lowQualScore : 11111111111111111111111111111111111111 11111111111 1111111111111
lowQualScore : 1 222 1 99999999999999999999999999999999999999 11 1 11111 11 2 11 11111 1 4 11111111111 11111 333333 111111 33 0000000000000 22222222222222222222 11 11 11 111 11 111 2222222 22222 7777777777777777777 111111 222222222222222 111111
lowQualScore : 0 111 0 44444444444444444444444444444444444444 6 33 2 6 6 2 6 6 3 77777 44 0 99 3 888 6 6 44 6 666 99 2 99999 6 0 44444444444 3 0 8 8 0 33333 8 8 5 6 888 6 5 999 1 5 111111 5 5 222222 5 22 5 5 8888888888888 1 44444444444444444444 4 4 4 3 11 55 3 3 55 11 3 3 00 7 3 333 3 3 3 4 1 4 4 4 111 4 4 8 0 11 111 66 4 9999999 1 11111 777 8 4 4 4 9999999 4 6666666666666666666 111111 55 333333333333333 222222 4 99 4 55 4 4 4
lowQualScore : . ... . ...................................... . .. . . . . . . . ..... .. . .. . ... . . .. . ... .. . ..... . . ........... . . . . . ..... . . . . ... . . ... . . ...... . . ...... . .. . . ............. . .................... . . . . .. .. . . .. .. . . .. . . ... . . . . . . . . ... . . . . .. ... .. . ....... . ..... ... . . . . ....... . ................... ...... .. ............... ...... . .. . .. . . .
lowQualScore : 0 000 0 88888888888888888888888888888888888888 7 33 5 7 7 8 7 7 3 55555 22 7 22 2 777 7 7 00 7 888 22 5 33333 0 0 00000000000 2 8 0 0 8 44444 0 0 0 7 333 2 7 333 4 7 444444 7 0 333333 7 33 7 7 4444444444444 4 66666666666666666666 0 0 0 0 00 00 6 6 00 88 6 6 00 3 6 777 6 6 3 0 9 0 0 0 000 0 0 0 7 00 444 11 7 6666666 9 33333 999 9 4 0 0 9999999 0 5555555555555555555 555555 55 111111111111111 444444 0 55 0 55 0 0 0
consensus : TAACAAG-CA-T-TGA-TTTTA-A--TA----TTA-----------TTATA--C--T-TA-ATGTAC-GTACTGCAACTAT-TA-ATTTCCA-CTT-G-AA---T-TTTG-AAAGT-CATC--GTGG-T-ACAG-G-CATGTA-CACG-T-AGA--ACCA--CG-CCATGGTGCTCTT-CTCTCTCTCTTTC-----CTGTTTTTTTAACTATA-T-GAACATTTTCTGT--TATTT-A-CACGTGTATTT-AC-A-CNTTGGA-TGA--CAGATATC-C--AC-CCACTA-CATANA----TT-TTT-AGA-TGAATTGAATG-ACTG------TGTAGCATTGAAATAAA-G---TTTATA-AA-TC---TCTG-C-GC-GTCG--T--CA-AA-GC--GTCGGG-TTTC-GCGC-GGTA--TCCA-TGTT-CATTT-GTA-CG-ACTTCATGC-ACCGAAGAG-TTCCACT-ACGACTTACG-ACAAG---ACAA-CG-TTACG-ACC--TACGA-TT--ACGAT--G--GGTTTTGTAAAAC-GGTCCT--ACGAT-ATG-TCGT-AAG-TTC----T--TC-AATTCTA--AC---T--------TACG------A--TTTAA----------G----ACTT----ACGA-C--TTTT-TG--T-AA-AA-CGCTGC
Reference ( gi|2 ) : TAACAAG-CA-T-TGA-TTTTAAA-ATA----TTA-----------TTATAAGCCCT-TA-ATGTAC-ATACTGCAACTAT-TA-ATTTTCA-CTT-G-AA---T-TTTG-GAAGTACATT--GTGG-T-ACAG-G-CATGTA-CACG-T-AGA--ACCA--CA-CCAT-GTGCTCTTGCTCTCTCTCTCCCGACCTTTTTTTTTTTAACTATA-T-GGACATTTTCTGT--TATTT-A-CACGTGTATTT-AC-A-CTTTGGA-TGA--CAGATATC-C--GC-TCACTA-TATATA----TT-TTCTAGA-TGAATTGAATG-ACTGTACGAGTGTAGCATTGAAATAAA-G---TTTATA-AA-TC---TCTG-C-GC-GTTG--T--CA-AA-GC--GTCGGG-TTTC-GCGC-GGTA--TCCA-TGTT-CATTT-GCA-CG-ACTTTATGC-ACTAAAGAG-TTCCACT-ACGACTTACG-ACAAG---ACAA-CG-TTACG-ACC--TACGA-TT--ACGAT--G--TGTTTTGTAAAAC-GGTCCT--ACGAT-ATG-TCGT-AAG-TTC----T--TC-AATT----------T--------TACG------A--TTTAA----------G----ACTT----ATGA-C--TTTT-TG--T-AA-AA-CGCTGC
gi|3 : TAACAAG-CAAT-TGA-TTTTA----------------------------------T-TA-ATGTAC-GTA--------AT-TA-ATTTCCA-CTT-G-AA---T-TTTG-AAAGTGCATT--GTGG-T-ACAG-G-CATGTA--ACG-T-AGA--ACCA--GG-CCAT-GTGCTC
gi|13 : ccgTAACAAGTCA-TATGA-TCT---A-TTA----TTA-----------ATAT------T-GA-ACGTAC----CTGCAATTAT-TA-ATTTCCA-CTT-GGAA---T-TTTG-AAAGTCCATC--GTGT-A-ACAG-G-CATGTA-CACG-TAAGA--AACA--CAGCCAT-Gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaactataatgaacattttctgttatttacacgtgtatttacacgtactaacataaattttagatgaattgaatgactgtaagcattgaaataaagtttttaaaatctctacgcgtcgtccaagcgtcgggtttcgcgctgtatccactgttcgtttgtacgacttcagcaccaaagagttccactacgacttacgacaaggcaacgttacgactacgattacgataggttttgtaaacggtcctacgatatgtcgtaagttcttaattctatgacttacgatttaagacttacgctttttgtaaaacgctg
gi|1 : cacgAAAAAG-CA-TCTGAATTTTAAATATAGAAATTAGCGAACCCTTCTTGTAGGCTCGGTACAAGTAC-AAGCTTCAACTAT-GAGAATTACA-CTTTG-AAAATT-TTTG-AAAGT-CATT--GGGG-T-ACAG-GGCATGTAACAAG-T-AGA--ACCA---G-CCGT-GTGCTCTT-CTCTCTCTCTTTC-----CTGTTTTTTTAACTA-A-T-GAA-ATTTCTTGT--TATTTCA-CAC-TGTTTTA-ACTATCTTTGGA-TGAACCCGATATC-C--ACGCCACAA-TA-A-A----TT-TTA-AGA-TGAATTGAATGCACTG-------ATAGCAT-GAAATAAA-T---TTTATA-AA-TC---TCTA-C-GCCGTCG--T--CC-CA-GC--GTCGG--TTTCAGCGC-TGTAAATCAC-TGT--CATTTTGTAACGGACTTCATGT-AC-AAAGAGGTTCCACT-ACGACTTACG-ACAAGGGCATAC-CG-TTACGCACC--ATCGA-CT--ACGATAAG---GTTTTGTAAA-C-GGTCCT--ACGATTATG-TCGTTAAGCTTC----T--CA-AATTCTAACGAACCT--------TACG------AAGTTTAA----------AGCAAACTTCGACGCGA-CGTTTTT-TG--T-AATAATCGCTGC
gi|14 : CAAG-CA-T-TGA-TTTT-------------------------------------TA-ATGTAC-GTACTGCAATTAT-TA-ATTTCCA-CTT-G-AA-----GTTG-AAAGT-CATC--GTGGTT-ACAGCG-CATGT--CACGTT-AGA--A-CA--CG-CCATGGTGCcc
gi|15 : gA----TCA-----------TTAAACTCCAT-TA-AT-TACCATACTGCAACTAT-TA-ATTTTCACCCT-GTAA---TCTTTG-TAAGTTCATT--G-GC-T-ACA--A-TGTGTA-CAGG-C-AAATCACCAGTCA-CCA
gi|9 : -ATGTAC-GTACTG-AACTCTGTA-ATTTTCA-ATT-G-AA---T-TTTGAAAAGTGCATTGGGTGG-TAACAG-G-CATGT--CA-G-T-AG----CC---CG-CCATGGTGCACT
gi|5 : ttcgtaacagattgcttttgattTTTTTTTA-CTATA-T-GGAC-TTTTCTGT--TCTTT-ATCACGTGCATTT-AA-C-CTTTGGA-TG---CAGATATC-C---C-CCACTA-CATAAA----TT-TT---GA-T--ATTGAATG-AC--------TGTAGCATTGAAATAAAGG---TTTATA-AA-T----TCTA-CAGC-GTCG--TCGCA-AT-GCTGGTCGGGTTTTC-GCGCTGTTA--TCCATTGTTATGTTT-GTA-CG-ACTTCATGC--CCAAAGA--TTTCACT-ACGACTTACG--CAAG---GCAAGCG--TACG------TAC-A-TTAAACGTT--GGAGGTTTTGT--AACTGGTCC---ACGAT-ATG-TCTT-AAG-TTC----TTATCAAATTCTAGCAC---T--------TACG------A--TTTAA----------G----ACTT----ACGA-CT-TTTT-TG--T-AA-GA-AGCTGcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttctt
gi|6 : TTTTAATTATA-T-GGACATTTTCTGT--G---T-A-CA--TGTATTT-GC-A-CATTGGA-TGA--CAGATATC-C--GC-CCACTA-TATATACATGTA-TTTTAGA-TGAATTGAATG-ACTGTA--------ACATTGAAAT-------------------C---TCTG-C-TC-GTCG--T--CA-AA-GC--GTCAGG-TTTC-ACGC-GGTA--TCCA-TGTT-CATTT-GCA-CT-ATTTCATGC-ACTAAAGAG-TTCCACT-ACGACTTACG-ACAAG---ACAA-CA-TTACG-ACC--TACGA-TT--ACGAT--G--GGTTTTGTAAAAC-TGTCCT--ACGAT-ATG-TCGT-AAG-TTC----T--TC-AATTTTATGAC---T--------TACG------A--TTTAA----------G----ACTT----ACAA-C--TTTT-TG--T-AA-AA-CGCTGC
gi|3 : TTAACTATAAT-GAACATTTTCTGT--TATTT-A-CACGTGTATTT-AC-A-CGT---------------------------ACTAACATAAA----TT-TT--AGA-TGAATTGAATG-ACTGTA-------AGCATTGAAATAAA-G---TTTTTA-AAATC---TCTA-C-GC-GTCG--T--CC-AA-GC--GTCGGG-TTTC-GCGC-TGTA--TCCACTGTT-CGTTT-GTA-CG-ACTTCA-GC-ACCAAAGAG-TTCCACT-ACGACTTACG-ACAAG---GCAA-CG-TTACG-A-C--TACGA-TT--ACGAT--A--GGTTTTGT-AAAC-GGTCCT--ACGAT-ATG-TCGT-AAG-TTC----T--T--AATTCTATGAC---T--------TACG------A--TTTAA----------G----ACTT----ACG--C--TTTT-TG--T-AA-AA-CGCTGc
gi|4 : ccgtaacaagcaattgattttattaatgtacgtaattaatttccacttgaattttgaaagtgcattgtggtacaggcatgtaacgtagaaccaggccatgtgctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTATA-TCGAACATTTTCTGTATTAATT-A-CACGT-TATTT-AC-A-TCTTTGA-TTA--CAGA-ATCTC--ACGTTACTA-CATAAA----TT-TT--AAACTGAATTGAAT----------AGTGTAGCATTGAAATAAA-G---TT-ATA-AA-TCGCATCTA-C-GC-GTTG--T--CCCAA-GC--GTCGGG-TTCC-GCGC-TGTAAATCCA-TGTT-CATTT-GTA-CG-ACTTCATGC-ACCAAAGAG-TTCCAC--ACGACTTACG-ACATGC--GCAA-CGTTTACGAACC--TACG---T--A----------GGTTTGTAAAAC-GGTCCTCAACGCT-ATGTTCGT-AAG-T------T--TC-AATT----------C--------TACG------A--CTTAACAGATTTAAGG----ACTT----ACGA-C--TTTC-TG--TAAA-AA-CGCTGC
gi|7 : tttgattTATTTCAC-A-CAATAGAATGA--AGGATATC-CTAAC-CCACTA-TA-ATA----TTATTTCACG-TGAATTGA-TG-ACT-------TATA-CATTGAA-TA---GCCTTTTATATAA-TC---GCTGTC-GC-GTCG--T--CA-AAAGC--GTCGG--TTTC-GC-C-GGTA--TCCA-T-CT-CATTT-GCA-CG-ACTAT-TGCTACTAAAG-T-TTCCCCTGAC-ACTTACGGATAAG---ACAA-C--TTAC--ACC--TACA---T--A-GAT--G--TGTTTT-TAAA-C---TCCT--ACGATTATG-TCGT-AAG-TTTCTGTT--TC-AATT----------T--------TACGACTTATA--TTTAA----------G----AC-T----ACGA-C--TTTTATGGTT-AA-AA-CGCTGC
gi|12 : tcTTGGA-TGA--CAGCTCCC-CT-AC-TTACTA-TTTATA----TT-GTTTAGA-AGGATGGAATG-AC--------------ATTGAAATAAA---------TA-A--------CTG-C-GT-GTCT--T--TC-AA-GC--ATCGG--TTTC-ATGC-GGCA--TTTA-TGTT-CATTT-GAA-CA-ACCTCATGC-ATTGAGAAT-TTCCTCT-ATGACATATG-ACAA----ATGA-AG-TTACG-ACC--TACca
gi|10 : ta---TTTG-C-AC-GTCAAAT--TA-AA-GC--GTCGGG-TTT--GCGT-GGTA--TCCA-TATT-CATTT--TA-AA-ACTTCATGC-ACTGAAGAG-TTCCACT-ACGACTTACT-ACAAA---ATAA-CG-TTACG-ATCTATACGA-TT--ATGAA--G--GGTTTTGTAAA-----------------ATG-CCGT-AAG-GTA----T--TC-AATT----------T--------TACG------A--TTTAA----------G----ACTT----AGAA-C--GTTT-TG--T-AA-AA-TGCTGca
gi|11 : tcg---TTTG-C-AC-GTCAAAT--TA-AA-GC--GTCGG---TTT-GCGT-GGTA--TCCA-TATT-CATTT--TA-AA-ACTTCATGC-ACTGAAGAG-T-CCACT-ACGACTTACT-ACAAA---ATAA-CG-TTACG-ATCTATACGA--T--ATGAA--G--GGTTTTGTAAA-----------------ATG-CCGT-AAG-GTA-------TC-AATT----------T--------TACG------A---TTAA----------G----ACTT----A-GA-A--CGTT-TG--T-AA-AA-TGCTG
gi|8 : tcgCTG-C-GC-GTTG--G--CA-AA-GC--AACTGG-TTTA-GCAT-GGTA--TCCA-TGTT-CATTT-GCA-CA-TCTTCATGT-ACCAAAGAG-TTCCACT-ATGACTTGCA-ACAAG---GCGG-TG-TTAAG-ACC--TAAGACCT--ACGA--------TTACGTACAAA-AATCCT--ACGAT-ATG-TCGT-AAG-TTC----T--TC--ATT----------TCTACAACATACG------A--TTTAA----------G----ATTT----AAGATT--TTTT-TG--T-AA-AG-CACTGC
gi|17 : --CA-AA-GC--GTCGGG-TTTC-GCGC-GGTA--TCCA-TGCT-CATTT-GCA-CG-ACTTTAT
gi|16 : -AAG-TTC----T--TC-AATTCCACGAC---T--------TACG------A--TTTAAAA--------G----ACTT----ACGA-C--TTTT-TG--T-AA-AA-
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 1 111 00000000000000000000000000 1 11111 2 11 2 55555 11111 11111111 11 333333333 1111 11 111 1111 4444444444444
lowQualScore : 0 111 55555555555555555555555555 99 0 5 5 0 5 1 5 33333 5 5 2 999 1 666 888 00 4 5 5 3 66 6 0 00000 2 0 6 6 99 3 6 6 2 5 555 1 5 777 0 5 88888 99 1 55555555 66 5 0 222222222 1 0 6666 33 5 5 0 777 3 3 3 00 6666 3 44 2 444 77 44 3 3 3 3 3 3 3 3 1 3 3 3 000 3 3 7 55 55 44 666 55 55 0 1111 666 4 4 4 4 3 7777 55 3 4444444444444 3 3 55 7777 88 7777 3 88 3 55 3 3 3
lowQualScore : . ... .......................... .. . . . . . . . ..... . . . ... . ... ... .. . . . . .. . . ..... . . . . .. . . . . . ... . . ... . . ..... .. . ........ .. . . ......... . . .... .. . . . ... . . . .. .... . .. . ... .. .. . . . . . . . . . . . . ... . . . .. .. .. ... .. .. . .... ... . . . . . .... .. . ............. . . .. .... .. .... . .. . .. . . .
