACTGATTTGATTGTA--ATGAATTA-GAAATATGAGTATA---TACAATAATACATGGTTT--GATGCATGCAG
gi|16 : ACCCAAAAATGGAATGAAA---GAGGAA-G---AAATAACCGAAGAAGCATTATGTTATACTTAGAATTAGTTTT-ATCTTGCTCTTTG---GTAAGTTCTATTATATTAAA-TGGTATGCAGTAAATAAGTATGATAATGATATATGATCAATGATTTCAATATATGATAAAAT-AGTAAT-TGAGTAatagaaca
gi|17 : aaaacGTTCTCTAAT-ATT--C-TTTCTT-CTCTTGAGGATAT-ACTCT-C-TGCC-TTC-CACC-GGTG-TTGTT--CATTGA-TATTTCC-TCTCCTCT-AATAG-GA-TG-TAGTCACCA----AGGCTGTA-AATTGAGATTTAGTTGAT
gi|18 : ttagtccaggcccatgaaaagttgttctgtttcttgattccggaGAAAGC-GGTGGCTGGAGG-GGAGAAGATATTC--TGTCCTC---CT-GT-TATCTGTGGATAA--GCTGGGAAA-CTC-TGGCC-GTAG-TGCTGGGGCTGAA-CTT-TTG----GGT-AA-GTGCTGTACATCTGAGTGGC--tca
gi|19 : GGAGCAAGAGATTGTTTGCTGTAAGACCC--A-ATGGAAACAAGGGAGAACTGTCGAA--G----GAATGGATCCTGAG-GATGGTACTCGCATGTGG-GT--GAG-TCCAGTATT--ATTG
gi|2 : AAGTGGAATTTAA---GGGGAAA-----AATAACCAAAGAAGAATTATCCTATACTTAAAATTAGTTTT-ATCTTGCTCATTG---ATAAGTTCTA--ACTTT-AA-TGATGTGCAGGAAATAAGTATGA------TATATGACCAATGATTTCATTATG--AT-AAATAAGGAATATGAGTATAAGGTACAACGATGCATGGTTTTGGATG---GCAGTCAAACAAGAAAATTACCA-ACCAACAA-GTTCAATG-TCA-CTTAAAT--TCTCCTCTTCCAACATGTTGAGACATTCTAAGGGCATCATCTAGTCT--------GCCTT--CCTCTTT-GACATCCTTG-AGAACTCTCTGCCTTTT-AGAGGACCTATTCCACATGCTAGGCTGTAACT--CTGGGGACAACTTTTGG--TAAAGATAA-TTCGGGA-TTATGTT-CTTCGTGG---TG--TTGGCACCGACTTCATCTTATTTGCACAAGCCAGC-C---G---CTCACCTGCTTCCAG--TGGTCAAACC-GTCTTC--ATGCGCC-----AA-CTCTTTTTTCTGCTCTTC-------AGTAGGG-TATGG-G-TTTTCGCAAGATTTGC-TTTG-----G---TACCA-ACTT-GCTTTAGGAAATAT-ACAACAT-TTGGGAGGCCATGGGCTGGAAAAGGCA-GAACGTATCCTTATTAATGGTCTT-C----AATTTAATTGGATGCTGGTTTCGC--TG-TGACTTGGACAGGGT-A---TTGAAA-CACCG-CACTCTTTTG-TTGGCCAAT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCTCCACCAGCTCGTGCCTACTTCGGTGTCGGTGGGATAATGGGTACTGGGTGTGGCTCTGGTATCCAATTG-TT-AGTACATTG----GT----CTCAT-C---------------CTCTCT--T------------TTTCTC-TGA-GGTATTGCTTGGT-TGGA-TGT-CCTCTGGTG------------------------------T-AATAG-GACTG--AGTCACTG----TGGC--TATAAATGGGG-TGAATTGATAAA-GT-TGGAAGGC-AATTTC---------ATGTTGAGC--GTAAGTAATCGAACATGGTGAAGCACTGG-----------------GGCTGGATAGCTGTAGTGCAACATAGAAGC-AGGTGGGCAGACTTTGGGAGAA-------ACACTATGATCACTGGGG--AAAGCTG-TAGGCAACACACGAAGCAGGTGGGCAGGCACTTGG--GAGAAA-CAC-TATGAATCACTG-GGAGG-AAATATTTCAACTG--------AAGCAAC-A-GCATCTTTTCGCGGT-AATTCCAACTC-ATTCTTCCCCCACTGGCCTGTTTGAAGGAGTCCACAACCAC-TGTCCACTTGCAATGAC-GGACCTAG---GTCGTGTCTTAAT------CGCAGAATGCCACTTCACTGTTTCAGAGGAAGGCACTGCTGCCCACTGAAAGGTGAAGATGAGAA--TGGTGGGAGAAATGGTTGGGTGATTTCTGTTTC-------AA-----------------GTCAGGTGTATCAGTGAGAAAC--AGCAG-----CATCTG--GT--GACTTGAG-CTTGA--C--CGAAG-A-TGTCAGA--GGAGAAAGTGGAATCAGAGCGAAGATGC-----TATGGAGT--G-GCTCCA-TATT--GTTGAAGGGCA----AGAGGTTGGTTATATAA-CC-------TGAG--GAAAAC--------ATGA--TTGA---------------TGCA-GCAAGA-TACATCT-TTGGATGTTGAAG-ATATT-GGAATTGTAGA-GAGAAAGGCCCAGGAATTTGGCAAGATTCTGAGAGCAGGCTCTGT-GTTGGG-TTGTG-TGTTGG-GATG-ACTTTT-GTG--GGATCTGG-AATTT-TGCTGGGAAGCAGACCGCTGTTGTATCCAATTGTTAA-TTGTTATCATGGGTCACAGTCTGGGAT---CAGGGGTGGAAGTGGAAGGC-TTGATT-GA-A-GGCCAA-TGTCT-CTGC
gi|20 : agaacacctTGGAGCACTGG-----------------GGC-----AGCAGCTGTGGGG--TAG--GC-AG--------ACGTTGGGAGAA-------ACctgggtaagggg
gi|3 : tgaattaggactaaccatctgtTGCTGTGAGACTT--GGCTGAA--CAAGGCGGAA-TGTCTGAAGG----AATCGGATCCTGAG-GACGG-AC-----TATGG-GTGGG-G-TCCA-TATTGGGTTGAGA---AGCAGAGAGGCTGGTTATATGATCCATATGGTTGAGCAG-AGGCTGGTTATTATGAGTCTGAGGAAACATGATTTGATGCATGCAA-ATTACACCT-TTGGACTTTGAAGCATATTGGGCATAGTAGATGAG-AAGGCCC-GGAATATGGC-AGATTCTGAGACT-GGCTCTGTAGTTGGGTTTGGGTTGCTGGTACTG-ACTTTTAGATTGGGGTCTGGAAATAACTGCTAGGAAA-GAG-CAATGCCGTATCC-ATTATC---TTCCA-------GTTA----CT-GGAT---------TGGA------------TG--T-GACA-GG-CAT-TACCTACCGCAA-GGACATTCT--GGAGCTGGCTGAAAATGGGATTCCTCTGCATTTGGTTGGAAGAACTGG-GTGGATTGACAGGCTTTCATGGTTGTT-TTGT-TGTGCT-TGG-CTGG-ATGT-GGTG-TTTGACTGG-CTGTTTGGAAAAGCGGGTGGCTGGAGG-GGAGAAGAT-TTCTGT--CCTGCACTT-GTATATCTGTGGATAA--TCTGGGAAACCTC-TGGCCAGTAGTCGCTGGGGCTGAA-CTTATTTTAGGGGTAAA-GTGCTGTAACTCTGAGTGGCAAAGC-A-TACTGCTGCTAGC-TG-TACACAAAAGCATCTGGATATGTTCTG-TAGAAACCT-GGGGTAACACTATCTGTT-GGA--T--G-GTCTGTTGAGGCGAAGG----TGTAAGAAAGTGTTG-TATTCC
gi|4 : tTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTC-----G---TACCA-A--T-GATTTAG--AATATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACATTTCCCTCTTCAT--TCTCTT---AAACTTAATTGGATGCTGGTTTC-C--AG-AGA--TAGACAGGGT-G---TTGAAA-CACCG-CACCCTTTTG-TTGGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGCAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAGTTG-TTAAGTACATTG----GTGAAGTCCATGCACATGAA-ATTCTTGCTTTCT--TCATCCTC-TATCTTTCTCTTAAGGGGATTGCTTTGT-TGAA-TTT-CGTTTGGTG-T-GTTAGCA--AA-TATTTCC-TCTCCTCT-AATAG-GACTG-TTGTCACTA----AGGC--TA-AAATGGGA-TGAGTTGATAGA-GT-T-GAAGGC-AGTTTC---------ATGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACT-G-----------------A-------AGCAG--G-------TGG--GC-AG--------ACGTTGGAAGAA-------ACGCTATGATCACTGGGG--GAGGCTG-TAGGCAACACA-GAAGCAGGTGGGC---CA-TTGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TCTGAT-GA---AAGCAC--A-GCATCTTCT-GCAGT-AATTCC-ACTC-ATT-------TACTGGCCTGATTGAGGATATCCAC-ACCAC-TGTCCACTTGCAATGAC-AG--CTTGTTAGTTG-AAGTTAAT------TGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCACTG-AAGCTG-AGATGAGAAC-TGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATTGATGAGAAATGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--TGAGAAAG-A-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGG-AA-A-TACACCTA-TGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTG-TTG-AATG-AGTTTT--GT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-A-TTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAA--GGAAGGC-TTGATT-GA-C-TG-CAA-T-CCT-CTGCcatgcattcatcagagaaggtgcctgccacaactgaagaacaaggagcttagacaagtgcaataccaatatttgatgtgtatgaagaagtttgttgtctcagaattctgagcacccaataatttcccataggaaaggatgctttcggtggtaaggttatgatataaaagaaggagcacttgactgagactcagtacataagtttataagcgcgctggtggtgggcatgctccaacattctgagactaactcagcatggccaaacttcctcgcatccacgctcttccccatcacgtagtgccagtaattttgcaatccatcgacagaacccagggtttactttgtgttttctaaaaaattagtcaggaaataatcacttcagaactagcactacacactatgataaacacacaatcggataataactttataagtggaaagagtgggaattaggtcactgtaattgtgtaatgattagtctttaatttggagtatgggacagcgagcaaaggt
gi|5 : AGTCT-GGAT---GA-GGGTGGAA--GGAAGGC-TTGA-TTGA-C-TG-CAA-T-CCT-CTGCAA-GGACATCCT--GGAGCTTGCTGTAAATGGGATTTCTCTGCATTTGGTT-AAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG-CTGGAATGT-AGTG-TTTGACTGGTCTG-TTGGGAAAGT-TATGGGTGGAGG-TGAGAAGGTATTC--T---CTCTATCT-GT-GATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCT-GTAGTT-TTGAGGC-G--------------GGT-AA-GTGCTGTACATCTGATTGGC--AGG-A-TACTGTTGCT-GCATG-TA--------CTTCT-GATCTGTACTA-GAGAAGGCC-T-GGTAAC----TATGTT-GGA--T--GTGTCTGTT--GCCAT-GA----TG-AAGAAA--CTTG-TCTTCCATTCT
gi|6 : AGTCT-GGAT---CA-GGGTGGAG--GGAAGGC-----------------AA-T-CCT-CTTCAA-GGACATCCT--GG------TTGTAAATGAAATTTCTCTGCATTTGGTT-GAATAACTGG-AAAAA--AGAAGGC-TTCATATTAGTT-TTGC-TGTTCTGTTG-CTGGAATGT-GGTG-CTTGACTTGTCTG-TTGTGAAAGT-GATGGCAGGAGA-TGAGAAGATATTC--T---CTCTATTTGGT-TACCTGTGGACAA--GCAGAGAGC-CTC-TGTCC-GTA---------GC-GAATCTC-TA-----GGT-AA-GTTCTGTACATC-----------AG-A-TGCTGATGCT-TCGTG-TA--------CTTCT-TATGTATTCTG-TAGAATTCC-C-TGTAAC----TCTGGG-GGAGGTAGGTGTCTGTT--GCCAC-GG----TG-AAgaagagcctgtacagtcgaacaacgagcttaagtctccaatatttgatttatgaagaatttttggagtctcaattcagcataaatgatgattttcaatgaaggatgctttgaattctgatttgatgatagcttgtacatggagctggcttcagtccagtatatatagctggtggtggacatgttctctattacctgagactctcgacttcatgccaacctcctcctcactcctctccatgccagccattgcaatccatcctcgacattgttttccttgtgcagtatatcaatatacatccagaaaaattgaattcatagtaatttctgacaattacacttatcaaattatgtttacagtgcagttcagctttaacagtgggaatgggacacctgtaattgggtaataatgattagattaattggataatggaggagcccaggtgt
gi|7 : AATTA-CA-A--AACAAGGCTTCATGTTCACCTT-AGTGCTTTCCTCATCCAACGTA-TGA-ACATTC-AAGGACAATGT--GGTTTCTTACGTGGCT-TCACTTCTTTGGATATCCATGTAGA--CCTCTGCTTTTCAAGA-G-CCACTTACACATGCT-GGCT-TA--CTGCTTTGG--AAC-TTTGGATTAAACGTAATTTC-GGACTT-TGTT-CTTC-TGTTTATGTCTTTTCA-CGA---CACC---TTTGCTC--GC--GC-CCAGACGTCTCACCTG--TTCAGTTTGG-CAGGCCGGT-TTCTAAT-T-CCTTCATATGCTCAT-CTTCTGTGATTCCTCGCTTTGTGGGGATGGAGTG-TTGTC---AG--TGGGATCTGCACCAGCTTTACCACA--TAGATTTAGCAAGTATC-CGAGAC-TT-TG-GGCCAT-GGCTGGAGA--GCACG-ACATTGTCCTCTCATTG--CTC-CGTTAAACTTAAGTTGATGCTGGTTTC-CCAAGCAGA--TAGA-AGGGT-G---TTGAAA-CACCGCCGCCTTTTTGTTTTG-C-ATGCCACTCTGTTCAC-TGTTTGC-GGTCAGTCTTGACAGCCacattccttgaagctgaggcctgttacagtatcactattgtttatgattacagaggtaaagtgaacaaacactcagcatcaggaattttgtacgtcctctaccatcgataggcttttgatgacttacttgggactaagctcactcagagagcaggatgagcaccagtcgaacagtatatatagcgtgtgttggtacaactctctattacctgagactctcaacttcatcctttgtccttctcatactccacccattagtgccagtaaatctgacacaatacctccacaagatgtcttctttagtgtattatgagcaaaattattagtcaatattataacttcaaacattaattacaacttatgtgcaggaatttgtttatataagatggccccatgttcagctttatagagtgacccgcggcaatcaaacacctcgttaagctacatgcgtgtagattaattgggatggagccaaggaattgg
gi|9 : CTATTGTTC-------TGTGAGG-TAGGG-G-TTGTC-CAGA--TGAG-TTTG-----G---TATCA-C--T-GATTTAG--AACATCG-GCGACATT-GGAGGCCATGGGCTGGAAA--GCA-G-ACGTATCCTTCTTAATGGTCTT-C---AA-TTTAATTGGATGCTGGTTTC-C--AG-TGA--TTGACAAAG--GTA-TTGAAACACCCG-CACC-TTTTGTT-GGCC-AT-C-ACT-TCTTCACTTGTTTGCGGGTCAGTCCTGATAGTCT-CACCAGCTCGT--CTACTTCGCCGCCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTGTTTAAGTACATTG----GT----TTCAT-C---------------CTCTCT---------------TTTCTCTTTGAGATATTGCTTTGTATGAA-TGTATGTCTGGTG------------------------------T-AATAG-GACTG-TTGTTGCT-----AGGC--T-------------AGTTGGTAGA-TT-T-GAATGC-AATTTC---------Agt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TATACAGTGGAACAAAGTGCTGAAGAAGGTCTCCAATGTTTGATGATGAAGGCTTCAGTTCACTATGCAGCAATTCTGGAAATGTCTTTGAATTCTTGTTGAGTGATAGTTATGGTAATGGGACAGAGCCATCCAGGACAGTATATATAGCTGGTGGTGGACATGTTCTCTATTACCTGAGACTCCTGTCATGCCAACCTCCTCCTCACTTCTCTCCATAGAGCCAGCAATGGCAGTTCCTAAGATTGTTTTGGTTGTGCAGTGTATCCAGTATGCATCCAGCTAAATTAAATTCCTAGTAATTTGTTACCATGACACTATCAAAACATGTATAGAGCAGGCCAGCTTGTACAGTTAGACTTCCATACCTATAATTGGGTAATGATTAGAGCCTGTTGACAATTGAGGAGCCCAGGTGAGA
Unaligned ( gi|21 ): GTGGGAATTAGGCACCTGTAATTGTGTAATGATTAGTTTAATTGGATAATGGAGGAGCAAAGGT
Alignments
lowQualScore : 111 22222 1 111 111 1 3333333 11 222 11 3333 1 1 1 2222 11 11 22 1 22 5555555555 222222 11 1 1 1 1 1 333333 222 1 111 1 1 1 1 1 222 11 1 222 222 4444444444444444444 11 11 1 11 111 22222 2222222 11 222222222 1111 2 11 22 111111 3333 1 11 1111 999999999999999999999999999999999999999999999 5555555555555555 11111 222222222 22222222 8888888888888888888888888888888888888888 22222222 2222222 11 11 22222222 1 1 1 3333333 1 1 222222 111 1 222222 1 1 1 1 1 1 1 11 1 333333 1111 222 1111 11111 22222222 2222222 11 22222222 555555555555555 222 2222 1 222222 111 111111 111 2222222222 111 11 1 11 2 1 222222 1 111 8888888888888888 22222222 222 1111 1111111 11 2222222 111 1
lowQualScore : 777 77777 0 1 0 1 777 3 000 0 1 1111111 0 33 7 66 1 3 333 6 0 88 0000 5 5 7 3 2222 33 7 33 7 1 55 7 7 6 3 00 1111111111 444444 33 3 7 2 3 3 7 1 3 6 999999 555 3 333 1 3 3 3 3 3 6 333 88 3 333 555 4444444444444444444 88 88 7 6 2 33 444 55555 2 6 6666666 8 8 8 8 11 8 444444444 4444 8 8 8 3 3 8 88 0 0 11 8 8 1 0 00 999999 0 6 99 77 99 0 6 3333 7 3 6 5 9 2 6 6 2 6 3 1 2 1 8 11 66 5 8 0 8 8 5 7777 333333333333333333333333333333333333333333333 3 1 1 6 6 6 1 9999999999999999 6 6 5 6 55555 99 6 5 6 6 6 6 666666666 6 11111111 0 8 1 1111111111111111111111111111111111111111 99 6 44444444 1111111 1 55 8 8 0 0 44 8 11 8 8 8 8 8 8 8 0 66666666 88888 8 4 0 9 0 2222222 1 2 0 0 0 0 222222 777 0 888888 0 3 0 0 0 0 2 0 0 22 0 3 0 2 2 2 0 2 111111 1 99 6 0000 111 99 4444 6 66666 6 99 6 6 6 99 22222222 0 0 6666666 11 8 99999999 88 000000000000000 000 8 8 2222 5 0 8 8 8 8 1 0 0 8 0 3 0 8 8 333333 8 8 8 8 666 3 1 5 444444 111 3 77 2222222222 5 111 5 8 11 0 3 6 8 11 0 8 0 8 8 8 0 8 0 0 0 0 0 77 1 6 111111 1 6 77 99 3 6 6 111 4444444444444444 6 6 2 99 8 8 8 8 3 8 99999999 8 1 88 1 666 7777 8 3333333 11 7777777 8 444 0
lowQualScore : ... ..... . . . . ... . ... . . ....... . .. . .. . . ... . . .. .... . . . . .... .. . .. . . .. . . . . .. .......... ...... .. . . . . . . . . . ...... ... . ... . . . . . . . ... .. . ... ... ................... .. .. . . . .. ... ..... . . ....... . . . . .. . ......... .... . . . . . . .. . . .. . . . . .. ...... . . .. .. .. . . .... . . . . . . . . . . . . . . . .. .. . . . . . . .... ............................................. . . . . . . . ................ . . . . ..... .. . . . . . . ......... . ........ . . . ........................................ .. . ........ ....... . .. . . . . .. . .. . . . . . . . . ........ ..... . . . . . ....... . . . . . . ...... ... . ...... . . . . . . . . . .. . . . . . . . . ...... . .. . .... ... .. .... . ..... . .. . . . .. ........ . . ....... .. . ........ .. ............... ... . . .... . . . . . . . . . . . . . . . ...... . . . . ... . . . ...... ... . .. .......... . ... . . .. . . . . .. . . . . . . . . . . . . . .. . . ...... . . .. .. . . . ... ................ . . . .. . . . . . . ........ . . .. . ... .... . ....... .. ....... . ... .
