lowQualScore : 111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111 1111111111111111111111111111111
lowQualScore : 8888888888888888 11111 111 111 111 1111 111 111 11 111 111111 1 11 1 22222222 11 222222 1111111 77777777777777777 111 111 222222 4 66666666666 333333333333333333333333333333333333333333333333333333 22 222222222 1 555555555555555555555 1 111111 44444 11 2222 1 222 22222222222222222222222222222222222 3333333333333333 111 3333333333333 2222222 3 1 1 88888888888888888 11 1 11 1111111111111111111111111111111 4
lowQualScore : 6 6 4 4444444444444444 99 5 888 5 99999 3 888 8 000 77 888 888 7777 5 99 2 77 0 000 5 555 88 99 99 6 77 5 888 999999 3 11 8 8 1 8 77777777 11 333333 8 1 9999999 99999999999999999 777 999 999999 0 7 33333333333 7 333333333333333333333333333333333333333333333333333333 11 111111111 3 6 111111111111111111111 6 999999 00000 99 6 88 3333 3 5 000 7 7 11111111111111111111111111111111111 3 99 777 1 6 9999999999999999 000 77 6666666666666 6 1111111 0 3 2 3 0 77777777777777777 88 3 88 4444444444444444444444444444444 6 6 0
lowQualScore : . . . ................ .. . ... . ..... . ... . ... .. ... ... .... . .. . .. . ... . ... .. .. .. . .. . ... ...... . .. . . . . ........ .. ...... . . ....... ................. ... ... ...... . . ........... . ...................................................... .. ......... . . ..................... . ...... ..... .. . .. .... . . ... . . ................................... . .. ... . . ................ ... .. ............. . ....... . . . . . ................. .. . .. ............................... . . .
lowQualScore : 0 7 0 8888888888888888 11 0 888 0 11111 4 888 8 000 99 000 333 0000 2 22 8 99 3 000 7 888 55 22 22 7 55 3 333 111111 3 00 0 0 8 0 22222222 00 000000 0 4 0000000 55555555555555555 888 888 222222 0 0 33333333333 3 444444444444444444444444444444444444444444444444444444 66 222222222 2 0 222222222222222222222 0 222222 00000 22 7 33 5555 3 7 000 9 9 33333333333333333333333333333333333 5 22 333 7 7 2222222222222222 000 99 7777777777777 7 7777777 2 2 0 3 7 77777777777777777 33 3 33 0000000000000000000000000000000 0 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGCACGGTGC-GGAATGGGGACGGACTNTCCGTGTTATTTT---TTTTT-GC-GCG-TTTCC---AGACTAAGCGTGCTC-AGCAACGGAC--TTTTCGGGGTTTAAA---AATCTGAC---CAGAG--ACACA--NTA---TGGAC-CCTANAGAA--AGAAAGAAGTCG--TAAGTC---TTTTT-CAAATCATTTTCA--CGGAATAT-CGTAA--TATCCCATG--AGATAGTATTT-ATAACTAAAT-TTACCAAATTTGGCCCACATTCTT---CAAAA-AA---CC-CACA--CAAA-CTTGAAA-AAAGATCGA-A------T-CCGT--CAAA------TGC-CGTCACGT----T--TTTCTAGAAA-TAG------CAC----ATCGA--NTATTCTTAT--TCACTG----G-CTGT-ATTTTCGTTGTTA-----------CAAAATGTAATCTATCG-------------CCCACTCGGNAATCG------------------A-C----ATGCCTTGGTTTTTTTTATTTGGA--AAATGTTGAATTTATCCGTGTAA------------ACCCTTGGCCAACGGACTT--TTTGTGTGC----CT--CTG-T--AAT--TGGTT-CAAATTTTT-GGC---ACCGGACTTATTG-GT----ATT-T-CTG--CA---GTGTT--T---ATATGT--ATTNTGTATTGCATTTAG-AAT-------C--------AAGAGA---AAG--AAAACATTGT-------------GGTTGAACAGGCC-AA-------AGAGAAG-AAAAAATGAC-AT-TACGATAGTATA----T------------TAGG--TAC-GAC--TATTCGGACTAATACCCAACTGACAATATTTATGTTTTAGCATATTGTACCTATTGAAGCCTTAATAATAGCGATAAATACATATA-TACAT
Reference ( gi|1 ) : ATTTTTTTCTTCTCATATCTATTAAATGGTATGCACGGTGT-GGAATGGGGACGGACTATCCGTGTTTTTTTTTTTTTTTTGC-ACG-TTTCC---AGACTAAGCGTGCTC-AGCAACGAAA--TTTTTGGGGTTTAAA---AATCGGAC---CAGAG--ACACA--TTA---TGGAC-CTTACAGAA--AAAAAGAAGTCG--TAAGTC---TTTTT-CAAATCATTTTCA--CGGAATAT-CGTAA--TATCCCATG--AGATAGTATTT-ATAACTAAAT-GTACCAAATTTGGCCTACATTCTT---CAAAA-AA---CC-TACA--CAAA-CTTGGAA-AATGATCGA-A------T-TTGT--CAAA------TGC-CGTCACGT----T--TTTCTAGAAA----------TAC----ATCGA--TTATTCTTAT--CCACTG----G-CTGTAATTTTTTTTGTTA-----------CAAAATGTAATCTATCG-------------CCTACTTGGAAATCG------------------A-T----ATGCCTTG-TTTTTTTT-TTTG-A--AAATGTTG-ATTTATC---GTAA------------ACCCTTGG-CAACGGACTT--TTTGTGTG-----CT--CTG-T--AAT--TCGTT-CAAATTTTT-GGC---ACCGGACTGATTGGGT---CATT-T-CTG--CACCGGTGTT--T---ATATGT--ATTATGTATTGCATTTAG-AAT-------C--------AAGAGA---AAG--AAAACATTGT-------------GGTTGAACAGGCC-AA-------AGAGAAGAAAAAAATGACCAT-TACGACAGTATA----T------------TAGG--TAC-GAC--TATTCGGACTAATACCCAACTGACAATATTTATGCTTTAACA---TATACTTATTGAAGCCTTGATAATAGCGATAAATACATGTATTACAT
gi|2 : TGTGCACG-TGCAGGAATGGGGACGGACTTCCCGTGTTATTTA---------ACGACGCTTTCCCCAAGACTAAG-GTCCTCCAACAACGAAC--TTTTTGTGGTTTAAAAACAATCTGACAGTCAGA---ACTCAGGCTAC--TAGACTCCTAGAGAAGCGAAAAAAAGTCG-----GTCGAGTTTTT-CAAATC--TTTCAATGGGAATACATATAACGTATCCTATGCTATATGGCATTTCAAAACTAAATCTTACCAAA-GTGGCCTACGTTCTTG--CAAAACAACATCC-TA-A--CAAATCTTGAAA-AAAGATCGACA------T-CCGT--CAAA------TGC-CGTCAAGTGTTCT--TTTCTAGAAACTAGAGCAGTCACGAGTATCGA--ATAATCTTATTATCATTGACAAG-CTAT--TTCGTTTTGTTATGCCACACTACCAAATTGTCATC-AGCGATGCTTAGTAAATTCCACTCAAAGATCA------------------AGTCTCAAT-CCCTG-GCTCGGTT-TTTG-ATGGAAT-TTG-ATTTATC---GCAC------------ACC--TGG--AACAGA-TTAATTTGTGTGT----CTCACTGAT--GATACTGATT-CAAATTTTTGGGC---AC--GATGGATTGGGT---AATC-T-CTG--CA-------T--T---CTGAGTCGACTATTGATCGT-TTTAG-AAT-------T--------AAGAGA---GAG---AAACTTTGT-------------GGTTGAACA-GCC-AA-------AGAGAAG-AAAACATGAC
gi|14 : ttattttttattttttcgtccCACGGTGT-GGAATGGGGACGGACTATTCCTG-------GGGTTTTTTGC-GCG-TTTTC---AGACTAAGCGTGCTC-AGCAACGGGC--TTTTCGGGGTTTAAA---AATCCGAC---CAGAG--ACACatatttattgataacgatagt
gi|17 : taaCATGGTGT-GGAATGGGGACGGACTATCCGT
gi|3 : ACGGTGC-GGAATGGGGACGGACTATCTGTG--------GGTTTTTTGC-GCG-TTTCC---AGACTAAGCGTGATC-AGCAACGGAC--TTTTCGGGGTTTAAA---AATTGGA
gi|9 : ACGGTGT-GGAATGGGGACGGACTATCCGTGCTTTTTTTTTTTTTTTGC-GCG-TTTCC---AGACTAAGCGTGCTC-AGCAATGGAC--TTTTCGGGGTTTAAA---AATCGGAC---CAGAG--ACACA--TTA---TGGAC-CCTACAGAA--ATAAATAAGTCG--TAAGTC---TTTTT-CAAATCATTTTCA--CGGAATAT-CGTAA--TATCCCATG--AGATAGTATTT-ATAACTAAAT-GTACCAAATTTGGCCAACATTCTT---ttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccacattcttcaaaaaaccctacacaaacttagaaaatgatcgaatttgtcaaatgccgtcacgtttttctagaaatacatcgattattcttattcactgactgtattttcgttgttaaaagatgtaatctatcgcttacttggtaatcgactcaaatatcatatcatacatgccttgtttttttttggaaaatgttgatttatcgtaaacgggttcgtacacccttggcaacggactatttgtgtgctctgtaattggttcaaattgttggcaccggacttattgtgtttataatatgtattctgtaaaacattgtggttgaacaggccaaagagaagaaaaatgattacgctagtatattatttaggtacgactaatcggactaatacccaactgacaatatttatgttttagcatattatacttattgaag
gi|11 : ACGGTGT-GGAATGGGGACGGACTTTCCGTGTTATTTT---------GT-GCT-TTTCC---AGACTAAGCGTGCTC-AGCAAAGGAC--TTTTCGGGGTTTAAG---AATCTGAC---CAGCG--ACACA--TTA---TGGAC-CCTACAGAA--AGAAAGAAGCCG--TAAGTC---TTTTT-CAAATCATTTTCA-----------CGTAA--TATCCCATG--AGATAGTATTT-ATAAATAGAT-TTACCAAATT
gi|8 : TGGGGACGGACTTTCCGTGTTATTTT---------AC-GCG-TTTCA---AAAGTAAGCGTGTTC-AGCAACGGAC--TTT----------------ATCTGAT---CAGAA--AAATA--ATA---TGGAC-TATAGAGAA--AGAAAGAAGTCG--TAAGTC---TTTTT-CAAATCATTTACA--CGGAATAT-CGTGA--TATCCCATG--AGATAGCATTC-ATAACTAAAT-TTACCAAATTTAGCTCACATTCTT---CAAAA-AAT--CC-TACA--CAAA-CTTGAAA-AAAAATCGA-A------T-CCGT--CAAA------TGC-CGTTATGT----T--TTTCTAG
gi|5 : TGGGGACGTACTTTCCGTGTTATTTT---------GC-GCG----AC---AGACTAAGCGTGCTC-AGCAACGGAC--TTTTCGTGGTGTAGA---ATTCTGAC---CGGAGTAATAAAA-TTAATTCGGG-------AGAA--AGGAAGAAGTCG--TTATTC---TTTTTTCAAAACATTTTCG--AGGAATAA-CGTAA--TATCCGATG--GGGTAGTATTT-ATAACTACAT-TTATCAAATATGGTCCACATTCGT---CAAAA-CA---TCACACA--CAAA-TCTGAAACAAAGATCGA-A------A-CCAT--CAAA------TGC-TGTCATGT----T--TTTCTAGAAA----------TAC----ATCGA--ATTTTCTTAT--TCACTG----A-CTGT-ATTTTTGTTGTAA-----------CAAAATGTAATGTATA-----------------ACTTTGCAATCG------------------A-
gi|13 : TTTTAAT-GCG-TTTCC---AGACTAAGTGTGGTC-AGCAACGTGACTTTTTTTGGTTTTAAA---AATCTGAC---CAGAG--ACACC--ATA---TGGA--CTTCTAGAA--AAAGAAAGGTCGTTTGAGTC---TTTTT-cttaaagatcaaatc
gi|12 : GAAGTCG--TAAGTC---TTTTT-CAAATCATTTTCA--CGGAATAT-CTGAA--TATCCCATG--AGATAGTATTT-ATTACTAAAT-TTACCAAATTTGGCCCACATTCTTAAACAAGA-GG---CC-CAtca
