lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111 11111111111111111111111111111111111111111111 11111111111111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1111111111111111111111111111111111111111111111111111111111111111111111111 22222222222222222222222222222222222222222222222222 11111111111111111111111
lowQualScore : 1 2 4 8888888888888888888888888888888 222 33333 11 1 1 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111 1 11 22 111 111111111111 222 1111 44444 11 11111111111111111111111111111111111111 3 2 55555555555555555 2222 33 44444 1 222 11 111 111 222 2 11 1 111111 777777777777777777777777777 2 11 11 222 1111 11111 5555555555555555 2 1 444444444444444 33333 22222 2 3333333 444444 222 33333333333333333333333333333333333333333333 11 4444444 2 00000000000000 22 333 11 222 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 33333333 8888888888888888888888888888888888888888888888888888888888888888888 4444444 2 55 2 44 5555555 1 3333 4 1 1 11 111 0000000000000000000000000000000000000000000000000000000000000000000000000 1 444444444444444444 2 22 1 333333333333333333 1 5555 33 1 33333333333333333333333333333333333333333333333333 11 22222222222 2 1 1 1111 22222 1 2222 11 111 1 222 11111111111111111111111 1 3333 11 1
lowQualScore : 6 8 6 6 6 0 5 5 2222222222222222222222222222222 333 5 5 7777 2 00000 00 7 2 66 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3 5 555 0 5 5 66 3 00 888 5 3 111 1 999999999999 3 222 9999 6 66666 33 3 44444444444444444444444444444444444444 3 3 0 88888888888888888 1111 66 44444 0 9 888 22 777 2 333 0 6 6 666 0 33 2 0 555555 888888888888888888888888888 2 9 33 22 000 4444 55555 6666666666666666 0 0 777777777777777 22222 2 3 00000 0 2222222 888888 777 44444444444444444444444444444444444444444444 6 88 4 6666666 6 0 22222222222222 66 555 22 222 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 6 44 22222222 7 0000000000000000000000000000000000000000000000000000000000000000000 5555555 0 55 4 0 3 6 88 33 4 4 88 0000000 3 7 7 3333 88 0 6 0 0 33 777 4444444444444444444444444444444444444444444444444444444444444444444444444 0 3 444444444444444444 7 2 33 0 55 111111111111111111 0 3 0000 5 11 0 88888888888888888888888888888888888888888888888888 22 3 3 33 77777777777 3 0 0 2 0 3333 66666 0 1111 33 777 3 3 0 777 00000000000000000000000 0 6666 88 3 4 5
lowQualScore : . . . . . . . . ............................... ... . . .... . ..... .. . . .. ............................................................................................ . . ... . . . .. . .. ... . . ... . ............ . ... .... . ..... .. . ...................................... . . . ................. .... .. ..... . . ... .. ... . ... . . . ... . .. . . ...... ........................... . . .. .. ... .... ..... ................ . . ............... ..... . . ..... . ....... ...... ... ............................................ . .. . ....... . . .............. .. ... .. ... ............................................................................................................................................................................................................................ . .. ........ . ................................................................... ....... . .. . . . . .. .. . . .. ....... . . . .... .. . . . . .. ... ......................................................................... . . .................. . . .. . .. .................. . . .... . .. . .................................................. .. . . .. ........... . . . . . .... ..... . .... .. ... . . . ... ....................... . .... .. . . .
lowQualScore : 0 0 2 7 7 0 7 7 9999999999999999999999999999999 999 0 0 0000 7 00000 66 8 7 11 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2 0 666 0 0 0 99 6 77 666 7 2 777 0 555555555555 5 555 8888 0 55555 88 2 22222222222222222222222222222222222222 2 8 0 88888888888888888 2222 22 55555 0 8 888 55 555 5 000 8 0 5 555 0 88 5 0 222222 555555555555555555555555555 0 8 88 00 222 5555 22222 2222222222222222 0 0 000000000000000 55555 5 5 88888 0 0000000 222222 888 33333333333333333333333333333333333333333333 0 00 0 5555555 0 0 55555555555555 00 000 00 555 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 00 77777777 3 3333333333333333333333333333333333333333333333333333333333333333333 5555555 0 00 0 0 0 0 55 00 0 0 00 7777777 3 3 3 0000 33 0 0 0 0 88 000 5555555555555555555555555555555555555555555555555555555555555555555555555 0 2 888888888888888888 5 5 88 0 88 555555555555555555 0 2 8888 0 00 0 88888888888888888888888888888888888888888888888888 22 2 2 22 55555555555 2 0 0 2 0 0000 22222 0 2222 22 000 2 2 0 555 55555555555555555555555 0 0000 55 0 0 0
consensus : AAGAGTC-ATTCTCTGT-AAGCA-TCAA-ACTGGC-TTGGAAACGGCAT-AT-TTCAGATTGCCCT-TATATTTTGTTAT-ATGA-T---AC---AACA-ATAAA-TCTAAAT-T--GTAGCACGTCTT-----AAATATTTT--AAAATGTTGTGTGT--CCAT--G-GT--A---A-A----T-GACA----CTTAACATTTCA-CG-------TG-T--ATG--GC-CA-TTCTCTCTAG---G--NC---A--CAAAAACA-TTTGTTT---TT-C-AA-C--ATAA-ATTGC--ACT-ATTATTTTT---CACATT----A-G-G---TATTTT-AATTTTT---GTTATACATGTTGT--TTTCTTGT--TCAC---AAAAATATGA--T---A---NAATAA--TTAAAAGTACT-ACAATGAATT-----------C--GNTCCTAA----TTAC-TTAAAATTAT-AGCTT-GCATCTTG-A-TGAG-AT---AACCGATACTTTCTTGTTTGGTA--TACAAAAA-CGCA--GGCAA-TT-A-T-AAGTCCATA--TGATGTACCGC-TTAATAT-TAGATT-AAAACCTG--TTCTAAA-GCA-TATAA--AAA--AAAATTG----GG-GT-GT----TATTACTTATGTAAG-AAAA------A-TNAAA--TGATATT-AAAATTTGTGCAAAAANTGATAG-ATTTAGTC------AAAAGC---TCGTTCACAGTTTTATCT-----CCC-TTGA---ATAA---GTCTACGTAAGTCACCGCTNNGCTTTGAACTGAGCGANTTTGCTGGCTGAAACAGTGAATAT-GGCAG-ATAACTTANGAATGCACACTCCCAAGTTTGCATCTTANTCTTGAA--TTGGAA-GTTTGATGTCACCACGAGCAT-CTTTGTTTTCCNTTGTTCAACTAGNACNTANAGAGCANAGAACGACCGATAGGNCTAGGGNTTGCTNNCTTTGNNAGCACCTTTGGCCCACACTNTGCACGNGCTTCGTCCAGATGTTNTTCTGTGNAAACTGGACAGANAA--CTTGCTT-CATCCT--GTG-TTTTAAA-CATTCA--AA--TTACGTTTAATATTT-GAACAGAA-CACTTTCACATTTTTATGAA---AANT----AATNTGC---TATC-CNTCA-A----TNACTGANAGAGATGAATNCANAGGTTCTCAGTGATCATCCCNGATNCTGATATTTATA--TNATTTTCANGAAGTGAGTTTGNTTT-ATTTNTAACANTNNGTAAAG-TAGC-TAAT-TTCTACT--T-ATGATTTACT-TCCACTTCAA-TAAAT-TTG--TTT--AAAAATAAT----AT-TCGT-ATGTNAA-AAATAAAC----TTCN-----ATAT-TTCAT--T-AT-TGTC-TCCA--T--TACGAAC-TTATT-A-----CAAAT----A-TTGAAAAC-AATTAAGGGGGC-ACAA-CTCTC--TCAAAAT-T-CAT-NGGGGT-GGATCTAAAAAAN-TCTTTCGTCTTGATTTT-C-AT-----AAAAAATAA-AANAA-AACNTTGAA---TGAA----------AGAAATAACAAGAA-CTTA---NAATTN--AATATTGATGAGA-TGAATGA-TTC-ATCAACGT-TTG-TTTA-TT----TTATT-TATCA--TTTCATA-GG--CGTAGGACTGGGTNTTGAA-----------TGGGGGGG-GGGGGGGGGGGCTAACTTTTNGANGTATTGACAA
Reference ( gi|1 ) : AAGA-TC-ATTCTCTGTTAAGCA-TCAA-ACTGGCGTTGGAAATGGCAT-AT-TTCAGATTGCCCT-TATATGTTTTTAT-ATGA-T---ACTA-AACA-GTAAA-TCTAAAT-T--GTAGCACGTCTT-----AAATATTTT--AAA-TGTTGTGTAT--CCATC-G-GT--A---A------T-GACA----TT---CAGTTCA-CA-------TG-T--ATG--GC-CA-TGCTCTCTAG---G--AC---A--CAAAAACA-TTTGTTT---TT-C-AA-C--ATAA-ATTGC--ACT-ATTATTTTT---CATATT----A-G-G---TATTTTTAATTTTT---ATTACA---GTTGT--TTTCTTGTT-TCACTTAAAAAATA-GA--T---A---TAAT----TTAAAAGTACTGACAATG-ATT-----------C--GTCCCTAA----TTACCTTAAAATTATGAGCTT-GCATCTTG-ATTGAG-AT---AACCGATACTTTCTTATTTGGTA--GACAAAAA-CGCA--GGCAA-TT-A-T-AAGT-CATA-GTAATGTACCAT-TTAATAGATAGATTAAAAACCTG--TTCTAAG-GCA-TATAA--AAA--AAAATTG----GG-G--G-----TATTA-TTATGTAAG-AAAA------A-TTAAG--TGATATTTAAAATTTGTGCAAAAATTG-TAG-ATTT-GTC------AAAAGT---TTGTTCACAGTTTTATCT-----CCCCTTGA---ATAG---GTCTACA------ACGGCTG-GCTTTGGACTGAATGATTTTGT----TGAAGCAG-GAATATGGGCAGCATAACTTGAGAATGCACAC---CAGATTTGCATTTTAATTTTGAAATTTGGAATGTTTGATGTCAC-ACG-GCATGCTTT-TTTTCCC--AT-CAAC-AGG-CCTAG---GCATAG-----CCA----GTCT-GGGC-----AGCTTTGTGA---CTTTTGG-C---ACTGTGCAC-AGCTTCGT-TAGATGTTT--CTGTTGAAACT-GACAGAAAAAACGCCCTTATATCCTTTGTGGTTTTAAAACAATCACAAAGCTT---TTCAATATTTGGAACAGAAACACCTTCACATTTTTATGAA---AAAT----AATATGC---TATC-GATCA-A----TAACTGAGAGAAAT---TACAAAGGTTC--AGTGATCATCACGGA-ACTG-TATTTATACTTTATTT-CATAAGGTGAGTTTACTTTTATTTTTAACAATTTGTAAA--TAGCATAAT-TTCTACT--TTATAATTTACTGTCCATTTCAA-TAAAT-TTG--TTT--AAAAATAA-----AT-T-GT-AT-TGAA-AAATAAAC---ATTCG-----ATAT-TTCAT--T-AT-TGTCATCCA--T--TATGAAC-TTATT-A-----CAAAT----AATTGAAAACCAATTAAGGGGG--ACAA-CTCTC--TCCAAAC-T-CAT-TGGGGT-GGATCTAAAAAAA-AATTTCATCTTGATTTT-C-AT--TTAAAAAAACAA-AACAA-AACTTTGAA--ATGAATGATTTGGCGAGGAATAACAAGAA-CTTA---AAATTT--AATATTG-TGAGA-TAAATGA-TTC-ATCAACGT-TTGATTTA-TT----TTATT-TATCA--TTTCATA-G---CGTAGGAC--GTTCTTTAA----------CTGGGGGGG-GGGGGGGGGGGCAAACTTTTTAAAGTATTTACAA
gi|2 : AAGAGTC-ATTCTCTGT-AAGCA-TCAA-ACTGGC-TTGGAAATTGGATTATATTCAGATTGCCCTATA-ATTTTGTTAT-ATGA-T---GCT--AACA--TAAG-TCTAAATCT--GTGTTACG-CTT-----AAATATTTA--AAA-TGTTGCGT-T--CTAT--G-GT--AAGCA------TGGACA----CTTAACATTTCA-CA-------TGTT--ATG--AC-C--TCCTCT-TAGTCCC--AC------CACAAACA------TT---TT-C-AA-C--AT-A-ATTGCGAGCT-ATAG--TTT---CACATT----A-G-AAGTTATTTT--ATTTTT---GTTATA---CATGC--TGTTTTG---TCAT---AAAAATATGA--TTAAA---TGATGAAATT-AAAGTACTTACAATGAATT-----------CCTGT-CCTAA----TTA-CTTAAAA-TAT-AGCTT-GCTTCTTG-A-TGAG-AC---AACCAA----TTTGTGTTT-GTA--TACAATAA-CGCAGGGGCAA-TT-A-T--AGT-GAC-----ATGTACC-C-GTAATCT-TAGATT-AAAACCTG--TTCTAAA-GC--CATTA--CAA--GAAATTG----GGTG--GT----TATTACTTATCTAAG-AAAA------ATTTAAA--TGATAT-----ATTTGTGCAAAAAATGATA--ATTA-GTC-------AAAGTCTGTCGTTCACAGTTGTTCCTGATAATCTATTGATGCATAAGACGTCTGC----------GTTGAACTTTGAAC--AGCGAATTTGTTGGCTGAAACAGTGAATAT-GGCAG-AT-ACTT-AGAATGCACAC---CAAGTTTGCATTT--ATTTTGAA-----------TTGATGT-AT-ATG-ATA----TT-TTTTCCA--GT-CAAT-AGGATCTAGAGAGCAGAG-----TGA----AGCT-AAAG-----TGCTTTGGCA------TTGGCC---ACTG-GCACGAGCTTCGT-CAGA--TTG--CTGTGTAAACTGGACAGAA
gi|12 : gtgtttAAGAGTCTATTCTCTTGTAAGCA-TCA---CTGGC-TTGGAAATGGCAT-TT-TTCAGATAGCCCT-GATATTGTTATAT-ATGATT---ACAT-AACATATAAG-TCTAAAT-T--GTAGCACGTC-T-----AAATATTTTTAAAA-TGTTGTGTTT--CCAT--G-GT--A---ttaatttgaaacagaacaaattcactttttaaaaatgcaaatgctctggtgtccttcaaatcataggacaaaaatttcaaaatcagtgatcattccagatattgtatttatattattttcatgaagtgagtttgcttatttataacattatgtaaaatagctaattctaattatgatttacttccacttcaataaatttgttaaaaataatatttgtatgtaaaaaaaaacttcatattcaatttatgtcctcatgtatgaacttatgacaatatttgaaaaacaattaagggggacaacttctcaattcataggggtgggatctaaaaaaatctttcgtctgattttcaataaaaaaaaacattgaagaataagcagaacttatgaatcaagatgagatgaatgattcaacaaccgttgtttattgtatttattatttcaggcgtaggactggttattgaaggggggggcgggggctaatgctaataattgcaatata
gi|10 : GG-TC-ACTCTCTGTCA-GCG-TCAA-ATTGTC-TTGAAAACGACAG-AT-TTCAGATTGCC--------------------------AC----ACA-ACACA-TCGAAAT-T--AGAGCTTGTCTTTAAA-AGATATTTC--AAAATGTTGTGTGC--ACATA-GTAC--A---A------G-GACAA---TT---TGTTTTA-TG-------TG-T--ATGTTGT-GACTTTTCTCCAG---A--TC---AATCAAAA-CA-TTTGTTTAA-TT-C-AA-CA-ATAA-caaacccttaacatttgctctaatacattatagacacgtaccctggtcac
gi|3 : cg-TC-ATTC-CTGT-AAGCAATCAACACTGGC-TTGGAAATGGCTT-AT-TTCA-ATAGCCCT----ATATTTGTATTATGA-TT--AC-A-TACC-ATAAA-TCTAAAT-T--GTAGCA-GTCT------AAATATTTTT-AAA-TGATGTGTGTTTCCATTAG-GT--A---AAACCCTT-AACA----TT-------TCATCA-------TG-T--ATG---C-CA---ATCTCTAG---GC-AC---A--CAAAAACA-TTTGTTT---TTTC-AA-A--ATAA--TTGC--ACT-ATTATTTTT---CATATT----A-GCG---TATTT--AATTTTTTCCAGTATATATGTTGT--TT-CTTGTCATTAC--AAGAAATATGA--T---A---AAATAA--TTAAAAGTACT-ACAATG-AAT-----------C--GGTCCTAA----TTAC-TTAAAAT-ATAAGCTGAGCATCTGGGATAGA--AT---AAC-GATA-TTTCTTGTTTGGTA--TACAAAAAACACA--G-CAA-TTTA-T-AAGTTCATA--TATGGTACCGTATTAAT---TAGATTTAAATCCGG--TCGTAAGAGCA--ATAATTAAAGTAATATTGCTTTGT-GTTG-----TATTA-TTATGTTAG-AAAATTATATA-TAAAT--TGATACTAATAATTTGTGCAAACATTA-TAGGATTT-ATCTAGTCAAAAAGC-----GTTCACAGTT--ATCT-----CC--TTGA---TTAG---ACTTATGTAAGTCACCACTCTGCTTTGAACTGAATGATTT-GC----TGAAACAG-GAA----------ATA-CTTACGAATGTACACTCCCAAGTTTGCATCTTATTCTTGAA--TTGGAA-GTTT-ATGTCACCACGAGCAT-CTTTGTTTTCCCTTATTCAACTAGT-CATAT----CATAGAACGACCGATAGGTCTAGGGCTTGCTATCTTTGTGAGCACCTTTGG-CCACATTTTGCAC-TGCTTCGTCTAG-TGTTTTTCTGTGGAAAC--GACAGATAA--CTTGCTT-CATCCT--GTG-TTTTAAA-CATTCA--AA--TTACGTTTAATATT--GAACAGATA-ACTTCTACATTTATATGAA---AATC----AAAATGCCA-TATCTGATCATA----TCACT
gi|14 : -TC-ATTCTCTGT-GAGCA-TCAA-ACTGGC-TTGGAAATGGCAT-GT-TTCAGATTGCCCT-TATATTTTGTTAT-ATGA-TTGCAC---AACA-CAAAG-TCTAAAT-T--GGAGCATCTCTT-----AAATATTAT--AGA-TAAAGTGCAT--
gi|6 : gagTCTCTGT-AAGCA-TCAA-ACTGGC-TTGGAAATGGCAT-AT-TTCAGATTGCCCT-TATATTTTGTTAT-ATGA-T---TGCATAACA--TAAAGTCTAAAT-T--GTAGCATGTCTT-----AAATATTTT--AAAATGTTGTGTTT--CCAT--G-GT--A---ACA----T-GACA----CTTAACATTTCA-CA-------TG-TT-ATG--AC-C--T-CCCTCTAG---A--CCC--A--TAAAAACA-TTTATTT---TT-C-AAAC--ATAA--TTGC--ACT-ATTATTTAT---CACATT----AAG-G---TATTTTATATTTTT---GTTATACATGCTGT--TTTCTTGT---CAT---AAAAATATGA--T---G---AAATAG--TTAAAAGTACT-AGAATG-ATT-----------C--AGTCCTAA----TTAC-TTAAAAT-AT-AGCTT-GCATCTTG-A-TGAGAAT---AATCAATATTGTCTTGTTCGGTA--TACAAAAA-CGCA--GGCAA-TT-ATT-AAGT-CATACATGAT---CCG---TAATAT-TAGATTAAAA--CTA--TTCTAAA-GCA-TAT-A--AAA--AAAATTG----GG-GT-G-----TATTATTTATGTAAG-AAAA---------TAAATTTGATA-TTAAATTTTGT-TAAAAAGTGATAG-ATTTAGTC------AAAAG----TCGTTCACAG--TTATCT------CCCTTGA---ATAA---GTCTAg
gi|11 : TTGAAAACGACAG-AT-TTCAGATTGCC--------------------A-T---AC---AACA-C---A-TCGAAAT-T--AGAGCTTGTCTTTACA-AGATATTTC--AAAATGTTGTGTGT--ACATA-ATAC--A---A------G-GACA----CT-----GTTTAATG-------TG-T--ATGTTGT-GACTTTTCTCCAG---A--TC---AATCAAAA-TA-TTTGTTT---TTTC-AA-C--AATA-ATTGA--AGT-ATTATTGAT---TACACT----ATG-G---T-TTTt
gi|9 : ACA-GCACA-TCTAAAT-TAAG-AGCTCGTCTTTTTTAAGATATTTC--AAT-TGGTGTGC-T--TCAT--G-GTAAA---A------G-GACACTGTTT---TAATGCA-TA-------TG-T--TTT--GA-C--TTTTGTCCAGAT-G--A----A--CAATAACATTTTGTTTTTGTT-CAAA-CA-ATAAGATTGA--AGT-ATTat
gi|8 : cagcttgcACGTCTT-----AAATATTTT--AAAATGTTGTGTAT--CCAT--G-GT--A---ACA----T-GACA----CCTAACATTTCA-CA-------TG-TTTATG--GC-CA-T--CCTCTAG---GCCAC---A--CAAAAACA-TTTGTTT---TT-C-AA-C--ATAA--TTGC--ACT-ATCATTTTT---CATATT----A-G-G---GTTTTTTAATTTTT---GTTATAC--ATTGTTGTTTCTTG---TCAC---AAAAATATGATTT---AAATTAAT----TTAAAGTTACT-ACAATGAATTTCAGTGTGAAAC--GTCCCTAAAAACTTA--TTGAAA-TAT-AGCTT-GC-TCTTG-A-TGAG-ATATAAACCGATACTTTTCTGTTTAGCATTAACAAAAACCGCA--GGCAATTT-A-TAAAGTCCATA--T-ATGTACCA--TTAATAATTAGATT-AAAACCTGGTTTCTAAA-GCATTATAA--AAA--A-----G----GG-G--GTTGGCTATTA-TTATGTAAGAAAAA------A-TAAAA--TGATATT--AAATTTGTGCAAAAATTG-TAC-ATTTAGTC------AAAAG----TCGTTCACAG--TTATCT-----Cccttgaatcactctagtttattaaattattgttcctatac
gi|13 : -G-GT--A---AACA---T-GACACTG-TT---TAATGCA-CAGAGTTGTTG-T--AC----CTCA-TCCATTCTAA---G--CCGCTA--CAAAAATA-TTTGTTT---TT-C-AA-CTAATTA-TTTGA--ACTAATCAGTTTTATACACATTCTAGA-G-G---TACTT
gi|2 : tttgctatATTTGAAACAGAA-CAAATTCAC-TTTTTAAAAATGCAAAT----GCTCTGG---TGTC-CTTCA-AATCATAG--GACAAAAAT---TTCAAAA--TC--AGTGATCATTCCAGATATTG-TATTTATA--TTATTTTCATGAAGTGAGTTTGCTT--ATTTATAACATTATGTAAAA-TAGC-TAAT-T-CTAAT--T-ATGATTTACT-TCCACTTCAA-TAAAT-TTG--TT---AAAAATAAT----AT-TTGT-AT-GTAA-AAAAAAAC----TTC------ATAT-TCAAT--T-TA-TGTCCTC-A--TG-TATGAAC-TTATG-A-----CAA-T----ATTTGAAAAACAATTAAGGGGG--ACAA-CT-TC--TC--AAT-T-CAT-AGGGGTGGGATCTAAAAAAA-TCTTTCGTC-TGATTTT-C------------AATAA-AAAAA-AACATTGAA-------------------GAATAAGCAGAA-CTTA---TGAATC--AAGA----TGAGA-TGAATGA-TTC-AACAACCG-TTG-TTTA-TT----GTATT-TATTA--TTTCA-G-G---CGTAGGACTGGTTATTGAA------------GGGGGGG-GCGGGGG
gi|7 : gtgtttaagagtcattctctgtaagcatcaaactggcttggaaattggattatattcagattgccctataattttgttatatgatgctaacataagtctaaatctgtgttacgcttaaatatttaaaatgttgcgttctatggtaagcatggacacttaacatttcacatgttatgacctcctcttagtcccaccacaaacattttcaacataattgcgagctatagtttcacattagaagttattttatttttgttatacatgctgttttgtcataaaaatatgattaaatgatgaaattaaagtacttacaatgaattcctgtcctaattacttaaaatatagcttgcttcttgatgagacaaccaatttgtgtttgtatacaataacgcaggggcaattatagtgacatgtacccgtaatcttagattaaaacctgttctaaagccattacaagaaattgggtggttattacttatctaagaaaaatttaaatgatatatttgtgcaaaaaatgataattagtcaaagtctgtcgttcacagttgttcctgataatctattgatgcataagacgtctgcgttgaactttgaacagcgaatttgttggctgaaacagtgaatatggcagatacttagaatgcacaccaagtttgcatttattttgaattgatgtatatgatattttttccagtcaataggatctagagagcagagtgaagctaaagtgctttggcattggccactggcacgagcttcgtcagattgctgtgtaaactggacagaattaTTTGAACAGAA-CACTCT-ACATTTTTATGAA---AACTTTCAAATGTACGTACATT-CCTCA-A----TTACTGAAAGAGATGAATACAT-GGTTCTCAGTGATCATCCCT-A-TCTGATATTTATA--TAATTT-CAGAAAGTGAGTTTGATTT-ATTTTTAACAATTAGTAAA---AGC-TAATATTCTACT--T-ATAATTTACT-TCCACTTCAA-TAAAA-TTG--TTTTAAAAGATAAT----AT-TTGT-AT-TTGA-AAATTAAC----TTCT------TAT-TTCAC----ATCTATC-TCCA--TCTTATGAAC-CTATTTA-----CAAAT----A-TTGAAAAC-AATTAAGGG----ACAAACTCT---TCCAATT-TTCAT---GGGT-GTATCTAAGATTC---TTTCATCT-GATTTT-CCATAATTAAAAAAAAAATAATAATAACTT-GAATGATGAAT--TTTA---AAAAATAACA-GAA-CTAA---AAATTA--AATATTG-TTAGAATAAATGA-TT--------GT-T--GTTTA-AT----TTGTT--ATCA--TT-CATA-GA--CCTAAGAC----TGTTT-------------TGAAGGGG-AGGGGGGAG----AACTTTTGAATGTATTGACAActaatgctaataattgcaatata
gi|4 : TAAAGCTACCTTAAT-TTCC-CTAATTA-GACTTACT-TCCACTTCAAATAAAT-TTGGGTTT--AAAAAATA-----ATAT-GT-ATGTAAACAGATAAAC----TTCC-----A-AG-TTCATCTT-AT--GTC--CCACTT--TATGAACCTTATT-------CAAAT----A-TTGAAAAC-AATTAAGGGGGCTACAA-CTCT---TCAAAATAT-CATAGGGGGT-GGATCTAAAAAACTTCTTTCGTC-TGATTTT-C-AT-----AAAAAAT---AAC----ATCTTGAA-----------------AGAAATAACAAGAAGCTTACGTATACTTAAAATATTGATGAGA-TGAATGA-TTC-ATCAACGTCTTGTTTTA-TTTTTATTATT-TATC---TTTCATAGG---CGTAGGACTGGGTTTTGAA----------AAGGGGGGG-GGGGGG
gi|5 : A-TAAATATTG--TTT--AAAAATAATATAAAT-CCGTTATGTAAA-AAATAAACTTCATACGCATTTATGTGCTCAT--TTAT-TGGAATACA--T--TACACAC-TT-TT-AGACAACAAATTCTCCATTAAACAC-----ACGAGGGC-ACAA-C-CTCGTTCAAAAT-T-CAA-TGGGGT-GGATC---AAAAA-TCTTTCTTCT--ATTTTAC-AT-----AAAATACAA-AA-----ACATTG-----TGAA---------AAGAAATA-CAAGA--CTTA---TAATTA--AATATTGATGAGA-TGAATGAATTCTATCAACGT-TTG-TTTATTT----TTATTATATTAATTTTCTTA-GGCTCGTTGGACT-GGATTTGAAAGCGAAAGCCCTGGAAAAGCGGGGCGGGGGGCTAAC--TTTGAAATATtctatacttctacattaatctttgacaatataaaaaaataaaaaaaccgcagaaaaaaccacaaaaaccatcaccacacacagaaggctaaccaaacccaaattggggtcgggggcaatattcttaataaatcactcctaaaaaagggggggggggcatattctattaatcactctcctaaaaagggacagggggggggggggggcaaacacctaatgtgtgtgtggggactttctaaatacatgtttgacaacttacaagcacccaataaaaaaaaagaagtctaaaacaacaaactgctgcaaactgatagcaaaaaaaaaaaaaatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttcacgcctctacccacccctcccatccccctggggccgagttcccgcgaagaattgaatccttcgggtcg
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): TAAAGCGAGTTTTAAAACCACCACACCTAGCATCAAACGAAATTTCATTGTATATTGTAATTGAGCCTAAACTTTTCTAGATGATGCTACCATACTAAATTAGTATCACGCTTAGTGTTTGAGA
Unaligned ( gi|16 ): GTTTTTTATTGGTAACATTATCATGTAAAGCGGCTAATTAATACACGTTCTACTTCGATCAAAACTATTTGCATAGTAAAGATAAGATATTTACTTAAAAAAAAACTTACATGTGCAA
Unaligned ( gi|17 ): ATGCATATGTTTTGACTTTTCTCCAGATCAACCAAAACATTTGTTTTTTCAACAATAATTGAAGTATTCTTGATCACTCTAGTTAATTTAATATTGTTCCTATACATG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 333 11 1111 1111 1111111 222222222 111111111111 11111111 22222222 22222222222222222 111 11111 1111 1111 111 3333 111 11 1111 1 444444444444 111 22 111 11 1 11 22222222222 3333 2222 11 111 11 11 22222222222 2 33333333 11 111111 1 222222 222222 111 1 55555555555555 11 44444 1 33333333333 1 333 1 1 333333333 2 2 1 11 111111111111111111111111111111111111111111111111111111111 333 11 5555 22 3333333333 22 222222 66666666666666666666666666 1 1 22222222 1 1 1 111 2222 333 111 111 1 44444444444444 22 2 11 222 11111 22 1111 1111111111 333333 1 33333333333333333 111111111 11 22 222222 22222 111 11 111 22 22222222222 88888888888888888888888888888888888888888 11111 11 1111 1111 11 6666666666666666 111 2222
lowQualScore : 6 5 5 5 5 5 2 5 5 111 5 66666 111 11 4 1111 4 4 66 4 1 7777 4 4444444 99 55 99 4 888888888 111111111111 4 66666666 8 66 55555555 0 99999999999999999 4 4 222 8 8 44444 4 777 4 0 888 777 3333 8 99999999 0 5 5 5 2222 000 6 0 66 9999 444 8 0 11 1 3 7777 8 8 8 0 666666666666 1 8 444 88 88 8 6 8 8 8 444 0 8 3 11 6 11 8 8 8 8 0 66666666666 8 1111 2222 8 3 11 8 8 222 6 11 11 6 88888888888 3 8 11111111 1 11 222222 1 0 000000 0 888888 666 0 8 5 3 6 33333333333333 55 7 11 1 88888 5 99999999999 4 777 2 1 2 222222222 6 6 3 3 3 44 222222222222222222222222222222222222222222222222222222222 555 00 2222 88 44 4444444444 1 22 888888 77777777777777777777777777 3 3 55555555 3 0 0 0 1 6 3 777 1 1111 1 111 111 111 1 0 1 0 11111111111111 77 11 3 88 1 7 7 11 111 3 1 1 99999 11 8 8 8 2222 88 3 8 3 6 99 6 7777777777 6 99 222222 6 0 1 6 7 6 11111111111111111 555555555 99 22 8 2 8 88 000000 0 88888 444 8 0 88 0 444 5 8 8 8 8 777 1 8 1 11 66666666666 2 88888888888888888888888888888888888888888 0 5 88 88888 1 88 6 8 8 1 33 8 8 8 7777 0 8 2222 6 11 55 3 8 9999999999999999 8 1 8 222 77 1111
lowQualScore : . . . . . . . . . ... . ..... ... .. . .... . . .. . . .... . ....... .. .. .. . ......... ............ . ........ . .. ........ . ................. . . ... . . ..... . ... . . ... ... .... . ........ . . . . .... ... . . .. .... ... . . .. . . .... . . . . ............ . . ... .. .. . . . . . ... . . . .. . .. . . . . . ........... . .... .... . . .. . . ... . .. .. . ........... . . ........ . .. ...... . . ...... . ...... ... . . . . . .............. .. . .. . ..... . ........... . ... . . . ......... . . . . . .. ......................................................... ... .. .... .. .. .......... . .. ...... .......................... . . ........ . . . . . . . ... . .... . ... ... ... . . . . .............. .. .. . .. . . . .. ... . . . ..... .. . . . .... .. . . . . .. . .......... . .. ...... . . . . . . ................. ......... .. .. . . . .. ...... . ..... ... . . .. . ... . . . . . ... . . . .. ........... . ......................................... . . .. ..... . .. . . . . .. . . . .... . . .... . .. .. . . ................ . . . ... .. ....