lowQualScore : 555 22222 2 0 0 0 555 2 222 0 0 5555555 8 88 0 55 0 2 333 7 7 33 0000 5 5 3 3 7777 33 3 33 3 0 33 3 3 7 3 00 3333333333 777777 33 3 3 0 3 3 3 0 3 7 333333 000 3 777 0 3 3 3 3 3 7 333 33 3 333 777 7777777777777777777 33 33 3 7 0 88 000 00000 5 5 0000000 0 0 0 0 00 0 000000000 8888 0 0 0 4 8 0 66 8 8 00 0 0 4 6 00 222222 8 7 22 77 22 3 7 0000 7 2 7 2 8 5 7 7 5 7 2 0 5 0 0 00 22 0 0 8 0 0 6 0000 333333333333333333333333333333333333333333333 2 0 0 7 7 7 0 5555555555555555 7 7 7 7 88888 22 7 7 7 7 7 7 777777777 4 22222222 8 0 0 3333333333333333333333333333333333333333 22 7 22222222 7777777 4 88 0 0 8 8 66 0 00 0 0 0 0 0 0 0 8 88888888 66666 0 2 0 0 0 5555555 0 5 2 8 0 0 888888 555 0 888888 0 2 0 0 0 0 0 0 0 55 0 2 2 5 5 5 2 0 000000 0 22 7 8888 333 22 2222 7 77777 7 22 7 7 7 22 00000000 8 8 0000000 00 0 00000000 88 000000000000000 000 0 0 8888 6 6 0 0 0 0 4 8 8 0 8 6 6 0 0 000000 0 0 0 0 888 2 7 7 444444 999 6 11 4444444444 7 666 7 0 00 8 8 0 0 00 8 0 6 0 0 0 8 0 4 8 8 6 8 33 0 7 222222 7 7 77 22 3 7 7 777 5555555555555555 7 7 5 22 0 0 2 0 8 0 00000000 0 4 66 0 888 0000 0 8888888 00 0000000 0 000 0
consensus : ACCCAAAAGTGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATNCTATACTTAGAATTAGTTTT-ATCTTGCTCNTTG---ATAAGTTCTATTACATT-AA-TGGTATGCAGNAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGNAATATGAGTATA---TACAACGATGCATGGTTT--GATG---GCAGTCAAACAAGAAAATTA-CA-A--AACAAGGCTCAATGTTCACCTTAANTG-TCTCCTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGTCT--------GCC-T--CCTCTTTGGACATCCTTG-AGAACTCTCTGCCTTTT-AGA-GACCANTTCCACATGCT-GGCTGTA--C--CTGGGG--AAC-TTTGGATTAAANGTAA-TTC-GGA-TT-TGTT-CTTCGTGT---TG--TTTTCA-CGA---CACCT--TTTGC-C--GCCAGC-C---GCGCCTCACCTG--TTCAG--TGGTCAGGCCGGTCTTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTG-----G---TACCA-A--T-GATTTA-G-AA-TATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACGTTTCCCTCTTAATGGTCTC-C---AAACTTAATTGGATGCTGGTTTC-C--AG-NGA--TAGACAGGGT-GT--TTGAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTG-TTAAGTACATTG----GT----TCCATGCACATGAA-ATTCTTGCTCTCT--T-ATC--C-TATCTTTCTCTTGAGGGNATTGCTTTGT-TGAA-TTT-CGTCTGGTG-T-GTTA-CA--AA-TATTTCC-TCTCCTCT-AATAG-GACTG-TTGTCACTA----AGGC--TA-AAATGGGA-TGAGTTGATAGA-GT-T-GAAGGC-AGTTTC---------ACGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGG-----------------A-------AGCAG--GT------TGG--GC-AG--------ACGTTGGGAGAA-------ACGCTATGATCACTGGGG--GAGGCTG-TAGGCAACACA-GAAGCAGGTGGGCAGGCA-TCGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TCTG-T-GA---AAGCANCAA-GCATCTTCT-GCGGT-AATTCCGACTC-ATT-------CACTGGCCTGNTTGAGGATGTCCAC-ACCAC-TGTCCACTTGCAATGAC-GG--CTTG---GTTG-GAGTTAAT------CGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCGCTG-AAGCTG-AGATGAGAAC-TGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATCGGTGAGAAACGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--CGAGGAAGAA-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGGCAA-A-TACACCTATTGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATG-AGTTTT-GGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-A-TTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--GGAAGGC-TTGA-T-GA-A-NG-CAA-T-CCT-CTGCAA-GGACATCCT--GGAGCTNGCTGTAAATGGGATTTCTCTGCATTTGGTT-GAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG-CTGGAATGT-GGTGTTTTGACTGGTCTGTTTGGGAAAGC-GATGGNTGGAGG-TGAGAAGGTATTC--T--CCTCTATCT-GT-NATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCC-GTAGTTGTTGAGGC-GAA-CTT-T------GGT-AA-GTGCTGTACATCTGAGTGGC--AGG-A-TACTGCTGCT-GCATG-TA--------CTTCT-GATCTGTACTG-TAGAAGNCC-TGGGTAAC----TCTGTT-GGA--T--GTGTCTGTT--GCCGTAGG----TG-AAGAAA--CTTG-TCTTCCATTCT
Reference ( family-6572 ) : ACCCAAAAGTGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATNCTATACTTAGAATTAGTTTT-ATCTTGCTCNTTG---ATAAGTTCTATTACATT-AA-TGGTATGCAGNAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGNAATATGAGTATA---TACAACGATGCATGGTTT--GATG---GCAGTCAAACAAGAAAATTA-CA-A--AACAAGGCTCAATGTTCACCTTAANTG-TCTCCTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGTCT--------GCC-T--CCTCTTTGGACATCCTTG-AGAACTCTCTGCCTTTT-AGA-GACCANTTCCACATGCT-GGCTGTA--C--CTGGGG--AAC-TTTGGATTAAANGTAA-TTC-GGA-TT-TGTT-CTTCGTGT---TG--TTTTCA-CGA---CACCT--TTTGC-C--GCCAGC-C---GCGCCTCACCTG--TTCAG--TGGTCAGGCCGGTCTTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTG-----G---TACCA-A--T-GATTTA-G-AAATATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACGTTTCCCTCTTAATGGTCTC-C---AAACTTAATTGGATGCTGGTTTC-C--AG-NGA--TAGACAGGGT-GT--TTGAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTG-TTAAGTACATTG----GT----TCCATGCACATGAA-ATTCTTGCTCTCT--T-ATC--C-TATCTTTCTCTTGAGGGNATTGCTTTGT-TGAA-TTT-CGTCTGGTG-T-GTTA-CA--AA-TATTTCC-TCTCCTCT-AATAG-GACTG-TTGTCACTA----AGGC--TA-AAATGGGA-TGAGTTGATAGA-GT-T-GAAGGC-AGTTTC---------ACGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGG-----------------A-------AGCAG--GT------TGG--GC-AG--------ACGTTGGGAGAA-------ACGCTATGATCACTGGGG--GAGGCTG-TAGGCAACACA-GAAGCAGGTGGGCAGGCA-TCGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TCTG-T-GA---AAGCANCAA-GCATCTTCT-GCGGT-AATTCCGACTC-ATT-------CACTGGCCTGNTTGAGGATGTCCAC-ACCAC-TGTCCACTTGCAATGAC-GG--CTTG---GTTG-GAGTTAAT------CGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCGCTG-AAGCTG-AGATGAGAAC-TGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATCGGTGAGAAACGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--CGAGGAAGAA-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGGCAA-A-TACACCTATTGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATG-AGTTTT-GGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-A-TTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--GGAAGGC-TTGA-T-GA-A-NG-CAA-T-CCT-CTGCAA-GGACATCCT--GGAGCTNGCTGTAAATGGGATTTCTCTGCATTTGGTT-GAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG-CTGGAATGT-GGTGTTTTGACTGGTCTGTTTGGGAAAGC-GATGGNTGGAGG-TGAGAAGGTATTC--T--CCTCTATCT-GT-NATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCC-GTAGTTGTTGAGGC-GAA-CTT-T------GGT-AA-GTGCTGTACATCTGAGTGGC--AGG-A-TACTGCTGCT-GCATG-TA--------CTTCT-GATCTGTACTG-TAGAAGNCC-TGGGTAAC----TCTGTT-GGA--T--GTGTCTGTT--GCCGTAGG----TG-AAGAAA--CTTG-TCTTCCATTCT
gi|1 : ACCCAAAAATGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATGTTATACTTAGAATTAGTTTT-ATCTTGCTCTTTGGTAATAAGTTCTATTATATT-AAATGGTATGACGTAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGTAATATGAGTATA---TA--ATGATGCATGGTTT--GATG----CAGTCAA-CA-GAAAA--A-CACA--AACAAG-CTCAATGTTCAC-TTAATTA-TC--CTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGT-T--------GCC-T--C-TCTTTG-ACATCCTTG-AGAACTCTCTGC-TTTT-AGA-GACCATTTCCACATGCT-GGCTGT---C--CTGGG---AAC-TTTGGAT--AAAGTAA-TTC-GGA-TT-TGTTTCTTCGTGT---TG--TTTTCA-CGA---CACCT--TTTGC-C--GCCAGCACA--GCGCTTCACCTG--TTCAG--TGGTCAGGCCGGTTTTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-GGTTGTC-CAGG--TGGG-TCTC-----G---TACCA-A--T-GATTTA-G-AA-TATCACGAGAC-TT-TGAGGCC-TGGCTTGGAGA--GCA-G-ACATTTCCCTCTTCAT--TCTC-T---ATACTTAATTGGATGCTGGTTTC-C--AG-AGA--TAGACAGGGT-GT----GAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGG-TCAGTCCTGACAGCCT-CACCAGCTCGT--CTAC--CGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAGTTG-TTAAGTACATTGTGAAGT----TCCATGCACATGAA-ATTCTTGCTTTCT--TCATC--CCTATCTTTCTCTTAAGGGGATTGCTTTGT-TGAAATTT-CGTTTGGTG-T-GTTAGCA--AAATATTTCC-TCTCCTCT-AATAG-GACTGTTTGTCACTA----AGGC--TA-AAATGGGA-TGAG-TGATAGA-GT-T-GAAGGC-AGTTTC---------ATGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGG-----------------A-------AGCAG--GT------TGG--GC-AG--------ACGTTGGAAGAA-------ACGCTATGATCACTGGGG--GAGGCTGTTAGGCAACACA-GAAGCAGGTGGGCAGACA-TTGG--GAGAAA-CAC-TATG-ATCACTG-GG-GA-ACATATTTT-TCTG-T-GA---AAGCATCAA-GCATCCTCT-GCAGTAAATTCC-ACTCAATT-------TACTGGCCTGATT-AGGATATCCAC-ACCACTTGTCCACTTGCAATGACAGG--CTTG---GTTG-AAGTTAAT------TGCAGGAT-CCAC-TC-CTG-TTCAGAGG-AGGCACTGCTG-CCACTG-AAGCTG-AGATGAGAACTTGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATTGATGAGAAATGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--TGAGAAAG-A-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AA--GCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAG--AA-A-TACACC-AT--GACTTTGAAGCATATTGGG-ATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATGAAGTTTT-GGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-ATTTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--AGGAGGC-TTGA-T-GA-ACTG-CAATT-CCT-CTGCAAGGGACATCCT--GGAGCTTGCTGTAAATGGGATTTCTCTGCATTTGGTT-AAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG--TGGAATGTAAGTGTTTTGACTGGTCTGTTTGGGAAAGT-TATGGGTGGAGGTTGAGAAGGTATTC--T--CCTCTATCT-GT-GATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCT-GTAGTTTTTGAGGC----------------GGT-AA-GTGCTGTACATCTGATTGGC--AGG-A-TACTG-TGCT-GCATGTTA--------CTTCT-GATCTGTACTA-GAGAAGGCC-T-GGTAAC----TATGTT-GGA--T--GTGT-TGTT--GCCAT-GA----TG-AAGAAA--CTTG-TCTTCCATTCT
gi|10 : TGGTCT-GGGTCCAGA-GGGTGAAG--GG----CGTTGA-TTGA-A-GG-CAA-G-TCC-CTGCAA-G-ACATCCCTGGGAGCTGGCTGTAATTTGGATTGCTCTGCATTTGGTTTGAAGAACTGGGAAGGG--GGA--GC-TTAGTGGCTGTTCTTGTATGTTCTGTGGACTGGAATGT-GGTGTTT-GGCTGCTCTGTT-GGGAAAGT-GATGGGTGGAGG-TGAGAAGGTATTC--C--TCTCTATCT-GT-GATCTGTGGGTAAAGACAGGGAAAGCTCTTGTCC--TAGATGTTGAGGC-------T-T------GGT-AACGTGCTGTACATCTGAGTGGC--AGGCATTACTGCTGCT-GCATG-TA--------CCT-T-GATCTGTACTGTTAGAAGTCTGTGGGGAAC----TCTGTTGGGA--T---TGCCAACT--GCTGTAAGGCCTTG-AAGAAA--TTTGATCTTCCATTCTccag
gi|11 : A-TGAATCCGTAAA-GT-T-GAAGGC-AGTCTC---------ACATTGAGT--T---A-TATCCAGC-CCCTGAAACACTGGAGCTGAAGCTGTAGGGTA-------GGCAG--G-------TGG--GC-AG--------ATGTCGGGAGAA-------ACACCGTAATCACTGGGG--G
gi|11 : CACTGGAGCTGAAGCTG-TAGG----GTA-G--GCAGGTGGGCAGATG-TCGG--GAGAAA-CAC-CGTA-ATCACTG-GG-GGGAGATATCGC-TTTG-AAGA---AAGCTGCAA--CATCTTCT-GCTGT-AATTTCGAATA-AGT-------CACTTTCCTGTTTGATGCTGTCCAC-ACCAC-TGTCCACTTGCAATGG-------TTG---ACTG-GAGCCAATGAAATTCACAGAAT-CCTTTTC-CTG-TTCAGAGG-AGGCACTGCTA-CTGCTA-CTGCTG-CGAGGAGAAC-TGGAGGGGGAAATGATT-TGTGATCTCTGTTGCTGTGATAAAGCAGTGATGACATTCAAGTCCGGTGTATTGGGGAGAACCGGAGCA------TGTTTGgagatatcgctttgaagaaagctgcaacatcttctgctgtaatttcgaataagtcactttcctgtttgatgctgtccacaccactgtccacttgcaatggttgactggagccaatgaaattcacagaatccttttcctgttcagaggaggcactgctactgctactgctgcgaggagaactggagggggaaatgatttgtgatctctgttgctgtgataaagcagtgatgacattcaagtccggtgtattggggagaaccggagcatgtttg
gi|12 : atgaatccgtaaagttgaaggcagtctcacattgagttatatccagcccctgaaaCTGCTGTGAGACTC--G-CTGGA--TGAGAAAGA--TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGG-AA-A-TACACCTA-TGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTG-TTG-AATG-AGTTTT--GT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-A-TTGTAGTCGTGGGTTAT
gi|13 : TAGCGACTG-TTGTCACTATCCTAG-C--TA-AAAGGGGA-TGAGTGAATAGATGTCT-GAAGGCGAGTTTCCCTCGTTTAACAT-GAGTCTG---G-A-TCTGAC-TCGTGAA-CACTG------------------A-------AGCAG--GT------GGA--GCGAG--------ACGTTGGAAGAATCAAATCGCTCTATGTTCACTGGGGT-GAGGCTG-TAGGCAACACA-GAAGCA-GT-GGCAGG-A-TCAGTTAAGAAACCACTTATG-ATCACTGAGG-GG-ACATATTTC-TC-A-T-GATCGAAGCGTCAGTGCATCTTCT-
gi|14 : TAATTGGATTACGGTT-C-C--AG-TGA--TGGACAGTGTTGTAGCTGAAATC-------------TGCTTGGGC-CT-CAACT-TGTT-------TTGCAATTCAGTC-----------CA--AG---------A----GTTGTCAGTGG--T-GTGG-TAC-AGACGTGGGGCGGGCA-CCAATTG-TTCAGTACATTG----GT------------CA-GAATATCCATCCT---------TC--C-AATCTTTCTCGTGAGGGATTTACTTTGC-TGAA-CTT-CCCCTGGTGTT-GTAA-CA--AG-CATTTCCTTCTCCTCTGAATGG-Gtgcag
gi|15 : atgAAAGTGGAATGAAATGAAAGGAAAATTAAAAAAATCCAAGAAACGACATTCAACATTTAGAATTACTTTTTATCTTACTTGTTG---ATAAATTCTTTTACA---AA-TGAGATGCAAAAATTCAGTATGAT------ACATGAGCACTGATTTGATTGTA--ATGAATTA-GAAATATGAGTATA---TACAATAATACATGGTTT--GATGCATGCAG
gi|16 : ACCCAAAAATGGAATGAAA---GAGGAA-G---AAATAACCGAAGAAGCATTATGTTATACTTAGAATTAGTTTT-ATCTTGCTCTTTG---GTAAGTTCTATTATATTAAA-TGGTATGCAGTAAATAAGTATGATAATGATATATGATCAATGATTTCAATATATGATAAAAT-AGTAAT-TGAGTAatagaaca
gi|17 : aaaacGTTCTCTAAT-ATT--C-TTTCTT-CTCTTGAGGATAT-ACTCT-C-TGCC-TTC-CACC-GGTG-TTGTT--CATTGA-TATTTCC-TCTCCTCT-AATAG-GA-TG-TAGTCACCA----AGGCTGTA-AATTGAGATTTAGTTGAT
gi|18 : ttagtccaggcccatgaaaagttgttctgtttcttgattccggaGAAAGC-GGTGGCTGGAGG-GGAGAAGATATTC--TGTCCTC---CT-GT-TATCTGTGGATAA--GCTGGGAAA-CTC-TGGCC-GTAG-TGCTGGGGCTGAA-CTT-TTG----GGT-AA-GTGCTGTACATCTGAGTGGC--tca
gi|19 : GGAGCAAGAGATTGTTTGCTGTAAGACCC--A-ATGGAAACAAGGGAGAACTGTCGAA--G----GAATGGATCCTGAG-GATGGTACTCGCATGTGG-GT--GAG-TCCAGTATT--ATTG
gi|2 : AAGTGGAATTTAA---GGGGAAA-----AATAACCAAAGAAGAATTATCCTATACTTAAAATTAGTTTT-ATCTTGCTCATTG---ATAAGTTCTA--ACTTT-AA-TGATGTGCAGGAAATAAGTATGA------TATATGACCAATGATTTCATTATG--AT-AAATAAGGAATATGAGTATAAGGTACAACGATGCATGGTTTTGGATG---GCAGTCAAACAAGAAAATTACCA-ACCAACAA-GTTCAATG-TCA-CTTAAAT--TCTCCTCTTCCAACATGTTGAGACATTCTAAGGGCATCATCTAGTCT--------GCCTT--CCTCTTT-GACATCCTTG-AGAACTCTCTGCCTTTT-AGAGGACCTATTCCACATGCTAGGCTGTAACT--CTGGGGACAACTTTTGG--TAAAGATAA-TTCGGGA-TTATGTT-CTTCGTGG---TG--TTGGCACCGACTTCATCTTATTTGCACAAGCCAGC-C---G---CTCACCTGCTTCCAG--TGGTCAAACC-GTCTTC--ATGCGCC-----AA-CTCTTTTTTCTGCTCTTC-------AGTAGGG-TATGG-G-TTTTCGCAAGATTTGC-TTTG-----G---TACCA-ACTT-GCTTTAGG-AAATAT-ACAACAT-TTGGGAGGCCATGGGCTGGAAAAGGCA-GAACGTATCCTTATTAATGGTCTT-C----AATTTAATTGGATGCTGGTTTCGC--TG-TGACTTGGACAGGGT-A---TTGAAA-CACCG-CACTCTTTTG-TTGGCCAAT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCTCCACCAGCTCGTGCCTACTTCGGTGTCGGTGGGATAATGGGTACTGGGTGTGGCTCTGGTATCCAATTG-TT-AGTACATTG----GT----CTCAT-C---------------CTCTCT--T------------TTTCTC-TGA-GGTATTGCTTGGT-TGGA-TGT-CCTCTGGTG------------------------------T-AATAG-GACTG--AGTCACTG----TGGC--TATAAATGGGG-TGAATTGATAAA-GT-TGGAAGGC-AATTTC---------ATGTTGAGC--GTAAGTAATCGAACATGGTGAAGCACTGG-----------------GGCTGGATAGCTGTAGTGCAACATAGAAGC-AGGTGGGCAGACTTTGGGAGAA-------ACACTATGATCACTGGGG--AAAGCTG-TAGGCAACACACGAAGCAGGTGGGCAGGCACTTGG--GAGAAA-CAC-TATGAATCACTG-GGAGG-AAATATTTCAACTG--------AAGCAAC-A-GCATCTTTTCGCGGT-AATTCCAACTC-ATTCTTCCCCCACTGGCCTGTTTGAAGGAGTCCACAACCAC-TGTCCACTTGCAATGAC-GGACCTAG---GTCGTGTCTTAAT------CGCAGAATGCCACTTCACTGTTTCAGAGGAAGGCACTGCTGCCCACTGAAAGGTGAAGATGAGAA--TGGTGGGAGAAATGGTTGGGTGATTTCTGTTTC-------AA-----------------GTCAGGTGTATCAGTGAGAAAC--AGCAG-----CATCTG--GT--GACTTGAG-CTTGA--C--CGAAG-A-TGTCAGA--GGAGAAAGTGGAATCAGAGCGAAGATGC-----TATGGAGT--G-GCTCCA-TATT--GTTGAAGGGCA----AGAGGTTGGTTATATAA-CC-------TGAG--GAAAAC--------ATGA--TTGA---------------TGCA-GCAAGA-TACATCT-TTGGATGTTGAAG-ATATT-GGAATTGTAGA-GAGAAAGGCCCAGGAATTTGGCAAGATTCTGAGAGCAGGCTCTGT-GTTGGG-TTGTG-TGTTGG-GATG-ACTTTT-GTG--GGATCTGG-AATTT-TGCTGGGAAGCAGACCGCTGTTGTATCCAATTGTTAA-TTGTTATCATGGGTCACAGTCTGGGAT---CAGGGGTGGAAGTGGAAGGC-TTGATT-GA-A-GGCCAA-TGTCT-CTGC
gi|20 : agaacacctTGGAGCACTGG-----------------GGC-----AGCAGCTGTGGGG--TAG--GC-AG--------ACGTTGGGAGAA-------ACctgggtaagggg
gi|3 : tgaattaggactaaccatctgtTGCTGTGAGACTT--GGCTGAA--CAAGGCGGAA-TGTCTGAAGG----AATCGGATCCTGAG-GACGG-AC-----TATGG-GTGGG-G-TCCA-TATTGGGTTGAGA---AGCAGAGAGGCTGGTTATATGATCCATATGGTTGAGCAG-AGGCTGGTTATTATGAGTCTGAGGAAACATGATTTGATGCATGCAA-ATTACACCT-TTGGACTTTGAAGCATATTGGGCATAGTAGATGAG-AAGGCCC-GGAATATGGC-AGATTCTGAGACT-GGCTCTGTAGTTGGGTTTGGGTTGCTGGTACTG-ACTTTTAGATTGGGGTCTGGAAATAACTGCTAGGAAA-GAG-CAATGCCGTATCC-ATTATC---TTCCA-------GTTA----CT-GGAT---------TGGA------------TG--T-GACA-GG-CAT-TACCTACCGCAA-GGACATTCT--GGAGCTGGCTGAAAATGGGATTCCTCTGCATTTGGTTGGAAGAACTGG-GTGGATTGACAGGCTTTCATGGTTGTT-TTGT-TGTGCT-TGG-CTGG-ATGT-GGTG-TTTGACTGG-CTGTTTGGAAAAGCGGGTGGCTGGAGG-GGAGAAGAT-TTCTGT--CCTGCACTT-GTATATCTGTGGATAA--TCTGGGAAACCTC-TGGCCAGTAGTCGCTGGGGCTGAA-CTTATTTTAGGGGTAAA-GTGCTGTAACTCTGAGTGGCAAAGC-A-TACTGCTGCTAGC-TG-TACACAAAAGCATCTGGATATGTTCTG-TAGAAACCT-GGGGTAACACTATCTGTT-GGA--T--G-GTCTGTTGAGGCGAAGG----TGTAAGAAAGTGTTG-TATTCC