gi|3 : CCACATTCTT---CAAAA-AA---CCCTACA--CAAA-CTTAGAA-AATGATCGA-A------T-TTGT--CAAA------TGC-CGTCACGT----T--TTTCTAGAAA----------TAC----ATCGA--TTATTCTTAT--TCACTG----A-CTGT-ATTTTCGTTGTTA-----------AAAGATGTAATCTATCG-------------CTTACTTGGTAATCGACTCAAATATCATATCATA-C----ATGCCTTG--TTTTTTT-TTGG-A--AAATGTTG-ATTTATC---GTAAACGGGTTCGTACACCCTTGG-CAACGGACTA--TTTGTGTG-----CT--CTG-T--AAT--TGGTT-CAAATTGTT-GGC---ACCGGACTTATT------------------------GTGTT--T---ATA-----A-TATGTATTCTGT--------------------------------------AAAACATTGT-------------GGTTGAACAGGCC-AA-------AGAGAAG--AAAAATG---AT-TACGCTAGTATATTATT------------TAGG--TAC-GAC--TAATCGGACTAATACCCAACTGACAATATTTATGTTTTAGCATATTATACTTATTGAAGtgggccaca
gi|4 : acggtgcggaatggggacggactatctgtgggttttttgcgcgtttccagactaagcgtgatcagcaacggacttttcggggtttaaaaattggattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn---CC-CACAATTAAC-CTTGGAA-AAAGATGGA-AGTCCATTGTTGTACCAAAGCTCTCTGTTCACCGCTT----TCCTTTTTAGAAAATAACC----CAA----ATCGAATTTATTCTTAT--TCACTG----GACTGT-ATTT
gi|10 : ------------------A-C----ATGCCTTG-TATTTTTT-G--G-A--AAATATTG-ATTTATC---GTAA------------ACCCTTGG-CAACGGACTT--TTTGTGTG-----CT--CTG-T--AAT--TGGTT-CAAATTTTT-GGC---ACCGGACTTATT------------------------GTGTT--TATAATATGT--ATTTTGTATTGCATTTAG-AAT-------C--------AAGAGA---AAG--AAAAaggcccgttagttgcaaatcacttaaccaagatattggtcacgcaagtcttctatctgactgtacttctagtaaggtctacttcaacgggcaagactcatggagccatgggaacatgccgttgtcttggttttttttatttggaaaatgttgaatttatccgtgttaaccttggccaacggcatttggtgtgcctccccctgtaaaattgttccaaaattttggcggaacccttattgtgtttacattgt
gi|6 : aaaagtgatctatatatatatcgcttatagtaatcgactcaaagatcatatcatacatgtTGTCTTGGTTTTTTTTATTTGGA--AAATGTTGAATTTATCCGTGTTA------------A-CCTTGGCCAACGG-CAT--TTGGTGTGCCTCCCC--CTG-TAAAAT--T-GTTCCAAAATTTT-GGCGGAACC---CTTATTGTGTTTACATTGTGCCGAACACGGGTGCT--T---
gi|4 : TGTCTTGGTTTTTTTTATTTGGA--AAATGTTGAATTTATCCGTGTTA------------A-CCTTGGCCAACGG-CAT--TTGGTGTGCCTCCCC--CTG-TAAAAT--T-GTTCCAAAATTTT-GGCGGAACC---CTTATTGTGTTTACATT-tcggaaacgcacgacctgcccatcacagggcgagaaagctaatatgtattttgtattgcatttagaaatccaaaccgaaagagactgaagaaaaaacattgtggccaccagcgccggttgaacaggccaataaaatcaaagaagaaaaag
gi|7 : cccacaattaaccttggaaaaagatggaagtccattgttgtaccaaagctctctgttcaccgctttcctttttagaaaataacccaaatcgaatttattcttattcactggactgtatttaggcccgttagttgcaaatcacttaaccaagatattggtcacgcaagtcttctatctgactgtacttctagtaaggtctacttcaacgggcaagactcatggagccatgggaacatgccgtTGTGTG-----CT--CTG-T--AAT--TGGTT-CAAATCTTT-GAT---GCTGGGCTGATTGGGT---AATT-C-CTG--CACTGGACTTATT---GTGTGT--AC-ATGTATTGCATTTAG-AAT-------C--------AAGAGA---AAG--AAAACATTGT-------------GGTTGAAAAGGCC-AA-------GGAGAAG-AAACAATGACAAT-TACGATAGTACA----TGTATATTACATGTAGGTATAC-GAT--TATTCGGACTAATA-------------------------ATA---TGTACCTATTGAAGCCTTAATAATAGCGATAAATACATATA-TACATgt
gi|15 : agattcatttactgtacT-GGC---ACCGGACTTATTG--------TT-T-TTA--TA--------------ATATGT--ATTTTGTATTGCATTTAG-AATTTAAAATC--------AAAAGA---AAG--AACACATTGT-------------GGTTGAACAGGCC-AA-------AGAGAA
gi|6 : ---ATATGT--ATTTTGTATTGCATTTAGAAAT-------CCAAACCGAAAGAGACTGAAGAAAAAACATTGTGGCCACCAGCGCCGGTTGAACAGGCC-AATAAAATCAAAGAAGAAAAA
gi|16 : tgtcttggttttttttatttggaaaatgttgaatttatccgtgttaaccttggccaacggcatttggtgtgcctccccctgtaaaattgttccaaaattttggcggaacccttattgtgtttacattgtgccgaacacgggtgctttcggaaacgcacgacctgcccatcacagggcgagaaagcta--------AGGAGA---AAG--AAAACATTGT-------------GGTGAAACAGGCCAAA-------AGAGAAG-AAAAAATGACTATATACGACAGTATA----T------------TAGG--CACGGACAGTATTCGg
Alignments
lowQualScore : 1111 444444444 1 111 111 22222222 111111 1111111 66666666666666666666 11 11 222222 11 1111 2222222 1 5555555555555555 66666666666666666666666 111 1 555555555555 11 3333333 11 111 7777777777777777777777777777 3333333333333333 3333333333333 1111111 1111 66666666666666666 11 1 11 222222222222222222 2
lowQualScore : 77 1 0000 5 222222222 4 4 777 4 4 1 4 777 888 888 5 1 1 77 66 888 5 222 66 77 77 5 5 555 6 5 77 666 99 6 6 6 6 44444444 999999 6 4444444 88888888888888888888 1 11 11 111111 8 11 7777 8 6666666 0 3 2 9999999999999999 22 1 77777777777777777777777 6 111 1 9 333333333333 6 77 999999 4444444 5 55 77 5 4 777 9999999999999999999999999999 5 77 5 1 1 5 2222222222222222 888 66 1111111111111 5 8888888 6 9999 8 33333333333333333 33 0 33 7 777777777777777777 0 0
lowQualScore : .. . .... . ......... . . ... . . . . ... ... ... . . . .. .. ... . ... .. .. .. . . ... . . .. ... .. . . . . ........ ...... . ....... .................... . .. .. ...... . .. .... . ....... . . . ................ .. . ....................... . ... . . ............ . .. ...... ....... . .. .. . . ... ............................ . .. . . . . ................ ... .. ............. . ....... . .... . ................. .. . .. . .................. . .
lowQualScore : 11 0 6666 5 666666666 4 4 888 4 4 1 4 888 888 999 7 4 0 99 99 888 0 111 00 99 99 7 7 777 7 7 99 000 22 7 7 7 7 22222222 222222 7 3333333 44444444444444444444 0 00 00 444444 0 00 0000 0 0000000 0 2 5 8888888888888888 22 0 00000000000000000000000 7 777 3 8 888888888888 7 55 888888 0000000 7 77 99 0 5 555 7777777777777777777777777777 7 99 7 0 4 7 6666666666666666 888 99 4444444444444 7 6666666 7 8888 0 55555555555555555 88 0 88 3 777777777777777777 7 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGCACGGTGC-GGAATGGGGACGGACTNTCCGTG----TTATTTT----TTTTTGCG-CG-TTTCC---AGACTAAGCGTGCTC-AGCAACG-GACTTTTCGGGGTTT-AAAAA---TCTGAC---CAGAGACACAN--TA-TGGAC-CCTAGAGAAA--GAAAGAAGTCG--TAAGTC---TTTTT-CAAATCATTTTCAC--GGAATAT-CGTAA--TATCCCATG--AGATAGTATTT-ATAACTAAAT-TTACCAAATTTGGCCCACATTCTT---CAAAA-AA-C--C-C-ACA--CAAA-CTTGGAA-AAAGATCGA-A-TCCGT--------CAAA------TGC-CGTCACGT----T--TTTCTAGAAA-TA-------CAC----A--TCGAAT--ATTCTTAT--TCACTG----G-CTGT-AT--TT----TCGTT-GT-------TACAAAA-TGTAATCTATCG-------------CCTACTCGGNAATCG------------------A----CATGCCTTGGTT---TTTTTTATTTGGAAAATGTTGAATTTATC-----CG----CGTAAACCCTTGGCCAACGGACTT--TTTGTGTGCCTC---CTG-T--AAT--TGGTTCAAATTTTT-GGCACCGGA---CTTATT-GG--T-G-TTTCTGCA---------TTAT-ATGT--AT-TNTGTATTGCATTTAG-AAT-------C--------AAGAGA---AAG--AAAACATTGT-------------GGTTGAACAGGCC-AA-------AGAGAAG-AAAAAATGA-C-AT-TACGACAGTATA----T------------TAGG--TAC-GAC--TATTCGGACTAATACCCAACTGACAATATTTATGCTTTAGCATA--GTACTTATTGAAGCCTTGATAATAGCGATAAATACATGTATTACAT
Reference ( family-6401 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGCACGGTGC-GGAATGGGGACGGACTNTCCGTG----TTATTTT----TTTTTGCG-CG-TTTCC---AGACTAAGCGTGCTC-AGCAACG-GACTTTTCGGGGTTT-AAAAA---TCTGAC---CAGAGACACAN--TA-TGGAC-CCTANAGAAA--GAAAGAAGTCG--TAAGTC---TTTTT-CAAATCATTTTCAC--GGAATAT-CGTAA--TATCCCATG--AGATAGTATTT-ATAACTAAAT-TTACCAAATTTGGCCCACATTCTT---CAAAA-AA-C--C-C-ACA--CAAA-CTTGAAA-AAAGATCGA-A-TCCGT--------CAAA------TGC-CGTCACGT----T--TTTCTAGAAA-TAG------CAC----A--TCGANT--ATTCTTAT--TCACTG----G-CTGT-AT--TT----TCGTT-GT-------TACAAAA-TGTAATCTATCG-------------CCCACTCGGNAATCG------------------A----CATGCCTTGGTT---TTTTTTATTTGGAAAATGTTGAATTTATC-----CG----TGTAAACCCTTGGCCAACGGACTT--TTTGTGTGCCT----CTG-T--AAT--TGGTTCAAATTTTT-GGCACCGGA---CTTATT-GG--T-A-TTTCTGCA---GTG--TTTAT-ATGT--AT-TNTGTATTGCATTTAG-AAT-------C--------AAGAGA---AAG--AAAACATTGT-------------GGTTGAACAGGCC-AA-------AGAGAAG-AAAAAATGA-C-AT-TACGATAGTATA----T------------TAGG--TAC-GAC--TATTCGGACTAATACCCAACTGACAATATTTATGTTTTAGCATATTGTACCTATTGAAGCCTTAATAATAGCGATAAATACATATA-TACAT
gi|1 : TATGCACGGTGT-GGAATGGGGACGGACTATCCGTG----TTTTTTTTTTTTTTTTGCA-CG-TTTCC---AGACTAAGCGTGCTC-AGCAACG-AAATTTTTGGGGTTT-AAAAA---TCGGAC---CAGAGACACAT--TA-TGGAC-CTTACAGAAA--AAAAGAAGTCG--TAAGTC---TTTTT-CAAATCATTTTCAC--GGAATAT-CGTAA--TATCCCATG--AGATAGTATTT-ATAACTAAAT-GTACCAAATTTGGCCTACATTCTT---CAAAA-AA-C--C-T-ACA--CAAA-CTTGGAA-AATGATCGA-A-TTTGT--------CAAA------TGC-CGTCACGT----T--TTTCTAGAAA-T---------AC----A--TCGATT--ATTCTTAT--CCACTG----G-CTGTAAT--TT----TTTTT-GT-------TACAAAA-TGTAATCTATCG-------------CCTACTTGGAAATCG------------------A----TATGCCTT-GTT---TTTTTT-TTT-GAAAATGTTG-ATTTATC------------GTAAACCCTTGG-CAACGGACTT--TTTGTGTG-CT----CTG-T--AAT--TCGTTCAAATTTTT-GGCACCGGA---CTGATT-GGGTC-A-TTTCTGCACCGGTG--TTTAT-ATGT--AT-TATGTATTGCATTTAG-AAT-------C--------AAGAGA---AAG--AAAACATTGT-------------GGTTGAACAGGCC-AA-------AGAGAAGAAAAAAATGACC-AT-TACGACAGTATA----T------------TAGG--TAC-GAC--TATTCGGACTAATACCCAACTGACAATATTTATGCTTTAACATA---TACTTATTGAAGCCTTGATAATAGCGATAAATACATGTATTACAT
