lowQualScore : 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111 1111111111111111111111
lowQualScore : 4444444444444444 3333333333 1 5555555555555555555555 22222 1 4444444444 33333 3 2222 55555555555555555 2222222222222 888888888888888888 1 22222 1 1 11 44444444 33333 11 33 5555555555 22 333333 2222 22 666666666666666666 555555 1 1 1 6666666666666666666666666666666 1 222 22222 333333333 1 222 5555555 222 2 2 22 2 333 2 44 222 11 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2222222 22222222222222222222222222222222 444444444444444444444444444444444 444444444444444444444444444444444 11 11111 222222222222222222 8888888888888888888888888888888888888888888888888888888888 222222222 11111 1111 4444444444444444444444444444444 11 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111 33333 7777777777777777777777777777777777 11 22222 111111111111111111111111111111111111111111111111111111111111 2222 33333333333333333333333333333333333333 6666666666666666666666666666666666666666 11111 33 22222 444444444444444 22222222 1 333 33 2 1 5555555555555555555555 1
lowQualScore : 6666666666666666 5555555555 0 4 0000000000000000000000 88888 5 0 4444444444 11111 4 5 2222 77 33333333333333333 1 6666666666666 6 888888888888888888 22 4 0 33333 0 0 88 55555555 11111 44 00 4 8888888888 7 1 00 111111 1111 88 111111111111111111 444444 3 3 7 5555555555555555555555555555555 3 666 3 7 33333 333333333 0 666 2222222 444 0 2 0 77 0 555 0 22 666 88 88 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 5555555 2 66 00000000000000000000000000000000 7777 5 444 0 6 777777777777777777777777777777777 333 000000000000000000000000000000000 1 0 2 4444 2 2 4444 22 4 55555 33 555555555555555555 0000000000000000000000000000000000000000000000000000000000 2 1 0 3 44 555555555 4 2 55555 99999 22 88 2 4444 4444444444444444444444444444444 333 22 1 1 00 1 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 33 2 555 88 777 88888 77777 8 2 1111111111111111111111111111111111 22 8 2 4 7777 2 4 2 55555 2 666666666666666666666666666666666666666666666666666666666666 3333 4 8 55555555555555555555555555555555555555 9999999999999999999999999999999999999999 11111 22 8 1 8 77777 9 666666666666666 1 99 77777777 0 2 666 00 6 1 3 2222222222222222222222 5
lowQualScore : ................ .......... . . ...................... ..... . . .......... ..... . . .... .. ................. . ............. . .................. .. . . ..... . . .. ........ ..... .. .. . .......... . . .. ...... .... .. .................. ...... . . . ............................... . ... . . ..... ......... . ... ....... ... . . . .. . ... . .. ... .. .. ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ....... . .. ................................ .... . ... . . ................................. ... ................................. . . . .... . . .... .. . ..... .. .................. .......................................................... . . . . .. ......... . . ..... ..... .. .. . .... ............................... ... .. . . .. . ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .. . ... .. ... ..... ..... . . .................................. .. . . . .... . . . ..... . ............................................................ .... . . ...................................... ........................................ ..... .. . . . ..... . ............... . .. ........ . . ... .. . . . ...................... .
lowQualScore : 7777777777777777 8888888888 0 0 5555555555555555555555 22222 2 8 3333333333 44444 3 7 3333 99 44444444444444444 4 0000000000000 7 666666666666666666 88 0 0 55555 0 0 55 00000000 77777 00 00 7 3333333333 3 0 00 777777 0000 77 000000000000000000 777777 3 3 0 3333333333333333333333333333333 3 333 7 3 77777 888888888 0 222 4444444 777 0 5 0 55 0 000 0 55 555 55 00 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2222222 9 77 11111111111111111111111111111111 8888 0 444 3 1 999999999999999999999999999999999 777 666666666666666666666666666666666 5 5 1 5555 2 2 7777 44 8 22222 77 555555555555555555 6666666666666666666666666666666666666666666666666666666666 0 8 3 8 55 444444444 0 1 33333 99999 88 99 0 5555 3333333333333333333333333333333 555 66 9 9 22 9 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 99 9 000 66 111 44444 44444 4 2 4444444444444444444444444444444444 88 0 0 2 7777 0 8 2 22222 2 222222222222222222222222222222222222222222222222222222222222 5555 0 0 55555555555555555555555555555555555555 4444444444444444444444444444444444444444 11111 88 9 0 9 99999 8 333333333333333 0 33 77777777 7 0 000 00 7 0 3 0000000000000000000000 0
consensus : ACTCTGAAC-TAA-TATTT--T---TTTGTCTCA-A--T-ATTTTTT-CATNATATC-GA---TCAATTG--------TATTA--A-AGAGATTTGAAATGG-AA-------TATTGACTTTTACACTCTCAAAATGATAAA-AAC--G-GAGTTAATT--T--ATCATAAAGTT---GTTGTTTT---AATCACAT--ATG-AGT--TATCCAGATT----GGAAAGGATNT-GGTTT--AA-TCTA-CGTAT-TCCACAAAAATGG-TCGGCG-AAAGTTGGTATGGAAA-CGTCAACGT-ACCGTTG-ATNATA--ATTGTTT-GCAACTTTTCATC-CATTTT-G----CAAT-T-TTTTTAAATGCTAA-TTACA---G--GCGC--TTGAAATT-G--A-ATAT-ATG-TTTTTGCGTAATGGAAA--CCGG-TCGTA---AT-TA-ACAC-ATA-ACGT-GATT-T-ANATGAAG-GA--TTGAATGA--NCTATGCAATGCA-GCGACCCACT--AATG-CGAAA-G-AAATACTTGCNATGGGGTCATGTTTCTCGGCAAAGGAATTTACAATACTAGNAAAATCNTTTCA--TTTTAANGCCAATGCAGAAATTTATATAACTATTNTCTTTGATTGGTCGNTTNNAGCATGTACCGTANCTCTCTCGCTTGTAGNGAGATCTCTTCT---AANCCGNNCATGCCAACGGNACTGGGTNGCCGTACATCCTCANTGCCGGGGNCCAATACTCGGCAGTAGCA-ACCACCCCGACTTAAATTTCAAGAGGCCAACNNNAGGCAATTACCCAACTCTGTCCCACAAGCCAATCGCCAANGCCTGGC--ATTGGA-CCANTATNNCAAGAGTCANCCAATGCNGACNTTGGGCGACTA--CTGAACGGC-CGA-TGCGGGCGTTNG---ACTANA-AATAT-GATTTCGTCCAATGGCAGGCATTGG--GCCAGTATGGCG---TCATCCAATGCA--------G-C-AT-T-----T--CTA---T---CG--TCC--T-----GCAGGCA-TT-G-GCTA-ACT-ATA----AA--CTGA------------T-C-AAT---GCAGGCATT--------GGAC-CAG-T-TCT---GGC-----GTCGTCCAATGCAGGCA-----ATTGG-GCG-A-CT--A-C-A-A-CT-GAT------------------TC---CAATGC-AGGCATTGG---ACCAGT-TATG-GCGTCGGTCC-ATG---CAG-------GCATT-----G--------GC-A-----------TAAA--CTGATTTCAAT---G-CAGGCA--A--TTG--G--CC-A-G--TATGGC-GTCG-T-C---AATGC-GG--CA-TT-GGN-CGA-C-TA-NAAACTNGATTCA-ATGCA--GGCATTGG---GAC-GAGTTATGGCGTGTC----GT-CCAATGCAGGC-A-T-NGGC-GAC-T-ACGAANCTG-ATTCA-AATGCA-GGCA-T---TGGCCGA---GT----AT--G-CG-TC--NTC------CCAATGC---AGGCATT-GG-----NCGA---CT--A---A---C---AAACT-GA----TTCAATG-C-AGGC----A-TTTGG-AC--CAGT--AT----G-GCGTC--GTCC-AATGCA-GGCATTGGGGCGACTG--T-TA---A-ACTGATTCA------------------AATGCAGGCA-TTGGAC-CAG--T--AT-G-C-G-T-CGTC-----CA--AATG--CNTGCATT-GGG--CGACTATAC-----------A---TA----C----TG-ATCCAA--T-G-CCNGCA-TTGGA----ACC-AGT--A-TG-G-G-C---CG---G-T--G--GTCCAATGCAGGCATT-G----G-CGGA--CTA-C-A----A----CTG-ATTC----A-ATGCA-GGCAT-TGG---A--C-A--G--T--ATG--G-GTCGTCCAATG-C-N-GCCATT---G---------GAA-----GC--GA-TACAA-ACTG--------------------NTT------A-TG--CAGGC----AT--T-GG--GACCAG--TATGGCG-TCGT--CCAATGC-A-GT-GC-AT---T-------CG---G--GC-GA-------ACTA--T-AA-C-TGATTCA-ATGC-A-GGCA---TTGGACC-AGT--ATGGCGT-CGTCCAA-T---GCAGGCATT-G---GGCGA-AC--TACAAA-------NT-G---------ATTCAATG-A-CAG--GC-ATTG---GA-C-A-GTATGGG--CGTCGTCCAATGCAGGCA-----TT-G-G-C-G-AC----------------GTA-AAA-CT-GATTCA-ATGCAGGC-ATT-GGCCN-AGTAT-G-GCA-GTCGT-CCAATGCAGGCA------T-TGG--GA--GTA--ACAA-----TGA--T-----------------ATTC--AATGCAGG--C-ATT-GG----CCG---TGTA---T-----G--GC-G-CC-T-CCAATGCAGGCACTGGT----TG--A-------------ANTA--CG-AAC-TG-----ATTCA-A-TGCAGGCATTGGAACNACAGTAT--GGCGTCATTTAA-TGCAGGCATTGGC-TGG----CTATAAACTGAT-TCAATG-CAGGCATCGGACC-ACTC---GAA-AGTCGTCCAGTGCA-GGCATTTACA
Reference ( gi|1 ) : ACTCTGAACCTAAATATTT--T---TTTGTCTCA-A--T-ATTTTTT-CATAATATT-GA---TCCATTG--------TATTA--A-AGATATTTGAAATGG-A--------TATTGACTTTTACACTCTCAAAA-GATAAA-AAC--G-GAGTTAATT--TTGATCATCAAATT---GTTGTTTT---AATCATAT--ATG-AGT--TATCCAGATTTAATAAAAAGGATTT-GGTTT--CA-TCTA-TGTAT-TTAACAAAAATGGGTCGGCGCAAAGTTGGTATGGAAA-CTCTAATGC-ACTGTTGGATTATATAATTGGTT-GCAACTTTTTATC-CATTTT-G----CAAT-TTCTTTTAAAAACTAA-TTACA--AG-GGCTC--TTGAAATT-GTTA-ATAT-ATG-TTTTTGCGAAATGGAAA--CCGAATAATA---AT-TATATTC-ATA-GCAT-GATT-T-ACATGAAG-AA--TTGAATGA--GTTATGGAATGCA-GCAACCCACT--ATCGACGAAAAG-AAATACT-GCCAT-GG--CAT-TTTT---GCAAAA-AATGGACAATA-TAGCGAAATCGTTTCAATTTTTATTGCCAAT-CAGACATTTA---AACTATTAT------TTGATGAATACCAGCAT--ACCGTAGCTTTCGCGCTTGTAACGA-ATCTTTAGTAAGAATTCAATC------ACAGC-CTGG--AA-TG-AC-TT-TCAATG-----A--CAATAGT-GGCAGTAGAATACCACTCAGAAT---ATTTCAAGAA-CCAATAACAAAC-ATTACCCCACTCTGT--CACAA---AA--GC--ATGCCCGGC--GTTGGAGCCACTATTTC----G-CAGCCAATGGAGGCTTTGGGTGAATA--CTGAACAAC-CAA-TGCAG-CGTTAGTATACTAGA-AATAT-GATTTCATCAGATGGCAGGTGTTGG--G--GGT-CGACA---TCATCCAATGTA--------G-C-AT-T-----T--TTA---T---CT--TCC--T-----GCAGGCA-TT-G-TCTATACT-ATA----AA--CTGA------------T-C-AAT---GCAGGCATT--------GGAC-CAG-T-CCT---GGT-----GTCGTCCAATGCAGGTA---GGATTGA-GCG-A-CT--A-C-A-A-CT-GAT------------------TC---CAATGC-ATGCATTGG---ACCAGT-TATG-G-GTCGGTCC-------CAA-------GC--------G--------AC-G-----------TAAA--CTGATTTCCAT---G-CAGGCA--A--TTG--GAACC-A-A--CAAGGC-GTCG-T-CGA-AATGC--G--C--TT-GAG-CGA-C-TA-AAAAATGGATTCA-ATGCAACGGCATTGG---GAC-GAGTTATGGCGTGTC----GT-CCAATGCAGGT-A-T-GGGC-GAG-T-ACAAACCTG-ATTCA-AATGCA-GCCA-T---TGGCCGA---GT----AT--G-CG-TC--TTC------CCAATGC---AGGCAAT-GG-----TTGA---CT--A---A---C---AAACT-GA----TTCAATG-C-AGGC----A-TTTGG-AG--CAGT--AT----G-G-GTT--GTCG-AATGCAGGGCATTGGGGCGACTGG-TGTA---A-ACTGATTGA------------------AATGCAGGCA-TTGGAC-CAG--T--AT-G-C-G-T-CGTC-----CA--AATG--CTTGCATT-GAG--CGACTATAC-----------A---TA----C----TG-ATTCAA--T-G-CAGGCA-TTGGA----ACC-AGT--A-TG-G-GCC--CCG---GGT--GT-GTCCAATGCAGGCATTCA----G-CGGA--CTA-C-A----A----CT--ATTT----A-ATGCA-GGCAT-TGA---A--C-A--G--T--ATG--G-GTCGTCCAATG-C-T-GCTATT---G---------AAA-----GC--GA-TACAA-ACTG--------------------TTT------A-TG--TAGG-----AT--TTGG--GACCAG--TATGGCG-TCGT--CCA--GC-A-AT-GC-AT---T-------CA---A--AC-GA-------ACTA--T-AA-C-TGATTCA-ATGCAA-GGC----TTGGACC-ATA--ATGGCGT-CGTTCAATT---GCTTGCATTAG---AGCGA-AC--AACAAA-------A--G---------ATTCAATGAAAAAG--GC-ATTG---GA-C-A-GTATGGGGGCGTCGTCCAATGCAGGCA-----TT-G-G-C-G-AC---------------AGTA-AAA-CG-GATTCC-ATGCAAGC-ATT-GGCCT-AGTAT-G-ACG-GTCGT-CCAATGCAGGCA------T-GGG--GA--GTA--ACAA-----TGA--T-----------------ATTCAAAATGCA-G--C-ATT-GG----CCG---TGTA---T-----G--GC-G-CC-T-CTAATGCAGGCA-TAGT----TG--A-------------AATA--CA-AACATG-----ATTC--A-TGCAGACATTAGAACCACAGTATG-GGCGT-ATTT-A-TACTAGCATTGGCTTGG----CTATGAAATGAT-T-AATGCCAGGCA-TGGATC-ACTTATAGAACAGTTG--AAGGGGAGGGCATTGACA
gi|2 : ACTCTGAAT-TAAAT--TT--T---TTTGTCAAA-T--T-ATTTTTT-TTTTATATT-AACAATCAATGG--------TATTA--ATAGA-ATTTGAA-TGG-AATATCATGTATTGACTTTC-TACTCTCAAT--GATAAATAAC--G-AAGT--ATT--T--ATCATAAAGT-------GTTTT---AATCA-ATCAATGTGGT--TATC-AGATT-----GAAGGAATTT-GGTTT--AA-TCTA-TGTAT-TCA-CAAAAATGG-TCGG-GAACAGTTGGTATGGAAA-CGTCAATGT-ACTGTTG-ATCATA--ATTGTTT-GCCACTGTTCATC--ATTTT-GGCCGCAAT-TATTTTTAAA--CTAA-TTACA--TG-TGCGC--TTGAAATTCGT---ATGT-ATGTTTTTTGCGTAATGGAAA--TCCGATCATA---AT-TTAACACGATA-TCATCGATT-TAATATG-AG-GA--TTGAATGA--CTTA-GCAATGCACGCGACCAACTTAAT--ATGAAAAATGAATGCT-GCCATGGG--TAT-TTTTTCGGCAAAG-AAT-TACAATACTAAGAAAATCG-TTCA--TTTTAACGTCAATGCAGAAATTT----AACTATTTT------TTG-TCAATTACAGCATG-ATCGT-GCTT---CGCTTGTAGAGA-ATCTCTTCT-----CTCGGTCATGCCAACAGA-CTGGGTGG-CG-ACATC-TCATTG-----GACCAATA-T-GGCAGTAGCA-ACCACCTCGACT---ATTTCAAGAAGCCAATATGAGGC-ATTA-CCAACTCTGT--CACAAGCCAATCGC--AGGC----C--ATTGGA-CCAC-ATTTCAAGAG--AG-CAATGCTG--TTTGGTTGAATAT-CTGAACAGC-CGATTGCAG-GTTTAG-------GAGAATATCAATTTCTTTCAAT-GCAGGCGTTGG--G--A---C-ACAAG-TCATCCAATG-----------------------------------------CC-----------AGCA-TT-G-GTTATA-T-ATA----AAGCTTGAC-----------T-C-AAT---GC-GGAATT--------GGGC-CCA-T-TAT---GGC-----GGCGTCC-ATG-AGGC------ATTG--GCG-ATCT--A-C-A-A-CT-GAT------------------TC---ATATGCAAGGCATTGG---G-CAG---ATG-GCGTC-GTCC-------AAT-------GC--------G--------GC-ATTGTCAGCTGTTAAA--CTGATT--CAT---GACGGGCG--A--TTG--G--CC-A-AGTTTTGGCGGTCG-TAC---AATGCAGG--CAATT-GGT-CTA-C-T----TAACTGATTCA-ATGCA--GGCATTGG---GCCTG---TATGGCAT-CC----GTCCCAATGCAGGC-ATT-GGGC-GAC-T-GTAAACTGA-ATTC--AATGCA-GGCA-T---TGGGCCA---GT----AT--G-CG-
gi|13 : cCTCTGAAC-----TATTT--TCTTTTTGTC-CA-AATT-ATTTTTT-CATAATATTCGA---TCAA-TG--------TATT---A-AGAGATTTGAAAAGGAA--------TATTGACTTTT--ACTCTCAAAATGATAAA-AACTAGTAAGTTAATT--T--------GAGTT---GT--TTTT---AATC--AT--ATG-AGT--TAcgcgtaataatgc
gi|9 : tgcgTCGGAAC-TAATTTTTT--T---TTTGT-TCATA--TCATTTTTT-TATAATATA-CA---ACCAATGTTTCTCAATACTATTG-AGAGATTTGCAATGGAA--------TATTGACTTTT--ACTCTCAAAATGATAAA-AAC--T-GAGTTAATT--T--ATCATAAAGTTTTGGTTTTTTTTTAAAT--TAT--ATA-AGT--TAT-CAGATT-----GAAAGGATAT-GGTTT--AA-TCTA-TGTAT-TC-ACAAAAAT
gi|3 : TATTTCAT---TTCGCATTA-G--T-GCTTGCTGCATTGCATC-GA---TC-ATTA--------TATTT--A-AGATATTTGAAATGG-AAC------TATGTACTTTTAC--TCCCAAAATGATAAA-AACT-G-AAGTTAATC--TT-ATTATAAAAGT----TTGTTTT---AATCACTT--ATG-AGTATTATC-AAATT----GAAAAGGATTTTGGTTT--AAATCTAATGTAC-TTCACAAAAATGG-TCAGCG-AAAGTTGGTATGGAAAACATCAATGCGATCGTTG-ATTATA--ATTGTTTTGCAACTTTTCATCGCATTTTTG----CAAT-T-CTTTTATTTGCTAAATGACACCAGTGGCGCACTTGAAATT---TA-GTATTATG-TTTTTGCGTAATGGACATTCCGA-TAGTATGAATATATGTAC-ATATACAT-GATT-T-AAATGAAG-GAATTTGAATGACCGCTTTGCAATGCA-GCAGC--ACT--AATG-CGAAT-G-AAATACTTGCGAT-GGGTCATGTTTC---GCAAAAGAATTTACAA-A-TAGCAAAATCTTTTCA---TTTAAAGCCAATGCAGA--TTTATATAACTAT-ATCTTTGATTGGTGGCTTTAAGCATGTACTATATCTCTCTC--------CGAGATC---------AAACCATGC------ACGATACTGG--CGCTGTAC-TTCTCAATGCCGGGAT-CAATACTCGGCAGTAG---ACCACTC-GACTTAAATTTCAAAAG-CCAACTACAGGCAATTACCCAACTCTGTCCCACAA---AA--GCCAATG-CTGGCTTATTGG
gi|12 : gATTTTAAATGA-AA-------TATTGGCTTTTAC--TTTCAAAATGATAAA-AAC--T-GAGTTAATT--T--ATCATAAGA-----GTTGTTTT-----TCACAC--ATG-
gi|8 : atcactcaaaacattaagatcttataacttggacaataatattttagtttagatctaaatgttttgagtg-A--------TATTGGCTTT-A-ACTCTCAAAATGATAAA-AGA--A-AATTTAGTTATTTTATCATGAAA-----GTTGTTTTT--AAT--TAC--ACG-GGT---A--CA----TAATGTAAA---TAT-GGTTTGCCA-TATA-CACATATTCACTGAAATGA-CCAGCG-AAAGTTGGCATGGAAA-CATCAACGT-ACTGTT-GATAATAT--TT--TTAACAGC-TTATAAC-CAGTTT-G----CAATGTTTTTGCGAATAATAA-TT---------GCGT--TTGAAATC-GGGATATAT-TTG-CCGTAGCGTAATTAAAT--CCG-TTCACA---AT-TA-ACAC-CGA-ATGT-GATTAA-ACATGAGGAAA--TTGAATGA--GTT-TACAATACA-CCGA-CCACT--Acac
gi|17 : aaCTTTTAC--TCTCGAAATGATAAA-AAC--T-GAGTTGATT--T--ATCATAAGA-----GTTG
gi|3 : AATGA--TCGATGCAATGCA-GCAA-GCACT--AATG-CGAAATG-AAATACc
gi|4 : GGC--ATTGGA-CCAGTATGGC----GTCATCCAATGCAGACATTGGGCGACTAAACTGATCGGC-CGAGTATGG-CGT-------------AAT----------TCA-ATG-CAGGCATTGGCCG--AGTATGGAG---TCGTCCAATGCA--------ATC-AC-TGGG--TGACTA---TGAACTGATTCAAT-----GCAGGCA-TC-G-TCCG-ACT-ATG----AA--GTGA------------T-TTAAT---GTAGGCATTAATTTGGTGAAC-TA------T---AGA-----GTCGTCCAATGCAGGC------ACTGA-CCG-A-CTCGA-A-A-G-TC-G--------------------TC---CAGTGC-AGGCATTatatttaagatatttgaaatggaactatgtacttttactcccaaaatgataaaaactgaagttaatcttattataaaagtttgttttaatcacttatgagtattatcaaattgaaaaggattttggtttaaatctaatgtacttcacaaaaatggtcagcgaaagttggtatggaaaacatcaatgcgatcgttgattataattgttttgcaacttttcatcgcatttttgcaattcttttatttgctaaatgacaccagtggcgcacttgaaatttagtattatgtttttgcgtaatggacattccgatagtatgaatatatgtacatatacatgatttaaatgaaggaatttgaatgaccgctttgcaatgcagcagcactaatgcgaatgaaatacttgcgatgggtcatgtttcgcaaaagaatttacaaatagcaaaatcttttcatttaaagccaatgcagatttatataactatatctttgattggtggctttaagcatgtactatatctctctccgagatcaaaccatgcacgatactggcgctgtacttctcaatgccgggatcaatactcggcagtagaccactcgacttaaatttcaaaagccaactacaggcaattacccaactctgtcccacaaaagccaatgctggcttattgg
gi|7 : ggcccagtatggcgtcgtccaatgcaggcattcggcgactacaaactgattcaatgcaGAGCGACTA--CAAAATGATTCAA-TGAAGGCATTGG---ACCAG----TAT-GGCGTCGTCCAATG-CAGGCATTGG--GCGAGT---ACAAATTGATTCAATGCA--------G-CCAT-TGGCCGT--GTA---TGG-CG--TCC--TCTAATGCAGGCA-TT-A-GTTG-AAT-ACA----AA--CTGA------------TTC-AAT---GCAGACATT--------AGAC-CAG-T-A-T---GGC-----GTCATTTACTAC---TA---GCATTGG-CTG-G-CT--A-TGA-A-CT-GAT------------------TC----AATGC-AGGCATTGG---ATCACT-Ttacattttaaagtaaaccaaatcctgacattgacgaactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|4 : agtatggcgtcgttcaatgcttgcataC-CAA-TGCAGGCATTCGGCGACTACA-AAC-T-GATTCAAT------GCAGGCATTGG--ACCAGTATGGCG---TCATCCAATGCA--------GAC-AT-----------------------------T-----G--GGC-----G-ACTAAACTGATC----GG--CCGAGTATGGCGTAATT-C-AAT---GCAGGCATT--------GGCC-GAG-T--AT---GGA-----GTCGTCCAATGCA---A---TCACTGG-GTG-A-CT--A-TGA-A-CT-GAT------------------T----CAATGC-AGGCATCGT----CCGAC-TATG-------------------AA-------G----------------------------------------TGATTT-AAT---G-TAGGCATTAATTTGGTGAACT---A--TA--GA-GTCG-T-C-C-AATGCAGG--CA-CT-GAC-CGA-C-TC-GAAAGTCG-TCCA-GTGCA--GGCATTtgtcaggagccaatgcaggcattggactactctcaaagtgccattgcggccagtttagtttcgttagatatattttcctcttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|6 : ggcccagtatggcgtcgtACTATA-AAC-T-GATTTAAT------GCAGGCATTGG--ACCAGTATGGCG---TCATCCAATG----------------------------------------------------CAGACA-TT-G-GCCG-ACT-ATA----TA----------------------------GCAGGCAAT--------GGCC-GAA-T-A-T---GGT-----GTCATTCAATGCAGGC------ATTGA-ACA-A-Ctacattttaaagtaaaccaaatcctgacattgacgaactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|5 : tgGACG---TCCTCCAATGCATGTATTGGG-C-ATAT-----T--CTGACGT---CA--TCCAAC-----GCAGGTAATT-G-GC-ATATT-CTG----AC--GTCA------------TGC-AAT---GCAGGTATT--------TGGC-AAA-T-TCT---AAA-----GTCATTCAATACAGgctttgatactctgctgaattgcaatgtatctttcaacagccaatgcatgcactggatgaatatctcatattggcctactttctcaggagccacatgcaattgcatgcctcaaataaacgtgtaccttaggacaatgcagacagtagtttacttttttcagagtcaatgaaagtattgatagaagcaaagctgagatagaatgacctgacatttgaggtctatgccttcttcagagtcattgcaagcactgaacttcttcctatgtgcagttagttcaagcattgcatgaccttctatctacagccaaagcagacggattta
gi|7 : tgcatgtatttggcatattctCAATG----------G-C-AC-T-----T--TGAGAGT---AG--TCCAAT-----GCCTGCA-TT-G-GCTC--CTGACA----AA--GTGA------------T-CCAAT---GCCTGCATT--------GAAT-CAG-T-TC-----ATA----GCCAGCCAATGCTAGTA---G---TAA-ATG-A-CG--C-C-ATA-CT-GGT-------------------C---TAATGT-CTGCATTGA---ATCAGT-Tacgttactagactttgaagtcgttcaatggatttgcttcagaatctgttaatgcccgcattggataactttagagtaaaacaatgcatgcactgagaaaaagaatcgaacgacgcccgttctaggagaacattatantagagtaaaacaatgcatgcactgagaaaaatagtcaaacgacgcccgttctaggagaacattatgtgtacttgttccagcatttagacattaagacaaaaatgtatagtctaagttaaagtctaagttaattgcattcaggtacacaagtaaaatgttttcagcattttctcaaagtacattcaaatattcttaacttgaaaatactcttctaaaaaatacgctgatttgattttttttttttcaatttgctaaaacgtccattgaaattgctgaaaattttcgctagaattatgacagtgcgctagtgctttgcgatcgtaacaatttataacacataccgaaagttcgttattcaatttcaaaaatggat
gi|5 : agtatggcgtcgttcaatgcttgcatagagcgactacaaaatgattcaatgaaggcattggaccagtatggcgtcgtccaatgcaggcattgggcgagtacaaattgattcaatgcagccattggccgtgtatggcgtcctctaatgcaggcattagttgaatacaT-C-----T--TTT---T---CT--CAG--T-----GCATGCA-TT-G-TTT-TACT-CTA----AA--GTTA------------TCC-AAT---GCGGGCATT----------AA-CAGAT-TCT---GAA-----G----CAAATCC----------ATTGA-ACG-A-CT--T-C-A-A-cggccagtttagtttcgttagatatattttcctcttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|4 : tgcatgtatttggcatattctgacgtcctccaatgcatgtattgggcatattctgacgtcatccaacgcaggtaattggcatattctgacgtcatgcaatgcaggtatttggcaaattctaaagtcattcaatacagacgttactagact---T---CG--TCCAAT-----GCAGGCA-TTCG-GCGA--CT-ACA----AA--CTGA------------TTC-AAT---GCAGGCATT--------GGAC-CAG-T-A-T---GGC-----GTCATCCAATGCAGACA------TTGG-GCG-A-CT--A---A-A-CT-GATCGGCCGAGTATGGCGTAATT---CAATGC-AGGCATTGG---CCGAGT--ATG-GAGTCG-TCCAATG---CAATCACTGGGT--------G--------ACTA-----------TGAA--CTGATT-CAAT---G-CAGG----------------------------C-ATCG-T-C-----------------------CGA-C-TA-TGAAGTG-ATTTA-ATGTA--GGCATTAATTTGGT-GAACTATAGAGT--C----GT-CCAATGCAGGC-ACT-GACC-GAC-T-CGAAAGTCG---TCC-AGTGCA-GGCA-T---Tatcgaacgacgcccgttctaggagaacattatantagagtaaaacaatgcatgcactgagaaaaatagtcaaacgacgcccgttctaggagaacattatgtgtacttgttccagcatttagacattaagacaaaaatgtatagtctaagttaaagtctaagttaattgcattcaggtacacaagtaaaatgttttcagcattttctcaaagtacattcaaatattcttaacttgaaaatactcttctaaaaaatacgctgatttgattttttttttttcaatttgctaaaacgtccattgaaattgctgaaaattttcgctagaattatgacagtgcgctagtgctttgcgatcgtaacaatttataacacataccgaaagttcgttattcaatttcaaaaatggat
gi|16 : ggcccagtatggcg--T-----GCAGGCG-CT-GGTCGA--CT-ATG----AA--CTGA------------TTC-ACT---GCAGGCATT--------GGGC-tacattttaaagtaaaccaaatcctgacattgacgaactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|10 : cca--T-----GCAGGCA-TG-A-TC---ACT-TTAGTCAAG--CCGC------------T-C-AAT---GCAGGCA-T--------GGAC-CA----CCTCAAAGT-----G----CCAATGg
gi|7 : ttcagaACT-ACA----AA--ATGA------------TTC-AAT---GAAGGCATT--------GGAC-CAG-T--AT---GGC-----GTCGTCCAATGCAGGC------ATTGG-GCG-A-GT--A-CAA-A-TT-GAT------------------T----CAATGC-AGCCATTGG----CC-GTGTATG-G---C-GTCCTCTAATGCAG-------GCATTAGTTGA--------AT-A-----------CAAA--CTGA-TTCAAT---G-CAGAC---A--TTA--G-ACC-A-G--TATGGC-GTCA-T-TT--ACTACTAG--CA-TT-GGC-TGG-C-TA-TGAACT-GATTCA-ATGCA--GGCATT-G---GAT-CACTT------TGTCAGGAG--CCAATGCAGGC-A-T-TGGgcgccagtttagtttcgtagatatattcctctctttatatcaatcaacagaattgcttttttgctcatcaaaaataaaaccgactaatttcttagtgttcattagagcattatgaattgtaataaaaatgag
gi|6 : agtatggcgtcgttcaatgcttgcatagagcgACT-ATA----AA--CTGA------------T-TTAAT---GCAGGCATT--------GGAC-CAG-T--AT---GGC-----GTCATCCAATGCAGAC------ATTGG-CCG-A-CT--A-T-A-actactctcaaagtgccattgcggccagtttagtttcgttagatatattttcctcttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|11 : tgT-ATT----AA--CT----------------C-AATTTTGCAGGCATT--------TGGC-CTG-T-TAT---GGT-----GTCATCtagcaggcaatggccgaatatggtgtcattcaatgcaggcattgaacaacgctttgatactctgctgaattgcaatgtatctttcaacagccaatgcatgcactggatgaatatctcatattggcctactttctcaggagccacatgcaattgcatgcctcaaataaacgtgtaccttaggacaatgcagacagtagtttacttttttcagagtcaatgaaagtattgatagaagcaaagctgagatagaatgacctgacatttgaggtctatgccttcttcagagtcattgcaagcactgaacttcttcctatgtgcagttagttcaagcattgcatgaccttctatctacagccaaagcagacggattta
gi|2 : ttcaatttgaatggctacttggcccattgttggcgtcgtccaattttctaggccattggccgaattccatttactaaacttgaaaatttcaatactaggcatttggtcaatgttatgcctgcgcttttcaA--CTGG------------C-CCAAT---GCCTGCATT--------GAATTCAG-T-T-T---ACA-----GTCGCCCAATGCCTGCATTGGGACGGATGCC-A--T--A-C-A-G----G--------------------CC---CAATGC-CTGCATTGA---ATCAGT-TAttataccctacatcagttgggct
gi|4 : cactctgaattaaatttttttgtcaaattattttttttttatattaacaatcaatggtattaatagaatttgaatggaatatcatgtattgactttctactctcaatgataaataacgaagtatttatcataaagtgttttaatcaatcaatgtggttatcagattgaaggaatttggtttaatctatgtattcacaaaaatggtcgggaacagttggtatggaaacgtcaatgtactgttgatcataattgtttgccactgttcatcattttggccgcaattatttttaaactaattacatgtgcgcttgaaattcgtatgtatgttttttgcgtaatggaaatccgatcataatttaacacgatatcatcgatttaatatgaggattgaatgacttagcaatgcacgcgaccaacttaatatgaaaaatgaatgctgccatgggtattttttcggcaaagaattacaatactaagaaaatcgttcattttaacgtcaatgcagaaatttaactattttttgtcaattacagcatgatcgtgcttcgcttgtagagaatctcttctctcggtcatgccaacagactgggtggcgacatctcattggaccaatatggcagtagcaaccacctcgactatttcaagaagccaatatgaggcattaccaactctgtcacaagccaatcgcaggccattggaccacatttcaagagagcaatgctgtttggttgaatatctgaacagccgattgcaggtttaggagaatatcaatttctttcaatgcaggcgttgggacacaagtcatccaatgccagcattggttatatataaagcttgactcaatgcggaattgggcccattatggcggcgtccatgaggcattggcgatctacaactgattcatatgcaaggcattgggcagatggcgtcgtccaatgcggcattgtcagctgttaaactgattcatgacgggcgattggccaagttttggcggtcgtacaatgcaggcaattggtctact-C-GAT---GCCTGCATT--------GAAT-CAG-T-TC-----ATA----GTCACCCAGTG---ATT---GCATTGG-ACG-A-CT--C-C-ATA-CTCGG--------------------C---CAATGC-CTGCATTGA---Aatgcgcgcgtaataatgc
gi|5 : ggcccagtatggcgtcgtccaatgcaggcattcggcgactacaaactgattcaatgcaggcattggaccagtatggcgtcatccaatgcagacattgggcgactaaactgatcggccgagtatggcgtaa-C-AAT---GCATGTATT--------GGGC-ATA-T-TCT---GAC-----GTCATCCAACGCAGGTA-----ATTG--GCATA-TT----------CT-GACG-----------------TCATGCAATGC-AGGTATTTG---GCAAAT-Ttccgactatgaagtgatttaatgtaggcattaatttggtgaactatagagtcgtccaatgcaggcactgaccgactcgaaagtcgtccagtgcaggcatttacattttaaagtaaaccaaatcctgacattgacgaactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|6 : tgcatgtatttggcatattctgacgtcctcATT--------CGGC-CAT-TGCCT---GCTATATAGTCGGCCAATGTCTGCA------TTGG-ATG-A-CG--C-C-ATA-CT-GGT-------------------C---CAATGC-CTGCATTAA---ATCAGT-Tctaaagtcattcaatacagacgttactagactttgaagtcgttcaatggatttgcttcagaatctgttaatgcccgcattggataactttagagtaaaacaatgcatgcactgagaaaaagaatcgaacgacgcccgttctaggagaacattatantagagtaaaacaatgcatgcactgagaaaaatagtcaaacgacgcccgttctaggagaacattatgtgtacttgttccagcatttagacattaagacaaaaatgtatagtctaagttaaagtctaagttaattgcattcaggtacacaagtaaaatgttttcagcattttctcaaagtacattcaaatattcttaacttgaaaatactcttctaaaaaatacgctgatttgattttttttttttcaatttgctaaaacgtccattgaaattgctgaaaattttcgctagaattatgacagtgcgctagtgctttgcgatcgtaacaatttataacacataccgaaagttcgttattcaatttcaaaaatggat