gi|4 : tTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTC-----G---TACCA-A--T-GATTTA-G-AA-TATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACATTTCCCTCTTCAT--TCTCTT---AAACTTAATTGGATGCTGGTTTC-C--AG-AGA--TAGACAGGGT-G---TTGAAA-CACCG-CACCCTTTTG-TTGGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGCAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAGTTG-TTAAGTACATTG----GTGAAGTCCATGCACATGAA-ATTCTTGCTTTCT--TCATCCTC-TATCTTTCTCTTAAGGGGATTGCTTTGT-TGAA-TTT-CGTTTGGTG-T-GTTAGCA--AA-TATTTCC-TCTCCTCT-AATAG-GACTG-TTGTCACTA----AGGC--TA-AAATGGGA-TGAGTTGATAGA-GT-T-GAAGGC-AGTTTC---------ATGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACT-G-----------------A-------AGCAG--G-------TGG--GC-AG--------ACGTTGGAAGAA-------ACGCTATGATCACTGGGG--GAGGCTG-TAGGCAACACA-GAAGCAGGTGGGC---CA-TTGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TCTGAT-GA---AAGCAC--A-GCATCTTCT-GCAGT-AATTCC-ACTC-ATT-------TACTGGCCTGATTGAGGATATCCAC-ACCAC-TGTCCACTTGCAATGAC-AG--CTTGTTAGTTG-AAGTTAAT------TGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCACTG-AAGCTG-AGATGAGAAC-TGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATTGATGAGAAATGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--TGAGAAAG-A-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGG-AA-A-TACACCTA-TGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTG-TTG-AATG-AGTTTT--GT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-A-TTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAA--GGAAGGC-TTGATT-GA-C-TG-CAA-T-CCT-CTGCcatgcattcatcagagaaggtgcctgccacaactgaagaacaaggagcttagacaagtgcaataccaatatttgatgtgtatgaagaagtttgttgtctcagaattctgagcacccaataatttcccataggaaaggatgctttcggtggtaaggttatgatataaaagaaggagcacttgactgagactcagtacataagtttataagcgcgctggtggtgggcatgctccaacattctgagactaactcagcatggccaaacttcctcgcatccacgctcttccccatcacgtagtgccagtaattttgcaatccatcgacagaacccagggtttactttgtgttttctaaaaaattagtcaggaaataatcacttcagaactagcactacacactatgataaacacacaatcggataataactttataagtggaaagagtgggaattaggtcactgtaattgtgtaatgattagtctttaatttggagtatgggacagcgagcaaaggt
gi|5 : AGTCT-GGAT---GA-GGGTGGAA--GGAAGGC-TTGA-TTGA-C-TG-CAA-T-CCT-CTGCAA-GGACATCCT--GGAGCTTGCTGTAAATGGGATTTCTCTGCATTTGGTT-AAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG-CTGGAATGT-AGTG-TTTGACTGGTCTG-TTGGGAAAGT-TATGGGTGGAGG-TGAGAAGGTATTC--T---CTCTATCT-GT-GATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCT-GTAGTT-TTGAGGC-G--------------GGT-AA-GTGCTGTACATCTGATTGGC--AGG-A-TACTGTTGCT-GCATG-TA--------CTTCT-GATCTGTACTA-GAGAAGGCC-T-GGTAAC----TATGTT-GGA--T--GTGTCTGTT--GCCAT-GA----TG-AAGAAA--CTTG-TCTTCCATTCT
gi|6 : AGTCT-GGAT---CA-GGGTGGAG--GGAAGGC-----------------AA-T-CCT-CTTCAA-GGACATCCT--GG------TTGTAAATGAAATTTCTCTGCATTTGGTT-GAATAACTGG-AAAAA--AGAAGGC-TTCATATTAGTT-TTGC-TGTTCTGTTG-CTGGAATGT-GGTG-CTTGACTTGTCTG-TTGTGAAAGT-GATGGCAGGAGA-TGAGAAGATATTC--T---CTCTATTTGGT-TACCTGTGGACAA--GCAGAGAGC-CTC-TGTCC-GTA---------GC-GAATCTC-TA-----GGT-AA-GTTCTGTACATC-----------AG-A-TGCTGATGCT-TCGTG-TA--------CTTCT-TATGTATTCTG-TAGAATTCC-C-TGTAAC----TCTGGG-GGAGGTAGGTGTCTGTT--GCCAC-GG----TG-AAgaagagcctgtacagtcgaacaacgagcttaagtctccaatatttgatttatgaagaatttttggagtctcaattcagcataaatgatgattttcaatgaaggatgctttgaattctgatttgatgatagcttgtacatggagctggcttcagtccagtatatatagctggtggtggacatgttctctattacctgagactctcgacttcatgccaacctcctcctcactcctctccatgccagccattgcaatccatcctcgacattgttttccttgtgcagtatatcaatatacatccagaaaaattgaattcatagtaatttctgacaattacacttatcaaattatgtttacagtgcagttcagctttaacagtgggaatgggacacctgtaattgggtaataatgattagattaattggataatggaggagcccaggtgt
gi|7 : AATTA-CA-A--AACAAGGCTTCATGTTCACCTT-AGTGCTTTCCTCATCCAACGTA-TGA-ACATTC-AAGGACAATGT--GGTTTCTTACGTGGCT-TCACTTCTTTGGATATCCATGTAGA--CCTCTGCTTTTCAAGA-G-CCACTTACACATGCT-GGCT-TA--CTGCTTTGG--AAC-TTTGGATTAAACGTAATTTC-GGACTT-TGTT-CTTC-TGTTTATGTCTTTTCA-CGA---CACC---TTTGCTC--GC--GC-CCAGACGTCTCACCTG--TTCAGTTTGG-CAGGCCGGT-TTCTAAT-T-CCTTCATATGCTCAT-CTTCTGTGATTCCTCGCTTTGTGGGGATGGAGTG-TTGTC---AG--TGGGATCTGCACCAGCTTTACCACA--TAGATTTA-GCAAGTATC-CGAGAC-TT-TG-GGCCAT-GGCTGGAGA--GCACG-ACATTGTCCTCTCATTG--CTC-CGTTAAACTTAAGTTGATGCTGGTTTC-CCAAGCAGA--TAGA-AGGGT-G---TTGAAA-CACCGCCGCCTTTTTGTTTTG-C-ATGCCACTCTGTTCAC-TGTTTGC-GGTCAGTCTTGACAGCCacattccttgaagctgaggcctgttacagtatcactattgtttatgattacagaggtaaagtgaacaaacactcagcatcaggaattttgtacgtcctctaccatcgataggcttttgatgacttacttgggactaagctcactcagagagcaggatgagcaccagtcgaacagtatatatagcgtgtgttggtacaactctctattacctgagactctcaacttcatcctttgtccttctcatactccacccattagtgccagtaaatctgacacaatacctccacaagatgtcttctttagtgtattatgagcaaaattattagtcaatattataacttcaaacattaattacaacttatgtgcaggaatttgtttatataagatggccccatgttcagctttatagagtgacccgcggcaatcaaacacctcgttaagctacatgcgtgtagattaattgggatggagccaaggaattgg
gi|9 : CTATTGTTC-------TGTGAGG-TAGGG-G-TTGTC-CAGA--TGAG-TTTG-----G---TATCA-C--T-GATTTA-G-AA-CATCG-GCGACATT-GGAGGCCATGGGCTGGAAA--GCA-G-ACGTATCCTTCTTAATGGTCTT-C---AA-TTTAATTGGATGCTGGTTTC-C--AG-TGA--TTGACAAAG--GTA-TTGAAACACCCG-CACC-TTTTGTT-GGCC-AT-C-ACT-TCTTCACTTGTTTGCGGGTCAGTCCTGATAGTCT-CACCAGCTCGT--CTACTTCGCCGCCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTGTTTAAGTACATTG----GT----TTCAT-C---------------CTCTCT---------------TTTCTCTTTGAGATATTGCTTTGTATGAA-TGTATGTCTGGTG------------------------------T-AATAG-GACTG-TTGTTGCT-----AGGC--T-------------AGTTGGTAGA-TT-T-GAATGC-AATTTC---------Agt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TATACAGTGGAACAAAGTGCTGAAGAAGGTCTCCAATGTTTGATGATGAAGGCTTCAGTTCACTATGCAGCAATTCTGGAAATGTCTTTGAATTCTTGTTGAGTGATAGTTATGGTAATGGGACAGAGCCATCCAGGACAGTATATATAGCTGGTGGTGGACATGTTCTCTATTACCTGAGACTCCTGTCATGCCAACCTCCTCCTCACTTCTCTCCATAGAGCCAGCAATGGCAGTTCCTAAGATTGTTTTGGTTGTGCAGTGTATCCAGTATGCATCCAGCTAAATTAAATTCCTAGTAATTTGTTACCATGACACTATCAAAACATGTATAGAGCAGGCCAGCTTGTACAGTTAGACTTCCATACCTATAATTGGGTAATGATTAGAGCCTGTTGACAATTGAGGAGCCCAGGTGAGA
Unaligned ( gi|21 ): GTGGGAATTAGGCACCTGTAATTGTGTAATGATTAGTTTAATTGGATAATGGAGGAGCAAAGGT
Alignments
lowQualScore : 111 22222 1 111 111 1 3333333 11 222 11 3333 1 1 1 2222 11 11 22 1 22 5555555555 222222 11 1 1 1 1 1 333333 222 1 111 1 1 1 1 1 222 11 1 222 222 4444444444444444444 11 11 1 11 111 22222 2222222 11 222222222 1111 22 11 22 111111 3333 1 11 1111 999999999999999999999999999999999999999999999 5555555555555555 11111 222222222 22222222 8888888888888888888888888888888888888888 22222222 2222222 11 11 22222222 1 1 1 3333333 1 1 222222 111 1 222222 1 1 1 1 1 1 1 11 1 333333 1111 222 1111 11111 22222222 2222222 11 22222222 555555555555555 222 2222 1 222222 111 111111 111 2222222222 111 11 1 11 2 1 222222 1 111 8888888888888888 22222222 222 1111 1111111 11 2222222 111 1
lowQualScore : 777 77777 0 1 0 1 777 3 000 0 1 1111111 0 33 7 66 1 3 333 6 0 88 0000 5 5 7 3 2222 33 7 33 7 1 55 7 7 6 3 00 1111111111 444444 33 3 7 2 3 3 7 1 3 6 999999 555 3 333 1 3 3 3 3 3 6 333 88 3 333 555 4444444444444444444 88 88 7 6 2 33 444 55555 2 6 6666666 8 8 8 8 11 8 444444444 4444 8 22 3 8 88 0 0 11 8 8 1 0 00 999999 0 6 99 77 99 0 6 3333 7 3 6 5 9 2 6 6 2 6 3 1 2 1 8 11 66 5 8 0 8 8 5 7777 333333333333333333333333333333333333333333333 3 1 1 6 6 6 1 9999999999999999 6 6 5 6 55555 99 6 5 6 6 6 6 666666666 6 11111111 0 8 1 1111111111111111111111111111111111111111 99 6 44444444 1111111 1 55 8 8 0 0 44 8 11 8 8 8 8 8 8 8 0 66666666 88888 8 4 0 9 0 2222222 1 2 0 0 0 0 222222 777 0 888888 0 3 0 0 0 0 2 0 0 22 0 3 0 2 2 2 0 2 111111 1 99 6 0000 111 99 4444 6 66666 6 99 6 6 6 99 22222222 0 0 6666666 11 8 99999999 88 000000000000000 000 8 8 2222 5 0 8 8 8 8 1 0 0 8 0 3 0 8 8 333333 8 8 8 8 666 3 1 5 444444 111 3 77 2222222222 5 111 5 8 11 0 3 6 8 11 0 8 0 8 8 8 0 8 0 0 0 0 0 77 1 6 111111 1 6 77 99 3 6 6 111 4444444444444444 6 6 2 99 8 8 8 8 3 8 99999999 8 1 88 1 666 7777 8 3333333 11 7777777 8 444 0
lowQualScore : ... ..... . . . . ... . ... . . ....... . .. . .. . . ... . . .. .... . . . . .... .. . .. . . .. . . . . .. .......... ...... .. . . . . . . . . . ...... ... . ... . . . . . . . ... .. . ... ... ................... .. .. . . . .. ... ..... . . ....... . . . . .. . ......... .... . .. . . .. . . .. . . . . .. ...... . . .. .. .. . . .... . . . . . . . . . . . . . . . .. .. . . . . . . .... ............................................. . . . . . . . ................ . . . . ..... .. . . . . . . ......... . ........ . . . ........................................ .. . ........ ....... . .. . . . . .. . .. . . . . . . . . ........ ..... . . . . . ....... . . . . . . ...... ... . ...... . . . . . . . . . .. . . . . . . . . ...... . .. . .... ... .. .... . ..... . .. . . . .. ........ . . ....... .. . ........ .. ............... ... . . .... . . . . . . . . . . . . . . . ...... . . . . ... . . . ...... ... . .. .......... . ... . . .. . . . . .. . . . . . . . . . . . . . .. . . ...... . . .. .. . . . ... ................ . . . .. . . . . . . ........ . . .. . ... .... . ....... .. ....... . ... .
lowQualScore : 555 22222 2 0 0 0 555 2 222 0 0 5555555 8 88 0 55 0 2 333 7 7 33 0000 5 5 3 3 7777 33 3 33 3 0 33 3 3 7 3 00 3333333333 777777 33 3 3 0 3 3 3 0 3 7 333333 000 3 777 0 3 3 3 3 3 7 333 33 3 333 777 7777777777777777777 33 33 3 7 0 88 000 00000 5 5 0000000 0 0 0 0 00 0 000000000 8888 0 00 8 0 66 8 8 00 0 0 4 6 00 222222 8 7 22 77 22 3 7 0000 7 2 7 2 8 5 7 7 5 7 2 0 5 0 0 00 22 0 0 8 0 0 6 0000 333333333333333333333333333333333333333333333 2 0 0 7 7 7 0 5555555555555555 7 7 7 7 88888 22 7 7 7 7 7 7 777777777 4 22222222 8 0 0 3333333333333333333333333333333333333333 22 7 22222222 7777777 4 88 0 0 8 8 66 0 00 0 0 0 0 0 0 0 8 88888888 66666 0 2 0 0 0 5555555 0 5 2 8 0 0 888888 555 0 888888 0 2 0 0 0 0 0 0 0 55 0 2 2 5 5 5 2 0 000000 0 22 7 8888 333 22 2222 7 77777 7 22 7 7 7 22 00000000 8 8 0000000 00 0 00000000 88 000000000000000 000 0 0 8888 6 6 0 0 0 0 4 8 8 0 8 6 6 0 0 000000 0 0 0 0 888 2 7 7 444444 999 6 11 4444444444 7 666 7 0 00 8 8 0 0 00 8 0 6 0 0 0 8 0 4 8 8 6 8 33 0 7 222222 7 7 77 22 3 7 7 777 5555555555555555 7 7 5 22 0 0 2 0 8 0 00000000 0 4 66 0 888 0000 0 8888888 00 0000000 0 000 0
consensus : ACCCAAAAGTGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATNCTATACTTAGAATTAGTTTT-ATCTTGCTCNTTG---ATAAGTTCTATTACATT-AA-TGGTATGCAGNAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGNAATATGAGTATA---TACAACGATGCATGGTTT--GATG---GCAGTCAAACAAGAAAATTA-CA-A--AACAAGGCTCAATGTTCACCTTAANTG-TCTCCTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGTCT--------GCC-T--CCTCTTTGGACATCCTTG-AGAACTCTCTGCCTTTT-AGA-GACCANTTCCACATGCT-GGCTGTA--C--CTGGGG--AAC-TTTGGATTAAANGTAA-TTC-GGA-TT-TGTT-CTTCGTGT---TG--TTTTCA-CGA---CACCT--TTTGC-C--GCCAGC-C---GCGCCTCACCTG--TTCAG--TGGTCAGGCCGGTCTTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTG-----G---TACCA-A--T-GATTTAG-AAATATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACGTTTCCCTCTTAATGGTCTC-C---AAACTTAATTGGATGCTGGTTTC-C--AG-NGA--TAGACAGGGT-GT--TTGAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTG-TTAAGTACATTG----GT----TCCATGCACATGAA-ATTCTTGCTCTCT--T-ATC--C-TATCTTTCTCTTGAGGGNATTGCTTTGT-TGAA-TTT-CGTCTGGTG-T-GTTA-CA--AA-TATTTCC-TCTCCTCT-AATAG-GACTG-TTGTCACTA----AGGC--TA-AAATGGGA-TGAGTTGATAGA-GT-T-GAAGGC-AGTTTC---------ACGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGG-----------------A-------AGCAG--GT------TGG--GC-AG--------ACGTTGGGAGAA-------ACGCTATGATCACTGGGG--GAGGCTG-TAGGCAACACA-GAAGCAGGTGGGCAGGCA-TCGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TCTG-T-GA---AAGCANCAA-GCATCTTCT-GCGGT-AATTCCGACTC-ATT-------CACTGGCCTGNTTGAGGATGTCCAC-ACCAC-TGTCCACTTGCAATGAC-GG--CTTG---GTTG-GAGTTAAT------CGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCGCTG-AAGCTG-AGATGAGAAC-TGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATCGGTGAGAAACGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--CGAGGAAGAA-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGGCAA-A-TACACCTATTGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATG-AGTTTT-GGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-A-TTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--GGAAGGC-TTGA-T-GA-A-NG-CAA-T-CCT-CTGCAA-GGACATCCT--GGAGCTNGCTGTAAATGGGATTTCTCTGCATTTGGTT-GAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG-CTGGAATGT-GGTGTTTTGACTGGTCTGTTTGGGAAAGC-GATGGNTGGAGG-TGAGAAGGTATTC--T--CCTCTATCT-GT-NATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCC-GTAGTTGTTGAGGC-GAA-CTT-T------GGT-AA-GTGCTGTACATCTGAGTGGC--AGG-A-TACTGCTGCT-GCATG-TA--------CTTCT-GATCTGTACTG-TAGAAGNCC-TGGGTAAC----TCTGTT-GGA--T--GTGTCTGTT--GCCGTAGG----TG-AAGAAA--CTTG-TCTTCCATTCT
Reference ( family-6572 ) : ACCCAAAAGTGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATNCTATACTTAGAATTAGTTTT-ATCTTGCTCNTTG---ATAAGTTCTATTACATT-AA-TGGTATGCAGNAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGNAATATGAGTATA---TACAACGATGCATGGTTT--GATG---GCAGTCAAACAAGAAAATTA-CA-A--AACAAGGCTCAATGTTCACCTTAANTG-TCTCCTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGTCT--------GCC-T--CCTCTTTGGACATCCTTG-AGAACTCTCTGCCTTTT-AGA-GACCANTTCCACATGCT-GGCTGTA--C--CTGGGG--AAC-TTTGGATTAAANGTAA-TTC-GGA-TT-TGTT-CTTCGTGT---TG--TTTTCA-CGA---CACCT--TTTGC-C--GCCAGC-C---GCGCCTCACCTG--TTCAG--TGGTCAGGCCGGTCTTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTG-----G---TACCA-A--T-GATTTAG--AATATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACGTTTCCCTCTTAATGGTCTC-C---AAACTTAATTGGATGCTGGTTTC-C--AG-NGA--TAGACAGGGT-GT--TTGAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTG-TTAAGTACATTG----GT----TCCATGCACATGAA-ATTCTTGCTCTCT--T-ATC--C-TATCTTTCTCTTGAGGGNATTGCTTTGT-TGAA-TTT-CGTCTGGTG-T-GTTA-CA--AA-TATTTCC-TCTCCTCT-AATAG-GACTG-TTGTCACTA----AGGC--TA-AAATGGGA-TGAGTTGATAGA-GT-T-GAAGGC-AGTTTC---------ACGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGG-----------------A-------AGCAG--GT------TGG--GC-AG--------ACGTTGGGAGAA-------ACGCTATGATCACTGGGG--GAGGCTG-TAGGCAACACA-GAAGCAGGTGGGCAGGCA-TCGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TCTG-T-GA---AAGCANCAA-GCATCTTCT-GCGGT-AATTCCGACTC-ATT-------CACTGGCCTGNTTGAGGATGTCCAC-ACCAC-TGTCCACTTGCAATGAC-GG--CTTG---GTTG-GAGTTAAT------CGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCGCTG-AAGCTG-AGATGAGAAC-TGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATCGGTGAGAAACGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--CGAGGAAGAA-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGGCAA-A-TACACCTATTGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATG-AGTTTT-GGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-A-TTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--GGAAGGC-TTGA-T-GA-A-NG-CAA-T-CCT-CTGCAA-GGACATCCT--GGAGCTNGCTGTAAATGGGATTTCTCTGCATTTGGTT-GAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG-CTGGAATGT-GGTGTTTTGACTGGTCTGTTTGGGAAAGC-GATGGNTGGAGG-TGAGAAGGTATTC--T--CCTCTATCT-GT-NATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCC-GTAGTTGTTGAGGC-GAA-CTT-T------GGT-AA-GTGCTGTACATCTGAGTGGC--AGG-A-TACTGCTGCT-GCATG-TA--------CTTCT-GATCTGTACTG-TAGAAGNCC-TGGGTAAC----TCTGTT-GGA--T--GTGTCTGTT--GCCGTAGG----TG-AAGAAA--CTTG-TCTTCCATTCT
gi|1 : ACCCAAAAATGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATGTTATACTTAGAATTAGTTTT-ATCTTGCTCTTTGGTAATAAGTTCTATTATATT-AAATGGTATGACGTAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGTAATATGAGTATA---TA--ATGATGCATGGTTT--GATG----CAGTCAA-CA-GAAAA--A-CACA--AACAAG-CTCAATGTTCAC-TTAATTA-TC--CTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGT-T--------GCC-T--C-TCTTTG-ACATCCTTG-AGAACTCTCTGC-TTTT-AGA-GACCATTTCCACATGCT-GGCTGT---C--CTGGG---AAC-TTTGGAT--AAAGTAA-TTC-GGA-TT-TGTTTCTTCGTGT---TG--TTTTCA-CGA---CACCT--TTTGC-C--GCCAGCACA--GCGCTTCACCTG--TTCAG--TGGTCAGGCCGGTTTTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-GGTTGTC-CAGG--TGGG-TCTC-----G---TACCA-A--T-GATTTAG--AATATCACGAGAC-TT-TGAGGCC-TGGCTTGGAGA--GCA-G-ACATTTCCCTCTTCAT--TCTC-T---ATACTTAATTGGATGCTGGTTTC-C--AG-AGA--TAGACAGGGT-GT----GAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGG-TCAGTCCTGACAGCCT-CACCAGCTCGT--CTAC--CGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAGTTG-TTAAGTACATTGTGAAGT----TCCATGCACATGAA-ATTCTTGCTTTCT--TCATC--CCTATCTTTCTCTTAAGGGGATTGCTTTGT-TGAAATTT-CGTTTGGTG-T-GTTAGCA--AAATATTTCC-TCTCCTCT-AATAG-GACTGTTTGTCACTA----AGGC--TA-AAATGGGA-TGAG-TGATAGA-GT-T-GAAGGC-AGTTTC---------ATGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGG-----------------A-------AGCAG--GT------TGG--GC-AG--------ACGTTGGAAGAA-------ACGCTATGATCACTGGGG--GAGGCTGTTAGGCAACACA-GAAGCAGGTGGGCAGACA-TTGG--GAGAAA-CAC-TATG-ATCACTG-GG-GA-ACATATTTT-TCTG-T-GA---AAGCATCAA-GCATCCTCT-GCAGTAAATTCC-ACTCAATT-------TACTGGCCTGATT-AGGATATCCAC-ACCACTTGTCCACTTGCAATGACAGG--CTTG---GTTG-AAGTTAAT------TGCAGGAT-CCAC-TC-CTG-TTCAGAGG-AGGCACTGCTG-CCACTG-AAGCTG-AGATGAGAACTTGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATTGATGAGAAATGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--TGAGAAAG-A-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AA--GCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAG--AA-A-TACACC-AT--GACTTTGAAGCATATTGGG-ATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATGAAGTTTT-GGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-ATTTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--AGGAGGC-TTGA-T-GA-ACTG-CAATT-CCT-CTGCAAGGGACATCCT--GGAGCTTGCTGTAAATGGGATTTCTCTGCATTTGGTT-AAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG--TGGAATGTAAGTGTTTTGACTGGTCTGTTTGGGAAAGT-TATGGGTGGAGGTTGAGAAGGTATTC--T--CCTCTATCT-GT-GATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCT-GTAGTTTTTGAGGC----------------GGT-AA-GTGCTGTACATCTGATTGGC--AGG-A-TACTG-TGCT-GCATGTTA--------CTTCT-GATCTGTACTA-GAGAAGGCC-T-GGTAAC----TATGTT-GGA--T--GTGT-TGTT--GCCAT-GA----TG-AAGAAA--CTTG-TCTTCCATTCT