gi|10 : atttttttcttctcatatctattaaatgg------------------A----CATGCCTTG-------TATTT-TTTGGAAAATATTGA-TTTATC------------GTAAACCCTTGGC-AACGGACTT--TTTGTGTGC-T----CTG-T--AAT--TGGTTCAAATTTTT-GGCACCGGA---CTTATT--G--T-G-TTTATA-------------AT-ATGT--AT-TTTGTATTGCATTTAG-AAT-------C--------AAGAGA---AAG--AAAA
gi|11 : aaaagtgatctatatatatatcgcttatagtaatcgactcaaagatcatatcatacatgtACGGTGT-GGAATGGGGACGGACTTTCCGTG----TTATTTT---------GTG-CT-TTTCC---AGACTAAGCGTGCTC-AGCAAAG-GACTTTTCGGGGTTT-AAGAA---TCTGAC---CAGCGACACAT--TA-TGGAC-CCTACAGAAA--GAAAGAAGCCG--TAAGTC---TTTTT-CAAATCATTTTCA-----------CGTAA--TATCCCATG--AGATAGTATTT-ATAAATAGAT-TTACCAAATT
gi|12 : GAAGTCG--TAAGTC---TTTTT-CAAATCATTTTCAC--GGAATAT-CTGAA--TATCCCATG--AGATAGTATTT-ATTACTAAAT-TTACCAAATTTGGCCCACATTCTTAAACAAGA-GG-C--C-C-A
gi|13 : ----TTTTAATG-CG-TTTCC---AGACTAAGTGTGGTC-AGCAACGTGACTTTTTTTGGTTTTAAAAA---TCTGAC---CAGAGACACCA--TA-TGGACTTCTAGAAAAA--GAAAG--GTCGTTTGAGTC---TTTTT-tgggccaca
gi|14 : CACGGTGT-GGAATGGGGACGGACTATTCCTG----GGGTTTT-------TTGCG-CG-TTTTC---AGACTAAGCGTGCTC-AGCAACG-GGCTTTTCGGGGTTT-AAAAA---TCCGAC---CAGAGACACtca
gi|15 : taaT-GGCACCGGA---CTTATT-G-------TTTTTATA-----------AT-ATGT--AT-TTTGTATTGCATTTAG-AATTTAAAATC--------AAAAGA---AAG--AACACATTGT-------------GGTTGAACAGGCC-AA-------AGAGAA
gi|16 : --------AGGAGA---AAG--AAAACATTGT-------------GGTGAAACAGGCCAAA-------AGAGAAG-AAAAAATGA-CTATATACGACAGTATA----T------------TAGG--CACGGACAGTATTCG
gi|17 : caCATGGTGT-GGAATGGGGACGGACTATCCGT
gi|2 : TGTGCACG-TGCAGGAATGGGGACGGACTTCCCGTG----TTATTTA---------ACGACGCTTTCCCCAAGACTAAG-GTCCTCCAACAACG-AACTTTTTGTGGTTT-AAAAACAATCTGACAGTCAGA-ACTCAGGCTACTAGACTCCTAGAGAAGCGAAAAAAAGTCG-----GTCGAGTTTTT-CAAATC--TTTCAATGGGAATACATATAACGTATCCTATGCTATATGGCATTTCAAAACTAAATCTTACCAAAGT-GGCCTACGTTCTTG--CAAAACAA-CATC-C-TAA--CAAATCTTGAAA-AAAGATCGACA-TCCGT--------CAAA------TGC-CGTCAAGTGTTCT--TTTCTAGAAACTAGAGCAGTCACGAGTA--TCGAAT--AATCTTATTATCATTGACAAG-CTAT-TTCGTT----TTGTT-ATGCCACACTACCAAATTGTCATC-AGCGATGCTTAGTAAATTCCACTCAAAGATCA------------------AGTCTCAATCCCTGGCTCGGTTTTTGA--TGGAA----TTTGATTTATC------------GCACACC--TGG--AACAGA-TTAATTTGTGTGTCTCA--CTGAT--GATACTGATTCAAATTTTTGGGCAC--GA---TGGATTGGG--TAA-TCTCTGCA---------TTCT-GAGTCGAC-TATTGATCGT-TTTAG-AAT-------T--------AAGAGA---GAG---AAACTTTGT-------------GGTTGAACA-GCC-AA-------AGAGAAG-AAAACATGA-C-AT-
gi|3 : ttattttttattttttcgtccACGGTGC-GGAATGGGGACGGACTATCTGTG----GG----T----TTTTTGCG-CG-TTTCC---AGACTAAGCGTGATC-AGCAACG-GACTTTTCGGGGTTT-AAAAA---Tatttattgataacgatagt
gi|3 : CCACATTCTT---CAAAA-AA-C--C-CTACA--CAAA-CTTAGAA-AATGATCGA-A-TTTGT--------CAAA------TGC-CGTCACGT----T--TTTCTAGAAA-TA---------C----A--TCGATT--ATTCTTAT--TCACTG----A-CTGT-AT--TT----TCGTT-GT-------TAAAAGA-TGTAATCTATCG-------------CTTACTTGGTAATCGACTCAAATATCATATCATA----CATGCCTT-GTT---TTTT---TTTGGAAAATGTTG-ATTTATCGTAAACGGGTTCGTACACCCTTGG-CAACGGACTA--TTTGTGTG-CT----CTG-T--AAT--TGGTTCAAATTGTT-GGCACCGGA---CTTATT--G--T-G-TTTATA-------------AT-ATGT--AT-TCTGT---------------------------------------------AAAACATTGT-------------GGTTGAACAGGCC-AA-------AGAGAAG--AAAAATG----AT-TACGCTAGTATATTATT------------TAGG--TAC-GAC--TAATCGGACTAATACCCAACTGACAATATTTATGTTTTAGCATATTATACTTATTGAAGtggattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccacattcttcaaaaaaccctacacaaacttagaaaatgatcgaatttgtcaaatgccgtcacgtttttctagaaatacatcgattattcttattcactgactgtattttcgttgttaaaagatgtaatctatcgcttacttggtaatcgactcaaatatcatatcatacatgccttgtttttttttggaaaatgttgatttatcgtaaacgggttcgtacacccttggcaacggactatttgtgtgctctgtaattggttcaaattgttggcaccggacttattgtgtttataatatgtattctgtaaaacattgtggttgaacaggccaaagagaagaaaaatgattacgctagtatattatttaggtacgactaatcggactaatacccaactgacaatatttatgttttagcatattatacttattgaag
gi|4 : acggtgcggaatggggacggactatctgtgggttttttgcgcgtttccagactaagcgtgatcagcaacggacttttcggggtttaaaaattggattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-C--C-C-ACAATTAAC-CTTGGAA-AAAGATGGA-AGTCCATTGTTGTACCAAAGCTCTCTGTTCACCGCTT----TCCTTTTTAGAAAATAA------CCC----AAATCGAATTTATTCTTAT--TCACTG----GACTGT-AT--TTAGGCCCGTTAGT-------TGCAAA
gi|4 : TGTCTTGGTT---TTTTTTATTTGGAAAATGTTGAATTTATC-----CG----TGTTAA-CCTTGGCCAACGG-CAT--TTGGTGTGCCTCCCCCTG-TAAAAT--TGTTCCAAAATTTT-GG---CGGAACCCTTATT--G--T-G-TTTtcacttaaccaagatattggtcacgcaagtcttctatctgactgtacttctagtaaggtctacttcaacgggcaagactcatggagccatgggaacatgccgttgtcttggttttttttatttggaaaatgttgaatttatccgtgttaaccttggccaacggcatttggtgtgcctccccctgtaaaattgttccaaaattttggcggaacccttattgtgtttacattgt
gi|5 : cccacaattaaccttggaaaaagatggaagtccattgttgtaccaaagctctctgttcaccgctttcctttttagaaaataacccaaatcgaatttattcttattcactggactgtatttaggcccgttagttgcaaatcacttaaccaagatattggtcacgcaagtcttctatctgactgtacttctagtaaggtctacttcaacgggcaagactcatggagccatgggaacatgccgtTGGGGACGTACTTTCCGTG----TTATTTT---------GCG-CG----AC---AGACTAAGCGTGCTC-AGCAACG-GACTTTTCGTGGTGT-AGAAT---TCTGAC---CGGAGTAATAA--AA-TTAAT-TCGGGAGAAA--GGAAGAAGTCG--TTATTC---TTTTTTCAAAACATTTTCGA--GGAATAA-CGTAA--TATCCGATG--GGGTAGTATTT-ATAACTACAT-TTATCAAATATGGTCCACATTCGT---CAAAA-CA-T--CAC-ACA--CAAA-TCTGAAACAAAGATCGA-A-ACCAT--------CAAA------TGC-TGTCATGT----T--TTTCTAGAAA-T---------AC----A--TCGAAT--TTTCTTAT--TCACTG----A-CTGT-AT--TT----TTGTT-GT-------AACAAAA-TGTAATGTAT-----------------AACTTTGCAATCG------------------A----Cacattgt
gi|6 : TGTCTTGGTT---TTTTTTATTTGGAAAATGTTGAATTTATC-----CG----TGTTAA-CCTTGGCCAACGG-CAT--TTGGTGTGCCTCCCCCTG-TAAAAT--TGTTCCAAAATTTT-GG---CGGAACCCTTATT--G--T-G-TTTttaaagatcaaatc
gi|6 : AT-ATGT--AT-TTTGTATTGCATTTAGAAAT-------CCAAACCGAAAGAGACTGAAGAAAAAACATTGTGGCCACCAGCGCCGGTTGAACAGGCC-AATAAAATCAAAGAAG-AAAAAacattgtgccgaacacgggtgctttcggaaacgcacgacctgcccatcacagggcgagaaagctaatatgtattttgtattgcatttagaaatccaaaccgaaagagactgaagaaaaaacattgtggccaccagcgccggttgaacaggccaataaaatcaaagaagaaaaag
gi|7 : tgtcttggttttttttatttggaaaatgttgaatttatccgtgttaaccttggccaacggcatttggtgtgcctccccctgtaaaattgttccaaaattttggcggaacccttattgtgtttacattgtgccgaacacgggtgctttcggaaacgcacgacctgcccatcacagggcgagaaagctaTGTGTGC-T----CTG-T--AAT--TGGTTCAAATCTTT-GATGCTGGG---CTGATT-GGG-T-AATTCCTGCA---CTGGACTTATTGTGT--GTACATGTATTGCATTTAG-AAT-------C--------AAGAGA---AAG--AAAACATTGT-------------GGTTGAAAAGGCC-AA-------GGAGAAG-AAACAATGA-CAAT-TACGATAGTACA----TGTATATTACATGTAGGTATAC-GAT--TATTCGGACTAAT-----------AATAT-----------------GTACCTATTGAAGCCTTAATAATAGCGATAAATACATATA-TACATg
gi|8 : agattcatttactgtacTGGGGACGGACTTTCCGTG----TTATTTT---------ACG-CG-TTTCA---AAAGTAAGCGTGTTC-AGCAACG-GACTTT--------------A---TCTGAT---CAGAAAAATAA--TA-TGGAC-TATAGAGAAA--GAAAGAAGTCG--TAAGTC---TTTTT-CAAATCATTTACAC--GGAATAT-CGTGA--TATCCCATG--AGATAGCATTC-ATAACTAAAT-TTACCAAATTTAGCTCACATTCTT---CAAAA-AATC--C-T-ACA--CAAA-CTTGAAA-AAAAATCGA-A-TCCGT--------CAAA------TGC-CGTTATGT----T--TTTCTAG
gi|9 : ACGGTGT-GGAATGGGGACGGACTATCCGTGCTTTTTTTTTT----TTTTTGCG-CG-TTTCC---AGACTAAGCGTGCTC-AGCAATG-GACTTTTCGGGGTTT-AAAAA---TCGGAC---CAGAGACACAT--TA-TGGAC-CCTACAGAAA--TAAATAAGTCG--TAAGTC---TTTTT-CAAATCATTTTCAC--GGAATAT-CGTAA--TATCCCATG--AGATAGTATTT-ATAACTAAAT-GTACCAAATTTGGCCAACATTCTT---
Alignments
lowQualScore : 1111 444444444 1 111 111 22222222 111111 1111111 77777777777777777 11 11 222222 11 1111 2222222 1 55555555555555555 66666666666666666666666 111 1 333333333333 11 4444444 11 111 66666666666666666666666666 3333333333333333 3333333333333 1111111 1111 66666666666666666 11 1 11 333333333333333333 1
lowQualScore : 77 1 0000 5 222222222 4 4 777 4 4 1 4 777 888 888 5 1 0 77 66 888 5 222 66 77 77 5 5 555 6 5 77 666 99 6 6 6 6 44444444 999999 6 4444444 00000000000000000 1 11 11 111111 8 11 7777 8 6666666 0 3 88888888888888888 22 1 77777777777777777777777 6 111 1 9 888888888888 3 6 77 999999 8888888 5 55 77 5 4 777 33333333333333333333333333 0 77 1 1 5 2222222222222222 888 66 1111111111111 5 8888888 6 9999 8 33333333333333333 33 0 33 7 111111111111111111 5
lowQualScore : .. . .... . ......... . . ... . . . . ... ... ... . . . .. .. ... . ... .. .. .. . . ... . . .. ... .. . . . . ........ ...... . ....... ................. . .. .. ...... . .. .... . ....... . . ................. .. . ....................... . ... . . ............ . . .. ...... ....... . .. .. . . ... .......................... . .. . . . ................ ... .. ............. . ....... . .... . ................. .. . .. . .................. .