lowQualScore : 0 000 11111111111111111111111111 77 7 7 7 4 7 4 7 77777 7 7 9 333 4 111 666 77 3 7 7 0 44 7 0 00000 5 8 7 7 22 2 7 7 5 7 999 0 0 000 1 0 99999 22 0 44444444 66 0 1 222222222 4 1 2222 44 0 0 1 000 6 6 6 00 9999 3 66 5 222 99 66 3 3 3 3 3 3 3 6 6 6 6 6 000 6 6 3 00 00 88 222 11 55 8 3333 222 0 0 0 0 6 7777 00 6 6666666666666 6 6 00 7777 66 7777 6 66 6 00 6 6 6
consensus : TAACAAG-CA-T-TGATTTTA----ATTATTA-TA----CT----TAATGTAC-GTACTGCAACTAT-TA-ATTTCCA-CTT-G-AA---T-TTTG-AAAG-T-CATC--GTGG-T-ACA-G-GCATGT-ACACG-T-AGAACCAC-GCCATGGTGCTCTTGCTCTCTCTCTCCCGACCTCTNTTTTTTTAACTATA-T-GGACATTTTCTGT--TATTT-A-CACGTGTATTT-AC-A-CNTTGGA-TGA--CAGATATC-C--GC-CCACTA-CATANAT-----T--TT-NAGATGAATTGAATG-ACTGT------ATAGCATTGAAATAAAG---TTTAT-A-AATC---TCTG-C-G-CGTCG--TC--A-AA-GC--GTCGGGTTT-C-GCGCGGT--A--TCCA-T-GTT-CA-TTTGC-AC-GACT-TCATGC-ACCGAAGA-GTTCCACT-ACGACTTACG-ACAAG---ACAA-CG-TTACG-ACC--TA--CGA-TTA--CGAT-GG--GTTTTGTAAAAC-GGTCCT--ACGA-T-ATG-TCG-TAAG-TT----CTT--CAA-TTCT--A-GA-----CTT-AC-GA--TTTA----A--GACTT----ACGA-C--TTTT-TG--T-AA-AA-CGCTGC
Reference ( family-6334 ) : TAACAAG-CA-T-TGATTTTAA--TATTATTA-TA----CT----TAATGTAC-GTACTGCAACTAT-TA-ATTTCCA-CTT-G-AA---T-TTTG-AAAG-T-CATC--GTGG-T-ACA-G-GCATGT-ACACG-T-AGAACCAC-GCCATGGTGCTCTT-CTCTCTCTCTTTC-----CTGTTTTTTTAACTATA-T-GAACATTTTCTGT--TATTT-A-CACGTGTATTT-AC-A-CNTTGGA-TGA--CAGATATC-C--AC-CCACTA-CATANAT-----T--TT-TAGATGAATTGAATG-ACTGT------GTAGCATTGAAATAAAG---TTTAT-A-AATC---TCTG-C-G-CGTCG--TC--A-AA-GC--GTCGGGTTT-C-GCGCGGT--A--TCCA-T-GTT-CA-TTTGT-AC-GACT-TCATGC-ACCGAAGA-GTTCCACT-ACGACTTACG-ACAAG---ACAA-CG-TTACG-ACC--TA--CGA-TTA--CGAT-GG--GTTTTGTAAAAC-GGTCCT--ACGA-T-ATG-TCG-TAAG-TT----CTT--CAA-TTCT--A--A-----CTT-AC-GA--TTTA----A--GACTT----ACGA-C--TTTT-TG--T-AA-AA-CGCTGC
gi|1 : GTAC-AAGCTTCAACTAT-GAGAATTACA-CTTTG-AAAATT-TTTG-AAAG-T-CATT--GGGG-T-ACAGG-GCATGTAACAAG-T-AGAACCA--GCCGT-GTGCTCTT-CTCTCTCTCTTTC-----CTGTTTTTTTAACTA-A-T-GAA-ATTTCTTGT--TATTTCA-CAC-TGTTTTA-ACTATCTTTGGA-TGAACCCGATATC-C--ACGCCAC-A--ATAAAT-----T--TT-AAGATGAATTGAATGCACTG-------ATAGCA-TGAAATAAAT---TTTAT-A-AATC---TCTA-C-GCCGTCG--TC--C-CA-GC--GTC-GGTTT-CAGCGCTGTAAA--TCAC-T-G-T-CATTTTGTAACGGACT-TCATGT-A-CAAAGAGGTTCCACT-ACGACTTACG-ACAAGGGCATAC-CG-TTACGCACC--AT--CGA-CTA--CGATAAG--GTTTTGT-AAAC-GGTCCT--ACGATT-ATG-TCGTTAAGCTT----CTC--AAA-TTCT--A--ACGAACCTT-AC-GAAGTTTAAAGCA--AACTTCGACGCGA-CGTTTTT-TG--T-AATAATCGCTGC
gi|10 : aaaaagcatctgaattttaaatatagaaattagcgaacccttcttgtaggctcggtacaa---TTTG-C-A-CGTCAAATT--A-AA-GC--GTCGGGTTT---GCGTGGT--A--TCCA-T-ATT-CA-TTT-T-AA-AACT-TCATGC-ACTGAAGA-GTTCCACT-ACGACTTACT-ACAAA---ATAA-CG-TTACG-ATCTATA--CGA-TTA--TGAA-GG--GTTTTGTAAA------------------ATG-CCG-TAAG-GT----ATT--CAA-TT--------------TT-AC-GA--TTTA----A--GACTT----AGAA-C--GTTT-TG--T-AA-AA-TGCTGcc
gi|11 : tcg---TTTG-C-A-CGTCAAATT--A-AA-GC--GTCGG--TT-T-GCGTGGT--A--TCCA-T-ATT-CA-TTT-T-AA-AACT-TCATGC-ACTGAAGA-GT-CCACT-ACGACTTACT-ACAAA---ATAA-CG-TTACG-ATC--TATACGA-T-A--TGAA-GG--GTTTTGTAAAA------------------TG-CCG-TAAG-GT----AT---CAA-TT--------------TT-AC-GA--TT-A----A--GACTT----AGAA-C--GTTT--G--T-AA-AA-TGCTG
gi|12 : tcgTTGGA-TGA--CAGCTCCC-CT-AC-TTACTA-TTTATAT-----TG-TT-TAGAAGGATGGAATG-AC--------------ATTGAAATAAA--------T-A-A-------CTG-C-G-TGTCT--TT--C-AA-GC--ATCGG-TTT-C-ATGCGGC--A--TTTA-T-GTT-CA-TTTGA-AC-AACC-TCATGC-ATTGAGAA-TTTCCTCT-ATGACATATG-ACAA----ATGA-AG-TTACG-ACC--TA--C
gi|13 : taTAACAAGTCA-TATGATCT------ATTATTAATA----TT----GAACGTAC----CTGCAATTAT-TA-ATTTCCA-CTTGG-AA---T-TTTG-AAAG-TCCATC--GTGT-A-ACA-G-GCATGT-ACACG-TAAGAAACACAGCCATGca
gi|14 : cacgCAAG-CA-T-TGATTTT-------------------------TAATGTAC-GTACTGCAATTAT-TA-ATTTCCA-CTT-G-AA-----GTTG-AAAG-T-CATC--GTGGTT-ACA-GCGCATGT--CACGTT-AGAA-CAC-GCCATGGTGC
gi|15 : gATCATTA-AA----CTCCATTAAT-TACCATACTGCAACTAT-TA-ATTTTCACCCT-GTAA---TCTTTG-TAAGTT-CATT--G-GC-T-ACA---ATGTGT-ACAGG-C-A-AATCAC-
gi|16 : AAG-TT----CTT--CAA-TTCC--ACGA-----CTT-AC-GA--TTTA----AAAGACTT----ACGA-C--TTTT-TG--T-AA-AA-cagtcacca
gi|17 : cC--A-AA-GC--GTCGGGTTT-C-GCGCGGT--A--TCCA-T-GCT-CA-TTTGC-AC-GACT-TTAT
gi|2 : TAACAAG-CA-T-TGATTTTAAAATATTATTA-TAAGCCCT----TAATGTAC-ATACTGCAACTAT-TA-ATTTTCA-CTT-G-AA---T-TTTG-GAAG-TACATT--GTGG-T-ACA-G-GCATGT-ACACG-T-AGAACCAC-ACCATG-TGCTCTTGCTCTCTCTCTCCCGACCTTTTTTTTTTTAACTATA-T-GGACATTTTCTGT--TATTT-A-CACGTGTATTT-AC-A-CTTTGGA-TGA--CAGATATC-C--GC-TCACTA-TATATAT-----T--TTCTAGATGAATTGAATG-ACTGTACGAGTGTAGCATTGAAATAAAG---TTTAT-A-AATC---TCTG-C-G-CGTTG--TC--A-AA-GC--GTCGGGTTT-C-GCGCGGT--A--TCCA-T-GTT-CA-TTTGC-AC-GACT-TTATGC-ACTAAAGA-GTTCCACT-ACGACTTACG-ACAAG---ACAA-CG-TTACG-ACC--TA--CGA-TTA--CGAT-GT--GTTTTGTAAAAC-GGTCCT--ACGA-T-ATG-TCG-TAAG-TT----CTT--CAA-TT--------------TT-AC-GA--TTTA----A--GACTT----ATGA-C--TTTT-TG--T-AA-AA-CGCTGC
gi|3 : TAACAAG-CAAT-TGATTTTA-------------------T----TAATGTAC-GTA--------AT-TA-ATTTCCA-CTT-G-AA---T-TTTG-AAAG-TGCATT--GTGG-T-ACA-G-GCATGT-A-ACG-T-AGAACCAG-GCCAT-GTGCTC
gi|3 : ccgTTAACTATAAT-GAACATTTTCTGT--TATTT-A-CACGTGTATTT-AC-A-CGT---------------------------ACTAACATAAAT-----T--TT--AGATGAATTGAATG-ACTGT------A-AGCATTGAAATAAAG---TTTTTAA-AATC---TCTA-C-G-CGTCG--TC--C-AA-GC--GTCGGGTTT-C-GCGCTGT--A--TCCACT-GTT-CG-TTTGT-AC-GACT-TCA-GC-ACCAAAGA-GTTCCACT-ACGACTTACG-ACAAG---GCAA-CG-TTACG-A-C--TA--CGA-TTA--CGAT-AG--GTTTTGT-AAAC-GGTCCT--ACGA-T-ATG-TCG-TAAG-TT----CTT---AA-TTCT--ATGA-----CTT-AC-GA--TTTA----A--GACTT----ACG--C--TTTT-TG--T-AA-AA-CGCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaactataatgaacattttctgttatttacacgtgtatttacacgtactaacataaattttagatgaattgaatgactgtaagcattgaaataaagtttttaaaatctctacgcgtcgtccaagcgtcgggtttcgcgctgtatccactgttcgtttgtacgacttcagcaccaaagagttccactacgacttacgacaaggcaacgttacgactacgattacgataggttttgtaaacggtcctacgatatgtcgtaagttcttaattctatgacttacgatttaagacttacgctttttgtaaaacgctg
gi|4 : ccgtaacaagcaattgattttattaatgtacgtaattaatttccacttgaattttgaaagtgcattgtggtacaggcatgtaacgtagaaccaggccatgtgctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTATA-TCGAACATTTTCTGTATTAATT-A-CACGT-TATTT-AC-A-TCTTTGA-TTA--CAGA-ATCTC--ACGTTACTA-CATAAAT-----T--TT-AAACTGAATTGAATA----GT------GTAGCATTGAAATAAAG---TT-AT-A-AATCGCATCTA-C-G-CGTTG--TC--CCAA-GC--GTCGGGTTC-C-GCGCTGT--AAATCCA-T-GTT-CA-TTTGT-AC-GACT-TCATGC-ACCAAAGA-GTTCCAC--ACGACTTACG-ACATGC--GCAA-CGTTTACGAACC--TA--CG----------T-AG--G-TTTGTAAAAC-GGTCCTCAACGC-T-ATGTTCG-TAAG-T------TT--CAA-TTCT--ACGA-----CTTAACAGA--TTTA----AG-GACTT----ACGA-C--TTTC-TG--TAAA-AA-CGCTGC
gi|5 : tttgattTTTTTTTA-CTATA-T-GGAC-TTTTCTGT--TCTTT-ATCACGTGCATTT-AA-C-CTTTGGA-TG---CAGATATC-C---C-CCACTA-CATAAAT-----T--TT---GAT--ATTGAATG-ACTGT--------AGCATTGAAATAAAGG--TTTAT-A-AAT----TCTA-CAG-CGTCG--TCGCA-AT-GCTGGTCGGGTTTTC-GCGCTGTT-A--TCCA-TTGTTATG-TTTGT-AC-GACT-TCATGC--CCAAAGA--TTTCACT-ACGACTTACG--CAAG---GCAAGCG-T-ACG------TA--C-A-TTAAACGTT-GGAGGTTTTGTAA--CTGGTCC---ACGA-T-ATG-TCT-TAAG-TT----CTTATCAAATTCT--AGCA-----CTT-AC-GA--TTTA----A--GACTT----ACGA-CT-TTTT-TG--T-AA-GA-AGCTG
gi|6 : TTTTAATTATA-T-GGACATTTTCTGT--G---T-A-CA--TGTATTT-GC-A-CATTGGA-TGA--CAGATATC-C--GC-CCACTA-TATATACATGTAT--TT-TAGATGAATTGAATG-ACTGT--------AACATTGAAAT------------------C---TCTG-C-T-CGTCG--TC--A-AA-GC--GTCAGGTTT-C-ACGCGGT--A--TCCA-T-GTT-CA-TTTGC-AC-TATT-TCATGC-ACTAAAGA-GTTCCACT-ACGACTTACG-ACAAG---ACAA-CA-TTACG-ACC--TA--CGA-TTA--CGAT-GG--GTTTTGTAAAAC-TGTCCT--ACGA-T-ATG-TCG-TAAG-TT----CTT--CAA-TTTT--ATGA-----CTT-AC-GA--TTTA----A--GACTT----ACAA-C--TTTT-TG--T-AA-AA-CGCTGC
gi|7 : TATTTCAC-A-CAATAGAATGA--AGGATATC-CTAAC-CCACTA-TA-ATAT-----TATTT-CACGTGAATTGA-TG-ACT-T------ATA-CATTGAA-TA--GCCTTTTAT-ATAATC---GCTGTC-G-CGTCG--TC--A-AAAGC--GTCGG-TTT-C-GC-CGGT--A--TCCA-T--CT-CA-TTTGC-AC-GACTAT--TGCTACTAAAG--TTTCCCCTGAC-ACTTACGGATAAG---ACAA-C--TTAC--ACC--TA--CA---TA---GAT-GT--GTTTT-TAAA-C---TCCT--ACGA-TTATG-TCG-TAAG-TTTCTGTTT--CAA-TTTT--ACGA-----CTT-AT--A--TTTA----A--GAC-T----ACGA-C--TTTTATGGTT-AA-AA-CGCTGCc
gi|8 : tcCTG-C-G-CGTTG--GC--A-AA-GC--AACTGGTTT-A-GCATGGT--A--TCCA-T-GTT-CA-TTTGC-AC-ATCT-TCATGT-ACCAAAGA-GTTCCACT-ATGACTTGCA-ACAAG---GCGG-TG-TTAAG-ACC--TA--AGACCTA--CGA-------TTACGTACAAA-AATCCT--ACGA-T-ATG-TCG-TAAG-TT----CTT--CAT-TTCTACA--A-----CAT-AC-GA--TTTA----A--GATTT----AAGATT--TTTT-TG--T-AA-AG-CACTGCca
gi|9 : ATGTAC-GTACTG-AACTCTGTA-ATTTTCA-ATT-G-AA---T-TTTGAAAAG-TGCATTGGGTGG-TAACA-G-GCATGT--CA-G-T-AG--CC-C-GCCATGGTGCACT
Alignments
lowQualScore : 88888888888888888888888888 1 11111 2 11 1 1 22222 22222 11111111 11 222222222 1111 11 111 11 111 3333333333
lowQualScore : 8 8 8 44444444444444444444444444 99 0 5 5 0 5 1 5 33333 5 5 2 999 1 666 5 5 00 4 5 5 3 66 0 5 66666 1 0 6 6 99 3 6 6 2 5 555 1 5 777 0 5 22222 99 1 55555555 55 5 0 0 888888888 0 6666 33 5 5 0 777 3 3 3 00 6666 3 44 6 444 3 99 3 3 3 3 0 3 3 3 3 44 3 3 3 000 3 3 7 00 44 666 55 55 5 000 666 8 4 4 3 7777 55 3 4444444444 3 3 55 7777 88 7777 3 88 3 55 3 3 3
lowQualScore : . . . .......................... .. . . . . . . . ..... . . . ... . ... . . .. . . . . .. . . ..... . . . . .. . . . . . ... . . ... . . ..... .. . ........ .. . . . ......... . .... .. . . . ... . . . .. .... . .. . ... . .. . . . . . . . . . .. . . . ... . . . .. .. ... .. .. . ... ... . . . . .... .. . .......... . . .. .... .. .... . .. . .. . . .