gi|10 : TGGTCT-GGGTCCAGA-GGGTGAAG--GG----CGTTGA-TTGA-A-GG-CAA-G-TCC-CTGCAA-G-ACATCCCTGGGAGCTGGCTGTAATTTGGATTGCTCTGCATTTGGTTTGAAGAACTGGGAAGGG--GGA--GC-TTAGTGGCTGTTCTTGTATGTTCTGTGGACTGGAATGT-GGTGTTT-GGCTGCTCTGTT-GGGAAAGT-GATGGGTGGAGG-TGAGAAGGTATTC--C--TCTCTATCT-GT-GATCTGTGGGTAAAGACAGGGAAAGCTCTTGTCC--TAGATGTTGAGGC-------T-T------GGT-AACGTGCTGTACATCTGAGTGGC--AGGCATTACTGCTGCT-GCATG-TA--------CCT-T-GATCTGTACTGTTAGAAGTCTGTGGGGAAC----TCTGTTGGGA--T---TGCCAACT--GCTGTAAGGCCTTG-AAGAAA--TTTGATCTTCCATTCTccag
gi|11 : A-TGAATCCGTAAA-GT-T-GAAGGC-AGTCTC---------ACATTGAGT--T---A-TATCCAGC-CCCTGAAACACTGGAGCTGAAGCTGTAGGGTA-------GGCAG--G-------TGG--GC-AG--------ATGTCGGGAGAA-------ACACCGTAATCACTGGGG--G
gi|11 : CACTGGAGCTGAAGCTG-TAGG----GTA-G--GCAGGTGGGCAGATG-TCGG--GAGAAA-CAC-CGTA-ATCACTG-GG-GGGAGATATCGC-TTTG-AAGA---AAGCTGCAA--CATCTTCT-GCTGT-AATTTCGAATA-AGT-------CACTTTCCTGTTTGATGCTGTCCAC-ACCAC-TGTCCACTTGCAATGG-------TTG---ACTG-GAGCCAATGAAATTCACAGAAT-CCTTTTC-CTG-TTCAGAGG-AGGCACTGCTA-CTGCTA-CTGCTG-CGAGGAGAAC-TGGAGGGGGAAATGATT-TGTGATCTCTGTTGCTGTGATAAAGCAGTGATGACATTCAAGTCCGGTGTATTGGGGAGAACCGGAGCA------TGTTTGgagatatcgctttgaagaaagctgcaacatcttctgctgtaatttcgaataagtcactttcctgtttgatgctgtccacaccactgtccacttgcaatggttgactggagccaatgaaattcacagaatccttttcctgttcagaggaggcactgctactgctactgctgcgaggagaactggagggggaaatgatttgtgatctctgttgctgtgataaagcagtgatgacattcaagtccggtgtattggggagaaccggagcatgtttg
gi|12 : atgaatccgtaaagttgaaggcagtctcacattgagttatatccagcccctgaaaCTGCTGTGAGACTC--G-CTGGA--TGAGAAAGA--TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGG-AA-A-TACACCTA-TGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTG-TTG-AATG-AGTTTT--GT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-A-TTGTAGTCGTGGGTTAT
gi|13 : TAGCGACTG-TTGTCACTATCCTAG-C--TA-AAAGGGGA-TGAGTGAATAGATGTCT-GAAGGCGAGTTTCCCTCGTTTAACAT-GAGTCTG---G-A-TCTGAC-TCGTGAA-CACTG------------------A-------AGCAG--GT------GGA--GCGAG--------ACGTTGGAAGAATCAAATCGCTCTATGTTCACTGGGGT-GAGGCTG-TAGGCAACACA-GAAGCA-GT-GGCAGG-A-TCAGTTAAGAAACCACTTATG-ATCACTGAGG-GG-ACATATTTC-TC-A-T-GATCGAAGCGTCAGTGCATCTTCT-
gi|14 : TAATTGGATTACGGTT-C-C--AG-TGA--TGGACAGTGTTGTAGCTGAAATC-------------TGCTTGGGC-CT-CAACT-TGTT-------TTGCAATTCAGTC-----------CA--AG---------A----GTTGTCAGTGG--T-GTGG-TAC-AGACGTGGGGCGGGCA-CCAATTG-TTCAGTACATTG----GT------------CA-GAATATCCATCCT---------TC--C-AATCTTTCTCGTGAGGGATTTACTTTGC-TGAA-CTT-CCCCTGGTGTT-GTAA-CA--AG-CATTTCCTTCTCCTCTGAATGG-Gtgcag
gi|15 : atgAAAGTGGAATGAAATGAAAGGAAAATTAAAAAAATCCAAGAAACGACATTCAACATTTAGAATTACTTTTTATCTTACTTGTTG---ATAAATTCTTTTACA---AA-TGAGATGCAAAAATTCAGTATGAT------ACATGAGCACTGATTTGATTGTA--ATGAATTA-GAAATATGAGTATA---TACAATAATACATGGTTT--GATGCATGCAG
gi|16 : ACCCAAAAATGGAATGAAA---GAGGAA-G---AAATAACCGAAGAAGCATTATGTTATACTTAGAATTAGTTTT-ATCTTGCTCTTTG---GTAAGTTCTATTATATTAAA-TGGTATGCAGTAAATAAGTATGATAATGATATATGATCAATGATTTCAATATATGATAAAAT-AGTAAT-TGAGTAatagaaca
gi|17 : aaaacGTTCTCTAAT-ATT--C-TTTCTT-CTCTTGAGGATAT-ACTCT-C-TGCC-TTC-CACC-GGTG-TTGTT--CATTGA-TATTTCC-TCTCCTCT-AATAG-GA-TG-TAGTCACCA----AGGCTGTA-AATTGAGATTTAGTTGAT
gi|18 : ttagtccaggcccatgaaaagttgttctgtttcttgattccggaGAAAGC-GGTGGCTGGAGG-GGAGAAGATATTC--TGTCCTC---CT-GT-TATCTGTGGATAA--GCTGGGAAA-CTC-TGGCC-GTAG-TGCTGGGGCTGAA-CTT-TTG----GGT-AA-GTGCTGTACATCTGAGTGGC--tca
gi|19 : GGAGCAAGAGATTGTTTGCTGTAAGACCC--A-ATGGAAACAAGGGAGAACTGTCGAA--G----GAATGGATCCTGAG-GATGGTACTCGCATGTGG-GT--GAG-TCCAGTATT--ATTG
gi|2 : AAGTGGAATTTAA---GGGGAAA-----AATAACCAAAGAAGAATTATCCTATACTTAAAATTAGTTTT-ATCTTGCTCATTG---ATAAGTTCTA--ACTTT-AA-TGATGTGCAGGAAATAAGTATGA------TATATGACCAATGATTTCATTATG--AT-AAATAAGGAATATGAGTATAAGGTACAACGATGCATGGTTTTGGATG---GCAGTCAAACAAGAAAATTACCA-ACCAACAA-GTTCAATG-TCA-CTTAAAT--TCTCCTCTTCCAACATGTTGAGACATTCTAAGGGCATCATCTAGTCT--------GCCTT--CCTCTTT-GACATCCTTG-AGAACTCTCTGCCTTTT-AGAGGACCTATTCCACATGCTAGGCTGTAACT--CTGGGGACAACTTTTGG--TAAAGATAA-TTCGGGA-TTATGTT-CTTCGTGG---TG--TTGGCACCGACTTCATCTTATTTGCACAAGCCAGC-C---G---CTCACCTGCTTCCAG--TGGTCAAACC-GTCTTC--ATGCGCC-----AA-CTCTTTTTTCTGCTCTTC-------AGTAGGG-TATGG-G-TTTTCGCAAGATTTGC-TTTG-----G---TACCA-ACTT-GCTTTAGGAAATAT-ACAACAT-TTGGGAGGCCATGGGCTGGAAAAGGCA-GAACGTATCCTTATTAATGGTCTT-C----AATTTAATTGGATGCTGGTTTCGC--TG-TGACTTGGACAGGGT-A---TTGAAA-CACCG-CACTCTTTTG-TTGGCCAAT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCTCCACCAGCTCGTGCCTACTTCGGTGTCGGTGGGATAATGGGTACTGGGTGTGGCTCTGGTATCCAATTG-TT-AGTACATTG----GT----CTCAT-C---------------CTCTCT--T------------TTTCTC-TGA-GGTATTGCTTGGT-TGGA-TGT-CCTCTGGTG------------------------------T-AATAG-GACTG--AGTCACTG----TGGC--TATAAATGGGG-TGAATTGATAAA-GT-TGGAAGGC-AATTTC---------ATGTTGAGC--GTAAGTAATCGAACATGGTGAAGCACTGG-----------------GGCTGGATAGCTGTAGTGCAACATAGAAGC-AGGTGGGCAGACTTTGGGAGAA-------ACACTATGATCACTGGGG--AAAGCTG-TAGGCAACACACGAAGCAGGTGGGCAGGCACTTGG--GAGAAA-CAC-TATGAATCACTG-GGAGG-AAATATTTCAACTG--------AAGCAAC-A-GCATCTTTTCGCGGT-AATTCCAACTC-ATTCTTCCCCCACTGGCCTGTTTGAAGGAGTCCACAACCAC-TGTCCACTTGCAATGAC-GGACCTAG---GTCGTGTCTTAAT------CGCAGAATGCCACTTCACTGTTTCAGAGGAAGGCACTGCTGCCCACTGAAAGGTGAAGATGAGAA--TGGTGGGAGAAATGGTTGGGTGATTTCTGTTTC-------AA-----------------GTCAGGTGTATCAGTGAGAAAC--AGCAG-----CATCTG--GT--GACTTGAG-CTTGA--C--CGAAG-A-TGTCAGA--GGAGAAAGTGGAATCAGAGCGAAGATGC-----TATGGAGT--G-GCTCCA-TATT--GTTGAAGGGCA----AGAGGTTGGTTATATAA-CC-------TGAG--GAAAAC--------ATGA--TTGA---------------TGCA-GCAAGA-TACATCT-TTGGATGTTGAAG-ATATT-GGAATTGTAGA-GAGAAAGGCCCAGGAATTTGGCAAGATTCTGAGAGCAGGCTCTGT-GTTGGG-TTGTG-TGTTGG-GATG-ACTTTT-GTG--GGATCTGG-AATTT-TGCTGGGAAGCAGACCGCTGTTGTATCCAATTGTTAA-TTGTTATCATGGGTCACAGTCTGGGAT---CAGGGGTGGAAGTGGAAGGC-TTGATT-GA-A-GGCCAA-TGTCT-CTGC
gi|20 : agaacacctTGGAGCACTGG-----------------GGC-----AGCAGCTGTGGGG--TAG--GC-AG--------ACGTTGGGAGAA-------ACctgggtaagggg
gi|3 : tgaattaggactaaccatctgtTGCTGTGAGACTT--GGCTGAA--CAAGGCGGAA-TGTCTGAAGG----AATCGGATCCTGAG-GACGG-AC-----TATGG-GTGGG-G-TCCA-TATTGGGTTGAGA---AGCAGAGAGGCTGGTTATATGATCCATATGGTTGAGCAG-AGGCTGGTTATTATGAGTCTGAGGAAACATGATTTGATGCATGCAA-ATTACACCT-TTGGACTTTGAAGCATATTGGGCATAGTAGATGAG-AAGGCCC-GGAATATGGC-AGATTCTGAGACT-GGCTCTGTAGTTGGGTTTGGGTTGCTGGTACTG-ACTTTTAGATTGGGGTCTGGAAATAACTGCTAGGAAA-GAG-CAATGCCGTATCC-ATTATC---TTCCA-------GTTA----CT-GGAT---------TGGA------------TG--T-GACA-GG-CAT-TACCTACCGCAA-GGACATTCT--GGAGCTGGCTGAAAATGGGATTCCTCTGCATTTGGTTGGAAGAACTGG-GTGGATTGACAGGCTTTCATGGTTGTT-TTGT-TGTGCT-TGG-CTGG-ATGT-GGTG-TTTGACTGG-CTGTTTGGAAAAGCGGGTGGCTGGAGG-GGAGAAGAT-TTCTGT--CCTGCACTT-GTATATCTGTGGATAA--TCTGGGAAACCTC-TGGCCAGTAGTCGCTGGGGCTGAA-CTTATTTTAGGGGTAAA-GTGCTGTAACTCTGAGTGGCAAAGC-A-TACTGCTGCTAGC-TG-TACACAAAAGCATCTGGATATGTTCTG-TAGAAACCT-GGGGTAACACTATCTGTT-GGA--T--G-GTCTGTTGAGGCGAAGG----TGTAAGAAAGTGTTG-TATTCC
gi|4 : tTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTC-----G---TACCA-A--T-GATTTAG--AATATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACATTTCCCTCTTCAT--TCTCTT---AAACTTAATTGGATGCTGGTTTC-C--AG-AGA--TAGACAGGGT-G---TTGAAA-CACCG-CACCCTTTTG-TTGGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGCAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAGTTG-TTAAGTACATTG----GTGAAGTCCATGCACATGAA-ATTCTTGCTTTCT--TCATCCTC-TATCTTTCTCTTAAGGGGATTGCTTTGT-TGAA-TTT-CGTTTGGTG-T-GTTAGCA--AA-TATTTCC-TCTCCTCT-AATAG-GACTG-TTGTCACTA----AGGC--TA-AAATGGGA-TGAGTTGATAGA-GT-T-GAAGGC-AGTTTC---------ATGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACT-G-----------------A-------AGCAG--G-------TGG--GC-AG--------ACGTTGGAAGAA-------ACGCTATGATCACTGGGG--GAGGCTG-TAGGCAACACA-GAAGCAGGTGGGC---CA-TTGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TCTGAT-GA---AAGCAC--A-GCATCTTCT-GCAGT-AATTCC-ACTC-ATT-------TACTGGCCTGATTGAGGATATCCAC-ACCAC-TGTCCACTTGCAATGAC-AG--CTTGTTAGTTG-AAGTTAAT------TGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCACTG-AAGCTG-AGATGAGAAC-TGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATTGATGAGAAATGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--TGAGAAAG-A-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGG-AA-A-TACACCTA-TGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTG-TTG-AATG-AGTTTT--GT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-A-TTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAA--GGAAGGC-TTGATT-GA-C-TG-CAA-T-CCT-CTGCcatgcattcatcagagaaggtgcctgccacaactgaagaacaaggagcttagacaagtgcaataccaatatttgatgtgtatgaagaagtttgttgtctcagaattctgagcacccaataatttcccataggaaaggatgctttcggtggtaaggttatgatataaaagaaggagcacttgactgagactcagtacataagtttataagcgcgctggtggtgggcatgctccaacattctgagactaactcagcatggccaaacttcctcgcatccacgctcttccccatcacgtagtgccagtaattttgcaatccatcgacagaacccagggtttactttgtgttttctaaaaaattagtcaggaaataatcacttcagaactagcactacacactatgataaacacacaatcggataataactttataagtggaaagagtgggaattaggtcactgtaattgtgtaatgattagtctttaatttggagtatgggacagcgagcaaaggt
gi|5 : AGTCT-GGAT---GA-GGGTGGAA--GGAAGGC-TTGA-TTGA-C-TG-CAA-T-CCT-CTGCAA-GGACATCCT--GGAGCTTGCTGTAAATGGGATTTCTCTGCATTTGGTT-AAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG-CTGGAATGT-AGTG-TTTGACTGGTCTG-TTGGGAAAGT-TATGGGTGGAGG-TGAGAAGGTATTC--T---CTCTATCT-GT-GATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCT-GTAGTT-TTGAGGC-G--------------GGT-AA-GTGCTGTACATCTGATTGGC--AGG-A-TACTGTTGCT-GCATG-TA--------CTTCT-GATCTGTACTA-GAGAAGGCC-T-GGTAAC----TATGTT-GGA--T--GTGTCTGTT--GCCAT-GA----TG-AAGAAA--CTTG-TCTTCCATTCT
gi|6 : AGTCT-GGAT---CA-GGGTGGAG--GGAAGGC-----------------AA-T-CCT-CTTCAA-GGACATCCT--GG------TTGTAAATGAAATTTCTCTGCATTTGGTT-GAATAACTGG-AAAAA--AGAAGGC-TTCATATTAGTT-TTGC-TGTTCTGTTG-CTGGAATGT-GGTG-CTTGACTTGTCTG-TTGTGAAAGT-GATGGCAGGAGA-TGAGAAGATATTC--T---CTCTATTTGGT-TACCTGTGGACAA--GCAGAGAGC-CTC-TGTCC-GTA---------GC-GAATCTC-TA-----GGT-AA-GTTCTGTACATC-----------AG-A-TGCTGATGCT-TCGTG-TA--------CTTCT-TATGTATTCTG-TAGAATTCC-C-TGTAAC----TCTGGG-GGAGGTAGGTGTCTGTT--GCCAC-GG----TG-AAgaagagcctgtacagtcgaacaacgagcttaagtctccaatatttgatttatgaagaatttttggagtctcaattcagcataaatgatgattttcaatgaaggatgctttgaattctgatttgatgatagcttgtacatggagctggcttcagtccagtatatatagctggtggtggacatgttctctattacctgagactctcgacttcatgccaacctcctcctcactcctctccatgccagccattgcaatccatcctcgacattgttttccttgtgcagtatatcaatatacatccagaaaaattgaattcatagtaatttctgacaattacacttatcaaattatgtttacagtgcagttcagctttaacagtgggaatgggacacctgtaattgggtaataatgattagattaattggataatggaggagcccaggtgt
gi|7 : AATTA-CA-A--AACAAGGCTTCATGTTCACCTT-AGTGCTTTCCTCATCCAACGTA-TGA-ACATTC-AAGGACAATGT--GGTTTCTTACGTGGCT-TCACTTCTTTGGATATCCATGTAGA--CCTCTGCTTTTCAAGA-G-CCACTTACACATGCT-GGCT-TA--CTGCTTTGG--AAC-TTTGGATTAAACGTAATTTC-GGACTT-TGTT-CTTC-TGTTTATGTCTTTTCA-CGA---CACC---TTTGCTC--GC--GC-CCAGACGTCTCACCTG--TTCAGTTTGG-CAGGCCGGT-TTCTAAT-T-CCTTCATATGCTCAT-CTTCTGTGATTCCTCGCTTTGTGGGGATGGAGTG-TTGTC---AG--TGGGATCTGCACCAGCTTTACCACA--TAGATTTAGCAAGTATC-CGAGAC-TT-TG-GGCCAT-GGCTGGAGA--GCACG-ACATTGTCCTCTCATTG--CTC-CGTTAAACTTAAGTTGATGCTGGTTTC-CCAAGCAGA--TAGA-AGGGT-G---TTGAAA-CACCGCCGCCTTTTTGTTTTG-C-ATGCCACTCTGTTCAC-TGTTTGC-GGTCAGTCTTGACAGCCacattccttgaagctgaggcctgttacagtatcactattgtttatgattacagaggtaaagtgaacaaacactcagcatcaggaattttgtacgtcctctaccatcgataggcttttgatgacttacttgggactaagctcactcagagagcaggatgagcaccagtcgaacagtatatatagcgtgtgttggtacaactctctattacctgagactctcaacttcatcctttgtccttctcatactccacccattagtgccagtaaatctgacacaatacctccacaagatgtcttctttagtgtattatgagcaaaattattagtcaatattataacttcaaacattaattacaacttatgtgcaggaatttgtttatataagatggccccatgttcagctttatagagtgacccgcggcaatcaaacacctcgttaagctacatgcgtgtagattaattgggatggagccaaggaattgg
gi|9 : CTATTGTTC-------TGTGAGG-TAGGG-G-TTGTC-CAGA--TGAG-TTTG-----G---TATCA-C--T-GATTTAG--AACATCG-GCGACATT-GGAGGCCATGGGCTGGAAA--GCA-G-ACGTATCCTTCTTAATGGTCTT-C---AA-TTTAATTGGATGCTGGTTTC-C--AG-TGA--TTGACAAAG--GTA-TTGAAACACCCG-CACC-TTTTGTT-GGCC-AT-C-ACT-TCTTCACTTGTTTGCGGGTCAGTCCTGATAGTCT-CACCAGCTCGT--CTACTTCGCCGCCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTGTTTAAGTACATTG----GT----TTCAT-C---------------CTCTCT---------------TTTCTCTTTGAGATATTGCTTTGTATGAA-TGTATGTCTGGTG------------------------------T-AATAG-GACTG-TTGTTGCT-----AGGC--T-------------AGTTGGTAGA-TT-T-GAATGC-AATTTC---------Agt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TATACAGTGGAACAAAGTGCTGAAGAAGGTCTCCAATGTTTGATGATGAAGGCTTCAGTTCACTATGCAGCAATTCTGGAAATGTCTTTGAATTCTTGTTGAGTGATAGTTATGGTAATGGGACAGAGCCATCCAGGACAGTATATATAGCTGGTGGTGGACATGTTCTCTATTACCTGAGACTCCTGTCATGCCAACCTCCTCCTCACTTCTCTCCATAGAGCCAGCAATGGCAGTTCCTAAGATTGTTTTGGTTGTGCAGTGTATCCAGTATGCATCCAGCTAAATTAAATTCCTAGTAATTTGTTACCATGACACTATCAAAACATGTATAGAGCAGGCCAGCTTGTACAGTTAGACTTCCATACCTATAATTGGGTAATGATTAGAGCCTGTTGACAATTGAGGAGCCCAGGTGAGA
Unaligned ( gi|21 ): GTGGGAATTAGGCACCTGTAATTGTGTAATGATTAGTTTAATTGGATAATGGAGGAGCAAAGGT
Alignments
lowQualScore : 111 22222 1 111 111 1 3333333 11 222 11 3333 1 1 1 2222 11 11 22 1 22 5555555555 222222 11 1 1 1 1 1 333333 222 1 111 1 1 1 1 1 222 11 1 222 222 4444444444444444444 11 11 1 11 111 22222 2222222 11 222222222 1111 2 11 22 111111 3333 1 11 1111 999999999999999999999999999999999999999999999 5555555555555555 11111 222222222 22222222 8888888888888888888888888888888888888888 22222222 2222222 11 11 22222222 1 1 1 3333333 1 1 222222 111 1 222222 1 1 1 1 1 1 1 11 1 333333 1111 222 1111 11111 22222222 2222222 11 22222222 555555555555555 222 2222 1 222222 111 111111 111 2222222222 111 11 1 11 2 1 222222 1 111 8888888888888888 22222222 222 1111 1111111 11 2222222 111 1
lowQualScore : 777 77777 0 1 0 1 777 3 000 0 1 1111111 0 33 7 66 1 3 333 6 0 88 0000 5 5 7 3 2222 33 7 33 7 1 55 7 7 6 3 00 1111111111 444444 33 3 7 2 3 3 7 1 3 6 999999 555 3 333 1 3 3 3 3 3 6 333 88 3 333 555 4444444444444444444 88 88 7 6 2 33 444 55555 2 6 6666666 8 8 8 8 11 8 444444444 4444 8 8 8 3 3 8 88 0 0 11 8 8 1 0 00 999999 0 6 99 77 99 0 6 3333 7 3 6 5 9 2 6 6 2 6 3 1 2 1 8 11 66 5 8 0 8 8 5 7777 333333333333333333333333333333333333333333333 3 1 1 6 6 6 1 9999999999999999 6 6 5 6 55555 99 6 5 6 6 6 6 666666666 6 11111111 0 8 1 1111111111111111111111111111111111111111 99 6 44444444 1111111 1 55 8 8 0 0 44 8 11 8 8 8 8 8 8 8 0 66666666 88888 8 4 0 9 0 2222222 1 2 0 0 0 0 222222 777 0 888888 0 3 0 0 0 0 2 0 0 22 0 3 0 2 2 2 0 2 111111 1 99 6 0000 111 99 4444 6 66666 6 99 6 6 6 99 22222222 0 0 6666666 11 8 99999999 88 000000000000000 000 8 8 2222 5 0 8 8 8 8 1 0 0 8 0 3 0 8 8 333333 8 8 8 8 666 3 1 5 444444 111 3 77 2222222222 5 111 5 8 11 0 3 6 8 11 0 8 0 8 8 8 0 8 0 0 0 0 0 77 1 6 111111 1 6 77 99 3 6 6 111 4444444444444444 6 6 2 99 8 8 8 8 3 8 99999999 8 1 88 1 666 7777 8 3333333 11 7777777 8 444 0
lowQualScore : ... ..... . . . . ... . ... . . ....... . .. . .. . . ... . . .. .... . . . . .... .. . .. . . .. . . . . .. .......... ...... .. . . . . . . . . . ...... ... . ... . . . . . . . ... .. . ... ... ................... .. .. . . . .. ... ..... . . ....... . . . . .. . ......... .... . . . . . . .. . . .. . . . . .. ...... . . .. .. .. . . .... . . . . . . . . . . . . . . . .. .. . . . . . . .... ............................................. . . . . . . . ................ . . . . ..... .. . . . . . . ......... . ........ . . . ........................................ .. . ........ ....... . .. . . . . .. . .. . . . . . . . . ........ ..... . . . . . ....... . . . . . . ...... ... . ...... . . . . . . . . . .. . . . . . . . . ...... . .. . .... ... .. .... . ..... . .. . . . .. ........ . . ....... .. . ........ .. ............... ... . . .... . . . . . . . . . . . . . . . ...... . . . . ... . . . ...... ... . .. .......... . ... . . .. . . . . .. . . . . . . . . . . . . . .. . . ...... . . .. .. . . . ... ................ . . . .. . . . . . . ........ . . .. . ... .... . ....... .. ....... . ... .