lowQualScore : 11 0 6666 5 666666666 4 4 888 4 4 1 4 888 888 999 7 4 7 99 99 888 0 111 00 99 99 7 7 777 7 7 99 000 22 7 7 7 7 22222222 222222 7 3333333 66666666666666666 4 00 00 444444 0 00 0000 0 0000000 0 2 88888888888888888 22 0 00000000000000000000000 7 777 3 8 333333333333 7 7 55 888888 1111111 7 77 99 0 5 555 00000000000000000000000000 8 99 0 4 7 6666666666666666 888 99 4444444444444 7 6666666 7 8888 0 55555555555555555 88 0 88 3 777777777777777777 5
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGCACGGTGC-GGAATGGGGACGGACTNTCCGTG----TTATTTT----TTTTTGCG-CG-TTTCC---AGACTAAGCGTGCTC-AGCAACG-GACTTTTCGGGGTTT-AAAAA---TCTGAC---CAGAGACACAN--TA-TGGAC-CCTAGAGAAA--GAAAGAAGTCG--TAAGTC---TTTTT-CAAATCATTTTCAC--GGAATAT-CGTAA--TATCCCATG--AGATAGTATTT-ATAACTAAAT-TTACCAAATTTGGCCCACATTCTT---CAAAA-AA-C--C-C-ACA--CAAA-CTTGGAA-AAAGATCGA-A-TCCGT--------CAAA------TGC-CGTCACGT----T--TTTCTAGAAA-TA-------CAC----ATCGAAT--ATTCTTAT--TCACTG----G-CTGT-AT--TT----TCGTT-GT-------TACAAAA-TGTAATCTATCG-------------CCTACTCGGNAATCG------------------A----CATGCCTTGGTT---TTTTTTATTTGGAAAATGTTGAATTTATC-----CG----CGTAAACCCTTGGCCAACGGACTT--TTTGTGTGCCT---C-CTG-T--AAT--TGGTTCAAATTTTT-GGCACCGGA---CTTATT-GG--T-G-TTTCTGCA---------TTATATGT--ATTNTGTATTGCATTTAG-AAT-------C--------AAGAGA---AAG--AAAACATTGT-------------GGTTGAACAGGCC-AA-------AGAGAAG-AAAAAATGA-C-AT-TACGACAGTATA----T------------TAGG--TAC-GAC--TATTCGGACTAATACCCAACTGACAATATTTATGCTTTAGCATA--GTACTTATTGAAGCCTTGATAATAGCGATAAATACATGTATTACAT
Reference ( family-6401 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGCACGGTGC-GGAATGGGGACGGACTNTCCGTG----TTATTTT----TTTTTGCG-CG-TTTCC---AGACTAAGCGTGCTC-AGCAACG-GACTTTTCGGGGTTT-AAAAA---TCTGAC---CAGAGACACAN--TA-TGGAC-CCTAGAGAAA--GAAAGAAGTCG--TAAGTC---TTTTT-CAAATCATTTTCAC--GGAATAT-CGTAA--TATCCCATG--AGATAGTATTT-ATAACTAAAT-TTACCAAATTTGGCCCACATTCTT---CAAAA-AA-C--C-C-ACA--CAAA-CTTGGAA-AAAGATCGA-A-TCCGT--------CAAA------TGC-CGTCACGT----T--TTTCTAGAAA-TA-------CAC----ATCGAAT--ATTCTTAT--TCACTG----G-CTGT-AT--TT----TCGTT-GT-------TACAAAA-TGTAATCTATCG-------------CCTACTCGGNAATCG------------------A----CATGCCTTGGTT---TTTTTTATTTGGAAAATGTTGAATTTATC-----CG----CGTAAACCCTTGGCCAACGGACTT--TTTGTGTGCCT---C-CTG-T--AAT--TGGTTCAAATTTTT-GGCACCGGA---CTTATT-GG--T-G-TTTCTGCA---------TTATATGT--ATTNTGTATTGCATTTAG-AAT-------C--------AAGAGA---AAG--AAAACATTGT-------------GGTTGAACAGGCC-AA-------AGAGAAG-AAAAAATGA-C-AT-TACGACAGTATA----T------------TAGG--TAC-GAC--TATTCGGACTAATACCCAACTGACAATATTTATGCTTTAGCATA--GTACTTATTGAAGCCTTGATAATAGCGATAAATACATGTATTACAT
gi|1 : TATGCACGGTGT-GGAATGGGGACGGACTATCCGTG----TTTTTTTTTTTTTTTTGCA-CG-TTTCC---AGACTAAGCGTGCTC-AGCAACG-AAATTTTTGGGGTTT-AAAAA---TCGGAC---CAGAGACACAT--TA-TGGAC-CTTACAGAAA--AAAAGAAGTCG--TAAGTC---TTTTT-CAAATCATTTTCAC--GGAATAT-CGTAA--TATCCCATG--AGATAGTATTT-ATAACTAAAT-GTACCAAATTTGGCCTACATTCTT---CAAAA-AA-C--C-T-ACA--CAAA-CTTGGAA-AATGATCGA-A-TTTGT--------CAAA------TGC-CGTCACGT----T--TTTCTAGAAA-T---------AC----ATCGATT--ATTCTTAT--CCACTG----G-CTGTAAT--TT----TTTTT-GT-------TACAAAA-TGTAATCTATCG-------------CCTACTTGGAAATCG------------------A----TATGCCTT-GTT---TTTTTT-TTT-GAAAATGTTG-ATTTAT------------CGTAAACCCTTGG-CAACGGACTT--TTTGTGTGC-----T-CTG-T--AAT--TCGTTCAAATTTTT-GGCACCGGA---CTGATT-GGGTC-A-TTTCTGCACCGGTGT--TTATATGT--ATTATGTATTGCATTTAG-AAT-------C--------AAGAGA---AAG--AAAACATTGT-------------GGTTGAACAGGCC-AA-------AGAGAAGAAAAAAATGACC-AT-TACGACAGTATA----T------------TAGG--TAC-GAC--TATTCGGACTAATACCCAACTGACAATATTTATGCTTTAACATA---TACTTATTGAAGCCTTGATAATAGCGATAAATACATGTATTACAT
gi|10 : atttttttcttctcatatctattaaatgg------------------A----CATGCCTTG-------TATTT-TTTGGAAAATATTGA-TTTATC------------GTAAACCCTTGGC-AACGGACTT--TTTGTGTGCT------CTG-T--AAT--TGGTTCAAATTTTT-GGCACCGGA---CTTATT--G--T-G-TTT----A---------TAATATGT--ATTTTGTATTGCATTTAG-AAT-------C--------AAGAGA---AAG--AAAA
gi|11 : aaaagtgatctatatatatatcgcttatagtaatcgactcaaagatcatatcatacatgtACGGTGT-GGAATGGGGACGGACTTTCCGTG----TTATTTT---------GTG-CT-TTTCC---AGACTAAGCGTGCTC-AGCAAAG-GACTTTTCGGGGTTT-AAGAA---TCTGAC---CAGCGACACAT--TA-TGGAC-CCTACAGAAA--GAAAGAAGCCG--TAAGTC---TTTTT-CAAATCATTTTCA-----------CGTAA--TATCCCATG--AGATAGTATTT-ATAAATAGAT-TTACCAAATT
gi|12 : GAAGTCG--TAAGTC---TTTTT-CAAATCATTTTCAC--GGAATAT-CTGAA--TATCCCATG--AGATAGTATTT-ATTACTAAAT-TTACCAAATTTGGCCCACATTCTTAAACAAGA-GG-C--C-C-A
gi|13 : ----TTTTAATG-CG-TTTCC---AGACTAAGTGTGGTC-AGCAACGTGACTTTTTTTGGTTTTAAAAA---TCTGAC---CAGAGACACCA--TA-TGGACTTCTAGAAAAA--GAAAG--GTCGTTTGAGTC---TTTTT-tgggccaca
gi|14 : CACGGTGT-GGAATGGGGACGGACTATTCCTG----GGGTTTT-------TTGCG-CG-TTTTC---AGACTAAGCGTGCTC-AGCAACG-GGCTTTTCGGGGTTT-AAAAA---TCCGAC---CAGAGACACtca
gi|15 : taaT-GGCACCGGA---CTTATT-G-------TTTTT--A---------TAATATGT--ATTTTGTATTGCATTTAG-AATTTAAAATC--------AAAAGA---AAG--AACACATTGT-------------GGTTGAACAGGCC-AA-------AGAGAA
gi|16 : --------AGGAGA---AAG--AAAACATTGT-------------GGTGAAACAGGCCAAA-------AGAGAAG-AAAAAATGA-CTATATACGACAGTATA----T------------TAGG--CACGGACAGTATTCG
gi|17 : caCATGGTGT-GGAATGGGGACGGACTATCCGT
gi|2 : TGTGCACG-TGCAGGAATGGGGACGGACTTCCCGTG----TTATTTA---------ACGACGCTTTCCCCAAGACTAAG-GTCCTCCAACAACG-AACTTTTTGTGGTTT-AAAAACAATCTGACAGTCAGA-ACTCAGGCTACTAGACTCCTAGAGAAGCGAAAAAAAGTCG-----GTCGAGTTTTT-CAAATC--TTTCAATGGGAATACATATAACGTATCCTATGCTATATGGCATTTCAAAACTAAATCTTACCAAAGT-GGCCTACGTTCTTG--CAAAACAA-CATC-C-TAA--CAAATCTTGAAA-AAAGATCGACA-TCCGT--------CAAA------TGC-CGTCAAGTGTTCT--TTTCTAGAAACTAGAGCAGTCACGAGTATCGAAT--AATCTTATTATCATTGACAAG-CTAT-TTCGTT----TTGTT-ATGCCACACTACCAAATTGTCATC-AGCGATGCTTAGTAAATTCCACTCAAAGATCA------------------AGTCTCAATCCCTGGCTCGGTTTTTGA--TGGAA----TTTGATTTAT------CG----C----ACACCTGG--AACAGA-TTAATTTGTGTGTCT---CACTGAT--GATACTGATTCAAATTTTTGGGCAC--GA---TGGATTGGG--TAA-TCTCTGCA---------TTCTGAGTCGACTATTGATCGT-TTTAG-AAT-------T--------AAGAGA---GAG---AAACTTTGT-------------GGTTGAACA-GCC-AA-------AGAGAAG-AAAACATGA-C-AT-
gi|3 : ttattttttattttttcgtccACGGTGC-GGAATGGGGACGGACTATCTGTG----GG----T----TTTTTGCG-CG-TTTCC---AGACTAAGCGTGATC-AGCAACG-GACTTTTCGGGGTTT-AAAAA---Tatttattgataacgatagt
gi|3 : CCACATTCTT---CAAAA-AA-C--C-CTACA--CAAA-CTTAGAA-AATGATCGA-A-TTTGT--------CAAA------TGC-CGTCACGT----T--TTTCTAGAAA-TA-------CA------TCGATT--ATTCTTAT--TCACTG----A-CTGT-AT--TT----TCGTT-GT-------TAAAAGA-TGTAATCTATCG-------------CTTACTTGGTAATCGACTCAAATATCATATCATA----CATGCCTT-GTT---TTTT---TTTGGAAAATGTTG-ATTTATCGTAAACGGGTTCGTACACCCTTGG-CAACGGACTA--TTTGTGTGC-----T-CTG-T--AAT--TGGTTCAAATTGTT-GGCACCGGA---CTTATT--G--T-G-TTT----A---------TAATATGT--ATTCTGT---------------------------------------------AAAACATTGT-------------GGTTGAACAGGCC-AA-------AGAGAAG--AAAAATG----AT-TACGCTAGTATATTATT------------TAGG--TAC-GAC--TAATCGGACTAATACCCAACTGACAATATTTATGTTTTAGCATATTATACTTATTGAAGtggattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccacattcttcaaaaaaccctacacaaacttagaaaatgatcgaatttgtcaaatgccgtcacgtttttctagaaatacatcgattattcttattcactgactgtattttcgttgttaaaagatgtaatctatcgcttacttggtaatcgactcaaatatcatatcatacatgccttgtttttttttggaaaatgttgatttatcgtaaacgggttcgtacacccttggcaacggactatttgtgtgctctgtaattggttcaaattgttggcaccggacttattgtgtttataatatgtattctgtaaaacattgtggttgaacaggccaaagagaagaaaaatgattacgctagtatattatttaggtacgactaatcggactaatacccaactgacaatatttatgttttagcatattatacttattgaag
gi|4 : acggtgcggaatggggacggactatctgtgggttttttgcgcgtttccagactaagcgtgatcagcaacggacttttcggggtttaaaaattggattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-C--C-C-ACAATTAAC-CTTGGAA-AAAGATGGA-AGTCCATTGTTGTACCAAAGCTCTCTGTTCACCGCTT----TCCTTTTTAGAAAATAACC----CAA----ATCGAATTTATTCTTAT--TCACTG----GACTGT-AT--TTAGGCCCGTTAGT-------TGCAAA