lowQualScore : 0 0 0 99999999999999999999999999 77 7 7 7 4 7 4 7 77777 7 7 9 333 4 111 7 7 77 3 7 7 0 44 0 0 00000 0 8 7 7 22 2 7 7 5 7 999 0 0 000 1 0 44444 22 0 44444444 88 0 1 1 111111111 1 2222 44 0 0 1 000 6 6 6 00 9999 3 66 7 222 3 22 3 3 3 3 1 3 3 3 6 99 6 6 6 000 6 6 3 00 88 222 11 55 7 666 222 0 0 0 6 7777 00 6 3333333333 6 6 00 7777 66 7777 6 66 6 00 6 6 6
consensus : TAACAAG-CA-T-TGATTTTAA----TTATTA--A----CT----TAATGTAC-GTACTGCAACTAT-TA-ATTTCCA-CTT-G-AA---T-TTTG-AAAG-T-CATC--GTGG-T-ACAG-G-CATGTA-CACG-T-AGAACCAC-GCCATGGTGCTCTTGCTCTCTCTCTCCCGACCTCTNTTTTTTTAACTATA-T-GGACATTTTCTGT--TATTT-A-CACGTGTATTT-AC-A-CNTTGGA-TGA--CAGATATC-C--GC-CCACTA-CATANAT-----T--TTN-AGATGAATTGAATG-ACTGTA------TAGCATTGAAATAAAG---TTTAT-A-AATC---TCTG-C-GC-GTCG--TC--A-AA-GC--GTCGGGTTT-C-GCGCGGT-A--TCCA-T-GTT-CATTT-GCA-CG-ACTTCA-TGC-ACTAAAGAG-TTCCACT-ACGACTTAC-GACAAG---ACAA-CG-TTACG-ACCTA--CGA-TTA--CGAT-GG--GTTTTGTAAAAC-GGTCCT--ACGA-TATG-TCG-TAAG-TT----CTT--CAA-TTCTAC-G-A--CTT-AC-GA--TTTA----A--GACTT----ACGA-C--TTTT-TG--T-AA-AA-CGCTGC
Reference ( family-6334 ) : TAACAAG-CA-T-TGATTTTAA----TTATTA-TA----CT----TAATGTAC-GTACTGCAACTAT-TA-ATTTCCA-CTT-G-AA---T-TTTG-AAAG-T-CATC--GTGG-T-ACAG-G-CATGTA-CACG-T-AGAACCAC-GCCATGGTGCTCTTGCTCTCTCTCTCCCGACCTCTNTTTTTTTAACTATA-T-GGACATTTTCTGT--TATTT-A-CACGTGTATTT-AC-A-CNTTGGA-TGA--CAGATATC-C--GC-CCACTA-CATANAT-----T--TTN-AGATGAATTGAATG-ACTGTA------TAGCATTGAAATAAAG---TTTAT-A-AATC---TCTG-C-GC-GTCG--TC--A-AA-GC--GTCGGGTTT-C-GCGCGGT-A--TCCA-T-GTT-CATTT-GCA-CG-ACTTCA-TGC-ACCGAAGAG-TTCCACT-ACGACTTAC-GACAAG---ACAA-CG-TTACG-ACCTA--CGA-TTA--CGAT-GG--GTTTTGTAAAAC-GGTCCT--ACGA-TATG-TCG-TAAG-TT----CTT--CAA-TTCTA--G-A--CTT-AC-GA--TTTA----A--GACTT----ACGA-C--TTTT-TG--T-AA-AA-CGCTGC
gi|1 : GTAC-AAGCTTCAACTAT-GAGAATTACA-CTTTG-AAAATT-TTTG-AAAG-T-CATT--GGGG-T-ACAG-GGCATGTAACAAG-T-AGAACCA--GCCGTG-TGCTCTT-CTCTCTCTCTTTC-----CTGTTTTTTTAACTA-A-T-GAA-ATTTCTTGT--TATTTCA-CAC-TGTTTTA-ACTATCTTTGGA-TGAACCCGATATC-C--ACGCCAC-A--ATAAAT-----T--TTA-AGATGAATTGAATGCACTG-A------TAGCAT-GAAATAAAT---TTTAT-A-AATC---TCTA-C-GCCGTCG--TC--C-CA-GC--GTCGG-TTT-CAGCGCTGT-AAATCAC-T-GT--CATTTTGTAACGGACTTCA-TGT-AC-AAAGAGGTTCCACT-ACGACTTAC-GACAAGGGCATAC-CG-TTACGCACCAT--CGA-CTA--CGATAAG--GTTTTGT-AAAC-GGTCCT--ACGATTATG-TCGTTAAGCTT----CTC--AAA-TTCTAACG-AACCTT-AC-GAAGTTTAAAGCA--AACTTCGACGCGA-CGTTTTT-TG--T-AATAATCGCTGC
gi|10 : aaaaagcatctgaattttaaatatagaaattagcgaacccttcttgtaggctcggtacaa---TTTG-C-AC-GTCAAATT--A-AA-GC--GTCGGGTTT---GCGTGGT-A--TCCA-T-ATT-CATTT--TA-AA-ACTTCA-TGC-ACTGAAGAG-TTCCACT-ACGACTTAC-TACAAA---ATAA-CG-TTACG-ATCTATACGA-TTA--TGAA-GG--GTTTTGTAAAA-----------------TG-CCG-TAAG-GT----ATT--CAA-TT-----------TT-AC-GA--TTTA----A--GACTT----AGAA-C--GTTT-TG--T-AA-AA-TGCTGcc
gi|11 : tcg---TTTG-C-AC-GTCAAATT--A-AA-GC--GTCGG--TT-T-GCGTGGT-A--TCCA-T-ATT-CATTT--TA-AA-ACTTCA-TGC-ACTGAAGAG-T-CCACT-ACGACTTAC-TACAAA---ATAA-CG-TTACG-ATCTATACGA-T-A--TGAA-GG--GTTTTGTAAAA-----------------TG-CCG-TAAG-GT----AT---CAA-TT-----------TT-AC-GA--TT-A----A--GACTT----AGAA-C--GTTT--G--T-AA-AA-TGCTG
gi|12 : tcgTTGGA-TGA--CAGCTCCC-CT-AC-TTACTA-TTTATAT-----TG-TTT-AGAAGGATGGAATG-AC--------------ATTGAAATAAA--------T-A-A-------CTG-C-GT-GTCT--TT--C-AA-GC--ATCGG-TTT-C-ATGCGGC-A--TTTA-T-GTT-CATTT-GAA-CA-ACCTCA-TGC-ATTGAGAAT-TTCCTCT-ATGACATAT-GACAA----ATGA-AG-TTACG-ACCTA--C
gi|13 : taTAACAAGTCA-TATGATCT--A----TTATTAATA----TT----GAACGTAC----CTGCAATTAT-TA-ATTTCCA-CTTGG-AA---T-TTTG-AAAG-TCCATC--GTGT-A-ACAG-G-CATGTA-CACG-TAAGAAACACAGCCATGca
gi|14 : cacgCAAG-CA-T-TGATTTT-------------------------TAATGTAC-GTACTGCAATTAT-TA-ATTTCCA-CTT-G-AA-----GTTG-AAAG-T-CATC--GTGGTT-ACAGCG-CATGT--CACGTT-AGAA-CAC-GCCATGGTGC
gi|15 : gA----TCATTA-AA----CTCCATTAAT-TACCATACTGCAACTAT-TA-ATTTTCACCCT-GTAA---TCTTTG-TAAGTT-CATT--G-GC-T-ACA--A-TGTGTA-CAGG-C-A-AATCAC-
gi|16 : AAG-TT----CTT--CAA-TTCCAC-G-A--CTT-AC-GA--TTTA----AAAGACTT----ACGA-C--TTTT-TG--T-AA-AA-cagtcacca
gi|17 : cC--A-AA-GC--GTCGGGTTT-C-GCGCGGT-A--TCCA-T-GCT-CATTT-GCA-CG-ACTTTA-T
gi|2 : TAACAAG-CA-T-TGATTTTAAAATATTATTA-TAAGCCCT----TAATGTAC-ATACTGCAACTAT-TA-ATTTTCA-CTT-G-AA---T-TTTG-GAAG-TACATT--GTGG-T-ACAG-G-CATGTA-CACG-T-AGAACCAC-ACCATG-TGCTCTTGCTCTCTCTCTCCCGACCTTTTTTTTTTTAACTATA-T-GGACATTTTCTGT--TATTT-A-CACGTGTATTT-AC-A-CTTTGGA-TGA--CAGATATC-C--GC-TCACTA-TATATAT-----T--TTCTAGATGAATTGAATG-ACTGTACGAGTGTAGCATTGAAATAAAG---TTTAT-A-AATC---TCTG-C-GC-GTTG--TC--A-AA-GC--GTCGGGTTT-C-GCGCGGT-A--TCCA-T-GTT-CATTT-GCA-CG-ACTTTA-TGC-ACTAAAGAG-TTCCACT-ACGACTTAC-GACAAG---ACAA-CG-TTACG-ACCTA--CGA-TTA--CGAT-GT--GTTTTGTAAAAC-GGTCCT--ACGA-TATG-TCG-TAAG-TT----CTT--CAA-TT-----------TT-AC-GA--TTTA----A--GACTT----ATGA-C--TTTT-TG--T-AA-AA-CGCTGC
gi|3 : TAACAAG-CAAT-TGATTTTA-------------------T----TAATGTAC-GTA--------AT-TA-ATTTCCA-CTT-G-AA---T-TTTG-AAAG-TGCATT--GTGG-T-ACAG-G-CATGTA--ACG-T-AGAACCAG-GCCAT-GTGCTC
gi|3 : ccgTTAACTATAAT-GAACATTTTCTGT--TATTT-A-CACGTGTATTT-AC-A-CGT---------------------------ACTAACATAAAT-----T--TT--AGATGAATTGAATG-ACTGTA-------AGCATTGAAATAAAG---TTTTTAA-AATC---TCTA-C-GC-GTCG--TC--C-AA-GC--GTCGGGTTT-C-GCGCTGT-A--TCCACT-GTT-CGTTT-GTA-CG-ACTTCA--GC-ACCAAAGAG-TTCCACT-ACGACTTAC-GACAAG---GCAA-CG-TTACG-A-CTA--CGA-TTA--CGAT-AG--GTTTTGT-AAAC-GGTCCT--ACGA-TATG-TCG-TAAG-TT----CTT---AA-TTCTAT-G-A--CTT-AC-GA--TTTA----A--GACTT----ACG--C--TTTT-TG--T-AA-AA-CGCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaactataatgaacattttctgttatttacacgtgtatttacacgtactaacataaattttagatgaattgaatgactgtaagcattgaaataaagtttttaaaatctctacgcgtcgtccaagcgtcgggtttcgcgctgtatccactgttcgtttgtacgacttcagcaccaaagagttccactacgacttacgacaaggcaacgttacgactacgattacgataggttttgtaaacggtcctacgatatgtcgtaagttcttaattctatgacttacgatttaagacttacgctttttgtaaaacgctg
gi|4 : ccgtaacaagcaattgattttattaatgtacgtaattaatttccacttgaattttgaaagtgcattgtggtacaggcatgtaacgtagaaccaggccatgtgctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTATA-TCGAACATTTTCTGTATTAATT-A-CACGT-TATTT-AC-A-TCTTTGA-TTA--CAGA-ATCTC--ACGTTACTA-CATAAAT-----T--TTA-AACTGAATTGAATA----GTG------TAGCATTGAAATAAAG---TT-AT-A-AATCGCATCTA-C-GC-GTTG--TC--CCAA-GC--GTCGGGTTC-C-GCGCTGT-AAATCCA-T-GTT-CATTT-GTA-CG-ACTTCA-TGC-ACCAAAGAG-TTCCAC--ACGACTTAC-GACATGC--GCAA-CGTTTACGAACCTA--CG----------T-AG--G-TTTGTAAAAC-GGTCCTCAACGC-TATGTTCG-TAAG-T------TT--CAA-TTCTAC-G-A--CTTAACAGA--TTTA----AG-GACTT----ACGA-C--TTTC-TG--TAAA-AA-CGCTGC
gi|5 : tttgattTTTTTTTA-CTATA-T-GGAC-TTTTCTGT--TCTTT-ATCACGTGCATTT-AA-C-CTTTGGA-TG---CAGATATC-C---C-CCACTA-CATAAAT-----T--TT---GAT--ATTGAATG-ACTGTA--------GCATTGAAATAAAGG--TTTAT-A-AAT----TCTA-CAGC-GTCG--TCGCA-AT-GCTGGTCGGGTTTTC-GCGCTGTTA--TCCA-TTGTTATGTTT-GTA-CG-ACTTCA-TGC--CCAAAGA--TTTCACT-ACGACTTAC-G-CAAG---GCAAGCG-T-ACG----TA--C-A-TTAAACGTT-GGAGGTTTTGTAA--CTGGTCC---ACGA-TATG-TCT-TAAG-TT----CTTATCAAATTCTA--GCA--CTT-AC-GA--TTTA----A--GACTT----ACGA-CT-TTTT-TG--T-AA-GA-AGCTG
gi|6 : TTTTAATTATA-T-GGACATTTTCTGT--G---T-A-CA--TGTATTT-GC-A-CATTGGA-TGA--CAGATATC-C--GC-CCACTA-TATATACATGTAT--TTT-AGATGAATTGAATG-ACTGTA--------ACATTGAAAT------------------C---TCTG-C-TC-GTCG--TC--A-AA-GC--GTCAGGTTT-C-ACGCGGT-A--TCCA-T-GTT-CATTT-GCA-CT-ATTTCA-TGC-ACTAAAGAG-TTCCACT-ACGACTTAC-GACAAG---ACAA-CA-TTACG-ACCTA--CGA-TTA--CGAT-GG--GTTTTGTAAAAC-TGTCCT--ACGA-TATG-TCG-TAAG-TT----CTT--CAA-TTTTAT-G-A--CTT-AC-GA--TTTA----A--GACTT----ACAA-C--TTTT-TG--T-AA-AA-CGCTGC
gi|7 : TATTTCAC-A-CAATAGAATGA--AGGATATC-CTAAC-CCACTA-TA-ATAT-----TATTTC-ACGTGAATTGA-TG-ACT-TA------TA-CATTGAA-TA--GCCTTTTAT-ATAATC---GCTGTC-GC-GTCG--TC--A-AAAGC--GTCGG-TTT-C-GC-CGGT-A--TCCA-T--CT-CATTT-GCA-CG-ACT--ATTGCTACTAAAG-T-TTCCCCTGAC-ACTTACGGATAAG---ACAA-C--TTAC--ACCTA--CA---TA---GAT-GT--GTTTT-T-AAAC---TCCT--ACGATTATG-TCG-TAAG-TTTCTGTTT--CAA-TTTTAC-G-A--CTT-AT--A--TTTA----A--GAC-T----ACGA-C--TTTTATGGTT-AA-AA-CGCTGCc
gi|8 : tcCTG-C-GC-GTTG--GC--A-AA-GC--AACTGGTTT-A-GCATGGT-A--TCCA-T-GTT-CATTT-GCA-CA-TCTTCA-TGT-ACCAAAGAG-TTCCACT-ATGACTTGC-AACAAG---GCGG-TG-TTAAG-ACCTA--AGACCTA--CGA-------TTACGTACAAA-AATCCT--ACGA-TATG-TCG-TAAG-TT----CTT--CAT-TTCTAC-A-A--CAT-AC-GA--TTTA----A--GATTT----AAGATT--TTTT-TG--T-AA-AG-CACTGCca