lowQualScore : 555 22222 2 0 0 0 555 2 222 0 0 5555555 8 88 0 55 0 2 333 7 7 33 0000 5 5 3 3 7777 33 3 33 3 0 33 3 3 7 3 00 3333333333 777777 33 3 3 0 3 3 3 0 3 7 333333 000 3 777 0 3 3 3 3 3 7 333 33 3 333 777 7777777777777777777 33 33 3 7 0 88 000 00000 5 5 0000000 0 0 0 0 00 0 000000000 8888 0 0 0 4 8 0 66 8 8 00 0 0 4 6 00 222222 8 7 22 77 22 3 7 0000 7 2 7 2 8 5 7 7 5 7 2 0 5 0 0 00 22 0 0 8 0 0 6 0000 333333333333333333333333333333333333333333333 2 0 0 7 7 7 0 5555555555555555 7 7 7 7 88888 22 7 7 7 7 7 7 777777777 4 22222222 8 0 0 3333333333333333333333333333333333333333 22 7 22222222 7777777 4 88 0 0 8 8 66 0 00 0 0 0 0 0 0 0 8 88888888 66666 0 2 0 0 0 5555555 0 5 2 8 0 0 888888 555 0 888888 0 2 0 0 0 0 0 0 0 55 0 2 2 5 5 5 2 0 000000 0 22 7 8888 333 22 2222 7 77777 7 22 7 7 7 22 00000000 8 8 0000000 00 0 00000000 88 000000000000000 000 0 0 8888 6 6 0 0 0 0 4 8 8 0 8 6 6 0 0 000000 0 0 0 0 888 2 7 7 444444 999 6 11 4444444444 7 666 7 0 00 8 8 0 0 00 8 0 6 0 0 0 8 0 4 8 8 6 8 33 0 7 222222 7 7 77 22 3 7 7 777 5555555555555555 7 7 5 22 0 0 2 0 8 0 00000000 0 4 66 0 888 0000 0 8888888 00 0000000 0 000 0
consensus : ACCCAAAAGTGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATNCTATACTTAGAATTAGTTTT-ATCTTGCTCNTTG---ATAAGTTCTATTACATT-AA-TGGTATGCAGNAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGNAATATGAGTATA---TACAACGATGCATGGTTT--GATG---GCAGTCAAACAAGAAAATTA-CA-A--AACAAGGCTCAATGTTCACCTTAANTG-TCTCCTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGTCT--------GCC-T--CCTCTTTGGACATCCTTG-AGAACTCTCTGCCTTTT-AGA-GACCANTTCCACATGCT-GGCTGTA--C--CTGGGG--AAC-TTTGGATTAAANGTAA-TTC-GGA-TT-TGTT-CTTCGTGT---TG--TTTTCA-CGA---CACCT--TTTGC-C--GCCAGC-C---GCGCCTCACCTG--TTCAG--TGGTCAGGCCGGTCTTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTG-----G---TACCA-A--T-GATTTA-G-AA-TATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACGTTTCCCTCTTAATGGTCTC-C---AAACTTAATTGGATGCTGGTTTC-C--AG-NGA--TAGACAGGGT-GT--TTGAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTG-TTAAGTACATTG----GT----TCCATGCACATGAA-ATTCTTGCTCTCT--T-ATC--C-TATCTTTCTCTTGAGGGNATTGCTTTGT-TGAA-TTT-CGTCTGGTG-T-GTTA-CA--AA-TATTTCC-TCTCCTCT-AATAG-GACTG-TTGTCACTA----AGGC--TA-AAATGGGA-TGAGTTGATAGA-GT-T-GAAGGC-AGTTTC---------ACGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGG-----------------A-------AGCAG--GT------TGG--GC-AG--------ACGTTGGGAGAA-------ACGCTATGATCACTGGGG--GAGGCTG-TAGGCAACACA-GAAGCAGGTGGGCAGGCA-TCGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TCTG-T-GA---AAGCANCAA-GCATCTTCT-GCGGT-AATTCCGACTC-ATT-------CACTGGCCTGNTTGAGGATGTCCAC-ACCAC-TGTCCACTTGCAATGAC-GG--CTTG---GTTG-GAGTTAAT------CGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCGCTG-AAGCTG-AGATGAGAAC-TGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATCGGTGAGAAACGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--CGAGGAAGAA-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGGCAA-A-TACACCTATTGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATG-AGTTTT-GGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-A-TTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--GGAAGGC-TTGA-T-GA-A-NG-CAA-T-CCT-CTGCAA-GGACATCCT--GGAGCTNGCTGTAAATGGGATTTCTCTGCATTTGGTT-GAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG-CTGGAATGT-GGTGTTTTGACTGGTCTGTTTGGGAAAGC-GATGGNTGGAGG-TGAGAAGGTATTC--T--CCTCTATCT-GT-NATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCC-GTAGTTGTTGAGGC-GAA-CTT-T------GGT-AA-GTGCTGTACATCTGAGTGGC--AGG-A-TACTGCTGCT-GCATG-TA--------CTTCT-GATCTGTACTG-TAGAAGNCC-TGGGTAAC----TCTGTT-GGA--T--GTGTCTGTT--GCCGTAGG----TG-AAGAAA--CTTG-TCTTCCATTCT
Reference ( family-6572 ) : ACCCAAAAGTGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATNCTATACTTAGAATTAGTTTT-ATCTTGCTCNTTG---ATAAGTTCTATTACATT-AA-TGGTATGCAGNAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGNAATATGAGTATA---TACAACGATGCATGGTTT--GATG---GCAGTCAAACAAGAAAATTA-CA-A--AACAAGGCTCAATGTTCACCTTAANTG-TCTCCTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGTCT--------GCC-T--CCTCTTTGGACATCCTTG-AGAACTCTCTGCCTTTT-AGA-GACCANTTCCACATGCT-GGCTGTA--C--CTGGGG--AAC-TTTGGATTAAANGTAA-TTC-GGA-TT-TGTT-CTTCGTGT---TG--TTTTCA-CGA---CACCT--TTTGC-C--GCCAGC-C---GCGCCTCACCTG--TTCAG--TGGTCAGGCCGGTCTTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTG-----G---TACCA-A--T-GATTTA-G-AAATATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACGTTTCCCTCTTAATGGTCTC-C---AAACTTAATTGGATGCTGGTTTC-C--AG-NGA--TAGACAGGGT-GT--TTGAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTG-TTAAGTACATTG----GT----TCCATGCACATGAA-ATTCTTGCTCTCT--T-ATC--C-TATCTTTCTCTTGAGGGNATTGCTTTGT-TGAA-TTT-CGTCTGGTG-T-GTTA-CA--AA-TATTTCC-TCTCCTCT-AATAG-GACTG-TTGTCACTA----AGGC--TA-AAATGGGA-TGAGTTGATAGA-GT-T-GAAGGC-AGTTTC---------ACGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGG-----------------A-------AGCAG--GT------TGG--GC-AG--------ACGTTGGGAGAA-------ACGCTATGATCACTGGGG--GAGGCTG-TAGGCAACACA-GAAGCAGGTGGGCAGGCA-TCGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TCTG-T-GA---AAGCANCAA-GCATCTTCT-GCGGT-AATTCCGACTC-ATT-------CACTGGCCTGNTTGAGGATGTCCAC-ACCAC-TGTCCACTTGCAATGAC-GG--CTTG---GTTG-GAGTTAAT------CGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCGCTG-AAGCTG-AGATGAGAAC-TGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATCGGTGAGAAACGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--CGAGGAAGAA-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGGCAA-A-TACACCTATTGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATG-AGTTTT-GGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-A-TTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--GGAAGGC-TTGA-T-GA-A-NG-CAA-T-CCT-CTGCAA-GGACATCCT--GGAGCTNGCTGTAAATGGGATTTCTCTGCATTTGGTT-GAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG-CTGGAATGT-GGTGTTTTGACTGGTCTGTTTGGGAAAGC-GATGGNTGGAGG-TGAGAAGGTATTC--T--CCTCTATCT-GT-NATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCC-GTAGTTGTTGAGGC-GAA-CTT-T------GGT-AA-GTGCTGTACATCTGAGTGGC--AGG-A-TACTGCTGCT-GCATG-TA--------CTTCT-GATCTGTACTG-TAGAAGNCC-TGGGTAAC----TCTGTT-GGA--T--GTGTCTGTT--GCCGTAGG----TG-AAGAAA--CTTG-TCTTCCATTCT
gi|1 : ACCCAAAAATGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATGTTATACTTAGAATTAGTTTT-ATCTTGCTCTTTGGTAATAAGTTCTATTATATT-AAATGGTATGACGTAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGTAATATGAGTATA---TA--ATGATGCATGGTTT--GATG----CAGTCAA-CA-GAAAA--A-CACA--AACAAG-CTCAATGTTCAC-TTAATTA-TC--CTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGT-T--------GCC-T--C-TCTTTG-ACATCCTTG-AGAACTCTCTGC-TTTT-AGA-GACCATTTCCACATGCT-GGCTGT---C--CTGGG---AAC-TTTGGAT--AAAGTAA-TTC-GGA-TT-TGTTTCTTCGTGT---TG--TTTTCA-CGA---CACCT--TTTGC-C--GCCAGCACA--GCGCTTCACCTG--TTCAG--TGGTCAGGCCGGTTTTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-GGTTGTC-CAGG--TGGG-TCTC-----G---TACCA-A--T-GATTTA-G-AA-TATCACGAGAC-TT-TGAGGCC-TGGCTTGGAGA--GCA-G-ACATTTCCCTCTTCAT--TCTC-T---ATACTTAATTGGATGCTGGTTTC-C--AG-AGA--TAGACAGGGT-GT----GAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGG-TCAGTCCTGACAGCCT-CACCAGCTCGT--CTAC--CGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAGTTG-TTAAGTACATTGTGAAGT----TCCATGCACATGAA-ATTCTTGCTTTCT--TCATC--CCTATCTTTCTCTTAAGGGGATTGCTTTGT-TGAAATTT-CGTTTGGTG-T-GTTAGCA--AAATATTTCC-TCTCCTCT-AATAG-GACTGTTTGTCACTA----AGGC--TA-AAATGGGA-TGAG-TGATAGA-GT-T-GAAGGC-AGTTTC---------ATGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGG-----------------A-------AGCAG--GT------TGG--GC-AG--------ACGTTGGAAGAA-------ACGCTATGATCACTGGGG--GAGGCTGTTAGGCAACACA-GAAGCAGGTGGGCAGACA-TTGG--GAGAAA-CAC-TATG-ATCACTG-GG-GA-ACATATTTT-TCTG-T-GA---AAGCATCAA-GCATCCTCT-GCAGTAAATTCC-ACTCAATT-------TACTGGCCTGATT-AGGATATCCAC-ACCACTTGTCCACTTGCAATGACAGG--CTTG---GTTG-AAGTTAAT------TGCAGGAT-CCAC-TC-CTG-TTCAGAGG-AGGCACTGCTG-CCACTG-AAGCTG-AGATGAGAACTTGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATTGATGAGAAATGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--TGAGAAAG-A-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AA--GCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAG--AA-A-TACACC-AT--GACTTTGAAGCATATTGGG-ATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATGAAGTTTT-GGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-ATTTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--AGGAGGC-TTGA-T-GA-ACTG-CAATT-CCT-CTGCAAGGGACATCCT--GGAGCTTGCTGTAAATGGGATTTCTCTGCATTTGGTT-AAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG--TGGAATGTAAGTGTTTTGACTGGTCTGTTTGGGAAAGT-TATGGGTGGAGGTTGAGAAGGTATTC--T--CCTCTATCT-GT-GATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCT-GTAGTTTTTGAGGC----------------GGT-AA-GTGCTGTACATCTGATTGGC--AGG-A-TACTG-TGCT-GCATGTTA--------CTTCT-GATCTGTACTA-GAGAAGGCC-T-GGTAAC----TATGTT-GGA--T--GTGT-TGTT--GCCAT-GA----TG-AAGAAA--CTTG-TCTTCCATTCT
gi|10 : TGGTCT-GGGTCCAGA-GGGTGAAG--GG----CGTTGA-TTGA-A-GG-CAA-G-TCC-CTGCAA-G-ACATCCCTGGGAGCTGGCTGTAATTTGGATTGCTCTGCATTTGGTTTGAAGAACTGGGAAGGG--GGA--GC-TTAGTGGCTGTTCTTGTATGTTCTGTGGACTGGAATGT-GGTGTTT-GGCTGCTCTGTT-GGGAAAGT-GATGGGTGGAGG-TGAGAAGGTATTC--C--TCTCTATCT-GT-GATCTGTGGGTAAAGACAGGGAAAGCTCTTGTCC--TAGATGTTGAGGC-------T-T------GGT-AACGTGCTGTACATCTGAGTGGC--AGGCATTACTGCTGCT-GCATG-TA--------CCT-T-GATCTGTACTGTTAGAAGTCTGTGGGGAAC----TCTGTTGGGA--T---TGCCAACT--GCTGTAAGGCCTTG-AAGAAA--TTTGATCTTCCATTCTccag
gi|11 : A-TGAATCCGTAAA-GT-T-GAAGGC-AGTCTC---------ACATTGAGT--T---A-TATCCAGC-CCCTGAAACACTGGAGCTGAAGCTGTAGGGTA-------GGCAG--G-------TGG--GC-AG--------ATGTCGGGAGAA-------ACACCGTAATCACTGGGG--G
gi|11 : CACTGGAGCTGAAGCTG-TAGG----GTA-G--GCAGGTGGGCAGATG-TCGG--GAGAAA-CAC-CGTA-ATCACTG-GG-GGGAGATATCGC-TTTG-AAGA---AAGCTGCAA--CATCTTCT-GCTGT-AATTTCGAATA-AGT-------CACTTTCCTGTTTGATGCTGTCCAC-ACCAC-TGTCCACTTGCAATGG-------TTG---ACTG-GAGCCAATGAAATTCACAGAAT-CCTTTTC-CTG-TTCAGAGG-AGGCACTGCTA-CTGCTA-CTGCTG-CGAGGAGAAC-TGGAGGGGGAAATGATT-TGTGATCTCTGTTGCTGTGATAAAGCAGTGATGACATTCAAGTCCGGTGTATTGGGGAGAACCGGAGCA------TGTTTGgagatatcgctttgaagaaagctgcaacatcttctgctgtaatttcgaataagtcactttcctgtttgatgctgtccacaccactgtccacttgcaatggttgactggagccaatgaaattcacagaatccttttcctgttcagaggaggcactgctactgctactgctgcgaggagaactggagggggaaatgatttgtgatctctgttgctgtgataaagcagtgatgacattcaagtccggtgtattggggagaaccggagcatgtttg
gi|12 : atgaatccgtaaagttgaaggcagtctcacattgagttatatccagcccctgaaaCTGCTGTGAGACTC--G-CTGGA--TGAGAAAGA--TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGG-AA-A-TACACCTA-TGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTG-TTG-AATG-AGTTTT--GT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-A-TTGTAGTCGTGGGTTAT
gi|13 : TAGCGACTG-TTGTCACTATCCTAG-C--TA-AAAGGGGA-TGAGTGAATAGATGTCT-GAAGGCGAGTTTCCCTCGTTTAACAT-GAGTCTG---G-A-TCTGAC-TCGTGAA-CACTG------------------A-------AGCAG--GT------GGA--GCGAG--------ACGTTGGAAGAATCAAATCGCTCTATGTTCACTGGGGT-GAGGCTG-TAGGCAACACA-GAAGCA-GT-GGCAGG-A-TCAGTTAAGAAACCACTTATG-ATCACTGAGG-GG-ACATATTTC-TC-A-T-GATCGAAGCGTCAGTGCATCTTCT-
gi|14 : TAATTGGATTACGGTT-C-C--AG-TGA--TGGACAGTGTTGTAGCTGAAATC-------------TGCTTGGGC-CT-CAACT-TGTT-------TTGCAATTCAGTC-----------CA--AG---------A----GTTGTCAGTGG--T-GTGG-TAC-AGACGTGGGGCGGGCA-CCAATTG-TTCAGTACATTG----GT------------CA-GAATATCCATCCT---------TC--C-AATCTTTCTCGTGAGGGATTTACTTTGC-TGAA-CTT-CCCCTGGTGTT-GTAA-CA--AG-CATTTCCTTCTCCTCTGAATGG-Gtgcag
gi|15 : atgAAAGTGGAATGAAATGAAAGGAAAATTAAAAAAATCCAAGAAACGACATTCAACATTTAGAATTACTTTTTATCTTACTTGTTG---ATAAATTCTTTTACA---AA-TGAGATGCAAAAATTCAGTATGAT------ACATGAGCACTGATTTGATTGTA--ATGAATTA-GAAATATGAGTATA---TACAATAATACATGGTTT--GATGCATGCAG
gi|16 : ACCCAAAAATGGAATGAAA---GAGGAA-G---AAATAACCGAAGAAGCATTATGTTATACTTAGAATTAGTTTT-ATCTTGCTCTTTG---GTAAGTTCTATTATATTAAA-TGGTATGCAGTAAATAAGTATGATAATGATATATGATCAATGATTTCAATATATGATAAAAT-AGTAAT-TGAGTAatagaaca
gi|17 : aaaacGTTCTCTAAT-ATT--C-TTTCTT-CTCTTGAGGATAT-ACTCT-C-TGCC-TTC-CACC-GGTG-TTGTT--CATTGA-TATTTCC-TCTCCTCT-AATAG-GA-TG-TAGTCACCA----AGGCTGTA-AATTGAGATTTAGTTGAT