gi|4 : TGTCTTGGTT---TTTTTTATTTGGAAAATGTTGAATTTATC-----CG----TGTTAA-CCTTGGCCAACGG-CAT--TTGGTGTGCCTCCCC-CTG-TAAAAT--TGTTCCAAAATTTT-GG---CGGAACCCTTATT--G--T-G-TT--TACA---------TTGTtcacttaaccaagatattggtcacgcaagtcttctatctgactgtacttctagtaaggtctacttcaacgggcaagactcatggagccatgggaacatgccgttgtcttggttttttttatttggaaaatgttgaatttatccgtgttaaccttggccaacggcatttggtgtgcctccccctgtaaaattgttccaaaattttggcggaacccttattgtgtttacattgt
gi|5 : cccacaattaaccttggaaaaagatggaagtccattgttgtaccaaagctctctgttcaccgctttcctttttagaaaataacccaaatcgaatttattcttattcactggactgtatttaggcccgttagttgcaaatcacttaaccaagatattggtcacgcaagtcttctatctgactgtacttctagtaaggtctacttcaacgggcaagactcatggagccatgggaacatgccgtTGGGGACGTACTTTCCGTG----TTATTTT---------GCG-CG----AC---AGACTAAGCGTGCTC-AGCAACG-GACTTTTCGTGGTGT-AGAAT---TCTGAC---CGGAGTAATAA--AA-TTAAT-TCGGGAGAAA--GGAAGAAGTCG--TTATTC---TTTTTTCAAAACATTTTCGA--GGAATAA-CGTAA--TATCCGATG--GGGTAGTATTT-ATAACTACAT-TTATCAAATATGGTCCACATTCGT---CAAAA-CA-T--CAC-ACA--CAAA-TCTGAAACAAAGATCGA-A-ACCAT--------CAAA------TGC-TGTCATGT----T--TTTCTAGAAA-T---------AC----ATCGAAT--TTTCTTAT--TCACTG----A-CTGT-AT--TT----TTGTT-GT-------AACAAAA-TGTAATGTATA-----------------ACTTTGCAATCG------------------A----C
gi|6 : TGTCTTGGTT---TTTTTTATTTGGAAAATGTTGAATTTATC-----CG----TGTTAA-CCTTGGCCAACGG-CAT--TTGGTGTGCCTCCCC-CTG-TAAAAT--TGTTCCAAAATTTT-GG---CGGAACCCTTATT--G--T-G-TT--TACA---------TTGTttaaagatcaaatc
gi|6 : ATATGT--ATTTTGTATTGCATTTAGAAAT-------CCAAACCGAAAGAGACTGAAGAAAAAACATTGTGGCCACCAGCGCCGGTTGAACAGGCC-AATAAAATCAAAGAAG-AAAAAgccgaacacgggtgctttcggaaacgcacgacctgcccatcacagggcgagaaagctaatatgtattttgtattgcatttagaaatccaaaccgaaagagactgaagaaaaaacattgtggccaccagcgccggttgaacaggccaataaaatcaaagaagaaaaag
gi|7 : tgtcttggttttttttatttggaaaatgttgaatttatccgtgttaaccttggccaacggcatttggtgtgcctccccctgtaaaattgttccaaaattttggcggaacccttattgtgtttacattgtgccgaacacgggtgctttcggaaacgcacgacctgcccatcacagggcgagaaagctaTGTGTGCT------CTG-T--AAT--TGGTTCAAATCTTT-GATGCTGGG---CTGATT-GGG-T-AATTCCTGCACTGGACTTATTGTGTGT--AC-ATGTATTGCATTTAG-AAT-------C--------AAGAGA---AAG--AAAACATTGT-------------GGTTGAAAAGGCC-AA-------GGAGAAG-AAACAATGA-CAAT-TACGATAGTACA----TGTATATTACATGTAGGTATAC-GAT--TATTCGGACTAAT-----------AATAT-----------------GTACCTATTGAAGCCTTAATAATAGCGATAAATACATATA-TACATg
gi|8 : agattcatttactgtacTGGGGACGGACTTTCCGTG----TTATTTT---------ACG-CG-TTTCA---AAAGTAAGCGTGTTC-AGCAACG-GACTTT--------------A---TCTGAT---CAGAAAAATAA--TA-TGGAC-TATAGAGAAA--GAAAGAAGTCG--TAAGTC---TTTTT-CAAATCATTTACAC--GGAATAT-CGTGA--TATCCCATG--AGATAGCATTC-ATAACTAAAT-TTACCAAATTTAGCTCACATTCTT---CAAAA-AATC--C-T-ACA--CAAA-CTTGAAA-AAAAATCGA-A-TCCGT--------CAAA------TGC-CGTTATGT----T--TTTCTAG
gi|9 : ACGGTGT-GGAATGGGGACGGACTATCCGTGCTTTTTTTTTT----TTTTTGCG-CG-TTTCC---AGACTAAGCGTGCTC-AGCAATG-GACTTTTCGGGGTTT-AAAAA---TCGGAC---CAGAGACACAT--TA-TGGAC-CCTACAGAAA--TAAATAAGTCG--TAAGTC---TTTTT-CAAATCATTTTCAC--GGAATAT-CGTAA--TATCCCATG--AGATAGTATTT-ATAACTAAAT-GTACCAAATTTGGCCAACATTCTT---
Alignments
lowQualScore : 1111 444444444 1 111 111 22222222 111111 1111111 77777777777777777 11 11 222222 11 1111 2222222 1 55555555555555555 66666666666666666666666 111 1 333333333333 11 4444444 11 111 66666666666666666666666666 3333333333333333 3333333333333 1111111 1111 66666666666666666 11 1 11 333333333333333333 1
lowQualScore : 77 1 0000 5 222222222 4 4 777 4 4 1 4 777 888 888 5 1 0 77 66 888 5 222 66 77 77 5 5 555 6 5 77 666 99 6 6 6 6 44444444 999999 6 4444444 00000000000000000 1 11 11 111111 8 11 7777 8 6666666 0 3 88888888888888888 22 1 77777777777777777777777 6 111 1 9 888888888888 3 6 77 999999 8888888 5 55 77 5 4 777 33333333333333333333333333 0 77 1 1 5 2222222222222222 888 66 1111111111111 5 8888888 6 9999 8 33333333333333333 33 0 33 7 111111111111111111 5
lowQualScore : .. . .... . ......... . . ... . . . . ... ... ... . . . .. .. ... . ... .. .. .. . . ... . . .. ... .. . . . . ........ ...... . ....... ................. . .. .. ...... . .. .... . ....... . . ................. .. . ....................... . ... . . ............ . . .. ...... ....... . .. .. . . ... .......................... . .. . . . ................ ... .. ............. . ....... . .... . ................. .. . .. . .................. .
lowQualScore : 11 0 6666 5 666666666 4 4 888 4 4 1 4 888 888 999 7 4 7 99 99 888 0 111 00 99 99 7 7 777 7 7 99 000 22 7 7 7 7 22222222 222222 7 3333333 66666666666666666 4 00 00 444444 0 00 0000 0 0000000 0 2 88888888888888888 22 0 00000000000000000000000 7 777 3 8 333333333333 7 7 55 888888 1111111 7 77 99 0 5 555 00000000000000000000000000 8 99 0 4 7 6666666666666666 888 99 4444444444444 7 6666666 7 8888 0 55555555555555555 88 0 88 3 777777777777777777 5
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGCACGGTGC-GGAATGGGGACGGACTNTCCGTG----TTATTTT----TTTTTGCG-CG-TTTCC---AGACTAAGCGTGCTC-AGCAACG-GACTTTTCGGGGTTT-AAAAA---TCTGAC---CAGAGACACAN--TA-TGGAC-CCTAGAGAAA--GAAAGAAGTCG--TAAGTC---TTTTT-CAAATCATTTTCAC--GGAATAT-CGTAA--TATCCCATG--AGATAGTATTT-ATAACTAAAT-TTACCAAATTTGGCCCACATTCTT---CAAAA-AA-C--C-C-ACA--CAAA-CTTGGAA-AAAGATCGA-A-TCCGT--------CAAA------TGC-CGTCACGT----T--TTTCTAGAAA-TA-------CAC----ATCGAAT--ATTCTTAT--TCACTG----G-CTGT-AT--TT----TCGTT-GT-------TACAAAA-TGTAATCTATCG-------------CCTACTCGGNAATCG------------------A----CATGCCTTGGTT---TTTTTTATTTGGAAAATGTTGAATTTATC-----CG----CGTAAACCCTTGGCCAACGGACTT--TTTGTGTGCCT---C-CTG-T--AAT--TGGTTCAAATTTTT-GGCACCGGA---CTTATT-GG--T-G-TTTCTGCA---------TTATATGT--ATTNTGTATTGCATTTAG-AAT-------C--------AAGAGA---AAG--AAAACATTGT-------------GGTTGAACAGGCC-AA-------AGAGAAG-AAAAAATGA-C-AT-TACGACAGTATA----T------------TAGG--TAC-GAC--TATTCGGACTAATACCCAACTGACAATATTTATGCTTTAGCATA--GTACTTATTGAAGCCTTGATAATAGCGATAAATACATGTATTACAT
Reference ( family-6401 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGCACGGTGC-GGAATGGGGACGGACTNTCCGTG----TTATTTT----TTTTTGCG-CG-TTTCC---AGACTAAGCGTGCTC-AGCAACG-GACTTTTCGGGGTTT-AAAAA---TCTGAC---CAGAGACACAN--TA-TGGAC-CCTAGAGAAA--GAAAGAAGTCG--TAAGTC---TTTTT-CAAATCATTTTCAC--GGAATAT-CGTAA--TATCCCATG--AGATAGTATTT-ATAACTAAAT-TTACCAAATTTGGCCCACATTCTT---CAAAA-AA-C--C-C-ACA--CAAA-CTTGGAA-AAAGATCGA-A-TCCGT--------CAAA------TGC-CGTCACGT----T--TTTCTAGAAA-TA-------CAC----ATCGAAT--ATTCTTAT--TCACTG----G-CTGT-AT--TT----TCGTT-GT-------TACAAAA-TGTAATCTATCG-------------CCTACTCGGNAATCG------------------A----CATGCCTTGGTT---TTTTTTATTTGGAAAATGTTGAATTTATC-----CG----CGTAAACCCTTGGCCAACGGACTT--TTTGTGTGCCT---C-CTG-T--AAT--TGGTTCAAATTTTT-GGCACCGGA---CTTATT-GG--T-G-TTTCTGCA---------TTATATGT--ATTNTGTATTGCATTTAG-AAT-------C--------AAGAGA---AAG--AAAACATTGT-------------GGTTGAACAGGCC-AA-------AGAGAAG-AAAAAATGA-C-AT-TACGACAGTATA----T------------TAGG--TAC-GAC--TATTCGGACTAATACCCAACTGACAATATTTATGCTTTAGCATA--GTACTTATTGAAGCCTTGATAATAGCGATAAATACATGTATTACAT
gi|1 : TATGCACGGTGT-GGAATGGGGACGGACTATCCGTG----TTTTTTTTTTTTTTTTGCA-CG-TTTCC---AGACTAAGCGTGCTC-AGCAACG-AAATTTTTGGGGTTT-AAAAA---TCGGAC---CAGAGACACAT--TA-TGGAC-CTTACAGAAA--AAAAGAAGTCG--TAAGTC---TTTTT-CAAATCATTTTCAC--GGAATAT-CGTAA--TATCCCATG--AGATAGTATTT-ATAACTAAAT-GTACCAAATTTGGCCTACATTCTT---CAAAA-AA-C--C-T-ACA--CAAA-CTTGGAA-AATGATCGA-A-TTTGT--------CAAA------TGC-CGTCACGT----T--TTTCTAGAAA-T---------AC----ATCGATT--ATTCTTAT--CCACTG----G-CTGTAAT--TT----TTTTT-GT-------TACAAAA-TGTAATCTATCG-------------CCTACTTGGAAATCG------------------A----TATGCCTT-GTT---TTTTTT-TTT-GAAAATGTTG-ATTTAT------------CGTAAACCCTTGG-CAACGGACTT--TTTGTGTGC-----T-CTG-T--AAT--TCGTTCAAATTTTT-GGCACCGGA---CTGATT-GGGTC-A-TTTCTGCACCGGTGT--TTATATGT--ATTATGTATTGCATTTAG-AAT-------C--------AAGAGA---AAG--AAAACATTGT-------------GGTTGAACAGGCC-AA-------AGAGAAGAAAAAAATGACC-AT-TACGACAGTATA----T------------TAGG--TAC-GAC--TATTCGGACTAATACCCAACTGACAATATTTATGCTTTAACATA---TACTTATTGAAGCCTTGATAATAGCGATAAATACATGTATTACAT