lowQualScore : 7 7 7 7 7 0 0 0 0 888 0 44444 222 99 4 3333 4 4 11 4 4 0000 0 4444444 11 55 55 0 333333333 888888888888 4 99999999 9 11 88888888 3 77777777777777777 0 0 555 0 0 22222 0 222 4 8 444 888 9999 9 99999999 4 0 7 7 1111 000 7 8 44 4444 000 0 8 00 0 8 0000 0 0 0 6 888888888888 0 0 000 44 88 0 0 0 0 0 000 8 2 2 00 0 00 0 0 0 0 8 22222222222 0 4444 2222 0 2 00 0 0 666 0 00 00 0 22222222222 2 0 88888888 0 00 222222 0 6 888888 8 000000 888 8 0 0 2 5 44444444444444 00 3 33 0 00000 3 77777777777 0 000 0 0 0 777777777 7 7 3 7 3 00 777777777777777777777777777777777777777777777777777777777 000 33 0000 33 33 7777777777 0 33 777777 33333333333333333333333333 3 3 88888888 2 0 0 0 2 5 2 555 0 2222 0 222 222 000 0 0 0 7 77777777777777 77 33 7 33 0 3 3 77 000 2 0 0 55555 22 0 0 0 0000 88 8 0 2 7 22 7 8888888888 7 22 000000 7 8 0 7 3 7 55555555555555555 000000000 88 00 0 8 0 88 888888 8 00000 222 0 8 00 8 222 6 0 8 0 0 000 0 0 4 22 44444444444 2 22222222222222222222222222222222222222222 8 6 88 00000 0 88 0 0 0 0 66 0 0 0 0000 8 0 6666 0 00 88 2 8 2222222222222222 0 0 0 000 55 2222
consensus : AAGAGTC-ATTCTCT-GT-AAGCA-TCAA-ACTGGC-TTGGAAATGGCA-TAT-TTCAGATTGCCCTTAT-ATTTTGTTATATGATT-CAC--A-ACA-ATAAA-TCTAAAT-T--GTAGCACGTCTT----AAATA-TTTTAAAATGTT-------GTGTG-T--CCAT--GGT-A-A--A--T-GACAC----T---TAACATTTCA-CA-------TG-T--ATG--GC-CA-TTCTCTCCAG--G-C-C---A--CA--AAAACA-TTTG-TTT---TT-C-AAC--ATNA-ATTGC--ACT-ATTATTTN--T---CACATT----A-G-G---TA-TTTTA-AT-TT-TT----GT---TATACA-TGTTGTTTTCTTG-T--TCAC---AA-AAATATGA--TAAAATAATTA----AAAG-TAC-T-ACAATGAATT-----------CGGTCCTAATTA-CTTA---AAAT-TAT-AGCTT-GCATCTTG-A-TGAG-AT---AACCGATACTTTCTTGTTTGGTAT--ACAAAAA-CGCA--GGCAA-TT-A-T-AAGTC-CATA-TG--ATG-TACCGT-TTAAT-AT-TAGATT-AAAACCTG--TTC-TAA-AGCA-TATAA--AAA--AAAATTGGG--GT--GTT--ATTA-TTATGTAAG-AAAA------A-TTAAA--TGATA-TTAA-AATTTGTGCAAAAATTGATAG-----ATTTAGTCAAAA-GC--TCGTTCACAGTTTTATCT-CCCTTGAATAGGTCTA------CGTAA---GTCACCGCT-NGCTTTGAACTGAACGATTTT----GCTGAAACAG-GAATAT-GGCAG-AT-ACTTA-GAATGCACA---CCAAGTTTGCATCTTATTCTTGAA--TTGGAA-GTTTGATGTCA-CACG-GCAT-CTTT-TTTTCCA--G-TCAACTAGG-CCTAG---GCATAG--CGACC---AGGTCTAGGGC-TG--A-CTTTGTG-GCACCTTTGGC---CACTGTGCAC-AGCTTCGT-TAGATGT--TTCTGTGGAAACT-GACAG--A--TAACTCG---C--------TT-CATCC--TGT-GTTTT-AAACATTCA-AA---TTACGTTCAATATTT-GAA-CAG-AACACTTTCACATTTTTATGAA---AANT----AATATGC---TATCC-NTCA-A-TCAC-TGANAGAAAT---TACAAAGGT--TCAGTGATCATCCCGGATACTG-TATTTATA--TTATTTTCATAAAGTGAGTTTG-NTTTATTTNTAACANTNT---GTAAAG-TAGC-T-AAT-TTC--TAC-TTATGATTTACT-TCCACTTCAA-TAA--AT-TTG--T-T--T--AAAAA-TA--ATAT----TCGT-ATGTAAA-AAATAAAC-TTCCATA-----TT------TCAT--T-AT-TGTCATCCA--T-TATGAAC-TTA-TTA-----CAAAT-----ATT--GAAAA-CAATTAAGGGGGC-ACAACTCTC--TCAAAAT-TCATNGGGG-T-GGATCTAAAAAAAT-CTTTCGTCTTGATTTT-CAT---A---AAAAACAAAATAA----AACNTTG-AATGA--------A----------A-GAAATAACAAGAA-CTTAN----AATTAAA-TATTGATGAGATGAATG-ATTC-ATCAACGT-TTG-TTT-A-TTTT----ATT-TATCA--TTTCATAGG--CGTAGGACTGGNTTTTGAA-----------TGGGGGGG-GGGGGGGGGGGCTA-ACTTTTNAANGTA----TTGACAA
Reference ( family-6543 ) : AAGAGTC-ATTCTCT-GT-AAGCA-TCAA-ACTGGC-TTGGAAACGGCA-TAT-TTCAGATTGCCCTTAT-ATTTTGTTATATGAT---AC--A-ACA-ATAAA-TCTAAAT-T--GTAGCACGTCTT----AAATA-TTTTAAAATGTT-------GTGTG-T--CCAT--GGT-A-A--A--T-GACAC----T---TAACATTTCA-CG-------TG-T--ATG--GC-CA-TTCTCTCTAG--G-N-C---A--CA--AAAACA-TTTG-TTT---TT-C-AAC--ATAA-ATTGC--ACT-ATTATTTT--T---CACATT----A-G-G---TA-TTTTA-AT-TT-TT----GT---TATACA-TGTTGTTTTCTTG-T--TCAC---AA-AAATATGA--TANAATAATTA----AAAG-TAC-T-ACAATGAATT-----------CGNTCCTAATTA-CTTA---AAAT-TAT-AGCTT-GCATCTTG-A-TGAG-AT---AACCGATACTTTCTTGTTTGGTAT--ACAAAAA-CGCA--GGCAA-TT-A-T-AAGTC-CATA-TG--ATG-TACCGC-TTAAT-AT-TAGATT-AAAACCTG--TTC-TAA-AGCA-TATAA--AAA--AAAATTGGG--GT--GTT--ATTACTTATGTAAG-AAAA------A-TNAAA--TGATA-TTAA-AATTTGTGCAAAAANTGATAG-----ATTTAGTCAAAA-GC--TCGTTCACAGTTTTATCT-CCCTTGAATAAGTCTA------CGTAA---GTCACCGCTNNGCTTTGAACTGAGCGANTTTGCTGGCTGAAACAGTGAATAT-GGCAG-ATAACTTANGAATGCACACTCCCAAGTTTGCATCTTANTCTTGAA--TTGGAA-GTTTGATGTCACCACGAGCAT-CTTTGTTTTCCNTTGTTCAACTAGNACNTANAGAGCANAGAACGACCGATAGGNCTAGGGNTTGCTNNCTTTGNNAGCACCTTTGGCCCACACTNTGCACGNGCTTCGTCCAGATGTTNTTCTGTGNAAACTGGACAG--A--NAACTTG---C--------TT-CATCC--TGT-GTTTT-AAACATTCA-AA---TTACGTTTAATATTT-GAA-CAG-AACACTTTCACATTTTTATGAA---AANT----AATNTGC---TATCC-NTCA-A-TNAC-TGANAGAGATGAATNCANAGGTTCTCAGTGATCATCCCNGATNCTGATATTTATA--TNATTTTCANGAAGTGAGTTTG-NTTTATTTNTAACANTNN---GTAAAG-TAGC-T-AAT-TTC--TAC-TTATGATTTACT-TCCACTTCAA-TAA--AT-TTG--T-T--T--AAAAA-TA--ATAT----TCGT-ATGTNAA-AAATAAAC-TTCNATA-----TT------TCAT--T-AT-TGTC-TCCA--T-TACGAAC-TTA-TTA-----CAAAT-----ATT--GAAAA-CAATTAAGGGGGC-ACAACTCTC--TCAAAAT-TCATNGGGG-T-GGATCTAAAAAANT-CTTTCGTCTTGATTTT-CAT---A---AAAAATAAAANAA----AACNTTG-AATGA--------A----------A-GAAATAACAAGAA-CTTAN----AATTNAA-TATTGATGAGATGAATG-ATTC-ATCAACGT-TTG-TTT-A-TTTT----ATT-TATCA--TTTCATAGG--CGTAGGACTGGGTNTTGAA-----------TGGGGGGG-GGGGGGGGGGGCTA-ACTTTTNGANGTA----TTGACAA
gi|1 : AAGA-TC-ATTCTCT-GTTAAGCA-TCAA-ACTGGCGTTGGAAATGGCA-TAT-TTCAGATTGCCCTTAT-ATGTTTTTATATGAT---ACTAA-ACA-GTAAA-TCTAAAT-T--GTAGCACGTCTT----AAATA-TTTTAAA-TGTT-------GTGTA-T--CCATC-GGT-A-A-----T-GACAT----T------CAGTTCA-CA-------TG-T--ATG--GC-CA-TGCTCTCTAG--G-A-C---A--CA--AAAACA-TTTG-TTT---TT-C-AAC--ATAA-ATTGC--ACT-ATTATTTT--T---CATATT----A-G-G---TATTTTTA-AT-TT-TT----AT---TACA----GTTGTTTTCTTGTT--TCACTTAAA-AAATA-GA--TATAAT--TTA----AAAG-TAC-TGACAATG-ATT-----------CGTCCCTAATTACCTTA---AAAT-TATGAGCTT-GCATCTTG-ATTGAG-AT---AACCGATACTTTCTTATTTGGTAG--ACAAAAA-CGCA--GGCAA-TT-A-T-AAGT--CATAGTA--ATG-TACCAT-TTAAT-AGATAGATTAAAAACCTG--TTC-TAA-GGCA-TATAA--AAA--AAAATTGGG--G---G-T--ATTA-TTATGTAAG-AAAA------A-TTAAG--TGATATTTAA-AATTTGTGCAAAAATTG-TAG-----ATTT-GTCAAAA-GT--TTGTTCACAGTTTTATCTCCCCTTGAATAGGTCTA------CA---------ACGGCT-GGCTTTGGACTGAATGATTTT----GTTGAAGCAG-GAATATGGGCAGCATAACTTGAGAATGCACA---CCAGATTTGCATTTTAATTTTGAAATTTGGAATGTTTGATGTCA-CACG-GCATGCTTTTTTTCCCA----TCAAC-AGG-CCTAG---GCATAG-----CC----AGTCT-GGGC-----AGCTTTGTG---ACTTTTGG----CACTGTGCAC-AGCTTCGT-TAGATGT--TTCTGTTGAAACT-GACAGAAA--AAACGCC---C--------TTATATCCTTTGTGGTTTTAAAACAATCACAAAGCTT---TTCAATATTTGGAA-CAGAAACACCTTCACATTTTTATGAA---AAAT----AATATGC---TATCG-ATCA-A-TAAC-TGAGAGAAAT---TACAAAGGT--TCAGTGATCATCACGGA-ACTG-TATTTATACTTTA-TTTCATAAGGTGAGTTTACTTTTATTTTTAACAATTT---GTAAA--TAGCAT-AAT-TTC--TACTTTATAATTTACTGTCCATTTCAA-TAA--AT-TTG--T-T--T--AAAAA-TA--A-AT----T-GT-AT-TGAA-AAATAAACATTCGATA-----TT------TCAT--T-AT-TGTCATCCA--T-TATGAAC-TTA-TTA-----CAAATA----ATT--GAAAACCAATTAAGGGGG--ACAACTCTC--TCCAAAC-TCATTGGGG-T-GGATCTAAAAAAAA-ATTTCATCTTGATTTT-CATTTAA---AAAAACAAAACAA----AACTTTGAAATGA--------ATGATTTGGCGA-GGAATAACAAGAA-CTTAA----AATTTAA-TATTG-TGAGATAAATG-ATTC-ATCAACGT-TTGATTT-A-TTTT----ATT-TATCA--TTTCATA-G--CGTAGGAC--GTTCTTTAAC----------TGGGGGGG-GGGGGGGGGGGCAA-ACTTTTTAAAGTA----TTTACAA
gi|10 : GGGTC-ACTCTCT-GT-CAGCG-TCAA-ATTGTC-TTGAAAACGACA-GAT-TTCAGATTGCC------------------------AC--A--CA-ACACA-TCGAAAT-T--AGAGCTTGTCTTTAAAAGATA-TTTCAAAATGTT-------GTGTG-C--ACAT--AGT-ACA--A--G-GACAA----T---T--TGTTTTA-TG-------TG-T--ATGTTGT-GACTTTTCTCCAG--A-T-C---AATC---AAAACA-TTTG-TTTAA-TT-C-AACA-ATAA-
gi|11 : c-TTGAAAACGACA-GAT-TTCAGATTGCC-------------------AT---AC--A-ACA-C---A-TCGAAAT-T--AGAGCTTGTCTTTACAAGATA-TTTCAAAATGTT-------GTGTG-T--ACAT--AAT-ACA--A--G-GACAC----T-------GTTTAA-TG-------TG-T--ATGTTGT-GACTTTTCTCCAG--A-T-C---AATC---AAAATA-TTTGTTTT---TT-C-AAC--AATA-ATTGA--AGT-ATTATTGA--T---TACACT----ATG-G------TTTTA-
gi|12 : AAGAGTCTATTCTCTTGT-AAGCA-TCA---CTGGC-TTGGAAATGGCA-TTT-TTCAGATAGCCCTGAT-ATTGTTATATATGATTACAT--A-ACATATAAG-TCTAAAT-T--GTAGCACGTC-T----AAATATTTTTAAAATGTT-------GTGTT-T--CCAT--GGT-A-C--A----AACCC----T---TAACATTTt
gi|13 : --CTAT--GGT-A-A--ACAT-GACAC----TGTTTAA---TGCA-CAGAGTTGTTG-T--AC----CTCA-TCCATTCTAA--G-C-CGCTA--CA--AAAATA-TTTG-TTT---TT-C-AACTAATTA-TTTGA--ACTAATCAGTTT--TATACACATTCTAGA-G-G---TA-CTTgctctaatacattatagacacgtaccctggtcac
gi|14 : tttgGAGTC-ATTCTCT-GT-GAGCA-TCAA-ACTGGC-TTGGAAATGGCA-TGT-TTCAGATTGCCCTTAT-ATTTTGTTATATGATTGCAC--A-ACA-CAAAG-TCTAAAT-T--GGAGCATCTCTT----AAATA-TTATAGA
gi|16 : GTTT---TTTATTGGTAACATTATCATGTAAAG-CGGC-T-AAT-TAA--TAC---ACGTTCTACT-TCGA--TCAA--AACTAT-TTG--CATAGT--AAAGA-TAAGATAT----T--T-ACTTAAA-AAA-AAAC-TTACATG-----Ttaaagtgcatg
gi|17 : -TTTTCTCCAG--A-T-C---AA-CC--AAAACA-TTTG-TTT---TTTC-AAC--AATA-ATTGA--AGT-ATTCTTGA--T---CACTCT----A-G-T---TA-ATTTA-ATATTGTT----CC---TATACA-TGgcaa
gi|2 : atgcatatgttttgacAAGAGTC-ATTCTCT-GT-AAGCA-TCAA-ACTGGC-TTGGAAATTGGATTATATTCAGATTGCCC-TATAATTTTGTTATATGAT---GCT-A-AC--ATAAG-TCTAAATCT--GTGTTACG-CTT----AAATA--TTTAAAATGTT-------GCGT--T--CTAT--GGT-A-AGCA--TGGACAC----T---TAACATTTCA-CA-------TGTT--ATG--AC-C--TCCTCT-TAGT-C-C-C---AC-CA--CAAACA-------TT---TT-C-AAC--AT-A-ATTGCGAGCT-ATAG--TT--T---CACATT----A-G-AAGTTA-TTTT--AT-TT-TT----GT---TATACA-TGCTGTT---TTG----TCAT---AA-AAATATGA--TTAAATGATGAAATTAAAG-TACTT-ACAATGAATTC----------CTGTCCTAATTA-CTTA---AAA--TAT-AGCTT-GCTTCTTG-A-TGAG-AC---AACCAA----TTTGTGTTT-GTAT--ACAATAA-CGCAGGGGCAA-TT-A-T-A--------G-TGACATG-TACC-C-GTAAT-CT-TAGATT-AAAACCTG--TTC-TAA-AGC--CATTA--CAA--GAAATTGGG--TG--GTT--ATTACTTATCTAAG-AAAA------ATTTAAA--TGATA-T-----ATTTGTGCAAAAAATGATAA-------TTAGTCAAAG-TCTGTCGTTCACAGTTGT---T-CC--TG-ATAA-TCTATTGATGCATAAGACGTCTGCGTTGAACTTTGAAC--AGCGAATTTGTTGGCTGAAACAGTGAATAT-GGCAG-AT-ACTTA-GAATGCACA---CCAAGTTTGCAT-TTATT-TTGAA-----------TTGATGT-A-TATG---AT-ATT--TTTTCCA--G-TCAA-TAGGATCTAGAGAGCAGAG--TGA-----AG--CTAAAG--TG----CTTTG---GCA---TTGGC---CACTG-GCACGAGCTTCGT-CAGAT----TGCTGTGTAAACTGGACAG--AATTAATTTGAAACAGAACAAATT-CA--C--T----TTTT-AAAAATGCA-AA---T
gi|2 : gtgtttATTT-GAAACAG-AACAAATTCAC-TTTTTAAAAATGCAAAT----GCTCTGG---TGTCC-TTCA-AATCATAGGACAAAAAT---TTCAAAA----TCAGTGATCATTCCAGATATTG-TATTTATA--TTATTTTCATGAAGTGAGTTTG-CTT-ATTTATAACATTAT---GTAAAA-TAGC-T-AAT-T-C--TAA-TTATGATTTACT-TCCACTTCAA-TAA--AT-TTG----T--T--AAAAA-TA--ATAT----TTGT-ATGTAAA-AAA-AAAC-TTC-ATA-----TT------CAAT--T-TA-TGTC-CTCA--TGTATGAAC-TTA-TGA-----C-AAT-----ATTTGAAAAA-CAATTAAGGGGG--ACAACT-TC--TC--AAT-TCATAGGGG-TGGGATCTAAAAAAAT-CTTTCGTC-TGATTTT-C------------AATAAAAAAA----AACATTG-AA-------------------------GAATAAGCAGAA-CTTAT----GAATCAA-----GATGAGATGAATG-ATTC-AACAACCG-TTG-TTT-A-TTGT----ATT-TATTA--TTTC--AGG--CGTAGGACTGGTTATTGAA----------------GGG-GGGGGCGGGGGCTA-Agctctggtgtccttcaaatcataggacaaaaatttcaaaatcagtgatcattccagatattgtatttatattattttcatgaagtgagtttgcttatttataacattatgtaaaatagctaattctaattatgatttacttccacttcaataaatttgttaaaaataatatttgtatgtaaaaaaaaacttcatattcaatttatgtcctcatgtatgaacttatgacaatatttgaaaaacaattaagggggacaacttctcaattcataggggtgggatctaaaaaaatctttcgtctgattttcaataaaaaaaaacattgaagaataagcagaacttatgaatcaagatgagatgaatgattcaacaaccgttgtttattgtatttattatttcaggcgtaggactggttattgaaggggggggcgggggctaatgctaataattgcaatata
gi|3 : gtgtttaagagtcattctctgtaagcatcaaactggcttggaaattggattatattcagattgccctataattttgttatatgatgctaacataagtctaaatctgtgttacgcttaaatatttaaaatgttgcgttctatggtaagcatggacacttaacatttcacatgttatgacctcctcttagtcccaccacaaacattttcaacataattgcgagctatagtttcacattagaagttattttatttttgttatacatgctgttttgtcataaaaatatgattaaatgatgaaattaaagtacttacaatgaattcctgtcctaattacttaaaatatagcttgcttcttgatgagacaaccaatttgtgtttgtatacaataacgcaggggcaattatagtgacatgtacccgtaatcttagattaaaacctgttctaaagccattacaagaaattgggtggttattacttatctaagaaaaatttaaatgatatatttgtgcaaaaaatgataattagtcaaagtctgtcgttcacagttgttcctgataatctattgatgcataagacgtctgcgttgaactttgaacagcgaatttgttggctgaaacagtgaatatggcagatacttagaatgcacaccaagtttgcatttattttgaattgatgtatatgatattttttccagtcaataggatctagagagcagagtgaagctaaagtgctttggcattggccactggcacgagcttcgtcagattgctgtgtaaactggacagaattaTC-ATTC-CT-GT-AAGCAATCAACACTGGC-TTGGAAATGGCT-TAT-TTCA-ATAGCCCT-AT-ATTT-GTATTATGATT--AC--ATACC-ATAAA-TCTAAAT-T--GTAGCA-GTCT-----AAATA-TTTTTAAATGAT-------GTGTG-TTTCCATTAGGT-A-A--A-----ACCC----T---TAACATTTCATCA-------TG-T--ATG---C-CA---ATCTCTAG--G-CAC---A--CA--AAAACA-TTTG-TTT---TTTC-AAA--ATAA--TTGC--ACT-ATTATTTT--T---CATATT----A-GCG---TA-TTT-A-AT-TT-TTTCCAGT----ATATA-TGTTGTTT-CTTG-TCATTAC---AAGAAATATGA--TAAAATAATTA----AAAG-TAC-T-ACAATGAAT------------CGGTCCTAATTA-CTTA---AAATATA--AGCTGAGCATCTGGGA-TAGA-AT---AAC-GATA-TTTCTTGTTTGGTAT--ACAAAAAACACA--G-CAA-TTTA-T-AAGTT-CATA-T---ATGGTACCGTATTAAT----TAGATT-TAAATCCG--GTCGTAAGAGCA--ATAATTAAAGTAATATTGCTTTGT--GTTGTATTA-TTATGTTAG-AAAATTATATA-TAAAT--TGATA-CTAATAATTTGTGCAAACATT-ATAGGATTTATCTAGTCAAAAAGC----GTTCACAGTT--ATCT-CC-TTGATTAGACTTA------TGTAA---GTCACCACTCTGCTTTGAACTGAATGATTT-----GCTGAAACAGGAAATA------------CTTACGAATGTACACTCCCAAGTTTGCATCTTATTCTTGAA--TTGGAA-GTTT-ATGTCACCACGAGCAT-CTTTGTTTTCCCTTATTCAACTAGT-CATAT----CATAGAACGACCGATAGGTCTAGGGCTTGCTATCTTTGTGAGCACCTTTGGCC-ACATTTTGCAC-TGCTTCGTCTAG-TGTTTTTCTGTGGAAAC--GACAG--A--TAACTTG---C--------TT-CATCC--TGT-GTTTT-AAACATTCA-AA---TTACGTTTAATA-TT-GAA-CAG-ATAACTTCTACATTTATATGAA---AATC----AAAATGCCA-TATCTGATCATA-TCAC-Ttgctaataattgcaatata
gi|4 : TAAAGCTACC-TTAAT-TTCCCTAA-TTA-GACTTACT-TCCACTTCAAATAA--AT-TTGGGT-T--T--AAAAAATA--ATAT------GT-ATGTAAACAGATAAAC-TTCCA-A-----GT------TCATCTT-AT--GTC--CCACTT-TATGAACCTTA-TT------CAAAT-----ATT--GAAAA-CAATTAAGGGGGCTACAACTCT---TCAAAATATCATAGGGGGT-GGATCTAAAAAACTTCTTTCGTCT-GATTTT-CAT---A---AAAAATAACAT--------CTT------GA--------A----------A-GAAATAACAAGAAGCTTACGTATACTTAAAATATTGATGAGATGAATG-ATTC-ATCAACGTCTTG-TTTTA-TTTTTATTATT-TATC---TTTCATAGG--CGTAGGACTGGGTTTTGAA--------------AAGGG-GGGGGGGGGGTCTATACTTCTACAT-TAATCTTTGACAA