gi|18 : ttagtccaggcccatgaaaagttgttctgtttcttgattccggaGAAAGC-GGTGGCTGGAGG-GGAGAAGATATTC--TGTCCTC---CT-GT-TATCTGTGGATAA--GCTGGGAAA-CTC-TGGCC-GTAG-TGCTGGGGCTGAA-CTT-TTG----GGT-AA-GTGCTGTACATCTGAGTGGC--tca
gi|19 : GGAGCAAGAGATTGTTTGCTGTAAGACCC--A-ATGGAAACAAGGGAGAACTGTCGAA--G----GAATGGATCCTGAG-GATGGTACTCGCATGTGG-GT--GAG-TCCAGTATT--ATTG
gi|2 : AAGTGGAATTTAA---GGGGAAA-----AATAACCAAAGAAGAATTATCCTATACTTAAAATTAGTTTT-ATCTTGCTCATTG---ATAAGTTCTA--ACTTT-AA-TGATGTGCAGGAAATAAGTATGA------TATATGACCAATGATTTCATTATG--AT-AAATAAGGAATATGAGTATAAGGTACAACGATGCATGGTTTTGGATG---GCAGTCAAACAAGAAAATTACCA-ACCAACAA-GTTCAATG-TCA-CTTAAAT--TCTCCTCTTCCAACATGTTGAGACATTCTAAGGGCATCATCTAGTCT--------GCCTT--CCTCTTT-GACATCCTTG-AGAACTCTCTGCCTTTT-AGAGGACCTATTCCACATGCTAGGCTGTAACT--CTGGGGACAACTTTTGG--TAAAGATAA-TTCGGGA-TTATGTT-CTTCGTGG---TG--TTGGCACCGACTTCATCTTATTTGCACAAGCCAGC-C---G---CTCACCTGCTTCCAG--TGGTCAAACC-GTCTTC--ATGCGCC-----AA-CTCTTTTTTCTGCTCTTC-------AGTAGGG-TATGG-G-TTTTCGCAAGATTTGC-TTTG-----G---TACCA-ACTT-GCTTTAGG-AAATAT-ACAACAT-TTGGGAGGCCATGGGCTGGAAAAGGCA-GAACGTATCCTTATTAATGGTCTT-C----AATTTAATTGGATGCTGGTTTCGC--TG-TGACTTGGACAGGGT-A---TTGAAA-CACCG-CACTCTTTTG-TTGGCCAAT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCTCCACCAGCTCGTGCCTACTTCGGTGTCGGTGGGATAATGGGTACTGGGTGTGGCTCTGGTATCCAATTG-TT-AGTACATTG----GT----CTCAT-C---------------CTCTCT--T------------TTTCTC-TGA-GGTATTGCTTGGT-TGGA-TGT-CCTCTGGTG------------------------------T-AATAG-GACTG--AGTCACTG----TGGC--TATAAATGGGG-TGAATTGATAAA-GT-TGGAAGGC-AATTTC---------ATGTTGAGC--GTAAGTAATCGAACATGGTGAAGCACTGG-----------------GGCTGGATAGCTGTAGTGCAACATAGAAGC-AGGTGGGCAGACTTTGGGAGAA-------ACACTATGATCACTGGGG--AAAGCTG-TAGGCAACACACGAAGCAGGTGGGCAGGCACTTGG--GAGAAA-CAC-TATGAATCACTG-GGAGG-AAATATTTCAACTG--------AAGCAAC-A-GCATCTTTTCGCGGT-AATTCCAACTC-ATTCTTCCCCCACTGGCCTGTTTGAAGGAGTCCACAACCAC-TGTCCACTTGCAATGAC-GGACCTAG---GTCGTGTCTTAAT------CGCAGAATGCCACTTCACTGTTTCAGAGGAAGGCACTGCTGCCCACTGAAAGGTGAAGATGAGAA--TGGTGGGAGAAATGGTTGGGTGATTTCTGTTTC-------AA-----------------GTCAGGTGTATCAGTGAGAAAC--AGCAG-----CATCTG--GT--GACTTGAG-CTTGA--C--CGAAG-A-TGTCAGA--GGAGAAAGTGGAATCAGAGCGAAGATGC-----TATGGAGT--G-GCTCCA-TATT--GTTGAAGGGCA----AGAGGTTGGTTATATAA-CC-------TGAG--GAAAAC--------ATGA--TTGA---------------TGCA-GCAAGA-TACATCT-TTGGATGTTGAAG-ATATT-GGAATTGTAGA-GAGAAAGGCCCAGGAATTTGGCAAGATTCTGAGAGCAGGCTCTGT-GTTGGG-TTGTG-TGTTGG-GATG-ACTTTT-GTG--GGATCTGG-AATTT-TGCTGGGAAGCAGACCGCTGTTGTATCCAATTGTTAA-TTGTTATCATGGGTCACAGTCTGGGAT---CAGGGGTGGAAGTGGAAGGC-TTGATT-GA-A-GGCCAA-TGTCT-CTGC
gi|20 : agaacacctTGGAGCACTGG-----------------GGC-----AGCAGCTGTGGGG--TAG--GC-AG--------ACGTTGGGAGAA-------ACctgggtaagggg
gi|3 : tgaattaggactaaccatctgtTGCTGTGAGACTT--GGCTGAA--CAAGGCGGAA-TGTCTGAAGG----AATCGGATCCTGAG-GACGG-AC-----TATGG-GTGGG-G-TCCA-TATTGGGTTGAGA---AGCAGAGAGGCTGGTTATATGATCCATATGGTTGAGCAG-AGGCTGGTTATTATGAGTCTGAGGAAACATGATTTGATGCATGCAA-ATTACACCT-TTGGACTTTGAAGCATATTGGGCATAGTAGATGAG-AAGGCCC-GGAATATGGC-AGATTCTGAGACT-GGCTCTGTAGTTGGGTTTGGGTTGCTGGTACTG-ACTTTTAGATTGGGGTCTGGAAATAACTGCTAGGAAA-GAG-CAATGCCGTATCC-ATTATC---TTCCA-------GTTA----CT-GGAT---------TGGA------------TG--T-GACA-GG-CAT-TACCTACCGCAA-GGACATTCT--GGAGCTGGCTGAAAATGGGATTCCTCTGCATTTGGTTGGAAGAACTGG-GTGGATTGACAGGCTTTCATGGTTGTT-TTGT-TGTGCT-TGG-CTGG-ATGT-GGTG-TTTGACTGG-CTGTTTGGAAAAGCGGGTGGCTGGAGG-GGAGAAGAT-TTCTGT--CCTGCACTT-GTATATCTGTGGATAA--TCTGGGAAACCTC-TGGCCAGTAGTCGCTGGGGCTGAA-CTTATTTTAGGGGTAAA-GTGCTGTAACTCTGAGTGGCAAAGC-A-TACTGCTGCTAGC-TG-TACACAAAAGCATCTGGATATGTTCTG-TAGAAACCT-GGGGTAACACTATCTGTT-GGA--T--G-GTCTGTTGAGGCGAAGG----TGTAAGAAAGTGTTG-TATTCC
gi|4 : tTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTC-----G---TACCA-A--T-GATTTA-G-AA-TATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACATTTCCCTCTTCAT--TCTCTT---AAACTTAATTGGATGCTGGTTTC-C--AG-AGA--TAGACAGGGT-G---TTGAAA-CACCG-CACCCTTTTG-TTGGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGCAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAGTTG-TTAAGTACATTG----GTGAAGTCCATGCACATGAA-ATTCTTGCTTTCT--TCATCCTC-TATCTTTCTCTTAAGGGGATTGCTTTGT-TGAA-TTT-CGTTTGGTG-T-GTTAGCA--AA-TATTTCC-TCTCCTCT-AATAG-GACTG-TTGTCACTA----AGGC--TA-AAATGGGA-TGAGTTGATAGA-GT-T-GAAGGC-AGTTTC---------ATGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACT-G-----------------A-------AGCAG--G-------TGG--GC-AG--------ACGTTGGAAGAA-------ACGCTATGATCACTGGGG--GAGGCTG-TAGGCAACACA-GAAGCAGGTGGGC---CA-TTGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TCTGAT-GA---AAGCAC--A-GCATCTTCT-GCAGT-AATTCC-ACTC-ATT-------TACTGGCCTGATTGAGGATATCCAC-ACCAC-TGTCCACTTGCAATGAC-AG--CTTGTTAGTTG-AAGTTAAT------TGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCACTG-AAGCTG-AGATGAGAAC-TGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATTGATGAGAAATGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--TGAGAAAG-A-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGG-AA-A-TACACCTA-TGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTG-TTG-AATG-AGTTTT--GT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-A-TTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAA--GGAAGGC-TTGATT-GA-C-TG-CAA-T-CCT-CTGCcatgcattcatcagagaaggtgcctgccacaactgaagaacaaggagcttagacaagtgcaataccaatatttgatgtgtatgaagaagtttgttgtctcagaattctgagcacccaataatttcccataggaaaggatgctttcggtggtaaggttatgatataaaagaaggagcacttgactgagactcagtacataagtttataagcgcgctggtggtgggcatgctccaacattctgagactaactcagcatggccaaacttcctcgcatccacgctcttccccatcacgtagtgccagtaattttgcaatccatcgacagaacccagggtttactttgtgttttctaaaaaattagtcaggaaataatcacttcagaactagcactacacactatgataaacacacaatcggataataactttataagtggaaagagtgggaattaggtcactgtaattgtgtaatgattagtctttaatttggagtatgggacagcgagcaaaggt
gi|5 : AGTCT-GGAT---GA-GGGTGGAA--GGAAGGC-TTGA-TTGA-C-TG-CAA-T-CCT-CTGCAA-GGACATCCT--GGAGCTTGCTGTAAATGGGATTTCTCTGCATTTGGTT-AAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG-CTGGAATGT-AGTG-TTTGACTGGTCTG-TTGGGAAAGT-TATGGGTGGAGG-TGAGAAGGTATTC--T---CTCTATCT-GT-GATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCT-GTAGTT-TTGAGGC-G--------------GGT-AA-GTGCTGTACATCTGATTGGC--AGG-A-TACTGTTGCT-GCATG-TA--------CTTCT-GATCTGTACTA-GAGAAGGCC-T-GGTAAC----TATGTT-GGA--T--GTGTCTGTT--GCCAT-GA----TG-AAGAAA--CTTG-TCTTCCATTCT
gi|6 : AGTCT-GGAT---CA-GGGTGGAG--GGAAGGC-----------------AA-T-CCT-CTTCAA-GGACATCCT--GG------TTGTAAATGAAATTTCTCTGCATTTGGTT-GAATAACTGG-AAAAA--AGAAGGC-TTCATATTAGTT-TTGC-TGTTCTGTTG-CTGGAATGT-GGTG-CTTGACTTGTCTG-TTGTGAAAGT-GATGGCAGGAGA-TGAGAAGATATTC--T---CTCTATTTGGT-TACCTGTGGACAA--GCAGAGAGC-CTC-TGTCC-GTA---------GC-GAATCTC-TA-----GGT-AA-GTTCTGTACATC-----------AG-A-TGCTGATGCT-TCGTG-TA--------CTTCT-TATGTATTCTG-TAGAATTCC-C-TGTAAC----TCTGGG-GGAGGTAGGTGTCTGTT--GCCAC-GG----TG-AAgaagagcctgtacagtcgaacaacgagcttaagtctccaatatttgatttatgaagaatttttggagtctcaattcagcataaatgatgattttcaatgaaggatgctttgaattctgatttgatgatagcttgtacatggagctggcttcagtccagtatatatagctggtggtggacatgttctctattacctgagactctcgacttcatgccaacctcctcctcactcctctccatgccagccattgcaatccatcctcgacattgttttccttgtgcagtatatcaatatacatccagaaaaattgaattcatagtaatttctgacaattacacttatcaaattatgtttacagtgcagttcagctttaacagtgggaatgggacacctgtaattgggtaataatgattagattaattggataatggaggagcccaggtgt
gi|7 : AATTA-CA-A--AACAAGGCTTCATGTTCACCTT-AGTGCTTTCCTCATCCAACGTA-TGA-ACATTC-AAGGACAATGT--GGTTTCTTACGTGGCT-TCACTTCTTTGGATATCCATGTAGA--CCTCTGCTTTTCAAGA-G-CCACTTACACATGCT-GGCT-TA--CTGCTTTGG--AAC-TTTGGATTAAACGTAATTTC-GGACTT-TGTT-CTTC-TGTTTATGTCTTTTCA-CGA---CACC---TTTGCTC--GC--GC-CCAGACGTCTCACCTG--TTCAGTTTGG-CAGGCCGGT-TTCTAAT-T-CCTTCATATGCTCAT-CTTCTGTGATTCCTCGCTTTGTGGGGATGGAGTG-TTGTC---AG--TGGGATCTGCACCAGCTTTACCACA--TAGATTTA-GCAAGTATC-CGAGAC-TT-TG-GGCCAT-GGCTGGAGA--GCACG-ACATTGTCCTCTCATTG--CTC-CGTTAAACTTAAGTTGATGCTGGTTTC-CCAAGCAGA--TAGA-AGGGT-G---TTGAAA-CACCGCCGCCTTTTTGTTTTG-C-ATGCCACTCTGTTCAC-TGTTTGC-GGTCAGTCTTGACAGCCacattccttgaagctgaggcctgttacagtatcactattgtttatgattacagaggtaaagtgaacaaacactcagcatcaggaattttgtacgtcctctaccatcgataggcttttgatgacttacttgggactaagctcactcagagagcaggatgagcaccagtcgaacagtatatatagcgtgtgttggtacaactctctattacctgagactctcaacttcatcctttgtccttctcatactccacccattagtgccagtaaatctgacacaatacctccacaagatgtcttctttagtgtattatgagcaaaattattagtcaatattataacttcaaacattaattacaacttatgtgcaggaatttgtttatataagatggccccatgttcagctttatagagtgacccgcggcaatcaaacacctcgttaagctacatgcgtgtagattaattgggatggagccaaggaattgg
gi|9 : CTATTGTTC-------TGTGAGG-TAGGG-G-TTGTC-CAGA--TGAG-TTTG-----G---TATCA-C--T-GATTTA-G-AA-CATCG-GCGACATT-GGAGGCCATGGGCTGGAAA--GCA-G-ACGTATCCTTCTTAATGGTCTT-C---AA-TTTAATTGGATGCTGGTTTC-C--AG-TGA--TTGACAAAG--GTA-TTGAAACACCCG-CACC-TTTTGTT-GGCC-AT-C-ACT-TCTTCACTTGTTTGCGGGTCAGTCCTGATAGTCT-CACCAGCTCGT--CTACTTCGCCGCCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTGTTTAAGTACATTG----GT----TTCAT-C---------------CTCTCT---------------TTTCTCTTTGAGATATTGCTTTGTATGAA-TGTATGTCTGGTG------------------------------T-AATAG-GACTG-TTGTTGCT-----AGGC--T-------------AGTTGGTAGA-TT-T-GAATGC-AATTTC---------Agt
blockSeqs : TGA AATTA T T G . T TTA . A TAATGAT TG G AA A A AGG C TG CATG A A T C ACC GG T CC A A GC T T G T CT TTCTTACGTG TCACT GG T A C A G A A A G AACT GAC T ATT G T G C A . G TTA TC C CTT TTA TCGCGCCCAGACGT CT TT T G C TA GCG TTCAT G T CTCGCTT A T . G AT A CACCAGCTT ACT A G C A A A GG AG C A A GG CGTTA G CA CA CT T TAGC T A C C C G A G A C T A T C C GC TT G A T T C . GAAGTCCATGCACATGAAATTCTTGCTTTCTTCATCCTCTA G G A A . A C TTGTTCATTGAT T G C . ATCCT TG T T T C G G CCTCGTTTA T GTAAGT A A AGCTGAAGCTGTAGGGTAGGCAGG AA G GTGGGCAG TCAAATC A CT . C AT C TT C T A A A G A TGATCG TCAGT C T . G . CTTCCCC T G A . CGGAC TTA T GAAATT G T A T A C G A A C G T G G A T AGAGAT G GA G AACA AAC AG GAGA C TCGCA A GG A C G GG AGCAG ATATGGT CA A TGGTTATT GT GGAAACATGATTTGA TGC G T TAT A T A A A A T T T . AGATTG A C C A AA G T G CCAGA AGT A GT ATTGAAG C TG A . TG G T G TT T C A A . T T CG G . TGTC T G AT AG G T A ATG TGAACTTATTTTAGG A C G AA C T C A A . CACAAAAG G A TT T GTG ACTA G GGTAGGT GA AAGGCCT T GTG A
blockSeqs : . G G . T . T TT . T T . A A T A . C . G T . A G . C . G . T . . . . CT TTCC G . . T . . . C . . ACTG G . T C . . . . . . . . . . . ACAAGCCAGCCG . . . . . . C . G C . . . . . . . G CA . . . G A . T . . . T GG TTA . . T . . TAT C A . C T C . . C . T G G C . . TT C . . . A . CAGAATATCCATCCTTCCAA T G T . . . A TTGTAACAAGC . . . . A . . . . . . . . T CTGG . G GGCTGGATAGCTGTAGTGCAACA . . . . T T . . GC . . . . . . . . . AAGA GCAA . G . A . . T G . . CAG . . . . T . . . . A . . C . T G C C C G A . . TG AA . . . . . . . . . . GGCA . . . . T . GG . . TTT A . . . . T . C . . GTG . . . . A A T . CAG G A T ATTGAAG . TA . . . G G . . . . . . . . T T C . TGTC C . G . C . . TCG TGAACTTTTG . . G . . . C . A . . . T T C GG . . TGT . AGG . T .
blockSeqs : . A C . A . . . . G T . . A G . . T . . . . . . . . . . G A . . . . G . T . . . T G CA . . T . . T . A . T T C . . C . T G G T . . TT G . . . A . CTCATCCTCTCTT T G T . . . C TGTTAGCAAAT . . . . G . . . . . . . . C TA . G GGCAGCAGCTGTGGGG . . . . A . . . G . . . . . . . . . ATGA ACA . A . . . . A G . . . . . . . T . . . . A . . . . . . . . T . G . . CA A . . . . . . . . . . A . . . . T . GC . . TTT C . . . . T . . . . GT . . . . A G C . GA A A T ATTGACT . G . . . T . . . . . . . . . . C C . CT T . T . . . . TG GAATCTCTA . . G . . . T . G . . . A G G T . . TT . GA . C .
blockSeqs : . . . . . . . G C . . . . . . G . . . A . C . . A . . T . C . . . C . . C . . G G C . . . . . . . . . TTCATCCTCTCT T A G . . . G . . . . . A . . . . . . . . . GG . G AAGCAGGT . . . . G . . . C . . . . . . . . . . CA . . G . . TG A . . . . . . . . . . A . . . . . . GG . . TAT A . . . . A . . . . GT . . . . . . T . GA A A T ATTGACT . T . . . . . . . . . . . . . . T G . T T . G . . . . TT TT . . T . . . A . . . . . T T T C . . TG . GG .
blockSeqs : . . T . . T . . . . . . . . . . . . G . . . T . . . G . . . . . . . . . . . . . . . AAGCAGG . . . . . . . . C A . . . . . . . . . . . . CA G . . TGACAG . T . T C . T . . T . . . . . G . . . .
blockSeqs : . . . . . . . . . T .