gi|9 : TAACAG---A-T-TGCTTTTGA----TTAT-------------------GTAC-GTACTG-AACTCTGTA-ATTTTCA-ATT-G-AA---T-TTTGAAAAG-TGCATTGGGTGG-TAACAG-G-CATGT--CA-G-T-AG--CC-C-GCCATGGTGCACT
Alignments
lowQualScore : 99999999999999999999999 1 11111 2 11 1 1 22222 22222 11111111 11 222222222 1111 11 111 11 111
lowQualScore : 8 8 8 33333333333333333333333 5 5 0 5 5 0 5 1 5 33333 5 5 2 999 1 666 5 5 00 4 5 5 3 66 0 5 66666 1 0 6 6 99 3 6 6 2 5 555 1 5 777 0 5 22222 99 1 55555555 55 5 0 0 888888888 0 6666 33 5 5 0 777 3 3 3 00 6666 3 44 6 444 3 99 3 3 3 3 0 3 3 3 3 0 3 3 3 000 3 3 7 00 44 666 55 55 0 000 666 4 4 4 4 3 7777 55 3 333 55 3 3 55 55 7777 3 7777 3 88 3 55 3 3 3
lowQualScore : . . . ....................... . . . . . . . . . ..... . . . ... . ... . . .. . . . . .. . . ..... . . . . .. . . . . . ... . . ... . . ..... .. . ........ .. . . . ......... . .... .. . . . ... . . . .. .... . .. . ... . .. . . . . . . . . . . . . . ... . . . .. .. ... .. .. . ... ... . . . . . .... .. . ... .. . . .. .. .... . .... . .. . .. . . .
lowQualScore : 0 0 0 99999999999999999999999 7 7 7 7 7 4 7 4 7 77777 7 7 9 333 4 111 7 7 77 3 7 7 0 44 0 0 00000 0 8 7 7 22 2 7 7 5 7 999 0 0 000 1 0 44444 22 0 44444444 88 0 1 1 111111111 1 2222 44 0 0 1 000 6 6 6 00 9999 3 66 7 222 3 22 3 3 3 3 1 3 3 3 6 9 6 6 6 000 6 6 3 00 88 222 11 55 8 666 222 0 0 0 0 6 7777 00 6 888 00 6 6 00 00 7777 6 7777 6 66 6 00 6 6 6
consensus : TAACAAG-CA-T-TGATTTTAA----TTATTA--A------TTAATGTAC-GTAC-TGCAACTAT-TA-ATTTCCA-CTT-G-AA---T-TTTG-AAAG-T-CATC--GTGG-T-ACAG-G-CATGTA-CACG-T-AGAACCAC-GCCATGGTGCTCTTGCTCTCTCTCTCCCGACCTCTNTTTTTTTAACTATA-T-GGACATTTTCTGT--TATTT-A-CACGTGTATTT-AC-A-CNTTGGA-TGA--CAGATATC-C--GC-CCACTA-CATANAT-----T--TTN-AGATGAATTGAATG-ACTGTA------TAGCATTGAAATAAAG---TTTAT-A-AATC---TCTG-C-GC-GTCG--TC--A-AA-GC--GTCGGGTTT-C-GCGCGGT-A--TCCA-T-GTT-CATTT-GCA-CG-ACT-TCATGC-ACTAAAGAG-TTCCACT-ACGACTTACG-ACAAG---ACAA-CG-TTACG-ACCTA--CGA-TTA--CGAT-GG--GTTTTGTAAAAC-GGTCCT--ACGA-T-ATG-TCG-TAAG-TTC----TT--CAA-TTCT-ACGA--CTT-AC-GA--TTT--A----A-GACTT----ACGA-C--TTTT-TG--T-AA-AA-CGCTGC
Reference ( family-6334 ) : TAACAAG-CA-T-TGATTTTAA----TTATTA--A----C-TTAATGTAC-GTAC-TGCAACTAT-TA-ATTTCCA-CTT-G-AA---T-TTTG-AAAG-T-CATC--GTGG-T-ACAG-G-CATGTA-CACG-T-AGAACCAC-GCCATGGTGCTCTTGCTCTCTCTCTCCCGACCTCTNTTTTTTTAACTATA-T-GGACATTTTCTGT--TATTT-A-CACGTGTATTT-AC-A-CNTTGGA-TGA--CAGATATC-C--GC-CCACTA-CATANAT-----T--TTN-AGATGAATTGAATG-ACTGTA------TAGCATTGAAATAAAG---TTTAT-A-AATC---TCTG-C-GC-GTCG--TC--A-AA-GC--GTCGGGTTT-C-GCGCGGT-A--TCCA-T-GTT-CATTT-GCA-CG-ACT-TCATGC-ACTAAAGAG-TTCCACT-ACGACTTACG-ACAAG---ACAA-CG-TTACG-ACCTA--CGA-TTA--CGAT-GG--GTTTTGTAAAAC-GGTCCT--ACGA-T-ATG-TCG-TAAG-TTC----TT--CAA-TTCT-ACGA--CTT-AC-GA--TTT--A----A-GACTT----ACGA-C--TTTT-TG--T-AA-AA-CGCTGC
gi|1 : GTAC-AAGC-TTCAACTAT-GAGAATTACA-CTTTG-AAAATT-TTTG-AAAG-T-CATT--GGGG-T-ACAG-GGCATGTAACAAG-T-AGAACCA--GCCGTG-TGCTCTT-CTCTCTCTCTTTC-----CTGTTTTTTTAACTA-A-T-GAA-ATTTCTTGT--TATTTCA-CAC-TGTTTTA-ACTATCTTTGGA-TGAACCCGATATC-C--ACGCCAC-A--ATAAAT-----T--TTA-AGATGAATTGAATGCACTG-A------TAGCAT-GAAATAAAT---TTTAT-A-AATC---TCTA-C-GCCGTCG--TC--C-CA-GC--GTCGG-TTT-CAGCGCTGT-AAATCAC-T-GT--CATTTTGTAACGGACT-TCATGT-AC-AAAGAGGTTCCACT-ACGACTTACG-ACAAGGGCATAC-CG-TTACGCACCAT--CGA-CTA--CGATAAG--GTTTTGT-AAAC-GGTCCT--ACGATT-ATG-TCGTTAAGCTTC----TC--AAA-TTCTAACGAACCTT-AC-GAAGTTT--AAAGCA-AACTTCGACGCGA-CGTTTTT-TG--T-AATAATCGCTGC
gi|10 : aaaaagcatctgaattttaaatatagaaattagcgaacccttcttgtaggctcggtacaa---TTTG-C-AC-GTCAAATT--A-AA-GC--GTCGGGTTT---GCGTGGT-A--TCCA-T-ATT-CATTT--TA-AA-ACT-TCATGC-ACTGAAGAG-TTCCACT-ACGACTTACT-ACAAA---ATAA-CG-TTACG-ATCTATACGA-TTA--TGAA-GG--GTTTTGTAAAA------------------TG-CCG-TAAG-GTA----TT--CAA-TT----------TT-AC-GA--TTT--A----A-GACTT----AGAA-C--GTTT-TG--T-AA-AA-TGCTGcc
gi|11 : tcg---TTTG-C-AC-GTCAAATT--A-AA-GC--GTCGG--TT-T-GCGTGGT-A--TCCA-T-ATT-CATTT--TA-AA-ACT-TCATGC-ACTGAAGAG-T-CCACT-ACGACTTACT-ACAAA---ATAA-CG-TTACG-ATCTATACGA-T-A--TGAA-GG--GTTTTGTAAAA------------------TG-CCG-TAAG-GTA----T---CAA-TTTT-ACGA--------------TT--A----A-GACTT----AGAA-C--GTTT--G--T-AA-AA-TGCTG
gi|12 : tcgTTGGA-TGA--CAGCTCCC-CT-AC-TTACTA-TTTATAT-----TG-TTT-AGAAGGATGGAATG-AC--------------ATTGAAATAAA--------T-A-A-------CTG-C-GT-GTCT--TT--C-AA-GC--ATCGG-TTT-C-ATGCGGC-A--TTTA-T-GTT-CATTT-GAA-CA-ACC-TCATGC-ATTGAGAAT-TTCCTCT-ATGACATATG-ACAA----ATGA-AG-TTACG-ACCTA--C
gi|13 : taTAACAAGTCA-TATGATCT--A----TTATTA--A-------TATTGAAC-GTACCTGCAATTAT-TA-ATTTCCA-CTTGG-AA---T-TTTG-AAAG-TCCATC--GTGT-A-ACAG-G-CATGTA-CACG-TAAGAAACACAGCCATGca
gi|14 : cacgCAAG-CA-T-TGATTTT----------------------TAATGTAC-GTAC-TGCAATTAT-TA-ATTTCCA-CTT-G-AA-----GTTG-AAAG-T-CATC--GTGGTT-ACAGCG-CATGT--CACGTT-AGAA-CAC-GCCATGGTGC
gi|15 : gA----TCATTA--AACTCCATTAAT-TACCATAC-TGCAACTAT-TA-ATTTTCACCCT-GTAA---TCTTTG-TAAGTT-CATT--G-GC-T-ACA--A-TGTGTA-CAGG-C-A-AATCAC-
gi|16 : AAG-TTC----TT--CAA-TTCC-ACGA--CTT-AC-GA--TTTAAA----A-GACTT----ACGA-C--TTTT-TG--T-AA-AA-cagtcacca
gi|17 : cC--A-AA-GC--GTCGGGTTT-C-GCGCGGT-A--TCCA-T-GCT-CATTT-GCA-CG-ACT-TTAT
gi|2 : TAACAAG-CA-T-TGATTTTAAAATATTATTATAAGCC-C-TTAATGTAC-ATAC-TGCAACTAT-TA-ATTTTCA-CTT-G-AA---T-TTTG-GAAG-TACATT--GTGG-T-ACAG-G-CATGTA-CACG-T-AGAACCAC-ACCATG-TGCTCTTGCTCTCTCTCTCCCGACCTTTTTTTTTTTAACTATA-T-GGACATTTTCTGT--TATTT-A-CACGTGTATTT-AC-A-CTTTGGA-TGA--CAGATATC-C--GC-TCACTA-TATATAT-----T--TTCTAGATGAATTGAATG-ACTGTACGAGTGTAGCATTGAAATAAAG---TTTAT-A-AATC---TCTG-C-GC-GTTG--TC--A-AA-GC--GTCGGGTTT-C-GCGCGGT-A--TCCA-T-GTT-CATTT-GCA-CG-ACT-TTATGC-ACTAAAGAG-TTCCACT-ACGACTTACG-ACAAG---ACAA-CG-TTACG-ACCTA--CGA-TTA--CGAT-GT--GTTTTGTAAAAC-GGTCCT--ACGA-T-ATG-TCG-TAAG-TTC----TT--CAA-TT----------TT-AC-GA--TTT--A----A-GACTT----ATGA-C--TTTT-TG--T-AA-AA-CGCTGC
gi|3 : TAACAAG-CAAT-TGATTTTA--------------------TTAATGTAC-GTA---------AT-TA-ATTTCCA-CTT-G-AA---T-TTTG-AAAG-TGCATT--GTGG-T-ACAG-G-CATGTA--ACG-T-AGAACCAG-GCCAT-GTGCTC
gi|3 : ccgTTAACTATAAT-GAACATTTTCTGT--TATTT-A-CACGTGTATTT-AC-A-CGT---------------------------ACTAACATAAAT-----T--TT--AGATGAATTGAATG-ACTGTA-------AGCATTGAAATAAAG---TTTTTAA-AATC---TCTA-C-GC-GTCG--TC--C-AA-GC--GTCGGGTTT-C-GCGCTGT-A--TCCACT-GTT-CGTTT-GTA-CG-ACT-TCA-GC-ACCAAAGAG-TTCCACT-ACGACTTACG-ACAAG---GCAA-CG-TTACG-A-CTA--CGA-TTA--CGAT-AG--GTTTTGT-AAAC-GGTCCT--ACGA-T-ATG-TCG-TAAG-TTC----TT---AA-TTCT-ATGA--CTT-AC-GA--TTT--A----A-GACTT----ACG--C--TTTT-TG--T-AA-AA-CGCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaactataatgaacattttctgttatttacacgtgtatttacacgtactaacataaattttagatgaattgaatgactgtaagcattgaaataaagtttttaaaatctctacgcgtcgtccaagcgtcgggtttcgcgctgtatccactgttcgtttgtacgacttcagcaccaaagagttccactacgacttacgacaaggcaacgttacgactacgattacgataggttttgtaaacggtcctacgatatgtcgtaagttcttaattctatgacttacgatttaagacttacgctttttgtaaaacgctg
gi|4 : ccgtaacaagcaattgattttattaatgtacgtaattaatttccacttgaattttgaaagtgcattgtggtacaggcatgtaacgtagaaccaggccatgtgctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTATA-TCGAACATTTTCTGTATTAATT-A-CACGT-TATTT-AC-A-TCTTTGA-TTA--CAGA-ATCTC--ACGTTACTA-CATAAAT-----T--TTA-AACTGAATTGAATA----GTG------TAGCATTGAAATAAAG---TT-AT-A-AATCGCATCTA-C-GC-GTTG--TC--CCAA-GC--GTCGGGTTC-C-GCGCTGT-AAATCCA-T-GTT-CATTT-GTA-CG-ACT-TCATGC-ACCAAAGAG-TTCCAC--ACGACTTACG-ACATGC--GCAA-CGTTTACGAACCTA--CG----------T-AG--G-TTTGTAAAAC-GGTCCTCAACGC-T-ATGTTCG-TAAG-T------TT--CAA-TTCT-ACGA--CTTAACAGA--TTT--A----AGGACTT----ACGA-C--TTTC-TG--TAAA-AA-CGCTGC
gi|5 : tttgattTTTTTTTA-CTATA-T-GGAC-TTTTCTGT--TCTTT-ATCACGTGCATTT-AA-C-CTTTGGA-TG---CAGATATC-C---C-CCACTA-CATAAAT-----T--TT---GAT--ATTGAATG-ACTGTA--------GCATTGAAATAAAGG--TTTAT-A-AAT----TCTA-CAGC-GTCG--TCGCA-AT-GCTGGTCGGGTTTTC-GCGCTGTTA--TCCA-TTGTTATGTTT-GTA-CG-ACT-TCATGC--CCAAAGA--TTTCACT-ACGACTTACG--CAAG---GCAAGCG-T-ACG----TA--C-A-TTAAACGTT-GGAGGTTTTGTAA--CTGGTCC---ACGA-T-ATG-TCT-TAAG-TTC----TTATCAAATTCT-AGCA--CTT-AC-GA--TTT--A----A-GACTT----ACGA-CT-TTTT-TG--T-AA-GA-AGCTG