gi|5 : A-TAA--ATATTG--T-T--T--AAAAA-TA--ATATAAATCCGTTATGTAAA-AAATAAAC-TTC-ATACGCATTTATGTGCTCAT--TTAT-TGGAATACA--T-TACACAC-TT--TTAGACAACAAATTCTCCATT----AAA-CA--CACGAGGGC-ACAAC-CTCGTTCAAAAT-TCAATGGGG-T-GGATC---AAAAAT-CTTTCTTCT--ATTTTACAT---A---AAATACAAAA--------ACATTG---TGA--------A----------AAGAAATA-CAAGA--CTTAT----AATTAAA-TATTGATGAGATGAATGAATTCTATCAACGT-TTG-TTT-ATTTTT----ATTATATTAATTTTCTTAGGCTCGTTGGACTGGAT-TTGAAAGCGAAAGCCCTGGAAAAGCGGGGCGGGGGGCTA-ACTTT--GAAATA----tataaaaaaataaaaaaaccgcagaaaaaaccacaaaaaccatcaccacacacagaaggctaaccaaacccaaattggggtcgggggcaatattcttaataaatcactcctaaaaaagggggggggggcatattctattaatcactctcctaaaaagggacagggggggggggggggcaaacacctaatgtgtgtgtggggactttctaaatacatgtttgacaacttacaagcacccaataaaaaaaaagaagtctaaaacaacaaactgctgcaaactgatagcaaaaaaaaaaaaaatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttcacgcctctacccacccctcccatccccctggggccgagttcccgcgaagaattgaatccttcgggtcg
gi|6 : aataaaactcttacacatatatgcatTCTCT-GT-AAGCA-TCAA-ACTGGC-TTGGAAATGGCA-TAT-TTCAGATTGCCCTTAT-ATTTTGTTATATGATTGCAT--A-AC--ATAAAGTCTAAAT-T--GTAGCATGTCTT----AAATA-TTTTAAAATGTT-------GTGTT-T--CCAT--GGT-A-AC-A--T-GACAC----T---TAACATTTCA-CA-------TGTT--ATG--AC-C---TCCCTCTAG--ACC-C---A--TA--AAAACA-TTTA-TTT---TT-CAAAC--AT-A-ATTGC--ACT-ATTATTTA--T---CACATTA---A-G-G---TA-TTTTATAT-TT-TT----GT---TATACA-TGCTGTTTTCTTG----TCAT---AA-AAATATGA--TGAAATAGTTA----AAAG-TAC-T-AGAATG-ATT-----------CAGTCCTAATTA-CTTA---AAA--TAT-AGCTT-GCATCTTG-A-TGAGAAT---AATCAATATTGTCTTGTTCGGTAT--ACAAAAA-CGCA--GGCAA-TT-ATT-AAGTCATACA-TG--AT----CCG---TAAT-AT-TAGATT-AAAA-CTA--TTC-TAA-AGCA-TAT-A--AAA--AAAATTGGG--GT--G-T--ATTATTTATGTAAG-AAAA---------TAAATTTGATA-TTAA-ATTTTGT-TAAAAAGTGATAG-----ATTTAGTCAAAA-G---TCGTTCACAG--TTATCT-CCCTTGAATAAGTCTA------aaattaattctcacatatacaaaaaaaagaacaaaaaaaacaccactgcaatcacacaaagaggctacccaaaaccacaaaatgtgagacaaaccggtaggaagggacaattactatagatactaaaggagagaggggggaggccggcactacaataaattgatgtgtggagagaacttactaagtaatgtgaaaacttaaaagcaaacaaataaaatgaaaagcacaagacatgctaatacacaatgactgcgaacccagtaagtaaaagcaccaaaaaaaaaaaatagcatccaccataacaacacagcagagataggttacggacaacccataacaactagaacaacaccccccgcccctacataccatcttgttagaggttcccctccccctggggcctctgagttccggaaaaagattgaacttccgggttcaag
gi|7 : TTT-GAA-CAG-AACACTCT-ACATTTTTATGAA---AACTTTCAAATGTACGTACATTC-CTCA-A-TTAC-TGAAAGAGATGAATACAT-GGTTCTCAGTGATCATCCCT-AT-CTGATATTTATA--TAATTT-CAGAAAGTGAGTTTG-ATTTATTTTTAACAATTA---GTAAA---AGC-T-AATATTC--TAC-TTATAATTTACT-TCCACTTCAA-TAA--AA-TTG--T-T--TTAAAAGA-TA--ATAT----TTGT-AT-TTGA-AAATTAAC-TTCT-TA-----TT------TCA---C-ATCTATC-TCCATCT-TATGAAC-CTATTTA-----CAAAT-----ATT--GAAAA-CAATTAA-GGGAC-A-AACTCTT--CCAATTT-TCAT--GGG-T-GTATCT--AAGATT-CTTTCATC-TGATTTTCCAT---AATTAAAAAAAAAATAATAATAAC-TTG-AATGATGAATTTTA----------A-AAAATAAC-AGAA-CTAAA----AATTAAA-TATTGTTAGAATAAATG-ATT--------G--TTG-TTT-A-ATTT----G-T-TATCA---TTCATAGA--CCTAAGACT--GTTTTGAA------------GGGGAGG-GGGGAG-------A-ACTTTTGAATGTA----TTGACAAt
gi|8 : ACGTCTT----AAATA-TTTTAAAATGTT-------GTGTA-T--CCAT--GGT-A-AC-A--T-GACAC----C---TAACATTTCA-CA-------TG-TTTATG--GC-CA-TCCTCT--AG--G-C-C---A--CACAAAAACA-TTTG-TTT---TT-C-AAC--AT-A-ATTGC--ACT-ATCATTTT--T---CATATT----AGG-G---TT-TTTTA-AT-TT-TT----GT---TATACATTGTTG-TTTCTTG----TCAC---AA-AAATATGATTTAAATTAATTT----AAAGTTAC-T-ACAATGAATTTCAGTGTGAAACGTCCCTAAAAA-CTTATTGAAA--TAT-AGCTT-GC-TCTTG-A-TGAG-ATATAAACCGATACTTTTCTGTTTAGCATTAACAAAAACCGCA--GGCAATTT-A-TAAAGTC-CATA-T---ATG-TACCA--TTAATAAT-TAGATT-AAAACCTGGTTTC-TAA-AGCATTATAA--AAA--AG----GGG--GTTGGCT--ATTA-TTATGTAAGAAAAA------A-TAAAA--TGATA-TT-A-AATTTGTGCAAAAATTG-TAC-----ATTTAGTCAAAA-G---TCGTTCACAG--TTATCT-C
gi|9 : -ACA-GCACA-TCTAAAT-TAAG-AGCTCGTCTT----------TTTTAAGATATTTCAATTGGTGTGCT--TCAT--GGTAA-A--A--G-GACACTGTTT---TAA---TGCA-TA-------TG-T--TTT--GA-C--TTTTGTCCAGATG-A-----A--CA--ATAACATTTTG-TTTTTGTT-CAAACA-ATAAGATTGA--AGT-ATTCCTTGAAT---CACTCT----A-G-T---TT-ATTAA-AT-TA-TT----GTTCCTATAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TAAAGCGAGTTTTAAAACCACCACACCTAGCATCAAACGAAATTTCATTGTATATTGTAATTGAGCCTAAACTTTTCTAGATGATGCTACCATACTAAATTAGTATCACGCTTAGTGTTTGAGA
Alignments
lowQualScore : 1111111111111 22222 1111 1111111 2222 1111 333333333 11111 222222222222 111 1 111 1111 1111 111 33333 111 11 1111 1 1 3333333333 111 111 111 11 1 11 111111111111 22222 2222 11 111 11 11 22222222222 1 222222222 11 111111 1 222222 222222 111 1 444444444444444444444444444 2222 1 2222222222 1 111 222 1 1 333333333 1 1 22 1 22222 11 1 3333 777777777777777777777777777777 22 11 11 1 1 11 11 22 77777777777777777777777777777777777777 1 1 22222222 1 1 1 111 2222 333 111 111 1 222 11 222222 1 11 2222 111 22 11 1111111111 333333 1111111 3333333333333333333333333333 222222 22222 111 11 111 22 1 1111111 88888888888888888888888888888888888888888 222222 11 1111 1111 11 22222 4444444444 2222
lowQualScore : 6 5 5 5 5 5 5 5 2 1111111111111 99999 4 66 4 4 66 4 1 7777 4 4444444 99 55 99 4 0000 8 4 5555 11 4 4 8888 99 55 222222222 00000 222222222222 3 4 4 222 8 8 99 8 4 1 66 4 66 111 4 3333 8 99999999 0 5 5 5 2222 000 6 0 0 00000 444 8 0 11 3 7777 8 6 0 8 0 99 5555555555 8 444 999 88 8 6 8 8 8 444 99 0 11 6 11 8 8 8 8 999999999999 8 88888 2222 8 3 11 8 8 222 6 11 11 6 88888888888 6 8 555555555 11 8 222222 1 0 000000 0 888888 666 0 8 5 9 6 999999999999999999999999999 7 0 7 8888 3 4444444444 3 777 333 2 2 222222222 6 6 3 3 00 3 66666 44 3 0000 111111111111111111111111111111 7 00 00 6 88 7 3 3 44 88 00 00000000000000000000000000000000000000 3 3 55555555 3 0 0 0 1 6 3 777 1 1111 0 111 111 111 0 0 1 333 999 88 111111 3 88 7 7 4444 1 1 1 777 11 8 8 88 11 88 3 8 3 6 99 6 7777777777 6 99 222222 6 6 1 6 7 6 4444444 0000000000000000000000000000 8 8 88 000000 0 88888 444 8 0 88 0 444 5 8 8 8 8 777 1 8 1 11 6 8 9999999 44 0 88888888888888888888888888888888888888888 0 5 88 666666 88 6 8 8 1 33 8 8 8 7777 0 8 2222 6 11 0 88 00000 3333333333 8 1 8 1 77 1111
lowQualScore : . . . . . . . . . ............. ..... . .. . . .. . . .... . ....... .. .. .. . .... . . .... .. . . .... .. .. ......... ..... ............ . . . ... . . .. . . . .. . .. ... . .... . ........ . . . . .... ... . . . ..... ... . . .. . .... . . . . . .. .......... . ... ... .. . . . . . ... .. . .. . .. . . . . ............ . ..... .... . . .. . . ... . .. .. . ........... . . ......... .. . ...... . . ...... . ...... ... . . . . . ........................... . . . .... . .......... . ... ... . . ......... . . . . .. . ..... .. . .... .............................. . .. .. . .. . . . .. .. .. ...................................... . . ........ . . . . . . . ... . .... . ... ... ... . . . ... ... .. ...... . .. . . .... . . . ... .. . . .. .. .. . . . . .. . .......... . .. ...... . . . . . . ....... ............................ . . .. ...... . ..... ... . . .. . ... . . . . . ... . . . .. . . ....... .. . ......................................... . . .. ...... .. . . . . .. . . . .... . . .... . .. . .. ..... .......... . . . . .. ....
lowQualScore : 7 7 7 7 7 0 0 0 5 6666666666666 55555 4 99 4 4 11 4 4 0000 0 4444444 11 55 55 0 4444 0 0 5555 55 1 0 5555 55 11 111111111 00000 444444444444 2 0 0 555 0 0 55 3 4 1 11 4 11 444 4 9999 9 99999999 4 0 7 7 1111 000 7 8 8 44444 000 0 8 00 8 0000 0 0 6 0 8 44 0000000000 0 000 444 88 0 0 0 0 0 000 00 6 00 0 00 0 0 0 0 000000000000 0 66666 2222 0 2 00 0 0 666 0 00 00 0 22222222222 0 0 888888888 00 0 222222 0 6 888888 8 000000 888 8 0 0 8 5 888888888888888888888888888 3 7 3 3333 3 3333333333 3 777 333 0 0 777777777 7 7 3 3 77 3 00000 00 3 0000 000000000000000000000000000000 3 00 33 7 33 3 3 3 77 33 77 00000000000000000000000000000000000000 3 3 88888888 2 0 0 0 2 5 2 555 0 2222 8 222 222 000 2 0 0 333 333 33 000000 3 33 3 3 2222 0 0 0 555 22 0 0 88 00 88 8 0 2 7 22 7 8888888888 7 22 000000 7 7 7 7 3 7 3333333 2222222222222222222222222222 0 0 88 888888 8 00000 222 0 8 00 8 222 6 0 8 0 0 000 0 0 4 22 0 0 0000000 00 6 00000000000000000000000000000000000000000 8 6 88 000000 88 0 0 0 0 66 0 0 0 0000 8 0 6666 0 00 8 88 00000 2222222222 0 0 0 0 55 2222
consensus : AAGAGTC-ATTCTCT-GT-AAGCA-TCAA-ACTGGC-TTGGAAATGGCAT-AT-TTCAGATTGCCCT-TATATTTTGTTATATGATT-CACA-ACA-ATAAA-TCTAAAT-T--GTAGCACGTCTT----AAATA-TTTTAAAATGTT-------GTGTG-T--CCAT--GGT-A-A--ATG-ACAC----TTAACATTTCA-CA----TG--T-ATG--GC--CA-TTCTCT-----CCAGG-C--C---A--CAAAAACA-TTTG-TTT---TT-C-AAC--AT-A-ATTGCA--CT-ATTA--TTT--AT-CACATT----A-G-G---TA-TTTTA-AT-TT-TT----GT---TATACA-TGTTGTTTTCTTG-T--TCAC---AA-AAATATGA--TAAAATAATTAAA----AG-TACT-ACAATGAA-TTCG-GT----------CCTAATTA-CTTA---AAAT-TAT-AGCTT-GCATCTTG-A-TGAG-AT---AACCGATACTTTCTTGTTTGGTAT--ACAAAAA-CGCAGG--CAA-TT-A-T-AAGTC-CATA-TGA--TG-TACC-GT-TTAAT-AT-TAGATT-AAAACCTG--TTC-TAA-AGCA-TATAA--AAA--AAAATTGGG--GT--GTT--ATTA-TTATGTAAG-AAAA----AT-T-AAA--T-GATA-TTAA-AATTTGTGCAAAAATTGATAG-----ATTTAGTCAAAA-GCT--CGTTCACAGTTTTATCT-CCCTTGAATAGGTCTA------CGTAAG-CACC-GC-TC-G--CTTTGAACTGAACGATTTTG----CTGAAACAG-GAATAT-GGCAG-AT-ACTT-A-GAATGCACAC---CAAGTTTGCATCTTATTCTTGAA--TTGGAA-GTTTGATGTCAC-ACG-GCAT-CTTT-TTTTCC---ANTCAACTAGG-CCTAG---GCATAG--CGACC---AGGTCTAGGGCTG-CT----TTGTG-GCACCTTTGGCCAC--TGTGCAC-AGCTTCGT-TAGATGTTT--CTGTGGAAACT-GACAG--A--TAACTCG---C--------TT-CATCC--TGT-GTTTT-AAACATTCA-AA---TTACGTTCAATATTT-GAA-CAG-AACACTTTCACATTTTTATGAA---AANT----AATATGC---TATCC-NTCA-A-TCAC-TGANAGAAAT---TACAAAGGTTC--AGTGATCATCCCGGATA-CTG-TATTTATA--TTATTTTCATAAAGTGAGTTTG-NTTTATTTNTAACANTNT---GTAAAG-TAGC-T-AAT-TTC--TAC-TTATGATTTACT-TCCACTTCAA-TAA--AT-TTG--T-T--T--AAAAA-TA--ATAT----TCGT-ATGTAAA-AAATAAAC-TTC---CATATTT-------CAT--T-AT-TGTCATCCA--T-TATGAAC-TTA-TTA-----CAAAT-----ATT--GAAAA-CAATTAAGGGGGC-ACAACTCTC--TCAAAAT-TCATNGGGG-T-GGATCTAAAAAAAT-CTTTCGTCTTGATTTT-C-AT---A---AAAAACAAAATAA----AACNTTG-AATGA--------A----------A-GAAATAACAAGAA-CTTA-N----AATTAAA-TATTGATGAGATGAATG-ATTC-ATCAACGT-TTG-TTT-A-TTTT----ATT-TATCA--TTTCATAGG--CGTAGGACTGGNTTT-----TGAA-----TGGGGGGG-GGGGGGGGGGGCTA-ACTTTTAAATGTA----TTGACAA
Reference ( family-6543 ) : AAGAGTC-ATTCTCT-GT-AAGCA-TCAA-ACTGGC-TTGGAAATGGCAT-AT-TTCAGATTGCCCT-TATATTTTGTTATATGATT-CACA-ACA-ATAAA-TCTAAAT-T--GTAGCACGTCTT----AAATA-TTTTAAAATGTT-------GTGTG-T--CCAT--GGT-A-A--ATG-ACAC----TTAACATTTCA-CA----TG--T-ATG--GC--CA-TTCTCT-----CCAGG-C--C---A--CAAAAACA-TTTG-TTT---TT-C-AAC--ATNA-ATTGCA--CT-ATTA--TTT--NT-CACATT----A-G-G---TA-TTTTA-AT-TT-TT----GT---TATACA-TGTTGTTTTCTTG-T--TCAC---AA-AAATATGA--TAAAATAATTAAA----AG-TACT-ACAATGAA-TTCG-GT----------CCTAATTA-CTTA---AAAT-TAT-AGCTT-GCATCTTG-A-TGAG-AT---AACCGATACTTTCTTGTTTGGTAT--ACAAAAA-CGCAGG--CAA-TT-A-T-AAGTC-CATA-TGA--TG-TACC-GT-TTAAT-AT-TAGATT-AAAACCTG--TTC-TAA-AGCA-TATAA--AAA--AAAATTGGG--GT--GTT--ATTA-TTATGTAAG-AAAA----AT-T-AAA--T-GATA-TTAA-AATTTGTGCAAAAATTGATAG-----ATTTAGTCAAAA-GCT--CGTTCACAGTTTTATCT-CCCTTGAATAGGTCTA------CGTAAGTCACC-GC-TN-G--CTTTGAACTGAACGATTTTG----CTGAAACAG-GAATAT-GGCAG-AT-ACTT-A-GAATGCACAC---CAAGTTTGCATCTTATTCTTGAA--TTGGAA-GTTTGATGTCAC-ACG-GCAT-CTTT-TTTTCC---AGTCAACTAGG-CCTAG---GCATAG--CGACC---AGGTCTAGGGCTGACT----TTGTG-GCACCTTTGGCCAC--TGTGCAC-AGCTTCGT-TAGATGTTT--CTGTGGAAACT-GACAG--A--TAACTCG---C--------TT-CATCC--TGT-GTTTT-AAACATTCA-AA---TTACGTTCAATATTT-GAA-CAG-AACACTTTCACATTTTTATGAA---AANT----AATATGC---TATCC-NTCA-A-TCAC-TGANAGAAAT---TACAAAGGTTC--AGTGATCATCCCGGATA-CTG-TATTTATA--TTATTTTCATAAAGTGAGTTTG-NTTTATTTNTAACANTNT---GTAAAG-TAGC-T-AAT-TTC--TAC-TTATGATTTACT-TCCACTTCAA-TAA--AT-TTG--T-T--T--AAAAA-TA--ATAT----TCGT-ATGTAAA-AAATAAAC-TTC---CATATTT-------CAT--T-AT-TGTCATCCA--T-TATGAAC-TTA-TTA-----CAAAT-----ATT--GAAAA-CAATTAAGGGGGC-ACAACTCTC--TCAAAAT-TCATNGGGG-T-GGATCTAAAAAAAT-CTTTCGTCTTGATTTT-C-AT---A---AAAAACAAAATAA----AACNTTG-AATGA--------A----------A-GAAATAACAAGAA-CTTA-N----AATTAAA-TATTGATGAGATGAATG-ATTC-ATCAACGT-TTG-TTT-A-TTTT----ATT-TATCA--TTTCATAGG--CGTAGGACTGGNTTT-----TGAA-----TGGGGGGG-GGGGGGGGGGGCTA-ACTTTTNAANGTA----TTGACAA
gi|1 : AAGA-TC-ATTCTCT-GTTAAGCA-TCAA-ACTGGCGTTGGAAATGGCAT-AT-TTCAGATTGCCCT-TATATGTTTTTATATGATA-CTAA-ACA-GTAAA-TCTAAAT-T--GTAGCACGTCTT----AAATA-TTTT-AAATGTT-------GTGTA-T--CCATC-GGT---A--ATG-ACAT----T---CAGTTCA-CA----TG--T-ATG--GC--CA-TGCTCT-----CTAGG-A--C---A--CAAAAACA-TTTG-TTT---TT-C-AAC--ATAA-ATTGCA--CT-ATTA--TTT--TT-CATATT----A-G-G---TATTTTTA-AT-TT-TT----AT---TACA----GTTGTTTTCTTGTT--TCACTTAAA-AAATA-GA--TATAAT--TTAAA----AG-TACTGACAATG-A-TTCG-TC----------CCTAATTACCTTA---AAAT-TATGAGCTT-GCATCTTG-ATTGAG-AT---AACCGATACTTTCTTATTTGGTAG--ACAAAAA-CGCAGG--CAA-TT-A-T-AAGT--CATAGTAA--TG-TACC-AT-TTAAT-AGATAGATTAAAAACCTG--TTC-TAA-GGCA-TATAA--AAA--AAAATTGGG--G---G-T--ATTA-TTATGTAAG-AAAA----AT-T-AAG--T-GATATTTAA-AATTTGTGCAAAAATTG-TAG-----ATTT-GTCAAAA-GTT--TGTTCACAGTTTTATCTCCCCTTGAATAGGTCTA------CA------ACG-GC-TG-G--CTTTGGACTGAATGATTTTG----TTGAAGCAG-GAATATGGGCAGCATAACTTGA-GAATGCACAC---CAGATTTGCATTTTAATTTTGAAATTTGGAATGTTTGATGTCAC-ACG-GCATGCTTT-TTTTCC---CATCAAC-AGG-CCTAG---GCATAG-----CC---A-GTCT-GGGCAG-CT----TTGTG---ACTTTTGG-CAC--TGTGCAC-AGCTTCGT-TAGATGTTT--CTGTTGAAACT-GACAGAAA--AAACGCC---C--------TTATATCCTTTGTGGTTTTAAAACAATCACAAAGCTT---TTCAATATTTGGAA-CAGAAACACCTTCACATTTTTATGAA---AAAT----AATATGC---TATCG-ATCA-A-TAAC-TGAGAGAAAT---TACAAAGGTTC--AGTGATCATCACGGA-A-CTG-TATTTATACTTTA-TTTCATAAGGTGAGTTTACTTTTATTTTTAACAATTT---GTAAA--TAGCAT-AAT-TTC--TACTTTATAATTTACTGTCCATTTCAA-TAA--AT-TTG--T-T--T--AAAAA-TA--A-AT----T-GT-AT-TGAA-AAATAAACATTC---GATATTT-------CAT--T-AT-TGTCATCCA--T-TATGAAC-TTA-TTA-----CAAATA----ATT--GAAAACCAATTAAGGGGG--ACAACTCTC--TCCAAAC-TCATTGGGG-T-GGATCTAAAAAAAA-ATTTCATCTTGATTTT-C-ATTTAA---AAAAACAAAACAA----AACTTTGAAATGA--------ATGATTTGGCGA-GGAATAACAAGAA-CTTA-A----AATTTAA-TATTG-TGAGATAAATG-ATTC-ATCAACGT-TTGATTT-A-TTTT----ATT-TATCA--TTTCATA-G--CGTAGGAC-GTTCTT-----TAAC-----TGGGGGGG-GGGGGGGGGGGCAA-ACTTTTTAAAGTA----TTTACAA