gi|7 : tgactataT---GGC-----GTCGTTCAATGC---TT---GCATAGA-GCG-A-CT--A-CAA-A-AT-GAT------------------T----CAATGA-AGGCATTGG---ACCAG--TATG-GCGTC-GTCCAATG---CAG-------GCATTG----G--------GC-GAGTA-------CAAA--TTGA-TTCAAT---G-CA-GCC--A--TTG--G--CC-GTG--TATGGC-GTCC-T-CT--AATGCAGG--C--AT-TAGTTGA-A-TA-CAAACT-GATTCA-ATGCA--GACATT-A---GAC-CAG-TATGGC--GTC----AT-TTACTACTAGC-A-T-TGGCTGGC-T-ATGAA-CTG-ATTC--AATGCA-GGCA-T---TGGATCA---CT----TT--G---------TCAGGAG-CCAATGC---AGGCATT-GG-----ACTA---CT--C---T---C---AAAGT-G------CCATTG-C-GGCC----AGTTTAG-atggtgtcattcaatgcaggcattgaacaacgctttgatactctgctgaattgcaatgtatctttcaacagccaatgcatgcactggatgaatatctcatattggcctactttctcaggagccacatgcaattgcatgcctcaaataaacgtgtaccttaggacaatgcagacagtagtttacttttttcagagtcaatgaaagtattgatagaagcaaagctgagatagaatgacctgacatttgaggtctatgccttcttcagagtcattgcaagcactgaacttcttcctatgtgcagttagttcaagcattgcatgaccttctatctacagccaaagcagacggattta
gi|15 : agtaT---GGC-----GTTTTCGAATGCAGGC------GTTGA-ACG----C--A-G-A-A-CT-GAT------------------TC---AGATTC-G-ACATAAG---ACCAtttcgttagatatattttcctcttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|4 : tgga-----GTCGCCCAATGTCTGCA------TTGG-ATG-A-CG--C-C-ATA-CT-GGT-------------------C---CAATGC-CTGCATTGA---ATCAGT-T-TGTA-GTCGctgtg
gi|16 : ggcccagtatggcgtcgtccaatgcaggcattcggATGCAGGCG------CTGG-TCG-A-CT--A-TGA-A-CT-GAT------------------TC----ACTGC-AGGCATTGG---GCtaaactgatcggccgagtatggcgtaattcaatgcaggcattggccgagtatggagtcgtccaatgcaatcactgggtgactatgaactgattcaatgcaggcatcgtccgactatgaagtgatttaatgtaggcattaatttggtgaactatagagtcgtccaatgcaggcactgaccgactcgaaagtcgtccagtgcaggcatttacattttaaagtaaaccaaatcctgacattgacgaactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|2 : ccTGCAGGT-------TTAG-GAG-A-AT--ATC-A-A-TT-TCT------------------TT---CAATGC-AGGCGTTGGGACACAAGT-CAT-----CCAATGC-------CA--------GC--------ATTGGTTATAT-A-----------TAAAGCTTGACT-CAAT---G-CGG--A--A--TTG--GGCCC-A-T--TATGGC-GGCG-T-CCATGAGGC--A-----TT-G-G-CGATC-TA-CAA--CTGATTCATATGCAA-GGCATTGG---G-C--AG--ATGGCGT--C----GT-CCAATGC-GGC-A-T-TGTC-AGC-T-GTTAAACTG-ATTCATGACG-G-GCGA-T---TGGCCAA---GT----TTTGG-CGGTC--GTA------C-AATGC---AGGCAATTGG-----TCTA---CT--T---A---------ACT-GA----TTCAATG-C-AGGC----A-TT-GG-GC--CTGT--AT----G-G-CATCCGTCCCAATGCAGG-CATTGGG-CGACTG----TA---A-ACTGAATTC------------------AATGCAGGCA-TTGGGC-CAG--T--AT-G-C-G-g
gi|6 : cactctgaattaaatttttttgtcaaattattttttttttatattaacaatcaatggtattaatagaatttgaatggaatatcatgtattgactttctactctcaatgataaataacgaagtatttatcataaagtgttttaatcaatcaatgtggttatcagattgaaggaatttggtttaatctatgtattcacaaaaatggtcgggaacagttggtatggaaacgtcaatgtactgttgatcataattgtttgccactgttcatcattttggccgcaattatttttaaactaattacatgtgcgcttgaaattcgtatgtatgttttttgcgtaatggaaatccgatcataatttaacacgatatcatcgatttaatatgaggattgaatgacttagcaatgcacgcgaccaacttaatatgaaaaatgaatgctgccatgggtattttttcggcaaagaattacaatactaagaaaatcgttcattttaacgtcaatgcagaaatttaactattttttgtcaattacagcatgatcgtgcttcgcttgtagagaatctcttctctcggtcatgccaacagactgggtggcgacatctcattggaccaatatggcagtagcaaccacctcgactatttcaagaagccaatatgaggcattaccaactctgtcacaagccaatcgcaggccattggaccacatttcaagagagcaatgctgtttggttgaatatctgaacagccgatG-A-CT--A-T-A-AACT-GAT------------------TT----AATGC-AGGCATTGG---ACCAG--TATG-GCGTC-ATCC-------AAT-------GCA-------G--------AC-A-----------TTGG--CCGA---CTATATAG-CAGGCA--A---TG--G--CCGA-A--TATGGT-GTCATT-C---AATGCAGG--CA-TT-GAA-CAA-C-cgcgtaataatgc
gi|4 : tGG---CCCAGT--ATG-GCGTCG-TCCAATG---CAG-------GCATTC----G--------GC-GACTA-------CAAA--CTGATT-CAAT---G-CAGGCA-----TTG--GA-CC-A-G--TATGGC-GTCA-T-CCA-A-TGC--AGACA-TT-GGG-CGA-C-TA-AA---CTGAT----------CGGC----------C-GAGT-ATGGCGTA------AT-TCAATGCAGGC-A-T-TGGCCGAG-T-ATGGAGTCG---TCC-AATGCA-ATCA-C---TGGGTGA---CT----AT--G-AA-CTGATTC--------AATGC---AGGCATC-GT-----CCGA---CT------A---T---GAAGT-GA----TTTAATG-T-AGGCATTAA-TTTGG-TG--AACT--ATA---G-A-GTC--GTCC-AATGCA-GGCACT-GACCGACTCG----A---A-AGTCGTC-C------------------AGTGCAGGCA-TTgctttgatactctgctgaattgcaatgtatctttcaacagccaatgcatgcactggatgaatatctcatattggcctactttctcaggagccacatgcaattgcatgcctcaaataaacgtgtaccttaggacaatgcagacagtagtttacttttttcagagtcaatgaaagtattgatagaagcaaagctgagatagaatgacctgacatttgaggtctatgccttcttcagagtcattgcaagcactgaacttcttcctatgtgcagttagttcaagcattgcatgaccttctatctacagccaaagcagacggattta
gi|6 : -----------TAAA--CTGATTTA-AT---G-CAGGCA-----TTG--GA-CC-A-G--TATGGC-GTCA-T-CCA-A-TGC--AGACA-TT-GGC-CGA-C-TA-TA---TAG---CA-G-GCAATGGC----------C-GAAT-ATGG--TGTC----AT-TCAATGCAGGC-A-T----T-GA----ACAACGCT---TT---GATAC-------T---CTGCTGA---ATTGCAAT--G-TA-TC--TTTCAACAGCCAATGC---ATGCACT-GG-----ATGA---AT--A---tacattttaaagtaaaccaaatcctgacattgacgaactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|2 : tgactaTTTCAAT---G-CAGGCG-----TTG--GGAC----A--CAAGTC-ATC----C---AATGCCAG--CA-TT-G-G-TTA-TATATAAAGCTTGACTCA-ATGC---GGAATTGG---GCC-CA-TTATGGCG-G-C----GT-CCA-TG-AGGC-A-T-TGGC-GATCT-ACAA--CTG-ATTCA-TATGCAAGGCA-T---TGGGC-A---G-----AT--GGCG-TC--GTC------C-AATGC----GGCA-T-TG-----TCAG---CT--G---T---T---AAACT-GA----TTCA-TGAC-GGGC----G-ATTGG-CC--AAGT--TT----T-G-GCG--GTCG---TACAATGCA----GGCAATTGG-TCTACTTA-ACTGATTCA------------------A-TGCAGGCA-TTGGGC-CTG--T--ATGG-C-A-TCCGTC-----CC--AATG--CAGGCATT-GGG--CGACTGTA------------A----A----C----TGAATTCAA--T-G-CAGGCA-TTGG-----GCC-AGT--A-TG-C-GCtctcatattggcctactttctcaggagccacatgcaattgcatgcctcaaataaacgtgtaccttaggacaatgcagacagtagtttacttttttcagagtcaatgaaagtattgatagaagcaaagctgagatagaatgacctgacatttgaggtctatgccttcttcagagtcattgcaagcactgaacttcttcctatgtgcagttagttcaagcattgcatgaccttctatctacagccaaagcagacggattta
gi|7 : cactctgaattaaatttttttgtcaaattattttttttttatattaacaatcaatggtattaatagaatttgaatggaatatcatgtattgactttctactctcaatgataaataacgaagtatttatcataaagtgttttaatcaatcaatgtggttatcagattgaaggaatttggtttaatctatgtattcacaaaaatggtcgggaacagttggtatggaaacgtcaatgtactgttgatcataattgtttgccactgttcatcattttggccgcaattatttttaaactaattacatgtgcgcttgaaattcgtatgtatgttttttgcgtaatggaaatccgatcataatttaacacgatatcatcgatttaatatgaggattgaatgacttagcaatgcacgcgaccaacttaatatgaaaaatgaatgctgccatgggtattttttcggcaaagaattacaatactaagaaaatcgttcattttaacgtcaatgcagaaatttaactattttttgtcaattacagcatgatcgtgcttcgcttgtagagaatctcttctctcggtcatgccaacagactgggtggcgacatctcattggaccaatatggcagtagcaaccacctcgactatttcaagaagccaatatgaggcattaccaactctgtcacaagccaatcgcaggccattggaccacatttcaagagagcaatgctgtttggttgaatatctgaacagccgattgcaggtttaggagaatatcaatttcGGC-GTCG-TTC---AATGCTTG--C--ATAGAG-CGA-C-TA-CAAAATG-ATTCA-ATG-AA-GGCATTGG----AC-CAGT-ATGGCGT--C----GT-CCAATGCAGGC-A-TTGGGC-GAG-T-ACAAAT-TG-ATTCA-A-TGCA-GCCA-T---TGGCCGT---GT----ATG-G-CG-TC--CT-------CTAATGC---AGGCATT-AG-----TTGA---AT------A---C---AAACT-GA----TTCAATG-C-AGAC----A--TTAG-AC--CAGT--AT----G-GCGTC--ATTT-ACTAC-TAGCATTGG-----CTGGCTATG---A-ACTGATT-C------------------AATGCAGGCA-TTGGAT-CA-----------C-T-T-TGTCAGGAGCC--AATG--CAGGCATT-G-----GAC--------------------TA----C----T---CTCAAAGT-G-C---CA-TTGCG----GCC-AGT--gcgtaataatgc
gi|16 : agtatGC--G--C--T--GGT-CGA-C-TA-TGAACTG-ATTCA-CTGCA--GGCATTGG---Gttagtttcgttagatatattttcctcttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|6 : ccatgcagGA-C-TA-TAAACTG-ATTTA-ATGCA--GGCATTGG----AC-CAGT-ATGGCGT--C----AT-CCAATGCAGAC-ATT-GGCC-GAC-T-ATATA--------------GCA-GGCA-A---TGGCCGA---AT----ATG-G-TG-TCA-TT--------CAATGC---AGGCA----------TTGA---AC--A---A---C---cg
gi|5 : tTCCA-ATGCA--TGTATTGG---G-C-ATATTCTGACGT--C----AT-CCAACGCAGGTAA-T-TGGC-ATA-T-TCTGACGTC-ATGC--AATGCA-GGTATT---TGGCgctttgatactctgctgaattgcaatgtatctttcaacagccaatgcatgcactggatgaatatctcatattggcctactttctcaggagccacatgcaattgcatgcctcaaataaacgtgtaccttaggacaatgcagacagtagtttacttttttcagagtcaatgaaagtattgatagaagcaaagctgagatagaatgacctgacatttgaggtctatgccttcttcagagtcattgcaagcactgaacttcttcctatgtgcagttagttcaagcattgcatgaccttctatctacagccaaagcagacggattta
gi|15 : tgcatgtatttggcatattctgacgtccATGGCGTTT------T-CGAATGCAGGC-G-T----T-GAA-C-GCAGAACTG-ATTCA-GATaaattctaaagtcattcaatacagacgttactagactttgaagtcgttcaatggatttgcttcagaatctgttaatgcccgcattggataactttagagtaaaacaatgcatgcactgagaaaaagaatcgaacgacgcccgttctaggagaacattatantagagtaaaacaatgcatgcactgagaaaaatagtcaaacgacgcccgttctaggagaacattatgtgtacttgttccagcatttagacattaagacaaaaatgtatagtctaagttaaagtctaagttaattgcattcaggtacacaagtaaaatgttttcagcattttctcaaagtacattcaaatattcttaacttgaaaatactcttctaaaaaatacgctgatttgattttttttttttcaatttgctaaaacgtccattgaaattgctgaaaattttcgctagaattatgacagtgcgctagtgctttgcgatcgtaacaatttataacacataccgaaagttcgttattcaatttcaaaaatggat
gi|7 : tggGTA----GT-CCAATGCCTGC-A-T-TGGC-TCC-TGACAAAG-TG-ATCCA-A-TGCC-TGCA-T---TGAATCA---GTTC--ATA-G-C--------CAG----CCAATGC---TAGTAGT-AA-----ATGA---C---G---C---C---ATACT-GG----TCTAATG-T-CTGC----A-TT-GA-AT--CAGT--TT----G-T-ATTC-AACT-AATGCCTG-CATTAGAG-GAC-GC-CATA---C-ACGGCC---------------------AATGGCTGCA-TTGAAT-CAA--T--TT-G-T-ACT-CGCC-----CA--A-TG--CCTGCATT-GGA--CGAC--GCC-----------A---TA----C----TG-GTCCAA--T-G-CCTTCA-TT-GA----ATC-ATT--T-TGTA-GTC----------------GCTCTATGCAAGCATTGA----A-CGtcgacataagaccactgtg
gi|5 : agtatggcgtGTC----CT-CCAATGCATGT-ATT-GGGC-ATA-T-TCTGACGTC-ATCC--AACGCAGGTAA-T---TGGCATA---TT----CT--GACG-TC--AT-------GCAATGC---AGGT-AT--------TTGG---CA--A---ATTCT---AAAGT-CA----TTCAATA-C-AGAC----G-TTtctcaaagtgccattgcggccagtttagtttcgttagatatattttcctcttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|16 : tgcatgtatttggcatattctgacATGCAGGC-GCT-GGTC-GAC-T-ATGAAC-TG-ATTC--ACTGCA-GGCA-T---TGGGCGactagactttgaagtcgttcaatggatttgcttcagaatctgttaatgcccgcattggataactttagagtaaaacaatgcatgcactgagaaaaagaatcgaacgacgcccgttctaggagaacattatantagagtaaaacaatgcatgcactgagaaaaatagtcaaacgacgcccgttctaggagaacattatgtgtacttgttccagcatttagacattaagacaaaaatgtatagtctaagttaaagtctaagttaattgcattcaggtacacaagtaaaatgttttcagcattttctcaaagtacattcaaatattcttaacttgaaaatactcttctaaaaaatacgctgatttgattttttttttttcaatttgctaaaacgtccattgaaattgctgaaaattttcgctagaattatgacagtgcgctagtgctttgcgatcgtaacaatttataacacataccgaaagttcgttattcaatttcaaaaatggat
gi|6 : cc-GAC-T-ATAAAC-TG-ATTTA-A-TGCA-GGCA-T---TGGACCA---GT----AT--GGCG-TC--ATC------C-AATGC---AGACATT-GG-----CCGA---CT--AT--A---T---A-----------------G-C-AGGC----A--ATGG-CC--GAAT--AT----G-GTGTC--ATTC-AATGCA-GGCATTG
gi|4 : tCCTGCATTGA-ATTAC--GCCA-TACTCGGCCGATCAGT----TT--A--G-TC--G-C------CCAATGT---CTGCATT-GG-----ATGA---C---G---C---C---ATACT-GG----TCCAATG-C-CTGC----A--TTGA-AT--CAGT--TT----GTA-GTC--GCCG-AATGC-CTGCATT-GGACGACaacaacgctttgatactctgctgaattgcaatgtatctttcaacagccaatgcatgcactggatgaatatctcatattggcctactttctcaggagccacatgcaattgcatgcctcaaataaacgtgtaccttaggacaatgcagacagtagtttacttttttcagagtcaatgaaagtattgatagaagcaaagctgagatagaatgacctgacatttgaggtctatgccttcttcagagtcattgcaagcactgaacttcttcctatgtgcagttagttcaagcattgcatgaccttctatctacagccaaagcagacggattta
gi|11 : ggcccagtatggc-ATTTG-AATG---GCTACT---TGGCCCA---TT----GTTGG-CG-TC--GTC------C-AATTTTCTAGGCCATTGG-----CCGAATTCC--ATTTA---CT--AAACTTGAAAATTTCAATA-CTAGGC----A-TTTGG-cattggccgagtatggagtcgtccaatgcaatcactgggtgactatgaactgattcaatgcaggcatcgtccgactatgaagtgatttaatgtaggcattaatttggtgaactatagagtcgtccaatgcaggcactgaccgactcgaaagtcgtccagtgcaggcatttacattttaaagtaaaccaaatcctgacattgacgaactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|4 : ttcaGGCCCA---GT----AT--GGCG-TC--GTC------C-AATGC---AGGCATT-CG-----GCGA---CT--A-------C---AAACT-GA----TTCAATG-C-AGGC----A--TTGG-AC--CAGT--AT----G-GCGTC--ATCC-AATGCA-GACATT-GGGCGAC------TA---A-ACTGATCGGCCGAGTATGGCGTAATTCAATGCAGGCA-TTGGCC-GAG--T--ATGG-A-G-T-CGTC-----C---AATG--CAATCACT-GGG--TGACTATG------------A----A----C----TG-ATTCAA--T-G-CAGGCA-TCGT------CCGACT--A-TG----------A---AGT--G--ATTTAATGTAGGCATTAATTTGG-TGAA--CTA-T-AG---A----GTC-GTCC----A-ATGCA-GGCAC-TGA---C--C-G--A--C--TCGAAA-GTCGTCCAGTG-C-tcaatgttatgcctgcgcttttcatattaactcaattttgcaggcatttggcctgttatggtgtcatcttataccctacatcagttgggct
gi|6 : GGCCAA----T----AT--G-AGATA--TTCAT----CCAGTGC---ATGCATT-GG-----CTG----TT--G---A--------AA---GA----TACATTG-C-A-------A-TTCAGCAG---AGT--ATCAAAG-C-GTT--GTTC-AATGCCTG-CATTGAA-TGAC-------------ACC-AT----------------------ATTCGGCCA-TTG--C-CTGC-T--AT-A-TAG-T-CGGC-----CA--A-TG--TCTGCATT-GGA--TGACGC--C-----------A---TA----C----TG-GTCCAA--T-G-CCTGCA-TT-AA----ATC-AGT--aggcatttacattttaaagtaaaccaaatcctgacattgacgaactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|15 : tgactataa--G-CG-TT--TTC------G-AATGC---AGGC-----G-----TTG--------A---A---CGCAGAACT-GA----TTCAtactttctcaggagccacatgcaattgcatgcctcaaataaacgtgtaccttaggacaatgcagacagtagtttacttttttcagagtcaatgaaagtattgatagaagcaaagctgagatagaatgacctgacatttgaggtctatgccttcttcagagtcattgcaagcactgaacttcttcctatgtgcagttagttcaagcattgcatgaccttctatctacagccaaagcagacggattta
gi|5 : tggatg-CG-TC--CTC------C-AATGC---ATGTATT-GGGCATATT-----CT--G---A---C---G---T-CA----TCCAACG-C-AGGT----A-ATTGG-CA--TATT--CT----G-ACGTC--ATGC-AATGCA-GGTATT-TGGCAAAT---TCTA---A-AGTCATT-C------------------AATACAGACG-TT--AC-TAGACT--TT-GAA-G-T-CGTT-----C---AATGGATTTGC-TT-CA----GA--AT-----------------------C----TG---TTAA--T-G-CCCGCA-TTGGA----gattcgacataagaccactgtg
gi|7 : tgcatgtatttggcatattctga------CCAATGC---CTGCATT-GG-----CTC----CT--G---A---C---AAAGT-GA----TCCAATG-C-CTGC----A-TT-GA-AT--CAGTTCAT----A-G-CCA--GCC--AATGC------TAGTAGTAAATGA-CGCC---ATACTGGTCTA------------------A-TGTCTGCA-TTGAAT-CAG--T--TT-G-T-A-T---TC-----AACTAATG--CCTGCATTAGAGGACG-CCATAC-----------A---------C----GG---CCAA--T-G-GCTGCA-TTG-A----ATC-AAT--T-TG-T-ACT--C-------------GCCCAATGCCTGCATT---------GGA--CGA-C-GCCATA----CTG-GTCC----A-ATGCC-TTCAT-TGA---AT-C-A--T--T--TTGT-A-GTCGCTCTATG-C-A-AGCATT---G---------AAtaactttagagtaaaacaatgcatgcactgagaaaaagaatcgaacgacgcccgttctaggagaacattatantagagtaaaacaatgcatgcactgagaaaaatagtcaaacgacgcccgttctaggagaacattatgtgtacttgttccagcatttagacattaagacaaaaatgtatagtctaagttaaagtctaagttaattgcattcaggtacacaagtaaaatgttttcagcattttctcaaagtacattcaaatattcttaacttgaaaatactcttctaaaaaatacgctgatttgattttttttttttcaatttgctaaaacgtccattgaaattgctgaaaattttcgctagaattatgacagtgcgctagtgctttgcgatcgtaacaatttataacacataccgaaagttcgttattcaatttcaaaaatggat
gi|16 : agtatggcgtcgATGC---AGGCGCT-GG-----TCGA---CT--A-------T---GAACT-GA----TTCACTG-C-AGGC----A-TTGGG-actactctcaaagtgccattgcggccagtttagtttcgttagatatattttcctcttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|10 : ccATGC---AGGCA-T-GA-----TC-A---CTTTA---GT--C---AAGCC-G-----CTCAATG-C-AGGC----A---TGG-AC--CAcg
gi|6 : ttcagTGA---CT--A-------T---AAACT-GA----TTTAATG-C-AGGC----A--TTGG-AC--CAGT--AT----G-GCGTC--ATCC-AATGCA-GACATT-GGCCGACT-A-TATA-----------------------------------GCAGGCA-ATGGCC-GAA--T--ATGG-T-G-T-CATT-----C---AATG--CAGGCATT-GAA--CAACcctcaaagtgccaatggcgccagtttagtttcgtagatatattcctctctttatatcaatcaacagaattgcttttttgctcatcaaaaataaaaccgactaatttcttagtgttcattagagcattatgaattgtaataaaaatgag
gi|2 : ---C---ATACT-GG----CCCAATG-C-CTGC----A-TT--G-AATTCAGT--TT----ACA-GTC--GCCC-AATGCCTG-CATTGGGACGGATGC-CATA---C-A--GGCCCA------------------A-TGCCTGCA-TTGAAT-CAG--T---T-A-A-G-T-AGAC-----CA--ATTG--CCTGCATT-GTA--CGACCGCCA-----------A---AA----C----TT-GGCCAA--TCGCCCGTCA-T--GA----ATC-AGT--T-TA-A-------CA---GCT--G----ACAATGC-CGCATT---------GGA--CGA-C------G----CC--ATCTGCCCA-ATGCCTTGCATATGA---AT-C-A--GT-T--GTA--G-ATCG-CCAATG-C-gctttgatactctgctgaattgcaatgtatctttcaacagccaatgcatgcactggatgaatatctcatattggcctactttctcaggagccacatgcaattgcatgcctcaaataaacgtgtaccttaggacaatgcagacagtagtttacttttttcagagtcaatgaaagtattgatagaagcaaagctgagatagaatgacctgacatttgaggtctatgccttcttcagagtcattgcaagcactgaacttcttcctatgtgcagttagttcaagcattgcatgaccttctatctacagccaaagcagacggattta
gi|4 : cactctgaattaaatttttttgtcaaattattttttttttatattaacaatcaatggtattaatagaatttgaatggaatatcatgtattgactttctactctcaatgataaataacgaagtatttatcataaagtgttttaatcaatcaatgtggttatcagattgaaggaatttggtttaatctatgtattcacaaaaatggtcgggaacagttggtatggaaacgtcaatgtactgttgatcataattgtttgccactgttcatcattttggccgcaattatttttaaactaattacatgtgcgcttgaaattcgtatgtatgttttttgcgtaatggaaatccgatcataatttaacacgatatcatcgatttaatatgaggattgaatgacttagcaatgcacgcgaccaacttaatatgaaaaatgaatgctgccatgggtattttttcggcaaagaattacaatactaagaaaatcgttcattttaacgtcaatgcagaaatttaactattttttgtcaattacagcatgatcgtgcttcgcttgtagagaatctcttctctcggtcatgccaacagactgggtggcgacatctcattggaccaatatggcagtagcaaccacctcgactatttcaagaagccaatatgaggcattaccaactctgtcacaagccaatcgcaggccattggaccacatttcaagagagcaatgctgtttggttgaatatctgaacagccgattgcaggtttaggagaatatcaatttctttcaatgcaggcgttgggacacaagtcatccaatgccagcattggttatatataaagcttgactcaatgcggaattgggcccattatggcggcgtccatgag--CAGT--AT----G-GCGTC--GTCC-AATGCAGG-CATTCGG-CGACTA----CA---A-ACTGATTCA------------------A-TGCAGGCA-TTGGAC-CAG--T--ATGG-C-G-T-CATC-----C---AATG--CAGACATT-GGG--CGACTAAACTGATCGGCCGAG---TA----TGGCGTA-ATTCAA--T-G-CAGGCA-TTGG------CCGAGT--A-TG----------G---AGT---C-GTCCAATGCAATCACTGG----G-T-GA--CTA-TGA----A----CTG-ATTC----A-ATGCA-GGCA------------------------------TCGTCCGA--------CTAT--------------GAA-----GT--GA-T-----------------------------TTA------A-TG--TAGGCATTAAT--TTGGT-GAAC----TATAGAG-TCGT--C-----C-A-AT-GC-Acgcgcgtaataatgc
gi|15 : ggcc--AT----G-GCGTT--TTCG-AATGCAGG-CGTTGA----AC-----GCAG--A-ACTGATTCA------------------GATTC-GACA-TAAGAC-CAC--T--GT-G-ggcactgaccgactcgaaagtcgtccagtgcaggcatttacattttaaagtaaaccaaatcctgacattgacgaactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|16 : tggATGCAGG-CGCTGGT-CGACTA----TG---A-ACTGATTCA------------------C-TGCAGGCA-TTGGGC-
gi|6 : cc-TATA---A-ACTGATTTA------------------A-TGCAGGCA-TTGGAC-CAG--T--AT-GGC-G-T-CATC-----CA--A-TG--CAGACATT-GGC--CGACTATAT-----------A---------------------------G-CAGGCA-ATGG------CCGAAT--A-T---------------GGT--GTCATTCAATGCAGGCATT----------GA----A-C-A----A----CG--CTTT----G-ATACg
gi|7 : tgacTA---A-ACTGGCCGC------------------AATG---GCACTTTGAG--AG--T--A-----------GTC-----CA--A-TG--CCTGCATT-G-G--CTCCTG-AC-----------A---AA----G----TG-ATCCAA--T-G-CCTGCA-TT-GA----ATC-AGTTCA-TA-G------CCA---G---------CCAATGCTAGTAGTAA----A-T-GA--CGC-C-AT---A----CTG-GTCT----A-ATGTC-TGCAT-TGA---AT-C-A--G--T--TTGT-A-TTCAACTAATGCC-T-GC-ATTAGAG---------GAC-----GC--CA-TAC---ACGG--------------------CCA------A-TGGCT-GC-----AT--T--G--AATCAA--TTTGTAC-TCGC--CCAATGC---CT-GC-AT---T--------G---G--AC-GAC------GCCA--T--A-C-TGGTCCA-ATGC-----CTTCATTGAATC-ATT--TTGTAGT-CGCTCTA-T---GCAAGCATT-G---AACGA-tctgctgaattgcaatgtatctttcaacagccaatgcatgcactggatgaatatctcatattggcctactttctcaggagccacatgcaattgcatgcctcaaataaacgtgtaccttaggacaatgcagacagtagtttacttttttcagagtcaatgaaagtattgatagaagcaaagctgagatagaatgacctgacatttgaggtctatgccttcttcagagtcattgcaagcactgaacttcttcctatgtgcagttagttcaagcattgcatgaccttctatctacagccaaagcagacggattta
gi|4 : agtatggcgA------------------AATGCCTGCA-CTGGAC-GAC--T--TTCG-A-G-T-CGGT-----CA--G-TG--CCTGCATT-GGA--CGACTCTAT-----------AGTTCA----C----CA-AATTAA--T-G-CCTACA-TT-AA----ATC-ACTTCA-TA-G------TCG---GA---------CGATGCCTGCATTGA----ATCAGT--TCA-T-A----G----TC--ACCC----A-GTGAT-TGCAT-TGG---A--CGA--C--TCCAT---A-CTCGGCCAATGCC-T-GC-ATT---G---------AA--------------------------------------------TT------A-CG--CCAT-----AC--TCGGCCGATCAG--TTTA--G-TCGC--CCA--AT-GTCT-GC-AT---T-------GG---ATGAC-G---------CCA--T--A-C-TGGTCCA-ATGCCT-GCA----TTGAATC-AGT--TTGTAGT-CGCCGAA-T---GCCTGCATTGG---A-CGA-gtttcgttagatatattttcctcttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|2 : ggcccagtatggcg------------------AATGCAGGCG-TTGGGA-CAC--A--A------G-T-CATC-----CA--A-TG--CCAGCATT-GG------TTATAT-----------A---TAAAGCT----TG-ACTCAA--T-G-C-GGAA-TTGGG----CCC-ATT--A-TG-G-------CG---G-----C-GTCCA-TG-AGGCATT-G----G-CGAT--CTA-C-A----A----CTG-ATTC----ATATGCAAGGCAT-TGG---G--C-A--G-----ATG--GCGTCGTCCAATG-C-G-GC-ATT---G---------TCA-----GC--TG-T-TAA-ACTGA-------------------TTC------A-TG--ACGG-----GCGATTGG----CCAAGTTTTGGCGGTCGT-------AC-A-AT-GC-AG---G-------CA---A--TT-GG-------TCTACTT-AA-C-TGATTCA-ATGC-A-GGCA---TTGGGCCTGT---ATGGCATCCGTCCCAAT---GCAGGCATT-G---GGCG--AC--TGTAAACT-----G--A---------ATTCAATG---CAG--GC-ATTG---GGCC-A-GTATGCGCGCGTAAT--AATGCacattttaaagtaaaccaaatcctgacattgacgaactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|2 : cactctgaattaaatttttttgtcaaattattttttttttatattaacaatcaatggtattaatagaatttgaatggaatatcatgtattgactttctactctcaatgataaataacgaagtatttatcataaagtgttttaatcaatcaatgtggttatcagattgaaggaatttggtttaatctatgtattcacaaaaatggtcgggaacagttggtatggaaacgtcaatgtactgttgatcataattgtttgccactgttcatcattttggccgcaattatttttaaactaattacatgtgcgcttgaaattcgtatgtatgttttttgcgtaatggaaatccgatcataatttaacacgatatcatcgatttaatatgaggattgaatgacttagcaatgcacgcgaccaacttaatatgaaaaatgaatgctgccatgggtattttttcggcaaagaattacaatactaagaaaatcgttcattttaacgtcaatgcagaaatttaactattttttgtcaattacagcatgatcgtgcttcgcttgtagagaatctcttctctcggtcatgccaacagactgggtggcgacatctcattggaccaatatggcagtagcaaccacctcgactatttcaagaagccaatatgaggcattaccaactctgtcacaagccaatcgcaggccattggaccacatttcaagagagcaatgctgtttggttgaatatctgaacagccgattgcaggtttaggagaatatcaatttctttc------------------AATGCCTGCA-TTGAATTCAG--T--TT-A-CAG-T-CGCC-----CA--A-TG--CCTGCATT-GGGA-CGGATGC-C-----------A---TA----C----AG-GCCCAA--T-G-CCTGCA-TT-GA----ATC-AGT--
gi|4 : cactctgaattaaatttttttgtcaaattattttttttttatattaacaatcaatggtattaatagaatttgaatggaatatcatgtattgactttctactctcaatgataaataacgaagtatttatcataaagtgttttaatcaatcaatgtggttatcagattgaaggaatttggtttaatctatgtattcacaaaaatggtcgggaacagttggtatggaaacgtcaatgtactgttgatcataattgtttgccactgttcatcattttggccgcaattatttttaaactaattacatgtgcgcttgaaattcgtatgtatgttttttgcgtaatggaaatccgatcataatttaacacgatatcatcgatttaatatgaggattgaatgacttagcaatgcacgcgaccaacttaatatgaaaaatgaatgctgccatgggtattttttcggcaaagaattacaatactaagaaaatcgttcattttaacgtcaatgcagaaatttaactattttttgtcaattacagcatgatcgtgcttcgcttgtagagaatctcttctctcggtcatgccaacagactgggtggcgacatctcattggaccaatatggcagtagcaaccacctcgactatttcaagaagccaatatgaggcattaccaactctgtcacaagccaatcgcaggccattggaccacatttcaagagagcaatgctgtttggttgaatatctgaacagccgattgcaggtttaggagaatatcaatttctttcaatgcaggcgttgggacacaagtcatccaatgccagcattggttatatataaagcttgactcaatgcggaattgggcccattatggcggcgtccatgaggcattggcgatctacaactgattcatatgcaaggcattgggcagatggcgtcgtccaatgcggcattgtcagctgttaaactgattcatgacgggcgattggccaagttttggcggtcgtacaatgcaggcaattggtctacttaATGCCTGCA-TTGAAT-CAG--TTCAT-A---G-T-CACC-----CA--G-TG--ATTGCATT-GGA--CGAC--TCC-----------A---TA----C----TC-GGCCAA--T-G-CCTGCA-TTGAATTACGCC-A-T--ACTC-G-GCCGATCA---GTTTAGTCGCCCAATGTCTGCATT-G----G-ATGA--CGC-C-AT---A----CTG-GTCC----A-ATGCC-TGCAT-TGA---AT-C-A--G--T--TTGT-A-GTCGCCGAATGCC-T-GC-ATT---G---------GA-------C--GA-CGCCATACTG--------------------gggccagtatgcgcgcgtaataatgc
gi|5 : ggccTGCATGTA-TTTGGCATAT--T--CT-GAC-G-T-CCTC-----CA--A-TG--CATGTATT-GGG--CA--TATTC-----------T---GA----CG---TC-ATCCAA--C-G-CAGGTAATTGG-------C-A-T--A-T---------TCT---GAC--GTCATGCAATGCAGGTATTTG----G-CAAATTCTA-A-A----G----TC--ATTC----A-ATACA-GACGT-T-----A--CTA--GACT--TTGA-A-GTCGTTCAATG-cgtccgactatgaagtgatttaatgtaggcattaatttggtgaactatagagtcgtccaatgcaggcactgaccgactcgaaagtcgtccagtgcaggcatttacattttaaagtaaaccaaatcctgacattgacgaactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|10 : CA-TTGG---CAC--T--TT-G-A-GGT-GGTC-----CA----TG--CCTGCATT-GAG--CGGCTTGACT----------A---AA----G----TG-ATC--A--T-G-CCTGCA-TCTGA----Agatttgcttcagaatctgttaatgcccgcattggataactttagagtaaaacaatgcatgcactgagaaaaagaatcgaacgacgcccgttctaggagaacattatantagagtaaaacaatgcatgcactgagaaaaatagtcaaacgacgcccgttctaggagaacattatgtgtacttgttccagcatttagacattaagacaaaaatgtatagtctaagttaaagtctaagttaattgcattcaggtacacaagtaaaatgttttcagcattttctcaaagtacattcaaatattcttaacttgaaaatactcttctaaaaaatacgctgatttgattttttttttttcaatttgctaaaacgtccattgaaattgctgaaaattttcgctagaattatgacagtgcgctagtgctttgcgatcgtaacaatttataacacataccgaaagttcgttattcaatttcaaaaatggat
gi|7 : AG--T--AT-GGC-G-T-CGTT-----CA--A-TG--CTTGCATA-GAG--CGACTA--C-----------A---AA----A----TG-ATTCAA--T-G-AAGGCA-TTGG-----ACC-AGT--A-TG-GCGTC----------------GTCCAATGCAGGCATTGG----G-C-GA--GTA-C-A----A----ATTGATTC----A-ATGCA-GCCAT-TGG---C--C-GT-G--T--ATG--GCGTCCTCTAATG-C-A-GGCATT---------------A-----GTTGAA-TACAA-ACTG--------------------ATTCA----A-TG--CAGAC----AT--T--A--GACCAG--TATGGCG-TCAT--TTA--CT-A-CTAGC-AT---T------------G--GC-TG-------GCTA--TGAA-C-TGATTCA-ATGC-A-GGCA---TTGGATC-Agcgccagtttagtttcgtagatatattcctctctttatatcaatcaacagaattgcttttttgctcatcaaaaataaaaccgactaatttcttagtgttcattagagcattatgaattgtaataaaaatgag