blockSeqCons : G* CA**** TT **** AGGCTTCATCCTCTCC***************************** TTCAGGC********* AGCNGCAGCTGTAGG************************* AG****** CA*** GG* TNT* GT**** A** T** TC**** TGAACCTCTG****** TGT****
originalCons : ACCCAAAAGTGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATNCTATACTTAGAATTAGTTTT-ATCTTGCTCNTTG---ATAAGTTCTATTACATT-AA-TGGTATGCAGNAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGNAATATGAGTATA---TACAACGATGCATGGTTT--GATG---GCAGTCAAACAAGAAAATTA-CA-A--AACAAGGCTCAATGTTCACCTTAANTG-TCTCCTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGTCT--------GCC-T--CCTCTTTGGACATCCTTG-AGAACTCTCTGCCTTTT-AGA-GACCANTTCCACATGCT-GGCTGTA--C--CTGGGG--AAC-TTTGGATTAAANGTAA-TTC-GGA-TT-TGTT-CTTCGTGT---TG--TTTTCA-CGA---CACCT--TTTGC-C--GCCAGC-C---GCGCCTCACCTG--TTCAG--TGGTCAGGCCGGTCTTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTG-----G---TACCA-A--T-GATTTA-G-AA-TATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACGTTTCCCTCTTAATGGTCTC-C---AAACTTAATTGGATGCTGGTTTC-C--AG-NGA--TAGACAGGGT-GT--TTGAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTG-TTAAGTACATTG----GT----TCCATGCACATGAA-ATTCTTGCTCTCT--T-ATC--C-TATCTTTCTCTTGAGGGNATTGCTTTGT-TGAA-TTT-CGTCTGGTG-T-GTTA-CA--AA-TATTTCC-TCTCCTCT-AATAG-GACTG-TTGTCACTA----AGGC--TA-AAATGGGA-TGAGTTGATAGA-GT-T-GAAGGC-AGTTTC---------ACGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGG-----------------A-------AGCAG--GT------TGG--GC-AG--------ACGTTGGGAGAA-------ACGCTATGATCACTGGGG--GAGGCTG-TAGGCAACACA-GAAGCAGGTGGGCAGGCA-TCGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TCTG-T-GA---AAGCANCAA-GCATCTTCT-GCGGT-AATTCCGACTC-ATT-------CACTGGCCTGNTTGAGGATGTCCAC-ACCAC-TGTCCACTTGCAATGAC-GG--CTTG---GTTG-GAGTTAAT------CGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCGCTG-AAGCTG-AGATGAGAAC-TGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATCGGTGAGAAACGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--CGAGGAAGAA-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGGCAA-A-TACACCTATTGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATG-AGTTTT-GGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-A-TTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--GGAAGGC-TTGA-T-GA-A-NG-CAA-T-CCT-CTGCAA-GGACATCCT--GGAGCTNGCTGTAAATGGGATTTCTCTGCATTTGGTT-GAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG-CTGGAATGT-GGTGTTTTGACTGGTCTGTTTGGGAAAGC-GATGGNTGGAGG-TGAGAAGGTATTC--T--CCTCTATCT-GT-NATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCC-GTAGTTGTTGAGGC-GAA-CTT-T------GGT-AA-GTGCTGTACATCTGAGTGGC--AGG-A-TACTGCTGCT-GCATG-TA--------CTTCT-GATCTGTACTG-TAGAAGNCC-TGGGTAAC----TCTGTT-GGA--T--GTGTCTGTT--GCCGTAGG----TG-AAGAAA--CTTG-TCTTCCATTCT
finalCons : ACCCAAAAGTGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATNCTATACTTAGAATTAGTTTT-ATCTTGCTCNTTG---ATAAGTTCTATTACATT-AA-TGGTATGCAGNAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGNAATATGAGTATA---TACAACGATGCATGGTTT--GATG---GCAGTCAAACAAGAAAATTA-CA-A--AACAAGGCTCAATGTTCACCTTAANTG-TCTCCTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGTCT--------GCC-T--CCTCTTTGGACATCCTTG-AGAACTCTCTGCCTTTT-AGA-GACCANTTCCACATGCT-GGCTGTA--C--CTGGGG--AAC-TTTGGATTAAANGTAA-TTC-GGA-TT-TGTT-CTTCGTGT---TG--TTTTCA-CGA---CACCT--TTTGC-C--GCCAGC-C---GCGCCTCACCTG--TTCAG--TGGTCAGGCCGGTCTTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTG-----G---TACCA-A--T-GATTTA-G-AA-TATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACGTTTCCCTCTTAATG-TCTCCA----AACTTAATTGGATGCTGGTTTC-C--AG-NGA--TAGACAGGGT-GT--TTGAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAATTG-TTAAGTACATTG----GTAGGCTTCATCCTCTCC-----------------------------TCTTTCTCTTGAGGGNATTGCTTTGT-TGAA-TTT-CGTCTGGTGTTCAGGC---------ATTTCC-TCTCCTCT-AATAG-GACTG-TTGTCACTA----AGGC--TA-AAATGGGA-TGAGTTGATAGA-GT-T-GAAGGC-AGTTTC---------ACGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGGAGCNGCAGCTGTAGG-------------------------TGG--GC-AG--------ACGTTGGGAGAA-------ACGCTATGATCACTGGGG--GAGGCTG-TAGGCAACACA-GAAGCAGGTGGGCAGGCA-TCGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TCTGAG------AAGCACA---GCATCTTCT-GCGGT-AATTCCGACTC-ATT-------CACTGGCCTGNTTGAGGATGTCCAC-ACCAC-TGTCCACTTGCAATGAC-GG--CTTG---GTTG-GAGTTAAT------CGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCGCTG-AAGCTG-AGATGAGAAC-TGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATCGGTGAGAAACGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--CGAGGAAGAA-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCAGG-AA-A-TACACCTNT-GGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATG-AGTTTTGT----GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTTA--TTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--GGAAGGC-TTGA-T-GA-A-NG-CAAT--CCT-CTGCAA-GGACATCCT--GGAGCTNGCTGTAAATGGGATTTCTCTGCATTTGGTT-GAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG-CTGGAATGT-GGTGTTTTGACTGGTCTGTTTGGGAAAGC-GATGGNTGGAGG-TGAGAAGGTATTCTC----CTCTATCT-GT-NATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCC-GTAGTTGTTGAGGCTGAACCTCTG------GGT-AA-GTGCTGTACATCTGAGTGGC--AGG-A-TACTGCTGCT-GCATG-TA--------CTTCT-GATCTGTACTG-TAGAAGNCC-TGGGTAAC----TCTGTT-GGATGT----GTCTGTT--GCCGTAGG----TG-AAGAAA--CTTG-TCTTCCATTCT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TATACAGTGGAACAAAGTGCTGAAGAAGGTCTCCAATGTTTGATGATGAAGGCTTCAGTTCACTATGCAGCAATTCTGGAAATGTCTTTGAATTCTTGTTGAGTGATAGTTATGGTAATGGGACAGAGCCATCCAGGACAGTATATATAGCTGGTGGTGGACATGTTCTCTATTACCTGAGACTCCTGTCATGCCAACCTCCTCCTCACTTCTCTCCATAGAGCCAGCAATGGCAGTTCCTAAGATTGTTTTGGTTGTGCAGTGTATCCAGTATGCATCCAGCTAAATTAAATTCCTAGTAATTTGTTACCATGACACTATCAAAACATGTATAGAGCAGGCCAGCTTGTACAGTTAGACTTCCATACCTATAATTGGGTAATGATTAGAGCCTGTTGACAATTGAGGAGCCCAGGTGAGA
Unaligned ( gi|21 ): GTGGGAATTAGGCACCTGTAATTGTGTAATGATTAGTTTAATTGGATAATGGAGGAGCAAAGGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111 1111111111111111111111111111
lowQualScore : 111 22222 1 111 111 1 3333333 11 222 11 3333 1 1 1 2222 11 11 22 1 22 5555555555 222222 11 1 1 1 1 1 333333 222 1 111 1 1 1 1 1 222 11 1 222 222 4444444444444444444 11 11 1 11 111 22222 2222222 11 222222222 1111 22 11 33333333333 22222 111 11 444444444444 11 33333333333333333333333333333333333333333333 22222 8888888888888888888 11111 222222222 22222222 0000000000000000000000000000 2222222 11 11 333333 222222222 1 1 1 3333333 1 1 222222 111 1 222222 1 1 1 1 1 1 1 1 1 333333 1111 22 1111 11111 22222222 2222222 11 22222222 555555555555555 1 1 2222222 111111 111 2222222222 1 11 1 11 1 1 1 111111 1 11 777777777777777 22222222 222 1111 1111111 11 2222222 111 1
lowQualScore : 777 77777 0 1 0 1 777 3 000 0 1 1111111 0 33 7 66 1 3 333 6 0 88 0000 5 5 7 3 2222 33 7 33 7 1 55 7 7 6 3 00 1111111111 444444 33 3 7 2 3 3 7 1 3 6 999999 555 3 333 1 3 3 3 3 3 6 333 88 3 333 555 4444444444444444444 88 88 7 6 2 33 444 55555 2 6 6666666 8 8 8 8 11 8 444444444 4444 8 22 3 8 88 0 0 11 8 8 1 0 33333333333 6 99 77 99 0 6 88888 555 6 2 9 2 6 6 6 3 1 2 1 8 11 66 5 8 0 8 111111111111 8 33 00000000000000000000000000000000000000000000 6 77777 3 6 1 6 6 6 1 99 5555555555555555555 6 6 5 6 55555 99 6 5 3 6 6 6 6 666666666 6 11111111 0 8 1 3333333333333333333333333333 6 6 6 1111111 1 55 8 8 0 0 44 8 11 8 8 8 8 8 8 8 8 000000 8 777777777 8 4 0 9 0 2222222 1 2 0 0 0 0 222222 777 0 888888 0 3 0 0 0 0 2 0 0 2 0 0 3 0 2 2 2 0 2 111111 1 99 6 0000 22 99 4444 6 66666 6 99 6 6 6 99 22222222 0 0 6666666 11 8 99999999 88 000000000000000 8 0 8 8 11 0 0 8 8 8 8 1 0 0 8 0 3 0 8 8 2222222 8 8 8 8 88 8 3 1 5 444444 111 3 77 2222222222 5 7 5 8 11 0 3 6 8 11 0 8 0 8 8 8 0 8 3 0 0 0 0 77 1 6 222222 1 6 77 99 3 6 6 66 000000000000000 6 6 2 99 8 8 8 8 3 8 99999999 8 1 88 1 666 7777 8 3333333 11 7777777 8 444 0
lowQualScore : ... ..... . . . . ... . ... . . ....... . .. . .. . . ... . . .. .... . . . . .... .. . .. . . .. . . . . .. .......... ...... .. . . . . . . . . . ...... ... . ... . . . . . . . ... .. . ... ... ................... .. .. . . . .. ... ..... . . ....... . . . . .. . ......... .... . .. . . .. . . .. . . . . ........... . .. .. .. . . ..... ... . . . . . . . . . . . . .. .. . . . . ............ . .. ............................................ . ..... . . . . . . . .. ................... . . . . ..... .. . . . . . . . ......... . ........ . . . ............................ . . . ....... . .. . . . . .. . .. . . . . . . . . ...... . ......... . . . . . ....... . . . . . . ...... ... . ...... . . . . . . . . . . . . . . . . . . . ...... . .. . .... .. .. .... . ..... . .. . . . .. ........ . . ....... .. . ........ .. ............... . . . . .. . . . . . . . . . . . . . . . ....... . . . . .. . . . . ...... ... . .. .......... . . . . .. . . . . .. . . . . . . . . . . . . . .. . . ...... . . .. .. . . . .. ............... . . . .. . . . . . . ........ . . .. . ... .... . ....... .. ....... . ... .
lowQualScore : 555 22222 2 0 0 0 555 2 222 0 0 5555555 8 88 0 55 0 2 333 7 7 33 0000 5 5 3 3 7777 33 3 33 3 0 33 3 3 7 3 00 3333333333 777777 33 3 3 0 3 3 3 0 3 7 333333 000 3 777 0 3 3 3 3 3 7 333 33 3 333 777 7777777777777777777 33 33 3 7 0 88 000 00000 5 5 0000000 0 0 0 0 00 0 000000000 8888 0 00 8 0 66 8 8 00 0 0 4 6 22222222222 7 22 77 22 3 7 00000 000 7 5 8 5 7 7 7 2 0 5 0 0 00 22 0 0 8 0 000000000000 0 66 22222222222222222222222222222222222222222222 7 00000 2 7 0 7 7 7 0 22 2222222222222222222 7 7 7 7 88888 22 7 7 6 7 7 7 7 777777777 4 22222222 8 0 0 5555555555555555555555555555 7 7 7 7777777 4 88 0 0 8 8 66 0 00 0 0 0 0 0 0 0 0 444444 0 222222222 0 2 0 0 0 5555555 0 5 2 8 0 0 888888 555 0 888888 0 2 0 0 0 0 0 0 0 5 0 0 2 2 5 5 5 2 0 000000 0 22 7 8888 22 22 2222 7 77777 7 22 7 7 7 22 00000000 8 8 0000000 00 0 00000000 88 000000000000000 0 0 0 0 88 8 6 0 0 0 0 4 8 8 0 8 6 6 0 0 2222222 0 0 0 0 88 0 2 7 7 444444 999 6 11 4444444444 7 1 7 0 00 8 8 0 0 00 8 0 6 0 0 0 8 0 6 6 8 8 6 33 0 7 888888 7 7 77 22 3 7 7 55 222222222222222 7 7 5 22 0 0 2 0 8 0 00000000 0 4 66 0 888 0000 0 8888888 00 0000000 0 000 0
consensus : ACCCAAAAGTGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATNCTATACTTAGAATTAGTTTT-ATCTTGCTCNTTG---ATAAGTTCTATTACATT-AA-TGGTATGCAGNAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGNAATATGAGTATA---TACAACGATGCATGGTTT--GATG---GCAGTCAAACAAGAAAATTA-CA-A--AACAAGGCTCAATGTTCACCTTAANTG-TCTCCTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGTCT--------GCC-T--CCTCTTTGGACATCCTTG-AGAACTCTCTGCCTTTT-AGA-GACCANTTCCACATGCT-GGCTGTA--C--CTGGGG--AAC-TTTGGATTAAANGTAA-TTC-GGA-TT-TGTT-CTTCGTGT---TG--TTTTCA-CGA---CACCT--TTTGC-C--GCCAGC-C---GCGCCTCACCTG--TTCAG--TGGTCAGGCCGGTCTTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTG-----G---TACCA-A--T-GATTTAG-AAATATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACGTTTCCCTCTTAATGGTCTCC---AAACTTAATTGGATGCTGGTTTC-C--AG-NGA--TAGACAGGGT-GT--TTGAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCA------------ATTG-TT-AAGTACATTGGT-A-G--------------T--TCA--------------------TCCTC-TCC---TCTTTCTCTTGAGGGNATTGCTTTGT-TGAA-TTT-CGTC--TGGTGT--T----CA--G----ATATTTCC-TCTCCTCT-AATAG-GACTGTT-GTCACTA----AGGC--TA-AAATGGGA-TGAGTTGATAGA-GT-T-GAAGGC-AGTTTC---------ACGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGGAGC-G--CAGCTGT----------------AGG-TGG-GC-AGACGTTGGGAGAA-------ACGCTATGATCACTGGGG--GAGGCTGT-AGGCAACACA-GAAGCAGGTGGGCAGGCA-TCGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TC-TGAT-G--AA-GC-G-C--A--GCATCTTCT-GCGGTAA-TTCCGACTCA-TT-------CACTGGCCTGNTTGAGGATGTCCAC-ACCACT-GTCCACTTGCAATGAC-GG--CTTG---GTTG-GAGTTAAT------CGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCGCTG-AAGCTG-AGATGAGAACT-GGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATCGGTGAGAAACGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--CGAGGAAGAA-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCA-GNAA-A-TACACCTATGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATGA-GTTTT--G-T--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-ATT-GTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--GGAAGGC-TTGA-T-GA-AN-G-CAAT-CCT-CTGCAAGG-ACATCCT--GGAGCTNGCTGTAAATGGGATTTCTCTGCATTTGGTT-GAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG-CTGGAATGT-GGTGTTTTGACTGGTCTGTTTGGGAAAGC-GATGGNTGGAGG-TGAGAAGGTATTC--T--CCTCTATCTG-T-NATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCC-GTAGTTGTTGAGGCTGAACTT-T-----GGGT-AA-GTGCTGTACATCTGAGTGGC--AGG-A-TACTGCTGCT-GCATG-TA--------CTTCT-GATCTGTACTG-TAGAAGNCC-TGGGTAAC----TCTGTT-GGA--T--GTGTCTGTT--GCCGTAGG----TG-AAGAAA--CTTG-TCTTCCATTCT
Reference ( family-6572 ) : ACCCAAAAGTGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATNCTATACTTAGAATTAGTTTT-ATCTTGCTCNTTG---ATAAGTTCTATTACATT-AA-TGGTATGCAGNAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGNAATATGAGTATA---TACAACGATGCATGGTTT--GATG---GCAGTCAAACAAGAAAATTA-CA-A--AACAAGGCTCAATGTTCACCTTAANTG-TCTCCTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGTCT--------GCC-T--CCTCTTTGGACATCCTTG-AGAACTCTCTGCCTTTT-AGA-GACCANTTCCACATGCT-GGCTGTA--C--CTGGGG--AAC-TTTGGATTAAANGTAA-TTC-GGA-TT-TGTT-CTTCGTGT---TG--TTTTCA-CGA---CACCT--TTTGC-C--GCCAGC-C---GCGCCTCACCTG--TTCAG--TGGTCAGGCCGGTCTTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTG-----G---TACCA-A--T-GATTTAG--AATATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACGTTTCCCTCTTAAT-GTCTCC---AAACTTAATTGGATGCTGGTTTC-C--AG-NGA--TAGACAGGGT-GT--TTGAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCA------------ATTG-TT-AAGTACATTGGT-AGG-------------CT--TCA--------------------TCCTC-TCC---TCTTTCTCTTGAGGGNATTGCTTTGT-TGAA-TTT-CGTC--TGGTGT--T----CA--G----GCATTTCC-TCTCCTCT-AATAG-GACTGTT-GTCACTA----AGGC--TA-AAATGGGA-TGAGTTGATAGA-GT-T-GAAGGC-AGTTTC---------ACGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGGAGCNG--CAGCTGT----------------AGG-TGG-GC-AGACGTTGGGAGAA-------ACGCTATGATCACTGGGG--GAGGCTGT-AGGCAACACA-GAAGCAGGTGGGCAGGCA-TCGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TC-TGA--G--AA-GC-A-C--A--GCATCTTCT-GCGGTAA-TTCCGACTCA-TT-------CACTGGCCTGNTTGAGGATGTCCAC-ACCACT-GTCCACTTGCAATGAC-GG--CTTG---GTTG-GAGTTAAT------CGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCGCTG-AAGCTG-AGATGAGAACT-GGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATCGGTGAGAAACGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--CGAGGAAGAA-TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCA-GGAA-A-TACACCTNTGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATGA-GTTTT--G-T--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-ATT-GTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--GGAAGGC-TTGA-T-GA-AN-G-CAAT-CCT-CTGCAAGG-ACATCCT--GGAGCTNGCTGTAAATGGGATTTCTCTGCATTTGGTT-GAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG-CTGGAATGT-GGTGTTTTGACTGGTCTGTTTGGGAAAGC-GATGGNTGGAGG-TGAGAAGGTATTC--T--CCTCTATCTG-T-NATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCC-GTAGTTGTTGAGGCTGAACCTCT-----GGGT-AA-GTGCTGTACATCTGAGTGGC--AGG-A-TACTGCTGCT-GCATG-TA--------CTTCT-GATCTGTACTG-TAGAAGNCC-TGGGTAAC----TCTGTT-GGA--T--GTGTCTGTT--GCCGTAGG----TG-AAGAAA--CTTG-TCTTCCATTCT