gi|10 : GGGTC-ACTCTCT-GT-CAGCG-TCAA-ATTGTC-TTGAAAACGACAG-AT-TTCAGATTGCC------------------------ACA--CA-ACACA-TCGAAAT-T--AGAGCTTGTCTTTAAAAGATA-TTTCAAAATGTT-------GTGTG-C--ACAT--AGT-ACA--AGG-ACAA----TT--TGTTTTA-TG----TG--T-ATGTTGT--GACTTTTCT-----CCAGA-T--C---AATC-AAAACA-TTTG-TTTAA-TT-C-AAC--A
gi|11 : c-TTGAAAACGACAG-AT-TTCAGATTGCC-------------------AT-------ACA-ACACA-TCGAAAT-T--AGAGCTTGTCTTTACAAGATA-TTTCAAAATGTT-------GTGTG-T--ACAT--AAT-ACA--AGG-ACAC----T----GTTTAA-TG----TG--T-ATGTTGT--GACTTTTCT-----CCAGA-T--C---AATC-AAAATA-TTTGTTTT---TT-C-AAC--AATA-ATTGAA--GT-ATTA--TTG--AT-TACACT----ATG-G------TTTTA-ataa
gi|12 : AAGAGTCTATTCTCTTGT-AAGCA-TCA---CTGGC-TTGGAAATGGCAT-TT-TTCAGATAGCCCT-GATATTGTTATATATGATTACATA-ACATATAAG-TCTAAAT-T--GTAGCACGTC-T----AAATATTTTTAAAATGTT-------GTGTT-T--CCAT--GGT-A-C--A-A-ACCC----TTAACATTTt
gi|13 : --CTAT--GGT-A-AACATG-ACACTGT-TTAA---TGCA-CAGAGTTG--T--TGT-ACCTCA-TCCATT-----CTAAG-C--CGCTA--CAAAAATA-TTTG-TTT---TT-C-AACTAATTA-TTTGAA--CTAATCAGTTTT--ATACACATTCTAGA-G-G---TA-CTTgctctaatacattatagacacgtaccctggtcac
gi|14 : tttgGAGTC-ATTCTCT-GT-GAGCA-TCAA-ACTGGC-TTGGAAATGGCAT-GT-TTCAGATTGCCCT-TATATTTTGTTATATGATTGCACA-ACA-CAAAG-TCTAAAT-T--GGAGCATCTCTT----AAATA-TTATAGA
gi|16 : GTTT---TTTATTGGTAACATTATCATGTAAAG-CGGC-T-AAT-TAA--TAC---ACGTTCTACT-TCGA--TCAA--AACTAT-TTG--CATAGT--AAAGA-TAAGATAT----T--T-ACTTAAA-AAA-AAAC-TTA---CATGTtaaagtgcatg
gi|17 : CA-TA----TG--T-TTT--GA--C--TTTTCT-----CCAGA-T--C---AA-CCAAAACA-TTTG-TTT---TTTC-AAC--AATA-ATTGAA--GT-ATTC--TTG--AT-CACTCT----A-G-T---TA-ATTTA-ATATTGTT----CC---TATACA-TGgcaa
gi|2 : atgAAGAGTC-ATTCTCT-GT-AAGCA-TCAA-ACTGGC-TTGGAAATTGGATTATATTCAGATTGCCCTATA-ATTTTGTTATATGATG-C-TA-ACA--TAAG-TCTAAATCT--GTGTTACG-CTT----AAATA-TTT-AAAATGTT-------GCGT--T--CTAT--GGT-A-AGCATGGACAC----TTAACATTTCA-CA----TG--TTATG--AC--C--TCCTCTTAGTCCCA---C--C---A--CAAA--CA-TTT---------T-C-AAC--AT-A-ATTGCGAGCT-ATAG--TTT-----CACATT----A-G-AAGTTA-TTTTA--T-TT-TT----GT---TATACA-TGCTGTTTT---G-T---CAT---AA-AAATATGA--TTAAATGATGAAATTAAAG-TACTTACAATGAA-TTCCTGT----------CCTAATTA-CTTA---AAAT--AT-AGCTT-GCTTCTTG-A-TGAG-AC---AACCAAT----TTGTGTTTG-TAT--ACAATAA-CGCAGGGGCAA-TT-A-T-AG---------TGACATG-TACCCGT---AAT-CT-TAGATT-AAAACCTG--TTC-TAA-AGC--CATTA--CAA--GAAATTGGG--TG--GTT--ATTACTTATCTAAG-AAAA----AT-TTAAA--T-GATA-T-----ATTTGTGCAAAAAATGATAA-------TTAGTCAAAG-TCTGTCGTTCACAGTTGT---T-CC--TGA-TAA-TCTATTGATGCATAAGACGTCTGCGTT-GAACTTTGAAC--AGCGAATTTGTTGGCTGAAACAGTGAATAT-GGCAG-AT-ACTT-A-GAATGCACAC---CAAGTTTGCAT-TTATT-TTGAA-----------TTGATGT-AT-ATG-ATA----TT-TTTTCC---AGTCAA-TAGGATCTAGAGAGCAGAG--TGA-----AG--CTAAAG-TG-CT----T--TG-GCA---TTGGCCAC--TG-GCACGAGCTTCGT-CAGA--TTG--CTGTGTAAACTGGACAG--AATTAATTTGAAACAGAACAAATT-CA--C--T----TTTT-AAAAATGCA-AA---T
gi|2 : gtgtttATTT-GAAACAG-AACAAATTCAC-TTTTTAAAAATGCAAAT----GCTCTGG---TGTCC-TTCA-AATCATAGGACAAAAAT---TTCAAAA--TC--AGTGATCATTCCAGATA-TTG-TATTTATA--TTATTTTCATGAAGTGAGTTTG-C-TTATTTATAACATTAT---GTAAAA-TAGC-T-AA--TTC--TAA-TTATGATTTACT-TCCACTTCAA-TAA--AT-TTG----T--T--AAAAA-TA--ATAT----TTGT-ATGTAAA-AAA-AAAC-TT----CATATTC-------AAT--T-TA-TGTCCT-CA--TGTATGAAC-TTA-TGA-----C-AAT-----ATTTGAAAAA-CAATTAAGGGGG--ACAACT-TC--TC--AAT-TCATAGGGG-TGGGATCTAAAAAAAT-CTTTCGTC-TGATTTT-CAAT---A---AAAA-------AA----AACATTG-AA-------------------------GAATAAGCAGAA-CTTATG----AATCAA------GATGAGATGAATG-ATTC-AACAACCG-TTG-TTT-A-TTGT----ATT-TATTA--TTTC--AGG--CGTAGGACTGGTTAT-----TGAA----------GGG-GGGGGCGGGGGCTA-Agctctggtgtccttcaaatcataggacaaaaatttcaaaatcagtgatcattccagatattgtatttatattattttcatgaagtgagtttgcttatttataacattatgtaaaatagctaattctaattatgatttacttccacttcaataaatttgttaaaaataatatttgtatgtaaaaaaaaacttcatattcaatttatgtcctcatgtatgaacttatgacaatatttgaaaaacaattaagggggacaacttctcaattcataggggtgggatctaaaaaaatctttcgtctgattttcaataaaaaaaaacattgaagaataagcagaacttatgaatcaagatgagatgaatgattcaacaaccgttgtttattgtatttattatttcaggcgtaggactggttattgaaggggggggcgggggctaatgctaataattgcaatata
gi|3 : gtgtttaagagtcattctctgtaagcatcaaactggcttggaaattggattatattcagattgccctataattttgttatatgatgctaacataagtctaaatctgtgttacgcttaaatatttaaaatgttgcgttctatggtaagcatggacacttaacatttcacatgttatgacctcctcttagtcccaccacaaacattttcaacataattgcgagctatagtttcacattagaagttattttatttttgttatacatgctgttttgtcataaaaatatgattaaatgatgaaattaaagtacttacaatgaattcctgtcctaattacttaaaatatagcttgcttcttgatgagacaaccaatttgtgtttgtatacaataacgcaggggcaattatagtgacatgtacccgtaatcttagattaaaacctgttctaaagccattacaagaaattgggtggttattacttatctaagaaaaatttaaatgatatatttgtgcaaaaaatgataattagtcaaagtctgtcgttcacagttgttcctgataatctattgatgcataagacgtctgcgttgaactttgaacagcgaatttgttggctgaaacagtgaatatggcagatacttagaatgcacaccaagtttgcatttattttgaattgatgtatatgatattttttccagtcaataggatctagagagcagagtgaagctaaagtgctttggcattggccactggcacgagcttcgtcagattgctgtgtaaactggacagaattaTC-ATTC-CT-GT-AAGCAATCAACACTGGC-TTGGAAATGGCTT-AT-TTCA-ATAGCCCT--ATATTT-GTATTATGATT--ACATACC-ATAAA-TCTAAAT-T--GTAGCA-GTCT-----AAATA-TTTTTAAATGAT-------GTGTG-TTTCCATTAGGT-A-A--A---ACCC----TTAACATTTCATCA----TG--T-ATG---C--CA-ATCTCT-------AGG-CA-C---A--CAAAAACA-TTTG-TTT---TTTC-AAA--AT-A-ATTGCA--CT-ATTA--TTT--TT-CATATT----A-GCG---TA-TTT-A-AT-TT-TTTCCAGT----ATATA-TGTTGTTT-CTTG-TCATTAC---AAGAAATATGA--TAAAATAATTAAA----AG-TACT-ACAATGAA-T-CG-GT----------CCTAATTA-CTTA---AAATATA--AGCTGAGCATCTGGGA-TAGA-AT---AAC-GATA-TTTCTTGTTTGGTAT--ACAAAAAACACAG---CAA-TTTA-T-AAGTT-CATA-T-A--TGGTACC-GTATTAAT----TAGATT-TAAATCCG--GTCGTAAGAGCA--ATAATTAAAGTAATATTGCTTTGT--GTTGTATTA-TTATGTTAG-AAAATTATATAT-AAA--TTGATA-CTAATAATTTGTGCAAACATT-ATAGGATTTATCTAGTCAAAAAGC----GTTCACAGTT--ATCT-CC-TTGATTAGACTTA------TGTAAGTCACC-AC-TCTG--CTTTGAACTGAATGATTT-G----CTGAAACAG-GAA----------AT-ACTT-ACGAATGTACACTCCCAAGTTTGCATCTTATTCTTGAA--TTGGAA-GTTT-ATGTCACCACGAGCAT-CTTTGTTTTCCCTTATTCAACTAGT-CATAT----CATAGAACGACCGATAGGTCTAGGGCTTGCTATCTTTGTGAGCACCTTTGGCCACATTTTGCAC-TGCTTCGTCTAG-TGTTTTTCTGTGGAAAC--GACAG--A--TAACTTG---C--------TT-CATCC--TGT-GTTTT-AAACATTCA-AA---TTACGTTTAATA-TT-GAA-CAG-ATAACTTCTACATTTATATGAA---AATC----AAAATGCCA-TATCTGATCATA-TCAC-Ttgctaataattgcaatata
gi|4 : TAAAGCTACC-TTAAT-TTCCCTAA-TTA-GACTTACT-TCCACTTCAAATAA--AT-TTGGGT-T--T--AAAAAATA--ATAT------GT-ATGTAAACAGATAAAC-TTC---CA-AGTT-------CATCTT-AT--GTC--CCACTT-TATGAACCTTA-TT------CAAAT-----ATT--GAAAA-CAATTAAGGGGGCTACAACTCT---TCAAAATATCATAGGGGGT-GGATCTAAAAAACTTCTTTCGTCT-GATTTT-C-AT---A---AAAAATAACAT--------CTT------GA--------A----------A-GAAATAACAAGAAGCTTA-CGTATACTTAAAATATTGATGAGATGAATG-ATTC-ATCAACGTCTTG-TTTTA-TTTTTATTATT-TATC---TTTCATAGG--CGTAGGACTGGGTTT-----TGAA--------AAGGG-GGGGGGGGGGTCTATACTTCTACAT-TAATCTTTGACAA
gi|5 : A-TAA--ATATTG--T-T--T--AAAAA-TA--ATATAAATCCGTTATGTAAA-AAATAAAC-TTCATACGCATTTATGTGCTCAT--TTAT-TGGAATACA--T-TACACAC-TT--TTAGACAACAAATTCTCCATT----AAA-CA--CACGAGGGC-ACAAC-CTCGTTCAAAAT-TCAATGGGG-T-GGATC---AAAAAT-CTTTCTTCT--ATTTTAC-AT---A---AAATACAAAA--------ACATTG---TGA--------A----------AAGAAATA-CAAGA--CTTA-T----AATTAAA-TATTGATGAGATGAATGAATTCTATCAACGT-TTG-TTT-ATTTTT----ATTATATTAATTTTCTTAGGCTCGTTGGACTGGATTTGAAAGCGAAAGCCCTGGAAAAGCGGGGCGGGGGGCTA-ACTTTGAAATATA----tataaaaaaataaaaaaaccgcagaaaaaaccacaaaaaccatcaccacacacagaaggctaaccaaacccaaattggggtcgggggcaatattcttaataaatcactcctaaaaaagggggggggggcatattctattaatcactctcctaaaaagggacagggggggggggggggcaaacacctaatgtgtgtgtggggactttctaaatacatgtttgacaacttacaagcacccaataaaaaaaaagaagtctaaaacaacaaactgctgcaaactgatagcaaaaaaaaaaaaaatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttcacgcctctacccacccctcccatccccctggggccgagttcccgcgaagaattgaatccttcgggtcg
gi|6 : aataaaactcttacacatatatgcatTCTCT-GT-AAGCA-TCAA-ACTGGC-TTGGAAATGGCAT-AT-TTCAGATTGCCCT-TATATTTTGTTATATGATTGCATA-AC--ATAAAGTCTAAAT-T--GTAGCATGTCTT----AAATA-TTTTAAAATGTT-------GTGTT-T--CCAT--GGT-A-AC-ATG-ACAC----TTAACATTTCA-CA----TGT-T-ATG--AC--C---TCCCT-----CTAGACC--C---A--TAAAAACA-TTTA-TTT---TT-CAAAC--AT-A-ATTGCA--CT-ATTA--TTT--AT-CACATTA---A-G-G---TA-TTTTATAT-TT-TT----GT---TATACA-TGCTGTTTTCTTG----TCAT---AA-AAATATGA--TGAAATAGTTAAA----AG-TACT-AGAATG-A-TTCA-GT----------CCTAATTA-CTTA---AAA--TAT-AGCTT-GCATCTTG-A-TGAGAAT---AATCAATATTGTCTTGTTCGGTAT--ACAAAAA-CGCAGG--CAA-TT-ATT-AAGTCATACA-TGA--T----CC-G---TAAT-AT-TAGATT-AAAA-CTA--TTC-TAA-AGCA-TAT-A--AAA--AAAATTGGG--GT--G-T--ATTATTTATGTAAG-AAAA-------T-AAATTT-GATA-TTAA-ATTTTGT-TAAAAAGTGATAG-----ATTTAGTCAAAA-G-T--CGTTCACAG--TTATCT-CCCTTGAATAAGTCTA------aattaattctcacatatacaaaaaaaagaacaaaaaaaacaccactgcaatcacacaaagaggctacccaaaaccacaaaatgtgagacaaaccggtaggaagggacaattactatagatactaaaggagagaggggggaggccggcactacaataaattgatgtgtggagagaacttactaagtaatgtgaaaacttaaaagcaaacaaataaaatgaaaagcacaagacatgctaatacacaatgactgcgaacccagtaagtaaaagcaccaaaaaaaaaaaatagcatccaccataacaacacagcagagataggttacggacaacccataacaactagaacaacaccccccgcccctacataccatcttgttagaggttcccctccccctggggcctctgagttccggaaaaagattgaacttccgggttcaag
gi|7 : TTT-GAA-CAG-AACACTCT-ACATTTTTATGAA---AACTTTCAAATGTACGTACATTC-CTCA-A-TTAC-TGAAAGAGATGAATACAT-GGTTCTCAGTGATCATCCC---TATCTGATATTTATA--TAATTT-CAGAAAGTGAGTTTG-ATTTATTTTTAACAATTA---GTAAA---AGC-T-AATATTC--TAC-TTATAATTTACT-TCCACTTCAA-TAA--AA-TTG--T-T--TTAAAAGA-TA--ATAT----TTGT-ATTT-GA-AAATTAAC-TTC---T-TATTT-------CA---C-ATCTATC-TCCATCT-TATGAAC-CTATTTA-----CAAAT-----ATT--GAAAA-CAATTAA-GGGAC-A-AACTCTT--CCAATTT-TCAT--GGG-T-GTATCT--AAGATT-CTTTCATC-TGATTTTCC-AT---AATTAAAAAAAAAATAATAATAAC-TTG-AATGATGAATTTTA----------A-AAAATAAC-AGAA-CTAA-A----AATTAAA-TATTGTTAGAATAAATG-ATT--------G--TTG-TTT-A-ATTT----G-T-TATCA---TTCATAGA--CCTAAGACTG--TTT-----TGAA------GGGGAGG-GGGGAG-------A-ACTTTTGAATGTA----TTGACAAt
gi|8 : ACGTCTT----AAATA-TTTTAAAATGTT-------GTGTA-T--CCAT--GGT-A-AC-ATG-ACAC----CTAACATTTCA-CA----TGTTT-ATG--GC--CA-TCCTCT-------AGG-CCAC---A--CAAAAACA-TTTG-TTT---TT-C-AAC--AT-A-ATTGCA--CT-ATCA--TTT--TT-CATATT----AGG-G---TT-TTTTA-AT-TT-TT----GT---TATACATTGTTG-TTTCTTG----TCAC---AA-AAATATGATTTAAATTAATTTAA----AGTTACT-ACAATGAATTTCA-GTGTGAAACGTCCCTAAAAA-CTTATTGAAA--TAT-AGCTT-GC-TCTTG-A-TGAG-ATATAAACCGATACTTTTCTGTTTAGCATTAACAAAAACCGCAGG--CAATTT-A-TAAAGTC-CATA-T-A--TG-TACC-A--TTAATAAT-TAGATT-AAAACCTGGTTTC-TAA-AGCATTATAA--AAA--AG----GGG--GTTGGCT--ATTA-TTATGTAAGAAAAA----AT-A-AAA--T-GATA-TT-A-AATTTGTGCAAAAATTG-TAC-----ATTTAGTCAAAA-G-T--CGTTCACAG--TTATCT-C
gi|9 : -ACA-GCACA-TCTAAAT-TAAG-AGCTCGTCTT----------TTTTAAGATATTTCAATTGGTGTGCT--TCAT--GGTAA-A--AGG-ACACTGTTTTAA---TGCA-TA----TG--T-TTT--GA--C--TTTTGT-----CCAGA-TG-A---A--CAATAACATTTTG-TTTTTGTT-CAAACA-ATAAGATTGAA--GT-ATTC--CTTGAAT-CACTCT----A-G-T---TT-ATTAA-AT-TA-TT----GTTCCTATAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TAAAGCGAGTTTTAAAACCACCACACCTAGCATCAAACGAAATTTCATTGTATATTGTAATTGAGCCTAAACTTTTCTAGATGATGCTACCATACTAAATTAGTATCACGCTTAGTGTTTGAGA
Alignments
lowQualScore : 1111111111111 22222 1111 1111111 2222 1111 111 333333333 11111 111111111111111 2222222 111 1111 1111 111 33333 111 11 1111 1 1 3333333333 111 111 111 11 1 11 111111111111 22222 2222 11 111 11 11 22222222222 1 222222222 11 111111 1 222222 222222 111 1 55555555555555 111111 11 2222 2222 1 2222222222 1 111 222 1 1 333333333 1 1 22 1 222 11 1 3333 6666666666666 111 2222 22 11 11 1 1 11 11 22 77777777777777777777777777777777777777 1 1 22222222 1 1 1 111 2222 333 111 111 1 222 11 222222 1 11 2222 111 22 11 1111111111 333333 1111111 3333333333333333333333333333 222222 22222 111 11 111 22 1 1111111 88888888888888888888888888888888888888888 222222 11 1111 1111 11 22222 4444444444 2222
lowQualScore : 6 5 5 5 5 5 5 5 2 1111111111111 99999 4 66 4 4 66 4 1 7777 4 4444444 99 55 99 4 0000 8 4 5555 11 4 4 8888 4 000 222222222 00000 777777777777777 4 4 55 1111111 4 8 4 4 8888 1 66 4 66 111 4 3333 8 99999999 0 5 5 5 2222 000 6 0 0 00000 444 8 0 11 3 7777 8 6 0 8 0 99 5555555555 8 444 999 88 8 6 8 8 8 444 99 0 11 6 11 8 8 8 8 999999999999 8 88888 2222 8 3 11 8 8 222 6 11 11 6 88888888888 6 8 555555555 11 8 222222 1 0 000000 0 888888 666 0 8 5 9 6 66666666666666 888888 88 4444 7 8888 3 4444444444 3 777 333 2 2 222222222 6 6 3 3 00 3 333 1 44 3 0000 0000000000000 7 999 8888 7 00 00 6 88 7 3 3 44 88 00 00000000000000000000000000000000000000 3 3 55555555 3 0 0 0 1 6 3 777 1 1111 0 111 111 111 0 0 1 333 999 88 111111 3 88 7 7 4444 1 1 1 777 11 8 8 88 11 88 3 8 3 6 99 6 7777777777 6 99 222222 6 6 1 6 7 6 4444444 0000000000000000000000000000 8 8 88 000000 0 88888 444 8 0 88 0 444 5 8 8 8 8 777 1 8 1 11 6 8 9999999 44 0 88888888888888888888888888888888888888888 0 5 88 666666 88 6 8 8 1 33 8 8 8 7777 0 8 2222 6 11 0 88 00000 3333333333 8 1 8 1 6 1111
lowQualScore : . . . . . . . . . ............. ..... . .. . . .. . . .... . ....... .. .. .. . .... . . .... .. . . .... . ... ......... ..... ............... . . .. ....... . . . . .... . .. . .. ... . .... . ........ . . . . .... ... . . . ..... ... . . .. . .... . . . . . .. .......... . ... ... .. . . . . . ... .. . .. . .. . . . . ............ . ..... .... . . .. . . ... . .. .. . ........... . . ......... .. . ...... . . ...... . ...... ... . . . . . .............. ...... .. .... . .... . .......... . ... ... . . ......... . . . . .. . ... . .. . .... ............. . ... .... . .. .. . .. . . . .. .. .. ...................................... . . ........ . . . . . . . ... . .... . ... ... ... . . . ... ... .. ...... . .. . . .... . . . ... .. . . .. .. .. . . . . .. . .......... . .. ...... . . . . . . ....... ............................ . . .. ...... . ..... ... . . .. . ... . . . . . ... . . . .. . . ....... .. . ......................................... . . .. ...... .. . . . . .. . . . .... . . .... . .. . .. ..... .......... . . . . . ....