gi|10 : atttttttcttctcatatctattaaatgg------------------A----CATGCCTTG-------TATTT-TTTGGAAAATATTGA-TTTATC------------GTAAACCCTTGGC-AACGGACTT--TTTGTGTGCT------CTG-T--AAT--TGGTTCAAATTTTT-GGCACCGGA---CTTATT--G--T-G-TTT----A---------TAATATGT--ATTTTGTATTGCATTTAG-AAT-------C--------AAGAGA---AAG--AAAA
gi|11 : aaaagtgatctatatatatatcgcttatagtaatcgactcaaagatcatatcatacatgtACGGTGT-GGAATGGGGACGGACTTTCCGTG----TTATTTT---------GTG-CT-TTTCC---AGACTAAGCGTGCTC-AGCAAAG-GACTTTTCGGGGTTT-AAGAA---TCTGAC---CAGCGACACAT--TA-TGGAC-CCTACAGAAA--GAAAGAAGCCG--TAAGTC---TTTTT-CAAATCATTTTCA-----------CGTAA--TATCCCATG--AGATAGTATTT-ATAAATAGAT-TTACCAAATT
gi|12 : GAAGTCG--TAAGTC---TTTTT-CAAATCATTTTCAC--GGAATAT-CTGAA--TATCCCATG--AGATAGTATTT-ATTACTAAAT-TTACCAAATTTGGCCCACATTCTTAAACAAGA-GG-C--C-C-A
gi|13 : ----TTTTAATG-CG-TTTCC---AGACTAAGTGTGGTC-AGCAACGTGACTTTTTTTGGTTTTAAAAA---TCTGAC---CAGAGACACCA--TA-TGGACTTCTAGAAAAA--GAAAG--GTCGTTTGAGTC---TTTTT-tgggccaca
gi|14 : CACGGTGT-GGAATGGGGACGGACTATTCCTG----GGGTTTT-------TTGCG-CG-TTTTC---AGACTAAGCGTGCTC-AGCAACG-GGCTTTTCGGGGTTT-AAAAA---TCCGAC---CAGAGACACtca
gi|15 : taaT-GGCACCGGA---CTTATT-G-------TTTTT--A---------TAATATGT--ATTTTGTATTGCATTTAG-AATTTAAAATC--------AAAAGA---AAG--AACACATTGT-------------GGTTGAACAGGCC-AA-------AGAGAA
gi|16 : --------AGGAGA---AAG--AAAACATTGT-------------GGTGAAACAGGCCAAA-------AGAGAAG-AAAAAATGA-CTATATACGACAGTATA----T------------TAGG--CACGGACAGTATTCG
gi|17 : caCATGGTGT-GGAATGGGGACGGACTATCCGT
gi|2 : TGTGCACG-TGCAGGAATGGGGACGGACTTCCCGTG----TTATTTA---------ACGACGCTTTCCCCAAGACTAAG-GTCCTCCAACAACG-AACTTTTTGTGGTTT-AAAAACAATCTGACAGTCAGA-ACTCAGGCTACTAGACTCCTAGAGAAGCGAAAAAAAGTCG-----GTCGAGTTTTT-CAAATC--TTTCAATGGGAATACATATAACGTATCCTATGCTATATGGCATTTCAAAACTAAATCTTACCAAAGT-GGCCTACGTTCTTG--CAAAACAA-CATC-C-TAA--CAAATCTTGAAA-AAAGATCGACA-TCCGT--------CAAA------TGC-CGTCAAGTGTTCT--TTTCTAGAAACTAGAGCAGTCACGAGTATCGAAT--AATCTTATTATCATTGACAAG-CTAT-TTCGTT----TTGTT-ATGCCACACTACCAAATTGTCATC-AGCGATGCTTAGTAAATTCCACTCAAAGATCA------------------AGTCTCAATCCCTGGCTCGGTTTTTGA--TGGAA----TTTGATTTAT------CG----C----ACACCTGG--AACAGA-TTAATTTGTGTGTCT---CACTGAT--GATACTGATTCAAATTTTTGGGCAC--GA---TGGATTGGG--TAA-TCTCTGCA---------TTCTGAGTCGACTATTGATCGT-TTTAG-AAT-------T--------AAGAGA---GAG---AAACTTTGT-------------GGTTGAACA-GCC-AA-------AGAGAAG-AAAACATGA-C-AT-
gi|3 : ttattttttattttttcgtccACGGTGC-GGAATGGGGACGGACTATCTGTG----GG----T----TTTTTGCG-CG-TTTCC---AGACTAAGCGTGATC-AGCAACG-GACTTTTCGGGGTTT-AAAAA---Tatttattgataacgatagt
gi|3 : CCACATTCTT---CAAAA-AA-C--C-CTACA--CAAA-CTTAGAA-AATGATCGA-A-TTTGT--------CAAA------TGC-CGTCACGT----T--TTTCTAGAAA-TA-------CA------TCGATT--ATTCTTAT--TCACTG----A-CTGT-AT--TT----TCGTT-GT-------TAAAAGA-TGTAATCTATCG-------------CTTACTTGGTAATCGACTCAAATATCATATCATA----CATGCCTT-GTT---TTTT---TTTGGAAAATGTTG-ATTTATCGTAAACGGGTTCGTACACCCTTGG-CAACGGACTA--TTTGTGTGC-----T-CTG-T--AAT--TGGTTCAAATTGTT-GGCACCGGA---CTTATT--G--T-G-TTT----A---------TAATATGT--ATTCTGT---------------------------------------------AAAACATTGT-------------GGTTGAACAGGCC-AA-------AGAGAAG--AAAAATG----AT-TACGCTAGTATATTATT------------TAGG--TAC-GAC--TAATCGGACTAATACCCAACTGACAATATTTATGTTTTAGCATATTATACTTATTGAAGtggattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccacattcttcaaaaaaccctacacaaacttagaaaatgatcgaatttgtcaaatgccgtcacgtttttctagaaatacatcgattattcttattcactgactgtattttcgttgttaaaagatgtaatctatcgcttacttggtaatcgactcaaatatcatatcatacatgccttgtttttttttggaaaatgttgatttatcgtaaacgggttcgtacacccttggcaacggactatttgtgtgctctgtaattggttcaaattgttggcaccggacttattgtgtttataatatgtattctgtaaaacattgtggttgaacaggccaaagagaagaaaaatgattacgctagtatattatttaggtacgactaatcggactaatacccaactgacaatatttatgttttagcatattatacttattgaag
gi|4 : acggtgcggaatggggacggactatctgtgggttttttgcgcgtttccagactaagcgtgatcagcaacggacttttcggggtttaaaaattggattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-C--C-C-ACAATTAAC-CTTGGAA-AAAGATGGA-AGTCCATTGTTGTACCAAAGCTCTCTGTTCACCGCTT----TCCTTTTTAGAAAATAACC----CAA----ATCGAATTTATTCTTAT--TCACTG----GACTGT-AT--TTAGGCCCGTTAGT-------TGCAAA
gi|4 : TGTCTTGGTT---TTTTTTATTTGGAAAATGTTGAATTTATC-----CG----TGTTAA-CCTTGGCCAACGG-CAT--TTGGTGTGCCTCCCC-CTG-TAAAAT--TGTTCCAAAATTTT-GG---CGGAACCCTTATT--G--T-G-TT--TACA---------TTGTtcacttaaccaagatattggtcacgcaagtcttctatctgactgtacttctagtaaggtctacttcaacgggcaagactcatggagccatgggaacatgccgttgtcttggttttttttatttggaaaatgttgaatttatccgtgttaaccttggccaacggcatttggtgtgcctccccctgtaaaattgttccaaaattttggcggaacccttattgtgtttacattgt
gi|5 : cccacaattaaccttggaaaaagatggaagtccattgttgtaccaaagctctctgttcaccgctttcctttttagaaaataacccaaatcgaatttattcttattcactggactgtatttaggcccgttagttgcaaatcacttaaccaagatattggtcacgcaagtcttctatctgactgtacttctagtaaggtctacttcaacgggcaagactcatggagccatgggaacatgccgtTGGGGACGTACTTTCCGTG----TTATTTT---------GCG-CG----AC---AGACTAAGCGTGCTC-AGCAACG-GACTTTTCGTGGTGT-AGAAT---TCTGAC---CGGAGTAATAA--AA-TTAAT-TCGGGAGAAA--GGAAGAAGTCG--TTATTC---TTTTTTCAAAACATTTTCGA--GGAATAA-CGTAA--TATCCGATG--GGGTAGTATTT-ATAACTACAT-TTATCAAATATGGTCCACATTCGT---CAAAA-CA-T--CAC-ACA--CAAA-TCTGAAACAAAGATCGA-A-ACCAT--------CAAA------TGC-TGTCATGT----T--TTTCTAGAAA-T---------AC----ATCGAAT--TTTCTTAT--TCACTG----A-CTGT-AT--TT----TTGTT-GT-------AACAAAA-TGTAATGTATA-----------------ACTTTGCAATCG------------------A----C
gi|6 : TGTCTTGGTT---TTTTTTATTTGGAAAATGTTGAATTTATC-----CG----TGTTAA-CCTTGGCCAACGG-CAT--TTGGTGTGCCTCCCC-CTG-TAAAAT--TGTTCCAAAATTTT-GG---CGGAACCCTTATT--G--T-G-TT--TACA---------TTGTttaaagatcaaatc
gi|6 : ATATGT--ATTTTGTATTGCATTTAGAAAT-------CCAAACCGAAAGAGACTGAAGAAAAAACATTGTGGCCACCAGCGCCGGTTGAACAGGCC-AATAAAATCAAAGAAG-AAAAAgccgaacacgggtgctttcggaaacgcacgacctgcccatcacagggcgagaaagctaatatgtattttgtattgcatttagaaatccaaaccgaaagagactgaagaaaaaacattgtggccaccagcgccggttgaacaggccaataaaatcaaagaagaaaaag
gi|7 : tgtcttggttttttttatttggaaaatgttgaatttatccgtgttaaccttggccaacggcatttggtgtgcctccccctgtaaaattgttccaaaattttggcggaacccttattgtgtttacattgtgccgaacacgggtgctttcggaaacgcacgacctgcccatcacagggcgagaaagctaTGTGTGCT------CTG-T--AAT--TGGTTCAAATCTTT-GATGCTGGG---CTGATT-GGG-T-AATTCCTGCACTGGACTTATTGTGTGT--AC-ATGTATTGCATTTAG-AAT-------C--------AAGAGA---AAG--AAAACATTGT-------------GGTTGAAAAGGCC-AA-------GGAGAAG-AAACAATGA-CAAT-TACGATAGTACA----TGTATATTACATGTAGGTATAC-GAT--TATTCGGACTAAT-----------AATAT-----------------GTACCTATTGAAGCCTTAATAATAGCGATAAATACATATA-TACATg
gi|8 : agattcatttactgtacTGGGGACGGACTTTCCGTG----TTATTTT---------ACG-CG-TTTCA---AAAGTAAGCGTGTTC-AGCAACG-GACTTT--------------A---TCTGAT---CAGAAAAATAA--TA-TGGAC-TATAGAGAAA--GAAAGAAGTCG--TAAGTC---TTTTT-CAAATCATTTACAC--GGAATAT-CGTGA--TATCCCATG--AGATAGCATTC-ATAACTAAAT-TTACCAAATTTAGCTCACATTCTT---CAAAA-AATC--C-T-ACA--CAAA-CTTGAAA-AAAAATCGA-A-TCCGT--------CAAA------TGC-CGTTATGT----T--TTTCTAG
gi|9 : ACGGTGT-GGAATGGGGACGGACTATCCGTGCTTTTTTTTTT----TTTTTGCG-CG-TTTCC---AGACTAAGCGTGCTC-AGCAATG-GACTTTTCGGGGTTT-AAAAA---TCGGAC---CAGAGACACAT--TA-TGGAC-CCTACAGAAA--TAAATAAGTCG--TAAGTC---TTTTT-CAAATCATTTTCAC--GGAATAT-CGTAA--TATCCCATG--AGATAGTATTT-ATAACTAAAT-GTACCAAATTTGGCCAACATTCTT---
blockSeqs : CA T CTTT A TTTTA A C CCA C T G T CAA AGT GGC C T CG TT GAG T ATG CA CG CT C C AAA C T AT CT AT T C C G TGTTGTAC GCTCTC T GTTCT CTAGAGCAGTCACGAGT A TT TA ACAAG . CG AGGC A GCCACAC T T GATGCTTAGTAAATTCC CA A ACTCAAATATCATATCATA G CGG A A CGTAAACGGGTT A C CC ATTAA CTCCCC A AA AC G C ACC GGGTAATTCCTGCACTGGACTTA CG T A A CCAAACCGA CTG AA GGCCACCAGCGCC A TAAAATC . ACT A TGTATATTACATG TA G AG A TTATGTTTTAGCATATTA .