gi|6 : TTTTAATTATA-T-GGACATTTTCTGT--G---T-A-CA--TGTATTT-GC-A-CATTGGA-TGA--CAGATATC-C--GC-CCACTA-TATATACATGTAT--TTT-AGATGAATTGAATG-ACTGTA--------ACATTGAAAT------------------C---TCTG-C-TC-GTCG--TC--A-AA-GC--GTCAGGTTT-C-ACGCGGT-A--TCCA-T-GTT-CATTT-GCA-CT-ATT-TCATGC-ACTAAAGAG-TTCCACT-ACGACTTACG-ACAAG---ACAA-CA-TTACG-ACCTA--CGA-TTA--CGAT-GG--GTTTTGTAAAAC-TGTCCT--ACGA-T-ATG-TCG-TAAG-TTC----TT--CAA-TTTT-ATGA--CTT-AC-GA--TTT--A----A-GACTT----ACAA-C--TTTT-TG--T-AA-AA-CGCTGC
gi|7 : TATTTCAC-A-CAATAGAATGA--AGGATATC-CTAAC-CCACTA-TA-ATAT-----TATTTC-ACGTGAATTGA-TG-ACT-TA------TA-CATTGAA-TA--GCCTTTTAT-ATAATC---GCTGTC-GC-GTCG--TC--A-AAAGC--GTCGG-TTT-C-GC-CGGT-A--TCCA-T--CT-CATTT-GCA-CG-ACTAT--TGCTACTAAAG-T-TTCCCCTGAC-ACTTACGGATAAG---ACAA-C--TTAC--ACCTA--CA---TA---GAT-GT--GTTTT-TAAA-C---TCCT--ACGA-TTATG-TCG-TAAG-TTTCTGTTT--CAA-TTTT-ACGA--CTT-AT--A--TTT--A----A-GAC-T----ACGA-C--TTTTATGGTT-AA-AA-CGCTGCc
gi|8 : tcCTG-C-GC-GTTG--GC--A-AA-GC--AACTGGTTT-A-GCATGGT-A--TCCA-T-GTT-CATTT-GCA-CA-TCT-TCATGT-ACCAAAGAG-TTCCACT-ATGACTTGCA-ACAAG---GCGG-TG-TTAAG-ACCTA--AGACCTA--CGA-------TTACGTACAAA-AATCCT--ACGA-T-ATG-TCG-TAAG-TTC----TT--CAT-TTCT-ACAA--CAT-AC-GA--TTT--A----A-GATTT----AAGATT--TTTT-TG--T-AA-AG-CACTGCca
gi|9 : TAACAG---A-T-TGCTTTTGA----TTAT----------------GTAC-GTAC-TG-AACTCTGTA-ATTTTCA-ATT-G-AA---T-TTTGAAAAG-TGCATTGGGTGG-TAACAG-G-CATGT--CA-G-T-AG--CC-C-GCCATGGTGCACT
Alignments
lowQualScore : 7777777777777777777777 1 11111 1 11 1 1 22222 22222 11111111 11 222222222 1111 11 111 11 111
lowQualScore : 8 8 8 8888888888888888888888 5 5 0 5 5 0 5 5 1 33333 5 5 7 5 999 1 666 5 5 00 4 5 5 3 66 0 5 66666 1 0 6 6 99 3 6 6 2 5 555 1 5 777 0 5 22222 99 1 55555555 55 5 0 0 888888888 0 6666 33 5 5 0 777 3 3 3 00 6666 3 44 6 444 3 99 3 3 3 3 0 3 3 3 3 0 3 3 3 000 3 3 7 00 44 666 55 55 0 000 666 4 4 4 4 3 7777 55 3 333 55 3 3 55 55 7777 3 7777 3 88 3 55 3 3 3
lowQualScore : . . . ...................... . . . . . . . . . ..... . . . . ... . ... . . .. . . . . .. . . ..... . . . . .. . . . . . ... . . ... . . ..... .. . ........ .. . . . ......... . .... .. . . . ... . . . .. .... . .. . ... . .. . . . . . . . . . . . . . ... . . . .. .. ... .. .. . ... ... . . . . . .... .. . ... .. . . .. .. .... . .... . .. . .. . . .
lowQualScore : 0 0 0 7777777777777777777777 7 7 7 7 7 4 7 7 4 77777 7 7 1 7 333 4 111 7 7 77 3 7 7 0 44 0 0 00000 0 8 7 7 22 2 7 7 5 7 999 0 0 000 1 0 44444 22 0 44444444 88 0 1 1 111111111 1 2222 44 0 0 1 000 6 6 6 00 9999 3 66 7 222 3 22 3 3 3 3 1 3 3 3 6 9 6 6 6 000 6 6 3 00 88 222 11 55 8 666 222 0 0 0 0 6 7777 00 6 888 00 6 6 00 00 7777 6 7777 6 66 6 00 6 6 6
consensus : TAACAAG-CA-T-TGATTTTAA----TTATTA--A----TTAATGTAC-GTAC-TGCAACTAT-TA-ATTTCCA-CTT-G-AA---T-TTTG-AAAG-T-C-ATC--GTGG-T-ACAG-G-CATGTA-CACG-T-AGAACCAC-GCCATGGTGCTCTTGCTCTCTCTCTCCCGACCTCTNTTTTTTTAACTATA-T-GGACATTTTCTGT--TATTT-A-CACGTGTATTT-AC-A-CNTTGGA-TGA--CAGATATC-C--GC-CCACTA-CATANAT-----T--TTN-AGATGAATTGAATG-ACTGTA------TAGCATTGAAATAAAG---TTTAT-A-AATC---TCTG-C-GC-GTCG--TC--A-AA-GC--GTCGGGTTT-C-GCGCGGT-A--TCCA-T-GTT-CATTT-GCA-CG-ACT-TCATGC-ACTAAAGAG-TTCCACT-ACGACTTACG-ACAAG---ACAA-CG-TTACG-ACCTA--CGA-TTA--CGAT-GG--GTTTTGTAAAAC-GGTCCT--ACGA-T-ATG-TCG-TAAG-TTC----TT--CAA-TTCT-ACGA--CTT-AC-GA--TTT--A----A-GACTT----ACGA-C--TTTT-TG--T-AA-AA-CGCTGC
Reference ( family-6334 ) : TAACAAG-CA-T-TGATTTTAA----TTATTA--A----TTAATGTAC-GTAC-TGCAACTAT-TA-ATTTCCA-CTT-G-AA---T-TTTG-AAAG-T-C-ATC--GTGG-T-ACAG-G-CATGTA-CACG-T-AGAACCAC-GCCATGGTGCTCTTGCTCTCTCTCTCCCGACCTCTNTTTTTTTAACTATA-T-GGACATTTTCTGT--TATTT-A-CACGTGTATTT-AC-A-CNTTGGA-TGA--CAGATATC-C--GC-CCACTA-CATANAT-----T--TTN-AGATGAATTGAATG-ACTGTA------TAGCATTGAAATAAAG---TTTAT-A-AATC---TCTG-C-GC-GTCG--TC--A-AA-GC--GTCGGGTTT-C-GCGCGGT-A--TCCA-T-GTT-CATTT-GCA-CG-ACT-TCATGC-ACTAAAGAG-TTCCACT-ACGACTTACG-ACAAG---ACAA-CG-TTACG-ACCTA--CGA-TTA--CGAT-GG--GTTTTGTAAAAC-GGTCCT--ACGA-T-ATG-TCG-TAAG-TTC----TT--CAA-TTCT-ACGA--CTT-AC-GA--TTT--A----A-GACTT----ACGA-C--TTTT-TG--T-AA-AA-CGCTGC
gi|1 : GTAC-AAGC-TTCAACTAT-GAGAATTACA-CTTTG-AAAATT-TTTG-AAAG-T-C-ATT--GGGG-T-ACAG-GGCATGTAACAAG-T-AGAACCA--GCCGTG-TGCTCTT-CTCTCTCTCTTTC-----CTGTTTTTTTAACTA-A-T-GAA-ATTTCTTGT--TATTTCA-CAC-TGTTTTA-ACTATCTTTGGA-TGAACCCGATATC-C--ACGCCAC-A--ATAAAT-----T--TTA-AGATGAATTGAATGCACTG-A------TAGCAT-GAAATAAAT---TTTAT-A-AATC---TCTA-C-GCCGTCG--TC--C-CA-GC--GTCGG-TTT-CAGCGCTGT-AAATCAC-T-GT--CATTTTGTAACGGACT-TCATGT-AC-AAAGAGGTTCCACT-ACGACTTACG-ACAAGGGCATAC-CG-TTACGCACCAT--CGA-CTA--CGATAAG--GTTTTGT-AAAC-GGTCCT--ACGATT-ATG-TCGTTAAGCTTC----TC--AAA-TTCTAACGAACCTT-AC-GAAGTTT--AAAGCA-AACTTCGACGCGA-CGTTTTT-TG--T-AATAATCGCTGC
gi|10 : aaaaagcatctgaattttaaatatagaaattagcgaacccttcttgtaggctcggtacaa---TTTG-C-AC-GTCAAATT--A-AA-GC--GTCGGGTTT---GCGTGGT-A--TCCA-T-ATT-CATTT--TA-AA-ACT-TCATGC-ACTGAAGAG-TTCCACT-ACGACTTACT-ACAAA---ATAA-CG-TTACG-ATCTATACGA-TTA--TGAA-GG--GTTTTGTAAAA------------------TG-CCG-TAAG-GTA----TT--CAA-TT----------TT-AC-GA--TTT--A----A-GACTT----AGAA-C--GTTT-TG--T-AA-AA-TGCTGcc
gi|11 : tcg---TTTG-C-AC-GTCAAATT--A-AA-GC--GTCGG--TT-T-GCGTGGT-A--TCCA-T-ATT-CATTT--TA-AA-ACT-TCATGC-ACTGAAGAG-T-CCACT-ACGACTTACT-ACAAA---ATAA-CG-TTACG-ATCTATACGA-T-A--TGAA-GG--GTTTTGTAAAA------------------TG-CCG-TAAG-GTA----T---CAA-TTTT-ACGA--------------TT--A----A-GACTT----AGAA-C--GTTT--G--T-AA-AA-TGCTG
gi|12 : tcgTTGGA-TGA--CAGCTCCC-CT-AC-TTACTA-TTTATAT-----TG-TTT-AGAAGGATGGAATG-AC--------------ATTGAAATAAA--------T-A-A-------CTG-C-GT-GTCT--TT--C-AA-GC--ATCGG-TTT-C-ATGCGGC-A--TTTA-T-GTT-CATTT-GAA-CA-ACC-TCATGC-ATTGAGAAT-TTCCTCT-ATGACATATG-ACAA----ATGA-AG-TTACG-ACCTA--C
gi|13 : taTAACAAGTCA-TATGATCT--A----TTATTA--A----T-ATTGAAC-GTACCTGCAATTAT-TA-ATTTCCA-CTT-GGAA---T-TTTG-AAAG-T-CCATC--GTGT-A-ACAG-G-CATGTA-CACG-TAAGAAACACAGCCATGca
gi|14 : cacgCAAG-CA-T-TGATTTT--------------------TAATGTAC-GTAC-TGCAATTAT-TA-ATTTCCA-CTT-G-AA-----GTTG-AAAG-T-C-ATC--GTGGTT-ACAGCG-CATGT--CACGTT-AGAA-CAC-GCCATGGTGC
gi|15 : g--A----TTAAT-TACCATAC-TGCAACTAT-TA-ATTTTCACCCT-GTAA---TCTTTG-TAAGTT-C-ATT--G-GC-T-ACA--A-TGTGTA-CAGG-C-A-AATCAC-
gi|16 : atcattaaactccAAG-TTC----TT--CAA-TTCC-ACGA--CTT-AC-GA--TTTAAA----A-GACTT----ACGA-C--TTTT-TG--T-AA-AA-cagtcacca
gi|17 : cC--A-AA-GC--GTCGGGTTT-C-GCGCGGT-A--TCCA-T-GCT-CATTT-GCA-CG-ACT-TTAT
gi|2 : TAACAAG-CA-T-TGATTTTAAAATATTATTATAAGCCCTTAATGTAC-ATAC-TGCAACTAT-TA-ATTTTCA-CTT-G-AA---T-TTTG-GAAG-TAC-ATT--GTGG-T-ACAG-G-CATGTA-CACG-T-AGAACCAC-ACCATG-TGCTCTTGCTCTCTCTCTCCCGACCTTTTTTTTTTTAACTATA-T-GGACATTTTCTGT--TATTT-A-CACGTGTATTT-AC-A-CTTTGGA-TGA--CAGATATC-C--GC-TCACTA-TATATAT-----T--TTCTAGATGAATTGAATG-ACTGTACGAGTGTAGCATTGAAATAAAG---TTTAT-A-AATC---TCTG-C-GC-GTTG--TC--A-AA-GC--GTCGGGTTT-C-GCGCGGT-A--TCCA-T-GTT-CATTT-GCA-CG-ACT-TTATGC-ACTAAAGAG-TTCCACT-ACGACTTACG-ACAAG---ACAA-CG-TTACG-ACCTA--CGA-TTA--CGAT-GT--GTTTTGTAAAAC-GGTCCT--ACGA-T-ATG-TCG-TAAG-TTC----TT--CAA-TT----------TT-AC-GA--TTT--A----A-GACTT----ATGA-C--TTTT-TG--T-AA-AA-CGCTGC
gi|3 : TAACAAG-CAAT-TGATTTTA------------------TTAATGTAC-GTA---------AT-TA-ATTTCCA-CTT-G-AA---T-TTTG-AAAG-TGC-ATT--GTGG-T-ACAG-G-CATGTA--ACG-T-AGAACCAG-GCCAT-GTGCTC
gi|3 : ccgTTAACTATAAT-GAACATTTTCTGT--TATTT-A-CACGTGTATTT-AC-A-CGT---------------------------ACTAACATAAAT-----T--TT--AGATGAATTGAATG-ACTGTA-------AGCATTGAAATAAAG---TTTTTAA-AATC---TCTA-C-GC-GTCG--TC--C-AA-GC--GTCGGGTTT-C-GCGCTGT-A--TCCACT-GTT-CGTTT-GTA-CG-ACT-TCA-GC-ACCAAAGAG-TTCCACT-ACGACTTACG-ACAAG---GCAA-CG-TTACG-A-CTA--CGA-TTA--CGAT-AG--GTTTTGT-AAAC-GGTCCT--ACGA-T-ATG-TCG-TAAG-TTC----TT---AA-TTCT-ATGA--CTT-AC-GA--TTT--A----A-GACTT----ACG--C--TTTT-TG--T-AA-AA-CGCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaactataatgaacattttctgttatttacacgtgtatttacacgtactaacataaattttagatgaattgaatgactgtaagcattgaaataaagtttttaaaatctctacgcgtcgtccaagcgtcgggtttcgcgctgtatccactgttcgtttgtacgacttcagcaccaaagagttccactacgacttacgacaaggcaacgttacgactacgattacgataggttttgtaaacggtcctacgatatgtcgtaagttcttaattctatgacttacgatttaagacttacgctttttgtaaaacgctg