gi|1 : ACCCAAAAATGGAATGAAA---GAGGAAAG---AAATAACCGAAGAAGCATTATGTTATACTTAGAATTAGTTTT-ATCTTGCTCTTTGGTAATAAGTTCTATTATATT-AAATGGTATGACGTAAATAAGTATGAT-----TATATGATCAATGATTTCATTATA--ATAAAATAAGTAATATGAGTATA---TA--ATGATGCATGGTTT--GATG----CAGTCAA-CA-GAAAA--A-CACA--AACAAG-CTCAATGTTCAC-TTAATTA-TC--CTCTTCCAACGTGTTGAGACATTC-AAGGACATCGTC-GGT-T--------GCC-T--C-TCTTTG-ACATCCTTG-AGAACTCTCTGC-TTTT-AGA-GACCATTTCCACATGCT-GGCTGT---C--CTGGG---AAC-TTTGGAT--AAAGTAA-TTC-GGA-TT-TGTTTCTTCGTGT---TG--TTTTCA-CGA---CACCT--TTTGC-C--GCCAGCACA--GCGCTTCACCTG--TTCAG--TGGTCAGGCCGGTTTTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-GGTTGTC-CAGG--TGGG-TCTC-----G---TACCA-A--T-GATTTAG--AATATCACGAGAC-TT-TGAGGCC-TGGCTTGGAGA--GCA-G-ACATTTCCCTCTTCAT--TCTCT---ATACTTAATTGGATGCTGGTTTC-C--AG-AGA--TAGACAGGGT-GT----GAAACCACCG-CACCCTTTTGTTTGGCC-AT-CCACT-TCTTCACTTGTTTGCGG-TCAGTCCTGACAGCCT-CACCAGCTCGT--CTAC--CGTCGTCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCA------------GTTG-TT-AAGTACATTGTG-AAG-------------TT--CCATGCACATGAAATTCTTGCTTTCTTCATCCCTATCTTTCTCTTAAGGGGATTGCTTTGT-TGAAATTT-CGTT--TGGTGTG-T----TA--GCAAAATATTTCC-TCTCCTCT-AATAG-GACTGTTTGTCACTA----AGGC--TA-AAATGGGA-TGAGT-GATAGA-GT-T-GAAGGC-AGTTTC---------ATGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGGA--AG--CAG--GT--------------------TGG-GC-AGACGTTGGAAGAA-------ACGCTATGATCACTGGGG--GAGGCTGTTAGGCAACACA-GAAGCAGGTGGGCAGACA-TTGG--GAGAAA-CAC-TATG-ATCACTG-GG-GA-ACATATTTT-TC-TGT--G--AAAGC-A-TCAA--GCATCCTCT-GCAGTAAATTCC-ACTCAATT-------TACTGGCCTGATT-AGGATATCCAC-ACCACTTGTCCACTTGCAATGACAGG--CTTG---GTTG-AAGTTAAT------TGCAGGAT-CCACT-C-CTG-TTCAGAGG-AGGCACTGCTG-CCACTG-AAGCTG-AGATGAGAACTTGGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATTGATGAGAAATGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--TGAGAAAGA--TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AA--GCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCA-G-AA-A-TACACC-ATG-ACTTTGAAGCATATTGGGA-TTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTGTTTG-AATGAAGTTTT--GGT--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-ATTTGTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAG--AGGAGGC-TTGA-T-GA-ACTG-CAATTCCT-CTGCAAGGGACATCCT--GGAGCTTGCTGTAAATGGGATTTCTCTGCATTTGGTT-AAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG--TGGAATGTAAGTGTTTTGACTGGTCTGTTTGGGAAAGT-TATGGGTGGAGGTTGAGAAGGTATTC--T--CCTCTATCTG-T-GATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCT-GTAGTTTTTGAGGC---------------GGT-AA-GTGCTGTACATCTGATTGGC--AGG-A-TACTG-TGCT-GCATGTTA--------CTTCT-GATCTGTACTA-GAGAAGGCC-T-GGTAAC----TATGTT-GGA--T--GTGT-TGTT--GCCAT-GA----TG-AAGAAA--CTTG-TCTTCCATTCT
gi|10 : TGGTCT-GGGTCCAGA-GGGTGAAG--GG----CGTTGA-TTGA-AG-G-CAAG-TCC-CTGCAAG--ACATCCCTGGGAGCTGGCTGTAATTTGGATTGCTCTGCATTTGGTTTGAAGAACTGGGAAGGG--GGA--GC-TTAGTGGCTGTTCTTGTATGTTCTGTGGACTGGAATGT-GGTGTTT-GGCTGCTCTGTT-GGGAAAGT-GATGGGTGGAGG-TGAGAAGGTATTC--C--TCTCTATCTG-T-GATCTGTGGGTAAAGACAGGGAAAGCTCTTGTCC--TAGATGTTGAGGCT-----T--------GGT-AACGTGCTGTACATCTGAGTGGC--AGGCATTACTGCTGCT-GCATG-TA--------CCT-T-GATCTGTACTGTTAGAAGTCTGTGGGGAAC----TCTGTTGGGA--T---TGCCAACT--GCTGTAAGGCCTTG-AAGAAA--TTTGATCTTCCATTCTccag
gi|11 : A-TGAATCCGTAAA-GT-T-GAAGGC-AGTCTC---------ACATTGAGT--T---A-TATCCAGC-CCCTGAAACACTGGAGCTG--AAGCTGTAGGGTAGGC-------AGG-TGG-GC-AGATGTCGGGAGAA-------ACACCGTAATCACTGGGG--G
gi|11 : CACTGGAGCTGAAGCTGT-AGG----GTA-G--GCAGGTGGGCAGATG-TCGG--GAGAAA-CAC-CGTA-ATCACTG-GG-GGGAGATATCGC-TT-TGA--AGAAA-GCTG-C--A--ACATCTTCT-GCTGTAA-TTTCGAATAA-GT-------CACTTTCCTGTTTGATGCTGTCCAC-ACCACT-GTCCACTTGCAATGG-------TTG---ACTG-GAGCCAATGAAATTCACAGAAT-CCTTTTC-CTG-TTCAGAGG-AGGCACTGCTA-CTGCTA-CTGCTG-CGAGGAGAACT-GGAGGGGGAAATGATT-TGTGATCTCTGTTGCTGTGATAAAGCAGTGATGACATTCAAGTCCGGTGTATTGGGGAGAACCGGAGCA------TGTTTGgagatatcgctttgaagaaagctgcaacatcttctgctgtaatttcgaataagtcactttcctgtttgatgctgtccacaccactgtccacttgcaatggttgactggagccaatgaaattcacagaatccttttcctgttcagaggaggcactgctactgctactgctgcgaggagaactggagggggaaatgatttgtgatctctgttgctgtgataaagcagtgatgacattcaagtccggtgtattggggagaaccggagcatgtttg
gi|12 : atgaatccgtaaagttgaaggcagtctcacattgagttatatccagcccctgaaaCTGCTGTGAGACTC--G-CTGGA--TGAGAAAGA--TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCA-GGAA-A-TACACCTATGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTG-TTG-AATGA-GTTTT--G-T--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-ATT-GTAGTCGTGGGTTAT
gi|13 : TAGCGACTGTT-GTCACTATCCTAG-C--TA-AAAGGGGA-TGAGTGAATAGATGTCT-GAAGGCGAGTTTCCCTCGTTTAACAT-GAGTCTG---G-A-TCTGAC-TCGTGAA-CACTGAAGC---------------------------AGG-TGGAGCGAGACGTTGGAAGAATCAAATCGCTCTATGTTCACTGGGGT-GAGGCTGT-AGGCAACACA-GAAGCA-GT-GGCAGG-A-TCAGTTAAGAAACCACTTATG-ATCACTGAGG-GG-ACATATTTC-TCATGATCG--AA-GC-GTC--AGTGCATCTTCT-
gi|14 : TAATTGGATTACGGTT-C-C--AG-TGA--TGGACAGTGTTGTAGCTGAAATC-------------TGCTTGGGC-CT-CAACT-TGTT-------TTGCAATTCAGTC-----------CA--AG---------A----GTTGTCAGTGG--T-GTGG-TAC-AGACGTGGGGCGGGCA-CCA------------ATTG-TT-CAGTACATTGGTCAGA-------------ATATCCA--------------------TCCT--TCCAA-TCTTTCTCGTGAGGGATTTACTTTGC-TGAA-CTT-CCCC--TGGTGT--TGTAACA--A----GCATTTCCTTCTCCTCTGAATGG-Gtgcag
gi|15 : atgAAAGTGGAATGAAATGAAAGGAAAATTAAAAAAATCCAAGAAACGACATTCAACATTTAGAATTACTTTTTATCTTACTTGTTG---ATAAATTCTTTTACA---AA-TGAGATGCAAAAATTCAGTATGAT------ACATGAGCACTGATTTGATTGTA--ATGAATTA-GAAATATGAGTATA---TACAATAATACATGGTTT--GATGCATGCAG
gi|16 : ACCCAAAAATGGAATGAAA---GAGGAA-G---AAATAACCGAAGAAGCATTATGTTATACTTAGAATTAGTTTT-ATCTTGCTCTTTG---GTAAGTTCTATTATATTAAA-TGGTATGCAGTAAATAAGTATGATAATGATATATGATCAATGATTTCAATATATGATAAAAT-AGTAAT-TGAGTAatagaaca
gi|17 : aaaac-TCT---TTCTTCTCTTGAGGATAT-ACTCT-C-TGCC-TTC-CACCGGTGTTGT--T----CATTG----ATATTTCC-TCTCCTCT-AATAG-GA-TGTA-GTCACCA----AGGCTGTA-AATTGAGATTTAGTTGAT
gi|18 : ttagtccaggcccatgaaaagttgttctgtttcttgattccggagttctctaatatGAAAGC-GGTGGCTGGAGG-GGAGAAGATATTC--TGTCCTC---CTG-T-TATCTGTGGATAA--GCTGGGAAA-CTC-TGGCC-GTAGT-GCTGGGGCTGAACTTTT-----GGGT-AA-GTGCTGTACATCTGAGTGGC--tca
gi|19 : GGAGCAAGAGATTGTTTGCTGTAAGACCC--A-ATGGAAACAAGGGAGAACTGTCGAA--G----GAATGGATCCTGAG-GATGGTACTCGCATGTGG-GT--GAG-TCCAGTATT--ATTG
gi|2 : AAGTGGAATTTAA---GGGGAAA-----AATAACCAAAGAAGAATTATCCTATACTTAAAATTAGTTTT-ATCTTGCTCATTG---ATAAGTTCTA--ACTTT-AA-TGATGTGCAGGAAATAAGTATGA------TATATGACCAATGATTTCATTATG--AT-AAATAAGGAATATGAGTATAAGGTACAACGATGCATGGTTTTGGATG---GCAGTCAAACAAGAAAATTACCA-ACCAACAA-GTTCAATG-TCA-CTTAAAT--TCTCCTCTTCCAACATGTTGAGACATTCTAAGGGCATCATCTAGTCT--------GCCTT--CCTCTTT-GACATCCTTG-AGAACTCTCTGCCTTTT-AGAGGACCTATTCCACATGCTAGGCTGTAACT--CTGGGGACAACTTTTGG--TAAAGATAA-TTCGGGA-TTATGTT-CTTCGTGG---TG--TTGGCACCGACTTCATCTTATTTGCACAAGCCAGC-C---G---CTCACCTGCTTCCAG--TGGTCAAACC-GTCTTC--ATGCGCC-----AA-CTCTTTTTTCTGCTCTTC-------AGTAGGG-TATGG-G-TTTTCGCAAGATTTGC-TTTG-----G---TACCA-ACTT-GCTTTAGGAAATAT-ACAACAT-TTGGGAGGCCATGGGCTGGAAAAGGCA-GAACGTATCCTTATTAATGGTCTTC----AATTTAATTGGATGCTGGTTTCGC--TG-TGACTTGGACAGGGT-A---TTGAAA-CACCG-CACTCTTTTG-TTGGCCAAT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCTCCACCAGCTCGTGCCTACTTCGGTGTCGGTGGGATAATGGGTACTGGGTGTGGCTCTGGTATCCA------------ATTG-TT--AGTACATTGGT------------------C--TCA--------------------TCCTC-T-C---TTTTTCTC-TGA-GGTATTGCTTGGT-TGGA-TGT-CCTC--TGGTG---------------------------------T-AATAG-GACTG-A-GTCACTG----TGGC--TATAAATGGGG-TGAATTGATAAA-GT-TGGAAGGC-AATTTC---------ATGTTGAGC--GTAAGTAATCGAACATGGTGAAGCACTGGGGCTGGATAGCTGTAGTGCAACATAGAAGCAGG-TGG-GC-AGACTTTGGGAGAA-------ACACTATGATCACTGGGG--AAAGCTGT-AGGCAACACACGAAGCAGGTGGGCAGGCACTTGG--GAGAAA-CAC-TATGAATCACTG-GGAGG-AAATATTTCAAC-T----G--AA-GCAA-C--A--GCATCTTTTCGCGGTAA-TTCCAACTCA-TTCTTCCCCCACTGGCCTGTTTGAAGGAGTCCACAACCACT-GTCCACTTGCAATGAC-GGACCTAG---GTCGTGTCTTAAT------CGCAGAATGCCACTTCACTGTTTCAGAGGAAGGCACTGCTGCCCACTGAAAGGTGAAGATGAGAA-T-GGTGGGAGAAATGGTTGGGTGATTTCTGTTTC-------AA-----------------GTCAGGTGTATCAGTGAGAAAC--AGCAG-----CATCTG--GT--GACTTGAG-CTTGA--C--CGAAG-A-TGTCAGA--GGAGAAAGTGGAATCAGAGCGAAGATGC-----TATGGAGT--G-GCTCCA-TATT--GTTGAAGGGCA----AGAGGTTGGTTATATAA-CC-------TGAG--GAAAAC--------ATGA--TTGA---------------TGCA-GCAAGA-TACATCTTTGGATGTTGAAG-ATATT-GGAATTGTAGA-GAGAAAGGCCCAGGAATTTGGCAAGATTCTGAGAGCAGGCTCTGT-GTTGGG-TTGTG-TGTTGG-GATGA-CTTTT--G-TG-GGATCTGG-AATTT-TGCTGGGAAGCAGACCGCTGTTGTATCCAATTGTTAATT-GTTATCATGGGTCACAGTCTGGGAT---CAGGGGTGGAAGTGGAAGGC-TTGATT-GA-AG-GCCAATGTCT-CTGC
gi|20 : agaacacctTGGAGCACTGGGGCAG--CAGCTGT----------------GGGGTAG-GC-AGACGTTGGGAGAA-------ACctgggtaagggg
gi|3 : tgaattaggactaaccatctgtTGCTGTGAGACTT--GGCTGAA--CAAGGCGGAA-TGTCTGAAGG----AATCGGATCCTGAG-GACGG-AC-----TATGG-GTGGG-G-TCCA-TATTGGGTTGAGA---AGCAGAGAGGCTGGTTATATGATCCATATGGTTGAGCAG-AGGCTGGTTATTATGAGTCTGAGGAAACATGATTTGATGCATGCAA-ATTACACCTTTGGACTTTGAAGCATATTGGGCATAGTAGATGAG-AAGGCCC-GGAATATGGC-AGATTCTGAGACT-GGCTCTGTAGTTGGGTTTGGGTTGCTGGTACTGA-CTTTTAGA-TTGGGGTCTGGAAATAACTGCTAGGAAA-GAG-CAATGCCGTATCC-ATTATC--TT-CCA-------GTTA----CT-GGAT---------TGGA------------TG--T-GACAG-G-CATTACCTACCGCAAGG-ACATTCT--GGAGCTGGCTGAAAATGGGATTCCTCTGCATTTGGTTGGAAGAACTGG-GTGGATTGACAGGCTTTCATGGTTGTT-TTGT-TGTGCT-TGG-CTGG-ATGT-GGTG-TTTGACTGG-CTGTTTGGAAAAGCGGGTGGCTGGAGG-GGAGAAGAT-TTCTGT--CCTGCACTTG-TATATCTGTGGATAA--TCTGGGAAACCTC-TGGCCAGTAGTCGCTGGGGCTGAACTTATTTTAGGGGTAAA-GTGCTGTAACTCTGAGTGGCAAAGC-A-TACTGCTGCTAGC-TG-TACACAAAAGCATCTGGATATGTTCTG-TAGAAACCT-GGGGTAACACTATCTGTT-GGA--T--G-GTCTGTTGAGGCGAAGG----TGTAAGAAAGTGTTG-TATTCC
gi|4 : tTC--AT-C-CC-----AAGCTCTTCCTTCTGTTGTTC-------TGTGGGG-TAGGG-G-TTGTC-CAGG--TGGG-TCTC-----G---TACCA-A--T-GATTTAG--AATATCACGAGAC-TT-TGAGGCCATGGGCTGGAGA--GCA-G-ACATTTCCCTCTTCAT--TCTCTT--AAACTTAATTGGATGCTGGTTTC-C--AG-AGA--TAGACAGGGT-GT--T-GAAAC-ACCG-CACCCTTTTGTT-GGCC-AT-CCACT-TCTTCACTTGTTTGCGGGTCAGTCCTGACAGCCT-CACCAGCTCGT--CTACTTCGTCGTCGGTGGCAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCAGTTGTTAAGTACATTG-GTGAAGTCCATGCAC-ATGAAATTCTTGCTTTCT--TCA--------------------TCCTC-TA----TCTTTCTCTTAAGGGGATTGCTTTGT-TGAA-TTT-CGTT--TGGTGTGTTAG--CA--A----ATATTTCC-TCTCCTCT-AATAG-GACTGTT-GTCACTA----AGGC--TA-AAATGGGA-TGAGTTGATAGA-GT-T-GAAGGC-AGTTTC---------ATGTCGAGT--G---G-AATCGAAC-TCGTGAAGCACTGAAGC---------------------------AGG-TGG-GC-AGACGTTGGAAGAA-------ACGCTATGATCACTGGGG--GAGGCTGT-AGGCAACACA-GAAGCAGGTGGGC---CA-TTGG--GAGAAA-CAC-TATG-ATCACTG-GG-GG-ACATATTTC-TC-TGATGA--AA-GC-A-C--A--GCATCTTCT-GCAGTAA-TTCC-ACTCA-TT-------TACTGGCCTGATTGAGGATATCCAC-ACCACT-GTCCACTTGCAATGAC-AG--CTTGTTAGTTG-AAGTTAAT------TGCAGGAT-CCACTTC-CTG-TTCAGAGG-AGGCACTGCTG-CCACTG-AAGCTG-AGATGAGAACT-GGTGGGGGAAATGGTT-GGTGATTTCTGTTTCTGTGATGAAGCACTGATGACATTCACGTCGGGTGTATTGATGAGAAATGGAGCA------CGTCTGCTGTGAGACTC--G-CTGGA--TGAGAAAGA--TGTCTGA--G----AAGTGGATCCTGAG-GAAGATAC-----TATGG-GT--G-G-TCCA-TATT--GTTGAGG---A----AAAGGCTGATTACATAATCC-------TGAG--G-AAAC--------ATGA-TTTGA---------------TGCA-GGAA-A-TACACCTATGGACTTTGAAGCATATTGGGAATTTTGGA-GAG-AAGGCCC-GGAATTTGGC-AGAATCTGAGAATAGGCTCTGTAGTTAGG-CTGTGTTG-TTG-AATGA-GTTTT--G-T--GGATCTGG-AATTTCTGCTGGGAAG-AGG-CGCTGTTGTATCC-ATTGTT-ATT-GTAGTCGTGGGTTATAGTCT-GGAT---GA-GGGTGGAA--GGAAGGC-TTGATT-GA-CT-G-CAAT-CCT-CTGCcatgcattcatcagagaaggtgcctgccacaactgaagaacaaggagcttagacaagtgcaataccaatatttgatgtgtatgaagaagtttgttgtctcagaattctgagcacccaataatttcccataggaaaggatgctttcggtggtaaggttatgatataaaagaaggagcacttgactgagactcagtacataagtttataagcgcgctggtggtgggcatgctccaacattctgagactaactcagcatggccaaacttcctcgcatccacgctcttccccatcacgtagtgccagtaattttgcaatccatcgacagaacccagggtttactttgtgttttctaaaaaattagtcaggaaataatcacttcagaactagcactacacactatgataaacacacaatcggataataactttataagtggaaagagtgggaattaggtcactgtaattgtgtaatgattagtctttaatttggagtatgggacagcgagcaaaggt
gi|5 : AGTCT-GGAT---GA-GGGTGGAA--GGAAGGC-TTGA-TTGA-CT-G-CAAT-CCT-CTGCAAGG-ACATCCT--GGAGCTTGCTGTAAATGGGATTTCTCTGCATTTGGTT-AAAGAACTGG-AAGGA--GGAAGGC-TTAATGGTTGTT-TTGT-TGTTCTGTGG-CTGGAATGT-AGTG-TTTGACTGGTCTG-TTGGGAAAGT-TATGGGTGGAGG-TGAGAAGGTATTC--T---CTCTATCTG-T-GATCTGTGGGTAA--GCAGGGAAA-CTC-TGTCT-GTAGTT-TTGAGGC--------------GGGT-AA-GTGCTGTACATCTGATTGGC--AGG-A-TACTGTTGCT-GCATG-TA--------CTTCT-GATCTGTACTA-GAGAAGGCC-T-GGTAAC----TATGTT-GGA--T--GTGTCTGTT--GCCAT-GA----TG-AAGAAA--CTTG-TCTTCCATTCT
gi|6 : AGTCT-GGAT---CA-GGGTGGAG--GGAAGGC-----------------AAT-CCT-CTTCAAGG-ACATCCT--GG------TTGTAAATGAAATTTCTCTGCATTTGGTT-GAATAACTGG-AAAAA--AGAAGGC-TTCATATTAGTT-TTGC-TGTTCTGTTG-CTGGAATGT-GGTGCTT-GACTTGTCTGTT-GTGAAAGT-GATGGCAGGAGA-TGAGAAGATATTC--T--C-TCTATTTGGT-TACCTGTGGACAA--GCAGAGAGC-CTC-TGTCC-GTAGC----------GAATCTCT-----AGGT-AA-GTTCTGTACATC-----------AG-A-TGCTGATGCT-TCGTG-TA--------CTTCT-TATGTATTCTG-TAGAATTCC-C-TGTAAC----TCTGGG-GGAGGTAGGTGTCTGTT--GCCAC-GG----TG-AAgaagagcctgtacagtcgaacaacgagcttaagtctccaatatttgatttatgaagaatttttggagtctcaattcagcataaatgatgattttcaatgaaggatgctttgaattctgatttgatgatagcttgtacatggagctggcttcagtccagtatatatagctggtggtggacatgttctctattacctgagactctcgacttcatgccaacctcctcctcactcctctccatgccagccattgcaatccatcctcgacattgttttccttgtgcagtatatcaatatacatccagaaaaattgaattcatagtaatttctgacaattacacttatcaaattatgtttacagtgcagttcagctttaacagtgggaatgggacacctgtaattgggtaataatgattagattaattggataatggaggagcccaggtgt
gi|7 : AATTA-CA-A--AACAAGGCTTCATGTTCACCTT-AGTGCTTTCCTCATCCAACGTA-TGA-ACATTC-AAGGACAATGT--GGTTTCTTACGTGGCT-TCACTTCTTTGGATATCCATGTAGA--CCTCTGCTTTTCAAGA-G-CCACTTACACATGCT-GGCT-TA--CTGCTTTGG--AAC-TTTGGATTAAACGTAATTTC-GGACTT-TGTT-CTTC-TGTTTATGTCTTTTCA-CGA---CACC---TTTGCTC--GC--GC-CCAGACGTCTCACCTG--TTCAGTTTGG-CAGGCCGGT-TTCTAAT-T-CCTTCATATGCTCAT-CTTCTGTGATTCCTCGCTTTGTGGGGATGGAGTG-TTGTC---AG--TGGGATCTGCACCAGCTTTACCACA--TAGATTTAGCAAGTATC-CGAGAC-TT-TG-GGCCAT-GGCTGGAGA--GCACG-ACATTGTCCTCTCATT-G-CTCCGTTAAACTTAAGTTGATGCTGGTTTC-CCAAGCAGA--TAGA-AGGGT-G---TTGAAA-CACCGCCGCCTTTTTGTTTTG-C-ATGCCACTCTGTTCAC-TGTTTGC-GGTCAGTCTTGACAGCCacattccttgaagctgaggcctgttacagtatcactattgtttatgattacagaggtaaagtgaacaaacactcagcatcaggaattttgtacgtcctctaccatcgataggcttttgatgacttacttgggactaagctcactcagagagcaggatgagcaccagtcgaacagtatatatagcgtgtgttggtacaactctctattacctgagactctcaacttcatcctttgtccttctcatactccacccattagtgccagtaaatctgacacaatacctccacaagatgtcttctttagtgtattatgagcaaaattattagtcaatattataacttcaaacattaattacaacttatgtgcaggaatttgtttatataagatggccccatgttcagctttatagagtgacccgcggcaatcaaacacctcgttaagctacatgcgtgtagattaattgggatggagccaaggaattgg
gi|9 : CTATTGTTC-------TGTGAGG-TAGGG-G-TTGTC-CAGA--TGAG-TTTG-----G---TATCA-C--T-GATTTAG--AACATCG-GCGACATT-GGAGGCCATGGGCTGGAAA--GCA-G-ACGTATCCTTCTTAATGGTCTTC----AATTTAATTGGATGCTGGTTTC-C--AG-TGA--TTGACAAAG--GTA-TTGAAACACCCG-CA-CCTTTTG-TTGGCC-AT--CACT-TCTTCACTTGTTTGCGGGTCAGTCCTGATAGTCT-CACCAGCTCGT--CTACTTCGCCGCCGGTGGGAT-ATGGGTACTGGGTGTGGCTCTGGTA-CCA------------ATTGTTT-AAGTACATTGGT------------------T--TCA--------------------TCCTC-TCT---TTTCTCT-TTGA-GATATTGCTTTGTATGAA-TGTATGTC--TGGTG---------------------------------T-AATAG-GACTGTT-GTTGCT-----AGGC--T-------------AGTTGGTAGA-TT-T-GAATGC-AATTTC---------Agt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TATACAGTGGAACAAAGTGCTGAAGAAGGTCTCCAATGTTTGATGATGAAGGCTTCAGTTCACTATGCAGCAATTCTGGAAATGTCTTTGAATTCTTGTTGAGTGATAGTTATGGTAATGGGACAGAGCCATCCAGGACAGTATATATAGCTGGTGGTGGACATGTTCTCTATTACCTGAGACTCCTGTCATGCCAACCTCCTCCTCACTTCTCTCCATAGAGCCAGCAATGGCAGTTCCTAAGATTGTTTTGGTTGTGCAGTGTATCCAGTATGCATCCAGCTAAATTAAATTCCTAGTAATTTGTTACCATGACACTATCAAAACATGTATAGAGCAGGCCAGCTTGTACAGTTAGACTTCCATACCTATAATTGGGTAATGATTAGAGCCTGTTGACAATTGAGGAGCCCAGGTGAGA
Unaligned ( gi|21 ): GTGGGAATTAGGCACCTGTAATTGTGTAATGATTAGTTTAATTGGATAATGGAGGAGCAAAGGT