blockSeqs : T A . G TTTTT . . . . . T . . . T . T . . . . C T . . . . G . . . AC . . . . . . . . TCC ATAACCCAA T . . GA . . . . . . T GCTT TG T AGTCT G . A G CCG A C CC ACTT CTCCCC . AA . . C ACC GGGTAATCTCTGCA . T A . TTAAAATC . . . . . . ACA . TTATT . . . . G
blockSeqs : T A . A TTTTT . . . . . G . . . A . . . . . . A A . . . . . . . . C . . . . . . . . T TACA A . . A . . . . . . . . TT C A G . A A CCG T C C ACTA CTCA . . . . C . GTGTTTACA . A A . C . . . . . . AC . T . . .
blockSeqs : T T . A TT . . . . . T . . . A . . . . . . C T . . . . . . . . C . . . . . . . . T TAC A . . A . . . . . A G . . A CG T . C CAT T . . . . C . GTGTTTACA . C A . T . . . . . . . .
blockSeqs : C A . A . . . . . . G . . . A . . . . . . C T . . . . . . . . C . . . . . . . . T . . . . C . . . CAT T . . . . T . GTGTTTA . T . . C . . . . . .
blockSeqs : T T . T . . . . . . T . . . T . . . . . . . . . . . . . . . T T . . . . . . GTTTTTA . A . . . . . . . .
blockSeqs : T . . . . . . . . G . . . . . . . . . GTGTTTA . .
blockSeqs : A . . . . . . . . .
blockSeqCons : T******** TAGCA************ CCG********* C* GTGTTTACA*****************
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGCACGGTGC-GGAATGGGGACGGACTNTCCGTG----TTATTTT----TTTTTGCG-CG-TTTCC---AGACTAAGCGTGCTC-AGCAACG-GACTTTTCGGGGTTT-AAAAA---TCTGAC---CAGAGACACAN--TA-TGGAC-CCTAGAGAAA--GAAAGAAGTCG--TAAGTC---TTTTT-CAAATCATTTTCAC--GGAATAT-CGTAA--TATCCCATG--AGATAGTATTT-ATAACTAAAT-TTACCAAATTTGGCCCACATTCTT---CAAAA-AA-C--C-C-ACA--CAAA-CTTGGAA-AAAGATCGA-A-TCCGT--------CAAA------TGC-CGTCACGT----T--TTTCTAGAAA-TA-------CAC----ATCGAAT--ATTCTTAT--TCACTG----G-CTGT-AT--TT----TCGTT-GT-------TACAAAA-TGTAATCTATCG-------------CCTACTCGGNAATCG------------------A----CATGCCTTGGTT---TTTTTTATTTGGAAAATGTTGAATTTATC-----CG----CGTAAACCCTTGGCCAACGGACTT--TTTGTGTGCCT---C-CTG-T--AAT--TGGTTCAAATTTTT-GGCACCGGA---CTTATT-GG--T-G-TTTCTGCA---------TTATATGT--ATTNTGTATTGCATTTAG-AAT-------C--------AAGAGA---AAG--AAAACATTGT-------------GGTTGAACAGGCC-AA-------AGAGAAG-AAAAAATGA-C-AT-TACGACAGTATA----T------------TAGG--TAC-GAC--TATTCGGACTAATACCCAACTGACAATATTTATGCTTTAGCATA--GTACTTATTGAAGCCTTGATAATAGCGATAAATACATGTATTACAT
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGCACGGTGC-GGAATGGGGACGGACTNTCCGTG----TTATTTTT--------GCG-CG-TTTCC---AGACTAAGCGTGCTC-AGCAACG-GACTTTTCGGGGTTT-AAAAA---TCTGAC---CAGAGACACAN--TA-TGGAC-CCTAGAGAAA--GAAAGAAGTCG--TAAGTC---TTTTT-CAAATCATTTTCAC--GGAATAT-CGTAA--TATCCCATG--AGATAGTATTT-ATAACTAAAT-TTACCAAATTTGGCCCACATTCTT---CAAAA-AA-C--C-C-ACA--CAAA-CTTGGAA-AAAGATCGA-A-TCCGT--------CAAA------TGC-CGTCACGT----T--TTTCTAGAAATAGCA------------ATCGAAT--ATTCTTAT--TCACTG----G-CTGT-AT--TT----TCGTT-GT-------TACAAAA-TGTAATCTATCG-------------CCTACTCGGNAATCG------------------A----CATGCCTTGGTT---TTTTTTATTTGGAAAATGTTGAATTTATCCG---------CGTAAACCCTTGGC-AACGGACTT--TTTGTGTGCCT---C-CTG-T--AAT--TGGTTCAAATTTTT-GGCACCGGA---CTTATTGTGTTTACA-----------------TTATATGT--ATTNTGTATTGCATTTAG-AAT-------C--------AAGAGA---AAG--AAAACATTGT-------------GGTTGAACAGGCC-AA-------AGAGAAG-AAAAAATGA-C-AT-TACGACAGTATA----T------------TAGG--TAC-GAC--TATTCGGACTAATACCCAACTGACAATATTTATGCTTTAGCATA--GTACTTATTGAAGCCTTGATAATAGCGATAAATACATGTATTACAT
Alignments
lowQualScore : 11111111 222222222 1 111 111 22222222 111111 1111111 7777777777777777777777 11 11 222222 11 1111 2222222 1 55555555555555555 66666666666666666666666 111 1 333333333333 1 4444444 11 111 444444444444444444444444444444444 1111111 3333333333333333 3333333333333 1111111 1111 66666666666666666 11 1 11 333333333333333333 1
lowQualScore : 77 1 777 88888888 6 66 999999999 777 4 4 1 4 777 888 888 5 1 0 77 66 888 5 222 66 77 77 5 5 555 6 5 77 666 99 6 6 6 6 44444444 999999 6 4444444 7777777777777777777777 1 11 11 111111 8 11 7777 8 6666666 0 3 88888888888888888 22 1 77777777777777777777777 6 111 1 9 888888888888 3 6 3 999999 8888888 5 55 77 5 4 777 777777777777777777777777777777777 1 8888888 77 5 5 2222222222222222 888 66 1111111111111 5 8888888 6 9999 8 33333333333333333 33 0 33 7 111111111111111111 5
lowQualScore : .. . ... ........ . .. ......... ... . . . . ... ... ... . . . .. .. ... . ... .. .. .. . . ... . . .. ... .. . . . . ........ ...... . ....... ...................... . .. .. ...... . .. .... . ....... . . ................. .. . ....................... . ... . . ............ . . . ...... ....... . .. .. . . ... ................................. . ....... .. . . ................ ... .. ............. . ....... . .... . ................. .. . .. . .................. .
lowQualScore : 11 0 888 11111111 9 11 000000000 888 4 4 1 4 888 888 999 7 4 7 99 99 888 0 111 00 99 99 7 7 777 7 7 99 000 22 7 7 7 7 22222222 222222 7 3333333 6666666666666666666666 4 00 00 444444 0 00 0000 0 0000000 0 2 88888888888888888 22 0 00000000000000000000000 7 777 3 8 333333333333 7 7 3 888888 1111111 7 77 99 0 5 555 000000000000000000000000000000000 0 6666666 99 7 7 6666666666666666 888 99 4444444444444 7 6666666 7 8888 0 55555555555555555 88 0 88 3 777777777777777777 5
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGCACGGTGC-GGAATGGGGACGGACTNTCC---GTG--------TTNTTT--TT--------GCGCGTTTCC---AGACTAAGCGTGCT-CAGCAACG-GACTTTTCGGGGTTT-AAA---AATCTGAC---CAGAGACACA--NTA-TGGAC-CCTAGAGAA--AGAAAGAAGTCG--TAAGTC---TTTTT-CAAATCATTTTCA--CGGAATAT-CGTAA--TATCCCATG--AGATAGTATTT-ATAACTAAAT-TTACCAAATTTGGCCCACATTCTT---CAAAA-AA-C--C-C-ACA--CAAA-CTTGGAA-AAAGATCGA-A-TCCGT--------CAAA------TGC-CGTCACGT----T--TTTCTAGAAA-T---A-C---A---------ATCGAAT--ATTCTTAT--TCACTG----G-CTGT-AT--TT----TCGTT-GT-------TACAAAA-TGTAATCTATCG-------------CCTACTCGGNAATCG------------------A----CATGCCTTGGTT---TTTTTTATTTGGAAAATGTTGAATTTATC-----CG----CGTAAACCCTTGG-CAACGGACTT--TTTGTGTGCCT---C-CTG-T--AAT--TGGTTCAAATTTTT-GGCACCGGA---CTTATTGTG-----T--TT-----AC-------A-------TTATATGTATTNTG-------TATTG--CA-TTTAG-AAT-------C--------AAGAGA---AAG--AAAACATTGT-------------GGTTGAACAGGCC-AA-------AGAGAAG-AAAAAATGA-C-AT-TACGACAGTATA----T------------TAGG--TAC-GAC--TATTCGGACTAATACCCAACTGACAATATTTATGCTTTAGCATA--GTACTTATTGAAGCCTTGATAATAGCGATAAATACATGTATTACAT
Reference ( family-6401 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGCACGGTGC-GGAATGGGGACGGACTNTCC---GTG--------TTATTT--TT--------GCGCGTTTCC---AGACTAAGCGTGCT-CAGCAACG-GACTTTTCGGGGTTT-AAA---AATCTGAC---CAGAGACACA--NTA-TGGAC-CCTAGAGAA--AGAAAGAAGTCG--TAAGTC---TTTTT-CAAATCATTTTCA--CGGAATAT-CGTAA--TATCCCATG--AGATAGTATTT-ATAACTAAAT-TTACCAAATTTGGCCCACATTCTT---CAAAA-AA-C--C-C-ACA--CAAA-CTTGGAA-AAAGATCGA-A-TCCGT--------CAAA------TGC-CGTCACGT----T--TTTCTAGAAA-T---AGC---A---------ATCGAAT--ATTCTTAT--TCACTG----G-CTGT-AT--TT----TCGTT-GT-------TACAAAA-TGTAATCTATCG-------------CCTACTCGGNAATCG------------------A----CATGCCTTGGTT---TTTTTTATTTGGAAAATGTTGAATTTATC-----CG----CGTAAACCCTTGG-CAACGGACTT--TTTGTGTGCCT---C-CTG-T--AAT--TGGTTCAAATTTTT-GGCACCGGA---CTTATTGTG-----T--TT-----AC-------A-------TTATATGTATTNTG-------TATTG--CA-TTTAG-AAT-------C--------AAGAGA---AAG--AAAACATTGT-------------GGTTGAACAGGCC-AA-------AGAGAAG-AAAAAATGA-C-AT-TACGACAGTATA----T------------TAGG--TAC-GAC--TATTCGGACTAATACCCAACTGACAATATTTATGCTTTAGCATA--GTACTTATTGAAGCCTTGATAATAGCGATAAATACATGTATTACAT