gi|4 : ccgtaacaagcaattgattttattaatgtacgtaattaatttccacttgaattttgaaagtgcattgtggtacaggcatgtaacgtagaaccaggccatgtgctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTATA-TCGAACATTTTCTGTATTAATT-A-CACGT-TATTT-AC-A-TCTTTGA-TTA--CAGA-ATCTC--ACGTTACTA-CATAAAT-----T--TTA-AACTGAATTGAATA----GTG------TAGCATTGAAATAAAG---TT-AT-A-AATCGCATCTA-C-GC-GTTG--TC--CCAA-GC--GTCGGGTTC-C-GCGCTGT-AAATCCA-T-GTT-CATTT-GTA-CG-ACT-TCATGC-ACCAAAGAG-TTCCAC--ACGACTTACG-ACATGC--GCAA-CGTTTACGAACCTA--CG----------T-AG--G-TTTGTAAAAC-GGTCCTCAACGC-T-ATGTTCG-TAAG-T------TT--CAA-TTCT-ACGA--CTTAACAGA--TTT--A----AGGACTT----ACGA-C--TTTC-TG--TAAA-AA-CGCTGC
gi|5 : tttgattTTTTTTTA-CTATA-T-GGAC-TTTTCTGT--TCTTT-ATCACGTGCATTT-AA-C-CTTTGGA-TG---CAGATATC-C---C-CCACTA-CATAAAT-----T--TT---GAT--ATTGAATG-ACTGTA--------GCATTGAAATAAAGG--TTTAT-A-AAT----TCTA-CAGC-GTCG--TCGCA-AT-GCTGGTCGGGTTTTC-GCGCTGTTA--TCCA-TTGTTATGTTT-GTA-CG-ACT-TCATGC--CCAAAGA--TTTCACT-ACGACTTACG--CAAG---GCAAGCG-T-ACG----TA--C-A-TTAAACGTT-GGAGGTTTTGTAA--CTGGTCC---ACGA-T-ATG-TCT-TAAG-TTC----TTATCAAATTCT-AGCA--CTT-AC-GA--TTT--A----A-GACTT----ACGA-CT-TTTT-TG--T-AA-GA-AGCTG
gi|6 : TTTTAATTATA-T-GGACATTTTCTGT--G---T-A-CA--TGTATTT-GC-A-CATTGGA-TGA--CAGATATC-C--GC-CCACTA-TATATACATGTAT--TTT-AGATGAATTGAATG-ACTGTA--------ACATTGAAAT------------------C---TCTG-C-TC-GTCG--TC--A-AA-GC--GTCAGGTTT-C-ACGCGGT-A--TCCA-T-GTT-CATTT-GCA-CT-ATT-TCATGC-ACTAAAGAG-TTCCACT-ACGACTTACG-ACAAG---ACAA-CA-TTACG-ACCTA--CGA-TTA--CGAT-GG--GTTTTGTAAAAC-TGTCCT--ACGA-T-ATG-TCG-TAAG-TTC----TT--CAA-TTTT-ATGA--CTT-AC-GA--TTT--A----A-GACTT----ACAA-C--TTTT-TG--T-AA-AA-CGCTGC
gi|7 : TATTTCAC-A-CAATAGAATGA--AGGATATC-CTAAC-CCACTA-TA-ATAT-----TATTTC-ACGTGAATTGA-TG-ACT-TA------TA-CATTGAA-TA--GCCTTTTAT-ATAATC---GCTGTC-GC-GTCG--TC--A-AAAGC--GTCGG-TTT-C-GC-CGGT-A--TCCA-T--CT-CATTT-GCA-CG-ACTAT--TGCTACTAAAG-T-TTCCCCTGAC-ACTTACGGATAAG---ACAA-C--TTAC--ACCTA--CA---TA---GAT-GT--GTTTT-TAAA-C---TCCT--ACGA-TTATG-TCG-TAAG-TTTCTGTTT--CAA-TTTT-ACGA--CTT-AT--A--TTT--A----A-GAC-T----ACGA-C--TTTTATGGTT-AA-AA-CGCTGCc
gi|8 : tcCTG-C-GC-GTTG--GC--A-AA-GC--AACTGGTTT-A-GCATGGT-A--TCCA-T-GTT-CATTT-GCA-CA-TCT-TCATGT-ACCAAAGAG-TTCCACT-ATGACTTGCA-ACAAG---GCGG-TG-TTAAG-ACCTA--AGACCTA--CGA-------TTACGTACAAA-AATCCT--ACGA-T-ATG-TCG-TAAG-TTC----TT--CAT-TTCT-ACAA--CAT-AC-GA--TTT--A----A-GATTT----AAGATT--TTTT-TG--T-AA-AG-CACTGCca
gi|9 : TAACAG---A-T-TGCTTTTGA----TTAT--------------GTAC-GTAC-TG-AACTCTGTA-ATTTTCA-ATT-G-AA---T-TTTGAAAAG-TGC-ATTGGGTGG-TAACAG-G-CATGT--CA-G-T-AG--CC-C-GCCATGGTGCACT
Alignments
lowQualScore : 7777777777777777777777 1 11111 1 11 1 1 22222 22222 11111111 11 222222222 1111 11 111 11 111
lowQualScore : 8 8 8 8888888888888888888888 5 5 0 5 5 0 5 5 1 33333 5 5 7 5 999 1 666 5 5 00 4 5 5 3 66 0 5 66666 1 0 6 6 99 3 6 6 2 5 555 1 5 777 0 5 22222 99 1 55555555 55 5 0 0 888888888 0 6666 33 5 5 0 777 3 3 3 00 6666 3 44 6 444 3 99 3 3 3 3 0 3 3 3 3 0 3 3 3 000 3 3 7 00 44 666 55 55 0 000 666 4 4 4 4 3 7777 55 3 333 55 3 3 55 55 7777 3 7777 3 88 3 55 3 3 3
lowQualScore : . . . ...................... . . . . . . . . . ..... . . . . ... . ... . . .. . . . . .. . . ..... . . . . .. . . . . . ... . . ... . . ..... .. . ........ .. . . . ......... . .... .. . . . ... . . . .. .... . .. . ... . .. . . . . . . . . . . . . . ... . . . .. .. ... .. .. . ... ... . . . . . .... .. . ... .. . . .. .. .... . .... . .. . .. . . .
lowQualScore : 0 0 0 7777777777777777777777 7 7 7 7 7 4 7 7 4 77777 7 7 1 7 333 4 111 7 7 77 3 7 7 0 44 0 0 00000 0 8 7 7 22 2 7 7 5 7 999 0 0 000 1 0 44444 22 0 44444444 88 0 1 1 111111111 1 2222 44 0 0 1 000 6 6 6 00 9999 3 66 7 222 3 22 3 3 3 3 1 3 3 3 6 9 6 6 6 000 6 6 3 00 88 222 11 55 8 666 222 0 0 0 0 6 7777 00 6 888 00 6 6 00 00 7777 6 7777 6 66 6 00 6 6 6
consensus : TAACAAG-CA-T-TGATTTTAA----TTATTA--A----TTAATGTAC-GTAC-TGCAACTAT-TA-ATTTCCA-CTT-G-AA---T-TTTG-AAAG-T-C-ATC--GTGG-T-ACAG-G-CATGTA-CACG-T-AGAACCAC-GCCATGGTGCTCTTGCTCTCTCTCTCCCGACCTCTNTTTTTTTAACTATA-T-GGACATTTTCTGT--TATTT-A-CACGTGTATTT-AC-A-CNTTGGA-TGA--CAGATATC-C--GC-CCACTA-CATANAT-----T--TTN-AGATGAATTGAATG-ACTGTA------TAGCATTGAAATAAAG---TTTAT-A-AATC---TCTG-C-GC-GTCG--TC--A-AA-GC--GTCGGGTTT-C-GCGCGGT-A--TCCA-T-GTT-CATTT-GCA-CG-ACT-TCATGC-ACTAAAGAG-TTCCACT-ACGACTTACG-ACAAG---ACAA-CG-TTACG-ACCTA--CGA-TTA--CGAT-GG--GTTTTGTAAAAC-GGTCCT--ACGA-T-ATG-TCG-TAAG-TTC----TT--CAA-TTCT-ACGA--CTT-AC-GA--TTT--A----A-GACTT----ACGA-C--TTTT-TG--T-AA-AA-CGCTGC
Reference ( family-6334 ) : TAACAAG-CA-T-TGATTTTAA----TTATTA--A----TTAATGTAC-GTAC-TGCAACTAT-TA-ATTTCCA-CTT-G-AA---T-TTTG-AAAG-T-C-ATC--GTGG-T-ACAG-G-CATGTA-CACG-T-AGAACCAC-GCCATGGTGCTCTTGCTCTCTCTCTCCCGACCTCTNTTTTTTTAACTATA-T-GGACATTTTCTGT--TATTT-A-CACGTGTATTT-AC-A-CNTTGGA-TGA--CAGATATC-C--GC-CCACTA-CATANAT-----T--TTN-AGATGAATTGAATG-ACTGTA------TAGCATTGAAATAAAG---TTTAT-A-AATC---TCTG-C-GC-GTCG--TC--A-AA-GC--GTCGGGTTT-C-GCGCGGT-A--TCCA-T-GTT-CATTT-GCA-CG-ACT-TCATGC-ACTAAAGAG-TTCCACT-ACGACTTACG-ACAAG---ACAA-CG-TTACG-ACCTA--CGA-TTA--CGAT-GG--GTTTTGTAAAAC-GGTCCT--ACGA-T-ATG-TCG-TAAG-TTC----TT--CAA-TTCT-ACGA--CTT-AC-GA--TTT--A----A-GACTT----ACGA-C--TTTT-TG--T-AA-AA-CGCTGC
gi|1 : GTAC-AAGC-TTCAACTAT-GAGAATTACA-CTTTG-AAAATT-TTTG-AAAG-T-C-ATT--GGGG-T-ACAG-GGCATGTAACAAG-T-AGAACCA--GCCGTG-TGCTCTT-CTCTCTCTCTTTC-----CTGTTTTTTTAACTA-A-T-GAA-ATTTCTTGT--TATTTCA-CAC-TGTTTTA-ACTATCTTTGGA-TGAACCCGATATC-C--ACGCCAC-A--ATAAAT-----T--TTA-AGATGAATTGAATGCACTG-A------TAGCAT-GAAATAAAT---TTTAT-A-AATC---TCTA-C-GCCGTCG--TC--C-CA-GC--GTCGG-TTT-CAGCGCTGT-AAATCAC-T-GT--CATTTTGTAACGGACT-TCATGT-AC-AAAGAGGTTCCACT-ACGACTTACG-ACAAGGGCATAC-CG-TTACGCACCAT--CGA-CTA--CGATAAG--GTTTTGT-AAAC-GGTCCT--ACGATT-ATG-TCGTTAAGCTTC----TC--AAA-TTCTAACGAACCTT-AC-GAAGTTT--AAAGCA-AACTTCGACGCGA-CGTTTTT-TG--T-AATAATCGCTGC
gi|10 : aaaaagcatctgaattttaaatatagaaattagcgaacccttcttgtaggctcggtacaa---TTTG-C-AC-GTCAAATT--A-AA-GC--GTCGGGTTT---GCGTGGT-A--TCCA-T-ATT-CATTT--TA-AA-ACT-TCATGC-ACTGAAGAG-TTCCACT-ACGACTTACT-ACAAA---ATAA-CG-TTACG-ATCTATACGA-TTA--TGAA-GG--GTTTTGTAAAA------------------TG-CCG-TAAG-GTA----TT--CAA-TT----------TT-AC-GA--TTT--A----A-GACTT----AGAA-C--GTTT-TG--T-AA-AA-TGCTGcc
gi|11 : tcg---TTTG-C-AC-GTCAAATT--A-AA-GC--GTCGG--TT-T-GCGTGGT-A--TCCA-T-ATT-CATTT--TA-AA-ACT-TCATGC-ACTGAAGAG-T-CCACT-ACGACTTACT-ACAAA---ATAA-CG-TTACG-ATCTATACGA-T-A--TGAA-GG--GTTTTGTAAAA------------------TG-CCG-TAAG-GTA----T---CAA-TTTT-ACGA--------------TT--A----A-GACTT----AGAA-C--GTTT--G--T-AA-AA-TGCTG
gi|12 : tcgTTGGA-TGA--CAGCTCCC-CT-AC-TTACTA-TTTATAT-----TG-TTT-AGAAGGATGGAATG-AC--------------ATTGAAATAAA--------T-A-A-------CTG-C-GT-GTCT--TT--C-AA-GC--ATCGG-TTT-C-ATGCGGC-A--TTTA-T-GTT-CATTT-GAA-CA-ACC-TCATGC-ATTGAGAAT-TTCCTCT-ATGACATATG-ACAA----ATGA-AG-TTACG-ACCTA--C
gi|13 : taTAACAAGTCA-TATGATCT--A----TTATTA--A----T-ATTGAAC-GTACCTGCAATTAT-TA-ATTTCCA-CTT-GGAA---T-TTTG-AAAG-T-CCATC--GTGT-A-ACAG-G-CATGTA-CACG-TAAGAAACACAGCCATGca
gi|14 : cacgCAAG-CA-T-TGATTTT--------------------TAATGTAC-GTAC-TGCAATTAT-TA-ATTTCCA-CTT-G-AA-----GTTG-AAAG-T-C-ATC--GTGGTT-ACAGCG-CATGT--CACGTT-AGAA-CAC-GCCATGGTGC
gi|15 : g--A----TTAAT-TACCATAC-TGCAACTAT-TA-ATTTTCACCCT-GTAA---TCTTTG-TAAGTT-C-ATT--G-GC-T-ACA--A-TGTGTA-CAGG-C-A-AATCAC-
gi|16 : atcattaaactccAAG-TTC----TT--CAA-TTCC-ACGA--CTT-AC-GA--TTTAAA----A-GACTT----ACGA-C--TTTT-TG--T-AA-AA-cagtcacca
gi|17 : cC--A-AA-GC--GTCGGGTTT-C-GCGCGGT-A--TCCA-T-GCT-CATTT-GCA-CG-ACT-TTAT
gi|2 : TAACAAG-CA-T-TGATTTTAAAATATTATTATAAGCCCTTAATGTAC-ATAC-TGCAACTAT-TA-ATTTTCA-CTT-G-AA---T-TTTG-GAAG-TAC-ATT--GTGG-T-ACAG-G-CATGTA-CACG-T-AGAACCAC-ACCATG-TGCTCTTGCTCTCTCTCTCCCGACCTTTTTTTTTTTAACTATA-T-GGACATTTTCTGT--TATTT-A-CACGTGTATTT-AC-A-CTTTGGA-TGA--CAGATATC-C--GC-TCACTA-TATATAT-----T--TTCTAGATGAATTGAATG-ACTGTACGAGTGTAGCATTGAAATAAAG---TTTAT-A-AATC---TCTG-C-GC-GTTG--TC--A-AA-GC--GTCGGGTTT-C-GCGCGGT-A--TCCA-T-GTT-CATTT-GCA-CG-ACT-TTATGC-ACTAAAGAG-TTCCACT-ACGACTTACG-ACAAG---ACAA-CG-TTACG-ACCTA--CGA-TTA--CGAT-GT--GTTTTGTAAAAC-GGTCCT--ACGA-T-ATG-TCG-TAAG-TTC----TT--CAA-TT----------TT-AC-GA--TTT--A----A-GACTT----ATGA-C--TTTT-TG--T-AA-AA-CGCTGC