lowQualScore : 7 7 7 7 7 0 0 0 5 6666666666666 55555 4 99 4 4 11 4 4 0000 0 4444444 11 55 55 0 4444 0 0 5555 55 1 0 5555 0 666 111111111 00000 222222222222222 0 0 55 0000000 0 0 0 0 5555 1 11 4 11 222 4 9999 9 99999999 4 0 7 7 1111 000 7 8 8 44444 000 0 8 00 8 0000 0 0 6 0 8 44 0000000000 0 000 444 88 0 0 0 0 0 000 00 6 00 0 00 0 0 0 0 000000000000 0 66666 2222 0 2 00 0 0 666 0 00 00 0 22222222222 0 0 888888888 00 0 222222 0 6 888888 8 000000 888 8 0 0 8 5 88888888888888 777777 33 0000 3 3333 3 3333333333 3 777 333 0 0 777777777 7 7 3 3 77 3 333 0 00 3 0000 3333333333333 3 777 3333 3 00 33 7 33 3 3 3 77 33 77 00000000000000000000000000000000000000 3 3 88888888 2 0 0 0 2 5 2 555 0 2222 8 222 222 000 2 0 0 333 333 33 000000 3 33 3 3 2222 0 0 0 555 22 0 0 88 00 88 8 0 2 7 22 7 8888888888 7 22 000000 7 7 7 7 3 7 3333333 2222222222222222222222222222 0 0 88 888888 8 00000 222 0 8 00 8 222 6 0 8 0 0 000 0 0 4 22 0 0 0000000 00 6 00000000000000000000000000000000000000000 8 6 88 000000 88 0 0 0 0 66 0 0 0 0000 8 0 6666 0 00 8 88 00000 2222222222 0 0 0 2 5 2222
consensus : AAGAGTC-ATTCTCT-GT-AAGCA-TCAA-ACTGGC-TTGGAAATGGCAT-AT-TTCAGATTGCCCT-TATATTTTGTTATATGATT-CACA-ACA-ATAAA-TCTAAAT-T--GTAGCACGTCTT----AAATA-TTTTAAAATGTT-------GTGTG-T--CCAT--GGT-A-A--ATG-ACAC----TTAACATTTCA-CA----TG-T--ATG--GC--CA-TTCTCT-----CCAGG-C-C---A--CA--AAAACA-TTTG-TTT--TT-------C-AAC-A-T-AA----TTGCA--CT-ATTA--TTT--AT-CACATT----A-G-G---TA-TTTTA-AT-TT-TT----GT---TATACA-TGTTGTTTTCTTG-T--TCAC---AA-AAATATGA--TAAAATAATTAAA----AG-TACT-ACAATGAA-TTCG-GT----------CCTAATTA-CTTA---AAAT-TAT-AGCTT-GCATCTTG-A-TGAG-AT---AACCGATACTTTCTTGTTTGGTAT--ACAAAAA-CGCAGG--CAA-TT-A-T-AAGTC-CATA-TGA--TG-TACC-GT-TTAAT-AT-TAGATT-AAAACCTG--TTC-TAA-AGCA-TATAA--AAA--AAAATTGGG--GT--GTT--ATTA-TTATGTAAG-AAAA----AT-T-AAA--T-GATA-TTAA-AATTTGTGCAAAAATTGATAG-----ATTTAGTCAAAA-GCT--CGTTCACAGTTTTATCT-CCCTTGAATAGGTCTA------CGTAAG--AC-GCTC-GCTTTGAACT--GAAC---GATTTTG----CTGAAACAG-GAATAT-GGCAG-AT-ACTT-A-GAATGCACAC---CAAGTTTGCATCTTATTCTTGAA--TTGGAA-GTTTGATGTCAC-ACG-GCAT-CTTT-TTTTCC---ANTCAACTAGG-CCTAG---GCATAG--CGACC---AGGTCTAGGGCT-GCT----TTGTG-GCACCTTTGGCCAC--TGTGCAC-AGCTTCGT-TAGATGTTT--CTGTGGAAACT-GACAG--A--TAACTCG---C--------TT-CATCC--TGT-GTTTT-AAACATTCA-AA---TTACGTTCAATATTT-GAA-CAG-AACACTTTCACATTTTTATGAA---AANT----AATATGC---TATCC-NTCA-A-TCAC-TGANAGAAAT---TACAAAGGTTC--AGTGATCATCCCGGATA-CTG-TATTTATA--TTATTTTCATAAAGTGAGTTTG-NTTTATTTNTAACANTNT---GTAAAG-TAGC-T-AAT-TTC--TAC-TTATGATTTACT-TCCACTTCAA-TAA--AT-TTG--T-T--T--AAAAA-TA--ATAT----TCGT-ATGTAAA-AAATAAAC-TTC---CATATTT-------CAT--T-AT-TGTCATCCA--T-TATGAAC-TTA-TTA-----CAAAT-----ATT--GAAAA-CAATTAAGGGGGC-ACAACTCTC--TCAAAAT-TCATNGGGG-T-GGATCTAAAAAAAT-CTTTCGTCTTGATTTT-C-AT---A---AAAAACAAAATAA----AACNTTG-AATGA--------A----------A-GAAATAACAAGAA-CTTA-N----AATTAAA-TATTGATGAGATGAATG-ATTC-ATCAACGT-TTG-TTT-A-TTTT----ATT-TATCA--TTTCATAGG--CGTAGGACTGGNTTT-----TGAA-----TGGGGGGG-GGGGGGGGGGGCTA-ACTTTTAAATGTA----TTGACAA
Reference ( family-6543 ) : AAGAGTC-ATTCTCT-GT-AAGCA-TCAA-ACTGGC-TTGGAAATGGCAT-AT-TTCAGATTGCCCT-TATATTTTGTTATATGATT-CACA-ACA-ATAAA-TCTAAAT-T--GTAGCACGTCTT----AAATA-TTTTAAAATGTT-------GTGTG-T--CCAT--GGT-A-A--ATG-ACAC----TTAACATTTCA-CA----TG-T--ATG--GC--CA-TTCTCT-----CCAGG-C-C---A--CA--AAAACA-TTTG-TTT--TT-------C-AAC-A-T-AA----TTGCA--CT-ATTA--TTT--AT-CACATT----A-G-G---TA-TTTTA-AT-TT-TT----GT---TATACA-TGTTGTTTTCTTG-T--TCAC---AA-AAATATGA--TAAAATAATTAAA----AG-TACT-ACAATGAA-TTCG-GT----------CCTAATTA-CTTA---AAAT-TAT-AGCTT-GCATCTTG-A-TGAG-AT---AACCGATACTTTCTTGTTTGGTAT--ACAAAAA-CGCAGG--CAA-TT-A-T-AAGTC-CATA-TGA--TG-TACC-GT-TTAAT-AT-TAGATT-AAAACCTG--TTC-TAA-AGCA-TATAA--AAA--AAAATTGGG--GT--GTT--ATTA-TTATGTAAG-AAAA----AT-T-AAA--T-GATA-TTAA-AATTTGTGCAAAAATTGATAG-----ATTTAGTCAAAA-GCT--CGTTCACAGTTTTATCT-CCCTTGAATAGGTCTA------CGTAAG-CACCGCTC-GCTTTGAACT--GAAC---GATTTTG----CTGAAACAG-GAATAT-GGCAG-AT-ACTT-A-GAATGCACAC---CAAGTTTGCATCTTATTCTTGAA--TTGGAA-GTTTGATGTCAC-ACG-GCAT-CTTT-TTTTCC---ANTCAACTAGG-CCTAG---GCATAG--CGACC---AGGTCTAGGGCT-GCT----TTGTG-GCACCTTTGGCCAC--TGTGCAC-AGCTTCGT-TAGATGTTT--CTGTGGAAACT-GACAG--A--TAACTCG---C--------TT-CATCC--TGT-GTTTT-AAACATTCA-AA---TTACGTTCAATATTT-GAA-CAG-AACACTTTCACATTTTTATGAA---AANT----AATATGC---TATCC-NTCA-A-TCAC-TGANAGAAAT---TACAAAGGTTC--AGTGATCATCCCGGATA-CTG-TATTTATA--TTATTTTCATAAAGTGAGTTTG-NTTTATTTNTAACANTNT---GTAAAG-TAGC-T-AAT-TTC--TAC-TTATGATTTACT-TCCACTTCAA-TAA--AT-TTG--T-T--T--AAAAA-TA--ATAT----TCGT-ATGTAAA-AAATAAAC-TTC---CATATTT-------CAT--T-AT-TGTCATCCA--T-TATGAAC-TTA-TTA-----CAAAT-----ATT--GAAAA-CAATTAAGGGGGC-ACAACTCTC--TCAAAAT-TCATNGGGG-T-GGATCTAAAAAAAT-CTTTCGTCTTGATTTT-C-AT---A---AAAAACAAAATAA----AACNTTG-AATGA--------A----------A-GAAATAACAAGAA-CTTA-N----AATTAAA-TATTGATGAGATGAATG-ATTC-ATCAACGT-TTG-TTT-A-TTTT----ATT-TATCA--TTTCATAGG--CGTAGGACTGGNTTT-----TGAA-----TGGGGGGG-GGGGGGGGGGGCTA-ACTTTTAAATGTA----TTGACAA
gi|1 : AAGA-TC-ATTCTCT-GTTAAGCA-TCAA-ACTGGCGTTGGAAATGGCAT-AT-TTCAGATTGCCCT-TATATGTTTTTATATGATA-CTAA-ACA-GTAAA-TCTAAAT-T--GTAGCACGTCTT----AAATA-TTTT-AAATGTT-------GTGTA-T--CCATC-GGT---A--ATG-ACAT----T---CAGTTCA-CA----TG-T--ATG--GC--CA-TGCTCT-----CTAGG-A-C---A--CA--AAAACA-TTTG-TTT--TT-------C-AAC-A-TAAA----TTGCA--CT-ATTA--TTT--TT-CATATT----A-G-G---TATTTTTA-AT-TT-TT----AT---TACA----GTTGTTTTCTTGTT--TCACTTAAA-AAATA-GA--TATAAT--TTAAA----AG-TACTGACAATG-A-TTCG-TC----------CCTAATTACCTTA---AAAT-TATGAGCTT-GCATCTTG-ATTGAG-AT---AACCGATACTTTCTTATTTGGTAG--ACAAAAA-CGCAGG--CAA-TT-A-T-AAGT--CATAGTAA--TG-TACC-AT-TTAAT-AGATAGATTAAAAACCTG--TTC-TAA-GGCA-TATAA--AAA--AAAATTGGG--G---G-T--ATTA-TTATGTAAG-AAAA----AT-T-AAG--T-GATATTTAA-AATTTGTGCAAAAATTG-TAG-----ATTT-GTCAAAA-GTT--TGTTCACAGTTTTATCTCCCCTTGAATAGGTCTA------CA------ACGGCTG-GCTTTGGACT--GAAT---GATTTTG----TTGAAGCAG-GAATATGGGCAGCATAACTTGA-GAATGCACAC---CAGATTTGCATTTTAATTTTGAAATTTGGAATGTTTGATGTCAC-ACG-GCATGCTTT-TTTTCC---CATCAAC-AGG-CCTAG---GCATAG-----CC---A-GTCT-GGGCA-GCT----TTGTG---ACTTTTGG-CAC--TGTGCAC-AGCTTCGT-TAGATGTTT--CTGTTGAAACT-GACAGAAA--AAACGCC---C--------TTATATCCTTTGTGGTTTTAAAACAATCACAAAGCTT---TTCAATATTTGGAA-CAGAAACACCTTCACATTTTTATGAA---AAAT----AATATGC---TATCG-ATCA-A-TAAC-TGAGAGAAAT---TACAAAGGTTC--AGTGATCATCACGGA-A-CTG-TATTTATACTTTA-TTTCATAAGGTGAGTTTACTTTTATTTTTAACAATTT---GTAAA--TAGCAT-AAT-TTC--TACTTTATAATTTACTGTCCATTTCAA-TAA--AT-TTG--T-T--T--AAAAA-TA--A-AT----T-GT-AT-TGAA-AAATAAACATTC---GATATTT-------CAT--T-AT-TGTCATCCA--T-TATGAAC-TTA-TTA-----CAAATA----ATT--GAAAACCAATTAAGGGGG--ACAACTCTC--TCCAAAC-TCATTGGGG-T-GGATCTAAAAAAAA-ATTTCATCTTGATTTT-C-ATTTAA---AAAAACAAAACAA----AACTTTGAAATGA--------ATGATTTGGCGA-GGAATAACAAGAA-CTTA-A----AATTTAA-TATTG-TGAGATAAATG-ATTC-ATCAACGT-TTGATTT-A-TTTT----ATT-TATCA--TTTCATA-G--CGTAGGAC-GTTCTT-----TAAC-----TGGGGGGG-GGGGGGGGGGGCAA-ACTTTTTAAAGTA----TTTACAA
gi|10 : GGGTC-ACTCTCT-GT-CAGCG-TCAA-ATTGTC-TTGAAAACGACAG-AT-TTCAGATTGCC------------------------ACA--CA-ACACA-TCGAAAT-T--AGAGCTTGTCTTTAAAAGATA-TTTCAAAATGTT-------GTGTG-C--ACAT--AGT-ACA--AGG-ACAA----TT--TGTTTTA-TG----TG-T--ATGTTGT--GACTTTTCT-----CCAGA-T-C---AATC---AAAACA-TTTG-TTTAATT-------C-AACAA-T-AA----
gi|11 : c-TTGAAAACGACAG-AT-TTCAGATTGCC-------------------AT-------ACA-ACACA-TCGAAAT-T--AGAGCTTGTCTTTACAAGATA-TTTCAAAATGTT-------GTGTG-T--ACAT--AAT-ACA--AGG-ACAC----T----GTTTAA-TG----TG-T--ATGTTGT--GACTTTTCT-----CCAGA-T-C---AATC---AAAATA-TTTGTTTT--TT-------C-AACAA-T-AA----TTGAA--GT-ATTA--TTG--AT-TACACT----ATG-G------TTTTA-
gi|12 : AAGAGTCTATTCTCTTGT-AAGCA-TCA---CTGGC-TTGGAAATGGCAT-TT-TTCAGATAGCCCT-GATATTGTTATATATGATTACATA-ACATATAAG-TCTAAAT-T--GTAGCACGTC-T----AAATATTTTTAAAATGTT-------GTGTT-T--CCAT--GGT-A-C--A-A-ACCC----TTAACATTTt
gi|13 : --CTAT--GGT-A-AACATG-ACACTGT-TTAA---TGCA-CAGAGTTG-T---TGT-ACCTCA-TCCATT-----CTAAG-C-CGCTA--CA--AAAATA-TTTG-TTT--TT-------C-AAC---T-AATTATTTGAA--CTAATCAGTTTT--ATACACATTCTAGA-G-G---TA-CTTgctctaatacattatagacacgtaccctggtcac
gi|14 : tttgGAGTC-ATTCTCT-GT-GAGCA-TCAA-ACTGGC-TTGGAAATGGCAT-GT-TTCAGATTGCCCT-TATATTTTGTTATATGATTGCACA-ACA-CAAAG-TCTAAAT-T--GGAGCATCTCTT----AAATA-TTATAGA
gi|16 : GTTT---TTTATTGGTAACATTATCATGTAAAG-CGGC-T-AAT-TAA--TAC---ACGTTCTACT-TCGA--TCAA--AACTAT-TTG--CATAGT--AAAGA-TAAGATAT----T--T-ACTTAAA-AAA-AAAC-TTA---CATGTtaaagtgcatg
gi|17 : CA-TA----TG-T--TTT--GA--C--TTTTCT-----CCAGA-T-C---AA-CC--AAAACA-TTTG-TTT--TTT------C-AAC-AAT-AA----TTGAA--GT-ATTC--TTG--AT-CACTCT----A-G-T---TA-ATTTA-ATATTGTT----CC---TATACA-TGgcaa
gi|2 : atgAAGAGTC-ATTCTCT-GT-AAGCA-TCAA-ACTGGC-TTGGAAATTGGATTATATTCAGATTGCCCTATA-ATTTTGTTATATGATG-C-TA-ACA--TAAG-TCTAAATCT--GTGTTACG-CTT----AAATA-TTT-AAAATGTT-------GCGT--T--CTAT--GGT-A-AGCATGGACAC----TTAACATTTCA-CA----TG-TT-ATG--AC--C--TCCTCTTAGTCCCA---C-C---A--CA--AA--CA-TTT--------T-------C-AAC-A-T-AA----TTGCGAGCT-ATAG--TTT-----CACATT----A-G-AAGTTA-TTTTA--T-TT-TT----GT---TATACA-TGCTGTTTT---G-T---CAT---AA-AAATATGA--TTAAATGATGAAATTAAAG-TACTTACAATGAA-TTCCTGT----------CCTAATTA-CTTA---AAAT--AT-AGCTT-GCTTCTTG-A-TGAG-AC---AACCAAT----TTGTGTTTG-TAT--ACAATAA-CGCAGGGGCAA-TT-A-T-AG---------TGACATG-TACCCGT---AAT-CT-TAGATT-AAAACCTG--TTC-TAA-AGC--CATTA--CAA--GAAATTGGG--TG--GTT--ATTACTTATCTAAG-AAAA----AT-TTAAA--T-GATA-T-----ATTTGTGCAAAAAATGATAA-------TTAGTCAAAG-TCTGTCGTTCACAGTTGT---T-CC--TGA-TAA-TCTATTGATGCATAAG--AC-GTCT-GCGTTGAACTTTGAACAGCGAATTTGTTGGCTGAAACAGTGAATAT-GGCAG-AT-ACTT-A-GAATGCACAC---CAAGTTTGCAT-TTATT-TTGAA-----------TTGATGT-AT-ATG-ATA----TT-TTTTCC---AGTCAA-TAGGATCTAGAGAGCAGAG--TGA-----AG--CTAAAG-T-GCT----T--TG-GCA---TTGGCCAC--TG-GCACGAGCTTCGT-CAGA--TTG--CTGTGTAAACTGGACAG--AATTAATTTGAAACAGAACAAATT-CA--C--T----TTTT-AAAAATGCA-AA---T
gi|2 : gtgtttATTT-GAAACAG-AACAAATTCAC-TTTTTAAAAATGCAAAT----GCTCTGG---TGTCC-TTCA-AATCATAGGACAAAAAT---TTCAAAA--TC--AGTGATCATTCCAGATA-TTG-TATTTATA--TTATTTTCATGAAGTGAGTTTG-C-TTATTTATAACATTAT---GTAAAA-TAGC-T-AA--TTC--TAA-TTATGATTTACT-TCCACTTCAA-TAA--AT-TTG----T--T--AAAAA-TA--ATAT----TTGT-ATGTAAA-AAA-AAAC-TT----CATATTC-------AAT--T-TA-TGTCCT-CA--TGTATGAAC-TTA-TGA-----C-AAT-----ATTTGAAAAA-CAATTAAGGGGG--ACAACT-TC--TC--AAT-TCATAGGGG-TGGGATCTAAAAAAAT-CTTTCGTC-TGATTTT-CAAT---A---AAAA-------AA----AACATTG-AA-------------------------GAATAAGCAGAA-CTTATG----AATCAA------GATGAGATGAATG-ATTC-AACAACCG-TTG-TTT-A-TTGT----ATT-TATTA--TTTC--AGG--CGTAGGACTGGTTAT-----TGAA----------GGG-GGGGGCGGGGGCTA-Agctctggtgtccttcaaatcataggacaaaaatttcaaaatcagtgatcattccagatattgtatttatattattttcatgaagtgagtttgcttatttataacattatgtaaaatagctaattctaattatgatttacttccacttcaataaatttgttaaaaataatatttgtatgtaaaaaaaaacttcatattcaatttatgtcctcatgtatgaacttatgacaatatttgaaaaacaattaagggggacaacttctcaattcataggggtgggatctaaaaaaatctttcgtctgattttcaataaaaaaaaacattgaagaataagcagaacttatgaatcaagatgagatgaatgattcaacaaccgttgtttattgtatttattatttcaggcgtaggactggttattgaaggggggggcgggggctaatgctaataattgcaatata
gi|3 : gtgtttaagagtcattctctgtaagcatcaaactggcttggaaattggattatattcagattgccctataattttgttatatgatgctaacataagtctaaatctgtgttacgcttaaatatttaaaatgttgcgttctatggtaagcatggacacttaacatttcacatgttatgacctcctcttagtcccaccacaaacattttcaacataattgcgagctatagtttcacattagaagttattttatttttgttatacatgctgttttgtcataaaaatatgattaaatgatgaaattaaagtacttacaatgaattcctgtcctaattacttaaaatatagcttgcttcttgatgagacaaccaatttgtgtttgtatacaataacgcaggggcaattatagtgacatgtacccgtaatcttagattaaaacctgttctaaagccattacaagaaattgggtggttattacttatctaagaaaaatttaaatgatatatttgtgcaaaaaatgataattagtcaaagtctgtcgttcacagttgttcctgataatctattgatgcataagacgtctgcgttgaactttgaacagcgaatttgttggctgaaacagtgaatatggcagatacttagaatgcacaccaagtttgcatttattttgaattgatgtatatgatattttttccagtcaataggatctagagagcagagtgaagctaaagtgctttggcattggccactggcacgagcttcgtcagattgctgtgtaaactggacagaattaTC-ATTC-CT-GT-AAGCAATCAACACTGGC-TTGGAAATGGCTT-AT-TTCA-ATAGCCCT--ATATTT-GTATTATGATT--ACATACC-ATAAA-TCTAAAT-T--GTAGCA-GTCT-----AAATA-TTTTTAAATGAT-------GTGTG-TTTCCATTAGGT-A-A--A---ACCC----TTAACATTTCATCA----TG-T--ATG---C--CA-ATCTCT-------AGG-CAC---A--CA--AAAACA-TTTG-TTT--TTT------C-AAA-A-T-AA----TTGCA--CT-ATTA--TTT--TT-CATATT----A-GCG---TA-TTT-A-AT-TT-TTTCCAGT----ATATA-TGTTGTTT-CTTG-TCATTAC---AAGAAATATGA--TAAAATAATTAAA----AG-TACT-ACAATGAA-T-CG-GT----------CCTAATTA-CTTA---AAATATA--AGCTGAGCATCTGGGA-TAGA-AT---AAC-GATA-TTTCTTGTTTGGTAT--ACAAAAAACACAG---CAA-TTTA-T-AAGTT-CATA-T-A--TGGTACC-GTATTAAT----TAGATT-TAAATCCG--GTCGTAAGAGCA--ATAATTAAAGTAATATTGCTTTGT--GTTGTATTA-TTATGTTAG-AAAATTATATAT-AAA--TTGATA-CTAATAATTTGTGCAAACATT-ATAGGATTTATCTAGTCAAAAAGC----GTTCACAGTT--ATCT-CC-TTGATTAGACTTA------TGTAAGTCACCACTCTGCTTTGAACT--GAAT---GATTT-G----CTGAAACAG-GAA----------AT-ACTT-ACGAATGTACACTCCCAAGTTTGCATCTTATTCTTGAA--TTGGAA-GTTT-ATGTCACCACGAGCAT-CTTTGTTTTCCCTTATTCAACTAGT-CATAT----CATAGAACGACCGATAGGTCTAGGGCTTGCTATCTTTGTGAGCACCTTTGGCCACATTTTGCAC-TGCTTCGTCTAG-TGTTTTTCTGTGGAAAC--GACAG--A--TAACTTG---C--------TT-CATCC--TGT-GTTTT-AAACATTCA-AA---TTACGTTTAATA-TT-GAA-CAG-ATAACTTCTACATTTATATGAA---AATC----AAAATGCCA-TATCTGATCATA-TCAC-Ttgctaataattgcaatata
gi|4 : TAAAGCTACC-TTAAT-TTCCCTAA-TTA-GACTTACT-TCCACTTCAAATAA--AT-TTGGGT-T--T--AAAAAATA--ATAT------GT-ATGTAAACAGATAAAC-TTC---CA-AGTT-------CATCTT-AT--GTC--CCACTT-TATGAACCTTA-TT------CAAAT-----ATT--GAAAA-CAATTAAGGGGGCTACAACTCT---TCAAAATATCATAGGGGGT-GGATCTAAAAAACTTCTTTCGTCT-GATTTT-C-AT---A---AAAAATAACAT--------CTT------GA--------A----------A-GAAATAACAAGAAGCTTA-CGTATACTTAAAATATTGATGAGATGAATG-ATTC-ATCAACGTCTTG-TTTTA-TTTTTATTATT-TATC---TTTCATAGG--CGTAGGACTGGGTTT-----TGAA--------AAGGG-GGGGGGGGGGTCTATACTTCTACAT-TAATCTTTGACAA
gi|5 : A-TAA--ATATTG--T-T--T--AAAAA-TA--ATATAAATCCGTTATGTAAA-AAATAAAC-TTCATACGCATTTATGTGCTCAT--TTAT-TGGAATACA--T-TACACAC-TT--TTAGACAACAAATTCTCCATT----AAA-CA--CACGAGGGC-ACAAC-CTCGTTCAAAAT-TCAATGGGG-T-GGATC---AAAAAT-CTTTCTTCT--ATTTTAC-AT---A---AAATACAAAA--------ACATTG---TGA--------A----------AAGAAATA-CAAGA--CTTA-T----AATTAAA-TATTGATGAGATGAATGAATTCTATCAACGT-TTG-TTT-ATTTTT----ATTATATTAATTTTCTTAGGCTCGTTGGACTGGATTTGAAAGCGAAAGCCCTGGAAAAGCGGGGCGGGGGGCTA-ACTTTGAAATATA----tataaaaaaataaaaaaaccgcagaaaaaaccacaaaaaccatcaccacacacagaaggctaaccaaacccaaattggggtcgggggcaatattcttaataaatcactcctaaaaaagggggggggggcatattctattaatcactctcctaaaaagggacagggggggggggggggcaaacacctaatgtgtgtgtggggactttctaaatacatgtttgacaacttacaagcacccaataaaaaaaaagaagtctaaaacaacaaactgctgcaaactgatagcaaaaaaaaaaaaaatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttcacgcctctacccacccctcccatccccctggggccgagttcccgcgaagaattgaatccttcgggtcg
gi|6 : aataaaactcttacacatatatgcatTCTCT-GT-AAGCA-TCAA-ACTGGC-TTGGAAATGGCAT-AT-TTCAGATTGCCCT-TATATTTTGTTATATGATTGCATA-AC--ATAAAGTCTAAAT-T--GTAGCATGTCTT----AAATA-TTTTAAAATGTT-------GTGTT-T--CCAT--GGT-A-AC-ATG-ACAC----TTAACATTTCA-CA----TGTT--ATG--AC--C---TCCCT-----CTAGACC-C---A--TA--AAAACA-TTTA-TTT--TT-------CAAAC-A-T-AA----TTGCA--CT-ATTA--TTT--AT-CACATTA---A-G-G---TA-TTTTATAT-TT-TT----GT---TATACA-TGCTGTTTTCTTG----TCAT---AA-AAATATGA--TGAAATAGTTAAA----AG-TACT-AGAATG-A-TTCA-GT----------CCTAATTA-CTTA---AAA--TAT-AGCTT-GCATCTTG-A-TGAGAAT---AATCAATATTGTCTTGTTCGGTAT--ACAAAAA-CGCAGG--CAA-TT-ATT-AAGTCATACA-TGA--T----CC-G---TAAT-AT-TAGATT-AAAA-CTA--TTC-TAA-AGCA-TAT-A--AAA--AAAATTGGG--GT--G-T--ATTATTTATGTAAG-AAAA-------T-AAATTT-GATA-TTAA-ATTTTGT-TAAAAAGTGATAG-----ATTTAGTCAAAA-G-T--CGTTCACAG--TTATCT-CCCTTGAATAAGTCTA------aattaattctcacatatacaaaaaaaagaacaaaaaaaacaccactgcaatcacacaaagaggctacccaaaaccacaaaatgtgagacaaaccggtaggaagggacaattactatagatactaaaggagagaggggggaggccggcactacaataaattgatgtgtggagagaacttactaagtaatgtgaaaacttaaaagcaaacaaataaaatgaaaagcacaagacatgctaatacacaatgactgcgaacccagtaagtaaaagcaccaaaaaaaaaaaatagcatccaccataacaacacagcagagataggttacggacaacccataacaactagaacaacaccccccgcccctacataccatcttgttagaggttcccctccccctggggcctctgagttccggaaaaagattgaacttccgggttcaag
gi|7 : TTT-GAA-CAG-AACACTCT-ACATTTTTATGAA---AACTTTCAAATGTACGTACATTC-CTCA-A-TTAC-TGAAAGAGATGAATACAT-GGTTCTCAGTGATCATCCC---TATCTGATATTTATA--TAATTT-CAGAAAGTGAGTTTG-ATTTATTTTTAACAATTA---GTAAA---AGC-T-AATATTC--TAC-TTATAATTTACT-TCCACTTCAA-TAA--AA-TTG--T-T--TTAAAAGA-TA--ATAT----TTGT-ATTT-GA-AAATTAAC-TTC---T-TATTT-------CA---C-ATCTATC-TCCATCT-TATGAAC-CTATTTA-----CAAAT-----ATT--GAAAA-CAATTAA-GGGAC-A-AACTCTT--CCAATTT-TCAT--GGG-T-GTATCT--AAGATT-CTTTCATC-TGATTTTCC-AT---AATTAAAAAAAAAATAATAATAAC-TTG-AATGATGAATTTTA----------A-AAAATAAC-AGAA-CTAA-A----AATTAAA-TATTGTTAGAATAAATG-ATT--------G--TTG-TTT-A-ATTT----G-T-TATCA---TTCATAGA--CCTAAGACTG--TTT-----TGAA------GGGGAGG-GGGGAG-------A-ACTTTTGAATGTA----TTGACAAt
gi|8 : ACGTCTT----AAATA-TTTTAAAATGTT-------GTGTA-T--CCAT--GGT-A-AC-ATG-ACAC----CTAACATTTCA-CA----TG-TTTATG--GC--CA-TCCTCT-------AGG-C-C---A--CACAAAAACA-TTTG-TTT--TT-------C-AAC-A-T-AA----TTGCA--CT-ATCA--TTT--TT-CATATT----AGG-G---TT-TTTTA-AT-TT-TT----GT---TATACATTGTTG-TTTCTTG----TCAC---AA-AAATATGATTTAAATTAATTTAA----AGTTACT-ACAATGAATTTCA-GTGTGAAACGTCCCTAAAAA-CTTATTGAAA--TAT-AGCTT-GC-TCTTG-A-TGAG-ATATAAACCGATACTTTTCTGTTTAGCATTAACAAAAACCGCAGG--CAATTT-A-TAAAGTC-CATA-T-A--TG-TACC-A--TTAATAAT-TAGATT-AAAACCTGGTTTC-TAA-AGCATTATAA--AAA--AG----GGG--GTTGGCT--ATTA-TTATGTAAGAAAAA----AT-A-AAA--T-GATA-TT-A-AATTTGTGCAAAAATTG-TAC-----ATTTAGTCAAAA-G-T--CGTTCACAG--TTATCT-C
gi|9 : -ACA-GCACA-TCTAAAT-TAAG-AGCTCGTCTT----------TTTTAAGATATTTCAATTGGTGTGCT--TCAT--GGTAA-A--AGG-ACACTGTTTTAA---TGCA-TA----TG-T--TTT--GA--C--TTTTGT-----CCAGA-TGA---A--CA--ATAACATTTTG-TTT--TTGTTCAAAC-AAT-A-A-GA----TTGAA--GT-ATTC--CTTGAAT-CACTCT----A-G-T---TT-ATTAA-AT-TA-TT----GTTCCTATAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TAAAGCGAGTTTTAAAACCACCACACCTAGCATCAAACGAAATTTCATTGTATATTGTAATTGAGCCTAAACTTTTCTAGATGATGCTACCATACTAAATTAGTATCACGCTTAGTGTTTGAGA
Alignments
lowQualScore : 1111111111111 22222 1111 1111111 2222 1111 111 333333333 11111 111111111111111 2222222 111 1111 1111 111 33333 111 11 1111 1 1 3333333333 111 111 111 11 1 11 111111111111 22222 2222 11 111 11 11 22222222222 1 222222222 11 111111 1 222222 222222 111 1 5555555555555555555555 11 2222 2222 1 2222222222 1 111 222 1 1 333333333 1 1 22 1 222 11 1 3333 6666666666666 111 2222 22 11 11 1 1 11 11 22 77777777777777777777777777777777777777 1 1 22222222 1 1 1 111 2222 333 111 111 1 222 11 222222 1 11 2222 111 22 11 1111111111 333333 1111111 3333333333333333333333333333 222222 22222 111 11 111 22 1 1111111 88888888888888888888888888888888888888888 222222 11 1111 1111 11 22222 4444444444 2222
lowQualScore : 6 5 5 5 5 5 5 5 2 1111111111111 99999 4 66 4 4 66 4 1 7777 4 4444444 99 55 99 4 0000 8 4 5555 11 4 4 8888 4 000 222222222 00000 777777777777777 4 4 55 1111111 4 8 4 4 8888 1 66 4 66 111 4 3333 8 99999999 0 5 5 5 2222 000 6 0 0 00000 444 8 0 11 3 7777 8 6 0 8 0 99 5555555555 8 444 999 88 8 6 8 8 8 444 99 0 11 6 11 8 8 8 8 999999999999 8 88888 2222 8 3 11 8 8 222 6 11 11 6 88888888888 6 8 555555555 11 8 222222 1 0 000000 0 888888 666 0 8 5 9 6 8888888888888888888888 88 4444 7 8888 3 4444444444 3 777 333 2 2 222222222 6 6 3 3 00 3 333 1 44 3 0000 0000000000000 7 999 8888 7 00 00 6 88 7 3 3 44 88 00 00000000000000000000000000000000000000 3 3 55555555 3 0 0 0 1 6 3 777 1 1111 0 111 111 111 0 0 1 333 999 88 111111 3 88 7 7 4444 1 1 1 777 11 8 8 88 11 88 3 8 3 6 99 6 7777777777 6 99 222222 6 6 1 6 7 6 4444444 0000000000000000000000000000 8 8 88 000000 0 88888 444 8 0 88 0 444 5 8 8 8 8 777 1 8 1 11 6 8 9999999 44 0 88888888888888888888888888888888888888888 0 5 88 666666 88 6 8 8 1 33 8 8 8 7777 0 8 2222 6 11 0 88 00000 3333333333 8 1 8 1 6 1111
lowQualScore : . . . . . . . . . ............. ..... . .. . . .. . . .... . ....... .. .. .. . .... . . .... .. . . .... . ... ......... ..... ............... . . .. ....... . . . . .... . .. . .. ... . .... . ........ . . . . .... ... . . . ..... ... . . .. . .... . . . . . .. .......... . ... ... .. . . . . . ... .. . .. . .. . . . . ............ . ..... .... . . .. . . ... . .. .. . ........... . . ......... .. . ...... . . ...... . ...... ... . . . . . ...................... .. .... . .... . .......... . ... ... . . ......... . . . . .. . ... . .. . .... ............. . ... .... . .. .. . .. . . . .. .. .. ...................................... . . ........ . . . . . . . ... . .... . ... ... ... . . . ... ... .. ...... . .. . . .... . . . ... .. . . .. .. .. . . . . .. . .......... . .. ...... . . . . . . ....... ............................ . . .. ...... . ..... ... . . .. . ... . . . . . ... . . . .. . . ....... .. . ......................................... . . .. ...... .. . . . . .. . . . .... . . .... . .. . .. ..... .......... . . . . . ....