gi|16 : ATG--CAGGCGCT-GGT--CGACTATG------------A----A----C----TG-ATTCAC--T-G-CAGGCA-TTGGctttgtcaggagccaatgcaggcattggactactctcaaagtgccattgcggccagtttagtttcgttagatatattttcctcttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|6 : ccGACTATA------------A----A----C----TG-ATTTAA--T-G-CAGGCA-TTGGA-----CC-AGT--A-TG-GCGTC----------------ATCCAATGCAGACATT-G----G-CCGA--CTA-T-A----------T--A-----------GCA-GGCAA-TGG---C--CGA--A--T--ATG--GTGTCATTCAATG-C-A-GGCATT---G---------AAgcg
gi|6 : t-----------A---TA----T----TC-ATCCAG--T-G-CATGCA-TTGG-------C-TGT----TG-A-A------A---GAT--A-----CATTGCA---ATTCA----G-CAGA--GTATC-A----AAGCGTT--GTTC----A-ATGCC-TGCAT-TGAATGA--C-ACCA--T--AT------TCGGCCATTGCC-T-GCTATcaacgctttgatactctgctgaattgcaatgtatctttcaacagccaatgcatgcactggatgaatatctcatattggcctactttctcaggagccacatgcaattgcatgcctcaaataaacgtgtaccttaggacaatgcagacagtagtttacttttttcagagtcaatgaaagtattgatagaagcaaagctgagatagaatgacctgacatttgaggtctatgccttcttcagagtcattgcaagcactgaacttcttcctatgtgcagttagttcaagcattgcatgaccttctatctacagccaaagcagacggattta
gi|4 : tgactataaactgatttaatgcaggcattggaccagtatggcgtcatccaatgcagacattggccgactat-G-GCC--CAGTATGGC--GTCGTCCAATGCAGGCATTCG----G-C-GA--CTA-CAA----A----CTG-ATTC----A-ATGCA-GGCAT-TGG---AC-C-A--G--T--ATG--GCGTCATCCAATG-C-A-GACATT---G-----------G-----GC--GA-C-TAA-ACTGATCGGCCGAGTATGGCGTAATTCA-----A-TG--CAGGC----AT--T--G--GCCGAG--TATGGAG-TCGT--C-----C-A-AT-GC-AA---T-------CACTGG--GT-G--------ACTA--TGAA-C-TGATTCA-ATGC-A-GGC----ATCGTCCGACT--ATGAAGT-GATTTAA-T---GTAGGCATTAATTTGGTGA-AC--TAT-AG-------A--GTC-------GTCCAATG---CAG--GC-ACT----GA-C-C-G-ACTCGAAAGTCGTCCAGTGCAGGCA-----TT-ctcatattggcctactttctcaggagccacatgcaattgcatgcctcaaataaacgtgtaccttaggacaatgcagacagtagtttacttttttcagagtcaatgaaagtattgatagaagcaaagctgagatagaatgacctgacatttgaggtctatgccttcttcagagtcattgcaagcactgaacttcttcctatgtgcagttagttcaagcattgcatgaccttctatctacagccaaagcagacggattta
gi|16 : ATGCAGGCGCT-G----G-TCGA--CTA-TGA----A----CTG-ATTC----A-CTGCA-GGCAT-TGtacattttaaagtaaaccaaatcctgacattgacgaactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|2 : ccTGCAGG--TTTA----G-GAGA--ATATC-A----ATTT-CT---TTC----A-ATGCA-GGCGT-TGGG--A--C-A---------CA--A-GTCATCCAATG-C-C-AGCATT---G-----------------GT--TA-TATAT-AAAG--------------------CTTGACTCAA-TG--C-GG-----AA--TTGG--GCCCAT--TATGGCG-GCGT--CCA---T-G-AG-GC-AT---T------------G--GC-GA-------TCTA--C-AA-C-TGATTCATATGCAA-GGCA---TTGGGC--A-G--ATGGCGT-CGTCCAAT----GCG-GCATT------GTCA-GC--TGTTAA-------ACTG---------ATTCA-TGACG--G--GCGATTG---GC-C-AAGTTTTGGCG-GTCGTACAATGCAGGCAA----TT-G-GTC-T-AC----------------TTA-A---CT-GATTCA-ATGCAGGC-ATTGGGCCT--GTAT-G-GCA-TCCGTCCCAATGCAGGCAT-----T-GGGC-GACTGTA--A-AC-----TGA--------------------ATTC--AATGCAGG--C-ATTGGG----CCA----GTA---T-----GC-GC-G-CG-TAATAATGCggcg
gi|6 : cactctgaattaaatttttttgtcaaattattttttttttatattaacaatcaatggtattaatagaatttgaatggaatatcatgtattgactttctactctcaatgataaataacgaagtatttatcataaagtgttttaatcaatcaatgtggttatcagattgaaggaatttggtttaatctatgtattcacaaaaatggtcgggaacagttggtatggaaacgtcaatgtactgttgatcataattgtttgccactgttcatcattttggccgcaattatttttaaactaattacatgtgcgcttgaaattcgtatgtatgttttttgcgtaatggaaatccgatcataatttaacacgatatcatcgatttaatatgaggattgaatgacttagcaatgcacgcgaccaacttaatatgaaaaatgaatgctgccatgggtattttttcggcaaagaattacaatactaagaaaatcgttcattttaacgtcaatgcagaaatttaactattttttgtcaattacagcatgatcgtgcttcgcttgtagagaatctcttctctcggtcatgccaacagactgggtggcgacatctcattggaccaatatggcagtagcaaccacctcgactatttcaagaagccaatatgaggcattaccaactctgtcacaagccaatcgcaggccattggaccacatttcaagagagcaatgctgtttggttgaatatctgaacagccgatGA--CTA-T-A----AA---CTG-ATTT----A-ATGCA-GGCAT-TGG---AC-C-A--G--T--ATG--GCGTCATCCAATG-C-A-GACATT---G-----------------GC-------C-G-ACTA--------------------TAT------A--G--CAGGCA---AT-----G--GCCGAA--TATGGTG-TCAT--TCAATGC-A-G--GC-AT---T-------GA---A--
gi|2 : t----A-ATGCC-TGCAT-TGA---ATTC-A--G--T--TTAC-A-GTCGCCCAATGCC-T-GC-ATT---G---------GGACGGATGC--CA-TACAcaacgctttgatactctgctgaattgcaatgtatctttcaacagccaatgcatgcactggatgaatatctcatattggcctactttctcaggagccacatgcaattgcatgcctcaaataaacgtgtaccttaggacaatgcagacagtagtttacttttttcagagtcaatgaaagtattgatagaagcaaagctgagatagaatgacctgacatttgaggtctatgccttcttcagagtcattgcaagcactgaacttcttcctatgtgcagttagttcaagcattgcatgaccttctatctacagccaaagcagacggattta
gi|4 : cactctgaattaaatttttttgtcaaattattttttttttatattaacaatcaatggtattaatagaatttgaatggaatatcatgtattgactttctactctcaatgataaataacgaagtatttatcataaagtgttttaatcaatcaatgtggttatcagattgaaggaatttggtttaatctatgtattcacaaaaatggtcgggaacagttggtatggaaacgtcaatgtactgttgatcataattgtttgccactgttcatcattttggccgcaattatttttaaactaattacatgtgcgcttgaaattcgtatgtatgttttttgcgtaatggaaatccgatcataatttaacacgatatcatcgatttaatatgaggattgaatgacttagcaatgcacgcgaccaacttaatatgaaaaatgaatgctgccatgggtattttttcggcaaagaattacaatactaagaaaatcgttcattttaacgtcaatgcagaaatttaactattttttgtcaattacagcatgatcgtgcttcgcttgtagagaatctcttctctcggtcatgccaacagactgggtggcgacatctcattggaccaatatggcagtagcaaccacctcgactatttcaagaagccaatatgaggcattaccaactctgtcacaagccaatcgcaggccattggaccacatttcaagagagcaatgctgtttggttgaatatctgaacagccgattgcaggtttaggagaatatcaatttctttcaatgcaggcgttgggacacaagtcatccaatgccagcattggttatatataaagcttgactcaatgcggaattgggcccattatggcggcgtccatgaggcattggcgatctacaactgattcatatgcaaggcattgggcagatggcgtcgtccaatgcggcattgtcagctgttaaactgattcatgacgggcgattggccaagttttggcggtcgtacaatgcaggcaattggtctacttaactgattcaatgcaggcattgggcc--C-A--G--T--ATG--GCGTCGTCCAATG-C-A-GGCATTC--G-----------------GC--GACTACAA-ACTG--------------------ATTCA----A-TG--CAGGC----AT--T--G--GACCAG--TATGGCG-TCAT--CCAATGC-A-G--AC-AT---TGGGCGACTA---A--ACTGATCGGCCGAGTA--T-GG-CGTAATTCA-ATGC-A-GGCA---TTGGCCG-AGT--ATGGAGT-CGTCCAA-T---GCAATCACT-G---GGTG--AC--TATGAA-------CT-G---------ATTCAATG---CAG--GC-ATCGTCCGA-C----TATGAA---GTGATTTAATGTAGGCATTAATTT-G-G-T-GAAC---------------TATA-GAGTCG----TCCAATGCAGGC-ACT-GACCG-ACT-C-G-AAA-GTCGT-CCAGTGCAGGCA------T-gggccagtatgcgcgcgtaataatgc
gi|7 : ggcc-A--G--T--ATG--GCGTCGTTCAATG-C-TTGC-AT--------------AGA-----GC--GACTACAA-AATG--------------------ATTCA----A-TG--AAGGC----AT--T--G--GACCAG--TATGGCG-TCGT--CCAATGC-A-G--GC-AT---T--------G---G--GC-GA-------G-TA--C-AAAT-TGATTCA-ATGCA---GCCA--TTGG-CC-GTGT-ATGGCGT-CCTCTAA-T---GCAGGCATTAG----TTGA-AT---ACAAA-------CT-G---------ATTCAATG---CAG--AC-ATTA---GACC-A-GTAT---GGCGTCATTTACTACTAGCA-----TT-G-G-CTG-GC-----------------TATGAA-CT-GATTCA-ATGCAGGC-ATT-GGATC-ACTTT-G-TCA-GGAG--CCAATGCAGGCA------T-TGG--ttacattttaaagtaaaccaaatcctgacattgacgaactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|7 : G--A-GTAGTCCAATG-CCT-GC-ATT---GGCTCCTGACAAA-----GT--GA-TCCAA---TG--------------------CCT--------------GC-----AT--T--G--AATCAG--T-------TCATAGCCA--GCCA-AT-GCTAG---TAG-----TA---A--AT-GAC------GCCA--T-A--C-TGGTCTA-ATGTCT-GCA----TTGAATC-AGT--TTG-----TATTCAACTAATGCCTGCATTAG---AG-GACGC--CATACA-------C--G---------GC-CAATG-----GCTGC-ATTG---AATC-A-ATTTGTA--C-TCGCCCAATGCCTGCA-----TT-G-GAC-G-AC----------------GCC-ATA-CT-GGTCCA-ATGCCTTC-ATT-GAATC-ATTTT-G--TA-GTCGC-TCTATGCAAGCA------T-actactctcaaagtgccattgcggccagtttagtttcgttagatatattttcctcttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|6 : agtatggcgtcgttca-TATAA-ACTGA-------------------TTT------AATG--CAGGC----AT--T--G--GACCAG--TATGGCG-TCAT--CCAATGC-A-G--AC-AT---T------------G--GC-CG-------ACTA--T-A----TAG--CA-G-GCAATGGC----C--GA---AT---ATGGTGT-CATTCAA-T---GCAGGCATT--------GA-AC--AACtcaaagtgccattgcggccagtttagtttcgttagatatattttcctcttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|5 : tgac------A-TG--TA--------T--TTGG--CAT-AT--TCTGACG-TCCT--CCA-------AT-GC-ATGTAT-------TG---G--GC-AT-------ATTC--T-GA-CGTCATCCA-ACGC-A-GGTAA--TTGG--C-ATATTCTGACGT-CATGCAA-T---GCAGGTATTTG----GCAA-AT---TCTAA-------A--GTC-------ATTCAATACAGACG--TT-ACTA---GA-C----TTTGAA---GTCGTTCAATGgctttgatactctgctgaattgcaatgtatctttcaacagccaatgcatgcactggatgaatatctcatattggcctactttctcaggagccacatgcaattgcatgcctcaaataaacgtgtaccttaggacaatgcagacagtagtttacttttttcagagtcaatgaaagtattgatagaagcaaagctgagatagaatgacctgacatttgaggtctatgccttcttcagagtcattgcaagcactgaacttcttcctatgtgcagttagttcaagcattgcatgaccttctatctacagccaaagcagacggattta
gi|4 : tgcG--GCCCAG--TATGGCG-TCGT--CCAATGC-A-G--GC-AT---T-------C----G--GC-G--------ACTA--CAAA-C-TGATTCA-ATGC-A-GGCA---TTGGACC-AGT--ATGGCGT-CATCCAA-T---GCAGACATT-G---GGCG--ACTAAACTGATCGGCCGA--GTATGGCGTAATTCAATG---CAG--GC-ATTG---GC-CGA-GTATGGA---GTCGTCCAATGCAATCA-----CTGG-G-T-G-AC-----------------TATGAA-CT-GATTCA-ATGCAGGC-ATC-GTCCG-ACTAT-G-A-A-GTGAT-TTAATGTAGGCATTAATTT-GGT--GA--ACT--ATAG-----AGT--C-----------------GTCC--AATGCAGG--C-ACT-GA----CCGACTCGAA---A-----G--TC-G----T-CCAGTGCAGGCA-Tgatttgcttcagaatctgttaatgcccgcattggataactttagagtaaaacaatgcatgcactgagaaaaagaatcgaacgacgcccgttctaggagaacattatantagagtaaaacaatgcatgcactgagaaaaatagtcaaacgacgcccgttctaggagaacattatgtgtacttgttccagcatttagacattaagacaaaaatgtatagtctaagttaaagtctaagttaattgcattcaggtacacaagtaaaatgttttcagcattttctcaaagtacattcaaatattcttaacttgaaaatactcttctaaaaaatacgctgatttgattttttttttttcaatttgctaaaacgtccattgaaattgctgaaaattttcgctagaattatgacagtgcgctagtgctttgcgatcgtaacaatttataacacataccgaaagttcgttattcaatttcaaaaatggat
gi|7 : AG--TATGGCG-TCGT--TCA-------AT-GC-TT---G-------CATAGA--GC-GA--------CTA--C-AA-AATGATTCA-ATG-AA-GGCA---TTGGACC-AGT--ATGGCGT-CGTCCAAT----GCAGGCATTGG----GCGA-GT--A-CAAA-------TT-G---------ATTCAATGCA---G--CC-ATTG---GC-C-GTGTATGG---CGTCCTCTAATGCAGGCA-----TT-A-GTT-G------------------AATACAAA-CT-GATTCA-ATGCAGAC-ATT-AGACC-AGTAT-G-GC--GTCAT-TTACTACTAGCA------T-TGG------CTG--GCTA-----TGAACTG----------------ATTC--AATGCAGG--C-ATT-GGATCACTT---TGTC---A-----G--GA-G-CC-----AATGCAGGCA-Tttacattttaaagtaaaccaaatcctgacattgacgaactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|6 : -------ACTA--T-AAAC-TGATTTA-ATGC-A-GGCA---TTGGACC-AGT--ATGGCGT-CATCCAA-T---GCAGACATT-G---GCCGA----------------------------------CTATATAGCAG--GC-AATG---GC-CGA-ATAT---GGTGTCATTCAATGCAGGCA-----TT-G-tggactactctcaaagtgccattgcggccagtttagtttcgttagatatattttcctcttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|16 : tg-------ACTA--TGAA-C-TGATTCA-CTGC-A-GGCA---TTGGGCaacaacgctttgatactctgctgaattgcaatgtatctttcaacagccaatgcatgcactggatgaatatctcatattggcctactttctcaggagccacatgcaattgcatgcctcaaataaacgtgtaccttaggacaatgcagacagtagtttacttttttcagagtcaatgaaagtattgatagaagcaaagctgagatagaatgacctgacatttgaggtctatgccttcttcagagtcattgcaagcactgaacttcttcctatgtgcagttagttcaagcattgcatgaccttctatctacagccaaagcagacggattta
gi|4 : ccatgcaggcgctggtcgGGCCC-AGT--ATGGCGT-CGTCCAAT----GCAGGCATTCG----GCGA--C--TACAAA-------CT-G---------ATTCAATGCA---G--GC-ATTG---GA-CCA-GTATGG---CGTCATCCAATGCAGACA-----TTGG-G-C-G-ACTAAACTGATCGGCCGAGTA-TGG-CGTAATTCA-ATGCAGGC-ATT-GGCCG-AGTAT-G-G-A-GTCGT-CCAATGCAATCAC-----T-GG-------GTG--ACTA-----TGAACTG----------------ATTC--AATGCAGG--C-ATC-GT----CCG---ACTA---T-----GAAGT-G--A-T-TTAATGTAGGCATTAATTTGGTG--A-------------ACTA--TA-GA-GTC-----GTCCA-A-TGCAGGCACTg
gi|7 : --ATGGCGT-CGTTCAAT----GCTTGCAT-AG---AGCGA--C--TACAAA-------AT-G---------ATTCAATGAA---G--GC-ATTG---GA-CCA-GTATGG---CGTCGTCCAATGCAGGCA-----TTGG-G-C-G------------------AGTACAAA-TT-GATTCA-ATGCAGCC-ATT-GGCCG-TGTAT-G-GC--GTCCT-CTAATGCAGGCA------T-TAGTTGA--AT---ACAAAC---TG---------------------ATTC--AATGCA-GA-C-ATTAGA----CCA----GTA---T-----G--GC-G-TCAT-TTACTACTAGCATTGGC----TG----------------GCTA--TG-AAC-TG-----ATTCA-A-TGCAGGCATTGGAgaccgactcgaaagtcgtccagtgcaggcatttacattttaaagtaaaccaaatcctgacattgacgaactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|6 : agt--G---------ATTTAATGCA---G--GC-ATTG---GA-CCA-GTATGG---CGTCATCCAATGCAGACA-----TT-G-GCC-G-AC---------------TATA-TA--------------GCAGGC-AAT-GGCCG-AATAT-G-GT--GTCAT-TCAATGCAGGCA------T-TG---------A--ACAACGCTTTGA--T-----------------ACTC----TGCT-G--A-ATT--G----CAA---TGTA---TCTTTCA--ACAG-CC-----AATGCATGCACTGGA----TG--A-------------Atcactttgtcaggagccaatgcaggcattggactactctcaaagtgccattgcggccagtttagtttcgttagatatattttcctcttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|6 : tgactataaactTGAGAAAG------TAG---GC-C-A-ATATGAGATATTCATCCAGTGCATGCA-----TT-G-G-C----T---------------GTTG-AAA----GATACA-TTGCAAT---TC-AGCAG-AGTATCA-AAGCGTTGT-TCAATGCCTGCA------T---T--GA--ATG--AC-A-----CCA--T-----------------ATTCtatctcatattggcctactttctcaggagccacatgcaattgcatgcctcaaataaacgtgtaccttaggacaatgcagacagtagtttacttttttcagagtcaatgaaagtattgatagaagcaaagctgagatagaatgacctgacatttgaggtctatgccttcttcagagtcattgcaagcactgaacttcttcctatgtgcagttagttcaagcattgcatgaccttctatctacagccaaagcagacggattta
gi|4 : tgactataaactgatttaatgcaggcattggaccagtatggcgtcatccaatgcagacattggccgactatatagcaggcaatggcc-C-A-GTATGG---CGTCGTCCAATGCAGGCA-----TTCG-G-C-G-AC-----------------TACAAA-CT-GATTCA-ATGCAGGC-ATT-GGACC-AGTAT-G-GC--GTCAT-CCAATGCAGACAT-----T-GGGC-GA--CTA--A-AC-----TGA--TCGGCCGAGTATGGCGTAATTC--AATGCAGG--C-ATT-GG----CCG---AGTA---T-----G--GA-G-TCGT-CCAATGCAATCACTGGG----TG----------------ACTA--TG-AAC-TG-----ATTCA-A-TGCAGGCATC-GTCCGAC--TATGAAGTG--ATTTAA-TGTAGGCATTAATTTGGTGAACTATAGAGTCGTCC-AATG-CAGGCA-CTGACCGACTC---GAA-AGTCGTCCAGTGCA-GGCATTTACAggagccacatgcaattgcatgcctcaaataaacgtgtaccttaggacaatgcagacagtagtttacttttttcagagtcaatgaaagtattgatagaagcaaagctgagatagaatgacctgacatttgaggtctatgccttcttcagagtcattgcaagcactgaacttcttcctatgtgcagttagttcaagcattgcatgaccttctatctacagccaaagcagacggattta
gi|7 : ggcc-A-GTATGG---CGTCGTTCAATGCTTGCA-----TA-GAG-C-G-AC---------------TACA-AAA-TG--ATTCA-ATGAAGGC-ATT-GGACC-AGTAT-G-GCG--TCGT-CCAATGCAGGCA------TTGGGC-GA--GTA---CAAAT---TGA--T-------------------TCAA--TGCA-G--CCATT-GG----CCG---TGTA---T-----G--GC-GTCC-T-CTAATGCAGGCATTAGT----TG----------------AATA--CA-AAC-TG-----ATTCA-A-TGCAGACATTAG-AC--CAGTAT--GGCGTCATTT-ACTACTAGCATTGGC-TGG----CTATGAACTGAT-TCAATG-CAGGCATTGGATC-ACTTttttaaagtaaaccaaatcctgacattgacgaactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|5 : GACGTCCTCCAATGCATGTA-----TT-G-G-G-C-AT---------------ATTC-TGA-CGTCATCCA-ACGCAGGTAATT-GGCAT-ATTCT-G-AC--GTCAT-GCAATGCAGGTA------T-tgtcaggagccaatgcaggcattggactactctcaaagtgccattgcggccagtttagtttcgttagatatattttcctcttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|15 : tgcatgtatttggcatattctGGCGTTTTCGAATGCAGGCG-----TT-G-----A-AC----------------GCA-GAA-CT-GATTCttggcaaattctaaagtcattcaatacagacgttactagactttgaagtcgttcaatggatttgcttcagaatctgttaatgcccgcattggataactttagagtaaaacaatgcatgcactgagaaaaagaatcgaacgacgcccgttctaggagaacattatantagagtaaaacaatgcatgcactgagaaaaatagtcaaacgacgcccgttctaggagaacattatgtgtacttgttccagcatttagacattaagacaaaaatgtatagtctaagttaaagtctaagttaattgcattcaggtacacaagtaaaatgttttcagcattttctcaaagtacattcaaatattcttaacttgaaaatactcttctaaaaaatacgctgatttgattttttttttttcaatttgctaaaacgtccattgaaattgctgaaaattttcgctagaattatgacagtgcgctagtgctttgcgatcgtaacaatttataacacataccgaaagttcgttattcaatttcaaaaatggat
gi|2 : tggatGTCGCCCAATGCCTGCA-----TT-G-G----------------------------GA-CG-GATGCC-ATACAGGC-agattcgacataagaccactgtg
gi|4 : cactctgaattaaatttttttgtcaaattattttttttttatattaacaatcaatggtattaatagaatttgaatggaatatcatgtattgactttctactctcaatgataaataacgaagtatttatcataaagtgttttaatcaatcaatgtggttatcagattgaaggaatttggtttaatctatgtattcacaaaaatggtcgggaacagttggtatggaaacgtcaatgtactgttgatcataattgtttgccactgttcatcattttggccgcaattatttttaaactaattacatgtgcgcttgaaattcgtatgtatgttttttgcgtaatggaaatccgatcataatttaacacgatatcatcgatttaatatgaggattgaatgacttagcaatgcacgcgaccaacttaatatgaaaaatgaatgctgccatgggtattttttcggcaaagaattacaatactaagaaaatcgttcattttaacgtcaatgcagaaatttaactattttttgtcaattacagcatgatcgtgcttcgcttgtagagaatctcttctctcggtcatgccaacagactgggtggcgacatctcattggaccaatatggcagtagcaaccacctcgactatttcaagaagccaatatgaggcattaccaactctgtcacaagccaatcgcaggccattggaccacatttcaagagagcaatgctgtttggttgaatatctgaacagccgattgcaggtttaggagaatatcaatttctttcaatgcaggcgttgggacacaagtcatccaatgccagcattggttatatataaagcttgactcaatgcggaattgggcccattatggcggcgtccatgaggcattggcgatctacaactgattcatatgcaaggcattgggcagatggcgtcgtccaatgcggcattgtcagctgttaaactgattcatgacgggcgattggccaagttttggcggtcgtacaatgcaggcaattggtctacttaactgattcaatgcaggcattggGTCGCCCAATGTCTGCA-----TT-G-GAT-G-AC----------------GCC-ATA-CT-GGTCCA-ATGCCTGC-ATT-GAATC-AGTTT-G--TA-GTCGC-CGAATGCCTGCA------T-TGG--tgtaaactgaattcaatgcaggcattgggccagtatgcgcgcgtaataatgc
gi|16 : ggcccagtatggcgtcgtATGCAGGCG-----CT-G-GTC-G-AC-----------------TATGAA-CT-GATTCA-CTGCAGGC-ATT-GGtaaactgatcggccgagtatggcgtaattcaatgcaggcattggccgagtatggagtcgtccaatgcaatcactgggtgactatgaactgattcaatgcaggcatcgtccgactatgaagtgatttaatgtaggcattaatttggtgaactatagagtcgtccaatgcaggcactgaccgactcgaaagtcgtccagtgcaggcatttacattttaaagtaaaccaaatcctgacattgacgaactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|16 : ccCC-ATGCAGGC-GCT-GGTCG-ACTAT-GAACT-G--AT-TCACTGCAGGCA------T-TGG--Ggcg
gi|2 : -ATGCCTGC-ATT-GAATTCAGT-T-T-ACA-GTCGC-CCAATGCCTGCA------T-TGG--GA--cg
gi|5 : cactctgaattaaatttttttgtcaaattattttttttttatattaacaatcaatggtattaatagaatttgaatggaatatcatgtattgactttctactctcaatgataaataacgaagtatttatcataaagtgttttaatcaatcaatgtggttatcagattgaaggaatttggtttaatctatgtattcacaaaaatggtcgggaacagttggtatggaaacgtcaatgtactgttgatcataattgtttgccactgttcatcattttggccgcaattatttttaaactaattacatgtgcgcttgaaattcgtatgtatgttttttgcgtaatggaaatccgatcataatttaacacgatatcatcgatttaatatgaggattgaatgacttagcaatgcacgcgaccaacttaatatgaaaaatgaatgctgccatgggtattttttcggcaaagaattacaatactaagaaaatcgttcattttaacgtcaatgcagaaatttaactattttttgtcaattacagcatgatcgtgcttcgcttgtagagaatctcttctctcggtcatgccaacagactgggtggcgacatctcattggaccaatatggcagtagcaaccacctcgactatttcaagaagccaatatgaggcattaccaactctgtcacaagccaatcgcaggccattggaccacatttcaagagagcaatgctgtttggttgaatatctgaacagccgattgcaggtttaggagaatatcaatttctttcaatgcaggcgttgggacacaagtcatccaatgccagcattggttatatataaagcttgactcaatgcggaattgggcccattatggcggcgtccatgaggcattggcgatctacaactgattcatatgcaaggcattgggcagatggcgtcgtccaatgcggcattgtcagctgttaaactgattcatgacgggcgattggccaagttttggcggtcgtacaatgcaggcaattggtctacttaactgattcaatgcaggcattgggcctgtatggcatccgTGCATGT-ATTTGGCAT-ATTCT-G-ACG--TCCT-CCAATGCATGTA------T-TGG--GC--ATATTCTGA-----CGT--C-----------------ATCC--AACGCA-GGTA-ATT-GG----C------ATATTCT-----G--AC-G-TCAT-GCAATGCAGGTA-T--T----TGGCA-------------AATT--CT-AAAGTC-----ATTCA-A-TACAGACGTTAtgggccagtatgcgcgcgtaataatgc
gi|5 : TGCATGC-ATT-GTTTT-ACTCT-A-A-A-GTTAT-CCAATGCGGGCA------T-ctagactttgaagtcgttcaatggatttgcttcagaatctgttaatgcccgcattggataactttagagtaaaacaatgcatgcactgagaaaaagaatcgaacgacgcccgttctaggagaacattatantagagtaaaacaatgcatgcactgagaaaaatagtcaaacgacgcccgttctaggagaacattatgtgtacttgttccagcatttagacattaagacaaaaatgtatagtctaagttaaagtctaagttaattgcattcaggtacacaagtaaaatgttttcagcattttctcaaagtacattcaaatattcttaacttgaaaatactcttctaaaaaatacgctgatttgattttttttttttcaatttgctaaaacgtccattgaaattgctgaaaattttcgctagaattatgacagtgcgctagtgctttgcgatcgtaacaatttataacacataccgaaagttcgttattcaatttcaaaaatggat
gi|6 : tgcatgtatttggcatattctgacgtcctccaatgcatgtattgggcatattctgacgtcatccaacgcaggtaattggcatattctgacgtcatgcaatgcaggtatttggcaaattctaaagtcattcaatacagacgttactagactttgaagtcgttcaatggatttgcttcagaatctgttaAATGCA-GG-C-ATT-GGA---CCA----GTA---T-----G--GC-G-TCAT-CCAATGCAGACATTGGC----CG--ACTATATAGCAGGCAATGGCCG-AATATGGTGTCATTCA-A-TGCAGGCATT-GAACAACctgagaaaaagaatcgaacgacgcccgttctaggagaacattatantagagtaaaacaatgcatgcactgagaaaaatagtcaaacgacgcccgttctaggagaacattatgtgtacttgttccagcatttagacattaagacaaaaatgtatagtctaagttaaagtctaagttaattgcattcaggtacacaagtaaaatgttttcagcattttctcaaagtacattcaaatattcttaacttgaaaatactcttctaaaaaatacgctgatttgattttttttttttcaatttgctaaaacgtccattgaaattgctgaaaattttcgctagaattatgacagtgcgctagtgctttgcgatcgtaacaatttataacacataccgaaagttcgttattcaatttcaaaaatggat
gi|15 : tgactataaactgattt---TGGA---T-----G--GC-G-TT-TTCGAATGCAGGC----GT----TG----------------AACG--CAGAAC-TG-----ATTCAGA-TTC-GACATAAG-ACCACTGTgctttgatactctgctgaattgcaatgtatctttcaacagccaatgcatgcactggatgaatatctcatattggcctactttctcaggagccacatgcaattgcatgcctcaaataaacgtgtaccttaggacaatgcagacagtagtttacttttttcagagtcaatgaaagtattgatagaagcaaagctgagatagaatgacctgacatttgaggtctatgccttcttcagagtcattgcaagcactgaacttcttcctatgtgcagttagttcaagcattgcatgaccttctatctacagccaaagcagacggattta
gi|16 : ATGCAGGCGCTGGT----CG----------------ACTA--TG-AAC-TG-----ATTC--ACTGCAGGCATTGGg
gi|6 : ccTA--TA-AAC-TG-----ATTT--AATGCAGGCATTGGA--C-CAGTAT--GGCGTCATCCAA-TGCAGACATTGGC-CGA----CTATgcg
gi|6 : tgacTGA----CTATAAACTGAT-TTAATGC-AGGCATTGGACC-Aatagcaggcaatggccgaatatggtgtcattcaatgcaggcattgaacaacgctttgatactctgctgaattgcaatgtatctttcaacagccaatgcatgcactggatgaatatctcatattggcctactttctcaggagccacatgcaattgcatgcctcaaataaacgtgtaccttaggacaatgcagacagtagtttacttttttcagagtcaatgaaagtattgatagaagcaaagctgagatagaatgacctgacatttgaggtctatgccttcttcagagtcattgcaagcactgaacttcttcctatgtgcagttagttcaagcattgcatgaccttctatctacagccaaagcagacggattta
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): GCAAGTTGCCTCAGAGTTATTTGCAATCGTTATAACAATAAGACATTTATTATAAATAATGTGTTCAAATAAAGTAGTTTTTGGATAATATTAAAAAATCAGGATTGGGCATAAAATATTTTGTCACACT
Unaligned ( gi|18 ): GGTCTCTTCTAAATCTGTTAACGATATGGTCAAGGTATTTAGGGAC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 11 11111111 222 333333333 1111111 2222 1111 1111 11111111 111 1111 111 333333 11 11 11 1 1 1 1 1 1 111 1 111 1 2222 111 1111111 1 5555555 11 222222222 1 2222 22 222222222 111 2 1 11 1 111 1 11 2222222 1 1 1 1 1 11 11 222 1 4444 11 2 222 11 2222 444444 22 1 2 33333333333333333333333333333333333333333333333333333333333333 222 222 333 11 11 11 55555555555555555 11 1 555555555 1 22 11 111 777777777777777777 22 1 1 8888888888 11 88888888888888888 222 22 2 1 222222 333 5555555 11 2222 2 11 11 99999999999999999999999999999999999 1 33 1 11 333 1 1 11 33333333 1 22 1 11 1111 1 1 1 2 2 1 1 1 1 1 2 4444444444444 1 22 222 555555 2 1 5555555555 1 1 22 11 11 2 1 2 1 1 22 222 222 1 1 2222 222 1 11111 111 44444 22 666666666666666666666666666666666666666 111 111111 6666666666 22 3333 11 1 11 222222222222 11 1 11 1 4444444444444444444 1
lowQualScore : 33 22 11 8 33333333 6 99 6 3 555 6 99 888888888 6 5 8888888 2222 5 0000 9999 5 66 5 5 5 11111111 000 2222 5 0 1 99 555 111111 1 8 11 8 00 8 44 0 2 0 0 0 4 2 0 2 0 1 777 0 0 555 0 1111 444 7777777 0 3 5555555 33 777777777 0 1111 33 666666666 111 0 0 11 2 0 777 1 3 0 33 0000000 0 5 0 3 3 88 44 1 6 888 5 0000 22 7 7 3 1 88 555 1 6 44 8888 7 1 777777 888 22 22 88 2 6 44 3 22222222222222222222222222222222222222222222222222222222222222 666 777 6 0 777 6 22 3333 44 6 33 44444444444444444 33 3 88 22 777777777 1 7 1 44 6 00 44 333 0 666666666666666666 1 55 2 2 5 6 9999999999 88 00000000000000000 2 666 77 0 5 2 4 3 77 7 444444 333 6 6666666 88 8888 6 33 88 7 33333333333333333333333333333333333 3 88 3 88 222 3 0 33 77777777 3 1 6 11 6 4 7 88 6 7777 7 6 6 3 3 1 3 3 1 0 5 2 2 2 1 7 77 5 5 88 5 0 9999999999999 2 2 5 4 2 1 6 2 3 3 4 77 8888 3 000 4 555555 0 5 55 0000000000 5 2 5 66 55 6 1 6 6 1 2 44 2 55 2 3 2 88 3 5 4 3 0 2 3 3 00 7 3 222 333 9 3 7 3 3 9 44 3 3333 333 0 0 77777 1 3 111 66 55555 8 0 0 0 8 5 1 66 3 000000000000000000000000000000000000000 111 888888 0 8 8 1111111111 1 3 1 00 8 8 0 6 3333 3 33 0 2 8 3 22 666666666666 11 2 6 0 33 2 0 4444444444444444444 3 3
lowQualScore : .. .. .. . ........ . .. . . ... . .. ......... . . ....... .... . .... .... . .. . . . ........ ... .... . . . .. ... ...... . . .. . .. . .. . . . . . . . . . . . ... . . ... . .... ... ....... . . ....... .. ......... . .... .. ......... ... . . .. . . ... . . . .. ....... . . . . . .. .. . . ... . .... .. . . . . .. ... . . .. .... . . ...... ... .. .. .. . . .. . .............................................................. ... ... . . ... . .. .... .. . .. ................. .. . .. .. ......... . . . .. . .. .. ... . .................. . .. . . . . .......... .. ................. . ... .. . . . . . .. . ...... ... . ....... .. .... . .. .. . ................................... . .. . .. ... . . .. ........ . . . .. . . . .. . .... . . . . . . . . . . . . . . . . .. . . .. . . ............. . . . . . . . . . . . .. .... . ... . ...... . . .. .......... . . . .. .. . . . . . . .. . .. . . . .. . . . . . . . . .. . . ... ... . . . . . . .. . .... ... . . ..... . . ... .. ..... . . . . . . . .. . ....................................... ... ...... . . . .......... . . . .. . . . . .... . .. . . . . .. ............ .. . . . .. . . ................... . .