gi|3 : TAACAAG-CAAT-TGATTTTA------------------TTAATGTAC-GTA---------AT-TA-ATTTCCA-CTT-G-AA---T-TTTG-AAAG-TGC-ATT--GTGG-T-ACAG-G-CATGTA--ACG-T-AGAACCAG-GCCAT-GTGCTC
gi|3 : ccgTTAACTATAAT-GAACATTTTCTGT--TATTT-A-CACGTGTATTT-AC-A-CGT---------------------------ACTAACATAAAT-----T--TT--AGATGAATTGAATG-ACTGTA-------AGCATTGAAATAAAG---TTTTTAA-AATC---TCTA-C-GC-GTCG--TC--C-AA-GC--GTCGGGTTT-C-GCGCTGT-A--TCCACT-GTT-CGTTT-GTA-CG-ACT-TCA-GC-ACCAAAGAG-TTCCACT-ACGACTTACG-ACAAG---GCAA-CG-TTACG-A-CTA--CGA-TTA--CGAT-AG--GTTTTGT-AAAC-GGTCCT--ACGA-T-ATG-TCG-TAAG-TTC----TT---AA-TTCT-ATGA--CTT-AC-GA--TTT--A----A-GACTT----ACG--C--TTTT-TG--T-AA-AA-CGCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaactataatgaacattttctgttatttacacgtgtatttacacgtactaacataaattttagatgaattgaatgactgtaagcattgaaataaagtttttaaaatctctacgcgtcgtccaagcgtcgggtttcgcgctgtatccactgttcgtttgtacgacttcagcaccaaagagttccactacgacttacgacaaggcaacgttacgactacgattacgataggttttgtaaacggtcctacgatatgtcgtaagttcttaattctatgacttacgatttaagacttacgctttttgtaaaacgctg
gi|4 : ccgtaacaagcaattgattttattaatgtacgtaattaatttccacttgaattttgaaagtgcattgtggtacaggcatgtaacgtagaaccaggccatgtgctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTATA-TCGAACATTTTCTGTATTAATT-A-CACGT-TATTT-AC-A-TCTTTGA-TTA--CAGA-ATCTC--ACGTTACTA-CATAAAT-----T--TTA-AACTGAATTGAATA----GTG------TAGCATTGAAATAAAG---TT-AT-A-AATCGCATCTA-C-GC-GTTG--TC--CCAA-GC--GTCGGGTTC-C-GCGCTGT-AAATCCA-T-GTT-CATTT-GTA-CG-ACT-TCATGC-ACCAAAGAG-TTCCAC--ACGACTTACG-ACATGC--GCAA-CGTTTACGAACCTA--CG----------T-AG--G-TTTGTAAAAC-GGTCCTCAACGC-T-ATGTTCG-TAAG-T------TT--CAA-TTCT-ACGA--CTTAACAGA--TTT--A----AGGACTT----ACGA-C--TTTC-TG--TAAA-AA-CGCTGC
gi|5 : tttgattTTTTTTTA-CTATA-T-GGAC-TTTTCTGT--TCTTT-ATCACGTGCATTT-AA-C-CTTTGGA-TG---CAGATATC-C---C-CCACTA-CATAAAT-----T--TT---GAT--ATTGAATG-ACTGTA--------GCATTGAAATAAAGG--TTTAT-A-AAT----TCTA-CAGC-GTCG--TCGCA-AT-GCTGGTCGGGTTTTC-GCGCTGTTA--TCCA-TTGTTATGTTT-GTA-CG-ACT-TCATGC--CCAAAGA--TTTCACT-ACGACTTACG--CAAG---GCAAGCG-T-ACG----TA--C-A-TTAAACGTT-GGAGGTTTTGTAA--CTGGTCC---ACGA-T-ATG-TCT-TAAG-TTC----TTATCAAATTCT-AGCA--CTT-AC-GA--TTT--A----A-GACTT----ACGA-CT-TTTT-TG--T-AA-GA-AGCTG
gi|6 : TTTTAATTATA-T-GGACATTTTCTGT--G---T-A-CA--TGTATTT-GC-A-CATTGGA-TGA--CAGATATC-C--GC-CCACTA-TATATACATGTAT--TTT-AGATGAATTGAATG-ACTGTA--------ACATTGAAAT------------------C---TCTG-C-TC-GTCG--TC--A-AA-GC--GTCAGGTTT-C-ACGCGGT-A--TCCA-T-GTT-CATTT-GCA-CT-ATT-TCATGC-ACTAAAGAG-TTCCACT-ACGACTTACG-ACAAG---ACAA-CA-TTACG-ACCTA--CGA-TTA--CGAT-GG--GTTTTGTAAAAC-TGTCCT--ACGA-T-ATG-TCG-TAAG-TTC----TT--CAA-TTTT-ATGA--CTT-AC-GA--TTT--A----A-GACTT----ACAA-C--TTTT-TG--T-AA-AA-CGCTGC
gi|7 : TATTTCAC-A-CAATAGAATGA--AGGATATC-CTAAC-CCACTA-TA-ATAT-----TATTTC-ACGTGAATTGA-TG-ACT-TA------TA-CATTGAA-TA--GCCTTTTAT-ATAATC---GCTGTC-GC-GTCG--TC--A-AAAGC--GTCGG-TTT-C-GC-CGGT-A--TCCA-T--CT-CATTT-GCA-CG-ACTAT--TGCTACTAAAG-T-TTCCCCTGAC-ACTTACGGATAAG---ACAA-C--TTAC--ACCTA--CA---TA---GAT-GT--GTTTT-TAAA-C---TCCT--ACGA-TTATG-TCG-TAAG-TTTCTGTTT--CAA-TTTT-ACGA--CTT-AT--A--TTT--A----A-GAC-T----ACGA-C--TTTTATGGTT-AA-AA-CGCTGCc
gi|8 : tcCTG-C-GC-GTTG--GC--A-AA-GC--AACTGGTTT-A-GCATGGT-A--TCCA-T-GTT-CATTT-GCA-CA-TCT-TCATGT-ACCAAAGAG-TTCCACT-ATGACTTGCA-ACAAG---GCGG-TG-TTAAG-ACCTA--AGACCTA--CGA-------TTACGTACAAA-AATCCT--ACGA-T-ATG-TCG-TAAG-TTC----TT--CAT-TTCT-ACAA--CAT-AC-GA--TTT--A----A-GATTT----AAGATT--TTTT-TG--T-AA-AG-CACTGCca
gi|9 : TAACAG---A-T-TGCTTTTGA----TTAT--------------GTAC-GTAC-TG-AACTCTGTA-ATTTTCA-ATT-G-AA---T-TTTGAAAAG-TGC-ATTGGGTGG-TAACAG-G-CATGT--CA-G-T-AG--CC-C-GCCATGGTGCACT
blockSeqs : . A . TAAAATATTATTATAAGCCCTT C C G . C . G TC A T A C TGG T TT C . A C T A A CA G G GACCT T A C AT A . T G C A T A A T TAAC AC T ATGTAT CT . CGAGTGTAG GCCT TA A T GCA T A . AA GCA A TG G TC T AA C T A . . . A T . G G C G T A TA AC AAC A AG CTG TCA . T T . . CTGT AT A TT . A A . AA . G . T T A GT A . .
blockSeqs : . . . TGATTAT . . . . . . T T . . G . C T TA . . A C . . T C G . . . A . . G . A G . A . TAC T T TAT T . TAG GG TT . . . . . . AA CC . . G T . . . . . . . . . . . . . . . . . TA A T A . CG T . . . . . . . . CC . . . . . . . . . . . . . . .
blockSeqs : . . . TATT . . . . . . . T . . G . C T A . . A G . . C C G . . . A . . G . A C . A . ACG T A TG A . AG G TA . . . . . . . A . . G C . . . . . . . . . . . . . . . . . . A T T . CG T . . . . . . . . CT . . . . . . . . . . . . . . .
blockSeqs : . . . TT . . . . . . . T . . . . T T T . . A C . . C C . . . . C . . G . C T . A . GC C A T T . TA G TA . . . . . . . A . . G C . . . . . . . . . . . . . . . . . . A C T . CG T . . . . . . . . CT . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . T T T . . . C . . C G . . . . . . . . A A . A . GC C A T C . G G A . . . . . . . C . . G C . . . . . . . . . . . . . . . . . . A C T . CT T . . . . . . . . CT . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . T . T . . . . . . . C . A A . . . C T T T . . A . . . . . . . . . A . . G C . . . . . . . . . . . . . . . . . . A C T . AA T . . . . . . . . TT . . . . . . . . . . . . . . .
blockSeqs : . . . . T T T . . . . . . . . . . . . A . . G C . . . . . . . . . . . . . . . . . . A C T . C . . . . . . . . . TT . . . . . . . . . . . . . . .
blockSeqs : . . . . . C . . G C . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . CT . . . . . . . . . . . . . . .
blockSeqs : . . . . . A . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . A . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : A . . . . . . . . . . . . .
blockSeqCons : TATT****************** T**** A* C* A** A** AC*** T* AG******* C** ** *** T* CT* ** ** **** **** **
originalCons : TAACAAG-CA-T-TGATTTTAA----TTATTA--A----TTAATGTAC-GTAC-TGCAACTAT-TA-ATTTCCA-CTT-G-AA---T-TTTG-AAAG-T-C-ATC--GTGG-T-ACAG-G-CATGTA-CACG-T-AGAACCAC-GCCATGGTGCTCTTGCTCTCTCTCTCCCGACCTCTNTTTTTTTAACTATA-T-GGACATTTTCTGT--TATTT-A-CACGTGTATTT-AC-A-CNTTGGA-TGA--CAGATATC-C--GC-CCACTA-CATANAT-----T--TTN-AGATGAATTGAATG-ACTGTA------TAGCATTGAAATAAAG---TTTAT-A-AATC---TCTG-C-GC-GTCG--TC--A-AA-GC--GTCGGGTTT-C-GCGCGGT-A--TCCA-T-GTT-CATTT-GCA-CG-ACT-TCATGC-ACTAAAGAG-TTCCACT-ACGACTTACG-ACAAG---ACAA-CG-TTACG-ACCTA--CGA-TTA--CGAT-GG--GTTTTGTAAAAC-GGTCCT--ACGA-T-ATG-TCG-TAAG-TTC----TT--CAA-TTCT-ACGA--CTT-AC-GA--TTT--A----A-GACTT----ACGA-C--TTTT-TG--T-AA-AA-CGCTGC
finalCons : TAACAAG-CA-T-TGATTTTATT------------------AATGTAC-GTAC-TGCAACTAT-TA-ATTTCCA-CTT-G-AAT----TTTG-AAAG-T-C-ATC--GTGG-T-ACAG-G-CATGTA-CACG-T-AGAACCAC-GCCATGGTGCTCTTGCTCTCTCTCTCCCGACCTCTNTTTTTTTAACTATA-T-GGACATTTTCTGT--TATTT-A-CACGTGTATTT-ACA--CNTTGGA-TGA--CAGATATC-CAC---CCACTAT-ATANAT-----T--TTN-AGATGAATTGAATG-ACTGTAAG-------CATTGAAATAAAG---TTTAT-A-AATC---TCTG-C-GC-GTCG--TC--A-AA-GC--GTCGGGTTTC--GCGCGGT-A--TCCA-T-GTT-CATTT-GCA-CG-ACT-TCATGC-ACTAAAGAG-TTCCACT-ACGACTTACG-ACAAG---ACAA-CG-TTACG-ACCTA--CGA-TTA--CGAT-GG--GTTTTGTAAAAC-GGTCCT--ACGA-T-ATG-TCG-TAAG-TTC----TT--CAA-TTCT-ACGA--CTT-AC-GA--TTT--A----A-GACTT----ACGA-C--TTTT-TG--T-AA-AA-CGCTGC
Alignments
lowQualScore : 55555555555555555555555 111 1 11111 2 11 1 1 22222 11111 11111111 11 222222222 1111 11 111 11 111
lowQualScore : 6 6 6 6 77777777777777777777777 000 5 5 0 5 5 0 5 1 5 33333 5 5 2 999 1 666 5 5 00 4 5 5 3 66 0 5 66666 1 0 6 6 99 3 6 6 2 5 555 1 5 777 0 5 88888 77 1 55555555 55 5 777777777 0 6666 33 5 8888888 3 3 3 00 6666 3 44 6 444 3 99 3 3 3 3 0 3 3 3 3 0 3 3 3 000 3 3 7 00 44 666 55 55 0 000 666 4 4 4 4 3 7777 55 3 333 55 3 3 55 55 7777 3 7777 3 88 3 55 3 3 3
lowQualScore : . . . . ....................... ... . . . . . . . . . ..... . . . ... . ... . . .. . . . . .. . . ..... . . . . .. . . . . . ... . . ... . . ..... .. . ........ .. . ......... . .... .. . ....... . . . .. .... . .. . ... . .. . . . . . . . . . . . . . ... . . . .. .. ... .. .. . ... ... . . . . . .... .. . ... .. . . .. .. .... . .... . .. . .. . . .