lowQualScore : 7 7 7 7 7 0 0 0 5 6666666666666 55555 4 99 4 4 11 4 4 0000 0 4444444 11 55 55 0 4444 0 0 5555 55 1 0 5555 0 666 111111111 00000 222222222222222 0 0 55 0000000 0 0 0 0 5555 1 11 4 11 222 4 9999 9 99999999 4 0 7 7 1111 000 7 8 8 44444 000 0 8 00 8 0000 0 0 6 0 8 44 0000000000 0 000 444 88 0 0 0 0 0 000 00 6 00 0 00 0 0 0 0 000000000000 0 66666 2222 0 2 00 0 0 666 0 00 00 0 22222222222 0 0 888888888 00 0 222222 0 6 888888 8 000000 888 8 0 0 8 5 1111111111111111111111 33 0000 3 3333 3 3333333333 3 777 333 0 0 777777777 7 7 3 3 77 3 333 0 00 3 0000 3333333333333 3 777 3333 3 00 33 7 33 3 3 3 77 33 77 00000000000000000000000000000000000000 3 3 88888888 2 0 0 0 2 5 2 555 0 2222 8 222 222 000 2 0 0 333 333 33 000000 3 33 3 3 2222 0 0 0 555 22 0 0 88 00 88 8 0 2 7 22 7 8888888888 7 22 000000 7 7 7 7 3 7 3333333 2222222222222222222222222222 0 0 88 888888 8 00000 222 0 8 00 8 222 6 0 8 0 0 000 0 0 4 22 0 0 0000000 00 6 00000000000000000000000000000000000000000 8 6 88 000000 88 0 0 0 0 66 0 0 0 0000 8 0 6666 0 00 8 88 00000 2222222222 0 0 0 2 5 2222
consensus : AAGAGTC-ATTCTCT-GT-AAGCA-TCAA-ACTGGC-TTGGAAATGGCAT-AT-TTCAGATTGCCCT-TATATTTTGTTATATGATT-CACA-ACA-ATAAA-TCTAAAT-T--GTAGCACGTCTT----AAATA-TTTTAAAATGTT-------GTGTG-T--CCAT--GGT-A-A--ATG-ACAC----TTAACATTTCA-CA----TG-T--ATG--GC--CA-TTCTCT-----CCAGG-C-C---A--CA--AAAACA-TTTG-TTT--TT-------C-AAC-A-T-AA----TTGCA--CT-ATTA--TTT--AT-CACATT----A-G-G---TA-TTTTA-AT-TT-TT----GT---TATACA-TGTTGTTTTCTTG-T--TCAC---AA-AAATATGA--TAAAATAATTAAA----AG-TACT-ACAATGAA-TTCG-GT----------CCTAATTA-CTTA---AAAT-TAT-AGCTT-GCATCTTG-A-TGAG-AT---AACCGATACTTTCTTGTTTGGTAT--ACAAAAA-CGCAGG--CAA-TT-A-T-AAGTC-CATA-TGA--TG-TACC-GT-TTAAT-AT-TAGATT-AAAACCTG--TTC-TAA-AGCA-TATAA--AAA--AAAATTGGG--GT--GTT--ATTA-TTATGTAAG-AAAA----AT-T-AAA--T-GATA-TTAA-AATTTGTGCAAAAATTGATAG-----ATTTAGTCAAAA-GCT--CGTTCACAGTTTTATCT-CCCTTGAATAGGTCTA------CGTAAG--AC-GCTC-GCTTTGAACT--GAAC---GATTTTG----CTGAAACAG-GAATAT-GGCAG-AT-ACTT-A-GAATGCACAC---CAAGTTTGCATCTTATTCTTGAA--TTGGAA-GTTTGATGTCAC-ACG-GCAT-CTTT-TTTTCC---ANTCAACTAGG-CCTAG---GCATAG--CGACC---AGGTCTAGGGCT-GCT----TTGTG-GCACCTTTGGCCAC--TGTGCAC-AGCTTCGT-TAGATGTTT--CTGTGGAAACT-GACAG--A--TAACTCG---C--------TT-CATCC--TGT-GTTTT-AAACATTCA-AA---TTACGTTCAATATTT-GAA-CAG-AACACTTTCACATTTTTATGAA---AANT----AATATGC---TATCC-NTCA-A-TCAC-TGANAGAAAT---TACAAAGGTTC--AGTGATCATCCCGGATA-CTG-TATTTATA--TTATTTTCATAAAGTGAGTTTG-NTTTATTTNTAACANTNT---GTAAAG-TAGC-T-AAT-TTC--TAC-TTATGATTTACT-TCCACTTCAA-TAA--AT-TTG--T-T--T--AAAAA-TA--ATAT----TCGT-ATGTAAA-AAATAAAC-TTC---CATATTT-------CAT--T-AT-TGTCATCCA--T-TATGAAC-TTA-TTA-----CAAAT-----ATT--GAAAA-CAATTAAGGGGGC-ACAACTCTC--TCAAAAT-TCATNGGGG-T-GGATCTAAAAAAAT-CTTTCGTCTTGATTTT-C-AT---A---AAAAACAAAATAA----AACNTTG-AATGA--------A----------A-GAAATAACAAGAA-CTTA-N----AATTAAA-TATTGATGAGATGAATG-ATTC-ATCAACGT-TTG-TTT-A-TTTT----ATT-TATCA--TTTCATAGG--CGTAGGACTGGNTTT-----TGAA-----TGGGGGGG-GGGGGGGGGGGCTA-ACTTTTAAATGTA----TTGACAA
Reference ( family-6543 ) : AAGAGTC-ATTCTCT-GT-AAGCA-TCAA-ACTGGC-TTGGAAATGGCAT-AT-TTCAGATTGCCCT-TATATTTTGTTATATGATT-CACA-ACA-ATAAA-TCTAAAT-T--GTAGCACGTCTT----AAATA-TTTTAAAATGTT-------GTGTG-T--CCAT--GGT-A-A--ATG-ACAC----TTAACATTTCA-CA----TG-T--ATG--GC--CA-TTCTCT-----CCAGG-C-C---A--CA--AAAACA-TTTG-TTT--TT-------C-AAC-A-T-AA----TTGCA--CT-ATTA--TTT--AT-CACATT----A-G-G---TA-TTTTA-AT-TT-TT----GT---TATACA-TGTTGTTTTCTTG-T--TCAC---AA-AAATATGA--TAAAATAATTAAA----AG-TACT-ACAATGAA-TTCG-GT----------CCTAATTA-CTTA---AAAT-TAT-AGCTT-GCATCTTG-A-TGAG-AT---AACCGATACTTTCTTGTTTGGTAT--ACAAAAA-CGCAGG--CAA-TT-A-T-AAGTC-CATA-TGA--TG-TACC-GT-TTAAT-AT-TAGATT-AAAACCTG--TTC-TAA-AGCA-TATAA--AAA--AAAATTGGG--GT--GTT--ATTA-TTATGTAAG-AAAA----AT-T-AAA--T-GATA-TTAA-AATTTGTGCAAAAATTGATAG-----ATTTAGTCAAAA-GCT--CGTTCACAGTTTTATCT-CCCTTGAATAGGTCTA------CGTAAG--AC-GCTC-GCTTTGAACT--GAAC---GATTTTG----CTGAAACAG-GAATAT-GGCAG-AT-ACTT-A-GAATGCACAC---CAAGTTTGCATCTTATTCTTGAA--TTGGAA-GTTTGATGTCAC-ACG-GCAT-CTTT-TTTTCC---ANTCAACTAGG-CCTAG---GCATAG--CGACC---AGGTCTAGGGCT-GCT----TTGTG-GCACCTTTGGCCAC--TGTGCAC-AGCTTCGT-TAGATGTTT--CTGTGGAAACT-GACAG--A--TAACTCG---C--------TT-CATCC--TGT-GTTTT-AAACATTCA-AA---TTACGTTCAATATTT-GAA-CAG-AACACTTTCACATTTTTATGAA---AANT----AATATGC---TATCC-NTCA-A-TCAC-TGANAGAAAT---TACAAAGGTTC--AGTGATCATCCCGGATA-CTG-TATTTATA--TTATTTTCATAAAGTGAGTTTG-NTTTATTTNTAACANTNT---GTAAAG-TAGC-T-AAT-TTC--TAC-TTATGATTTACT-TCCACTTCAA-TAA--AT-TTG--T-T--T--AAAAA-TA--ATAT----TCGT-ATGTAAA-AAATAAAC-TTC---CATATTT-------CAT--T-AT-TGTCATCCA--T-TATGAAC-TTA-TTA-----CAAAT-----ATT--GAAAA-CAATTAAGGGGGC-ACAACTCTC--TCAAAAT-TCATNGGGG-T-GGATCTAAAAAAAT-CTTTCGTCTTGATTTT-C-AT---A---AAAAACAAAATAA----AACNTTG-AATGA--------A----------A-GAAATAACAAGAA-CTTA-N----AATTAAA-TATTGATGAGATGAATG-ATTC-ATCAACGT-TTG-TTT-A-TTTT----ATT-TATCA--TTTCATAGG--CGTAGGACTGGNTTT-----TGAA-----TGGGGGGG-GGGGGGGGGGGCTA-ACTTTTAAATGTA----TTGACAA
gi|1 : AAGA-TC-ATTCTCT-GTTAAGCA-TCAA-ACTGGCGTTGGAAATGGCAT-AT-TTCAGATTGCCCT-TATATGTTTTTATATGATA-CTAA-ACA-GTAAA-TCTAAAT-T--GTAGCACGTCTT----AAATA-TTTT-AAATGTT-------GTGTA-T--CCATC-GGT---A--ATG-ACAT----T---CAGTTCA-CA----TG-T--ATG--GC--CA-TGCTCT-----CTAGG-A-C---A--CA--AAAACA-TTTG-TTT--TT-------C-AAC-A-TAAA----TTGCA--CT-ATTA--TTT--TT-CATATT----A-G-G---TATTTTTA-AT-TT-TT----AT---TACA----GTTGTTTTCTTGTT--TCACTTAAA-AAATA-GA--TATAAT--TTAAA----AG-TACTGACAATG-A-TTCG-TC----------CCTAATTACCTTA---AAAT-TATGAGCTT-GCATCTTG-ATTGAG-AT---AACCGATACTTTCTTATTTGGTAG--ACAAAAA-CGCAGG--CAA-TT-A-T-AAGT--CATAGTAA--TG-TACC-AT-TTAAT-AGATAGATTAAAAACCTG--TTC-TAA-GGCA-TATAA--AAA--AAAATTGGG--G---G-T--ATTA-TTATGTAAG-AAAA----AT-T-AAG--T-GATATTTAA-AATTTGTGCAAAAATTG-TAG-----ATTT-GTCAAAA-GTT--TGTTCACAGTTTTATCTCCCCTTGAATAGGTCTA------C----A--ACGGCTG-GCTTTGGACT--GAAT---GATTTTG----TTGAAGCAG-GAATATGGGCAGCATAACTTGA-GAATGCACAC---CAGATTTGCATTTTAATTTTGAAATTTGGAATGTTTGATGTCAC-ACG-GCATGCTTT-TTTTCC---CATCAAC-AGG-CCTAG---GCATAG-----CC---A-GTCT-GGGCA-GCT----TTGTG---ACTTTTGG-CAC--TGTGCAC-AGCTTCGT-TAGATGTTT--CTGTTGAAACT-GACAGAAA--AAACGCC---C--------TTATATCCTTTGTGGTTTTAAAACAATCACAAAGCTT---TTCAATATTTGGAA-CAGAAACACCTTCACATTTTTATGAA---AAAT----AATATGC---TATCG-ATCA-A-TAAC-TGAGAGAAAT---TACAAAGGTTC--AGTGATCATCACGGA-A-CTG-TATTTATACTTTA-TTTCATAAGGTGAGTTTACTTTTATTTTTAACAATTT---GTAAA--TAGCAT-AAT-TTC--TACTTTATAATTTACTGTCCATTTCAA-TAA--AT-TTG--T-T--T--AAAAA-TA--A-AT----T-GT-AT-TGAA-AAATAAACATTC---GATATTT-------CAT--T-AT-TGTCATCCA--T-TATGAAC-TTA-TTA-----CAAATA----ATT--GAAAACCAATTAAGGGGG--ACAACTCTC--TCCAAAC-TCATTGGGG-T-GGATCTAAAAAAAA-ATTTCATCTTGATTTT-C-ATTTAA---AAAAACAAAACAA----AACTTTGAAATGA--------ATGATTTGGCGA-GGAATAACAAGAA-CTTA-A----AATTTAA-TATTG-TGAGATAAATG-ATTC-ATCAACGT-TTGATTT-A-TTTT----ATT-TATCA--TTTCATA-G--CGTAGGAC-GTTCTT-----TAAC-----TGGGGGGG-GGGGGGGGGGGCAA-ACTTTTTAAAGTA----TTTACAA
gi|10 : GGGTC-ACTCTCT-GT-CAGCG-TCAA-ATTGTC-TTGAAAACGACAG-AT-TTCAGATTGCC------------------------ACA--CA-ACACA-TCGAAAT-T--AGAGCTTGTCTTTAAAAGATA-TTTCAAAATGTT-------GTGTG-C--ACAT--AGT-ACA--AGG-ACAA----TT--TGTTTTA-TG----TG-T--ATGTTGT--GACTTTTCT-----CCAGA-T-C---AATC---AAAACA-TTTG-TTTAATT-------C-AACAA-T-AA----
gi|11 : c-TTGAAAACGACAG-AT-TTCAGATTGCC-------------------AT-------ACA-ACACA-TCGAAAT-T--AGAGCTTGTCTTTACAAGATA-TTTCAAAATGTT-------GTGTG-T--ACAT--AAT-ACA--AGG-ACAC----T----GTTTAA-TG----TG-T--ATGTTGT--GACTTTTCT-----CCAGA-T-C---AATC---AAAATA-TTTGTTTT--TT-------C-AACAA-T-AA----TTGAA--GT-ATTA--TTG--AT-TACACT----ATG-G------TTTTA-
gi|12 : AAGAGTCTATTCTCTTGT-AAGCA-TCA---CTGGC-TTGGAAATGGCAT-TT-TTCAGATAGCCCT-GATATTGTTATATATGATTACATA-ACATATAAG-TCTAAAT-T--GTAGCACGTC-T----AAATATTTTTAAAATGTT-------GTGTT-T--CCAT--GGT-A-C--A-A-ACCC----TTAACATTTt
gi|13 : --CTAT--GGT-A-AACATG-ACACTGT-TTAA---TGCA-CAGAGTTG-T---TGT-ACCTCA-TCCATT-----CTAAG-C-CGCTA--CA--AAAATA-TTTG-TTT--TT-------C-AAC---T-AATTATTTGAA--CTAATCAGTTTT--ATACACATTCTAGA-G-G---TA-CTTgctctaatacattatagacacgtaccctggtcac
gi|14 : tttgGAGTC-ATTCTCT-GT-GAGCA-TCAA-ACTGGC-TTGGAAATGGCAT-GT-TTCAGATTGCCCT-TATATTTTGTTATATGATTGCACA-ACA-CAAAG-TCTAAAT-T--GGAGCATCTCTT----AAATA-TTATAGA
gi|16 : GTTT---TTTATTGGTAACATTATCATGTAAAG-CGGC-T-AAT-TAA--TAC---ACGTTCTACT-TCGA--TCAA--AACTAT-TTG--CATAGT--AAAGA-TAAGATAT----T--T-ACTTAAA-AAA-AAAC-TTA---CATGTtaaagtgcatg
gi|17 : CA-TA----TG-T--TTT--GA--C--TTTTCT-----CCAGA-T-C---AA-CC--AAAACA-TTTG-TTT--TTT------C-AAC-AAT-AA----TTGAA--GT-ATTC--TTG--AT-CACTCT----A-G-T---TA-ATTTA-ATATTGTT----CC---TATACA-TGgcaa
gi|2 : atgAAGAGTC-ATTCTCT-GT-AAGCA-TCAA-ACTGGC-TTGGAAATTGGATTATATTCAGATTGCCCTATA-ATTTTGTTATATGATG-C-TA-ACA--TAAG-TCTAAATCT--GTGTTACG-CTT----AAATA-TTT-AAAATGTT-------GCGT--T--CTAT--GGT-A-AGCATGGACAC----TTAACATTTCA-CA----TG-TT-ATG--AC--C--TCCTCTTAGTCCCA---C-C---A--CA--AA--CA-TTT--------T-------C-AAC-A-T-AA----TTGCGAGCT-ATAG--TTT-----CACATT----A-G-AAGTTA-TTTTA--T-TT-TT----GT---TATACA-TGCTGTTTT---G-T---CAT---AA-AAATATGA--TTAAATGATGAAATTAAAG-TACTTACAATGAA-TTCCTGT----------CCTAATTA-CTTA---AAAT--AT-AGCTT-GCTTCTTG-A-TGAG-AC---AACCAAT----TTGTGTTTG-TAT--ACAATAA-CGCAGGGGCAA-TT-A-T-AG---------TGACATG-TACCCGT---AAT-CT-TAGATT-AAAACCTG--TTC-TAA-AGC--CATTA--CAA--GAAATTGGG--TG--GTT--ATTACTTATCTAAG-AAAA----AT-TTAAA--T-GATA-T-----ATTTGTGCAAAAAATGATAA-------TTAGTCAAAG-TCTGTCGTTCACAGTTGT---T-CC--TGA-TAA-TCTATTGATGCATAAG--AC-GTCT-GCGTTGAACTTTGAACAGCGAATTTGTTGGCTGAAACAGTGAATAT-GGCAG-AT-ACTT-A-GAATGCACAC---CAAGTTTGCAT-TTATT-TTGAA-----------TTGATGT-AT-ATG-ATA----TT-TTTTCC---AGTCAA-TAGGATCTAGAGAGCAGAG--TGA-----AG--CTAAAG-T-GCT----T--TG-GCA---TTGGCCAC--TG-GCACGAGCTTCGT-CAGA--TTG--CTGTGTAAACTGGACAG--AATTAATTTGAAACAGAACAAATT-CA--C--T----TTTT-AAAAATGCA-AA---T
gi|2 : gtgtttATTT-GAAACAG-AACAAATTCAC-TTTTTAAAAATGCAAAT----GCTCTGG---TGTCC-TTCA-AATCATAGGACAAAAAT---TTCAAAA--TC--AGTGATCATTCCAGATA-TTG-TATTTATA--TTATTTTCATGAAGTGAGTTTG-C-TTATTTATAACATTAT---GTAAAA-TAGC-T-AA--TTC--TAA-TTATGATTTACT-TCCACTTCAA-TAA--AT-TTG----T--T--AAAAA-TA--ATAT----TTGT-ATGTAAA-AAA-AAAC-TT----CATATTC-------AAT--T-TA-TGTCCT-CA--TGTATGAAC-TTA-TGA-----C-AAT-----ATTTGAAAAA-CAATTAAGGGGG--ACAACT-TC--TC--AAT-TCATAGGGG-TGGGATCTAAAAAAAT-CTTTCGTC-TGATTTT-CAAT---A---AAAA-------AA----AACATTG-AA-------------------------GAATAAGCAGAA-CTTATG----AATCAA------GATGAGATGAATG-ATTC-AACAACCG-TTG-TTT-A-TTGT----ATT-TATTA--TTTC--AGG--CGTAGGACTGGTTAT-----TGAA----------GGG-GGGGGCGGGGGCTA-Agctctggtgtccttcaaatcataggacaaaaatttcaaaatcagtgatcattccagatattgtatttatattattttcatgaagtgagtttgcttatttataacattatgtaaaatagctaattctaattatgatttacttccacttcaataaatttgttaaaaataatatttgtatgtaaaaaaaaacttcatattcaatttatgtcctcatgtatgaacttatgacaatatttgaaaaacaattaagggggacaacttctcaattcataggggtgggatctaaaaaaatctttcgtctgattttcaataaaaaaaaacattgaagaataagcagaacttatgaatcaagatgagatgaatgattcaacaaccgttgtttattgtatttattatttcaggcgtaggactggttattgaaggggggggcgggggctaatgctaataattgcaatata
gi|3 : gtgtttaagagtcattctctgtaagcatcaaactggcttggaaattggattatattcagattgccctataattttgttatatgatgctaacataagtctaaatctgtgttacgcttaaatatttaaaatgttgcgttctatggtaagcatggacacttaacatttcacatgttatgacctcctcttagtcccaccacaaacattttcaacataattgcgagctatagtttcacattagaagttattttatttttgttatacatgctgttttgtcataaaaatatgattaaatgatgaaattaaagtacttacaatgaattcctgtcctaattacttaaaatatagcttgcttcttgatgagacaaccaatttgtgtttgtatacaataacgcaggggcaattatagtgacatgtacccgtaatcttagattaaaacctgttctaaagccattacaagaaattgggtggttattacttatctaagaaaaatttaaatgatatatttgtgcaaaaaatgataattagtcaaagtctgtcgttcacagttgttcctgataatctattgatgcataagacgtctgcgttgaactttgaacagcgaatttgttggctgaaacagtgaatatggcagatacttagaatgcacaccaagtttgcatttattttgaattgatgtatatgatattttttccagtcaataggatctagagagcagagtgaagctaaagtgctttggcattggccactggcacgagcttcgtcagattgctgtgtaaactggacagaattaTC-ATTC-CT-GT-AAGCAATCAACACTGGC-TTGGAAATGGCTT-AT-TTCA-ATAGCCCT--ATATTT-GTATTATGATT--ACATACC-ATAAA-TCTAAAT-T--GTAGCA-GTCT-----AAATA-TTTTTAAATGAT-------GTGTG-TTTCCATTAGGT-A-A--A---ACCC----TTAACATTTCATCA----TG-T--ATG---C--CA-ATCTCT-------AGG-CAC---A--CA--AAAACA-TTTG-TTT--TTT------C-AAA-A-T-AA----TTGCA--CT-ATTA--TTT--TT-CATATT----A-GCG---TA-TTT-A-AT-TT-TTTCCAGT----ATATA-TGTTGTTT-CTTG-TCATTAC---AAGAAATATGA--TAAAATAATTAAA----AG-TACT-ACAATGAA-T-CG-GT----------CCTAATTA-CTTA---AAATATA--AGCTGAGCATCTGGGA-TAGA-AT---AAC-GATA-TTTCTTGTTTGGTAT--ACAAAAAACACAG---CAA-TTTA-T-AAGTT-CATA-T-A--TGGTACC-GTATTAAT----TAGATT-TAAATCCG--GTCGTAAGAGCA--ATAATTAAAGTAATATTGCTTTGT--GTTGTATTA-TTATGTTAG-AAAATTATATAT-AAA--TTGATA-CTAATAATTTGTGCAAACATT-ATAGGATTTATCTAGTCAAAAAGC----GTTCACAGTT--ATCT-CC-TTGATTAGACTTA------TGTAAGTCACCACTCTGCTTTGAACT--GAAT---GATTT-G----CTGAAACAG-GAA----------AT-ACTT-ACGAATGTACACTCCCAAGTTTGCATCTTATTCTTGAA--TTGGAA-GTTT-ATGTCACCACGAGCAT-CTTTGTTTTCCCTTATTCAACTAGT-CATAT----CATAGAACGACCGATAGGTCTAGGGCTTGCTATCTTTGTGAGCACCTTTGGCCACATTTTGCAC-TGCTTCGTCTAG-TGTTTTTCTGTGGAAAC--GACAG--A--TAACTTG---C--------TT-CATCC--TGT-GTTTT-AAACATTCA-AA---TTACGTTTAATA-TT-GAA-CAG-ATAACTTCTACATTTATATGAA---AATC----AAAATGCCA-TATCTGATCATA-TCAC-Ttgctaataattgcaatata
gi|4 : TAAAGCTACC-TTAAT-TTCCCTAA-TTA-GACTTACT-TCCACTTCAAATAA--AT-TTGGGT-T--T--AAAAAATA--ATAT------GT-ATGTAAACAGATAAAC-TTC---CA-AGTT-------CATCTT-AT--GTC--CCACTT-TATGAACCTTA-TT------CAAAT-----ATT--GAAAA-CAATTAAGGGGGCTACAACTCT---TCAAAATATCATAGGGGGT-GGATCTAAAAAACTTCTTTCGTCT-GATTTT-C-AT---A---AAAAATAACAT--------CTT------GA--------A----------A-GAAATAACAAGAAGCTTA-CGTATACTTAAAATATTGATGAGATGAATG-ATTC-ATCAACGTCTTG-TTTTA-TTTTTATTATT-TATC---TTTCATAGG--CGTAGGACTGGGTTT-----TGAA--------AAGGG-GGGGGGGGGGTCTATACTTCTACAT-TAATCTTTGACAA