lowQualScore : 88 22 00 0 99999999 7 22 7 3 000 7 88 222222222 7 7 6666666 6666 0 6666 4444 0 99 0 0 0 88888888 000 3333 7 1 7 22 888 666666 0 0 00 0 88 0 66 0 5 0 0 0 2 0 0 0 0 0 000 0 2 888 0 2222 888 5555555 0 2 0000000 88 888888888 0 2222 88 000000000 000 0 0 22 0 0 555 0 2 0 88 8888888 0 0 0 3 3 33 77 0 7 777 0 7777 77 3 3 3 0 33 777 0 7 33 7777 3 0 000000 333 00 00 33 0 7 77 3 00000000000000000000000000000000000000000000000000000000000000 000 333 7 7 777 7 77 7777 77 7 33 77777777777777777 88 3 33 00 777777777 0 3 0 33 7 77 00 777 7 000000000000000000 0 33 0 5 0 0 0000000000 00 00000000000000000 5 555 55 0 5 5 0 7 77 3 777777 777 7 7777777 33 3333 7 00 33 3 00000000000000000000000000000000000 3 33 3 33 333 3 0 88 77777777 3 0 7 77 7 0 3 33 7 3333 3 7 7 3 3 0 3 0 0 0 5 5 5 5 0 0 00 0 0 55 0 0 5555555555555 5 5 5 0 5 0 0 5 0 0 0 55 5555 0 555 0 000000 0 5 55 5555555555 0 5 0 00 55 0 0 0 0 0 5 55 5 55 5 0 5 55 0 0 0 0 0 5 3 3 77 3 7 333 333 0 3 3 3 7 2 22 2 2222 333 0 8 44444 0 2 000 00 44444 0 8 8 6 0 0 0 66 2 111111111111111111111111111111111111111 888 666666 8 0 0 0000000000 0 7 8 11 0 0 8 4 0000 2 88 0 5 8 2 55 222222222222 55 5 5 0 88 0 0 3333333333333333333 3 0
consensus : ACTCTGAACT--AATATTT--TTTT-GTCTCA-A--T-ATTTT--TT-CATAATAT---CGATC-AAT-TGTATTAA--------AGAGATTTGAAATGGAA-TAT-------TGACTTTTACACTCTCAAAATGATAAA-A----AC--G-GAGTTAAT-TT--ATCAT-AA-A-GTT---GTTGTTTT---AATCA--CA-TATGAGT--TATCCAGATT----GAAAAGGATTT-GGTTTA--A-TCTA-TGTAT-TTCACAAAAATGG-TCGGCG-AA-AGTTGGTATGG-AAACGTCAATGC-ACTGTTG-ATTATA--ATTG-TTTGCAACTTTTCATC-CA-TTTT----GCAATT-T-TTTT--AAATACT-AATTACAC----G-GCG--CTTGAAATT-G--AGTA-TATG-TTT----TTGCGTAATGGAAAT-CCGA-TNAT---AA-T-TATACAC-ATA-ACGT-GATT-T-ACATGAAG-GA--TTGAATGA--GTTATGCAATGCA-GCGACCCAC-TAACG-CGAAA-GA--AATACTTGCCATGGG--CAT-TTTC---GCAAAAGAATTTACAATA-TAGCGAAATCGTTTCA--TTTTAACGCCAATGCAGA-ATTTA--TAACTATTATCT----TTGGTGAATTNCAGCATG-ACCGTAGCTCTCTCGCTTGTAGCGA-ATCTCT--TAAN---TCGGTCATGCCAACGG-ACTGGG-CG-CG-ACATTCTCAATG-C--GGACCAATA-TCGGCAGTAG-A-ACCACCTCGACT---ATTTCAAGAAGCCAATAACAGGCAATTACCCAACTCTGTC-CACAAGC-AA--GCCAATGCCCGGC--ATTGGA-CCACTATTTCGGGAG--AGCCAATGCAGGCTTTGGNCGAATA-CTGAACG-GCCGA-TGCGG-C------GTTAG---GCTAGAAATAT-GATTTCNTCCGATGGCAGGCGTTGGGACGNNACGACGTCATCCAATGCAGCATTTTTATCTTCCTGCAGGCATTGNCTATNNTATAAAGCCTGACTCAATGCAGGNATTGGNCCANTNNTGGCGTCGTCCAA---TGCAGGC---ATTGGGCGA-------CTAC--AACT----GATTCCAATGC-AGGCATTGGGCCA--GTTATGG-GTC-GTCC--TGC-GGC-TTGTCG-----TA--AACT-GATTT--ATG-CGGGCGATTGG--CCAA--TATGGC-GTCGT-C--AATG-C-GGC-ATT-GGTCTACT--AAAATGGATTCAATGCA--GGCATTGGGAC-GA-TTATGGCGTGTCGT-CCAATGCAGGCA-TGGG-CGACTGCAAANCTGAATTCAAATGCAGNCATTGGNCNAGTATGCGTCTTCCCAATGCAGGCAATGGTTGACTAACAAACTGATTCAATGCAGGCATTTGGAGCAGTATGGCGTTNTCGAATGCAGGGCGTTGGGGCGACTGGCGNGAACTGATTNAGATNCAGGCATNGGACCANTGTGCGTCGTCCAAATGCTTGCATTGAGCGANTATACNTACNGANCCAAACTGNNGNCATTGGNACCAGTNTGGGCCCCGGGTGTGTCCAATGCNNGCATTCGAGCGGCTTGACTACAANTGATCTAATGCNNGCATTGAACAGTATGGGTCGTCCAATGCTGCTATTGAAAGCGATACAAACTGTTTATGCANGNNTTNGGNNCANTNTGGCGTCNTCCAATGCAATGCATTCGGGCGNACTNTGACGTNATTCA-ACGC-AGGC-ATTGGANCATTNTGGC---GTCGTTCAA-TGCAGGCATT-GGGCGAACTACAAAGTGATTCAATG--ACAGGC---ATTGGA-CAGTAT--GGGCGTCGTCCAATGCAGGCATT-G-GCGAC-GTACAAA-CTGATTCAAT-GCAGGCATTGGACNAGTATGGC-GTCGTCCAATGCAGGCATTGGG--AG--TAACAA-----TGAT-----------------ATTC--AATGCAGGC---ATTGGCCGCGTATGGCG-CC-TT-A-------CCAATGCAGGCACTGGNTGAACT-ACGAAC-TGATTCAATGCAGGCATTGGAAC-ACAGT--AT-GGCGTCATTTAATGCTAGCATTGGC-T-G--G----CTATGAANTGGTCCAATG-CAGGCATCGGATC-AC----TC---GAA-AGTCG-CCAGTGCA-GGCATTNACA
Reference ( family-6305 ) : ACTCTGAACT--AATATTT--TTTT-GTCTCA-A--T-ATTTT--TT-CATNATAT---CGATC-AAT-TGTATTAA--------AGAGATTTGAAATGGAA-TAT-------TGACTTTTACACTCTCAAAATGATAAA-A----AC--G-GAGTTAAT-TT--ATCAT-AA-A-GTT---GTTGTTTT---AATCA--CA-TATGAGT--TATCCAGATT----GGAAAGGATNT-GGTTTA--A-TCTA-CGTAT-TCCACAAAAATGG-TCGGCG-AA-AGTTGGTATGG-AAACGTCAACGT-ACCGTTG-ATNATA--ATTG-TTTGCAACTTTTCATC-CA-TTTT----GCAATT-T-TTTT--AAATGCT-AATTACA-----G-GCG--CTTGAAATT-G--AATA-TATG-TTT----TTGCGTAATGGAAA--CCGG-TCGT---AA-T-TA-ACAC-ATA-ACGT-GATT-T-ANATGAAG-GA--TTGAATGA--NCTATGCAATGCA-GCGACCCAC-TAATG-CGAAA-GA--AATACTTGCNATGGGGTCATGTTTCTCGGCAAAGGAATTTACAATACTAGNAAAATCNTTTCA--TTTTAANGCCAATGCAGAAATTTATATAACTATTNTCTTTGATTGGTCGNTTNNAGCATGTACCGTANCTCTCTCGCTTGTAGNGAGATCTCTTCTAAN---CCGNNCATGCCAACGGNACTGGGTNGCCGTACATCCTCANTGCCGGGGNCCAATACTCGGCAGTAGCA-ACCACCCCGACTTAAATTTCAAGAGGCCAACNNNAGGCAATTACCCAACTCTGTCCCACAAGCCAATCGCCAANGCCTGGC--ATTGGA-CCANTATNNCAAGAGTCANCCAATGCNGACNTTGGGCGACTA-CTGAACG-GCCGA-TGCGGGC------GTTNG---ACTANAAATAT-GATTTCGTCCAATGGCAGGCATTGGGCCAGTATGGCGTCATCCAATGCAGCATTTCTATCGTCCTGCAGGCATTGGCTA-ACTATAAA--CTGA-TCAATGCAGGCATTGGACCAGTTCTGGCGTCGTCCAA---TGCAGGCA--ATTGGGCGA-------CTAC--AACT----GATTCCAATGC-AGGCATTGGACCA--GTTATGGCGTCGGTCC-ATGCAGGCATTGGCA-----TA--AACT-GATTTCAATG-CAGGCAATTGG--CCAG--TATGGC-GTCGT-C--AATG-C-GGC-ATT-GGNCGACTANAAACTNGATTCAATGCA--GGCATTGGGAC-GAGTTATGGCGTGTCGT-CCAATGCAGGCA-TNGG-CGACTACGAANCTG-ATTCAAATGCAGGCATTGGCCGAGTATGCGTCNTCCCAATGCAGGCATTGGNCGACTAACAAACTGATTCAATGCAGGCATTTGGACCAGTATGGCGTCGTCCAATGCA-GGCATTGGGGCGACT-GT-TAAACTGATTCAAATGCAGGCATTGGACCAGTATGCGTCGTCCAAATGCNTGCATTGGGCGACTATACATACTGATCCAA--TGCCNGCATTGGAACCAGTATGGGCC---GGTG-GTCCAATGCAGGCATT-G-GCG----GACTACAACTGATTCAATGCAGGCATTGGACAGTATGGGTCGTCCAATGCNGCCATTGGAAGCGATACAAACTGNTTATGCAGGCATTGGGACCAGTATGGCGTCGTCCAATGCAGTGCATTCGGGCGAACTATAAC-TGATTCA-ATGC-AGGC-ATTGGACCAGTATGGC---GTCGTCCAA-TGCAGGCATT-GGGCGAACTACAAANTGATTCAATG--ACAGGC---ATTGGA-CAGTAT--GGGCGTCGTCCAATGCAGGCATT-G-GCGAC-GTA-AAA-CTGATTCAAT-GCAGGCATTGGCCNAGTATGGCAGTCGTCCAATGCAGGCATTGGG--AG--TAACAA-----TGAT-----------------ATTC--AATGCAGGC---ATTGGCCGTGTATGGCG-CC-T----------CCAATGCAGGCACTGGTTGAANT-ACGAAC-TGATTCAATGCAGGCATTGGAACNACAGT--AT-GGCGTCATTTAATGCAGGCATTGGC-T-G--G----CTATAAACTGATTCAATG-CAGGCATCGGACC-AC----TC---GAA-AGTCGTCCAGTGCA-GGCATTTACA
gi|1 : ACTCTGAACCTAAATATTT--TTTT-GTCTCA-A--T-ATTTT--TT-CATAATAT---TGATC-CAT-TGTATTAA--------AGATATTTGAAATGGA--TAT-------TGACTTTTACACTCTCAAAA-GATAAA-A----AC--G-GAGTTAAT-TTTGATCAT-CA-A-ATT---GTTGTTTT---AATCA--TA-TATGAGT--TATCCAGATTTAATAAAAAGGATTT-GGTTTC--A-TCTA-TGTAT-TTAACAAAAATGGGTCGGCGCAA-AGTTGGTATGG-AAACTCTAATGC-ACTGTTGGATTATATAATTG-GTTGCAACTTTTTATC-CA-TTTT----GCAATT-TCTTTT--AAAAACT-AATTACAAG---G-GCT--CTTGAAATT-GTTAATA-TATG-TTT----TTGCGAAATGGAAA--CCGAATAAT---AA-T-TATATTC-ATA-GCAT-GATT-T-ACATGAAG-AA--TTGAATGA--GTTATGGAATGCA-GCAACCCAC-TATCGACGAAAAGA--AATACT-GCCATGG---CATTTTT----GCAAAA-AATGGACAATA-TAGCGAAATCGTTTCAATTTTTATTGCCAAT-CAGACATTTA---AACTATTAT------TTGATGAATACCAGCAT--ACCGTAGCTTTCGCGCTTGTAACGA-ATCTTTAGTAAGAATTCAATCA---CAGC----CTGGAATG------ACTTTCAATGAC-------AATAGT-GGCAGTAGAATACCACTCAGAAT---ATTTCAAGAA-CCAATAACAAACA-TTACCCCACTCTGTCACAAAAGC---------ATGCCCGGC--GTTGGAGCCACTATTTCG-----CAGCCAATGGAGGCTTTGGGTGAATA-CTGAACA-ACCAA-TGCAG-C------GTTAGTATACTAGAAATAT-GATTTCATCAGATGGCAGGTGTTGGG--GGT-CGACATCATCCAATGTAGCATTTTTATCTTCCTGCAGGCATTGTCTATACTATAAA--CTGA-TCAATGCAGGCATTGGACCAGTCCTGGTGTCGTCCAA---TGCAGGTAGGATTGAGCGA-------CTAC--AACT----GATTCCAATGC-ATGCATTGGACCA--GTTATGG-GTCGGTCC----CAAGC---GACG-----TA--AACT-GATTTCCATG-CAGGCAATTGGAACCAA--CAAGGC-GTCGT-CGAAATG-C-G-C--TT-GAGCGACTAAAAAATGGATTCAATGCAACGGCATTGGGAC-GAGTTATGGCGTGTCGT-CCAATGCAGGTA-TGGG-CGAGTACAAACCTG-ATTCAAATGCAGCCATTGGCCGAGTATGCGTCTTCCCAATGCAGGCAATGGTTGACTAACAAACTGATTCAATGCAGGCATTTGGAGCAGTATGG-GTTGTCGAATGCAGGGCATTGGGGCGACTGGTGTAAACTGATTGAAATGCAGGCATTGGACCAGTATGCGTCGTCCAAATGCTTGCATTGAGCGACTATACATACTGATTCAA--TGCAGGCATTGGAACCAGTATGGGCCCCGGGTGTGTCCAATGCAGGCATTCA-GCG----GACTACAACT-ATTTAATGCAGGCATTGAACAGTATGGGTCGTCCAATGCTGCTATTGAAAGCGATACAAACTGTTTATGTAGGATTTGGGACCAGTATGGCGTCGTCCA--GCAATGCATTCAAACGAACTATAAC-TGATTCA-ATGCAAGGC--TTGGACCATAATGGC---GTCGTTCAATTGCTTGCATTAGAGCGAACAACAAAA-GATTCAATGAAAAAGGC---ATTGGA-CAGTATGGGGGCGTCGTCCAATGCAGGCATT-G-GCGACAGTA-AAA-CGGATTCCAT-GCAAGCATTGGCCTAGTATGACGGTCGTCCAATGCAGGCATGGGG--AG--TAACAA-----TGAT-----------------ATTCAAAATGCA-GC---ATTGGCCGTGTATGGCG-CC-T----------CTAATGCAGGCA-TAGTTGAAAT-ACAAACATGATTC-ATGCAGACATTAGAACCACAGT--ATGGGCGT-ATTT-ATACTAGCATTGGCTT-G--G----CTATGAAATGATT-AATGCCAGGCAT-GGATC-AC----TTATAGAACAGTTG--AAGGGGAGGGCATTGACA
gi|10 : TTCAGATGC-AGGC-AT--GATCACTTTAGTCAAGCCGCTCAA-TGCAGGCA-T-GGACCACCT-CAAAGTG--CCAATG--GC
gi|10 : GAATATATCTACGAAACTAAACTGGCGCCATTGGCAC---TTTGAG------GTG-GTCC-ATGCCTGCATT-GAGCGGCTTGACTA-AAGTGATC--ATGCCTGCATgccagtttagtttcgtagatatattcctctctttatatcaatcaacagaattgcttttttgctcatcaaaaataaaaccgactaatttcttagtgttcattagagcattatgaattgtaataaaaatgag
gi|11 : ttcagTTGGCCCATTGTTGGCGTCGTCCAATTTTCTAGGCC--ATTGGCCGAATTCCATTTACTAAACTTGAAAATTTCAATACTAGGCATTTGGTCAATGTTATG--------CC--TGC--GC-TTTTCA-----TATTAACTCAATTT---TG-CAGGCATTTGG--CCTGT-TATGGT-GTCAT-C--ctctctttatatcaatcaacagaattgcttttttgctcatcaaaaataaaaccgactaatttcttagtgttcattagagcattatgaattgtaataaaaatgag
gi|12 : ttcaatttgaatggctacA-A--T-ATTTTAGTT-TA----------GATCTAAA-TGTTTTGA---------GTGATTTTAAATGAAA-TAT-------TGGCTTTTAC--TTTCAAAATGATAAA-A----AC--T-GAGTTAAT-TT--ATCAT-AA-G-A-----GTTGTTTT-----TCA--CA-CATGttataccctacatcagttgggct
gi|13 : atcactcaaaacattaagatcttataacttggacaatCTCTGAACT--ATTTTCT--TTTT-GTC-CA-AATT-ATTTT--TT-CATAATATT--CGATC-AAT--GTATTAA---------GAGATTTGAAAAGGAA-TAT-------TGACTTTT--ACTCTCAAAATGATAAA-A----ACTAGTAAGTTAAT-TT---------G-A-GTT---GT--TTTT---AAT----CA-TATGAGT--TAcac
gi|15 : tgcgATGGCGTTTTCGAATGCA-GGCGTTG----AAC--GC-AGAACTGATTCAGATTC-GACATAAGACCACTGTG
gi|16 : tggATGCAGGCGCTGGTCGA-CT-ATGAAC-TGATTCACTGCAGGCATTGG
gi|17 : ccCTTTTAC--TCTCGAAATGATAAA-A----AC--T-GAGTTGAT-TT--ATCAT-AAGA-GTT---Ggcg
gi|2 : ACTCTGAATT--AA-ATTT--TTTT-GTCAAA-T--T-ATTTT--TT-TTTTATATTAACAATC-AAT-GGTATTAAT-------AGA-ATTTGAA-TGGAA-TATCATGTATTGACTTTC-TACTCTCAA--TGATAAATA----AC--G-AAGT--AT-TT--ATCAT-AA-A-GT-------GTTTT---AATCAATCAATGTG-GT--TATC-AGATT----G-AAGGAATTT-GGTTTA--A-TCTA-TGTAT-TC-ACAAAAATGG-TCGG-G-AACAGTTGGTATGG-AAACGTCAATGT-ACTGTTG-ATCATA--ATTG-TTTGCCACTGTTCAT--CA-TTTTGGCCGCAATTAT-TTTT--AAA--CT-AATTACAT----GTGCG--CTTGAAATTCG--TATG-TATGTTTT----TTGCGTAATGGAAAT-CCGA-TCAT---AATT-TA-ACACGATA-TCATCGATT-TAATATG-AG-GA--TTGAATGA--CTTA-GCAATGCACGCGACCAACTTAATA-TGAAA-AATGAATGC-TGCCATGGG--TAT-TTTTTCGGCAAAGAA--TTACAATACTAAGAAAATCG-TTCA--TTTTAACGTCAATGCAGAAATT----TAACTATTTTTT-------GTCAATTACAGCATG-ATCGT-GCT---TCGCTTGTAGAGA-ATCTCTTCT--C---TCGGTCATGCCAACAG-ACTGGGTGG-CG-ACAT-CTCATT-----GGACCAATA--TGGCAGTAGCA-ACCACCTCGACT---ATTTCAAGAAGCCAATATGAGGC-ATTA-CCAACTCTGT--CACAAGCCAATCGC--AGGC----C--ATTGGA-CCAC-ATTTCAAGAG--AG-CAATGCTG--TTTGGTTGAATATCTGAACA-GCCGATTGCAGGT-------TTAG------GAGAATATCAATTTCTTTCAAT-GCAGGCGTTGGGACACAA----GTCATCCAATGC--CA-----------------GCATTGGTTA-TATATAAAGCTTGACTCAATGC-GGAATTGGGCCCATTATGGCGGCGTCC-A---TG-AGGC---ATT-GGCGAT------CTAC--AACT----GATTCATATGCAAGGCATTGGG-CA--G--ATGGCGTC-GTCCAATGC-GGCATTGTCAGCTGTTA--AACT-GATTC--ATGACGGGCGATTGG--CCAAGTTTTGGCGGTCGTAC--AATG-CAGGCAATT-GGTCTACT--TAACT-GATTCAATGCA--GGCATTGGGCCTG---TATGGCAT-CCGTCCCAATGCAGGCATTGGG-CGACTGT-AAACTGAATTC-AATGCAGGCATTGGGCCAGTATGCGc
gi|3 : cTATTTCATTTC-GCATTA-G--T-GCTTG--CTGCATTGCAT---CGATC-A-T-TATATTTA--------AGATATTTGAAATGGAACTAT-------GTACTTTTAC--TCCCAAAATGATAAA-A----ACT-G-AAGTTAATCTT--ATTAT-AA-AAGTT-----TGTTTT---AATCA--CT-TATGAGTATTATC-AAATT----GAAAAGGATTTTGGTTTA--AATCTAATGTAC-TTCACAAAAATGG-TCAGCG-AA-AGTTGGTATGGAAAACATCAATGCGATCGTTG-ATTATA--ATTGTTTTGCAACTTTTCATCGCATTTTT----GCAATT-C-TTTT--ATTTGCTAAATGACACCAGTG-GCGCACTTGAAATT-T--AGTATTATG-TTT----TTGCGTAATGGACATTCCGA-TAGTATGAA-TATATGTAC-ATATACAT-GATT-T-AAATGAAG-GAATTTGAATGACCGCTTTGCAATGCA-GCAG--CAC-TAATG-CGAAT-GA--AATACTTGCGAT-GGGTCATGTTTC---GCAAAAGAATTTACAA-A-TAGCAAAATCTTTTCA---TTTAAAGCCAATGCAG--ATTTATATAACTA-TATCTTTGATTGGTGGCTTTAAGCATGTACTATATCTCTCTC--------CGAGATC------AAA---C----CATGC--ACGATACTGG--CGCTGTAC-TTCTCAATGCC-GGGATCAATACTCGGCAGTAG---ACCA-CTCGACTTAAATTTCAA-AAGCCAACTACAGGCAATTACCCAACTCTGTCCCACAA---AA--GCCAATG-CTGGCTTATTGGcgcgtaataatgc
gi|4 : g-CAGTAT--GG-CGTCGTCCAATGCAGGCATTCG-GCGAC--TACAAA-CTGATTCAAT-GCAGGCATTGGACCAGTATGGC-GTCATCCAATGCAGACATTGGG--CGACTAA-AC-----TGATCGGCCGAGTATGGCGTAATTC--AATGCAGGC---ATTGGCCGAGTATGGAG-TCGT----------CCAATGCAATCACTGGGTGA-CT-ATGAAC-TGATTCAATGCAGGCATCGTC-CGAC--T--AT-GAAGTGATTTAATGTAGGCATTAAT-TTG--GTGAACTATAGAGTCGTCCAATG-CAGGCA-CTGACCGAC----TC---GAA-AGTCGTCCAGTGCA-GGCATTTACA
gi|4 : ggccTCGT-C--AATGTC-AGG-ATTTGGTTTACTTTAAAATGTA---AATGCC--TGCACTGG-AC-GACTT-T--CGAGTCGG-TCAGTGCCTGCA-TTGGACGACTttttaaagtaaaccaaatcctgacattgacgaactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|5 : ggcccagtatggcgtcgtccaatgcaggcattcggcgactacaaactgattcaatgcaggcattggaccagtatggcgtcatccaatgcagacattgggcgactaaactgatcggccgagtatggcgtaattcaatgcaggcattggccgagtatggagtcgtccaatgcaatcactgggtgactatgaactgattcaatgcaggcatcgtccgactatgaagtgatttaatgtaggcattaatttggtgaactatagTGCATGTATTTGGCATATTCTGACGTCCTCCAATGCA-TGTATT-GGGCATATTCTGACGTCATCCA-ACGC-AGGTAATTGGCATATTCTGAC---GTCATGCAA-TGCAGGTATT-TGGCAAATTCTAAAGTCATTCAAT---ACAGACGTTACTAGA-C--TTT--GAA-GTCGTTCAATG--G--ATT-T-GCTTC---A-GAATCTG--TTAAT-GCCCGCATTGGATAACTTTAG-AGTAAAACAATGCATGCACTGAG--AA--AAAGAA-----Tactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|6 : ACTATAAACTGATTTAATG---CAGGC---ATTGGACCAGTAT---GGCGTCATCCAATGCAGACATT-G-GC--C-G-----A-CT-AT---ATAGCAGGCAATGGCCGAATATGGT-GTCATTCAATGCAGGCATTG---------AACAACGCTTTGAT-----------------ACTC----TGCTGA----ATT-GCAATGTAT-----CT-TTCAACAG---CCAATGCATGCACTGGATGAAcgaacgacgcccgttctaggagaacattatantagagtaaaacaatgcatgcactgagaaaaatagtcaaacgacgcccgttctaggagaacattatgtgtacttgttccagcatttagacattaagacaaaaatgtatagtctaagttaaagtctaagttaattgcattcaggtacacaagtaaaatgttttcagcattttctcaaagtacattcaaatattcttaacttgaaaatactcttctaaaaaatacgctgatttgattttttttttttcaatttgctaaaacgtccattgaaattgctgaaaattttcgctagaattatgacagtgcgctagtgctttgcgatcgtaacaatttataacacataccgaaagttcgttattcaatttcaaaaatggat
gi|7 : tgAGTAT--GG-CGTCGTTCAATGCTTGCATA-GAGCGAC--TACAAA-ATGATTCAAT-GAAGGCATTGGACCAGTATGGC-GTCGTCCAATGCAGGCATTGGGCGAG--TA-CAAAT---TGAT-------------------TC--AATGCAGCC---ATTGGCCGTGTATGGCGTCC-T----------CTAATGCAGGCATTAGTTGAA-T-ACAAAC-TGATTCAATGCAGACATTAGA-C--CAGT--AT-GGCGTCATTTACTACTAGCATTGGC-T-G--G----CTATGAACTGATTCAATG-CAGGCATTGGATC-ACTTTGTC---AGG-AG----CCAATGCA-GGCATTtatctcatattggcctactttctcaggagccacatgcaattgcatgcctcaaataaacgtgtaccttaggacaatgcagacagtagtttacttttttcagagtcaatgaaagtattgatagaagcaaagctgagatagaatgacctgacatttgaggtctatgccttcttcagagtcattgcaagcactgaacttcttcctatgtgcagttagttcaagcattgcatgaccttctatctacagccaaagcagacggattta
gi|7 : G--AG--GAA-AA-----T-AT-----------------ATCT--AACG-AAACTAAACTGGCCGCA-ATGGCA-CT-TTGAGAGTAGTCCAATGCCTGCATTGGCT--CCTGACAAAG-TGATCCAATGCCTGCATT-GAAT--CAGTTCAT-AGC--CAGCCAATGCTAGTAGTAAA-T-GACG----CCAT--ACTGGTCTAATG-TCTGCATTGAATC-Aggactactctcaaagtgccattgcggccagtttagtttcgttagatatattttcctcttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|7 : agtatggcgtcgttcaatgcttgcatagagcgactacaaaatgattcaatgaaggcattggaccagtatggcgtcgtccaatgcaggcattgggcgagtacaaattgattcaatgcagccattggccgtgtatggcgtcctctaatgcaggcattagttgaatacaaacCAATGCA-GGC--ATTGGA-TCACTTTGTCAGGAG----CCAATGCAGGCATTGGACTACT--CTCAAAGTGCCAT-TGCGGCCAGTTTAGTTTC---GTTAGATATAT---TTTCCTCttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|8 : agtatggcgtcgttcaatgcttgcatagagcgactacaaaatgattcaatgaaggcattggaccagtatggcgtcgtccaatgcaggcattgggcgagtacaaattgattcaatgcagccattggccgtgtatggcgtcctctaatgcaggcattagttgaatacaaactgattcaatgcagacattagaccagtatggcgtcatttactactagcattggctggctatgaactgattAA-TAT-------TGGCTTT-A-ACTCTCAAAATGATAAA-AGAAAAT--T-TAGTTATT-TT--ATCATGAA-A-GTT---GTT--TTT---AATTA--CA-C--GGGT---A--CATAAT----GTAAA---TAT-GGTTTGCCA-TATA-CACATATTCACTGAAATGA-CCAGCG-AA-AGTTGGCATGG-AAACATCAACGT-ACTGTTG-ATAAT---ATTT-TTAACAGCTTATAA-C-CA-GTTT----GCAATG-T-TTTTGCGAATAAT-AATT----------GCG--TTTGAAATC-G--GG-A-TATA-TTTGCCGTAGCGTAATTAAAT--CCGT-TCAC---AA-T-TA-ACAC-CGA-ATGT-GATTAA-ACATGAGGAAA--TTGAATGA--GTT-TACAATACA-CCGA-CCAC-TAttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|9 : aTCGGAACT--AATTTTT--TTTTTGT-TCATA--TCATTTT--TT-TATAATATA--CAACC-AATGTTTCTCAATACTATTGAGAGATTTGCAATGGAA-TAT-------TGACTTTTAC--TCTCAAAATGATAAA-A----AC--T-GAGTTAAT-TT--ATCAT-AA-A-GTTTTGGTTTTTTTTTAAAT----TA-TATAAGT--TAT-CAGATT-----GAAAGGATAT-GGTTTA--A-TCTA-TGTAT-T-CACAAAAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GCAAGTTGCCTCAGAGTTATTTGCAATCGTTATAACAATAAGACATTTATTATAAATAATGTGTTCAAATAAAGTAGTTTTTGGATAATATTAAAAAATCAGGATTGGGCATAAAATATTTTGTCACACT
Unaligned ( gi|18 ): GGTCTCTTCTAAATCTGTTAACGATATGGTCAAGGTATTTAGGGAC
Alignments
lowQualScore : 11 11 22222222222 1 333333333 1111111 2222 1111 1111 11111111 111 1111 111 1111 11 11 1 1 1 1 1 1 111 1 111 1 2222 111 111111 1 3333333 1 11 222222222 1 2222 1 111 1 1 11 1 111 1 11 11 11 1 1 1 1 1 11 11 22222222 1 222 22222222 44444444 22 1 1 777777777777777777777777777777777777777777777 4444 222 33333 222 11 555555555 1 11 2 1 3333 1 11 2 2 555555 1 2 1 666666 1 11 66666666666666666 22 11 1 1 222222 1 222 5555555 11 2222 2 1 11 666666666666666666666666666666666666 1 222 1 11 22222 1 1 11 555555555 11 22222 11 22222 1 2 2 1 1 1 1 2222222222222 1 1 11 222 222222 1 1 33 2222 1 1 11 2 11 1 1 1 2 33 2 22 11 3333 222 1 11111 111 33333333 11 7777777777777777777777777777777777777777 111 111111 777777777777777 11 333333 11 1 222222222222 1 11 1 3333333333 1
lowQualScore : 33 22 11 8 00000000000 6 1 6 0 3 6 99 888888888 6 5 8888888 2222 5 0000 9999 5 66 5 5 5 11111111 000 2222 5 0 1 99 555 7777 6 0 1 8 11 8 8 11 0 0 2 0 0 0 4 0 0 1 777 0 0 555 0 1111 444 999999 0 3 4444444 0 33 777777777 0 1111 2 0 1 777 0 9 0 11 2 0 777 0 3 0 33 33 33 0 5 0 0 3 3 88 44 99999999 6 7 7 3 0 7 555 3 6 22222222 7 88888888 1 00 7 2 6 3 3 888888888888888888888888888888888888888888888 0000 6 444 00000 6 333 6 6 44 6 777777777 6 3 888 88 0 5 1111 5 66 77 77 0 6 0 6 55 111111 5 0 1 2 5 444444 5 88 00000000000000000 1 11 77 5 5 1 1 1 22 7 444444 3 333 6 6666666 88 8888 6 2 88 7 999999999999999999999999999999999999 3 555 3 0 0 88 77777 3 0 33 111111111 88 22222 88 6 88888 6 6 3 6 0 5 5 1 1 1 5 1 5 3333333333333 1 1 5 1 1 5 1 1 1 1 88 22 1 1 000 1 777777 5 5 22 00 3333 5 1 5 88 22 0 1 22 1 22 1 1 1 88 5 5 1 1 5 1 0 55 44 55 3 0 66 22 0 11 2222 333 0 0 77777 1 3 111 55555555 11 0 0 0 8 0 1 8 1111111111111111111111111111111111111111 111 888888 4 0 111111111111111 1 3 1 66 8 8 0 777777 3 33 0 2 8 3 666666666666 77 1 6 0 33 0 0000000000 3 3 1
lowQualScore : .. .. .. . ........... . . . . . . .. ......... . . ....... .... . .... .... . .. . . . ........ ... .... . . . .. ... .... . . . . .. . . .. . . . . . . . . . . ... . . ... . .... ... ...... . . ....... . .. ......... . .... . . . ... . . . .. . . ... . . . .. .. .. . . . . . . .. .. ........ . . . . . . ... . . ........ . ........ . .. . . . . . ............................................. .... . ... ..... . ... . . .. . ......... . . ... .. . . .... . .. .. .. . . . . .. ...... . . . . . ...... . .. ................. . .. .. . . . . . .. . ...... . ... . ....... .. .... . . .. . .................................... . ... . . . .. ..... . . .. ......... .. ..... .. . ..... . . . . . . . . . . . . . ............. . . . . . . . . . . .. .. . . ... . ...... . . .. .. .... . . . .. .. . . .. . .. . . . .. . . . . . . . .. .. .. . . .. .. . .. .... ... . . ..... . . ... ........ .. . . . . . . . ........................................ ... ...... . . ............... . . . .. . . . ...... . .. . . . . ............ .. . . . .. . .......... . . .
lowQualScore : 88 22 00 0 99999999999 7 7 7 3 3 7 88 222222222 7 7 6666666 6666 0 6666 4444 0 99 0 0 0 88888888 000 3333 7 1 7 22 888 0000 0 8 4 0 00 0 0 88 8 0 5 0 0 0 2 0 0 2 000 0 2 888 0 2222 888 222222 0 2 0000000 0 88 222222222 0 2222 5 0 0 555 0 8 0 22 0 0 555 2 2 0 88 88 00 0 0 0 7 3 3 33 77 00000000 7 3 3 3 7 3 777 7 7 77777777 3 77777777 0 00 3 0 7 7 3 777777777777777777777777777777777777777777777 0000 7 333 00000 7 333 7 7 77 7 333333333 7 3 777 33 0 5 0000 0 55 55 00 0 0 0 0 00 000000 5 0 0 5 0 555555 0 00 55555555555555555 0 55 55 0 5 0 0 0 00 3 777777 3 333 7 7777777 33 3333 7 0 33 3 000000000000000000000000000000000000 3 777 3 7 7 33 33333 3 0 88 000000000 33 77777 33 7 00000 7 7 3 7 5 5 5 0 0 0 0 0 0 5555555555555 0 0 5 0 0 0 0 0 0 0 00 00 0 0 555 0 555555 5 5 00 00 5555 0 0 0 55 00 0 0 00 0 00 0 0 0 55 5 0 0 0 0 0 0 55 00 00 0 0 55 55 7 00 3333 333 0 8 44444 0 2 000 44444444 00 8 8 6 0 6 0 0 3333333333333333333333333333333333333333 888 666666 6 8 222222222222222 0 7 0 33 0 0 8 000000 2 88 0 5 8 2 222222222222 22 0 5 0 88 0 3333333333 7 3 0
consensus : ACTCTGAACT--AATATTT--TTTT-GTC---TCA-A--T-ATTTTTT-CATAATAT-CGATC-AAT-TGTATTAA--------AGAGATTTGAAATGGAA-TAT-------TGACTTTTACACTCTCAAAATGATAAA-A----AC--G-GAGTTAAT-TT--ATCAT-AA-A-GTT---GTTGTTTT---AATCA--CA-TATGAGT--TATCCAGATT----GAAAAGGATTT-GGTTTA--A-TCTA-TGTAT-TTCACAAAAATGG-TCGGCG-AA-AGTTGGTATGG-AAACGTCAATGC-ACTGTTG-ATTATA--ATTG-TTTGCAACTTTTCATC-CA-TTTT----GCAATT-T-TTTT--AAATACT-AATTACAC----G-G-CG--CTTGAAATT-G--AGTA-TATG-TTT----TTGCGTAATGGAAA-TCCGATNAT---AAT-TATACAC-ATA-ACGT-GATT-T-ACATGAAG-GA--TTGAATGA--GTTATGCAATGCA-GCGACCCAC-TAACG-CGAAA-GA--AATACTTGCCATGGG-CA--T-TTTCGCAAAAGAATTTACAATA-TAGCGAAATCGTTTCA--TTTTAACGCCAATGCAGA-ATT-TATAACTATTAT-T----TTGGTGAATTNCAGCATG-ACCGTAGCTCTCTCGCTTGTAGCGA-ATCTCT--TAAN---TCGGTCATGCCAACGG-ACTGGGC-GCGACA--TCTCAATG---GGACCAATA-TCGGCAGTAG-AA--CCACCTCGACT---ATTTCAAGAAGCCAATAACAGGCAATTACCCAACTCTGT-C-ACAA--AAGCCAAT-GCCCGGC--GTTGGAGCCACTATTTCGNGAGAGCCAATGNNGGCTTTGGNTGAATATCTGAACAGCCGATTGCAGNNTTAGTATGCTAGAAATATCGATTTCNTCCGATGGCAGGCGTTGGGACGGTACGACGTCATCCAATGCAGCATTTTTATCTTCCTGCAGGCATTGNCTATANTATAAAGCCTGACTCAATGCAGGNATTGGNCCANTNNTGGCGTCGTCCAA---TGCAGG-CA---TTGGGCGA-------CTAC--AACT----GATTCCAATGC-AGGCATTGGGCCA--GTTATGG-GTCG-TCC--C--GCGGC-TT-TCG-----TA--AACT-GATTT--ATG-CGGGCGATTGG--CC-GA--TATGGC-GTCGT-C--AATG-C-GGC-A-TTGGTCTAC--TAAAA--TGGATTCAATGCA--GGCATTGGGAC-GA-CTATGGCGTGTCGT-CCAATGCAGGCATTGGGCGACTGCAAACCTGAATTCAAATGCAGNCATTGGNCNAGTATGCGTCTTCCCAATGCAGGCAATGGTTGACTAACAAACTGATTCAATGCAGGCATTTGGAGCAGTATGGCGTTNTCGAATGCAGGGCGTTGGGGCGACTGGCGNGAACTGATTNAGATNCAGGCATNGGACCANTGTGCGTCGTCCAAATGCTTGCATTGAGCGANTATACNTACNGANCCAAACTGNNGNCATTGGNACCAGTNTGGGCCCCGGGTGTGTCCAATGCNNGCATTCGAGCGGCTTGACTACAANTGATCTAATGCNNGCATCTGAACAGTATGGGTCGTCCAATGCTGCTATTGAAAGCGATACAAACTGTTTATGCANGNNTTNGGNNCANTNTGGCGTCNTCCAATGCAATGCATTCGGGCGNACTNTGACGTNATCCAACGCAAGGCAATTGGNNCATNNTGGCGTCGTNCAATTGCNNGCATTANGGCGAACTATAAANTGATTCAATG--ACAGGC---ATTGGA-CAGTAT--GGGCGTCGTCCAATGCAGGCATT-G-GCGAC-GTACAAA--CTGATTCAAT-GCAGGCATTGGACNAGTATGGC-GTCGTCCAATGCAGGCATTGG--GAG--TAACAA-----TGAT-----------------ATTC--AATGCAGGC---ATTGGCCGCGTATGGCGCCTT-----G--------CCAATGCAGGCACTGGNTGAACT-ACGAAC-TGATTCAATGCAGGCATTGGAA-CACAGT--AT-GGCGTCATTTAATGCTAGCATTGGC-T-G--G----CTATGAANTGGTCCAATG-CAGGCATCGGATC-AC-TC---GAA-AGTCG-CCGGTGCGGGCATTNACA
Reference ( family-6305 ) : ACTCTGAACT--AATATTT--TTTT-GTC---TCA-A--T-ATTTTTT-CATAATAT-CGATC-AAT-TGTATTAA--------AGAGATTTGAAATGGAA-TAT-------TGACTTTTACACTCTCAAAATGATAAA-A----AC--G-GAGTTAAT-TT--ATCAT-AA-A-GTT---GTTGTTTT---AATCA--CA-TATGAGT--TATCCAGATT----GAAAAGGATTT-GGTTTA--A-TCTA-TGTAT-TTCACAAAAATGG-TCGGCG-AA-AGTTGGTATGG-AAACGTCAATGC-ACTGTTG-ATTATA--ATTG-TTTGCAACTTTTCATC-CA-TTTT----GCAATT-T-TTTT--AAATACT-AATTACAC----G-G-CG--CTTGAAATT-G--AGTA-TATG-TTT----TTGCGTAATGGAAA-TCCGATNAT---AAT-TATACAC-ATA-ACGT-GATT-T-ACATGAAG-GA--TTGAATGA--GTTATGCAATGCA-GCGACCCAC-TAACG-CGAAA-GA--AATACTTGCCATGGG-CA--T-TTTCGCAAAAGAATTTACAATA-TAGCGAAATCGTTTCA--TTTTAACGCCAATGCAGA-ATT-TATAACTATTATCT----TTGGTGAATTNCAGCATG-ACCGTAGCTCTCTCGCTTGTAGCGA-ATCTCT--TAAN---TCGGTCATGCCAACGG-ACTGGGC-GCGACA-TTCTCAATGC--GGACCAATA-TCGGCAGTAG-AA--CCACCTCGACT---ATTTCAAGAAGCCAATAACAGGCAATTACCCAACTCTGT-CCACAAGCAAGCCAAT-GCCCGGC--ATTGGA-CCACTATTTCGGGAGAGCCAATGCAGGCTTTGGNCGAATA-CTGAACGGCCGA-TGCGGCGTTAG---GCTAGAAATAT-GATTTCNTCCGATGGCAGGCGTTGGGACGNNACGACGTCATCCAATGCAGCATTTTTATCTTCCTGCAGGCATTGNCTATNNTATAAAGCCTGACTCAATGCAGGNATTGGNCCANTNNTGGCGTCGTCCAA---TGCAGG-CA---TTGGGCGA-------CTAC--AACT----GATTCCAATGC-AGGCATTGGGCCA--GTTATGG-GTCG-TCC--T--GCGGC-TTGTCG-----TA--AACT-GATTT--ATG-CGGGCGATTGG--CC-AA--TATGGC-GTCGT-C--AATG-C-GGC-A-TTGGTCTAC--TAAAA--TGGATTCAATGCA--GGCATTGGGAC-GA-TTATGGCGTGTCGT-CCAATGCAGGCA-TGGGCGACTGCAAANCTGAATTCAAATGCAGNCATTGGNCNAGTATGCGTCTTCCCAATGCAGGCAATGGTTGACTAACAAACTGATTCAATGCAGGCATTTGGAGCAGTATGGCGTTNTCGAATGCAGGGCGTTGGGGCGACTGGCGNGAACTGATTNAGATNCAGGCATNGGACCANTGTGCGTCGTCCAAATGCTTGCATTGAGCGANTATACNTACNGANCCAAACTGNNGNCATTGGNACCAGTNTGGGCCCCGGGTGTGTCCAATGCNNGCATTCGAGCGGCTTGACTACAANTGATCTAATGCNNGCAT-TGAACAGTATGGGTCGTCCAATGCTGCTATTGAAAGCGATACAAACTGTTTATGCANGNNTTNGGNNCANTNTGGCGTCNTCCAATGCAATGCATTCGGGCGNACTNTGACGTNATTCAACGC-AGGCA-TTGGANCATTNTGGCGTCGTTCAA-TGCAGGCATT-GGGCGAACTACAAAGTGATTCAATG--ACAGGC---ATTGGA-CAGTAT--GGGCGTCGTCCAATGCAGGCATT-G-GCGAC-GTACAAA--CTGATTCAAT-GCAGGCATTGGACNAGTATGGC-GTCGTCCAATGCAGGCATTGG--GAG--TAACAA-----TGAT-----------------ATTC--AATGCAGGC---ATTGGCCGCGTATGGCGCCTT-----A--------CCAATGCAGGCACTGGNTGAACT-ACGAAC-TGATTCAATGCAGGCATTGGAA-CACAGT--AT-GGCGTCATTTAATGCTAGCATTGGC-T-G--G----CTATGAANTGGTCCAATG-CAGGCATCGGATC-AC-TC---GAA-AGTCG-CCAGTGCAGGCATTNACA
gi|1 : ACTCTGAACCTAAATATTT--TTTT-GTC---TCA-A--T-ATTTTTT-CATAATAT-TGATC-CAT-TGTATTAA--------AGATATTTGAAATGGA--TAT-------TGACTTTTACACTCTCAAAA-GATAAA-A----AC--G-GAGTTAAT-TTTGATCAT-CA-A-ATT---GTTGTTTT---AATCA--TA-TATGAGT--TATCCAGATTTAATAAAAAGGATTT-GGTTTC--A-TCTA-TGTAT-TTAACAAAAATGGGTCGGCGCAA-AGTTGGTATGG-AAACTCTAATGC-ACTGTTGGATTATATAATTG-GTTGCAACTTTTTATC-CA-TTTT----GCAATT-TCTTTT--AAAAACT-AATTACAA----G-GGCT--CTTGAAATT-GTTAATA-TATG-TTT----TTGCGAAATGGAAA-CCGAATAAT---AAT-TATATTC-ATA-GCAT-GATT-T-ACATGAAG-AA--TTGAATGA--GTTATGGAATGCA-GCAACCCAC-TATCGACGAAAAGA--AATACT-GCCATGG--CA--T-TTTTGCAAAA-AATGGACAATA-TAGCGAAATCGTTTCAATTTTTATTGCCAAT-CAGACATT-TA-AACTATTAT------TTGATGAATACCAGCAT--ACCGTAGCTTTCGCGCTTGTAACGA-ATCTTTAGTAAGAATTCAATCA---CAGC----CTGGA--ATGAC---TTTCAATG-----AC-AATA-GTGGCAGTAG-AATACCACTCAGAAT---ATTTCAAGAA-CCAATAACAAACA-TTACCCCACTCTGT-C-ACAA--AAGC--AT-GCCCGGC--GTTGGAGCCACTATTTCGC---AGCCAATGGAGGCTTTGGGTGAATA-CTGAACAACCAA-TGCAGCGTTAGTATACTAGAAATAT-GATTTCATCAGATGGCAGGTGTTGGG--GGT-CGACATCATCCAATGTAGCATTTTTATCTTCCTGCAGGCATTGTCTATACTATAAA--CTGA-TCAATGCAGGCATTGGACCAGTCCTGGTGTCGTCCAA---TGCAGG-TAGGATTGAGCGA-------CTAC--AACT----GATTCCAATGC-ATGCATTGGACCA--GTTATGG-GTCGGTCC--CAAGCGAC------G-----TA--AACT-GATTTCCATG-CAGGCAATTGGAACC-AA--CAAGGC-GTCGT-CGAAATG-C-G-C---TTGAGCGAC--TAAAAAATGGATTCAATGCAACGGCATTGGGAC-GAGTTATGGCGTGTCGT-CCAATGCAGGTA-TGGGCGAGTACAAACCTGA-TTCAAATGCAGCCATTGGCCGAGTATGCGTCTTCCCAATGCAGGCAATGGTTGACTAACAAACTGATTCAATGCAGGCATTTGGAGCAGTATGG-GTTGTCGAATGCAGGGCATTGGGGCGACTGGTGTAAACTGATTGAAATGCAGGCATTGGACCAGTATGCGTCGTCCAAATGCTTGCATTGAGCGACTATACATACTGATTCAA--TGCAGGCATTGGAACCAGTATGGGCCCCGGGTGTGTCCAATGCAGGCATTC-AGCG----GACTACAACT-ATTTAATGCAGGCAT-TGAACAGTATGGGTCGTCCAATGCTGCTATTGAAAGCGATACAAACTGTTTATGTAGGATTTGGGACCAGTATGGCGTCGTCCA--GCAATGCATTCAAACGAACTATAAC-TGATTCAATGCAAGGC--TTGGACCATAATGGCGTCGTTCAATTGCTTGCATTAGAGCGAACAACAAAA-GATTCAATGAAAAAGGC---ATTGGA-CAGTATGGGGGCGTCGTCCAATGCAGGCATT-G-GCGACAGTA-AAA--CGGATTCCAT-GCAAGCATTGGCCTAGTATGACGGTCGTCCAATGCAGGCATGGG--GAG--TAACAA-----TGAT-----------------ATTCAAAATGCA-GC---ATTGGCCGTGTATGGCGCCT---------------CTAATGCAGGCA-TAGTTGAAAT-ACAAACATGATTC-ATGCAGACATTAGAACCACAGT--ATGGGCGT-ATTT-ATACTAGCATTGGCTT-G--G----CTATGAAATGAT-TAATGCCAGGCAT-GGATC-AC-TTATAGAACAGTTG-AAGGGGAGGGCATTGACA
gi|10 : GAG-GAATATATCTACGAAACTAAACTGGCGCCATTGGCAC---TTTGAG------GTG-GTCCA-TGCCTGCATT-GAGCGGCTTGACTA-AAGTGATC--ATGCCTGCATCTGAA
gi|11 : TTGGCCCATTGTTGGCGTCGTCCAATTTTCTAGGCCA---TTGGCCGAATTCCATTTACTAAACTTGAAAATTTCAATACTAGGCATTTGGTCAATGTTATG--------CC--T--GC-GC-TTTTCA-----TATTAACTCAATTT---TG-CAGGCATTTGG--CCTGT--TATGGT-GTCAT-C--tctttatatcaatcaacagaattgcttttttgctcatcaaaaataaaaccgactaatttcttagtgttcattagagcattatgaattgtaataaaaatgag
gi|12 : ttcaatttgaatggctacA-A--T-ATTTT------AGTTT-AGATCTAAA-TGTTTTGA---------GTGATTTTAAATGAAA-TAT-------TGGCTTTTAC--TTTCAAAATGATAAA-A----AC--T-GAGTTAAT-TT--ATCAT-AA-G-A-----GTTGTTTT-----TCA--CA-CATGttataccctacatcagttgggct
gi|13 : atcactcaaaacattaagatcttataacttggacaatCTCTGAACT--ATTTTCT--TTTT-GTC----CA-AATT-ATTTTTT-CATAATATTCGATC-AAT--GTATTAA---------GAGATTTGAAAAGGAA-TAT-------TGACTTTT--ACTCTCAAAATGATAAA-A----ACTAGTAAGTTAAT-TT---------G-A-GTT---GT--TTTT---AAT----CA-TATGAGT--TAcac