lowQualScore : 7 7 7 7 77777777777777777777777 000 7 7 7 7 7 4 7 4 7 77777 7 7 9 333 4 111 7 7 77 3 7 7 0 44 0 0 00000 0 8 7 7 22 2 7 7 5 7 999 0 0 000 1 0 99999 88 0 44444444 88 0 111111111 1 2222 44 0 5555555 6 6 6 00 9999 3 66 7 222 3 22 3 3 3 3 1 3 3 3 6 9 6 6 6 000 6 6 3 00 88 222 11 55 8 666 222 0 0 0 0 6 7777 00 6 888 00 6 6 00 00 7777 6 7777 6 66 6 00 6 6 6
consensus : TAACAAG-CA-T-TGA-TTT--T-A------------------TTAATGT---AC-GTAC-TGCAACTAT-TA-ATTTCCA-CTT-G-AA---T-TTTG-AAAG-T-CATC--GTGG-T-ACAG-G-CATGTA-CACG-T-AGAACCAC-GCCATGGTGCTCTTGCTCTCTCTCTCCCGACCTCTNTTTTTTTAACTATA-T-GGACATTTTCTGT--TATTT-A-CACGTGTATTT-AC-A-CNTTGGA-TGA--CAGATATC-C--GC-CCACTA-CATANAT-----T--TTN-AGATGAATTGAATG-ACTGTA-------AGCATTGAAATAAAG---TTTATA-AA-TC---TCTG-C-GC-GTCG--TC--A-AA-GC--GTCGGGTTT-C-GCGCGGT-A--TCCA-T-GTT-CATTT-GCA-CG-ACT-TCATGC-ACTAAAGAG-TTCCACT-ACGACTTACG-ACAAG---ACAA-CG-TTACG-ACCTA--CGA-TTA--CGAT-GG--GTTTTGTAAAAC-GGTCCT--ACGA-T-ATG-TCG-TAAG-TTC----TT--CAA-TTCT-ACGA--CTT-AC-GA--TTT--A----A-GACTT----ACGA-C--TTTT-TG--T-AA-AA-CGCTGC
Reference ( family-6334 ) : TAACAAG-CA-T-TGA-TTT--T-A------------------TTAATGT---AC-GTAC-TGCAACTAT-TA-ATTTCCA-CTT-G-AA---T-TTTG-AAAG-T-CATC--GTGG-T-ACAG-G-CATGTA-CACG-T-AGAACCAC-GCCATGGTGCTCTTGCTCTCTCTCTCCCGACCTCTNTTTTTTTAACTATA-T-GGACATTTTCTGT--TATTT-A-CACGTGTATTT-AC-A-CNTTGGA-TGA--CAGATATC-C--AC-CCACTA-TATANAT-----T--TTN-AGATGAATTGAATG-ACTGTA-------AGCATTGAAATAAAG---TTTATA-AA-TC---TCTG-C-GC-GTCG--TC--A-AA-GC--GTCGGGTTT-C-GCGCGGT-A--TCCA-T-GTT-CATTT-GCA-CG-ACT-TCATGC-ACTAAAGAG-TTCCACT-ACGACTTACG-ACAAG---ACAA-CG-TTACG-ACCTA--CGA-TTA--CGAT-GG--GTTTTGTAAAAC-GGTCCT--ACGA-T-ATG-TCG-TAAG-TTC----TT--CAA-TTCT-ACGA--CTT-AC-GA--TTT--A----A-GACTT----ACGA-C--TTTT-TG--T-AA-AA-CGCTGC
gi|1 : GT---AC-AAGC-TTCAACTAT-GAGAATTACA-CTTTG-AAAATT-TTTG-AAAG-T-CATT--GGGG-T-ACAG-GGCATGTAACAAG-T-AGAACCA--GCCGTG-TGCTCTT-CTCTCTCTCTTTC-----CTGTTTTTTTAACTA-A-T-GAA-ATTTCTTGT--TATTTCA-CAC-TGTTTTA-ACTATCTTTGGA-TGAACCCGATATC-C--ACGCCAC-A--ATAAAT-----T--TTA-AGATGAATTGAATGCACTGAT-------AGCAT-GAAATAAAT---TTTATA-AA-TC---TCTA-C-GCCGTCG--TC--C-CA-GC--GTCGG-TTT-CAGCGCTGT-AAATCAC-T-GT--CATTTTGTAACGGACT-TCATGT-AC-AAAGAGGTTCCACT-ACGACTTACG-ACAAGGGCATAC-CG-TTACGCACCAT--CGA-CTA--CGATAAG--GTTTTGT-AAAC-GGTCCT--ACGATT-ATG-TCGTTAAGCTTC----TC--AAA-TTCTAACGAACCTT-AC-GAAGTTT--AAAGCA-AACTTCGACGCGA-CGTTTTT-TG--T-AATAATCGCTGC
gi|10 : aaaaagcatctgaattttaaatatagaaattagcgaacccttcttgtaggctcggtacaa---TTTG-C-AC-GTCAAATT--A-AA-GC--GTCGGGTTT---GCGTGGT-A--TCCA-T-ATT-CATTT--TA-AA-ACT-TCATGC-ACTGAAGAG-TTCCACT-ACGACTTACT-ACAAA---ATAA-CG-TTACG-ATCTATACGA-TTA--TGAA-GG--GTTTTGTAAAA------------------TG-CCG-TAAG-GTA----TT--CAA-TT----------TT-AC-GA--TTT--A----A-GACTT----AGAA-C--GTTT-TG--T-AA-AA-TGCTGcc
gi|11 : tcg---TTTG-C-AC-GTCAAATT--A-AA-GC--GTCGG--TT-T-GCGTGGT-A--TCCA-T-ATT-CATTT--TA-AA-ACT-TCATGC-ACTGAAGAG-T-CCACT-ACGACTTACT-ACAAA---ATAA-CG-TTACG-ATCTATACGA-T-A--TGAA-GG--GTTTTGTAAAA------------------TG-CCG-TAAG-GTA----T---CAA-TTTT-ACGA--------------TT--A----A-GACTT----AGAA-C--GTTT--G--T-AA-AA-TGCTG
gi|12 : tcgTTGGA-TGA--CAGCTCCC-CT-AC-TTACTA-TTTATAT-----TG-TTT-AGAAGGATGGAATG-AC--------------ATTGAAATAAA--------TA-A--------CTG-C-GT-GTCT--TT--C-AA-GC--ATCGG-TTT-C-ATGCGGC-A--TTTA-T-GTT-CATTT-GAA-CA-ACC-TCATGC-ATTGAGAAT-TTCCTCT-ATGACATATG-ACAA----ATGA-AG-TTACG-ACCTA--C
gi|13 : taTAACAAGTCA-TATGA-TCTATT-A------------------TTAATATTGAAC-GTACCTGCAATTAT-TA-ATTTCCA-CTTGG-AA---T-TTTG-AAAG-TCCATC--GTGT-A-ACAG-G-CATGTA-CACG-TAAGAAACACAGCCATGca
gi|14 : cacgCAAG-CA-T-TGA-TTT--T---------------------TAATGT---AC-GTAC-TGCAATTAT-TA-ATTTCCA-CTT-G-AA-----GTTG-AAAG-T-CATC--GTGGTT-ACAGCG-CATGT--CACGTT-AGAA-CAC-GCCATGGTGC
gi|15 : g-CA-T-TAAACTC--C-A------------------TTAAT-T---ACCATAC-TGCAACTAT-TA-ATTTTCACCCT-GTAA---TCTTTG-TAAGTT-CATT--G-GC-T-ACA--A-TGTGTA-CAGG-C-A-AATCAC-
gi|16 : atAAG-TTC----TT--CAA-TTCC-ACGA--CTT-AC-GA--TTTAAA----A-GACTT----ACGA-C--TTTT-TG--T-AA-AA-cagtcacca
gi|17 : cC--A-AA-GC--GTCGGGTTT-C-GCGCGGT-A--TCCA-T-GCT-CATTT-GCA-CG-ACT-TTAT
gi|2 : TAACAAG-CA-T-TGA-TTT--T-AAAATATTATTATAAGCCCTTAATGT---AC-ATAC-TGCAACTAT-TA-ATTTTCA-CTT-G-AA---T-TTTG-GAAG-TACATT--GTGG-T-ACAG-G-CATGTA-CACG-T-AGAACCAC-ACCATG-TGCTCTTGCTCTCTCTCTCCCGACCTTTTTTTTTTTAACTATA-T-GGACATTTTCTGT--TATTT-A-CACGTGTATTT-AC-A-CTTTGGA-TGA--CAGATATC-C--GC-TCACTA-TATATAT-----T--TTCTAGATGAATTGAATG-ACTGTACGAGTGTAGCATTGAAATAAAG---TTTATA-AA-TC---TCTG-C-GC-GTTG--TC--A-AA-GC--GTCGGGTTT-C-GCGCGGT-A--TCCA-T-GTT-CATTT-GCA-CG-ACT-TTATGC-ACTAAAGAG-TTCCACT-ACGACTTACG-ACAAG---ACAA-CG-TTACG-ACCTA--CGA-TTA--CGAT-GT--GTTTTGTAAAAC-GGTCCT--ACGA-T-ATG-TCG-TAAG-TTC----TT--CAA-TT----------TT-AC-GA--TTT--A----A-GACTT----ATGA-C--TTTT-TG--T-AA-AA-CGCTGC
gi|3 : TAACAAG-CAAT-TGA-TTT--T-A------------------TTAATGT---AC-GTA---------AT-TA-ATTTCCA-CTT-G-AA---T-TTTG-AAAG-TGCATT--GTGG-T-ACAG-G-CATGTA--ACG-T-AGAACCAG-GCCAT-GTGCTC
gi|3 : ccgTTAACTATAAT-GAACATTTTCTGT--TATTT-A-CACGTGTATTT-AC-A-CGT---------------------------ACTAACATAAAT-----T--TT--AGATGAATTGAATG-ACTGTA-------AGCATTGAAATAAAG---TTTTTA-AAATC---TCTA-C-GC-GTCG--TC--C-AA-GC--GTCGGGTTT-C-GCGCTGT-A--TCCACT-GTT-CGTTT-GTA-CG-ACT-TCA-GC-ACCAAAGAG-TTCCACT-ACGACTTACG-ACAAG---GCAA-CG-TTACG-A-CTA--CGA-TTA--CGAT-AG--GTTTTGT-AAAC-GGTCCT--ACGA-T-ATG-TCG-TAAG-TTC----TT---AA-TTCT-ATGA--CTT-AC-GA--TTT--A----A-GACTT----ACG--C--TTTT-TG--T-AA-AA-CGCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaactataatgaacattttctgttatttacacgtgtatttacacgtactaacataaattttagatgaattgaatgactgtaagcattgaaataaagtttttaaaatctctacgcgtcgtccaagcgtcgggtttcgcgctgtatccactgttcgtttgtacgacttcagcaccaaagagttccactacgacttacgacaaggcaacgttacgactacgattacgataggttttgtaaacggtcctacgatatgtcgtaagttcttaattctatgacttacgatttaagacttacgctttttgtaaaacgctg
gi|4 : ccgtaacaagcaattgattttattaatgtacgtaattaatttccacttgaattttgaaagtgcattgtggtacaggcatgtaacgtagaaccaggccatgtgctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTATA-TCGAACATTTTCTGTATTAATT-A-CACGT-TATTT-AC-A-TCTTTGA-TTA--CAGA-ATCTC--ACGTTACTA-CATAAAT-----T--TTA-AACTGAATTGAAT--AGTGTA--------GCATTGAAATAAAG---TT-ATA-AA-TCGCATCTA-C-GC-GTTG--TC--CCAA-GC--GTCGGGTTC-C-GCGCTGT-AAATCCA-T-GTT-CATTT-GTA-CG-ACT-TCATGC-ACCAAAGAG-TTCCAC--ACGACTTACG-ACATGC--GCAA-CGTTTACGAACCTA--CG----------T-AG--G-TTTGTAAAAC-GGTCCTCAACGC-T-ATGTTCG-TAAG-T------TT--CAA-TTCT-ACGA--CTTAACAGA--TTT--A----AGGACTT----ACGA-C--TTTC-TG--TAAA-AA-CGCTGC
gi|5 : tttgattTTTTTTTA-CTATA-T-GGAC-TTTTCTGT--TCTTT-ATCACGTGCATTT-AA-C-CTTTGGA-TG---CAGATATC-C---C-CCACTA-CATAAAT-----T--TT---GAT--ATTGAATG-ACTGTA--------GCATTGAAATAAAGG--TTTATA-AA-T----TCTA-CAGC-GTCG--TCGCA-AT-GCTGGTCGGGTTTTC-GCGCTGTTA--TCCA-TTGTTATGTTT-GTA-CG-ACT-TCATGC--CCAAAGA--TTTCACT-ACGACTTACG--CAAG---GCAAGCG-T-ACG----TA--C-A-TTAAACGTT-GGAGGTTTTGTAA--CTGGTCC---ACGA-T-ATG-TCT-TAAG-TTC----TTATCAAATTCT-AGCA--CTT-AC-GA--TTT--A----A-GACTT----ACGA-CT-TTTT-TG--T-AA-GA-AGCTG
gi|6 : TTTTAATTATA-T-GGACATTTTCTGT--G---T-A-CA--TGTATTT-GC-A-CATTGGA-TGA--CAGATATC-C--GC-CCACTA-TATATACATGTAT--TTT-AGATGAATTGAATG-ACTGTA-------A-CATTGAAAT------------------C---TCTG-C-TC-GTCG--TC--A-AA-GC--GTCAGGTTT-C-ACGCGGT-A--TCCA-T-GTT-CATTT-GCA-CT-ATT-TCATGC-ACTAAAGAG-TTCCACT-ACGACTTACG-ACAAG---ACAA-CA-TTACG-ACCTA--CGA-TTA--CGAT-GG--GTTTTGTAAAAC-TGTCCT--ACGA-T-ATG-TCG-TAAG-TTC----TT--CAA-TTTT-ATGA--CTT-AC-GA--TTT--A----A-GACTT----ACAA-C--TTTT-TG--T-AA-AA-CGCTGC
gi|7 : TATTTCAC-A-CAATAGAATGA--AGGATATC-CTAAC-CCACTA-TA-ATAT-----TATTTC-ACGTGAATTGA-TG-ACT-TA-------TACATTGAA-TA--GCCTTTTATATAA-TC---GCTGTC-GC-GTCG--TC--A-AAAGC--GTCGG-TTT-C-GC-CGGT-A--TCCA-T--CT-CATTT-GCA-CG-ACTAT--TGCTACTAAAG-T-TTCCCCTGAC-ACTTACGGATAAG---ACAA-C--TTAC--ACCTA--CA---TA---GAT-GT--GTTTT-TAAA-C---TCCT--ACGA-TTATG-TCG-TAAG-TTTCTGTTT--CAA-TTTT-ACGA--CTT-AT--A--TTT--A----A-GAC-T----ACGA-C--TTTTATGGTT-AA-AA-CGCTGCc
gi|8 : tcCTG-C-GC-GTTG--GC--A-AA-GC--AACTGGTTT-A-GCATGGT-A--TCCA-T-GTT-CATTT-GCA-CA-TCT-TCATGT-ACCAAAGAG-TTCCACT-ATGACTTGCA-ACAAG---GCGG-TG-TTAAG-ACCTA--AGACCTA--CGA-------TTACGTACAAA-AATCCT--ACGA-T-ATG-TCG-TAAG-TTC----TT--CAT-TTCT-ACAA--CAT-AC-GA--TTT--A----A-GATTT----AAGATT--TTTT-TG--T-AA-AG-CACTGCca
gi|9 : TAACAG---A-T-TGC-TTT--TGA------------------TTA-TGT---AC-GTAC-TG-AACTCTGTA-ATTTTCA-ATT-G-AA---T-TTTGAAAAG-TGCATTGGGTGG-TAACAG-G-CATGT--CA-G-T-AG--CC-C-GCCATGGTGCACT