gi|5 : A-TAA--ATATTG--T-T--T--AAAAA-TA--ATATAAATCCGTTATGTAAA-AAATAAAC-TTCATACGCATTTATGTGCTCAT--TTAT-TGGAATACA--T-TACACAC-TT--TTAGACAACAAATTCTCCATT----AAA-CA--CACGAGGGC-ACAAC-CTCGTTCAAAAT-TCAATGGGG-T-GGATC---AAAAAT-CTTTCTTCT--ATTTTAC-AT---A---AAATACAAAA--------ACATTG---TGA--------A----------AAGAAATA-CAAGA--CTTA-T----AATTAAA-TATTGATGAGATGAATGAATTCTATCAACGT-TTG-TTT-ATTTTT----ATTATATTAATTTTCTTAGGCTCGTTGGACTGGATTTGAAAGCGAAAGCCCTGGAAAAGCGGGGCGGGGGGCTA-ACTTTGAAATATA----tataaaaaaataaaaaaaccgcagaaaaaaccacaaaaaccatcaccacacacagaaggctaaccaaacccaaattggggtcgggggcaatattcttaataaatcactcctaaaaaagggggggggggcatattctattaatcactctcctaaaaagggacagggggggggggggggcaaacacctaatgtgtgtgtggggactttctaaatacatgtttgacaacttacaagcacccaataaaaaaaaagaagtctaaaacaacaaactgctgcaaactgatagcaaaaaaaaaaaaaatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttcacgcctctacccacccctcccatccccctggggccgagttcccgcgaagaattgaatccttcgggtcg
gi|6 : aataaaactcttacacatatatgcatTCTCT-GT-AAGCA-TCAA-ACTGGC-TTGGAAATGGCAT-AT-TTCAGATTGCCCT-TATATTTTGTTATATGATTGCATA-AC--ATAAAGTCTAAAT-T--GTAGCATGTCTT----AAATA-TTTTAAAATGTT-------GTGTT-T--CCAT--GGT-A-AC-ATG-ACAC----TTAACATTTCA-CA----TGTT--ATG--AC--C---TCCCT-----CTAGACC-C---A--TA--AAAACA-TTTA-TTT--TT-------CAAAC-A-T-AA----TTGCA--CT-ATTA--TTT--AT-CACATTA---A-G-G---TA-TTTTATAT-TT-TT----GT---TATACA-TGCTGTTTTCTTG----TCAT---AA-AAATATGA--TGAAATAGTTAAA----AG-TACT-AGAATG-A-TTCA-GT----------CCTAATTA-CTTA---AAA--TAT-AGCTT-GCATCTTG-A-TGAGAAT---AATCAATATTGTCTTGTTCGGTAT--ACAAAAA-CGCAGG--CAA-TT-ATT-AAGTCATACA-TGA--T----CC-G---TAAT-AT-TAGATT-AAAA-CTA--TTC-TAA-AGCA-TAT-A--AAA--AAAATTGGG--GT--G-T--ATTATTTATGTAAG-AAAA-------T-AAATTT-GATA-TTAA-ATTTTGT-TAAAAAGTGATAG-----ATTTAGTCAAAA-G-T--CGTTCACAG--TTATCT-CCCTTGAATAAGTCTA------aattaattctcacatatacaaaaaaaagaacaaaaaaaacaccactgcaatcacacaaagaggctacccaaaaccacaaaatgtgagacaaaccggtaggaagggacaattactatagatactaaaggagagaggggggaggccggcactacaataaattgatgtgtggagagaacttactaagtaatgtgaaaacttaaaagcaaacaaataaaatgaaaagcacaagacatgctaatacacaatgactgcgaacccagtaagtaaaagcaccaaaaaaaaaaaatagcatccaccataacaacacagcagagataggttacggacaacccataacaactagaacaacaccccccgcccctacataccatcttgttagaggttcccctccccctggggcctctgagttccggaaaaagattgaacttccgggttcaag
gi|7 : TTT-GAA-CAG-AACACTCT-ACATTTTTATGAA---AACTTTCAAATGTACGTACATTC-CTCA-A-TTAC-TGAAAGAGATGAATACAT-GGTTCTCAGTGATCATCCC---TATCTGATATTTATA--TAATTT-CAGAAAGTGAGTTTG-ATTTATTTTTAACAATTA---GTAAA---AGC-T-AATATTC--TAC-TTATAATTTACT-TCCACTTCAA-TAA--AA-TTG--T-T--TTAAAAGA-TA--ATAT----TTGT-ATTT-GA-AAATTAAC-TTC---T-TATTT-------CA---C-ATCTATC-TCCATCT-TATGAAC-CTATTTA-----CAAAT-----ATT--GAAAA-CAATTAA-GGGAC-A-AACTCTT--CCAATTT-TCAT--GGG-T-GTATCT--AAGATT-CTTTCATC-TGATTTTCC-AT---AATTAAAAAAAAAATAATAATAAC-TTG-AATGATGAATTTTA----------A-AAAATAAC-AGAA-CTAA-A----AATTAAA-TATTGTTAGAATAAATG-ATT--------G--TTG-TTT-A-ATTT----G-T-TATCA---TTCATAGA--CCTAAGACTG--TTT-----TGAA------GGGGAGG-GGGGAG-------A-ACTTTTGAATGTA----TTGACAAt
gi|8 : ACGTCTT----AAATA-TTTTAAAATGTT-------GTGTA-T--CCAT--GGT-A-AC-ATG-ACAC----CTAACATTTCA-CA----TG-TTTATG--GC--CA-TCCTCT-------AGG-C-C---A--CACAAAAACA-TTTG-TTT--TT-------C-AAC-A-T-AA----TTGCA--CT-ATCA--TTT--TT-CATATT----AGG-G---TT-TTTTA-AT-TT-TT----GT---TATACATTGTTG-TTTCTTG----TCAC---AA-AAATATGATTTAAATTAATTTAA----AGTTACT-ACAATGAATTTCA-GTGTGAAACGTCCCTAAAAA-CTTATTGAAA--TAT-AGCTT-GC-TCTTG-A-TGAG-ATATAAACCGATACTTTTCTGTTTAGCATTAACAAAAACCGCAGG--CAATTT-A-TAAAGTC-CATA-T-A--TG-TACC-A--TTAATAAT-TAGATT-AAAACCTGGTTTC-TAA-AGCATTATAA--AAA--AG----GGG--GTTGGCT--ATTA-TTATGTAAGAAAAA----AT-A-AAA--T-GATA-TT-A-AATTTGTGCAAAAATTG-TAC-----ATTTAGTCAAAA-G-T--CGTTCACAG--TTATCT-C
gi|9 : -ACA-GCACA-TCTAAAT-TAAG-AGCTCGTCTT----------TTTTAAGATATTTCAATTGGTGTGCT--TCAT--GGTAA-A--AGG-ACACTGTTTTAA---TGCA-TA----TG-T--TTT--GA--C--TTTTGT-----CCAGA-TGA---A--CA--ATAACATTTTG-TTT--TTGTTCAAAC-AAT-A-A-GA----TTGAA--GT-ATTC--CTTGAAT-CACTCT----A-G-T---TT-ATTAA-AT-TA-TT----GTTCCTATAC
blockSeqs : T T . A C . T A C GATATTGTTATA TACAT T TA G C AA G T TAAA T TCAATTG GC TT TA A AAC G G TGTT TA T T GAGT T TTA TTGTGAC TAGTC GCCGCTACA T T AA GTTCAAA A A A . TTAT A AG A GT GAA A CTAG T AAGTTA T A G TCCA TCC T TCAT . G TT G TTAA T T A T CT GTGAAACGTC . TTG TAT T A T G . A ATA AT TA A GG T T T A CATACATGA G GTAT AAT . C GT G G ATT T TT GT A TTGTGTTGT C A TTATATAT TT T CTAAT A A GATTTA TCTGT TTG . C T A TTGATGCATAAGACGTCT TT CAGC T TTGG T TATGGCAG . AC TCC C C TTGGAA G C C A T G CTT G CT A AGAG AACGACCGATAGG A CTT ATCT T AG CC C AT T G C A TT TG AATTAATTTGAAACAGAACAAATTCACT . . TTACG T . A . A C A TGC A TTCA GTA TGA AA A C GAA AA TC AGATA A . T T GAT G T A CAT GC . T TA CC T C . C A CT A CATAGT A AG AAATCC T T A C T . CATACGC ATGTGCTCATTTATTGGAATACA G C AT AGACAA TCTCC TGA . CT CGT A A A G G TAA A T G T A A AATT AT TAATAATAACTTGAATGATGAATTTTAA C AG CGTAT AA A A T A TC . T T TATT A AATT A CT GT GAAAG AGCCCTGGAA C T T A A ATCT
blockSeqs : . . . . . . . . C TATATTTTGTTA TGCAC . A . . . G T TACA . . G . . . AGC G . TGT TA C . . . TA TTGTGAC . GCCACACA . . . T . A . . . A . . . A . A G CGTA . . . . . . T . . . A . . . A . G . . . T T . A . . . . AC . C . . . . . TCATATA . CGT CT . T . . . AT A . . T GTTGGCT T . ATTT . . TTAA T A A AGC TT . . A G TGTAAGTCACCACTCT . T . . . . . A . . . . . . . . . . . T T . . TGAAG A T . . G . C . . . . T . . ATAACTTGCTTCATCCTGT . . T . . . T T A . T . CA CT TA . A . GG . TAT . . T . GC A T A . G . . T . T T . C . . . GGTTT . . TT . G A . T . ACAT CATCTTATGTCCCACT . . A A . G . C C A . A . . TAA C . G T C . A AC ACATTGTGAAAA A A TG A A . . T G . . . . . AT T . GG . GGGG . T . A G .
blockSeqs : . . . . . . . . C ATAATTTTGTTA TGCAT . A . . . T C . . . G . . . CA T . . TA C . . . A TACCTCA . ATCAATC . . . T . . . . . A . . . A . . . GTA . . . . . . T . . . A . . . A . A . . . T T . A . . . . A . . . . . . . CCATATA . AT AT . C . . . C A . . A TGGTT . . ATA . . TTA G A A GT T . . . . . . . . T . . . C . . CC A . T T A T . A . . T . T T . C . . . TTTTA . . TT . G A . T . CAT CACATCTATCTCCATC . . A A . G . C T A . T . . T A . T T . . A AA AAAACATTGAA A A T A A . . T T . . . . . T A . GA . AA . T . G . .
blockSeqs : . . . . . . . . C TATATTTTGTTA GCT . C . . . G T . . . T . . . CA T . . TA C . . . A GCCA . ATCAATC . . . . . . . . . C . . . A . . . TTA . . . . . . T . . . A . . . . . A . . . T . . . . . . . . . . . . . . . TGACA . G . . . . . . A . . . . GTGT . . T . . T T . . GT T . . . . . . . . . . . . . TTT . . T . G A . . . CCA AATTTATGTCCTCA . . . . . . . . . . . . . . . T . A T . . A . TCTTGAAA . . A . T . . . . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . . C ATATTTGTAT TAC . A . . . T C . . . G . . . AC T . . TA C . . . T GAC . ATCAACC . . . . . . . . . C . . . T . . . GTA . . . . . . . . . TT . . . . T . . . . CTT
blockSeqs : . . . . . . . . . AC . A . . . T T . . . T . . . AC T . . TA C . . . A ACC . GCACACA . . . . . . . . . C . . . A . . . GTT . . . . .
blockSeqs : . . . . . . . G . . . T C . . . A . . . C G . . TA . . . . A CCA . ACCCATA . . . . . . . . . C . . . T . . . TTT .
blockSeqs : . . . . . . C . . . . . . . A . . . T . . . . T ACC . ATGAACA . . . . . . . . . A . . . . . . . G
blockSeqs : . . . . . . A . . . . . . . . . GAC . CCACA . . . . . . . . .
blockSeqCons : TGCAC ** AC** TA GCC****** ATCAACN******** GTA***** T**** *** T** T* CCATACA***** GT*** T*** AC* GTTGGT***** ATT****** TTA*** GT**** T** G* T* TTT******* CT**** CNT**** ACATTTATGTCCTAC************* ***** C* T* A****** AT** GGG*******
originalCons : AAGAGTC-ATTCTCT-GT-AAGCA-TCAA-ACTGGC-TTGGAAATGGCAT-AT-TTCAGATTGCCCT-TATATTTTGTTATATGATT-CACA-ACA-ATAAA-TCTAAAT-T--GTAGCACGTCTT----AAATA-TTTTAAAATGTT-------GTGTG-T--CCAT--GGT-A-A--ATG-ACAC----TTAACATTTCA-CA----TG-T--ATG--GC--CA-TTCTCT-----CCAGG-C-C---A--CA--AAAACA-TTTG-TTT--TT-------C-AAC-A-T-AA----TTGCA--CT-ATTA--TTT--AT-CACATT----A-G-G---TA-TTTTA-AT-TT-TT----GT---TATACA-TGTTGTTTTCTTG-T--TCAC---AA-AAATATGA--TAAAATAATTAAA----AG-TACT-ACAATGAA-TTCG-GT----------CCTAATTA-CTTA---AAAT-TAT-AGCTT-GCATCTTG-A-TGAG-AT---AACCGATACTTTCTTGTTTGGTAT--ACAAAAA-CGCAGG--CAA-TT-A-T-AAGTC-CATA-TGA--TG-TACC-GT-TTAAT-AT-TAGATT-AAAACCTG--TTC-TAA-AGCA-TATAA--AAA--AAAATTGGG--GT--GTT--ATTA-TTATGTAAG-AAAA----AT-T-AAA--T-GATA-TTAA-AATTTGTGCAAAAATTGATAG-----ATTTAGTCAAAA-GCT--CGTTCACAGTTTTATCT-CCCTTGAATAGGTCTA------CGTAAG--AC-GCTC-GCTTTGAACT--GAAC---GATTTTG----CTGAAACAG-GAATAT-GGCAG-AT-ACTT-A-GAATGCACAC---CAAGTTTGCATCTTATTCTTGAA--TTGGAA-GTTTGATGTCAC-ACG-GCAT-CTTT-TTTTCC---ANTCAACTAGG-CCTAG---GCATAG--CGACC---AGGTCTAGGGCT-GCT----TTGTG-GCACCTTTGGCCAC--TGTGCAC-AGCTTCGT-TAGATGTTT--CTGTGGAAACT-GACAG--A--TAACTCG---C--------TT-CATCC--TGT-GTTTT-AAACATTCA-AA---TTACGTTCAATATTT-GAA-CAG-AACACTTTCACATTTTTATGAA---AANT----AATATGC---TATCC-NTCA-A-TCAC-TGANAGAAAT---TACAAAGGTTC--AGTGATCATCCCGGATA-CTG-TATTTATA--TTATTTTCATAAAGTGAGTTTG-NTTTATTTNTAACANTNT---GTAAAG-TAGC-T-AAT-TTC--TAC-TTATGATTTACT-TCCACTTCAA-TAA--AT-TTG--T-T--T--AAAAA-TA--ATAT----TCGT-ATGTAAA-AAATAAAC-TTC---CATATTT-------CAT--T-AT-TGTCATCCA--T-TATGAAC-TTA-TTA-----CAAAT-----ATT--GAAAA-CAATTAAGGGGGC-ACAACTCTC--TCAAAAT-TCATNGGGG-T-GGATCTAAAAAAAT-CTTTCGTCTTGATTTT-C-AT---A---AAAAACAAAATAA----AACNTTG-AATGA--------A----------A-GAAATAACAAGAA-CTTA-N----AATTAAA-TATTGATGAGATGAATG-ATTC-ATCAACGT-TTG-TTT-A-TTTT----ATT-TATCA--TTTCATAGG--CGTAGGACTGGNTTT-----TGAA-----TGGGGGGG-GGGGGGGGGGGCTA-ACTTTTAAATGTA----TTGACAA
finalCons : AAGAGTC-ATTCTCT-GT-AAGCA-TCAA-ACTGGC-TTGGAAATGGCAT-AT-TTCAGATTGCCCT-TATATTTTGTTATATGATTGCACA-ACA-ATAAA-TCTAAAT-T--GTAGCACGTCTT----AAATA-TTTTAAAATGTT-------GTGTG-T--CCAT--GGT-AAC--ATG-ACAC----TTAACATTTCA-CA----TG-T--ATGGCC------TTCTCT-----CCAGATCAACN--------AAAACA-TTTG-TTT--TT-------C-AAC-A-T-AA----TTGCA--CT-ATTA--TTT--AT-CACATT----A-GGTA-----TTTTA-AT-TT-TT----GT---TATACA-TGTTGTTTTCTTGT----CAC---AA-AAATATGA--TAAAATAATTAAA----AG-TACT-ACAATGAA-TTCG-GT----------CCTAATTA-CTTA---AAAT--AT-AGCTT-GCATCTTG-A-TGAG-AT---AACCGATACTTTCTTGTTTGGTAT--ACAAAAA-CGCAGG--CAA-TT-A-T-AAGTCCATACA-----TG-TACCGT---TAATT---TAGATT-AAAACCTG--TTC-TAA-AGCAC-ATAA--AAA--AAAATTGGGGTTGGT-----ATTA-TTATGTAAG-AAAAATT------AAA--T-GATATTA---AATTTGTGCAAAAATTGATAG-----ATTTAGTCAAAAGT----CGTTCACAGT--TATCT-CCCTTGAATAGGTCTA------CGTAAG--AC-GCTC-GCTTTGAACT--GAAC---GATTTTG----CTGAAACAG-GAATAT-GGCAG-AT-ACTT-A-GAATGCACAC---CAAGTTTGCATCTTATTCTTGAA--TTGGAA-GTTTGATGTCAC-ACG-GCAT-CTTT-TTTTCC---ANTCAACTAGG-CCTAG---GCATAG--CGACC---AGGTCTAGGGCT-GCT----TTGTG-GCACCTTTGGCCAC--TGTGCAC-AGCTTCGT-TAGATGTTT--CTGTGGAAACT-GACAG--A--TAACTCG---C--------TT-CATCC--TGT-GTTTT-AAACATTCA-AA---TTACGTTCAATATTT-GAA-CAG-AACACTTTCACATTTTTATGAA---AANT----AATATGC---TATCC-NTCA-A-TCAC-TGANAGAAAT---TACAAAGGTTC--AGTGATCATCCCGGATA-CTG-TATTTATA--TTATTTTCATAAAGTGAGTTTG-NTTTATTTNTAACANTNT---GTAAAG-TAGC-T-AAT-TTC--TACT-TATGATTTACT-TCCACTTCAA-TAA--AT-TTGTTT-------AAAAA-TA--ATATCT----GT-ATGTAAA-AAATAAAC-TTCNT----ATTTACATTTATGTCCTAC-------------T-TATGAAC-TTA-TTA-----CAAAT-----ATT--GAAAA-CAATTAAGGGGGC-ACAACTCTC--TCAAAAT-TCATNGGGG-T-GGATCTAAAAAAAT-CTTTCGTCT-GATTTT-C-ATA------AAAAACAAAATAA----AACNTTG-AATGA--------A----------A-GAAATAACAAGAA-CTTA-N----AATTAAA-TATTGATGAGATGAATG-ATTC-ATCAACGT-TTG-TTT-A-TTTT----ATT-TATCAT--TTCATAGG--CGTAGGACTGGNTTT-----TGAAGGG-------GGG-GGGGGGGGGGGCTA-ACTTTTAAATGTA----TTGACAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TAAAGCGAGTTTTAAAACCACCACACCTAGCATCAAACGAAATTTCATTGTATATTGTAATTGAGCCTAAACTTTTCTAGATGATGCTACCATACTAAATTAGTATCACGCTTAGTGTTTGAGA
Alignments
lowQualScore : 1111111111111 1111111 222 1111 1111111 1111 11111111 2222 11 1111111 1 1111 111 1111 1111 111 11 2222222 11 1111 1 3333333333 111 111 11 1 11 11 111 1111 333333 11 11 111 11 11 222222222222 1 22222222 11 1111111 1 222222 111 11 22 55555555555555555555555 11 2222 33333 1 2222222222 1 111 222 1 1 333333333 1 1 22 1 222 11 1 3333 6666666666666 111 2222 22 11 11 1 1 11 11 22 11 777777777777777777777777777777777 1 22222222222 1 1 1 111 2222 333 111 111 1 222 11 222222 1 11 2222 111 22 11 1111111111 33333 22 2222 11 22 22222222 222222 11 111 1 1111111 88888888888888888888888888888888888888888 222222 11 1111 1111 11 22222 444444444444444 2222
lowQualScore : 6 5 5 5 5 5 5 5 2 1111111111111 1111111 222 4 4 66 4 1 7777 4 4444444 99 55 99 6666 4 99999999 4 8888 99 55 1111 55 777 3 4 33 1 4 4 8 55 7777777 4 2 2222 1 66 4 66 111 4 3333 8 99999 55 5 5 5 2222 000 6 0 0 11 4444444 8 0 11 3 7777 8 6 999 0 99 5555555555 8 444 8 8 8 8 6 8 8 8 444 0 8 3 11 6 11 8 8 8 88 88 222 8 8888 8 555555 11 11 8 8 888 6 11 11 6 999999999999 6 8 99999999 11 8 4444444 8 1 0 000000 0 444 8 11 55 3 6 88888888888888888888888 88 4444 55555 3 4444444444 3 777 333 2 2 222222222 6 6 3 3 00 3 333 1 44 3 0000 0000000000000 7 999 8888 7 00 00 6 88 7 3 3 44 88 00 88 777777777777777777777777777777777 3 11111111111 3 0 0 0 1 6 3 777 1 1111 0 111 111 111 0 0 1 333 999 88 111111 3 88 7 7 4444 1 1 1 777 11 8 8 88 11 88 3 8 3 6 99 6 7777777777 6 3 00000 6 6 1 6 7 6 99 0 11 8 1111 8 11 8 8 0 0 8 22 8 99999999 333333 88 0 444 5 8 8 8 8 777 1 8 1 8 6 8 9999999 44 0 88888888888888888888888888888888888888888 0 5 88 666666 88 6 8 8 1 33 8 8 8 7777 0 8 2222 6 11 0 3 00000 777777777777777 1 8 1 6 1111
lowQualScore : . . . . . . . . . ............. ....... ... . . .. . . .... . ....... .. .. .. .... . ........ . .... .. .. .... .. ... . . .. . . . . .. ....... . . .... . .. . .. ... . .... . ..... .. . . . .... ... . . . .. ....... . . .. . .... . . ... . .. .......... . ... . . . . . . . . ... . . . .. . .. . . . .. .. ... . .... . ...... .. .. . . ... . .. .. . ............ . . ........ .. . ....... . . . ...... . ... . .. .. . . ....................... .. .... ..... . .......... . ... ... . . ......... . . . . .. . ... . .. . .... ............. . ... .... . .. .. . .. . . . .. .. .. .. ................................. . ........... . . . . . . . ... . .... . ... ... ... . . . ... ... .. ...... . .. . . .... . . . ... .. . . .. .. .. . . . . .. . .......... . . ..... . . . . . . .. . .. . .... . .. . . . . . .. . ........ ...... .. . ... . . . . . ... . . . . . . ....... .. . ......................................... . . .. ...... .. . . . . .. . . . .... . . .... . .. . . ..... ............... . . . . ....