gi|15 : tgcgATGGCGTTTTCGAATGCA-GGCGTTG----AAC--GC-AGAACTGATTCAGATTC-GACATAAGACCACTGTG
gi|16 : tggATGCAGGCGCTGGTCGA-CT-ATGAAC-TGATTCACTGCAGGCATTGG
gi|17 : ccCTTTTAC--TCTCGAAATGATAAA-A----AC--T-GAGTTGAT-TT--ATCAT-AAGA-GTT---Ggcg
gi|2 : ACTCTGAATT--AA-ATTT--TTTT-GTCAAATTA-T--T-TTTTTTT-TATATTAA-CAATC-AAT-GGTATTAAT-------AGA-ATTTGAA-TGGAA-TATCATGTATTGACTTTC-TACTCTCAA--TGATAAATA----AC--G-AAGT--AT-TT--ATCAT-AA-A-GT-------GTTTT---AATCAATCAATGTG-GT--TATC-AGATT----GAAG-GAATTT-GGTTTA--A-TCTA-TGTAT-T-CACAAAAATGG-TCGG-G-AACAGTTGGTATGG-AAACGTCAATGT-ACTGTTG-ATCATA--ATTG-TTTGCCACTGTTCAT--CA-TTTTGGCCGCAATTAT-TTTT--AA--ACT-AATTACAT----GTG-CG--CTTGAAATTCG--TATG-TATGTTTT----TTGCGTAATGGAAA-TCCGATCAT---AAT-TTAACACGATA-TCATCGATT-TAATATG-AG-GA--TTGAATGA--CTTA-GCAATGCACGCGACCAACTTAATA-TGAAA-AATGAATGC-TGCCATGGG-TATTT-TTTCGGCAAAGAA-TTACAATACTAAGAAAATCG-TTCA--TTTTAACGTCAATGCAGA-AAT-T-TAACTATT---T----TTTGTCAATTACAGCATG-ATCGT-GCT---TCGCTTGTAGAGA-ATCTCT--TCTC---TCGGTCATGCCAACAG-ACTGGGTGGCGACA--TCTCATT----GGACCAATA-T-GGCAGTAGCAA--CCACCTCGACT---ATTTCAAGAAGCCAATATGAGGC-ATTA-CCAACTCTGT-C-----ACAAGCCAATCGCAGGCC--ATTGGA-CCAC-ATTTCAAGAGAG-CAATGCTG--TTTGGTTGAATATCTGAACAGCCGATTGCAGGTTTAG---G--AG-AATATCAATTTCTTTCAAT-GCAGGCGTTGGGAC---ACAA-GTCATCCAATGC--CA-----------------GCATTGGTTAT-ATATAAAGCTTGACTCAATGC-GGAATTGGGCCCATTATGGCGGCGTCC-A---TG-AGG-CA---TT-GGCGAT------CTAC--AACT----GATTCATATGCAAGGCATTGGG-CA--G--ATGGCGTCG-TCCAAT--GCGGCATTGTCAGCTGTTA--AACT-GATTC--ATGACGGGCGATTGG--CC-AAGTTTTGGCGGTCGTAC--AATG-CAGGCAA-TTGGTCTAC--TTAAC--T-GATTCAATGCA--GGCATTGGGCCTG---TATGGCAT-CCGTCCCAATGCAGGCATTGGGCGACTGTAAA-CTGAATTC-AATGCAGGCATTGGGCCAGTATGCGc
gi|3 : cTATTTCATTTC-GCA---TTA-G--T-GCTTGCTGCATTGCAT-CGATC-A-T-TATATTTA--------AGATATTTGAAATGGAACTAT-------GTACTTTTAC--TCCCAAAATGATAAA-A----ACT-G-AAGTTAATCTT--ATTAT-AA-AAGTT-----TGTTTT---AATCA--CT-TATGAGTATTATC-AAATT----GAAAAGGATTTTGGTTTA--AATCTAATGTAC-TTCACAAAAATGG-TCAGCG-AA-AGTTGGTATGGAAAACATCAATGCGATCGTTG-ATTATA--ATTGTTTTGCAACTTTTCATCGCATTTTT----GCAATT-C-TTTT--ATTTGCTAAATGACACCAGTG-G-CGCACTTGAAATT-T--AGTATTATG-TTT----TTGCGTAATGGACATTCCGATAGTATGAATATATGTAC-ATATACAT-GATT-T-AAATGAAG-GAATTTGAATGACCGCTTTGCAATGCA-GCAG--CAC-TAATG-CGAAT-GA--AATACTTGCGATGGGTCA--TGTTTCGCAAAAGAATTTACAA-A-TAGCAAAATCTTTTCA---TTTAAAGCCAATGCAGA-TTTATATAACTA-TATCTTTGATTGGTGGCTTTAAGCATGTACTATATCTCTCTC--------CGAGATC------AAA-------CCATGC--ACGATACT-GGC-GCTGTACTTCTCAATGCCGGGATCAATACTCGGCAGTAG--A--CCA-CTCGACTTAAATTTCAA-AAGCCAACTACAGGCAATTACCCAACTCTGTCCCACAA--AAGCCAAT-G-CTGGCTTATTGGcgcgtaataatgc
gi|4 : g-CAGTAT--GG-CGTCGTCCAATGCAGGCATTCG-GCGAC--TACAAA--CTGATTCAAT-GCAGGCATTGGACCAGTATGGC-GTCATCCAATGCAGACATTGG--GCGACTAA-AC-----TGATCGGCCGAGTATGGCGTAATTC--AATGCAGGC---ATTGGCCGAGTATGGAGTCGT--------------CCAATGCAATCACTGGGTGA-CT-ATGAAC-TGATTCAATGCAGGCATCGTCC-GAC--T--AT-GAAGTGATTTAATGTAGGCATTAAT-TTG--GTGAACTATAGAGTCGTCCAATG-CAGGCA-CTGACCGAC-TC---GAA-AGTCGTCCAGTGCAGGCATTTACA
gi|4 : ggccTCGT-C--AATGTC-AGG-ATTTGGTTTACTTTAAAA--TG---TAAATGCC--TGCACT-GGAC-GA-CTTT--CGAGTCGG-TCAGTGCCTGCATTGGACGACTttttaaagtaaaccaaatcctgacattgacgaactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|5 : ggcccagtatggcgtcgtccaatgcaggcattcggcgactacaaactgattcaatgcaggcattggaccagtatggcgtcatccaatgcagacattgggcgactaaactgatcggccgagtatggcgtaattcaatgcaggcattggccgagtatggagtcgtccaatgcaatcactgggtgactatgaactgattcaatgcaggcatcgtccgactatgaagtgatttaatgtaggcattaatttggtgaactatagTGCATGTATTTGGCATATTCTGACGTCCTCCAATGCA-TGTATT-GGGCATATTCTGACGTCATCCAACGC-AGGTAATTGGCATATTCTGACGTCATGCAA-TGCAGGTATT-TGGCAAATTCTAAAGTCATTCAAT---ACAGACGTTACTAGA-C--TTT--GAA-GTCGTTCAATG--G--ATT-T-GC-----TTCAGAATCTG--TTAAT-GCCCGCATTGGATAACTTTAGA-GTAAAACAATGCATGCACTGA--GAA--AAAGAA-----Tactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|6 : ACTATAAACTGATTTAATG---CAGGC---ATTGGACCAGTAT---GGCGTCATCCAATGCAGACATT-G-GC--C-G-----A--CT-AT---ATAGCAGGCAATGGCCGAATATGGT-GTCATTCAATGCAGGCATTG---------AACAACGCTTTGAT-----------------ACTC----TGCTGA----ATT-GCAATGTAT----CTTTCAACAG--------CCAATGCATGCACTGGATGAAcgaacgacgcccgttctaggagaacattatantagagtaaaacaatgcatgcactgagaaaaatagtcaaacgacgcccgttctaggagaacattatgtgtacttgttccagcatttagacattaagacaaaaatgtatagtctaagttaaagtctaagttaattgcattcaggtacacaagtaaaatgttttcagcattttctcaaagtacattcaaatattcttaacttgaaaatactcttctaaaaaatacgctgatttgattttttttttttcaatttgctaaaacgtccattgaaattgctgaaaattttcgctagaattatgacagtgcgctagtgctttgcgatcgtaacaatttataacacataccgaaagttcgttattcaatttcaaaaatggat
gi|7 : tgAGTAT--GG-CGTCGTTCAATGCTTGCATA-GAGCGAC--TACAAA--ATGATTCAAT-GAAGGCATTGGACCAGTATGGC-GTCGTCCAATGCAGGCATTGGGCGAG--T-ACAAAT---TG-------------------ATTC--AATGCAGCC---ATTGGCCGTGTATGGCGTCCT--------------CTAATGCAGGCATTAGTTGAA-T-ACAAAC-TGATTCAATGCAGACATTAG-A-C-CAGT--AT-GGCGTCATTTACTACTAGCATTGGC-T-G--G----CTATGAACTGATTCAATG-CAGGCATTGGATC-ACTTT---GTC-AGGAG-CCAATGCAGGCATTtatctcatattggcctactttctcaggagccacatgcaattgcatgcctcaaataaacgtgtaccttaggacaatgcagacagtagtttacttttttcagagtcaatgaaagtattgatagaagcaaagctgagatagaatgacctgacatttgaggtctatgccttcttcagagtcattgcaagcactgaacttcttcctatgtgcagttagttcaagcattgcatgaccttctatctacagccaaagcagacggattta
gi|7 : --GAG--GAA-AA-----T-AT-----------------ATCT--AACG-AAACTAAACTGGCCGCA-ATGGCACTTT-----GAGAGTAGTCCAATGCCTGCATTGGCTC--CTGACAAAG-TGATCCAATGCCTGCATTG-AA-T-CAGTTCAT-AGC--CAGCCAATGCTAGTAGTAAA-T-GACG----CCAT--ACTGGTCTAATG-TCTGCATTGAATC-Aggactactctcaaagtgccattgcggccagtttagtttcgttagatatattttcctcttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|8 : agtatggcgtcgttcaatgcttgcatagagcgactacaaaatgattcaatgaaggcattggaccagtatggcgtcgtccaatgcaggcattgggcgagtacaaattgattcaatgcagccattggccgtgtatggcgtcctctaatgcaggcattagttgaatacaaacAA-TAT-------TGGCTTT-A-ACTCTCAAAATGATAAA-AGAAAAT--T-TAGTTATT-TT--ATCATGAA-A-GTT---GTT--TTT---AATTA--CA-C--GGGT---A--CATAAT----GTAAA---TAT-GGTTTGCCA-TATA-CACATATTCACTGAAATGA-CCAGCG-AA-AGTTGGCATGG-AAACATCAACGT-ACTGTTG-ATAAT---ATTT-TTAACAGCTTATAA-C-CA-GTTT----GCAATG-T-TTTTGCGAATAAT-AATT----------G-CG--TTTGAAATC-G--GG-A-TATA-TTTGCCGTAGCGTAAT-TAAA-TCCGTTCAC---AAT-TA-ACAC-CGA-ATGT-GATTAA-ACATGAGGAAA--TTGAATGA--GTT-TACAATACA-CCGA-CCAC-TAttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|9 : aTCGGAACT--AATTTTT--TTTTTGT----TCATA--TCATTTTTT-TATAATATACAACC-AATGTTTCTCAATACTATTGAGAGATTTGCAATGGAA-TAT-------TGACTTTTAC--TCTCAAAATGATAAA-A----AC--T-GAGTTAAT-TT--ATCAT-AA-A-GTTTTGGTTTTTTTTTAAAT----TA-TATAAGT--TAT-CAGATT----G-AAAGGATAT-GGTTTA--A-TCTA-TGTA--TTCACAAAAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GCAAGTTGCCTCAGAGTTATTTGCAATCGTTATAACAATAAGACATTTATTATAAATAATGTGTTCAAATAAAGTAGTTTTTGGATAATATTAAAAAATCAGGATTGGGCATAAAATATTTTGTCACACT
Unaligned ( gi|18 ): GGTCTCTTCTAAATCTGTTAACGATATGGTCAAGGTATTTAGGGAC
Alignments
lowQualScore : 11 11 22222222222 1 333333333 1111111 2222 1111 1111 11111111 111 1111 111 1111 11 11 1 1 1 1 1 1 111 1 111 1 2222 111 111111 1 3333333 1 11 222222222 1 2222 1 111 1 1 11 1 111 1 11 11 11 1 1 1 1 1 11 11 22222222 1 222 22222222 33333333333 22 1 1 666666666666666666666666666666666666666666 1 22222222 222 33333 222 11 11 1 111 1 1 2222 1 11 1 1 4444444444 1 1 555555 1 11 66666666666666666 2 11 1 1 222222 1 222 5555555 11 2222 2 1 11 777777777777777777777777777777777777 1 222 1 11 33333 1 1 11 33333333 1 11 11 11 22222 1 1 1 1 1 1 2222222222222 1 1 11 222 222222 1 1 33 2222 1 1 11 1 11 1 1 1 1 11 1 11 3333 222 1 11111 111 33333333 11 7777777777777777777777777777777777777777 111 111111 666666666666666 111 444444 11 1 222222222222 1 11 1 3333333333 1
lowQualScore : 33 22 11 8 00000000000 6 1 6 0 3 6 99 888888888 6 5 8888888 2222 5 0000 9999 5 66 5 5 5 11111111 000 2222 5 0 1 99 555 7777 6 0 1 8 11 8 8 11 0 0 2 0 0 0 4 0 0 1 777 0 0 555 0 1111 444 999999 0 3 4444444 0 33 777777777 0 1111 2 0 1 777 0 9 0 11 2 0 777 0 3 0 33 33 33 0 5 0 0 3 3 88 44 99999999 6 7 7 3 0 7 555 3 6 22222222 00000000000 1 00 7 2 6 3 3 999999999999999999999999999999999999999999 6 7 66666666 444 00000 6 333 6 6 44 6 88 7 6 3 888 999 5 5 1111 5 22 77 1 5 5 22 1111111111 5 1 2 5 444444 5 88 00000000000000000 1 0 77 5 5 1 1 1 22 7 444444 3 333 6 6666666 88 8888 6 2 88 7 777777777777777777777777777777777777 3 555 3 0 0 88 22222 3 0 33 77777777 3 88 88 6 7 88 6 77777 6 6 3 7 5 5 5 1 1 1 5 1 5 3333333333333 1 1 5 1 1 5 1 1 1 1 88 22 1 1 000 1 777777 5 5 22 00 3333 5 1 5 88 22 5 1 22 1 22 1 1 1 88 5 5 1 1 5 1 5 88 22 22 1 5 22 66 88 2222 333 0 0 77777 1 3 111 55555555 11 0 0 0 8 0 1 8 1111111111111111111111111111111111111111 111 888888 4 0 444444444444444 1 3 1 555 8 8 0 333333 33 0 2 8 3 666666666666 77 1 6 0 33 0 0000000000 3 3 0 0 1
lowQualScore : .. .. .. . ........... . . . . . . .. ......... . . ....... .... . .... .... . .. . . . ........ ... .... . . . .. ... .... . . . . .. . . .. . . . . . . . . . . ... . . ... . .... ... ...... . . ....... . .. ......... . .... . . . ... . . . .. . . ... . . . .. .. .. . . . . . . .. .. ........ . . . . . . ... . . ........ ........... . .. . . . . . .......................................... . . ........ ... ..... . ... . . .. . .. . . . ... ... . . .... . .. .. . . . .. .......... . . . . ...... . .. ................. . . .. . . . . . .. . ...... . ... . ....... .. .... . . .. . .................................... . ... . . . .. ..... . . .. ........ . .. .. . . .. . ..... . . . . . . . . . . . . . ............. . . . . . . . . . . .. .. . . ... . ...... . . .. .. .... . . . .. .. . . .. . .. . . . .. . . . . . . . .. .. .. . . .. .. .. .... ... . . ..... . . ... ........ .. . . . . . . . ........................................ ... ...... . . ............... . . . ... . . . ...... .. . . . . ............ .. . . . .. . .......... . . . . .
lowQualScore : 88 22 00 0 99999999999 7 7 7 3 3 7 88 222222222 7 7 6666666 6666 0 6666 4444 0 99 0 0 0 88888888 000 3333 7 1 7 22 888 0000 0 8 4 0 00 0 0 88 8 0 5 0 0 0 2 0 0 2 000 0 2 888 0 2222 888 222222 0 2 0000000 0 88 222222222 0 2222 5 0 0 555 0 8 0 22 0 0 555 2 2 0 88 88 00 0 0 0 7 3 3 33 77 00000000 7 3 3 3 7 3 777 7 7 77777777 00000000000 0 00 3 0 7 7 3 777777777777777777777777777777777777777777 0 3 33333333 333 00000 7 333 7 7 77 7 33 3 7 3 777 000 0 5 5555 0 00 55 0 5 5 00 5555555555 0 0 5 0 000000 0 00 55555555555555555 0 5 55 0 5 0 0 0 00 3 777777 3 333 7 7777777 33 3333 7 0 33 3 333333333333333333333333333333333333 3 777 3 7 7 33 00000 3 0 88 77777777 3 33 33 7 3 33 7 77777 7 7 3 3 0 5 5 0 0 0 0 0 0 5555555555555 0 0 5 0 0 0 0 0 0 0 00 00 0 0 555 0 555555 5 5 00 00 5555 0 0 0 55 00 0 0 00 0 00 0 0 0 55 5 0 0 0 0 0 5 55 00 00 0 5 00 55 33 3333 333 0 8 44444 0 2 000 44444444 00 8 8 6 0 6 0 0 3333333333333333333333333333333333333333 888 666666 6 8 888888888888888 0 7 0 555 0 0 8 000000 88 0 5 8 2 222222222222 22 0 5 0 88 0 3333333333 7 3 7 7 0
consensus : ACTCTGAACT--AATATTT--TTTT-GTC---TCA-A--T-ATTTTTT-CATAATAT-CGATC-AAT-TGTATTAA--------AGAGATTTGAAATGGAA-TAT-------TGACTTTTACACTCTCAAAATGATAAA-A----AC--G-GAGTTAAT-TT--ATCAT-AA-A-GTT---GTTGTTTT---AATCA--CA-TATGAGT--TATCCAGATT----GAAAAGGATTT-GGTTTA--A-TCTA-TGTAT-TTCACAAAAATGG-TCGGCG-AA-AGTTGGTATGG-AAACGTCAATGC-ACTGTTG-ATTATA--ATTG-TTTGCAACTTTTCATC-CA-TTTT----GCAATT-T-TTTT--AAATACT-AATTACAC----G-G-CG--CTTGAAATT-G--AGTA-TATG-TTT----TTGCGTAATGGAAA-TCCGATNAT---AAT-TATACAC-ATA-ACGT-GATT-T-ACATGAAG-GA--TTGAATGA--GTTATGCAATGCA-GCGACCCAC-TAACG-CGAAA-GA--AATACTTGCCATGGG-CA--T-TTTCGCAAAAGAATTTACAATA-TAGCGAAATCGTTTCA--TTTTAACGCCAATGCAGA-ATT-TATAACTAT-T-TT---TTGGTGAATTNCAGCATG-ACCGTAGCTCTCTCGCTTGTAGCGA-ATCTCT--TAAN---TCGGTCATGCCAACGG-ACTGGGC-GC-G-AC-TCTCAAT---GGGACCAATA-TCGGCAGTAG-AA--CCACCTCGACT---ATTTCAAGAAGCCAATAACAGGCAATTACCCAACTCTGT--CACAAAAGCCAAT-GCCCGGC--GTTGGAGCCACTATTTCGNGAGAGCCAATGNNGGCTTTGGNTGAATATCTGAACAGCCGATTGCAGNNTTAGTATACTAGAGAATATCGATTTCNTCCGATGGCAGGCGTTGGGACGGTACGACGTCATCCAATGCAGCATTTTTATCTTCCTGCAGGCATTGNCTATACTATAAAGCCTGACTCAATGCAGGNATTGGNCCANTNNTGGCGTCGTCCAA---TGCAGG-CA---TTGGGCGA-------CTAC--AACT----GATTCCAATGC-AGGCATTGGGCCA--GTTATGG-GTCG-TCC--C--GCGNC-TT-TCG-----TA--AACT-GATTT--ATG-CGGGCGATTGG--CC-GA--TATGGC-GTCGT-C--AATG-C-GGC-ATT-GGTCTACT--AAAA--TGGATTCAATGCA--GGCATTGGGAC-GA-CTATGGCGTGTCGT-CCAATGCAGGCATTGGGCGACTGCAAACCTGAATTCAAATGCAGNCATTGGNCNAGTATGCGTCTTCCCAATGCAGGCAATGGTTGACTAACAAACTGATTCAATGCAGGCATTTGGAGCAGTATGGCGTTNTCGAATGCAGGGCGTTGGGGCGACTGGCGNGAACTGATTNAGATNCAGGCATNGGACCANTGTGCGTCGTCCAAATGCTTGCATTGAGCGANTATACNTACNGANCCAAACTGNNGNCATTGGNACCAGTNTGGGCCCCGGGTGTGTCCAATGCNNGCATTCGAGCGGCTTGACTACAANTGATCTAATGCNNGCATCTGAACAGTATGGGTCGTCCAATGCTGCTATTGAAAGCGATACAAACTGTTTATGCANGNNTTNGGNNCANTNTGGCGTCNTCCAATGCAATGCATTCGGGCGNACTNTGACGTNATCCAACGCAAGGCAATTGGNNCATNNTGGCGTCGTNCAATTGCNNGCATTANGGCGAACTATAAANTGATTCAATG--ACAGGC---ATTGGA-CAGTAT--GGGCGTCGTCCAATGCAGGCATT-G-GCGAC-GTACAAA--CTGATTCAAT-GCAGGCATTGGACNAGTATGGC-GTCGTCCAATGCAGGCATTGG--GAG--TAACAA-----TGAT-----------------ATTC--AATGCAGGC---ATTGGCCGCGTATGGCGCCTT-----G--------CCAATGCAGGCACTGGNTGAACT-ACGAAC-TGATTCAATGCAGGCATTGGAA-C-CAGT--AT-GGCGTCATTTAATGCTAGCATTGG-C-TG--G----CTATGAANTGGTCCAATG-CAGGCATCGGATC-AC-TC---GAA-AGTCG-CCGGTGCGGGCATTNACA
Reference ( family-6305 ) : ACTCTGAACT--AATATTT--TTTT-GTC---TCA-A--T-ATTTTTT-CATAATAT-CGATC-AAT-TGTATTAA--------AGAGATTTGAAATGGAA-TAT-------TGACTTTTACACTCTCAAAATGATAAA-A----AC--G-GAGTTAAT-TT--ATCAT-AA-A-GTT---GTTGTTTT---AATCA--CA-TATGAGT--TATCCAGATT----GAAAAGGATTT-GGTTTA--A-TCTA-TGTAT-TTCACAAAAATGG-TCGGCG-AA-AGTTGGTATGG-AAACGTCAATGC-ACTGTTG-ATTATA--ATTG-TTTGCAACTTTTCATC-CA-TTTT----GCAATT-T-TTTT--AAATACT-AATTACAC----G-G-CG--CTTGAAATT-G--AGTA-TATG-TTT----TTGCGTAATGGAAA-TCCGATNAT---AAT-TATACAC-ATA-ACGT-GATT-T-ACATGAAG-GA--TTGAATGA--GTTATGCAATGCA-GCGACCCAC-TAACG-CGAAA-GA--AATACTTGCCATGGG-CA--T-TTTCGCAAAAGAATTTACAATA-TAGCGAAATCGTTTCA--TTTTAACGCCAATGCAGA-ATT-TATAACTAT-TATT---TTGGTGAATTNCAGCATG-ACCGTAGCTCTCTCGCTTGTAGCGA-ATCTCT--TAAN---TCGGTCATGCCAACGG-ACTGGGC-GC-G-ACATCTCAAT---GGGACCAATA-TCGGCAGTAG-AA--CCACCTCGACT---ATTTCAAGAAGCCAATAACAGGCAATTACCCAACTCTGT--CACAAAAGCCAAT-GCCCGGC--GTTGGAGCCACTATTTCGNGAGAGCCAATGNNGGCTTTGGNTGAATATCTGAACAGCCGATTGCAGNNTTAGTATGCTAGA-AATATCGATTTCNTCCGATGGCAGGCGTTGGGACGGTACGACGTCATCCAATGCAGCATTTTTATCTTCCTGCAGGCATTGNCTATANTATAAAGCCTGACTCAATGCAGGNATTGGNCCANTNNTGGCGTCGTCCAA---TGCAGG-CA---TTGGGCGA-------CTAC--AACT----GATTCCAATGC-AGGCATTGGGCCA--GTTATGG-GTCG-TCC--C--GCGGC-TT-TCG-----TA--AACT-GATTT--ATG-CGGGCGATTGG--CC-GA--TATGGC-GTCGT-C--AATG-C-GGC-ATT-GGTCTACT--AAAA--TGGATTCAATGCA--GGCATTGGGAC-GA-CTATGGCGTGTCGT-CCAATGCAGGCATTGGGCGACTGCAAACCTGAATTCAAATGCAGNCATTGGNCNAGTATGCGTCTTCCCAATGCAGGCAATGGTTGACTAACAAACTGATTCAATGCAGGCATTTGGAGCAGTATGGCGTTNTCGAATGCAGGGCGTTGGGGCGACTGGCGNGAACTGATTNAGATNCAGGCATNGGACCANTGTGCGTCGTCCAAATGCTTGCATTGAGCGANTATACNTACNGANCCAAACTGNNGNCATTGGNACCAGTNTGGGCCCCGGGTGTGTCCAATGCNNGCATTCGAGCGGCTTGACTACAANTGATCTAATGCNNGCATCTGAACAGTATGGGTCGTCCAATGCTGCTATTGAAAGCGATACAAACTGTTTATGCANGNNTTNGGNNCANTNTGGCGTCNTCCAATGCAATGCATTCGGGCGNACTNTGACGTNATCCAACGCAAGGCAATTGGNNCATNNTGGCGTCGTNCAATTGCNNGCATTANGGCGAACTATAAANTGATTCAATG--ACAGGC---ATTGGA-CAGTAT--GGGCGTCGTCCAATGCAGGCATT-G-GCGAC-GTACAAA--CTGATTCAAT-GCAGGCATTGGACNAGTATGGC-GTCGTCCAATGCAGGCATTGG--GAG--TAACAA-----TGAT-----------------ATTC--AATGCAGGC---ATTGGCCGCGTATGGCGCCTT-----G--------CCAATGCAGGCACTGGNTGAACT-ACGAAC-TGATTCAATGCAGGCATTGGAA-CACAGT--AT-GGCGTCATTTAATGCTAGCATTGG-C-TG--G----CTATGAANTGGTCCAATG-CAGGCATCGGATC-AC-TC---GAA-AGTCG-CCGGTGCGGGCATTNACA
gi|1 : ACTCTGAACCTAAATATTT--TTTT-GTC---TCA-A--T-ATTTTTT-CATAATAT-TGATC-CAT-TGTATTAA--------AGATATTTGAAATGGA--TAT-------TGACTTTTACACTCTCAAAA-GATAAA-A----AC--G-GAGTTAAT-TTTGATCAT-CA-A-ATT---GTTGTTTT---AATCA--TA-TATGAGT--TATCCAGATTTAATAAAAAGGATTT-GGTTTC--A-TCTA-TGTAT-TTAACAAAAATGGGTCGGCGCAA-AGTTGGTATGG-AAACTCTAATGC-ACTGTTGGATTATATAATTG-GTTGCAACTTTTTATC-CA-TTTT----GCAATT-TCTTTT--AAAAACT-AATTACAA----G-GGCT--CTTGAAATT-GTTAATA-TATG-TTT----TTGCGAAATGGAAA-CCGAATAAT---AAT-TATATTC-ATA-GCAT-GATT-T-ACATGAAG-AA--TTGAATGA--GTTATGGAATGCA-GCAACCCAC-TATCGACGAAAAGA--AATACT-GCCATGG--CA--T-TTTTGCAAAA-AATGGACAATA-TAGCGAAATCGTTTCAATTTTTATTGCCAAT-CAGACATT-TA-AACTAT-TATT---T-GATGAATACCAGCAT--ACCGTAGCTTTCGCGCTTGTAACGA-ATCTTTAGTAAGAATTCAATCA---CAGC----CTGGA--AT-G-AC-TTTCAAT---GA---CAATA-GTGGCAGTAG-AATACCACTCAGAAT---ATTTCAAGAA-CCAATAACAAACA-TTACCCCACTCTGT--CACAAAAGC--AT-GCCCGGC--GTTGGAGCCACTATTTCGC---AGCCAATGGAGGCTTTGGGTGAATA-CTGAACAACCAAT-GCAGCGTTAGTATACTAGA-AATAT-GATTTCATCAGATGGCAGGTGTTGGG--GGT-CGACATCATCCAATGTAGCATTTTTATCTTCCTGCAGGCATTGTCTATACTATAAA--CTGA-TCAATGCAGGCATTGGACCAGTCCTGGTGTCGTCCAA---TGCAGG-TAGGATTGAGCGA-------CTAC--AACT----GATTCCAATGC-ATGCATTGGACCA--GTTATGG-GTCGGTCC--CAAGCGAC------G-----TA--AACT-GATTTCCATG-CAGGCAATTGGAACC-AA--CAAGGC-GTCGT-CGAAATG-C-G-C--TT-GAGCGACT--AAAAAATGGATTCAATGCAACGGCATTGGGAC-GAGTTATGGCGTGTCGT-CCAATGCAGGTAT-GGGCGAGTACAAACCTGA-TTCAAATGCAGCCATTGGCCGAGTATGCGTCTTCCCAATGCAGGCAATGGTTGACTAACAAACTGATTCAATGCAGGCATTTGGAGCAGTATGG-GTTGTCGAATGCAGGGCATTGGGGCGACTGGTGTAAACTGATTGAAATGCAGGCATTGGACCAGTATGCGTCGTCCAAATGCTTGCATTGAGCGACTATACATACTGATTCAA--TGCAGGCATTGGAACCAGTATGGGCCCCGGGTGTGTCCAATGCAGGCATTC-AGCG----GACTACAACT-ATTTAATGCAGGCAT-TGAACAGTATGGGTCGTCCAATGCTGCTATTGAAAGCGATACAAACTGTTTATGTAGGATTTGGGACCAGTATGGCGTCGTCCA--GCAATGCATTCAAACGAACTATAAC-TGATTCAATGCAAGGC--TTGGACCATAATGGCGTCGTTCAATTGCTTGCATTAGAGCGAACAACAAAA-GATTCAATGAAAAAGGC---ATTGGA-CAGTATGGGGGCGTCGTCCAATGCAGGCATT-G-GCGACAGTA-AAA--CGGATTCCAT-GCAAGCATTGGCCTAGTATGACGGTCGTCCAATGCAGGCATGGG--GAG--TAACAA-----TGAT-----------------ATTCAAAATGCA-GC---ATTGGCCGTGTATGGCGCCT---------------CTAATGCAGGCA-TAGTTGAAAT-ACAAACATGATTC-ATGCAGACATTAGAACCACAGT--ATGGGCGT-ATTT-ATACTAGCATTGG-CTTG--G----CTATGAAATGAT-TAATGCCAGGCAT-GGATC-AC-TTATAGAACAGTTG-AAGGGGAGGGCATTGACA
gi|10 : GAG-GAATATATCTACGAAACTAAACTGGCGCCATTGGCAC---TTTG------AGGTG-GTCC-ATGCCTGCATT-GAGCGGCTTGACTA-AAGTGATC--ATGCCTGCATCTGAA
gi|11 : TTGGCCCATTGTTGGCGTCGTCCAATTTTCTAGGCCA---TTGGCCGAATTCCATTTACTAAACTTGAAAATTTCAATACTAGGCATTTGGTCAATGTTATG--------CC--T--GCGCT-TT-TCA-----TATTAACTCAATTT---TG-CAGGCATTTGG--CCTGT--TATGGT-GTCAT-C--tctttatatcaatcaacagaattgcttttttgctcatcaaaaataaaaccgactaatttcttagtgttcattagagcattatgaattgtaataaaaatgag
gi|12 : ttcaatttgaatggctacA-A--T-ATTTT------AGTTT-AGATCTAAA-TGTTTTGA---------GTGATTTTAAATGAAA-TAT-------TGGCTTTTAC--TTTCAAAATGATAAA-A----AC--T-GAGTTAAT-TT--ATCAT-AA-G-A-----GTTGTTTT-----TCA--CA-CATGttataccctacatcagttgggct
gi|13 : atcactcaaaacattaagatcttataacttggacaatCTCTGAACT--ATTTTCT--TTTT-GTC----CA-AATT-ATTTTTT-CATAATATTCGATC-AAT--GTATTAA---------GAGATTTGAAAAGGAA-TAT-------TGACTTTT--ACTCTCAAAATGATAAA-A----ACTAGTAAGTTAAT-TT---------G-A-GTT---GT--TTTT---AAT----CA-TATGAGT--TAcac
gi|15 : tgcgATGGCGTTTTCGAATGCA-GGCGTTG----AAC--GC-AGAACTGATTCAGATTC-GACATAAGACCACTGTG
gi|16 : tggATGCAGGCGCTGGTCGA-CT-ATGAAC-TGATTCACTGCAGGCATTGG
gi|17 : ccCTTTTAC--TCTCGAAATGATAAA-A----AC--T-GAGTTGAT-TT--ATCAT-AAGA-GTT---Ggcg
gi|2 : ACTCTGAATT--AA-ATTT--TTTT-GTCAAATTA-T--T-TTTTTTT-TATATTAA-CAATC-AAT-GGTATTAAT-------AGA-ATTTGAA-TGGAA-TATCATGTATTGACTTTC-TACTCTCAA--TGATAAATA----AC--G-AAGT--AT-TT--ATCAT-AA-A-GT-------GTTTT---AATCAATCAATGTG-GT--TATC-AGATT----GAAG-GAATTT-GGTTTA--A-TCTA-TGTAT-T-CACAAAAATGG-TCGG-G-AACAGTTGGTATGG-AAACGTCAATGT-ACTGTTG-ATCATA--ATTG-TTTGCCACTGTTCAT--CA-TTTTGGCCGCAATTAT-TTTT--AA--ACT-AATTACAT----GTG-CG--CTTGAAATTCG--TATG-TATGTTTT----TTGCGTAATGGAAA-TCCGATCAT---AAT-TTAACACGATA-TCATCGATT-TAATATG-AG-GA--TTGAATGA--CTTA-GCAATGCACGCGACCAACTTAATA-TGAAA-AATGAATGC-TGCCATGGG-TATTT-TTTCGGCAAAGAA-TTACAATACTAAGAAAATCG-TTCA--TTTTAACGTCAATGCAGA-AAT-T-TAACTAT-T-TT---TT-GTCAATTACAGCATG-ATCGT-GCT---TCGCTTGTAGAGA-ATCTCT--TCTC---TCGGTCATGCCAACAG-ACTGGGTGGC-G-ACATCTC-AT---TGGACCAATA-T-GGCAGTAGCAA--CCACCTCGACT---ATTTCAAGAAGCCAATATGAGGC-ATTA-CCAACTCTGT--CAC--AAGCCAATCGCAGGCC--ATTGGA-CCAC-ATTTCAAGAGAG-CAATGCTG--TTTGGTTGAATATCTGAACAGCCGATTGCAGGTTTAG-------GAGAATATCAATTTCTTTCAAT-GCAGGCGTTGGGAC---ACAA-GTCATCCAATGC--CA-----------------GCATTGGTTATA-TATAAAGCTTGACTCAATGC-GGAATTGGGCCCATTATGGCGGCGTCC-A---TG-AGG-CA---TT-GGCGAT------CTAC--AACT----GATTCATATGCAAGGCATTGGG-CA--G--ATGGCGTCG-TCCAAT--GCGGCATTGTCAGCTGTTA--AACT-GATTC--ATGACGGGCGATTGG--CC-AAGTTTTGGCGGTCGTAC--AATG-CAGGCAATT-GGTCTACT--TAAC--T-GATTCAATGCA--GGCATTGGGCCTG---TATGGCAT-CCGTCCCAATGCAGGCATTGGGCGACTGTAAA-CTGAATTC-AATGCAGGCATTGGGCCAGTATGCGc
gi|3 : cTATTTCATTTC-GCA---TTA-G--T-GCTTGCTGCATTGCAT-CGATC-A-T-TATATTTA--------AGATATTTGAAATGGAACTAT-------GTACTTTTAC--TCCCAAAATGATAAA-A----ACT-G-AAGTTAATCTT--ATTAT-AA-AAGTT-----TGTTTT---AATCA--CT-TATGAGTATTATC-AAATT----GAAAAGGATTTTGGTTTA--AATCTAATGTAC-TTCACAAAAATGG-TCAGCG-AA-AGTTGGTATGGAAAACATCAATGCGATCGTTG-ATTATA--ATTGTTTTGCAACTTTTCATCGCATTTTT----GCAATT-C-TTTT--ATTTGCTAAATGACACCAGTG-G-CGCACTTGAAATT-T--AGTATTATG-TTT----TTGCGTAATGGACATTCCGATAGTATGAATATATGTAC-ATATACAT-GATT-T-AAATGAAG-GAATTTGAATGACCGCTTTGCAATGCA-GCAG--CAC-TAATG-CGAAT-GA--AATACTTGCGATGGGTCA--TGTTTCGCAAAAGAATTTACAA-A-TAGCAAAATCTTTTCA---TTTAAAGCCAATGCAGA-TTTATATAACTATATCTTTGATTGGTGGCTTTAAGCATGTACTATATCTCTCTC--------CGAGATC------AAA-------CCATGC--ACGATACT-GGC-GCTGTACTTCTCAATGCCGGGATCAATACTCGGCAGTAG--A--CCA-CTCGACTTAAATTTCAA-AAGCCAACTACAGGCAATTACCCAACTCTGTCCCACAAAAGCCAAT-G-CTGGCTTATTGGcgcgtaataatgc
gi|4 : g-CAGTAT--GG-CGTCGTCCAATGCAGGCATTCG-GCGAC--TACAAA--CTGATTCAAT-GCAGGCATTGGACCAGTATGGC-GTCATCCAATGCAGACATTGG--GCGACTAA-AC-----TGATCGGCCGAGTATGGCGTAATTC--AATGCAGGC---ATTGGCCGAGTATGGAGTCGT--------------CCAATGCAATCACTGGGTG-ACT-ATGAAC-TGATTCAATGCAGGCATCGT---CCGACT--AT-GAAGTGATTTAATGTAGGCATTAATT-TG--GTGAACTATAGAGTCGTCCAATG-CAGGCA-CTGACCGAC-TC---GAA-AGTCGTCCAGTGCAGGCATTTACA
gi|4 : ggccTCGT-C--AATGTC-AGG-ATTTGGTTTACTTTAAAA--TGTA---AATGCC--TGCACTGG-AC-GA-CTTT--CGAGTCGG-TCAGTGCCTGCATTGGACGACTttttaaagtaaaccaaatcctgacattgacgaactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|5 : ggcccagtatggcgtcgtccaatgcaggcattcggcgactacaaactgattcaatgcaggcattggaccagtatggcgtcatccaatgcagacattgggcgactaaactgatcggccgagtatggcgtaattcaatgcaggcattggccgagtatggagtcgtccaatgcaatcactgggtgactatgaactgattcaatgcaggcatcgtccgactatgaagtgatttaatgtaggcattaatttggtgaactatagTGCATGTATTTGGCATATTCTGACGTCCTCCAATGCA-TGTATT-GGGCATATTCTGACGTCATCCAACGC-AGGTAATTGGCATATTCTGACGTCATGCAA-TGCAGGTATT-TGGCAAATTCTAAAGTCATTCAAT---ACAGACGTTACTAGA-C--TTT--GAA-GTCGTTCAATG--G--ATT-T-GC-----TTCAGAATCTG--TTAAT-GCCCGCATTGGATAACTTTAGA-GTAAAACAATGCATGCACTGA--GAA--AAAGAA-----Tactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|6 : ACTATAAACTGATTTAATG---CAGGC---ATTGGACCAGTAT---GGCGTCATCCAATGCAGACATT-G-GC--C-G-----A--CT-AT---ATAGCAGGCAATGGCCGAATATGGT-GTCATTCAATGCAGGCATTG---------AACAACGCTTTGAT-----------------ACTC----TGCTGA----ATT-GCAATGTAT----CTTTCAACAG--------CCAATGCATGCACTGGATGAAcgaacgacgcccgttctaggagaacattatantagagtaaaacaatgcatgcactgagaaaaatagtcaaacgacgcccgttctaggagaacattatgtgtacttgttccagcatttagacattaagacaaaaatgtatagtctaagttaaagtctaagttaattgcattcaggtacacaagtaaaatgttttcagcattttctcaaagtacattcaaatattcttaacttgaaaatactcttctaaaaaatacgctgatttgattttttttttttcaatttgctaaaacgtccattgaaattgctgaaaattttcgctagaattatgacagtgcgctagtgctttgcgatcgtaacaatttataacacataccgaaagttcgttattcaatttcaaaaatggat
gi|7 : tgAGTAT--GG-CGTCGTTCAATGCTTGCATA-GAGCGAC--TACAAA--ATGATTCAAT-GAAGGCATTGGACCAGTATGGC-GTCGTCCAATGCAGGCATTGGGCGAG--T-ACAAAT---TG-------------------ATTC--AATGCAGCC---ATTGGCCGTGTATGGCGTCCT--------------CTAATGCAGGCATTAGTTGAA-T-ACAAAC-TGATTCAATGCAGACATTAG-A-C-CAGT--AT-GGCGTCATTTACTACTAGCATTGG-C-TG--G----CTATGAACTGATTCAATG-CAGGCATTGGATC-ACTTT---GTC-AGGAG-CCAATGCAGGCATTtatctcatattggcctactttctcaggagccacatgcaattgcatgcctcaaataaacgtgtaccttaggacaatgcagacagtagtttacttttttcagagtcaatgaaagtattgatagaagcaaagctgagatagaatgacctgacatttgaggtctatgccttcttcagagtcattgcaagcactgaacttcttcctatgtgcagttagttcaagcattgcatgaccttctatctacagccaaagcagacggattta
gi|7 : --GAG--GAA-AA-----T-AT-----------------ATCT--AACG-AAACTAAACTGGCCGCA-ATGGCACTTT-----GAGAGTAGTCCAATGCCTGCATTGGCTC--CTGACAAAG-TGATCCAATGCCTGCATTG-AA-T-CAGTTCAT-AGC--CAGCCAATGCTAGTAGTAA-A-TGACG----CCAT--ACTGGTCTAATG-TCTGCATTGAATC-Aggactactctcaaagtgccattgcggccagtttagtttcgttagatatattttcctcttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|8 : agtatggcgtcgttcaatgcttgcatagagcgactacaaaatgattcaatgaaggcattggaccagtatggcgtcgtccaatgcaggcattgggcgagtacaaattgattcaatgcagccattggccgtgtatggcgtcctctaatgcaggcattagttgaatacaaacAA-TAT-------TGGCTTT-A-ACTCTCAAAATGATAAA-AGAAAAT--T-TAGTTATT-TT--ATCATGAA-A-GTT---GTT--TTT---AATTA--CA-C--GGGT---A--CATAAT----GTAAA---TAT-GGTTTGCCA-TATA-CACATATTCACTGAAATGA-CCAGCG-AA-AGTTGGCATGG-AAACATCAACGT-ACTGTTG-ATAAT---ATTT-TTAACAGCTTATAA-C-CA-GTTT----GCAATG-T-TTTTGCGAATAAT-AATT----------G-CG--TTTGAAATC-G--GG-A-TATA-TTTGCCGTAGCGTAAT-TAAA-TCCGTTCAC---AAT-TA-ACAC-CGA-ATGT-GATTAA-ACATGAGGAAA--TTGAATGA--GTT-TACAATACA-CCGA-CCAC-TAttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|9 : aTCGGAACT--AATTTTT--TTTTTGT----TCATA--TCATTTTTT-TATAATATACAACC-AATGTTTCTCAATACTATTGAGAGATTTGCAATGGAA-TAT-------TGACTTTTAC--TCTCAAAATGATAAA-A----AC--T-GAGTTAAT-TT--ATCAT-AA-A-GTTTTGGTTTTTTTTTAAAT----TA-TATAAGT--TAT-CAGATT----G-AAAGGATAT-GGTTTA--A-TCTA-TGTA--TTCACAAAAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GCAAGTTGCCTCAGAGTTATTTGCAATCGTTATAACAATAAGACATTTATTATAAATAATGTGTTCAAATAAAGTAGTTTTTGGATAATATTAAAAAATCAGGATTGGGCATAAAATATTTTGTCACACT
Unaligned ( gi|18 ): GGTCTCTTCTAAATCTGTTAACGATATGGTCAAGGTATTTAGGGAC
Alignments
lowQualScore : 11 11 22222222222 1 333333333 1111111 2222 1111 1111 11111111 111 1111 111 1111 11 11 1 1 1 1 1 1 111 1 111 1 2222 111 111111 1 3333333 1 11 222222222 1 2222 1 111 1 1 11 1 111 1 11 11 11 1 1 1 1 1 11 11 22222222 1 222 22222222 222 11 22 1 1 777777777777777777777777777777777777777777777 22222222 222 33333 222 11 11 1 111 1 1 2222 1 11 1 1 3333333 1 1 1 555555 1 11 66666666666666666 1 11 1 1 222222 1 222 5555555 11 2222 2 1 11 777777777777777777777777777777777777 1 222 1 11 33333 1 1 11 33333333 1 11 11 11 22222 1 1 1 1 1 1 2222222222222 1 1 11 222 222222 1 1 33 2222 1 1 11 1 11 1 1 1 1 11 1 11 3333 222 1 11111 111 33333333 11 7777777777777777777777777777777777777777 111 111111 555555555555555 111 22222222 11 222222222222 11 3333333333 11 2222222222 11111
lowQualScore : 33 22 11 8 00000000000 6 1 6 0 3 6 99 888888888 6 5 8888888 2222 5 0000 9999 5 66 5 5 5 11111111 000 2222 5 0 1 99 555 7777 6 0 1 8 11 8 8 11 0 0 2 0 0 0 4 0 0 1 777 0 0 555 0 1111 444 999999 0 3 4444444 0 33 777777777 0 1111 2 0 1 777 0 9 0 11 2 0 777 0 3 0 33 33 33 0 5 0 0 3 3 88 44 99999999 6 7 7 3 0 7 555 3 6 22222222 333 88 6 1 00 7 2 6 3 3 777777777777777777777777777777777777777777777 7 66666666 444 00000 6 333 6 6 44 6 88 7 6 3 888 999 5 5 1111 5 22 77 1 5 5 22 3333333 5 5 1 2 5 444444 5 88 00000000000000000 1 5 77 5 5 1 1 1 22 7 444444 3 333 6 6666666 88 8888 6 2 88 7 444444444444444444444444444444444444 3 555 3 0 0 88 22222 3 0 33 77777777 3 88 88 6 7 88 6 77777 6 6 3 7 5 5 5 1 1 1 5 1 5 3333333333333 1 1 5 1 1 5 1 1 1 1 88 22 1 1 000 1 777777 5 5 22 00 3333 5 1 5 88 22 5 1 22 1 22 1 1 1 88 5 5 1 1 5 1 5 88 22 22 1 5 22 66 88 2222 333 0 0 77777 1 3 111 55555555 11 0 0 0 8 0 1 8 1111111111111111111111111111111111111111 111 888888 4 0 333333333333333 5 4 1 555 6 0 6 55555555 11 8 5 0 0 444444444444 66 1 1111111111 8 0 00 8 7777777777 22222 4 1
lowQualScore : .. .. .. . ........... . . . . . . .. ......... . . ....... .... . .... .... . .. . . . ........ ... .... . . . .. ... .... . . . . .. . . .. . . . . . . . . . . ... . . ... . .... ... ...... . . ....... . .. ......... . .... . . . ... . . . .. . . ... . . . .. .. .. . . . . . . .. .. ........ . . . . . . ... . . ........ ... .. . . .. . . . . . ............................................. . ........ ... ..... . ... . . .. . .. . . . ... ... . . .... . .. .. . . . .. ....... . . . . . ...... . .. ................. . . .. . . . . . .. . ...... . ... . ....... .. .... . . .. . .................................... . ... . . . .. ..... . . .. ........ . .. .. . . .. . ..... . . . . . . . . . . . . . ............. . . . . . . . . . . .. .. . . ... . ...... . . .. .. .... . . . .. .. . . .. . .. . . . .. . . . . . . . .. .. .. . . .. .. .. .... ... . . ..... . . ... ........ .. . . . . . . . ........................................ ... ...... . . ............... . . . ... . . . ........ .. . . . . ............ .. . .......... . . .. . .......... ..... . .