gi|1 : TATGCACGGTGT-GGAATGGGGACGGACTATCC---GTG--------TTTTTT--TTTTTTTTTTGCACGTTTCC---AGACTAAGCGTGCT-CAGCAACG-AAATTTTTGGGGTTT-AAA---AATCGGAC---CAGAGACACA--TTA-TGGAC-CTTACAGAA--AAAAAGAAGTCG--TAAGTC---TTTTT-CAAATCATTTTCA--CGGAATAT-CGTAA--TATCCCATG--AGATAGTATTT-ATAACTAAAT-GTACCAAATTTGGCCTACATTCTT---CAAAA-AA-C--C-T-ACA--CAAA-CTTGGAA-AATGATCGA-A-TTTGT--------CAAA------TGC-CGTCACGT----T--TTTCTAGAAA-T---A-C-------------ATCGATT--ATTCTTAT--CCACTG----G-CTGTAAT--TT----TTTTT-GT-------TACAAAA-TGTAATCTATCG-------------CCTACTTGGAAATCG------------------A----TATGCCTT-GTT---TTTTTT-TTT-GAAAATGTTG-ATTTAT------------CGTAAACCCTTGG-CAACGGACTT--TTTGTGTGC-----T-CTG-T--AAT--TCGTTCAAATTTTT-GGCACCGGA---CTGATTGGGTCATTT--CT-----GC-------ACCGGTGTTTATATGTATTATG-------TATTG--CA-TTTAG-AAT-------C--------AAGAGA---AAG--AAAACATTGT-------------GGTTGAACAGGCC-AA-------AGAGAAGAAAAAAATGACC-AT-TACGACAGTATA----T------------TAGG--TAC-GAC--TATTCGGACTAATACCCAACTGACAATATTTATGCTTTAACATA---TACTTATTGAAGCCTTGATAATAGCGATAAATACATGTATTACAT
gi|10 : atttttttcttctcatatctattaaatgg------------------A----CATGCCTTG-------TATTT-TTTGGAAAATATTGA-TTTATC------------GTAAACCCTTGG-CAACGGACTT--TTTGTGTGCT------CTG-T--AAT--TGGTTCAAATTTTT-GGCACCGGA---CTTATTGTG-----T--TT-----AT-------A---------ATATGTATTTTG-------TATTG--CA-TTTAG-AAT-------C--------AAGAGA---AAG--AAAA
gi|11 : aaaagtgatctatatatatatcgcttatagtaatcgactcaaagatcatatcatacatgtACGGTGT-GGAATGGGGACGGACTTTCC---GTG--------TTATTT--T---------GTGCTTTTCC---AGACTAAGCGTGCT-CAGCAAAG-GACTTTTCGGGGTTT-AAG---AATCTGAC---CAGCGACACA--TTA-TGGAC-CCTACAGAA--AGAAAGAAGCCG--TAAGTC---TTTTT-CAAATCATTTTCA-----------CGTAA--TATCCCATG--AGATAGTATTT-ATAAATAGAT-TTACCAAATT
gi|12 : GAAGTCG--TAAGTC---TTTTT-CAAATCATTTTCA--CGGAATAT-CTGAA--TATCCCATG--AGATAGTATTT-ATTACTAAAT-TTACCAAATTTGGCCCACATTCTTAAACAAGA-GG-C--C-C-A
gi|13 : TTT--TA--------ATGCGTTTCC---AGACTAAGTGTGGT-CAGCAACGTGACTTTTTTTGGTTTTAAA---AATCTGAC---CAGAGACACC--ATA-TGGACTTCTAGAAAA--AGAAAG--GTCGTTTGAGTC---TTTTT-tgggccaca
gi|14 : CACGGTGT-GGAATGGGGACGGACTATTCCTGGGG--------TT--TT--TT--------GCGCGTTTTC---AGACTAAGCGTGCT-CAGCAACG-GGCTTTTCGGGGTTT-AAA---AATCCGAC---CAGAGACACtca
gi|15 : taaT-GGCACCGGA---CTTATTGTT-----T--TT-----AT-------A---------ATATGTATTTTG-------TATTG--CA-TTTAG-AATTTAAAATC--------AAAAGA---AAG--AACACATTGT-------------GGTTGAACAGGCC-AA-------AGAGAA
gi|16 : --------AGGAGA---AAG--AAAACATTGT-------------GGTGAAACAGGCCAAA-------AGAGAAG-AAAAAATGA-CTATATACGACAGTATA----T------------TAGG--CACGGACAGTATTCG
gi|17 : caCATGGTGT-GGAATGGGGACGGACTATCC---GT
gi|2 : TGTGCACG-TGCAGGAATGGGGACGGACTTCCC---GTG--------TTATTTAACG--------ACGC-TTTCCCCAAGACTAAG-GTCCTCCAACAACG-AACTTTTTGTGGTTT-AAAAACAATCTGACAGTCAGA-ACTCAGGCTACTAGACTCCTAGAGAAGCGAAAAAAAGTCG-----GTCGAGTTTTT-CAAATC--TTTCAATGGGAATACATATAACGTATCCTATGCTATATGGCATTTCAAAACTAAATCTTACCAAA-GTGGCCTACGTTCTTG--CAAAACAA-CATC-C-TAA--CAAATCTTGAAA-AAAGATCGACA-TCCGT--------CAAA------TGC-CGTCAAGTGTTCT--TTTCTAGAAA-CTAGAGC---AGTCACGAGTATCGAAT--AATCTTATTATCATTGACAAG-CTAT-TTCGTT----TTGTT-ATGCCACACTACCAAATTGTCATC-AGCGATGCTTAGTAAATTCCACTCAAAGATCA------------------AGTCTCAATCCCTGGCTCGGTTTTTGA--TGGAA----TTTGATTTAT------CG----C----ACACCTGG--AACAGA-TTAATTTGTGTGTCT---CACTGAT--GATACTGATTCAAATTTTTGGGCAC--GA---TGGATTGGG-----T------------------A-------ATCTCTGCATTCTGAGTCGACTATTGATCGTTTTAG-AAT-------T--------AAGAGA---GAG---AAACTTTGT-------------GGTTGAACA-GCC-AA-------AGAGAAG-AAAACATGA-C-AT-
gi|3 : ttattttttattttttcgtccACGGTGC-GGAATGGGGACGGACTATCT---GTG--------GGTTTT--TT--------GCGCGTTTCC---AGACTAAGCGTGAT-CAGCAACG-GACTTTTCGGGGTTT-AAA---AATatttattgataacgatagt
gi|3 : CCACATTCTT---CAAAA-AA-C--C-CTACA--CAAA-CTTAGAA-AATGATCGA-A-TTTGT--------CAAA------TGC-CGTCACGT----T--TTTCTAGAAA-T---A-C---A----------TCGATT--ATTCTTAT--TCACTG----A-CTGT-AT--TT----TCGTT-GT-------TAAAAGA-TGTAATCTATCG-------------CTTACTTGGTAATCGACTCAAATATCATATCATA----CATGCCTT-GTT---TTTT---TTTGGAAAATGTTG-ATTTATCGTAAACGGGTTCGTACACCCTTGG-CAACGGACTA--TTTGTGTGC-----T-CTG-T--AAT--TGGTTCAAATTGTT-GGCACCGGA---CTTATTGTG-----T--TT-----AT-------A---------ATATGTATTCTG-------T------------------------------------------------AAAACATTGT-------------GGTTGAACAGGCC-AA-------AGAGAAG--AAAAATG----AT-TACGCTAGTATATTATT------------TAGG--TAC-GAC--TAATCGGACTAATACCCAACTGACAATATTTATGTTTTAGCATATTATACTTATTGAAGtggattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccacattcttcaaaaaaccctacacaaacttagaaaatgatcgaatttgtcaaatgccgtcacgtttttctagaaatacatcgattattcttattcactgactgtattttcgttgttaaaagatgtaatctatcgcttacttggtaatcgactcaaatatcatatcatacatgccttgtttttttttggaaaatgttgatttatcgtaaacgggttcgtacacccttggcaacggactatttgtgtgctctgtaattggttcaaattgttggcaccggacttattgtgtttataatatgtattctgtaaaacattgtggttgaacaggccaaagagaagaaaaatgattacgctagtatattatttaggtacgactaatcggactaatacccaactgacaatatttatgttttagcatattatacttattgaag
gi|4 : acggtgcggaatggggacggactatctgtgggttttttgcgcgtttccagactaagcgtgatcagcaacggacttttcggggtttaaaaattggattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-C--C-C-ACAATTAAC-CTTGGAA-AAAGATGGA-AGTCCATTGTTGTACCAAAGCTCTCTGTTCACCGCTT----TCCTTTTTAGAAAAT---AACCCAA---------ATCGAATTTATTCTTAT--TCACTG----GACTGT-AT--TTAGGCCCGTTAGT-------TGCAAA
gi|4 : TGTCTTGGTT---TTTTTTATTTGGAAAATGTTGAATTTATC-----CG----TGTTAA-CCTTGGCCAACGG-CAT--TTGGTGTGCCTCCCC-CTG-TAAAAT--TGTTCCAAAATTTT-GG---CGGAACCCTTATTGTG-----T--TT-----AC-------A-------TTGTtcacttaaccaagatattggtcacgcaagtcttctatctgactgtacttctagtaaggtctacttcaacgggcaagactcatggagccatgggaacatgccgttgtcttggttttttttatttggaaaatgttgaatttatccgtgttaaccttggccaacggcatttggtgtgcctccccctgtaaaattgttccaaaattttggcggaacccttattgtgtttacattgt
gi|5 : cccacaattaaccttggaaaaagatggaagtccattgttgtaccaaagctctctgttcaccgctttcctttttagaaaataacccaaatcgaatttattcttattcactggactgtatttaggcccgttagttgcaaatcacttaaccaagatattggtcacgcaagtcttctatctgactgtacttctagtaaggtctacttcaacgggcaagactcatggagccatgggaacatgccgtTGGGGACGTACTTTCC---GTG--------TTATTT--T---------GCGCG---AC---AGACTAAGCGTGCT-CAGCAACG-GACTTTTCGTGGTGT-AGA---ATTCTGAC---CGGAGTAATA--AAA-TTAAT-TCGGGAGAA--AGGAAGAAGTCG--TTATTC---TTTTTTCAAAACATTTTCG--AGGAATAA-CGTAA--TATCCGATG--GGGTAGTATTT-ATAACTACAT-TTATCAAATATGGTCCACATTCGT---CAAAA-CA-T--CAC-ACA--CAAA-TCTGAAACAAAGATCGA-A-ACCAT--------CAAA------TGC-TGTCATGT----T--TTTCTAGAAA-T---A-C-------------ATCGAAT--TTTCTTAT--TCACTG----A-CTGT-AT--TT----TTGTT-GT-------AACAAAA-TGTAATGTATA-----------------ACTTTGCAATCG------------------A----C
gi|6 : TGTCTTGGTT---TTTTTTATTTGGAAAATGTTGAATTTATC-----CG----TGTTAA-CCTTGGCCAACGG-CAT--TTGGTGTGCCTCCCC-CTG-TAAAAT--TGTTCCAAAATTTT-GG---CGGAACCCTTATTGTG-----T--TT-----AC-------A-------TTGTttaaagatcaaatc
gi|6 : ATATGTATTTTG-------TATTG--CA-TTTAGAAAT-------CCAAACCGAAAGAGACTGAAGAAAAAACATTGTGGCCACCAGCGCCGGTTGAACAGGCC-AATAAAATCAAAGAAG-AAAAAgccgaacacgggtgctttcggaaacgcacgacctgcccatcacagggcgagaaagctaatatgtattttgtattgcatttagaaatccaaaccgaaagagactgaagaaaaaacattgtggccaccagcgccggttgaacaggccaataaaatcaaagaagaaaaag
gi|7 : tgtcttggttttttttatttggaaaatgttgaatttatccgtgttaaccttggccaacggcatttggtgtgcctccccctgtaaaattgttccaaaattttggcggaacccttattgtgtttacattgtgccgaacacgggtgctttcggaaacgcacgacctgcccatcacagggcgagaaagctaTGTGTGCT------CTG-T--AAT--TGGTTCAAATCTTT-GATGCTGGG---CTGATTGGG-----TAATTCCTGCACTGGACTTA-------TTGTGTGTA-CATG-------TATTG--CA-TTTAG-AAT-------C--------AAGAGA---AAG--AAAACATTGT-------------GGTTGAAAAGGCC-AA-------GGAGAAG-AAACAATGA-CAAT-TACGATAGTACA----TGTATATTACATGTAGGTATAC-GAT--TATTCGGACTAAT-----------AATAT-----------------GTACCTATTGAAGCCTTAATAATAGCGATAAATACATATA-TACATg
gi|8 : agattcatttactgtacTGGGGACGGACTTTCC---GTG--------TTATTT--T---------ACGCGTTTCA---AAAGTAAGCGTGTT-CAGCAACG-GACTTT-----------------ATCTGAT---CAGAAAAATA--ATA-TGGAC-TATAGAGAA--AGAAAGAAGTCG--TAAGTC---TTTTT-CAAATCATTTACA--CGGAATAT-CGTGA--TATCCCATG--AGATAGCATTC-ATAACTAAAT-TTACCAAATTTAGCTCACATTCTT---CAAAA-AATC--C-T-ACA--CAAA-CTTGAAA-AAAAATCGA-A-TCCGT--------CAAA------TGC-CGTTATGT----T--TTTCTAG
gi|9 : ACGGTGT-GGAATGGGGACGGACTATCC---GTGCTTTTTTTTTTTTT--TT--------GCGCGTTTCC---AGACTAAGCGTGCT-CAGCAATG-GACTTTTCGGGGTTT-AAA---AATCGGAC---CAGAGACACA--TTA-TGGAC-CCTACAGAA--ATAAATAAGTCG--TAAGTC---TTTTT-CAAATCATTTTCA--CGGAATAT-CGTAA--TATCCCATG--AGATAGTATTT-ATAACTAAAT-GTACCAAATTTGGCCAACATTCTT---