lowQualScore : 7 7 7 7 7 0 0 0 5 6666666666666 6666666 444 4 4 11 4 4 0000 0 4444444 11 55 55 8888 0 33333333 0 5555 55 11 0000 11 000 9 5 55 0 0 0 0 55 0000000 0 0 5555 1 11 4 11 222 4 9999 9 66666 44 0 7 7 1111 000 7 8 8 00 4444444 0 8 00 8 0000 0 0 666 8 44 0000000000 0 000 0 0 0 0 0 0 0 0 000 8 2 2 00 0 00 0 0 0 88 22 444 0 0000 0 000000 22 00 0 0 444 0 00 00 0 222222222222 0 0 66666666 00 0 4444444 0 0 6 888888 8 000 0 00 00 2 5 11111111111111111111111 33 0000 77777 3 3333333333 3 777 333 0 0 777777777 7 7 3 3 77 3 333 0 00 3 0000 3333333333333 3 777 3333 3 00 33 7 33 3 3 3 77 33 77 33 333333333333333333333333333333333 3 22222222222 2 0 0 0 2 5 2 555 0 2222 8 222 222 000 2 0 0 333 333 33 000000 3 33 3 3 2222 0 0 0 555 22 0 0 88 00 88 8 0 2 7 22 7 8888888888 7 2 33333 7 7 7 7 3 7 00 8 66 0 4444 0 00 0 0 8 8 0 00 0 00000000 000000 00 8 222 6 0 8 0 0 000 0 0 4 0 0 0 0000000 00 6 00000000000000000000000000000000000000000 8 6 88 000000 88 0 0 0 0 66 0 0 0 0000 8 0 6666 0 00 8 8 00000 666666666666666 0 0 2 5 2222
consensus : AAGAGTC-ATTCTCT-GT-AAGCA-TCAA-ACTGGC-TTGGAAATGGCAT-AT-TTCAGATTGCCCT-TATATTTTGTTATATGATTGCAC--AACA-NTAAA-TCTAAAT-T--GTAGCACGTCTT----AAATA-TTTTAAAATGTT-------GTGTG-T--CCAT--GGTAA-CATG-ACACT----TAACATTTCA-CA----TG--T-ATG----GCC-TTCTC---TCCAGGCCA--ACAA-AAACA-TTTG-TTT--TT-------C-AAC-ATAA----TTGCA--CT-ATTA--TTT--AT-CACATT----A-G-G---TATTTT-A-AT-TT-TT----GT---TATACA-TGTTGTTTTCTTGT--CA---C---AA-AAATATGA--TAAAATAATTAAA----AG-TACT-ACAATGAA-TTCG-GT----------CCTAATTAC-TTA---AAAT-AT-A-GCTT-GCATCTTG-AT-GAG-AT---AACCGATACTTTCTTGTTTGGTAT--ACAAAAA-CGCA--GGCAA-TT-A-T-AAGTCCATAC--ATG-TACCGT--T-AATA-T--TAGATTAAAA-CCTG--TTC-TAA-AGCA-TATAA--AAA--AAAATTG----GGGTTGG-TATTA-TTATGTAAG-AAAA----A-T-TAAA--T-GATATT--AA--ATTTGTG-CAAAAATTGATAG-----ATTTAGTCAAAA---GTC-GTTCACAGTT--ATCTCCC-TTGAATAGGTCTA------CGTAAG--AC-G-CTC-GCTTTGAAC--TGAA---CGATTTT----GCTGAAACAG-GAATATGG-CAG-ATA-CTT-A-GAATGCACAC---CAAGTTTGCATCTTATTCTTGAA--TTGGAA-GTTTGATGTCAC-ACG-GCAT-CTTT-TTTTCC---ANTCAACTAGG-CCTAG---GCATAG--CGA-C---AG-TCTAGGGCT-GCT----TTGTG-GCACCTTTGGCCAC--TGTGCAC-AGCTTCGT-TAGATGTTT--CTGTGGAAACT-GACAGA--TAA--CTCG---C--------TT-CATCCT--GTG-TTTTAAA-CATTCA--AA--TTACGTTCAATATTTG-AA-CAGAA-CACTTTCACATTTTTATGAA---AANT----AATATGC---TATCC-NTCA-A-TCAC-TGANAGAAAT---TACAAAGGTTC--AGTGATCATCCCGGATA-CTG-TATTTATA--TTATTTTCATAAAGTGAGTTTG-NTTTATTTNTAACANTNT---GTAAAG-TAGC-T-AAT-TTC--TAC-TTATGATTTACT-TCCACTTCAA-TAA--AT-TTG--T-T--T--AAAAA-TAATAT-----TGT-ATGTAAA-AAATAAAC-TTC-ATATTT-ACAT-TTATGTCCTCAC-TT-AT--GAAC-TTA-TTACAAAT-ATTT-GAAAA-CAA--------TTAA------GGGGGC-ACAACTCTC--TCAAAAT-TCATNGGGG-T-GGATCTAAAAAAAT-CTTTCGTC-TGATTTT-C-AT---A---AAAAACAAAATAA----AACNTTG-AATGA--------A----------A-GAAATAACAAGAA-CTTA-N----AATTAAA-TATTGATGAGATGAATG-ATTC-ATCAACGT-TTG-TTT-A-TTTT----ATT-TATCA--TTTCATAGG--CGTAGGACTGGNTTT-----TGAA---GG----GG----GGGGGGGGGGGGGCTA-ACTTTTAAATGTA----TTGACAA
Reference ( family-6543 ) : AAGAGTC-ATTCTCT-GT-AAGCA-TCAA-ACTGGC-TTGGAAATGGCAT-AT-TTCAGATTGCCCT-TATATTTTGTTATATGATTGCAC--AACA-ATAAA-TCTAAAT-T--GTAGCACGTCTT----AAATA-TTTTAAAATGTT-------GTGTG-T--CCAT--GGTAA-CATG-ACACT----TAACATTTCA-CA----TG--T-ATG----GCC-TTCTC---TCCAGATCA--ACNA-AAACA-TTTG-TTT--TT-------C-AAC-ATAA----TTGCA--CT-ATTA--TTT--AT-CACATT----A-G-G---TATTTT-A-AT-TT-TT----GT---TATACA-TGTTGTTTTCTTGT--CA---C---AA-AAATATGA--TAAAATAATTAAA----AG-TACT-ACAATGAA-TTCG-GT----------CCTAATTAC-TTA---AAAT-AT-A-GCTT-GCATCTTG-AT-GAG-AT---AACCGATACTTTCTTGTTTGGTAT--ACAAAAA-CGCA--GGCAA-TT-A-T-AAGTCCATAC--ATG-TACCGT--T-AAT--T--TAGATTAAAA-CCTG--TTC-TAA-AGCA-CATAA--AAA--AAAATTG----GGGTTGG-TATTA-TTATGTAAG-AAAA----A-T-TAAA--T-GATATT--AA--ATTTGTG-CAAAAATTGATAG-----ATTTAGTCAAAA---GTC-GTTCACAGTT--ATCTCCC-TTGAATAGGTCTA------CGTAAG--AC-G-CTC-GCTTTGAAC--TGAA---CGATTTT----GCTGAAACAG-GAATATGG-CAG-ATA-CTT-A-GAATGCACAC---CAAGTTTGCATCTTATTCTTGAA--TTGGAA-GTTTGATGTCAC-ACG-GCAT-CTTT-TTTTCC---ANTCAACTAGG-CCTAG---GCATAG--CGACC---AGGTCTAGGGCT-GCT----TTGTG-GCACCTTTGGCCAC--TGTGCAC-AGCTTCGT-TAGATGTTT--CTGTGGAAACT-GACAGA--TAA--CTCG---C--------TT-CATCCT--GTG-TTTTAAA-CATTCA--AA--TTACGTTCAATATTTG-AA-CAGAA-CACTTTCACATTTTTATGAA---AANT----AATATGC---TATCC-NTCA-A-TCAC-TGANAGAAAT---TACAAAGGTTC--AGTGATCATCCCGGATA-CTG-TATTTATA--TTATTTTCATAAAGTGAGTTTG-NTTTATTTNTAACANTNT---GTAAAG-TAGC-T-AAT-TTC--TAC-TTATGATTTACT-TCCACTTCAA-TAA--AT-TTG--T-T--T--AAAAA-TAATAT----CTGT-ATGTAAA-AAATAAAC-TTC-NTATTT-ACAT-TTATGTCCT-AC-TT-AT--GAAC-TTA-TTACAAAT-ATT--GAAAA-CAA--------TTAA------GGGGGC-ACAACTCTC--TCAAAAT-TCATNGGGG-T-GGATCTAAAAAAAT-CTTTCGTC-TGATTTT-C-AT---A---AAAAACAAAATAA----AACNTTG-AATGA--------A----------A-GAAATAACAAGAA-CTTA-N----AATTAAA-TATTGATGAGATGAATG-ATTC-ATCAACGT-TTG-TTT-A-TTTT----ATT-TATCA--TTTCATAGG--CGTAGGACTGGNTTT-----TGAA---GG----GG----GGGGGGGGGGGGGCTA-ACTTTTAAATGTA----TTGACAA
gi|1 : AAGA-TC-ATTCTCT-GTTAAGCA-TCAA-ACTGGCGTTGGAAATGGCAT-AT-TTCAGATTGCCCT-TATATGTTTTTATATGAT---ACTAAACA-GTAAA-TCTAAAT-T--GTAGCACGTCTT----AAATA-TTTTAAA-TGTT-------GTGTA-T--CCATC-GGTAA---TG-ACATT-------CAGTTCA-CA----TG--T-ATG----GCCATGCTC---TCTAGGACA---CAA-AAACA-TTTG-TTT--TT-------C-AAC-ATAAA---TTGCA--CT-ATTA--TTT--TT-CATATT----A-G-G---TATTTTTA-AT-TT-TT----AT---TACA----GTTGTTTTCTTGTTTCA---CTTAAA-AAATA-GA--TATAAT--TTAAA----AG-TACTGACAATGA--TTCG-TC----------CCTAATTACCTTA---AAATTATGA-GCTT-GCATCTTG-ATTGAG-AT---AACCGATACTTTCTTATTTGGTAG--ACAAAAA-CGCA--GGCAA-TT-A-T-AAGTC-ATAGTAATG-TACCAT--TTAAT--AGATAGATTAAAAACCTG--TTC-TAA-GGCA-TATAA--AAA--AAAATTG----GGG---G-TATTA-TTATGTAAG-AAAA----A-T-TAAG--T-GATATTTAAA--ATTTGTG-CAAAAATTG-TAG-----ATTT-GTCAAAA---GTTTGTTCACAGTTTTATCTCCCCTTGAATAGGTCTA------CA------AC-GGCTG-GCTTTGGAC--TGAA---TGATTTT----GTTGAAGCAG-GAATATGGGCAGCATAACTTGA-GAATGCACAC---CAGATTTGCATTTTAATTTTGAAATTTGGAATGTTTGATGTCAC-ACG-GCATGCTTT-TTTTCC---CATCAAC-AGG-CCTAG---GCATAG--C---C---AG-TCT-GGGCA-GCT----TTGTG---ACTTTTGGC-AC--TGTGCAC-AGCTTCGT-TAGATGTTT--CTGTTGAAACT-GACAGA--AAAAACGCC---C--------TTATATCCTTTGTGGTTTTAAAACAATCACAAAGCTT---TTCAATATTTGGAA-CAGAAACACCTTCACATTTTTATGAA---AAAT----AATATGC---TATCG-ATCA-A-TAAC-TGAGAGAAAT---TACAAAGGTTC--AGTGATCATCACGGA-A-CTG-TATTTATACTTTA-TTTCATAAGGTGAGTTTACTTTTATTTTTAACAATTT---GTAAA--TAGCAT-AAT-TTC--TACTTTATAATTTACTGTCCATTTCAA-TAA--AT-TTG--T-T--T--AAAAA-TAA-AT-----TGT-AT-TGAA-AAATAAACATTCGATATTT--CAT-TATTGTCAT-CCATT-AT--GAAC-TTA-TTACAAATAATT--GAAAACCAA--------TTAA------GGGGG--ACAACTCTC--TCCAAAC-TCATTGGGG-T-GGATCTAAAAAAAA-ATTTCATCTTGATTTT-C-ATTTAA---AAAAACAAAACAA----AACTTTGAAATGA--------ATGATTTGGCGA-GGAATAACAAGAA-CTTA-A----AATTTAA-TATTG-TGAGATAAATG-ATTC-ATCAACGT-TTGATTT-A-TTTT----ATT-TATCA--TTTCATA-G--CGTAGGAC--GTTCT-----TTAACTGGG----GG----GGGGGGGGGGGGGCAA-ACTTTTTAAAGTA----TTTACAA
gi|10 : GGGTC-ACTCTCT-GT-CAGCG-TCAA-ATTGTC-TTGAAAACGACAG-AT-TTCAGATTGCC----------------------ACAC--AACA-C---A-TCGAAAT-T--AGAGCTTGTCTTTAAAAGATA-TTTCAAAATGTT-------GTGTG-C--ACAT--AGTAC-AAGG-ACAAT----T--TGTTTTA-TG----TG--T-ATGTTGTGAC-TTTTC---TCCAGATCA--ATCA-AAACA-TTTG-TTTAATT-------C-AACAATAA----
gi|11 : c-TTGAAAACGACAG-AT-TTCAGATTGCC-------------------AT--------ACA-ACACA-TCGAAAT-T--AGAGCTTGTCTTTACAAGATA-TTTCAAAATGTT-------GTGTG-T--ACAT--AATAC-AAGG-ACACT--------GTTTAA-TG----TG--T-ATGTTGTGAC-TTTTC---TCCAGATCA--ATCA-AAATA-TTTGTTTT--TT-------C-AACAATAA----TTGAA--GT-ATTA--TTG--AT-TACACT----ATG-G-----TTTT-A-
gi|12 : AAGAGTCTATTCTCTTGT-AAGCA-TCA---CTGGC-TTGGAAATGGCAT-TT-TTCAGATAGCCCT-GATATTGTTATATATGATTACAT--AACATATAAG-TCTAAAT-T--GTAGCACGTC-T----AAATATTTTTAAAATGTT-------GTGTT-T--CCAT--GGT-A-CA-A-ACCCT----TAACATTTt
gi|13 : --CTAT--GGTAAACATG-ACACTGTT-TAA---TGCA-CAGAGTTG--T--TGT---ACC-TCATCCATTCTAAGCCGCTACAA-AAATA-TTTG-TTT--TT-------C-AAC--TAATTATTTGAA--CTAATCAGTTTT--ATACACATTCTAGA-G-G---TACTTgctctaatacattatagacacgtaccctggtcac
gi|14 : tttgGAGTC-ATTCTCT-GT-GAGCA-TCAA-ACTGGC-TTGGAAATGGCAT-GT-TTCAGATTGCCCT-TATATTTTGTTATATGATTGCAC--AACA-CAAAG-TCTAAAT-T--GGAGCATCTCTT----AAATA-TTATAGA
gi|16 : GTTT---TTTATTGGTAACATTATCATGTAAAG-CGGC-T-AAT-TAA--TAC---ACGTTCTACT-TCGA--TCAA--AACTAT-TTG--CATAGT--AAAGA-TAAGAT----ATTT-ACTTAAA-AAA-AAAC-TTtaaagtgcatg
gi|17 : CA-TA----TG--T-TTT----GAC-TTTTC---TCCAGATCA--ACCA-AAACA-TTTGTTTT--TT-------C-AACAATAA----TTGAA--GT-ATTC--TTG--AT-CACTCT----A-G-T---TAATTT-A-ATATTGTT----CC---TATACA-TGacatgtgcaa
gi|2 : atgAAGAGTC-ATTCTCT-GT-AAGCA-TCAA-ACTGGC-TTGGAAATTGGATTATATTCAGATTGCCCTATA-ATTTTGTTATATGAT-GC-T--AACA--TAAG-TCTAAATCT--GTGTTACG-CTT----AAATA-TTT-AAAATGTT-------GCGT--T--CTAT--GGTAAGCATGGACACT----TAACATTTCA-CA----TG--TTATG----ACC-TCCTC---TT-AGTCCC--ACCACAAACA-TTT--------T-------C-AAC-ATAA----TTGCGAGCT-ATAG--TTT-----CACATT----A-G-AAGTTATTTT-A--T-TT-TT----GT---TATACA-TGCTGTTTT---GT--CA---T---AA-AAATATGA--TTAAATGATGAAATTAAAG-TACTTACAATGAA-TTCCTGT----------CCTAATTAC-TTA---AAAT-AT-A-GCTT-GCTTCTTG-AT-GAG-AC---AACCAA----TTTGTGTTT-GTAT--ACAATAA-CGCAGGGGCAA-TT-A-T--AGT---GAC--ATG-TACCCG--T-AATC-T--TAGATTAAAA-CCTG--TTC-TAA-AGC--CATTA--CAA--GAAATTG----GG--TGGTTATTACTTATCTAAG-AAAA----ATT-TAAA--T-GATAT-------ATTTGTG-CAAAAAATGATAA-------TTAGTCAAAGTCTGTC-GTTCACAGTT--GT-TCC---TG-ATA-ATCTATTGATGCATAAG--AC-G-TCT-GCGTTGAACTTTGAACAGCGAATTTGTTGGCTGAAACAGTGAATATGG-CAG-ATA-CTT-A-GAATGCACAC---CAAGTTTGCAT-TTATT-TTGAA-----------TTGATGT-AT-ATG-ATA----TT-TTTTCC---AGTCAA-TAGGATCTAGAGAGCAGAG--TGA-----AG--CTAAAG-T-GCT----T--TG-GCA---TTGGCCAC--TG-GCACGAGCTTCGT-CAGA--TTG--CTGTGTAAACTGGACAGAATTAA--TTTGAAACAGAACAAATT-CA--CT------TTTTAAA-AATGCA--AA--T
gi|2 : gtgtttATTTG-AAACAGAA-CAAATTCAC-TTTTTAAAAATGCAAAT----GCTCTGG---TGTCC-TTCA-AATCATAGGACAAAAAT---TTCAAAA--TC--AGTGATCATTCCAGATA-TTG-TATTTATA--TTATTTTCATGAAGTGAGTTTG-C-TTATTTATAACATTAT---GTAAAA-TAGC-T-AA--TTC--TAA-TTATGATTTACT-TCCACTTCAA-TAA--AT-TTG----T--T--AAAAA-TAATAT----TTGT-ATGTAAA-AAA-AAAC-TTC-ATATTC-A-AT-TTATGTCCTCAT-GT-AT--GAAC-TTA-TGAC-AAT-ATTTGAAAAA-CAA--------TTAA------GGGGG--ACAACT-TC--TC--AAT-TCATAGGGG-TGGGATCTAAAAAAAT-CTTTCGTC-TGATTTT-CAAT---A---AAAA-------AA----AACATTG-AA-------------------------GAATAAGCAGAA-CTTATG----AATCAA------GATGAGATGAATG-ATTC-AACAACCG-TTG-TTT-A-TTGT----ATT-TATTA--TTTC--AGG--CGTAGGACTGGTTAT-----TGAA----------G----GGGGGGGCGGGGGCTA-Agctctggtgtccttcaaatcataggacaaaaatttcaaaatcagtgatcattccagatattgtatttatattattttcatgaagtgagtttgcttatttataacattatgtaaaatagctaattctaattatgatttacttccacttcaataaatttgttaaaaataatatttgtatgtaaaaaaaaacttcatattcaatttatgtcctcatgtatgaacttatgacaatatttgaaaaacaattaagggggacaacttctcaattcataggggtgggatctaaaaaaatctttcgtctgattttcaataaaaaaaaacattgaagaataagcagaacttatgaatcaagatgagatgaatgattcaacaaccgttgtttattgtatttattatttcaggcgtaggactggttattgaaggggggggcgggggctaatgctaataattgcaatata
gi|3 : gtgtttaagagtcattctctgtaagcatcaaactggcttggaaattggattatattcagattgccctataattttgttatatgatgctaacataagtctaaatctgtgttacgcttaaatatttaaaatgttgcgttctatggtaagcatggacacttaacatttcacatgttatgacctcctcttagtcccaccacaaacattttcaacataattgcgagctatagtttcacattagaagttattttatttttgttatacatgctgttttgtcataaaaatatgattaaatgatgaaattaaagtacttacaatgaattcctgtcctaattacttaaaatatagcttgcttcttgatgagacaaccaatttgtgtttgtatacaataacgcaggggcaattatagtgacatgtacccgtaatcttagattaaaacctgttctaaagccattacaagaaattgggtggttattacttatctaagaaaaatttaaatgatatatttgtgcaaaaaatgataattagtcaaagtctgtcgttcacagttgttcctgataatctattgatgcataagacgtctgcgttgaactttgaacagcgaatttgttggctgaaacagtgaatatggcagatacttagaatgcacaccaagtttgcatttattttgaattgatgtatatgatattttttccagtcaataggatctagagagcagagtgaagctaaagtgctttggcattggccactggcacgagcttcgtcagattgctgtgtaaactggacagaattaTC-ATTC-CT-GT-AAGCAATCAACACTGGC-TTGGAAATGGCTT-AT-TTCA-ATAGCCCT--ATATTT-GTATTATGATTACAT--ACCA--TAAA-TCTAAAT-T--GTAGCA-GTCT-----AAATA-TTTTTAAATGAT-------GTGTG-TTTCCATTAGGTAA----A-ACCCT----TAACATTTCATCA----TG--T-ATG----CCA-ATCTC---T--AGG-CAC-ACAA-AAACA-TTTG-TTT--TTT------C-AAA-ATAA----TTGCA--CT-ATTA--TTT--TT-CATATT----A-GCG---TATTT--A-AT-TT-TTTCCAGT----ATATA-TGTTGTTT-CTTGT--CATTAC---AAGAAATATGA--TAAAATAATTAAA----AG-TACT-ACAATGAA-T-CG-GT----------CCTAATTAC-TTA---AAAT-AT-AAGCTGAGCATCTGGGAT-AGA-AT---AAC-GATA-TTTCTTGTTTGGTAT--ACAAAAAACACA--G-CAA-TTTA-T-AAGTTCATAT--ATGGTACCGTATT-AAT--T---AGATTTAAA-TCCG--GTCGTAAGAGCA--ATAATTAAAGTAATATTGCTTTGTGTTG--TATTA-TTATGTTAG-AAAATTATA-TATAAA--TTGATACT--AATAATTTGTG-CAAACATT-ATAGGATTTATCTAGTCAAAA---AGC-GTTCACAGTT--ATCTCC--TTGATTAGACTTA------TGTAAGTCACCA-CTCTGCTTTGAAC--TGAA---TGATTT-----GCTGAAACAG-GAA----------ATA-CTT-ACGAATGTACACTCCCAAGTTTGCATCTTATTCTTGAA--TTGGAA-GTTT-ATGTCACCACGAGCAT-CTTTGTTTTCCCTTATTCAACTAGT-CATAT----CATAGAACGACCGATAGGTCTAGGGCTTGCTATCTTTGTGAGCACCTTTGGCCACATTTTGCAC-TGCTTCGTCTAG-TGTTTTTCTGTGGAAAC--GACAGA--TAA--CTTG---C--------TT-CATCCT--GTG-TTTTAAA-CATTCA--AA--TTACGTTTAATA-TTG-AA-CAGAT-AACTTCTACATTTATATGAA---AATC----AAAATGCCA-TATCTGATCATA-TCAC-Ttgctaataattgcaatata
gi|4 : TAAAGCTACC-TTAAT-TTCCCTAA-TTA-GACTTACT-TCCACTTCAAATAA--AT-TTGGGT-T--T--AAAAAATAATAT------GT-ATGTAAACAGATAAAC-TTC-CAAGTT--CATCTTATGTCCC-AC-TTTAT--GAACCTTA-TT-CAAAT-ATT--GAAAA-CAA--------TTAA------GGGGGCTACAACTCT---TCAAAATATCATAGGGGGT-GGATCTAAAAAACTTCTTTCGTC-TGATTTT-C-AT---A---AAAAATAACAT--------CTT------GA--------A----------A-GAAATAACAAGAAGCTTA-CGTATACTTAAAATATTGATGAGATGAATG-ATTC-ATCAACGTCTTG-TTTTA-TTTTTATTATT-TATC---TTTCATAGG--CGTAGGACTGGGTTT-----TGAA----A----AG----GGGGGGGGGGGGTCTATACTTCTACAT-TAATCTTTGACAA
gi|5 : A-TAA--ATATTG--T-T--T--AAAAA-TAATATAAATCCGTTATGTAAA-AAATAAAC-TTC-ATAC---GCAT-TTATGTGCTCAT-TT-ATTGGAAT-ACA-TTACACAC-TTTTAGACAA-CAAATTCTCCATTAAACACACGAGGGC-ACAAC-CTCGTTCAAAAT-TCAATGGGG-T-GGATC---AAAAAT-CTTTCTTC-T-ATTTTAC-AT---A---AAATACAAAA--------ACATTG---TGA--------A----------AAGAAATA-CAAGA--CTTA-T----AATTAAA-TATTGATGAGATGAATGAATTCTATCAACGT-TTG-TTT-ATTTTT----ATTATATTAATTTTCTTAGGCTCGTTGGACTGGATTTGAAAGCGAA---AGCCCTGGAAAAGCGGGGCGGGGGGCTA-ACTTTGAAATATA----tataaaaaaataaaaaaaccgcagaaaaaaccacaaaaaccatcaccacacacagaaggctaaccaaacccaaattggggtcgggggcaatattcttaataaatcactcctaaaaaagggggggggggcatattctattaatcactctcctaaaaagggacagggggggggggggggcaaacacctaatgtgtgtgtggggactttctaaatacatgtttgacaacttacaagcacccaataaaaaaaaagaagtctaaaacaacaaactgctgcaaactgatagcaaaaaaaaaaaaaatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttcacgcctctacccacccctcccatccccctggggccgagttcccgcgaagaattgaatccttcgggtcg
gi|6 : aataaaactcttacacatatatgcatTCTCT-GT-AAGCA-TCAA-ACTGGC-TTGGAAATGGCAT-AT-TTCAGATTGCCCT-TATATTTTGTTATATGATTGCAT--AAC--ATAAAGTCTAAAT-T--GTAGCATGTCTT----AAATA-TTTTAAAATGTT-------GTGTT-T--CCAT--GGTAA-CATG-ACACT----TAACATTTCA-CA----TGT-T-ATG----ACC--TCCC---TCTAGACCC--ATAA-AAACA-TTTA-TTT--TT-------CAAAC-ATAA----TTGCA--CT-ATTA--TTT--AT-CACATTA---A-G-G---TATTTT-ATAT-TT-TT----GT---TATACA-TGCTGTTTTCTTGT--CA---T---AA-AAATATGA--TGAAATAGTTAAA----AG-TACT-AGAATG-A-TTCA-GT----------CCTAATTAC-TTA---AAAT-AT-A-GCTT-GCATCTTG-AT-GAGAAT---AATCAATATTGTCTTGTTCGGTAT--ACAAAAA-CGCA--GGCAA-TT-ATT-AAGT-CATAC--ATG-ATCCG---T-AATA-T--TAGATTAAAA--CTA--TTC-TAA-AGCA-TAT-A--AAA--AAAATTG----GGGT--G-TATTATTTATGTAAG-AAAA--------TAAATTT-GATATT--AA--ATTT-TGTTAAAAAGTGATAG-----ATTTAGTCAAAA---GTC-GTTCACAGTT--ATCTCCC-TTGAATAAGTCTA------aattaattctcacatatacaaaaaaaagaacaaaaaaaacaccactgcaatcacacaaagaggctacccaaaaccacaaaatgtgagacaaaccggtaggaagggacaattactatagatactaaaggagagaggggggaggccggcactacaataaattgatgtgtggagagaacttactaagtaatgtgaaaacttaaaagcaaacaaataaaatgaaaagcacaagacatgctaatacacaatgactgcgaacccagtaagtaaaagcaccaaaaaaaaaaaatagcatccaccataacaacacagcagagataggttacggacaacccataacaactagaacaacaccccccgcccctacataccatcttgttagaggttcccctccccctggggcctctgagttccggaaaaagattgaacttccgggttcaag
gi|7 : TTTG-AA-CAGAA-CACTCT-ACATTTTTATGAA---AACTTTCAAATGTACGTACATTC-CTCA-A-TTAC-TGAAAGAGATGAATACAT-GGTTCTCAGTGATCATCCC---TATCTGATATTTATA--TAATTT-CAGAAAGTGAGTTTG-ATTTATTTTTAACAATTA---GTAAA---AGC-T-AATATTC--TAC-TTATAATTTACT-TCCACTTCAA-TAA--AA-TTG--T-T--TTAAAAGA-TAATAT----TTGT-ATTT-GA-AAATTAAC-TTC-TTATTTCACAT-CTATCTCCA-TC-TT-AT--GAAC-CTATTTACAAAT-ATT--GAAAA-CAA--------TTAA-------GGGAC-A-AACTCTT--CCAATTT-TCAT--GGG-T-GTATCT--AAGATT-CTTTCATC-TGATTTTCC-AT---AATTAAAAAAAAAATAATAATAAC-TTG-AATGATGAATTTTA----------A-AAAATAAC-AGAA-CTAA-A----AATTAAA-TATTGTTAGAATAAATG-ATT--------G--TTG-TTT-A-ATTT----G-T-TATCA---TTCATAGA--CCTAAGACTG--TTT-----TGAA---GG----GG----AGGGGGGAG------A-ACTTTTGAATGTA----TTGACAAt
gi|8 : ACGTCTT----AAATA-TTTTAAAATGTT-------GTGTA-T--CCAT--GGTAA-CATG-ACACC----TAACATTTCA-CA----TGTTT-ATG----GCC-ATC-C---TCTAGGCCAC-ACAA-AAACA-TTTG-TTT--TT-------C-AAC-ATAA----TTGCA--CT-ATCA--TTT--TT-CATATT----AGG-G---TTTTTT-A-AT-TT-TT----GT---TATACATTGTTG-TTTCTTGT--CA---C---AA-AAATATGATTTAAATTAATTTAA----AGTTACT-ACAATGAATTTCA-GTGTGAAACGTCCCTAAAAAC-TTATTGAAAT-AT-A-GCTT-GC-TCTTG-AT-GAG-ATATAAACCGATACTTTTCTGTTTAGCATTAACAAAAACCGCA--GGCAATTT-A-TAAAGTCCATAT--ATG-TACCAT--T-AATAAT--TAGATTAAAA-CCTGGTTTC-TAA-AGCATTATAA--AAA--AG----G----GGGTTGGCTATTA-TTATGTAAGAAAAA----A-T-AAAA--T-GATATT--AA--ATTTGTG-CAAAAATTG-TAC-----ATTTAGTCAAAA---GTC-GTTCACAGTT--ATCTC
gi|9 : TTGCAC--AGCA-C---A-TCTAAAT-TAAG-AGCTCGTCTT----------TTTTAAGATATTTCAATTGGTGTGCT--TCAT--GGTAA-AAGG-ACACTGTTTTAA---TGCA-TA----TG--T-TTT----GAC-TTTTG---TCCAGATGA--ACAA-TAACATTTTG-TTT--TTGTTCAAAC-AAT-AAGA----TTGAA--GT-ATTC--CTTGAAT-CACTCT----A-G-T---TTATTA-A-AT-TA-TT----GTTCCTATAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TAAAGCGAGTTTTAAAACCACCACACCTAGCATCAAACGAAATTTCATTGTATATTGTAATTGAGCCTAAACTTTTCTAGATGATGCTACCATACTAAATTAGTATCACGCTTAGTGTTTGAGA