lowQualScore : 88 22 00 0 99999999999 7 7 7 3 3 7 88 222222222 7 7 6666666 6666 0 6666 4444 0 99 0 0 0 88888888 000 3333 7 1 7 22 888 0000 0 8 4 0 00 0 0 88 8 0 5 0 0 0 2 0 0 2 000 0 2 888 0 2222 888 222222 0 2 0000000 0 88 222222222 0 2222 5 0 0 555 0 8 0 22 0 0 555 2 2 0 88 88 00 0 0 0 7 3 3 33 77 00000000 7 3 3 3 7 3 777 7 7 77777777 333 33 7 0 00 3 0 7 7 3 333333333333333333333333333333333333333333333 3 33333333 333 00000 7 333 7 7 77 7 33 3 7 3 777 000 0 5 5555 0 00 55 0 5 5 00 0000000 0 0 0 5 0 000000 0 00 55555555555555555 0 0 55 0 5 0 0 0 00 3 777777 3 333 7 7777777 33 3333 7 0 33 3 777777777777777777777777777777777777 3 777 3 7 7 33 00000 3 0 88 77777777 3 33 33 7 3 33 7 77777 7 7 3 3 0 5 5 0 0 0 0 0 0 5555555555555 0 0 5 0 0 0 0 0 0 0 00 00 0 0 555 0 555555 5 5 00 00 5555 0 0 0 55 00 0 0 00 0 00 0 0 0 55 5 0 0 0 0 0 5 55 00 00 0 5 00 55 33 3333 333 0 8 44444 0 2 000 44444444 00 8 8 6 0 6 0 0 3333333333333333333333333333333333333333 888 666666 6 8 333333333333333 7 0 0 999 7 7 7 99999999 00 0 0 6 8 444444444444 88 0 8888888888 0 6 44 0 8888888888 88888 2 0
consensus : ACTCTGAACT--AATATTT--TTTT-GTC---TCA-A--T-ATTTTTT-CATAATAT-CGATC-AAT-TGTATTAA--------AGAGATTTGAAATGGAA-TAT-------TGACTTTTACACTCTCAAAATGATAAA-A----AC--G-GAGTTAAT-TT--ATCAT-AA-A-GTT---GTTGTTTT---AATCA--CA-TATGAGT--TATCCAGATT----GAAAAGGATTT-GGTTTA--A-TCTA-TGTAT-TTCACAAAAATGG-TCGGCG-AA-AGTTGGTATGG-AAACGTCAATGC-ACTGTTG-ATTATA--ATTG-TTTGCAACTTTTCATC-CA-TTTT----GCAATT-T-TTTT--AAATACT-AATTACAC----G-G-CG--CTTGAAATT-G--AGTA-TATG-TTT----TTGCGTAATGGAAA-TCCGATNAT---AAT-TATACAC-ATA-ACGT-GATT-T-ACATGAAG-GA--TTGAATGA--GTTATGCAATGCA-GCGACCCAC-TAACG-CGAAA-GA--AATACTTGCCATGGG-CA--T-TTTCGCAAAAGAATTTACAATA-TAGCGAAATCGTTTCA--TTTTAACGCCAATGCAGA-ATT-TATAACTAT---TTT--TTGGTGAATTNCAGCATG-ACCGTAGCTCTCTCGCTTGTAGCGA-ATCTCT--TAAN---TCGGTCATGCCAACGG-ACTGGGC-GC-G-AC-TCTCAAT---GGGACCAATA-TCGGCAGTAG-AA--CCACCTCGACT---ATTTCAAGAAGCCAATAACAGGCAATTACCCAACTCTGT--CACAAAAGCCAAT-GCCCGGC--GTTGGAGCCACTATTTCGNGAGAGCCAATGNNGGCTTTGGNTGAATATCTGAACAGCCGATTGCAGNNTTAGTATACTAGAGAATATCGATTTCNTCCGATGGCAGGCGTTGGGACGGTACGACGTCATCCAATGCAGCATTTTTATCTTCCTGCAGGCATTGNCTATACTATAAAGCCTGACTCAATGCAGGNATTGGNCCANTNNTGGCGTCGTCCAA---TGCAGG-CA---TTGGGCGA-------CTAC--AACT----GATTCCAATGC-AGGCATTGGGCCA--GTTATGG-GTCG-TCC--C--GCGNC-TT-TCG-----TA--AACT-GATTT--ATG-CGGGCGATTGG--CC-GA--TATGGC-GTCGT-C--AATG-C-GGC-ATT-GGTCTACT--AAAA--TGGATTCAATGCA--GGCATTGGGAC-GA-CTATGGCGTGTCGT-CCAATGCAGGCATTGGGCGACTGCAAACCTGAATTCAAATGCAGNCATTGGNCNAGTATGCGTCTTCCCAATGCAGGCAATGGTTGACTAACAAACTGATTCAATGCAGGCATTTGGAGCAGTATGGCGTTNTCGAATGCAGGGCGTTGGGGCGACTGGCGNGAACTGATTNAGATNCAGGCATNGGACCANTGTGCGTCGTCCAAATGCTTGCATTGAGCGANTATACNTACNGANCCAAACTGNNGNCATTGGNACCAGTNTGGGCCCCGGGTGTGTCCAATGCNNGCATTCGAGCGGCTTGACTACAANTGATCTAATGCNNGCATCTGAACAGTATGGGTCGTCCAATGCTGCTATTGAAAGCGATACAAACTGTTTATGCANGNNTTNGGNNCANTNTGGCGTCNTCCAATGCAATGCATTCGGGCGNACTNTGACGTNATCCAACGCAAGGCAATTGGNNCATNNTGGCGTCGTNCAATTGCNNGCATTANGGCGAACTATAAANTGATTCAATG--ACAGGC---ATTGGA-CAGTAT--GGGCGTCGTCCAATGCAGGCATT-G-GCGAC-GTACAAA--CTGATTCAAT-GCAGGCATTGGACNAGTATGGC-GTCGTCCAATGCAGGCATTGG--GAG--TAACAA-----TGAT-----------------ATTC--AATGCAGGC---ATTGGCCGCGTATGGCGCCTT-----G--------CCAATG-CAGGCACTGGTTGAACT-ACGAAC-TGATTCAATGCAGGCATTGGAAC--C-AGT--AT-GGCGTCATTTAATGCTAGCATTGG-N-TG--G----CTATGAANTGGTCC--------AATG-CAGGCATTGGATC-AC-TT---GAN-AGTC-G-NCGGTGCGGGCATTGACA
Reference ( family-6305 ) : ACTCTGAACT--AATATTT--TTTT-GTC---TCA-A--T-ATTTTTT-CATAATAT-CGATC-AAT-TGTATTAA--------AGAGATTTGAAATGGAA-TAT-------TGACTTTTACACTCTCAAAATGATAAA-A----AC--G-GAGTTAAT-TT--ATCAT-AA-A-GTT---GTTGTTTT---AATCA--CA-TATGAGT--TATCCAGATT----GAAAAGGATTT-GGTTTA--A-TCTA-TGTAT-TTCACAAAAATGG-TCGGCG-AA-AGTTGGTATGG-AAACGTCAATGC-ACTGTTG-ATTATA--ATTG-TTTGCAACTTTTCATC-CA-TTTT----GCAATT-T-TTTT--AAATACT-AATTACAC----G-G-CG--CTTGAAATT-G--AGTA-TATG-TTT----TTGCGTAATGGAAA-TCCGATNAT---AAT-TATACAC-ATA-ACGT-GATT-T-ACATGAAG-GA--TTGAATGA--GTTATGCAATGCA-GCGACCCAC-TAACG-CGAAA-GA--AATACTTGCCATGGG-CA--T-TTTCGCAAAAGAATTTACAATA-TAGCGAAATCGTTTCA--TTTTAACGCCAATGCAGA-ATT-TATAACTAT---TTT--TTGGTGAATTNCAGCATG-ACCGTAGCTCTCTCGCTTGTAGCGA-ATCTCT--TAAN---TCGGTCATGCCAACGG-ACTGGGC-GC-G-AC-TCTCAAT---GGGACCAATA-TCGGCAGTAG-AA--CCACCTCGACT---ATTTCAAGAAGCCAATAACAGGCAATTACCCAACTCTGT--CACAAAAGCCAAT-GCCCGGC--GTTGGAGCCACTATTTCGNGAGAGCCAATGNNGGCTTTGGNTGAATATCTGAACAGCCGATTGCAGNNTTAGTATACTAGAGAATATCGATTTCNTCCGATGGCAGGCGTTGGGACGGTACGACGTCATCCAATGCAGCATTTTTATCTTCCTGCAGGCATTGNCTATACTATAAAGCCTGACTCAATGCAGGNATTGGNCCANTNNTGGCGTCGTCCAA---TGCAGG-CA---TTGGGCGA-------CTAC--AACT----GATTCCAATGC-AGGCATTGGGCCA--GTTATGG-GTCG-TCC--C--GCGNC-TT-TCG-----TA--AACT-GATTT--ATG-CGGGCGATTGG--CC-GA--TATGGC-GTCGT-C--AATG-C-GGC-ATT-GGTCTACT--AAAA--TGGATTCAATGCA--GGCATTGGGAC-GA-CTATGGCGTGTCGT-CCAATGCAGGCATTGGGCGACTGCAAACCTGAATTCAAATGCAGNCATTGGNCNAGTATGCGTCTTCCCAATGCAGGCAATGGTTGACTAACAAACTGATTCAATGCAGGCATTTGGAGCAGTATGGCGTTNTCGAATGCAGGGCGTTGGGGCGACTGGCGNGAACTGATTNAGATNCAGGCATNGGACCANTGTGCGTCGTCCAAATGCTTGCATTGAGCGANTATACNTACNGANCCAAACTGNNGNCATTGGNACCAGTNTGGGCCCCGGGTGTGTCCAATGCNNGCATTCGAGCGGCTTGACTACAANTGATCTAATGCNNGCATCTGAACAGTATGGGTCGTCCAATGCTGCTATTGAAAGCGATACAAACTGTTTATGCANGNNTTNGGNNCANTNTGGCGTCNTCCAATGCAATGCATTCGGGCGNACTNTGACGTNATCCAACGCAAGGCAATTGGNNCATNNTGGCGTCGTNCAATTGCNNGCATTANGGCGAACTATAAANTGATTCAATG--ACAGGC---ATTGGA-CAGTAT--GGGCGTCGTCCAATGCAGGCATT-G-GCGAC-GTACAAA--CTGATTCAAT-GCAGGCATTGGACNAGTATGGC-GTCGTCCAATGCAGGCATTGG--GAG--TAACAA-----TGAT-----------------ATTC--AATGCAGGC---ATTGGCCGCGTATGGCGCCTT-----G--------CCAATG-CAGGCACTGGNTGAACT-ACGAAC-TGATTCAATGCAGGCATTGGAAC--C-AGT--AT-GGCGTCATTTAATGCTAGCATTGG-C-TG--G----CTATGAANTGGTCC--------AATG-CAGGCATCGGATC-AC-TC---GAA-AGTC-G-CCGGTGCGGGCATTNACA
gi|1 : ACTCTGAACCTAAATATTT--TTTT-GTC---TCA-A--T-ATTTTTT-CATAATAT-TGATC-CAT-TGTATTAA--------AGATATTTGAAATGGA--TAT-------TGACTTTTACACTCTCAAAA-GATAAA-A----AC--G-GAGTTAAT-TTTGATCAT-CA-A-ATT---GTTGTTTT---AATCA--TA-TATGAGT--TATCCAGATTTAATAAAAAGGATTT-GGTTTC--A-TCTA-TGTAT-TTAACAAAAATGGGTCGGCGCAA-AGTTGGTATGG-AAACTCTAATGC-ACTGTTGGATTATATAATTG-GTTGCAACTTTTTATC-CA-TTTT----GCAATT-TCTTTT--AAAAACT-AATTACAA----G-GGCT--CTTGAAATT-GTTAATA-TATG-TTT----TTGCGAAATGGAAA-CCGAATAAT---AAT-TATATTC-ATA-GCAT-GATT-T-ACATGAAG-AA--TTGAATGA--GTTATGGAATGCA-GCAACCCAC-TATCGACGAAAAGA--AATACT-GCCATGG--CA--T-TTTTGCAAAA-AATGGACAATA-TAGCGAAATCGTTTCAATTTTTATTGCCAAT-CAGACATT-TA-AACTAT---TAT--TTGATGAATACCAGCAT--ACCGTAGCTTTCGCGCTTGTAACGA-ATCTTTAGTAAGAATTCAATCA---CAGC----CTGGA--AT-G-AC-TTTCAAT---GA---CAATA-GTGGCAGTAG-AATACCACTCAGAAT---ATTTCAAGAA-CCAATAACAAACA-TTACCCCACTCTGT--CACAAAAGC--AT-GCCCGGC--GTTGGAGCCACTATTTCGC---AGCCAATGGAGGCTTTGGGTGAATA-CTGAACAACCAAT-GCAGCGTTAGTATACTAGA-AATAT-GATTTCATCAGATGGCAGGTGTTGGG--GGT-CGACATCATCCAATGTAGCATTTTTATCTTCCTGCAGGCATTGTCTATACTATAAA--CTGA-TCAATGCAGGCATTGGACCAGTCCTGGTGTCGTCCAA---TGCAGG-TAGGATTGAGCGA-------CTAC--AACT----GATTCCAATGC-ATGCATTGGACCA--GTTATGG-GTCGGTCC--CAAGCGAC------G-----TA--AACT-GATTTCCATG-CAGGCAATTGGAACC-AA--CAAGGC-GTCGT-CGAAATG-C-G-C--TT-GAGCGACT--AAAAAATGGATTCAATGCAACGGCATTGGGAC-GAGTTATGGCGTGTCGT-CCAATGCAGGTAT-GGGCGAGTACAAACCTGA-TTCAAATGCAGCCATTGGCCGAGTATGCGTCTTCCCAATGCAGGCAATGGTTGACTAACAAACTGATTCAATGCAGGCATTTGGAGCAGTATGG-GTTGTCGAATGCAGGGCATTGGGGCGACTGGTGTAAACTGATTGAAATGCAGGCATTGGACCAGTATGCGTCGTCCAAATGCTTGCATTGAGCGACTATACATACTGATTCAA--TGCAGGCATTGGAACCAGTATGGGCCCCGGGTGTGTCCAATGCAGGCATTC-AGCG----GACTACAACT-ATTTAATGCAGGCAT-TGAACAGTATGGGTCGTCCAATGCTGCTATTGAAAGCGATACAAACTGTTTATGTAGGATTTGGGACCAGTATGGCGTCGTCCA--GCAATGCATTCAAACGAACTATAAC-TGATTCAATGCAAGGC--TTGGACCATAATGGCGTCGTTCAATTGCTTGCATTAGAGCGAACAACAAAA-GATTCAATGAAAAAGGC---ATTGGA-CAGTATGGGGGCGTCGTCCAATGCAGGCATT-G-GCGACAGTA-AAA--CGGATTCCAT-GCAAGCATTGGCCTAGTATGACGGTCGTCCAATGCAGGCATGGG--GAG--TAACAA-----TGAT-----------------ATTCAAAATGCA-GC---ATTGGCCGTGTATGGCGCCT---------------CTAATG-CAGGCA-TAGTTGAAAT-ACAAACATGATTC-ATGCAGACATTAGAACCAC-AGT--ATGGGCGT-ATTT-ATACTAGCATTGG-CTTG--G----CTATGAAATGAT-T--------AATGCCAGGCAT-GGATC-AC-TTATAGAACAGTT-G-AAGGGGAGGGCATTGACA
gi|10 : GAG-GAATATATCTACGAAACTAAACTGGCGCCATTGGCAC---TTTG------AGGTG-GTCC-ATGCCTGCATT-GAGCGGCTTGACTA-AAGTGATC--ATGCCTGCATCTGAA
gi|11 : TTGGCCCATTGTTGGCGTCGTCCAATTTTCTAGGCCA---TTGGCCGAATTCCATTTACTAAACTTGAAAATTTCAATACTAGGCATTTGGTCAATGTTATG--------CC--T--GCGCT-TT-TCA-----TATTAACTCAATTT---TG-CAGGCATTTGG--CCTGT--TATGGT-GTCAT-C--tctttatatcaatcaacagaattgcttttttgctcatcaaaaataaaaccgactaatttcttagtgttcattagagcattatgaattgtaataaaaatgag
gi|12 : ttcaatttgaatggctacA-A--T-ATTTT------AGTTT-AGATCTAAA-TGTTTTGA---------GTGATTTTAAATGAAA-TAT-------TGGCTTTTAC--TTTCAAAATGATAAA-A----AC--T-GAGTTAAT-TT--ATCAT-AA-G-A-----GTTGTTTT-----TCA--CA-CATGttataccctacatcagttgggct
gi|13 : atcactcaaaacattaagatcttataacttggacaatCTCTGAACT--ATTTTCT--TTTT-GTC----CA-AATT-ATTTTTT-CATAATATTCGATC-AAT--GTATTAA---------GAGATTTGAAAAGGAA-TAT-------TGACTTTT--ACTCTCAAAATGATAAA-A----ACTAGTAAGTTAAT-TT---------G-A-GTT---GT--TTTT---AAT----CA-TATGAGT--TAcac
gi|15 : tgcgATGGCGTTTTCGAATGCA-GGCGTTG----AAC--GC-AGAACTGATTCAGATTC-GACATAAGACCACTGTG
gi|16 : tggATG-CAGGCGCTGGTCGA-CT-ATGAAC-TGATTCACTGCAGGCATTGG
gi|17 : ccCTTTTAC--TCTCGAAATGATAAA-A----AC--T-GAGTTGAT-TT--ATCAT-AAGA-GTT---Ggcg
gi|2 : ACTCTGAATT--AA-ATTT--TTTT-GTCAAATTA-T--T-TTTTTTT-TATATTAA-CAATC-AAT-GGTATTAAT-------AGA-ATTTGAA-TGGAA-TATCATGTATTGACTTTC-TACTCTCAA--TGATAAATA----AC--G-AAGT--AT-TT--ATCAT-AA-A-GT-------GTTTT---AATCAATCAATGTG-GT--TATC-AGATT----GAAG-GAATTT-GGTTTA--A-TCTA-TGTAT-T-CACAAAAATGG-TCGG-G-AACAGTTGGTATGG-AAACGTCAATGT-ACTGTTG-ATCATA--ATTG-TTTGCCACTGTTCAT--CA-TTTTGGCCGCAATTAT-TTTT--AA--ACT-AATTACAT----GTG-CG--CTTGAAATTCG--TATG-TATGTTTT----TTGCGTAATGGAAA-TCCGATCAT---AAT-TTAACACGATA-TCATCGATT-TAATATG-AG-GA--TTGAATGA--CTTA-GCAATGCACGCGACCAACTTAATA-TGAAA-AATGAATGC-TGCCATGGG-TATTT-TTTCGGCAAAGAA-TTACAATACTAAGAAAATCG-TTCA--TTTTAACGTCAATGCAGA-AAT-T-TAACTAT---TTT--TT-GTCAATTACAGCATG-ATCGT-GCT---TCGCTTGTAGAGA-ATCTCT--TCTC---TCGGTCATGCCAACAG-ACTGGGTGGC-G-ACATCTC-AT---TGGACCAATA-T-GGCAGTAGCAA--CCACCTCGACT---ATTTCAAGAAGCCAATATGAGGC-ATTA-CCAACTCTGT--CAC--AAGCCAATCGCAGGCC--ATTGGA-CCAC-ATTTCAAGAGAG-CAATGCTG--TTTGGTTGAATATCTGAACAGCCGATTGCAGGTTTAG-------GAGAATATCAATTTCTTTCAAT-GCAGGCGTTGGGAC---ACAA-GTCATCCAATGC--CA-----------------GCATTGGTTATA-TATAAAGCTTGACTCAATGC-GGAATTGGGCCCATTATGGCGGCGTCC-A---TG-AGG-CA---TT-GGCGAT------CTAC--AACT----GATTCATATGCAAGGCATTGGG-CA--G--ATGGCGTCG-TCCAAT--GCGGCATTGTCAGCTGTTA--AACT-GATTC--ATGACGGGCGATTGG--CC-AAGTTTTGGCGGTCGTAC--AATG-CAGGCAATT-GGTCTACT--TAAC--T-GATTCAATGCA--GGCATTGGGCCTG---TATGGCAT-CCGTCCCAATGCAGGCATTGGGCGACTGTAAA-CTGAATTC-AATGCAGGCATTGGGCCAGTATGCGc
gi|3 : cTATTTCATTTC-GCA---TTA-G--T-GCTTGCTGCATTGCAT-CGATC-A-T-TATATTTA--------AGATATTTGAAATGGAACTAT-------GTACTTTTAC--TCCCAAAATGATAAA-A----ACT-G-AAGTTAATCTT--ATTAT-AA-AAGTT-----TGTTTT---AATCA--CT-TATGAGTATTATC-AAATT----GAAAAGGATTTTGGTTTA--AATCTAATGTAC-TTCACAAAAATGG-TCAGCG-AA-AGTTGGTATGGAAAACATCAATGCGATCGTTG-ATTATA--ATTGTTTTGCAACTTTTCATCGCATTTTT----GCAATT-C-TTTT--ATTTGCTAAATGACACCAGTG-G-CGCACTTGAAATT-T--AGTATTATG-TTT----TTGCGTAATGGACATTCCGATAGTATGAATATATGTAC-ATATACAT-GATT-T-AAATGAAG-GAATTTGAATGACCGCTTTGCAATGCA-GCAG--CAC-TAATG-CGAAT-GA--AATACTTGCGATGGGTCA--TGTTTCGCAAAAGAATTTACAA-A-TAGCAAAATCTTTTCA---TTTAAAGCCAATGCAGA-TTTATATAACTATATCTTTGATTGGTGGCTTTAAGCATGTACTATATCTCTCTC--------CGAGATC------AAA-------CCATGC--ACGATACT-GGC-GCTGTACTTCTCAATGCCGGGATCAATACTCGGCAGTAG--A--CCA-CTCGACTTAAATTTCAA-AAGCCAACTACAGGCAATTACCCAACTCTGTCCCACAAAAGCCAAT-G-CTGGCTTATTGGcgcgtaataatgc
gi|4 : g-CAGTAT--GG-CGTCGTCCAATGCAGGCATTCG-GCGAC--TACAAA--CTGATTCAAT-GCAGGCATTGGACCAGTATGGC-GTCATCCAATGCAGACATTGG--GCGACTAA-AC-----TGATCGGCCGAGTATGGCGTAATTC--AATGCAGGC---ATTGGCCGAGTATGGAGTCGT--------------CCAATG-CAATCACTGGGTG-ACT-ATGAAC-TGATTCAATGCAGGCATCGT--C--CGACT--AT-GAAGTGATTTAATGTAGGCATTAATT-TG--GTGAACTATAGAGTCGTCC--------AATG-CAGGCA-CTGACCGAC-TC---GAA-AGTC-GTCCAGTGCAGGCATTTACA
gi|4 : ggccTC-----G--------TCAATGTCAGGATTTGGTTTA-CT-TTAAAA-TG--TAAATGCCTGCACTGGA-C--G-ACT--TT-CGAGTCGGTCAGTGCCTGCATTGG-A-CG--A----CTCT---ATAGTTCACCAAATTAATG-CCTACATTAAATC-AC-TT---CAT-AGTCGG-ACGATGCCTGCATTGttttaaagtaaaccaaatcctgacattgacgaactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|4 : ggcccagtatggcgtcgtccaatgcaggcattcggcgactacaaactgattcaatgcaggcattggaccagtatggcgtcatccaatgcagacattgggcgactaaactgatcggccgagtatggcgtaattcaatgcaggcattggccgagtatggagtcgtccaatgcaatcactgggtgactatgaactgatTCGT-C--AATGTC-AGG-ATTTGGTTTACTTTAAAA--TGTA---AATGCC--TGCACTGG-AC-GA-CTTT--CGAGTCGG-TCAGTGCCTGCATTGGACGACTactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|5 : ggcccagtatggcgtcgtccaatgcaggcattcggcgactacaaactgattcaatgcaggcattggaccagtatggcgtcatccaatgcagacattgggcgactaaactgatcggccgagtatggcgtaattcaatgcaggcattggccgagtatggagtcgtccaatgcaatcactgggtgactatgaactgattcaatgcaggcatcgtccgactatgaagtgatttaatgtaggcattaatttggtgaactatagTGCATGTATTTGGCATATTCTGACGTCCTCCAATGCA-TGTATT-GGGCATATTCTGACGTCATCCAACGC-AGGTAATTGGCATATTCTGACGTCATGCAA-TGCAGGTATT-TGGCAAATTCTAAAGTCATTCAAT---ACAGACGTTACTAGA-C--TTT--GAA-GTCGTTCAATG--G--ATT-T-GC-----TTCAGAATCTG--TTAAT-GCCCGCATTGGATAACTTTAGA-GTAAAACAATGCATGCACTGA--GAA--AAAGAA-----Tactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|6 : ACTATAAACTGATTTAATG---CAGGC---ATTGGACCAGTAT---GGCGTCATCCAATGCAGACATT-G-GC--C-G-----A--CT-AT---ATAGCAGGCAATGGCCGAATATGGT-GTCATTCAATGCAGGCATTG---------AACAACGCTTTGAT-----------------ACTC----TGCTGA----ATT-GCAATGTAT----CTTTCAACAG--------CCAATG-CATGCACTGGATGAAcgaacgacgcccgttctaggagaacattatantagagtaaaacaatgcatgcactgagaaaaatagtcaaacgacgcccgttctaggagaacattatgtgtacttgttccagcatttagacattaagacaaaaatgtatagtctaagttaaagtctaagttaattgcattcaggtacacaagtaaaatgttttcagcattttctcaaagtacattcaaatattcttaacttgaaaatactcttctaaaaaatacgctgatttgattttttttttttcaatttgctaaaacgtccattgaaattgctgaaaattttcgctagaattatgacagtgcgctagtgctttgcgatcgtaacaatttataacacataccgaaagttcgttattcaatttcaaaaatggat
gi|7 : tgAGTAT--GG-CGTCGTTCAATGCTTGCATA-GAGCGAC--TACAAA--ATGATTCAAT-GAAGGCATTGGACCAGTATGGC-GTCGTCCAATGCAGGCATTGGGCGAG--T-ACAAAT---TG-------------------ATTC--AATGCAGCC---ATTGGCCGTGTATGGCGTCCT--------------CTAATG-CAGGCATTAGTTGAA-T-ACAAAC-TGATTCAATGCAGACATTAG-AC--C-AGT--AT-GGCGTCATTTACTACTAGCATTGG-C-TG--G----CTATGAACTGATTC--------AATG-CAGGCATTGGATC-ACTTT---GTC-AGGA-G-CCAATGCAGGCATTtatctcatattggcctactttctcaggagccacatgcaattgcatgcctcaaataaacgtgtaccttaggacaatgcagacagtagtttacttttttcagagtcaatgaaagtattgatagaagcaaagctgagatagaatgacctgacatttgaggtctatgccttcttcagagtcattgcaagcactgaacttcttcctatgtgcagttagttcaagcattgcatgaccttctatctacagccaaagcagacggattta
gi|7 : --GAG--GAA-AA-----T-AT-----------------ATCT--AACG-AAACTAAACTGGCCGCA-ATGGCACTTT-----GAGAGTAGTCCAATG-CCTGCATTGGCTC--CTGACAAAG-TGATCCAATGCCTGCATTG-AAT--C-AGTTCAT-AGC--CAGCCAATGCTAGTAGTAA-A-TGACG----CCAT--ACTGGTCT--------AATG-TCTGCATTGAATC-Aggactactctcaaagtgccattgcggccagtttagtttcgttagatatattttcctcttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|8 : agtatggcgtcgttcaatgcttgcatagagcgactacaaaatgattcaatgaaggcattggaccagtatggcgtcgtccaatgcaggcattgggcgagtacaaattgattcaatgcagccattggccgtgtatggcgtcctctaatgcaggcattagttgaatacaaacAA-TAT-------TGGCTTT-A-ACTCTCAAAATGATAAA-AGAAAAT--T-TAGTTATT-TT--ATCATGAA-A-GTT---GTT--TTT---AATTA--CA-C--GGGT---A--CATAAT----GTAAA---TAT-GGTTTGCCA-TATA-CACATATTCACTGAAATGA-CCAGCG-AA-AGTTGGCATGG-AAACATCAACGT-ACTGTTG-ATAAT---ATTT-TTAACAGCTTATAA-C-CA-GTTT----GCAATG-T-TTTTGCGAATAAT-AATT----------G-CG--TTTGAAATC-G--GG-A-TATA-TTTGCCGTAGCGTAAT-TAAA-TCCGTTCAC---AAT-TA-ACAC-CGA-ATGT-GATTAA-ACATGAGGAAA--TTGAATGA--GTT-TACAATACA-CCGA-CCAC-TAttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|9 : aTCGGAACT--AATTTTT--TTTTTGT----TCATA--TCATTTTTT-TATAATATACAACC-AATGTTTCTCAATACTATTGAGAGATTTGCAATGGAA-TAT-------TGACTTTTAC--TCTCAAAATGATAAA-A----AC--T-GAGTTAAT-TT--ATCAT-AA-A-GTTTTGGTTTTTTTTTAAAT----TA-TATAAGT--TAT-CAGATT----G-AAAGGATAT-GGTTTA--A-TCTA-TGTA--TTCACAAAAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GCAAGTTGCCTCAGAGTTATTTGCAATCGTTATAACAATAAGACATTTATTATAAATAATGTGTTCAAATAAAGTAGTTTTTGGATAATATTAAAAAATCAGGATTGGGCATAAAATATTTTGTCACACT
Unaligned ( gi|18 ): GGTCTCTTCTAAATCTGTTAACGATATGGTCAAGGTATTTAGGGAC
Alignments
lowQualScore : 11 11 22222222222 1 333333333 1111111 2222 1111 1111 11111111 111 1111 111 1111 11 11 1 1 1 1 1 1 111 1 111 1 2222 111 111111 1 3333333 1 11 222222222 1 2222 1 111 1 1 11 1 111 1 11 11 11 1 1 1 1 1 11 11 22222222 1 222 22222222 222 11 22 1 1 777777777777777777777777777777777777777777777 22222222 222 33333 222 11 11 1 111 1 1 2222 1 11 1 1 3333333 1 1 1 555555 1 11 66666666666666666 1 11 1 1 222222 1 222 5555555 11 2222 2 1 11 777777777777777777777777777777777777 1 222 1 11 33333 1 1 11 33333333 1 11 11 11 22222 1 1 1 1 1 1 2222222222222 1 1 11 222 222222 1 1 33 2222 1 1 11 1 11 1 1 1 1 11 1 11 3333 222 1 11111 111 33333333 11 666666666666666666666666666666666666666 111 111111 555555555555555 111 22222222 11 22222222222 11 22222222 2222222 111111
lowQualScore : 33 22 11 8 00000000000 6 1 6 0 3 6 99 888888888 6 5 8888888 2222 5 0000 9999 5 66 5 5 5 11111111 000 2222 5 0 1 99 555 7777 6 0 1 8 11 8 8 11 0 0 2 0 0 0 4 0 0 1 777 0 0 555 0 1111 444 999999 0 3 4444444 0 33 777777777 0 1111 2 0 1 777 0 9 0 11 2 0 777 0 3 0 33 33 33 0 5 0 0 3 3 88 44 99999999 6 7 7 3 0 7 555 3 6 22222222 333 88 6 1 00 7 2 6 3 3 777777777777777777777777777777777777777777777 7 66666666 444 00000 6 333 6 6 44 6 88 7 6 3 888 999 5 5 1111 5 22 77 1 5 5 22 3333333 5 5 1 2 5 444444 5 88 00000000000000000 1 5 77 5 5 1 1 1 22 7 444444 3 333 6 6666666 88 8888 6 2 88 7 444444444444444444444444444444444444 3 555 3 0 0 88 22222 3 0 33 77777777 3 88 88 6 7 88 6 77777 6 6 3 7 5 5 5 1 1 1 5 1 5 3333333333333 1 1 5 1 1 5 1 1 1 1 88 22 1 1 000 1 777777 5 5 22 00 3333 5 1 5 88 22 5 1 22 1 22 1 1 1 88 5 5 1 1 5 1 5 88 22 22 1 5 22 66 88 2222 333 0 0 77777 1 3 111 55555555 11 0 0 0 8 0 1 8 3 000000000000000000000000000000000000000 111 888888 4 0 333333333333333 5 4 0 555 6 0 6 55555555 11 8 5 0 0 22222222222 66 1 6 99999999 8 0 3 3 8 8 0000000 333333 6
lowQualScore : .. .. .. . ........... . . . . . . .. ......... . . ....... .... . .... .... . .. . . . ........ ... .... . . . .. ... .... . . . . .. . . .. . . . . . . . . . . ... . . ... . .... ... ...... . . ....... . .. ......... . .... . . . ... . . . .. . . ... . . . .. .. .. . . . . . . .. .. ........ . . . . . . ... . . ........ ... .. . . .. . . . . . ............................................. . ........ ... ..... . ... . . .. . .. . . . ... ... . . .... . .. .. . . . .. ....... . . . . . ...... . .. ................. . . .. . . . . . .. . ...... . ... . ....... .. .... . . .. . .................................... . ... . . . .. ..... . . .. ........ . .. .. . . .. . ..... . . . . . . . . . . . . . ............. . . . . . . . . . . .. .. . . ... . ...... . . .. .. .... . . . .. .. . . .. . .. . . . .. . . . . . . . .. .. .. . . .. .. .. .... ... . . ..... . . ... ........ .. . . . . . . . . ....................................... ... ...... . . ............... . . . ... . . . ........ .. . . . . ........... .. . . ........ . . . . . . ....... ...... .
lowQualScore : 88 22 00 0 99999999999 7 7 7 3 3 7 88 222222222 7 7 6666666 6666 0 6666 4444 0 99 0 0 0 88888888 000 3333 7 1 7 22 888 0000 0 8 4 0 00 0 0 88 8 0 5 0 0 0 2 0 0 2 000 0 2 888 0 2222 888 222222 0 2 0000000 0 88 222222222 0 2222 5 0 0 555 0 8 0 22 0 0 555 2 2 0 88 88 00 0 0 0 7 3 3 33 77 00000000 7 3 3 3 7 3 777 7 7 77777777 333 33 7 0 00 3 0 7 7 3 333333333333333333333333333333333333333333333 3 33333333 333 00000 7 333 7 7 77 7 33 3 7 3 777 000 0 5 5555 0 00 55 0 5 5 00 0000000 0 0 0 5 0 000000 0 00 55555555555555555 0 0 55 0 5 0 0 0 00 3 777777 3 333 7 7777777 33 3333 7 0 33 3 777777777777777777777777777777777777 3 777 3 7 7 33 00000 3 0 88 77777777 3 33 33 7 3 33 7 77777 7 7 3 3 0 5 5 0 0 0 0 0 0 5555555555555 0 0 5 0 0 0 0 0 0 0 00 00 0 0 555 0 555555 5 5 00 00 5555 0 0 0 55 00 0 0 00 0 00 0 0 0 55 5 0 0 0 0 0 5 55 00 00 0 5 00 55 33 3333 333 0 8 44444 0 2 000 44444444 00 8 8 6 0 6 0 0 2 111111111111111111111111111111111111111 888 666666 6 8 333333333333333 7 0 3 999 7 7 7 99999999 00 0 0 6 8 22222222222 88 0 4 00000000 0 6 8 2 0 0 4444444 222222 4
consensus : ACTCTGAACT--AATATTT--TTTT-GTC---TCA-A--T-ATTTTTT-CATAATAT-CGATC-AAT-TGTATTAA--------AGAGATTTGAAATGGAA-TAT-------TGACTTTTACACTCTCAAAATGATAAA-A----AC--G-GAGTTAAT-TT--ATCAT-AA-A-GTT---GTTGTTTT---AATCA--CA-TATGAGT--TATCCAGATT----GAAAAGGATTT-GGTTTA--A-TCTA-TGTAT-TTCACAAAAATGG-TCGGCG-AA-AGTTGGTATGG-AAACGTCAATGC-ACTGTTG-ATTATA--ATTG-TTTGCAACTTTTCATC-CA-TTTT----GCAATT-T-TTTT--AAATACT-AATTACAC----G-G-CG--CTTGAAATT-G--AGTA-TATG-TTT----TTGCGTAATGGAAA-TCCGATNAT---AAT-TATACAC-ATA-ACGT-GATT-T-ACATGAAG-GA--TTGAATGA--GTTATGCAATGCA-GCGACCCAC-TAACG-CGAAA-GA--AATACTTGCCATGGG-CA--T-TTTCGCAAAAGAATTTACAATA-TAGCGAAATCGTTTCA--TTTTAACGCCAATGCAGA-ATT-TATAACTAT---TTT--TTGGTGAATTNCAGCATG-ACCGTAGCTCTCTCGCTTGTAGCGA-ATCTCT--TAAN---TCGGTCATGCCAACGG-ACTGGGC-GC-G-AC-TCTCAAT---GGGACCAATA-TCGGCAGTAG-AA--CCACCTCGACT---ATTTCAAGAAGCCAATAACAGGCAATTACCCAACTCTGT--CACAAAAGCCAAT-GCCCGGC--GTTGGAGCCACTATTTCGNGAGAGCCAATGNNGGCTTTGGNTGAATATCTGAACAGCCGATTGCAGNNTTAGTATACTAGAGAATATCGATTTCNTCCGATGGCAGGCGTTGGGACGGTACGACGTCATCCAATGCAGCATTTTTATCTTCCTGCAGGCATTGNCTATACTATAAAGCCTGACTCAATGCAGGNATTGGNCCANTNNTGGCGTCGTCCAA---TGCAGG-CA---TTGGGCGA-------CTAC--AACT----GATTCCAATGC-AGGCATTGGGCCA--GTTATGG-GTCG-TCC--C--GCGNC-TT-TCG-----TA--AACT-GATTT--ATG-CGGGCGATTGG--CC-GA--TATGGC-GTCGT-C--AATG-C-GGC-ATT-GGTCTACT--AAAA--TGGATTCAATGCA--GGCATTGGGAC-GA-CTATGGCGTGTCGT-CCAATGCAGGCATTGGGCGACTGCAAACCTGAATTCAAATGCAGNCATTGGNCNAGTATGCGTCTTCCCAATGCAGGCAATGGTTGACTAACAAACTGATTCAATGCAGGCATTTGGAGCAGTATGGCGTTNTCGAATGCAGGGCGTTGGGGCGACTGGCGNGAACTGATTNAGATNCAGGCATNGGACCANTGTGCGTCGTCCAAATGCTTGCATTGAGCGANTATACNTACNGANCCAAACTGNNGNCATTGGNACCAGTNTGGGCCCCGGGTGTGTCCAATGCNNGCATTCGAGCGGCTTGACTACAANTGATCTAATGCNNGCATCTGAACAGTATGGGTCGTCCAATGCTGCTATTGAAAGCGATACAAACTGTTTATGCANGNNTTNGGNNCANTNTGGCGTCNTCCAATGCAATGCATTCGGGCGNACTNTGACGTNATCCAACGCAAGGCAATTGGNNCATNNTGGCGTCGTNCAATTGCNNGCATTANGGCGAACTATAAANTGATTCAATG--ACAGGC---ATTGGA-CAGTAT--GGGCGTCGTCCAATGCAGGCATT-G-GCGAC-GTACAAA--CTGATTCAAT-GCAGGCATTGGACNAGTATGGC-GTCGTCCAATGCAGGCATTGGG--AG--TAACAA-----TGAT-----------------ATTC--AATGCAGGC---ATTGGCCGCGTATGGCGCCTT-----G--------CCAATG-CAGGCACTGGTTGAACT-ACGAAC-TGATTCAATGCAGGCATTGGAAC--C-AGT--AT-GGCGTCATTTAATGCTAGCATTG----G-NTGA-GCTATGAANTGGTCCA--------ATG-CAGGCATTGGATC-AC-TT----NACAGTC-G-AC-GATGCNGGCATTGACA
Reference ( family-6305 ) : ACTCTGAACT--AATATTT--TTTT-GTC---TCA-A--T-ATTTTTT-CATAATAT-CGATC-AAT-TGTATTAA--------AGAGATTTGAAATGGAA-TAT-------TGACTTTTACACTCTCAAAATGATAAA-A----AC--G-GAGTTAAT-TT--ATCAT-AA-A-GTT---GTTGTTTT---AATCA--CA-TATGAGT--TATCCAGATT----GAAAAGGATTT-GGTTTA--A-TCTA-TGTAT-TTCACAAAAATGG-TCGGCG-AA-AGTTGGTATGG-AAACGTCAATGC-ACTGTTG-ATTATA--ATTG-TTTGCAACTTTTCATC-CA-TTTT----GCAATT-T-TTTT--AAATACT-AATTACAC----G-G-CG--CTTGAAATT-G--AGTA-TATG-TTT----TTGCGTAATGGAAA-TCCGATNAT---AAT-TATACAC-ATA-ACGT-GATT-T-ACATGAAG-GA--TTGAATGA--GTTATGCAATGCA-GCGACCCAC-TAACG-CGAAA-GA--AATACTTGCCATGGG-CA--T-TTTCGCAAAAGAATTTACAATA-TAGCGAAATCGTTTCA--TTTTAACGCCAATGCAGA-ATT-TATAACTAT---TTT--TTGGTGAATTNCAGCATG-ACCGTAGCTCTCTCGCTTGTAGCGA-ATCTCT--TAAN---TCGGTCATGCCAACGG-ACTGGGC-GC-G-AC-TCTCAAT---GGGACCAATA-TCGGCAGTAG-AA--CCACCTCGACT---ATTTCAAGAAGCCAATAACAGGCAATTACCCAACTCTGT--CACAAAAGCCAAT-GCCCGGC--GTTGGAGCCACTATTTCGNGAGAGCCAATGNNGGCTTTGGNTGAATATCTGAACAGCCGATTGCAGNNTTAGTATACTAGAGAATATCGATTTCNTCCGATGGCAGGCGTTGGGACGGTACGACGTCATCCAATGCAGCATTTTTATCTTCCTGCAGGCATTGNCTATACTATAAAGCCTGACTCAATGCAGGNATTGGNCCANTNNTGGCGTCGTCCAA---TGCAGG-CA---TTGGGCGA-------CTAC--AACT----GATTCCAATGC-AGGCATTGGGCCA--GTTATGG-GTCG-TCC--C--GCGNC-TT-TCG-----TA--AACT-GATTT--ATG-CGGGCGATTGG--CC-GA--TATGGC-GTCGT-C--AATG-C-GGC-ATT-GGTCTACT--AAAA--TGGATTCAATGCA--GGCATTGGGAC-GA-CTATGGCGTGTCGT-CCAATGCAGGCATTGGGCGACTGCAAACCTGAATTCAAATGCAGNCATTGGNCNAGTATGCGTCTTCCCAATGCAGGCAATGGTTGACTAACAAACTGATTCAATGCAGGCATTTGGAGCAGTATGGCGTTNTCGAATGCAGGGCGTTGGGGCGACTGGCGNGAACTGATTNAGATNCAGGCATNGGACCANTGTGCGTCGTCCAAATGCTTGCATTGAGCGANTATACNTACNGANCCAAACTGNNGNCATTGGNACCAGTNTGGGCCCCGGGTGTGTCCAATGCNNGCATTCGAGCGGCTTGACTACAANTGATCTAATGCNNGCATCTGAACAGTATGGGTCGTCCAATGCTGCTATTGAAAGCGATACAAACTGTTTATGCANGNNTTNGGNNCANTNTGGCGTCNTCCAATGCAATGCATTCGGGCGNACTNTGACGTNATCCAACGCAAGGCAATTGGNNCATNNTGGCGTCGTNCAATTGCNNGCATTANGGCGAACTATAAANTGATTCAATG--ACAGGC---ATTGGA-CAGTAT--GGGCGTCGTCCAATGCAGGCATT-G-GCGAC-GTACAAA--CTGATTCAAT-GCAGGCATTGGACNAGTATGGC-GTCGTCCAATGCAGGCATTGGG--AG--TAACAA-----TGAT-----------------ATTC--AATGCAGGC---ATTGGCCGCGTATGGCGCCTT-----G--------CCAATG-CAGGCACTGGTTGAACT-ACGAAC-TGATTCAATGCAGGCATTGGAAC--C-AGT--AT-GGCGTCATTTAATGCTAGCATTG----G-NTG--GCTATGAANTGGTCCA--------ATG-CAGGCATTGGATC-AC-TT----GANAGTC-G-NC-GGTGCGGGCATTGACA
gi|1 : ACTCTGAACCTAAATATTT--TTTT-GTC---TCA-A--T-ATTTTTT-CATAATAT-TGATC-CAT-TGTATTAA--------AGATATTTGAAATGGA--TAT-------TGACTTTTACACTCTCAAAA-GATAAA-A----AC--G-GAGTTAAT-TTTGATCAT-CA-A-ATT---GTTGTTTT---AATCA--TA-TATGAGT--TATCCAGATTTAATAAAAAGGATTT-GGTTTC--A-TCTA-TGTAT-TTAACAAAAATGGGTCGGCGCAA-AGTTGGTATGG-AAACTCTAATGC-ACTGTTGGATTATATAATTG-GTTGCAACTTTTTATC-CA-TTTT----GCAATT-TCTTTT--AAAAACT-AATTACAA----G-GGCT--CTTGAAATT-GTTAATA-TATG-TTT----TTGCGAAATGGAAA-CCGAATAAT---AAT-TATATTC-ATA-GCAT-GATT-T-ACATGAAG-AA--TTGAATGA--GTTATGGAATGCA-GCAACCCAC-TATCGACGAAAAGA--AATACT-GCCATGG--CA--T-TTTTGCAAAA-AATGGACAATA-TAGCGAAATCGTTTCAATTTTTATTGCCAAT-CAGACATT-TA-AACTAT---TAT--TTGATGAATACCAGCAT--ACCGTAGCTTTCGCGCTTGTAACGA-ATCTTTAGTAAGAATTCAATCA---CAGC----CTGGA--AT-G-AC-TTTCAAT---GA---CAATA-GTGGCAGTAG-AATACCACTCAGAAT---ATTTCAAGAA-CCAATAACAAACA-TTACCCCACTCTGT--CACAAAAGC--AT-GCCCGGC--GTTGGAGCCACTATTTCGC---AGCCAATGGAGGCTTTGGGTGAATA-CTGAACAACCAAT-GCAGCGTTAGTATACTAGA-AATAT-GATTTCATCAGATGGCAGGTGTTGGG--GGT-CGACATCATCCAATGTAGCATTTTTATCTTCCTGCAGGCATTGTCTATACTATAAA--CTGA-TCAATGCAGGCATTGGACCAGTCCTGGTGTCGTCCAA---TGCAGG-TAGGATTGAGCGA-------CTAC--AACT----GATTCCAATGC-ATGCATTGGACCA--GTTATGG-GTCGGTCC--CAAGCGAC------G-----TA--AACT-GATTTCCATG-CAGGCAATTGGAACC-AA--CAAGGC-GTCGT-CGAAATG-C-G-C--TT-GAGCGACT--AAAAAATGGATTCAATGCAACGGCATTGGGAC-GAGTTATGGCGTGTCGT-CCAATGCAGGTAT-GGGCGAGTACAAACCTGA-TTCAAATGCAGCCATTGGCCGAGTATGCGTCTTCCCAATGCAGGCAATGGTTGACTAACAAACTGATTCAATGCAGGCATTTGGAGCAGTATGG-GTTGTCGAATGCAGGGCATTGGGGCGACTGGTGTAAACTGATTGAAATGCAGGCATTGGACCAGTATGCGTCGTCCAAATGCTTGCATTGAGCGACTATACATACTGATTCAA--TGCAGGCATTGGAACCAGTATGGGCCCCGGGTGTGTCCAATGCAGGCATTC-AGCG----GACTACAACT-ATTTAATGCAGGCAT-TGAACAGTATGGGTCGTCCAATGCTGCTATTGAAAGCGATACAAACTGTTTATGTAGGATTTGGGACCAGTATGGCGTCGTCCA--GCAATGCATTCAAACGAACTATAAC-TGATTCAATGCAAGGC--TTGGACCATAATGGCGTCGTTCAATTGCTTGCATTAGAGCGAACAACAAAA-GATTCAATGAAAAAGGC---ATTGGA-CAGTATGGGGGCGTCGTCCAATGCAGGCATT-G-GCGACAGTA-AAA--CGGATTCCAT-GCAAGCATTGGCCTAGTATGACGGTCGTCCAATGCAGGCATGGGG--AG--TAACAA-----TGAT-----------------ATTCAAAATGCA-GC---ATTGGCCGTGTATGGCGCCT---------------CTAATG-CAGGCA-TAGTTGAAAT-ACAAACATGATTC-ATGCAGACATTAGAACCAC-AGT--ATGGGCGT-ATTT-ATACTAGCATTG----GCTTG--GCTATGAAATGAT-TA--------ATGCCAGGCA-TGGATC-AC-TTATAGAACAGTT-G-AA-GGGGAGGGCATTGACA
gi|10 : GAG-GAATATATCTACGAAACTAAACTGGCGCCATTGGCAC---TTTG------AGGTG-GTCC-ATGCCTGCATT-GAGCGGCTTGACTA-AAGTGATC--ATGCCTGCATCTGAA
gi|11 : TTGGCCCATTGTTGGCGTCGTCCAATTTTCTAGGCCA---TTGGCCGAATTCCATTTACTAAACTTGAAAATTTCAATACTAGGCATTTGGTCAATGTTATG--------CC--T--GCGCT-TT-TCA-----TATTAACTCAATTT---TG-CAGGCATTTGG--CCTGT--TATGGT-GTCAT-C--tctttatatcaatcaacagaattgcttttttgctcatcaaaaataaaaccgactaatttcttagtgttcattagagcattatgaattgtaataaaaatgag
gi|12 : ttcaatttgaatggctacA-A--T-ATTTT------AGTTT-AGATCTAAA-TGTTTTGA---------GTGATTTTAAATGAAA-TAT-------TGGCTTTTAC--TTTCAAAATGATAAA-A----AC--T-GAGTTAAT-TT--ATCAT-AA-G-A-----GTTGTTTT-----TCA--CA-CATGttataccctacatcagttgggct
gi|13 : atcactcaaaacattaagatcttataacttggacaatCTCTGAACT--ATTTTCT--TTTT-GTC----CA-AATT-ATTTTTT-CATAATATTCGATC-AAT--GTATTAA---------GAGATTTGAAAAGGAA-TAT-------TGACTTTT--ACTCTCAAAATGATAAA-A----ACTAGTAAGTTAAT-TT---------G-A-GTT---GT--TTTT---AAT----CA-TATGAGT--TAcac
gi|15 : tgcgATGGCGTTTTCGAATGCA-GGCGTTG----AAC--GC-AGAACTGATTCAGATTC-GACATAAGACCACTGTG
gi|16 : tggATG-CAGGCGCTGGTCGA-CT-ATGAAC-TGATTCACTGCAGGCATTGG
gi|17 : ccCTTTTAC--TCTCGAAATGATAAA-A----AC--T-GAGTTGAT-TT--ATCAT-AAGA-GTT---Ggcg
gi|2 : ACTCTGAATT--AA-ATTT--TTTT-GTCAAATTA-T--T-TTTTTTT-TATATTAA-CAATC-AAT-GGTATTAAT-------AGA-ATTTGAA-TGGAA-TATCATGTATTGACTTTC-TACTCTCAA--TGATAAATA----AC--G-AAGT--AT-TT--ATCAT-AA-A-GT-------GTTTT---AATCAATCAATGTG-GT--TATC-AGATT----GAAG-GAATTT-GGTTTA--A-TCTA-TGTAT-T-CACAAAAATGG-TCGG-G-AACAGTTGGTATGG-AAACGTCAATGT-ACTGTTG-ATCATA--ATTG-TTTGCCACTGTTCAT--CA-TTTTGGCCGCAATTAT-TTTT--AA--ACT-AATTACAT----GTG-CG--CTTGAAATTCG--TATG-TATGTTTT----TTGCGTAATGGAAA-TCCGATCAT---AAT-TTAACACGATA-TCATCGATT-TAATATG-AG-GA--TTGAATGA--CTTA-GCAATGCACGCGACCAACTTAATA-TGAAA-AATGAATGC-TGCCATGGG-TATTT-TTTCGGCAAAGAA-TTACAATACTAAGAAAATCG-TTCA--TTTTAACGTCAATGCAGA-AAT-T-TAACTAT---TTT--TT-GTCAATTACAGCATG-ATCGT-GCT---TCGCTTGTAGAGA-ATCTCT--TCTC---TCGGTCATGCCAACAG-ACTGGGTGGC-G-ACATCTC-AT---TGGACCAATA-T-GGCAGTAGCAA--CCACCTCGACT---ATTTCAAGAAGCCAATATGAGGC-ATTA-CCAACTCTGT--CAC--AAGCCAATCGCAGGCC--ATTGGA-CCAC-ATTTCAAGAGAG-CAATGCTG--TTTGGTTGAATATCTGAACAGCCGATTGCAGGTTTAG-------GAGAATATCAATTTCTTTCAAT-GCAGGCGTTGGGAC---ACAA-GTCATCCAATGC--CA-----------------GCATTGGTTATA-TATAAAGCTTGACTCAATGC-GGAATTGGGCCCATTATGGCGGCGTCC-A---TG-AGG-CA---TT-GGCGAT------CTAC--AACT----GATTCATATGCAAGGCATTGGG-CA--G--ATGGCGTCG-TCCAAT--GCGGCATTGTCAGCTGTTA--AACT-GATTC--ATGACGGGCGATTGG--CC-AAGTTTTGGCGGTCGTAC--AATG-CAGGCAATT-GGTCTACT--TAAC--T-GATTCAATGCA--GGCATTGGGCCTG---TATGGCAT-CCGTCCCAATGCAGGCATTGGGCGACTGTAAA-CTGAATTC-AATGCAGGCATTGGGCCAGTATGCGc
gi|3 : cTATTTCATTTC-GCA---TTA-G--T-GCTTGCTGCATTGCAT-CGATC-A-T-TATATTTA--------AGATATTTGAAATGGAACTAT-------GTACTTTTAC--TCCCAAAATGATAAA-A----ACT-G-AAGTTAATCTT--ATTAT-AA-AAGTT-----TGTTTT---AATCA--CT-TATGAGTATTATC-AAATT----GAAAAGGATTTTGGTTTA--AATCTAATGTAC-TTCACAAAAATGG-TCAGCG-AA-AGTTGGTATGGAAAACATCAATGCGATCGTTG-ATTATA--ATTGTTTTGCAACTTTTCATCGCATTTTT----GCAATT-C-TTTT--ATTTGCTAAATGACACCAGTG-G-CGCACTTGAAATT-T--AGTATTATG-TTT----TTGCGTAATGGACATTCCGATAGTATGAATATATGTAC-ATATACAT-GATT-T-AAATGAAG-GAATTTGAATGACCGCTTTGCAATGCA-GCAG--CAC-TAATG-CGAAT-GA--AATACTTGCGATGGGTCA--TGTTTCGCAAAAGAATTTACAA-A-TAGCAAAATCTTTTCA---TTTAAAGCCAATGCAGA-TTTATATAACTATATCTTTGATTGGTGGCTTTAAGCATGTACTATATCTCTCTC--------CGAGATC------AAA-------CCATGC--ACGATACT-GGC-GCTGTACTTCTCAATGCCGGGATCAATACTCGGCAGTAG--A--CCA-CTCGACTTAAATTTCAA-AAGCCAACTACAGGCAATTACCCAACTCTGTCCCACAAAAGCCAAT-G-CTGGCTTATTGGcgcgtaataatgc
gi|4 : g-CAGTAT--GG-CGTCGTCCAATGCAGGCATTCG-GCGAC--TACAAA--CTGATTCAAT-GCAGGCATTGGACCAGTATGGC-GTCATCCAATGCAGACATTGGG--CGACTAA-AC-----TGATCGGCCGAGTATGGCGTAATTC--AATGCAGGC---ATTGGCCGAGTATGGAGTCGT--------------CCAATG-CAATCACTGGGTG-ACT-ATGAAC-TGATTCAATGCAGGCATCGT--C--CGACT--AT-GAAGTGATTTAATGTAGGCATTAATTTG-GTGA-ACTATAGAGTCGTCCA--------ATG-CAGGCACT-GACCGAC-TC----GAAAGTC-GTCC-AGTGCAGGCATTTACA
gi|4 : ggccTC-----G--------TCAATGTCAGGATTTGGTTTA-CT-TTAAAA-TG--TAAATGCCTGCACTGGA-C--G-ACT--TT-CGAGTCGGTCAGTGCCTGCATTG----G-ACG--ACTCT---ATAGTTCACCAAATTAATG-CCTACATTAAATC-AC-TT----CATAGTCGG-AC-GATGCCTGCATTGAttttaaagtaaaccaaatcctgacattgacgaactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|4 : ggcccagtatggcgtcgtccaatgcaggcattcggcgactacaaactgattcaatgcaggcattggaccagtatggcgtcatccaatgcagacattgggcgactaaactgatcggccgagtatggcgtaattcaatgcaggcattggccgagtatggagtcgtccaatgcaatcactgggtgactatgaactgatTCGT-C--AATGTC-AGG-ATTTGGTTTACTTTAAAA--TGTA---AATGCC--TGCACTGG-AC-GA-CTTT--CGAGTCGG-TCAGTGCCTGCATTGGACGACTactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|5 : ggcccagtatggcgtcgtccaatgcaggcattcggcgactacaaactgattcaatgcaggcattggaccagtatggcgtcatccaatgcagacattgggcgactaaactgatcggccgagtatggcgtaattcaatgcaggcattggccgagtatggagtcgtccaatgcaatcactgggtgactatgaactgattcaatgcaggcatcgtccgactatgaagtgatttaatgtaggcattaatttggtgaactatagTGCATGTATTTGGCATATTCTGACGTCCTCCAATGCA-TGTATT-GGGCATATTCTGACGTCATCCAACGC-AGGTAATTGGCATATTCTGACGTCATGCAA-TGCAGGTATT-TGGCAAATTCTAAAGTCATTCAAT---ACAGACGTTACTAGA-C--TTT--GAA-GTCGTTCAATG--G--ATT-T-GC-----TTCAGAATCTG--TTAAT-GCCCGCATTGGATAACTTTAGA-GTAAAACAATGCATGCACTGAG--AA--AAAGAA-----Tactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|6 : ACTATAAACTGATTTAATG---CAGGC---ATTGGACCAGTAT---GGCGTCATCCAATGCAGACATT-G-GC--C-G-----A--CT-AT---ATAGCAGGCAATGGCCGAATATGGT-GTCATTCAATGCAGGCATTG---------AACAACGCTTTGAT-----------------ACTC----TGCTGA----ATT-GCAATGTAT----CTTTCAACAG--------CCAATG-CATGCACTGGATGAAcgaacgacgcccgttctaggagaacattatantagagtaaaacaatgcatgcactgagaaaaatagtcaaacgacgcccgttctaggagaacattatgtgtacttgttccagcatttagacattaagacaaaaatgtatagtctaagttaaagtctaagttaattgcattcaggtacacaagtaaaatgttttcagcattttctcaaagtacattcaaatattcttaacttgaaaatactcttctaaaaaatacgctgatttgattttttttttttcaatttgctaaaacgtccattgaaattgctgaaaattttcgctagaattatgacagtgcgctagtgctttgcgatcgtaacaatttataacacataccgaaagttcgttattcaatttcaaaaatggat
gi|7 : tgAGTAT--GG-CGTCGTTCAATGCTTGCATA-GAGCGAC--TACAAA--ATGATTCAAT-GAAGGCATTGGACCAGTATGGC-GTCGTCCAATGCAGGCATTGGGCGAG--TA-CAAAT---TGAT-------------------TC--AATGCAGCC---ATTGGCCGTGTATGGCGTCCT--------------CTAATG-CAGGCATTAGTTGAA-T-ACAAAC-TGATTCAATGCAGACATTAGA-C--C-AGT--AT-GGCGTCATTTACTACTAGCATTG----G-CTG--GCTATGAACTGATTCA--------ATG-CAGGCATTGGATC-ACTTT----GTCAGGA-G-CC-AATGCAGGCATTGtatctcatattggcctactttctcaggagccacatgcaattgcatgcctcaaataaacgtgtaccttaggacaatgcagacagtagtttacttttttcagagtcaatgaaagtattgatagaagcaaagctgagatagaatgacctgacatttgaggtctatgccttcttcagagtcattgcaagcactgaacttcttcctatgtgcagttagttcaagcattgcatgaccttctatctacagccaaagcagacggattta
gi|7 : G--AG--GAA-AA-----T-AT-----------------ATCT--AACG-AAACTAAACTGGCCGCA-ATGGCACTTT-----GAGAGTAGTCCAATG-CCTGCATTGGCTC--CTGACAAAG-TGATCCAATGCCTGCATTG-AAT--C-AGTTCAT-AGC--CAGCCAATGCTAGTAGTA----A-ATGACGCCAT--ACTGGTCTA--------ATG-TCTGCATTGAATC-AG-TT----TGTATTC-A-ACTAATGCCTGCATTgactactctcaaagtgccattgcggccagtttagtttcgttagatatattttcctcttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|8 : agtatggcgtcgttcaatgcttgcatagagcgactacaaaatgattcaatgaaggcattggaccagtatggcgtcgtccaatgcaggcattgggcgagtacaaattgattcaatgcagccattggccgtgtatggcgtcctctAA-TAT-------TGGCTTT-A-ACTCTCAAAATGATAAA-AGAAAAT--T-TAGTTATT-TT--ATCATGAA-A-GTT---GTT--TTT---AATTA--CA-C--GGGT---A--CATAAT----GTAAA---TAT-GGTTTGCCA-TATA-CACATATTCACTGAAATGA-CCAGCG-AA-AGTTGGCATGG-AAACATCAACGT-ACTGTTG-ATAAT---ATTT-TTAACAGCTTATAA-C-CA-GTTT----GCAATG-T-TTTTGCGAATAAT-AATT----------G-CG--TTTGAAATC-G--GG-A-TATA-TTTGCCGTAGCGTAAT-TAAA-TCCGTTCAC---AAT-TA-ACAC-CGA-ATGT-GATTAA-ACATGAGGAAA--TTGAATGA--GTT-TACAATACA-CCGA-CCAC-TAttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|9 : aTCGGAACT--AATTTTT--TTTTTGT----TCATA--TCATTTTTT-TATAATATACAACC-AATGTTTCTCAATACTATTGAGAGATTTGCAATGGAA-TAT-------TGACTTTTAC--TCTCAAAATGATAAA-A----AC--T-GAGTTAAT-TT--ATCAT-AA-A-GTTTTGGTTTTTTTTTAAAT----TA-TATAAGT--TAT-CAGATT----G-AAAGGATAT-GGTTTA--A-TCTA-TGTA--TTCACAAAAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GCAAGTTGCCTCAGAGTTATTTGCAATCGTTATAACAATAAGACATTTATTATAAATAATGTGTTCAAATAAAGTAGTTTTTGGATAATATTAAAAAATCAGGATTGGGCATAAAATATTTTGTCACACT
Unaligned ( gi|18 ): GGTCTCTTCTAAATCTGTTAACGATATGGTCAAGGTATTTAGGGAC
Alignments
lowQualScore : 11 11 22222222222 1 333333333 1111111 2222 1111 1111 11111111 111 1111 111 1111 11 11 1 1 1 1 1 1 111 1 111 1 2222 111 111111 1 3333333 1 11 222222222 1 2222 1 111 1 1 11 1 111 1 11 11 11 1 1 1 1 1 11 11 22222222 1 222 22222222 222 11 22 1 1 777777777777777777777777777777777777777777777 22222222 222 33333 222 11 11 1 111 1 1 2222 1 11 1 1 3333333 1 1 1 555555 1 11 66666666666666666 1 11 1 1 222222 1 222 5555555 11 2222 2 1 11 777777777777777777777777777777777777 1 222 1 11 33333 1 1 11 33333333 1 11 11 11 22222 1 1 1 1 1 1 2222222222222 1 1 11 222 222222 1 1 33 2222 1 1 11 1 11 1 1 1 1 11 1 11 3333 222 1 11111 111 33333333 11 7777777777777777777777777777777777777777 111 111111 555555555555555 1111 2222222 11 111111111111 1 22222 22222222 1111
lowQualScore : 33 22 11 8 00000000000 6 1 6 0 3 6 99 888888888 6 5 8888888 2222 5 0000 9999 5 66 5 5 5 11111111 000 2222 5 0 1 99 555 7777 6 0 1 8 11 8 8 11 0 0 2 0 0 0 4 0 0 1 777 0 0 555 0 1111 444 999999 0 3 4444444 0 33 777777777 0 1111 2 0 1 777 0 9 0 11 2 0 777 0 3 0 33 33 33 0 5 0 0 3 3 88 44 99999999 6 7 7 3 0 7 555 3 6 22222222 333 88 6 1 00 7 2 6 3 3 777777777777777777777777777777777777777777777 7 66666666 444 00000 6 333 6 6 44 6 88 7 6 3 888 999 5 5 1111 5 22 77 1 5 5 22 3333333 5 5 1 2 5 444444 5 88 00000000000000000 1 5 77 5 5 1 1 1 22 7 444444 3 333 6 6666666 88 8888 6 2 88 7 444444444444444444444444444444444444 3 555 3 0 0 88 22222 3 0 33 77777777 3 88 88 6 7 88 6 77777 6 6 3 7 5 5 5 1 1 1 5 1 5 3333333333333 1 1 5 1 1 5 1 1 1 1 88 22 1 1 000 1 777777 5 5 22 00 3333 5 1 5 88 22 5 1 22 1 22 1 1 1 88 5 5 1 1 5 1 5 88 22 22 1 5 22 66 88 2222 333 0 0 77777 1 3 111 55555555 11 0 0 0 8 0 1 8 1111111111111111111111111111111111111111 111 888888 4 0 333333333333333 5 4 0 3333 6 0 6 3 3333333 11 8 5 0 0 888888888888 3 1 00000 8 0 3 3 8 44444444 8 1 1111 1
lowQualScore : .. .. .. . ........... . . . . . . .. ......... . . ....... .... . .... .... . .. . . . ........ ... .... . . . .. ... .... . . . . .. . . .. . . . . . . . . . . ... . . ... . .... ... ...... . . ....... . .. ......... . .... . . . ... . . . .. . . ... . . . .. .. .. . . . . . . .. .. ........ . . . . . . ... . . ........ ... .. . . .. . . . . . ............................................. . ........ ... ..... . ... . . .. . .. . . . ... ... . . .... . .. .. . . . .. ....... . . . . . ...... . .. ................. . . .. . . . . . .. . ...... . ... . ....... .. .... . . .. . .................................... . ... . . . .. ..... . . .. ........ . .. .. . . .. . ..... . . . . . . . . . . . . . ............. . . . . . . . . . . .. .. . . ... . ...... . . .. .. .... . . . .. .. . . .. . .. . . . .. . . . . . . . .. .. .. . . .. .. .. .... ... . . ..... . . ... ........ .. . . . . . . . ........................................ ... ...... . . ............... . . . .... . . . . ....... .. . . . . ............ . . ..... . . . . . ........ . . .... .
lowQualScore : 88 22 00 0 99999999999 7 7 7 3 3 7 88 222222222 7 7 6666666 6666 0 6666 4444 0 99 0 0 0 88888888 000 3333 7 1 7 22 888 0000 0 8 4 0 00 0 0 88 8 0 5 0 0 0 2 0 0 2 000 0 2 888 0 2222 888 222222 0 2 0000000 0 88 222222222 0 2222 5 0 0 555 0 8 0 22 0 0 555 2 2 0 88 88 00 0 0 0 7 3 3 33 77 00000000 7 3 3 3 7 3 777 7 7 77777777 333 33 7 0 00 3 0 7 7 3 333333333333333333333333333333333333333333333 3 33333333 333 00000 7 333 7 7 77 7 33 3 7 3 777 000 0 5 5555 0 00 55 0 5 5 00 0000000 0 0 0 5 0 000000 0 00 55555555555555555 0 0 55 0 5 0 0 0 00 3 777777 3 333 7 7777777 33 3333 7 0 33 3 777777777777777777777777777777777777 3 777 3 7 7 33 00000 3 0 88 77777777 3 33 33 7 3 33 7 77777 7 7 3 3 0 5 5 0 0 0 0 0 0 5555555555555 0 0 5 0 0 0 0 0 0 0 00 00 0 0 555 0 555555 5 5 00 00 5555 0 0 0 55 00 0 0 00 0 00 0 0 0 55 5 0 0 0 0 0 5 55 00 00 0 5 00 55 33 3333 333 0 8 44444 0 2 000 44444444 00 8 8 6 0 6 0 0 3333333333333333333333333333333333333333 888 666666 6 8 333333333333333 7 0 3 1111 7 7 7 7 4444444 00 0 0 6 8 222222222222 2 0 22222 0 6 8 2 0 44444444 0 0 4444 0
consensus : ACTCTGAACT--AATATTT--TTTT-GTC---TCA-A--T-ATTTTTT-CATAATAT-CGATC-AAT-TGTATTAA--------AGAGATTTGAAATGGAA-TAT-------TGACTTTTACACTCTCAAAATGATAAA-A----AC--G-GAGTTAAT-TT--ATCAT-AA-A-GTT---GTTGTTTT---AATCA--CA-TATGAGT--TATCCAGATT----GAAAAGGATTT-GGTTTA--A-TCTA-TGTAT-TTCACAAAAATGG-TCGGCG-AA-AGTTGGTATGG-AAACGTCAATGC-ACTGTTG-ATTATA--ATTG-TTTGCAACTTTTCATC-CA-TTTT----GCAATT-T-TTTT--AAATACT-AATTACAC----G-G-CG--CTTGAAATT-G--AGTA-TATG-TTT----TTGCGTAATGGAAA-TCCGATNAT---AAT-TATACAC-ATA-ACGT-GATT-T-ACATGAAG-GA--TTGAATGA--GTTATGCAATGCA-GCGACCCAC-TAACG-CGAAA-GA--AATACTTGCCATGGG-CA--T-TTTCGCAAAAGAATTTACAATA-TAGCGAAATCGTTTCA--TTTTAACGCCAATGCAGA-ATT-TATAACTAT---TTT--TTGGTGAATTNCAGCATG-ACCGTAGCTCTCTCGCTTGTAGCGA-ATCTCT--TAAN---TCGGTCATGCCAACGG-ACTGGGC-GC-G-AC-TCTCAAT---GGGACCAATA-TCGGCAGTAG-AA--CCACCTCGACT---ATTTCAAGAAGCCAATAACAGGCAATTACCCAACTCTGT--CACAAAAGCCAAT-GCCCGGC--GTTGGAGCCACTATTTCGNGAGAGCCAATGNNGGCTTTGGNTGAATATCTGAACAGCCGATTGCAGNNTTAGTATACTAGAGAATATCGATTTCNTCCGATGGCAGGCGTTGGGACGGTACGACGTCATCCAATGCAGCATTTTTATCTTCCTGCAGGCATTGNCTATACTATAAAGCCTGACTCAATGCAGGNATTGGNCCANTNNTGGCGTCGTCCAA---TGCAGG-CA---TTGGGCGA-------CTAC--AACT----GATTCCAATGC-AGGCATTGGGCCA--GTTATGG-GTCG-TCC--C--GCGNC-TT-TCG-----TA--AACT-GATTT--ATG-CGGGCGATTGG--CC-GA--TATGGC-GTCGT-C--AATG-C-GGC-ATT-GGTCTACT--AAAA--TGGATTCAATGCA--GGCATTGGGAC-GA-CTATGGCGTGTCGT-CCAATGCAGGCATTGGGCGACTGCAAACCTGAATTCAAATGCAGNCATTGGNCNAGTATGCGTCTTCCCAATGCAGGCAATGGTTGACTAACAAACTGATTCAATGCAGGCATTTGGAGCAGTATGGCGTTNTCGAATGCAGGGCGTTGGGGCGACTGGCGNGAACTGATTNAGATNCAGGCATNGGACCANTGTGCGTCGTCCAAATGCTTGCATTGAGCGANTATACNTACNGANCCAAACTGNNGNCATTGGNACCAGTNTGGGCCCCGGGTGTGTCCAATGCNNGCATTCGAGCGGCTTGACTACAANTGATCTAATGCNNGCATCTGAACAGTATGGGTCGTCCAATGCTGCTATTGAAAGCGATACAAACTGTTTATGCANGNNTTNGGNNCANTNTGGCGTCNTCCAATGCAATGCATTCGGGCGNACTNTGACGTNATCCAACGCAAGGCAATTGGNNCATNNTGGCGTCGTNCAATTGCNNGCATTANGGCGAACTATAAANTGATTCAATG--ACAGGC---ATTGGA-CAGTAT--GGGCGTCGTCCAATGCAGGCATT-G-GCGAC-GTACAAA--CTGATTCAAT-GCAGGCATTGGACNAGTATGGC-GTCGTCCAATGCAGGCATTGG--GAG--TAACAA-----TGAT-----------------ATTC--AATGCAGGC---ATTGGCCGCGTATGGCGCCTT-----G--------CCAATG-CAGGCACTGGTTGAACT-ACGAAC-TGATTCAATGCAGGCATTGGAAC--C-AGT--AT-GGCGTCATTTAATGCTAGCATTG----GNTGA-G-CTATGAANTGATC----TAATG-CAGGCATTGGATC-ACTT----CG-CAGTC-GAC-GA-TGCNGGCATTGACA
Reference ( family-6305 ) : ACTCTGAACT--AATATTT--TTTT-GTC---TCA-A--T-ATTTTTT-CATAATAT-CGATC-AAT-TGTATTAA--------AGAGATTTGAAATGGAA-TAT-------TGACTTTTACACTCTCAAAATGATAAA-A----AC--G-GAGTTAAT-TT--ATCAT-AA-A-GTT---GTTGTTTT---AATCA--CA-TATGAGT--TATCCAGATT----GAAAAGGATTT-GGTTTA--A-TCTA-TGTAT-TTCACAAAAATGG-TCGGCG-AA-AGTTGGTATGG-AAACGTCAATGC-ACTGTTG-ATTATA--ATTG-TTTGCAACTTTTCATC-CA-TTTT----GCAATT-T-TTTT--AAATACT-AATTACAC----G-G-CG--CTTGAAATT-G--AGTA-TATG-TTT----TTGCGTAATGGAAA-TCCGATNAT---AAT-TATACAC-ATA-ACGT-GATT-T-ACATGAAG-GA--TTGAATGA--GTTATGCAATGCA-GCGACCCAC-TAACG-CGAAA-GA--AATACTTGCCATGGG-CA--T-TTTCGCAAAAGAATTTACAATA-TAGCGAAATCGTTTCA--TTTTAACGCCAATGCAGA-ATT-TATAACTAT---TTT--TTGGTGAATTNCAGCATG-ACCGTAGCTCTCTCGCTTGTAGCGA-ATCTCT--TAAN---TCGGTCATGCCAACGG-ACTGGGC-GC-G-AC-TCTCAAT---GGGACCAATA-TCGGCAGTAG-AA--CCACCTCGACT---ATTTCAAGAAGCCAATAACAGGCAATTACCCAACTCTGT--CACAAAAGCCAAT-GCCCGGC--GTTGGAGCCACTATTTCGNGAGAGCCAATGNNGGCTTTGGNTGAATATCTGAACAGCCGATTGCAGNNTTAGTATACTAGAGAATATCGATTTCNTCCGATGGCAGGCGTTGGGACGGTACGACGTCATCCAATGCAGCATTTTTATCTTCCTGCAGGCATTGNCTATACTATAAAGCCTGACTCAATGCAGGNATTGGNCCANTNNTGGCGTCGTCCAA---TGCAGG-CA---TTGGGCGA-------CTAC--AACT----GATTCCAATGC-AGGCATTGGGCCA--GTTATGG-GTCG-TCC--C--GCGNC-TT-TCG-----TA--AACT-GATTT--ATG-CGGGCGATTGG--CC-GA--TATGGC-GTCGT-C--AATG-C-GGC-ATT-GGTCTACT--AAAA--TGGATTCAATGCA--GGCATTGGGAC-GA-CTATGGCGTGTCGT-CCAATGCAGGCATTGGGCGACTGCAAACCTGAATTCAAATGCAGNCATTGGNCNAGTATGCGTCTTCCCAATGCAGGCAATGGTTGACTAACAAACTGATTCAATGCAGGCATTTGGAGCAGTATGGCGTTNTCGAATGCAGGGCGTTGGGGCGACTGGCGNGAACTGATTNAGATNCAGGCATNGGACCANTGTGCGTCGTCCAAATGCTTGCATTGAGCGANTATACNTACNGANCCAAACTGNNGNCATTGGNACCAGTNTGGGCCCCGGGTGTGTCCAATGCNNGCATTCGAGCGGCTTGACTACAANTGATCTAATGCNNGCATCTGAACAGTATGGGTCGTCCAATGCTGCTATTGAAAGCGATACAAACTGTTTATGCANGNNTTNGGNNCANTNTGGCGTCNTCCAATGCAATGCATTCGGGCGNACTNTGACGTNATCCAACGCAAGGCAATTGGNNCATNNTGGCGTCGTNCAATTGCNNGCATTANGGCGAACTATAAANTGATTCAATG--ACAGGC---ATTGGA-CAGTAT--GGGCGTCGTCCAATGCAGGCATT-G-GCGAC-GTACAAA--CTGATTCAAT-GCAGGCATTGGACNAGTATGGC-GTCGTCCAATGCAGGCATTGG--GAG--TAACAA-----TGAT-----------------ATTC--AATGCAGGC---ATTGGCCGCGTATGGCGCCTT-----G--------CCAATG-CAGGCACTGGTTGAACT-ACGAAC-TGATTCAATGCAGGCATTGGAAC--C-AGT--AT-GGCGTCATTTAATGCTAGCATTG----GNTGA-G-CTATGAANTGGTC----CAATG-CAGGCATTGGATC-ACTT----NA-CAGTC-GAC-GA-TGCNGGCATTGACA
gi|1 : ACTCTGAACCTAAATATTT--TTTT-GTC---TCA-A--T-ATTTTTT-CATAATAT-TGATC-CAT-TGTATTAA--------AGATATTTGAAATGGA--TAT-------TGACTTTTACACTCTCAAAA-GATAAA-A----AC--G-GAGTTAAT-TTTGATCAT-CA-A-ATT---GTTGTTTT---AATCA--TA-TATGAGT--TATCCAGATTTAATAAAAAGGATTT-GGTTTC--A-TCTA-TGTAT-TTAACAAAAATGGGTCGGCGCAA-AGTTGGTATGG-AAACTCTAATGC-ACTGTTGGATTATATAATTG-GTTGCAACTTTTTATC-CA-TTTT----GCAATT-TCTTTT--AAAAACT-AATTACAA----G-GGCT--CTTGAAATT-GTTAATA-TATG-TTT----TTGCGAAATGGAAA-CCGAATAAT---AAT-TATATTC-ATA-GCAT-GATT-T-ACATGAAG-AA--TTGAATGA--GTTATGGAATGCA-GCAACCCAC-TATCGACGAAAAGA--AATACT-GCCATGG--CA--T-TTTTGCAAAA-AATGGACAATA-TAGCGAAATCGTTTCAATTTTTATTGCCAAT-CAGACATT-TA-AACTAT---TAT--TTGATGAATACCAGCAT--ACCGTAGCTTTCGCGCTTGTAACGA-ATCTTTAGTAAGAATTCAATCA---CAGC----CTGGA--AT-G-AC-TTTCAAT---GA---CAATA-GTGGCAGTAG-AATACCACTCAGAAT---ATTTCAAGAA-CCAATAACAAACA-TTACCCCACTCTGT--CACAAAAGC--AT-GCCCGGC--GTTGGAGCCACTATTTCGC---AGCCAATGGAGGCTTTGGGTGAATA-CTGAACAACCAAT-GCAGCGTTAGTATACTAGA-AATAT-GATTTCATCAGATGGCAGGTGTTGGG--GGT-CGACATCATCCAATGTAGCATTTTTATCTTCCTGCAGGCATTGTCTATACTATAAA--CTGA-TCAATGCAGGCATTGGACCAGTCCTGGTGTCGTCCAA---TGCAGG-TAGGATTGAGCGA-------CTAC--AACT----GATTCCAATGC-ATGCATTGGACCA--GTTATGG-GTCGGTCC--CAAGCGAC------G-----TA--AACT-GATTTCCATG-CAGGCAATTGGAACC-AA--CAAGGC-GTCGT-CGAAATG-C-G-C--TT-GAGCGACT--AAAAAATGGATTCAATGCAACGGCATTGGGAC-GAGTTATGGCGTGTCGT-CCAATGCAGGTAT-GGGCGAGTACAAACCTGA-TTCAAATGCAGCCATTGGCCGAGTATGCGTCTTCCCAATGCAGGCAATGGTTGACTAACAAACTGATTCAATGCAGGCATTTGGAGCAGTATGG-GTTGTCGAATGCAGGGCATTGGGGCGACTGGTGTAAACTGATTGAAATGCAGGCATTGGACCAGTATGCGTCGTCCAAATGCTTGCATTGAGCGACTATACATACTGATTCAA--TGCAGGCATTGGAACCAGTATGGGCCCCGGGTGTGTCCAATGCAGGCATTC-AGCG----GACTACAACT-ATTTAATGCAGGCAT-TGAACAGTATGGGTCGTCCAATGCTGCTATTGAAAGCGATACAAACTGTTTATGTAGGATTTGGGACCAGTATGGCGTCGTCCA--GCAATGCATTCAAACGAACTATAAC-TGATTCAATGCAAGGC--TTGGACCATAATGGCGTCGTTCAATTGCTTGCATTAGAGCGAACAACAAAA-GATTCAATGAAAAAGGC---ATTGGA-CAGTATGGGGGCGTCGTCCAATGCAGGCATT-G-GCGACAGTA-AAA--CGGATTCCAT-GCAAGCATTGGCCTAGTATGACGGTCGTCCAATGCAGGCATGGG--GAG--TAACAA-----TGAT-----------------ATTCAAAATGCA-GC---ATTGGCCGTGTATGGCGCCT---------------CTAATG-CAGGCA-TAGTTGAAAT-ACAAACATGATTC-ATGCAGACATTAGAACCAC-AGT--ATGGGCGT-ATTT-ATACTAGCATTG----GCTTG-G-CTATGAAATGAT-----TAATGCCAGGCA-TGGATC-ACTTATAGAA-CAGTT-GAA-GG-GGAGGGCATTGACA
gi|10 : GAG-GAATATATCTACGAAACTAAACTGGCGCCATTGGCAC---TTTG------AGGTG-GTCC-ATGCCTGCATT-GAGCGGCTTGACTA-AAGTGATC--ATGCCTGCATCTGAA
gi|11 : TTGGCCCATTGTTGGCGTCGTCCAATTTTCTAGGCCA---TTGGCCGAATTCCATTTACTAAACTTGAAAATTTCAATACTAGGCATTTGGTCAATGTTATG--------CC--T--GCGCT-TT-TCA-----TATTAACTCAATTT---TG-CAGGCATTTGG--CCTGT--TATGGT-GTCAT-C--tctttatatcaatcaacagaattgcttttttgctcatcaaaaataaaaccgactaatttcttagtgttcattagagcattatgaattgtaataaaaatgag
gi|12 : ttcaatttgaatggctacA-A--T-ATTTT------AGTTT-AGATCTAAA-TGTTTTGA---------GTGATTTTAAATGAAA-TAT-------TGGCTTTTAC--TTTCAAAATGATAAA-A----AC--T-GAGTTAAT-TT--ATCAT-AA-G-A-----GTTGTTTT-----TCA--CA-CATGttataccctacatcagttgggct
gi|13 : atcactcaaaacattaagatcttataacttggacaatCTCTGAACT--ATTTTCT--TTTT-GTC----CA-AATT-ATTTTTT-CATAATATTCGATC-AAT--GTATTAA---------GAGATTTGAAAAGGAA-TAT-------TGACTTTT--ACTCTCAAAATGATAAA-A----ACTAGTAAGTTAAT-TT---------G-A-GTT---GT--TTTT---AAT----CA-TATGAGT--TAcac
gi|15 : tgcgATGGCGTTTTCGAATGCA-GGCGTTG----AAC--GC-AGAACTGATTCAGATTC-GACATAAGACCACTGTG
gi|16 : tggATG-CAGGCGCTGGTCGA-CT-ATGAAC-TGATTCACTGCAGGCATTGG
gi|17 : ccCTTTTAC--TCTCGAAATGATAAA-A----AC--T-GAGTTGAT-TT--ATCAT-AAGA-GTT---Ggcg
gi|2 : ACTCTGAATT--AA-ATTT--TTTT-GTCAAATTA-T--T-TTTTTTT-TATATTAA-CAATC-AAT-GGTATTAAT-------AGA-ATTTGAA-TGGAA-TATCATGTATTGACTTTC-TACTCTCAA--TGATAAATA----AC--G-AAGT--AT-TT--ATCAT-AA-A-GT-------GTTTT---AATCAATCAATGTG-GT--TATC-AGATT----GAAG-GAATTT-GGTTTA--A-TCTA-TGTAT-T-CACAAAAATGG-TCGG-G-AACAGTTGGTATGG-AAACGTCAATGT-ACTGTTG-ATCATA--ATTG-TTTGCCACTGTTCAT--CA-TTTTGGCCGCAATTAT-TTTT--AA--ACT-AATTACAT----GTG-CG--CTTGAAATTCG--TATG-TATGTTTT----TTGCGTAATGGAAA-TCCGATCAT---AAT-TTAACACGATA-TCATCGATT-TAATATG-AG-GA--TTGAATGA--CTTA-GCAATGCACGCGACCAACTTAATA-TGAAA-AATGAATGC-TGCCATGGG-TATTT-TTTCGGCAAAGAA-TTACAATACTAAGAAAATCG-TTCA--TTTTAACGTCAATGCAGA-AAT-T-TAACTAT---TTT--TT-GTCAATTACAGCATG-ATCGT-GCT---TCGCTTGTAGAGA-ATCTCT--TCTC---TCGGTCATGCCAACAG-ACTGGGTGGC-G-ACATCTC-AT---TGGACCAATA-T-GGCAGTAGCAA--CCACCTCGACT---ATTTCAAGAAGCCAATATGAGGC-ATTA-CCAACTCTGT--CAC--AAGCCAATCGCAGGCC--ATTGGA-CCAC-ATTTCAAGAGAG-CAATGCTG--TTTGGTTGAATATCTGAACAGCCGATTGCAGGTTTAG-------GAGAATATCAATTTCTTTCAAT-GCAGGCGTTGGGAC---ACAA-GTCATCCAATGC--CA-----------------GCATTGGTTATA-TATAAAGCTTGACTCAATGC-GGAATTGGGCCCATTATGGCGGCGTCC-A---TG-AGG-CA---TT-GGCGAT------CTAC--AACT----GATTCATATGCAAGGCATTGGG-CA--G--ATGGCGTCG-TCCAAT--GCGGCATTGTCAGCTGTTA--AACT-GATTC--ATGACGGGCGATTGG--CC-AAGTTTTGGCGGTCGTAC--AATG-CAGGCAATT-GGTCTACT--TAAC--T-GATTCAATGCA--GGCATTGGGCCTG---TATGGCAT-CCGTCCCAATGCAGGCATTGGGCGACTGTAAA-CTGAATTC-AATGCAGGCATTGGGCCAGTATGCGc
gi|3 : cTATTTCATTTC-GCA---TTA-G--T-GCTTGCTGCATTGCAT-CGATC-A-T-TATATTTA--------AGATATTTGAAATGGAACTAT-------GTACTTTTAC--TCCCAAAATGATAAA-A----ACT-G-AAGTTAATCTT--ATTAT-AA-AAGTT-----TGTTTT---AATCA--CT-TATGAGTATTATC-AAATT----GAAAAGGATTTTGGTTTA--AATCTAATGTAC-TTCACAAAAATGG-TCAGCG-AA-AGTTGGTATGGAAAACATCAATGCGATCGTTG-ATTATA--ATTGTTTTGCAACTTTTCATCGCATTTTT----GCAATT-C-TTTT--ATTTGCTAAATGACACCAGTG-G-CGCACTTGAAATT-T--AGTATTATG-TTT----TTGCGTAATGGACATTCCGATAGTATGAATATATGTAC-ATATACAT-GATT-T-AAATGAAG-GAATTTGAATGACCGCTTTGCAATGCA-GCAG--CAC-TAATG-CGAAT-GA--AATACTTGCGATGGGTCA--TGTTTCGCAAAAGAATTTACAA-A-TAGCAAAATCTTTTCA---TTTAAAGCCAATGCAGA-TTTATATAACTATATCTTTGATTGGTGGCTTTAAGCATGTACTATATCTCTCTC--------CGAGATC------AAA-------CCATGC--ACGATACT-GGC-GCTGTACTTCTCAATGCCGGGATCAATACTCGGCAGTAG--A--CCA-CTCGACTTAAATTTCAA-AAGCCAACTACAGGCAATTACCCAACTCTGTCCCACAAAAGCCAAT-G-CTGGCTTATTGGcgcgtaataatgc
gi|4 : g-CAGTAT--GG-CGTCGTCCAATGCAGGCATTCG-GCGAC--TACAAA--CTGATTCAAT-GCAGGCATTGGACCAGTATGGC-GTCATCCAATGCAGACATTGG--GCGACTAA-AC-----TGATCGGCCGAGTATGGCGTAATTC--AATGCAGGC---ATTGGCCGAGTATGGAGTCGT--------------CCAATG-CAATCACTGGGTG-ACT-ATGAAC-TGATTCAATGCAGGCATCGT--C--CGACT--AT-GAAGTGATTTAATGTAGGCATTAATTTGGTGA-A-CTATAGAGTCGTC----CAATG-CAGGCACT-GACCGACTC----GA-AAGTC-GTC-CAGTGCAGGCATTTACA
gi|4 : ggccTC-----G--------TCAATGTCAGGATTTGGTTTA-CT-TTAAAA-TG--TAAATGCCTGCACTGGA-C--G-ACT--TT-CGAGTCGGTCAGTGCCTGCATTG----GACGA-CTCTAT-AGTTCACCAAATTAATG-CCTACATTAAATC-ACTT----CA-TAGTCGGAC-GA-TGCCTGCATTGAttttaaagtaaaccaaatcctgacattgacgaactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|4 : ggcccagtatggcgtcgtccaatgcaggcattcggcgactacaaactgattcaatgcaggcattggaccagtatggcgtcatccaatgcagacattgggcgactaaactgatcggccgagtatggcgtaattcaatgcaggcattggccgagtatggagtcgtccaatgcaatcactgggtgactatgaactgatTCGT-C--AATGTC-AGG-ATTTGGTTTACTTTAAAA--TGTA---AATGCC--TGCACTGG-AC-GA-CTTT--CGAGTCGG-TCAGTGCCTGCATTGGACGACTactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|5 : ggcccagtatggcgtcgtccaatgcaggcattcggcgactacaaactgattcaatgcaggcattggaccagtatggcgtcatccaatgcagacattgggcgactaaactgatcggccgagtatggcgtaattcaatgcaggcattggccgagtatggagtcgtccaatgcaatcactgggtgactatgaactgattcaatgcaggcatcgtccgactatgaagtgatttaatgtaggcattaatttggtgaactatagTGCATGTATTTGGCATATTCTGACGTCCTCCAATGC-ATGTATT-GGGCATATTCTGACGTCATCCAACGC-AGGTAATTGGCATATTCTGACGTCATGCAA-TGCAGGTATT-TGGCAAATTCTAAAGTCATTCAAT---ACAGACGTTACTAGA-C--TTT--GAA-GTCGTTCAATG--G--ATT-T-GC-----TTCAGAATCTG--TTAAT-GCCCGCATTGGATAACTTTAGA-GTAAAACAATGCATGCACTGA--GAA--AAAGAA-----Tactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|6 : ACTATAAACTGATTTAATG---CAGGC---ATTGGACCAGTAT---GGCGTCATCCAATGCAGACATT-G-GC--C-G-----A--CT-AT---ATAGCAGGCAATGGCCGAATATGGT-GTCATTCAATGCAGGCATTG---------AACAACGCTTTGAT-----------------ACTC----TGCTGA----ATT-GCAATGTAT----CTTTCAACAG--------CCAATG-CATGCACTGGATGAAcgaacgacgcccgttctaggagaacattatantagagtaaaacaatgcatgcactgagaaaaatagtcaaacgacgcccgttctaggagaacattatgtgtacttgttccagcatttagacattaagacaaaaatgtatagtctaagttaaagtctaagttaattgcattcaggtacacaagtaaaatgttttcagcattttctcaaagtacattcaaatattcttaacttgaaaatactcttctaaaaaatacgctgatttgattttttttttttcaatttgctaaaacgtccattgaaattgctgaaaattttcgctagaattatgacagtgcgctagtgctttgcgatcgtaacaatttataacacataccgaaagttcgttattcaatttcaaaaatggat
gi|7 : tgAGTAT--GG-CGTCGTTCAATGCTTGCATA-GAGCGAC--TACAAA--ATGATTCAAT-GAAGGCATTGGACCAGTATGGC-GTCGTCCAATGCAGGCATTGGGCGAG--T-ACAAAT---TG-------------------ATTC--AATGCAGCC---ATTGGCCGTGTATGGCGTCCT--------------CTAATG-CAGGCATTAGTTGAA-T-ACAAAC-TGATTCAATGCAGACATTAG-AC--C-AGT--AT-GGCGTCATTTACTACTAGCATTG----GCTG--G-CTATGAACTGATT----CAATG-CAGGCATTGGATC-ACTT----TGTCAGGA-GCC-AA-TGCAGGCATTGtatctcatattggcctactttctcaggagccacatgcaattgcatgcctcaaataaacgtgtaccttaggacaatgcagacagtagtttacttttttcagagtcaatgaaagtattgatagaagcaaagctgagatagaatgacctgacatttgaggtctatgccttcttcagagtcattgcaagcactgaacttcttcctatgtgcagttagttcaagcattgcatgaccttctatctacagccaaagcagacggattta
gi|7 : --GAG--GAA-AA-----T-AT-----------------ATCT--AACG-AAACTAAACTGGCCGCA-ATGGCACTTT-----GAGAGTAGTCCAATG-CCTGCATTGGCT--CCTGACAAAG-TGATCCAATGCCTGCATT-GAAT--C-AGTTCAT-AGC--CAGCCAATGCTAGTAGTA----AATGACG-CCAT--ACTGGTC----TAATG-TCTGCATTGAATC-AGTT----TG-TATTC-AACTAA-TGCCTGCATTgactactctcaaagtgccattgcggccagtttagtttcgttagatatattttcctcttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|8 : agtatggcgtcgttcaatgcttgcatagagcgactacaaaatgattcaatgaaggcattggaccagtatggcgtcgtccaatgcaggcattgggcgagtacaaattgattcaatgcagccattggccgtgtatggcgtcctctAA-TAT-------TGGCTTT-A-ACTCTCAAAATGATAAA-AGAAAAT--T-TAGTTATT-TT--ATCATGAA-A-GTT---GTT--TTT---AATTA--CA-C--GGGT---A--CATAAT----GTAAA---TAT-GGTTTGCCA-TATA-CACATATTCACTGAAATGA-CCAGCG-AA-AGTTGGCATGG-AAACATCAACGT-ACTGTTG-ATAAT---ATTT-TTAACAGCTTATAA-C-CA-GTTT----GCAATG-T-TTTTGCGAATAAT-AATT----------G-CG--TTTGAAATC-G--GG-A-TATA-TTTGCCGTAGCGTAAT-TAAA-TCCGTTCAC---AAT-TA-ACAC-CGA-ATGT-GATTAA-ACATGAGGAAA--TTGAATGA--GTT-TACAATACA-CCGA-CCAC-TAttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|9 : aTCGGAACT--AATTTTT--TTTTTGT----TCATA--TCATTTTTT-TATAATATACAACC-AATGTTTCTCAATACTATTGAGAGATTTGCAATGGAA-TAT-------TGACTTTTAC--TCTCAAAATGATAAA-A----AC--T-GAGTTAAT-TT--ATCAT-AA-A-GTTTTGGTTTTTTTTTAAAT----TA-TATAAGT--TAT-CAGATT----G-AAAGGATAT-GGTTTA--A-TCTA-TGTA--TTCACAAAAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GCAAGTTGCCTCAGAGTTATTTGCAATCGTTATAACAATAAGACATTTATTATAAATAATGTGTTCAAATAAAGTAGTTTTTGGATAATATTAAAAAATCAGGATTGGGCATAAAATATTTTGTCACACT
Unaligned ( gi|18 ): GGTCTCTTCTAAATCTGTTAACGATATGGTCAAGGTATTTAGGGAC
Alignments
lowQualScore : 11 11 22222222222 1 333333333 1111111 2222 1111 1111 11111111 111 1111 111 1111 11 11 1 1 1 1 1 1 111 1 111 1 2222 111 111111 1 3333333 1 11 222222222 1 2222 1 111 1 1 11 1 111 1 11 11 11 1 1 1 1 1 11 11 22222222 1 222 22222222 222 11 22 1 1 777777777777777777777777777777777777777777777 22222222 222 33333 222 11 11 1 111 1 1 2222 1 11 1 1 3333333 1 1 1 555555 1 11 66666666666666666 1 11 1 1 222222 1 222 5555555 11 2222 2 1 11 777777777777777777777777777777777777 1 222 1 11 33333 1 2222 555555 33333 22 55555 1 2 1 1 1 1 1 1 2222222222222 1 1 11 222 222222 1 1 33 2222 1 1 11 1 11 1 1 1 1 11 1 11 3333 222 1 11111 111 33333333 11 7777777777777777777777777777777777777777 111 111111 555555555555555 111 22222222 11 111111111111 1 22222 33333333 1111
lowQualScore : 33 22 11 8 00000000000 6 1 6 0 3 6 99 888888888 6 5 8888888 2222 5 0000 9999 5 66 5 5 5 11111111 000 2222 5 0 1 99 555 7777 6 0 1 8 11 8 8 11 0 0 2 0 0 0 4 0 0 1 777 0 0 555 0 1111 444 999999 0 3 4444444 0 33 777777777 0 1111 2 0 1 777 0 9 0 11 2 0 777 0 3 0 33 33 33 0 5 0 0 3 3 88 44 99999999 6 7 7 3 0 7 555 3 6 22222222 333 88 6 1 00 7 2 6 3 3 777777777777777777777777777777777777777777777 7 66666666 444 00000 6 333 6 6 44 6 88 7 6 3 888 999 5 5 1111 5 22 77 1 5 5 22 3333333 5 5 1 2 5 444444 5 88 00000000000000000 1 5 77 5 5 1 1 1 22 7 444444 3 333 6 6666666 88 8888 6 2 88 7 444444444444444444444444444444444444 3 555 3 0 0 88 22222 3 1111 000000 3 3 4 66666 77 3 66666 5 0 5 2 5 5 5 1 1 1 5 1 5 3333333333333 1 1 5 1 1 5 1 1 1 1 88 22 1 1 000 1 777777 5 5 22 00 3333 5 1 5 88 22 5 1 22 1 22 1 1 1 88 5 5 1 1 5 1 5 88 22 22 1 5 22 66 88 2222 333 0 0 77777 1 3 111 55555555 11 0 0 0 8 0 1 8 1111111111111111111111111111111111111111 111 888888 4 0 333333333333333 5 4 0 555 6 0 6 55555555 11 8 5 0 0 888888888888 3 1 00000 8 0 3 3 22222222 8 1 1111 1
lowQualScore : .. .. .. . ........... . . . . . . .. ......... . . ....... .... . .... .... . .. . . . ........ ... .... . . . .. ... .... . . . . .. . . .. . . . . . . . . . . ... . . ... . .... ... ...... . . ....... . .. ......... . .... . . . ... . . . .. . . ... . . . .. .. .. . . . . . . .. .. ........ . . . . . . ... . . ........ ... .. . . .. . . . . . ............................................. . ........ ... ..... . ... . . .. . .. . . . ... ... . . .... . .. .. . . . .. ....... . . . . . ...... . .. ................. . . .. . . . . . .. . ...... . ... . ....... .. .... . . .. . .................................... . ... . . . .. ..... . .... ...... . . . ..... .. . ..... . . . . . . . . . . . . . ............. . . . . . . . . . . .. .. . . ... . ...... . . .. .. .... . . . .. .. . . .. . .. . . . .. . . . . . . . .. .. .. . . .. .. .. .... ... . . ..... . . ... ........ .. . . . . . . . ........................................ ... ...... . . ............... . . . ... . . . ........ .. . . . . ............ . . ..... . . . . ........ . . .... .
lowQualScore : 88 22 00 0 99999999999 7 7 7 3 3 7 88 222222222 7 7 6666666 6666 0 6666 4444 0 99 0 0 0 88888888 000 3333 7 1 7 22 888 0000 0 8 4 0 00 0 0 88 8 0 5 0 0 0 2 0 0 2 000 0 2 888 0 2222 888 222222 0 2 0000000 0 88 222222222 0 2222 5 0 0 555 0 8 0 22 0 0 555 2 2 0 88 88 00 0 0 0 7 3 3 33 77 00000000 7 3 3 3 7 3 777 7 7 77777777 333 33 7 0 00 3 0 7 7 3 333333333333333333333333333333333333333333333 3 33333333 333 00000 7 333 7 7 77 7 33 3 7 3 777 000 0 5 5555 0 00 55 0 5 5 00 0000000 0 0 0 5 0 000000 0 00 55555555555555555 0 0 55 0 5 0 0 0 00 3 777777 3 333 7 7777777 33 3333 7 0 33 3 777777777777777777777777777777777777 3 777 3 7 7 33 00000 3 7777 555555 0 0 0 55555 55 0 00000 0 0 5 5 0 5 5 0 0 0 0 0 0 5555555555555 0 0 5 0 0 0 0 0 0 0 00 00 0 0 555 0 555555 5 5 00 00 5555 0 0 0 55 00 0 0 00 0 00 0 0 0 55 5 0 0 0 0 0 5 55 00 00 0 5 00 55 33 3333 333 0 8 44444 0 2 000 44444444 00 8 8 6 0 6 0 0 3333333333333333333333333333333333333333 888 666666 6 8 333333333333333 7 0 3 999 7 7 7 99999999 00 0 0 6 8 222222222222 2 0 22222 0 6 8 2 22222222 0 0 4444 0
consensus : ACTCTGAACT--AATATTT--TTTT-GTC---TCA-A--T-ATTTTTT-CATAATAT-CGATC-AAT-TGTATTAA--------AGAGATTTGAAATGGAA-TAT-------TGACTTTTACACTCTCAAAATGATAAA-A----AC--G-GAGTTAAT-TT--ATCAT-AA-A-GTT---GTTGTTTT---AATCA--CA-TATGAGT--TATCCAGATT----GAAAAGGATTT-GGTTTA--A-TCTA-TGTAT-TTCACAAAAATGG-TCGGCG-AA-AGTTGGTATGG-AAACGTCAATGC-ACTGTTG-ATTATA--ATTG-TTTGCAACTTTTCATC-CA-TTTT----GCAATT-T-TTTT--AAATACT-AATTACAC----G-G-CG--CTTGAAATT-G--AGTA-TATG-TTT----TTGCGTAATGGAAA-TCCGATNAT---AAT-TATACAC-ATA-ACGT-GATT-T-ACATGAAG-GA--TTGAATGA--GTTATGCAATGCA-GCGACCCAC-TAACG-CGAAA-GA--AATACTTGCCATGGG-CA--T-TTTCGCAAAAGAATTTACAATA-TAGCGAAATCGTTTCA--TTTTAACGCCAATGCAGA-ATT-TATAACTAT---TTT--TTGGTGAATTNCAGCATG-ACCGTAGCTCTCTCGCTTGTAGCGA-ATCTCT--TAAN---TCGGTCATGCCAACGG-ACTGGGC-GC-G-AC-TCTCAAT---GGGACCAATA-TCGGCAGTAG-AA--CCACCTCGACT---ATTTCAAGAAGCCAATAACAGGCAATTACCCAACTCTGT--CACAAAAGCCAAT-GCCCGGC--GTTGGAGCCACTATTTCGNGAGAGCCAATGNNGGCTTTGGNTGAATATCTGAACAGCCGATTGCAGNNTTAGTATACTAGAGAATATCGATTTCNTCCGATGGCAGGCGTTGGGACGGTACGACGTCATCCAATGCAGCATTTTTATCTTCCTGCAGGCATTGNCTATACTATAAAGCCTGACTCAATGCAGGNATTGGNCCANTNNTGGCGTCGTCCAA---TGCAGG-CA---TTGGGCGA-------CTAC--AACT----GATTCCAATGC-AGGCATTGGGCCA--GTTATGG-GTCG-TCC--C--GCGNC-TT-TCG-----TA--AACT-GATTT--ATG-CGGGCGATTGG--CC-GA--TATGGC-GTCGT-C--AATGCAGGCAATTGGNCNACTNAANAATGGATTCAATGCAACGGCATTGGGNCTGAGTTATGGCGTGCCGTCCCAATGCAGGCATTGGGCGANTGCAAACCTGAATTCAAATGCAGNCATTGGNCNAGTATGCGTCTTCCCAATGCAGGCAATGGTTGACTAACAAACTGATTCAATGCAGGCATTTGGAGCAGTATGGCGTTNTCGAATGCAGGGCGTTGGGGCGACTGGCGNGAACTGATTNAGATNCAGGCATNGGACCANTGTGCGTCGTCCAAATGCTTGCATTGAGCGANTATACNTACNGANCCAAACTGNNGNCATTGGNACCAGTNTGGGCCCCGGGTGTGTCCAATGCNNGCATTCGAGCGGCTTGACTACAANTGATCTAATGCNNGCATCTGAACAGTATGGGTCGTCCAATGCTGCTATTGAAAGCGATACAAACTGTTTATGCANGNNTTNGGNNCANTNTGGCGTCNTCCAATGCAATGCATTCGGGCGNACTNTGACGTNATCCAACGCAAGGCAATTGGNNCATNNTGGCGTCGTNCAATTGCNNGCATTANGGCGAACTATAAANTGATTCAATG--ACAGGC---ATTGGA-CAGTAT--GGGCGTCGTCCAATGCAGGCATT-G-GCGAC-GTACAAA--CTGATTCAAT-GCAGGCATTGGACNAGTATGGC-GTCGTCCAATGCAGGCATTGG--GAG--TAACAA-----TGAT-----------------ATTC--AATGCAGGC---ATTGGCCGCGTATGGCGCCTT-----G--------CCAATG-CAGGCACTGGTTGAACT-ACGAAC-TGATTCAATGCAGGCATTGGAAC--C-AGT--AT-GGCGTCATTTAATGCTAGCATTG----GNTGA-G-CTATGAANTGATC----TAATG-CAGGCATTGGATCACTT----CG-CAGTC-GAC-GA-TGCNGGCATTGACA
Reference ( family-6305 ) : ACTCTGAACT--AATATTT--TTTT-GTC---TCA-A--T-ATTTTTT-CATAATAT-CGATC-AAT-TGTATTAA--------AGAGATTTGAAATGGAA-TAT-------TGACTTTTACACTCTCAAAATGATAAA-A----AC--G-GAGTTAAT-TT--ATCAT-AA-A-GTT---GTTGTTTT---AATCA--CA-TATGAGT--TATCCAGATT----GAAAAGGATTT-GGTTTA--A-TCTA-TGTAT-TTCACAAAAATGG-TCGGCG-AA-AGTTGGTATGG-AAACGTCAATGC-ACTGTTG-ATTATA--ATTG-TTTGCAACTTTTCATC-CA-TTTT----GCAATT-T-TTTT--AAATACT-AATTACAC----G-G-CG--CTTGAAATT-G--AGTA-TATG-TTT----TTGCGTAATGGAAA-TCCGATNAT---AAT-TATACAC-ATA-ACGT-GATT-T-ACATGAAG-GA--TTGAATGA--GTTATGCAATGCA-GCGACCCAC-TAACG-CGAAA-GA--AATACTTGCCATGGG-CA--T-TTTCGCAAAAGAATTTACAATA-TAGCGAAATCGTTTCA--TTTTAACGCCAATGCAGA-ATT-TATAACTAT---TTT--TTGGTGAATTNCAGCATG-ACCGTAGCTCTCTCGCTTGTAGCGA-ATCTCT--TAAN---TCGGTCATGCCAACGG-ACTGGGC-GC-G-AC-TCTCAAT---GGGACCAATA-TCGGCAGTAG-AA--CCACCTCGACT---ATTTCAAGAAGCCAATAACAGGCAATTACCCAACTCTGT--CACAAAAGCCAAT-GCCCGGC--GTTGGAGCCACTATTTCGNGAGAGCCAATGNNGGCTTTGGNTGAATATCTGAACAGCCGATTGCAGNNTTAGTATACTAGAGAATATCGATTTCNTCCGATGGCAGGCGTTGGGACGGTACGACGTCATCCAATGCAGCATTTTTATCTTCCTGCAGGCATTGNCTATACTATAAAGCCTGACTCAATGCAGGNATTGGNCCANTNNTGGCGTCGTCCAA---TGCAGG-CA---TTGGGCGA-------CTAC--AACT----GATTCCAATGC-AGGCATTGGGCCA--GTTATGG-GTCG-TCC--C--GCGNC-TT-TCG-----TA--AACT-GATTT--ATG-CGGGCGATTGG--CC-GA--TATGGC-GTCGT-C--AATGC-GGC-ATTGGTCTACTAAAA--TGGATTCAATGCA--GGCATTGGGAC-GA-CTATGGCGTGTCGT-CCAATGCAGGCATTGGGCGACTGCAAACCTGAATTCAAATGCAGNCATTGGNCNAGTATGCGTCTTCCCAATGCAGGCAATGGTTGACTAACAAACTGATTCAATGCAGGCATTTGGAGCAGTATGGCGTTNTCGAATGCAGGGCGTTGGGGCGACTGGCGNGAACTGATTNAGATNCAGGCATNGGACCANTGTGCGTCGTCCAAATGCTTGCATTGAGCGANTATACNTACNGANCCAAACTGNNGNCATTGGNACCAGTNTGGGCCCCGGGTGTGTCCAATGCNNGCATTCGAGCGGCTTGACTACAANTGATCTAATGCNNGCATCTGAACAGTATGGGTCGTCCAATGCTGCTATTGAAAGCGATACAAACTGTTTATGCANGNNTTNGGNNCANTNTGGCGTCNTCCAATGCAATGCATTCGGGCGNACTNTGACGTNATCCAACGCAAGGCAATTGGNNCATNNTGGCGTCGTNCAATTGCNNGCATTANGGCGAACTATAAANTGATTCAATG--ACAGGC---ATTGGA-CAGTAT--GGGCGTCGTCCAATGCAGGCATT-G-GCGAC-GTACAAA--CTGATTCAAT-GCAGGCATTGGACNAGTATGGC-GTCGTCCAATGCAGGCATTGG--GAG--TAACAA-----TGAT-----------------ATTC--AATGCAGGC---ATTGGCCGCGTATGGCGCCTT-----G--------CCAATG-CAGGCACTGGTTGAACT-ACGAAC-TGATTCAATGCAGGCATTGGAAC--C-AGT--AT-GGCGTCATTTAATGCTAGCATTG----GNTGA-G-CTATGAANTGATC----TAATG-CAGGCATTGGATCACTT----CG-CAGTC-GAC-GA-TGCNGGCATTGACA
gi|1 : ACTCTGAACCTAAATATTT--TTTT-GTC---TCA-A--T-ATTTTTT-CATAATAT-TGATC-CAT-TGTATTAA--------AGATATTTGAAATGGA--TAT-------TGACTTTTACACTCTCAAAA-GATAAA-A----AC--G-GAGTTAAT-TTTGATCAT-CA-A-ATT---GTTGTTTT---AATCA--TA-TATGAGT--TATCCAGATTTAATAAAAAGGATTT-GGTTTC--A-TCTA-TGTAT-TTAACAAAAATGGGTCGGCGCAA-AGTTGGTATGG-AAACTCTAATGC-ACTGTTGGATTATATAATTG-GTTGCAACTTTTTATC-CA-TTTT----GCAATT-TCTTTT--AAAAACT-AATTACAA----G-GGCT--CTTGAAATT-GTTAATA-TATG-TTT----TTGCGAAATGGAAA-CCGAATAAT---AAT-TATATTC-ATA-GCAT-GATT-T-ACATGAAG-AA--TTGAATGA--GTTATGGAATGCA-GCAACCCAC-TATCGACGAAAAGA--AATACT-GCCATGG--CA--T-TTTTGCAAAA-AATGGACAATA-TAGCGAAATCGTTTCAATTTTTATTGCCAAT-CAGACATT-TA-AACTAT---TAT--TTGATGAATACCAGCAT--ACCGTAGCTTTCGCGCTTGTAACGA-ATCTTTAGTAAGAATTCAATCA---CAGC----CTGGA--AT-G-AC-TTTCAAT---GA---CAATA-GTGGCAGTAG-AATACCACTCAGAAT---ATTTCAAGAA-CCAATAACAAACA-TTACCCCACTCTGT--CACAAAAGC--AT-GCCCGGC--GTTGGAGCCACTATTTCGC---AGCCAATGGAGGCTTTGGGTGAATA-CTGAACAACCAAT-GCAGCGTTAGTATACTAGA-AATAT-GATTTCATCAGATGGCAGGTGTTGGG--GGT-CGACATCATCCAATGTAGCATTTTTATCTTCCTGCAGGCATTGTCTATACTATAAA--CTGA-TCAATGCAGGCATTGGACCAGTCCTGGTGTCGTCCAA---TGCAGG-TAGGATTGAGCGA-------CTAC--AACT----GATTCCAATGC-ATGCATTGGACCA--GTTATGG-GTCGGTCC--CAAGCGAC------G-----TA--AACT-GATTTCCATG-CAGGCAATTGGAACC-AA--CAAGGC-GTCGT-CGAAATGC-G-C--TTGAGCGACTAAAAAATGGATTCAATGCAACGGCATTGGGAC-GAGTTATGGCGTGTCGT-CCAATGCAGGTAT-GGGCGAGTACAAACCTGA-TTCAAATGCAGCCATTGGCCGAGTATGCGTCTTCCCAATGCAGGCAATGGTTGACTAACAAACTGATTCAATGCAGGCATTTGGAGCAGTATGG-GTTGTCGAATGCAGGGCATTGGGGCGACTGGTGTAAACTGATTGAAATGCAGGCATTGGACCAGTATGCGTCGTCCAAATGCTTGCATTGAGCGACTATACATACTGATTCAA--TGCAGGCATTGGAACCAGTATGGGCCCCGGGTGTGTCCAATGCAGGCATTC-AGCG----GACTACAACT-ATTTAATGCAGGCAT-TGAACAGTATGGGTCGTCCAATGCTGCTATTGAAAGCGATACAAACTGTTTATGTAGGATTTGGGACCAGTATGGCGTCGTCCA--GCAATGCATTCAAACGAACTATAAC-TGATTCAATGCAAGGC--TTGGACCATAATGGCGTCGTTCAATTGCTTGCATTAGAGCGAACAACAAAA-GATTCAATGAAAAAGGC---ATTGGA-CAGTATGGGGGCGTCGTCCAATGCAGGCATT-G-GCGACAGTA-AAA--CGGATTCCAT-GCAAGCATTGGCCTAGTATGACGGTCGTCCAATGCAGGCATGGG--GAG--TAACAA-----TGAT-----------------ATTCAAAATGCA-GC---ATTGGCCGTGTATGGCGCCT---------------CTAATG-CAGGCA-TAGTTGAAAT-ACAAACATGATTC-ATGCAGACATTAGAACCAC-AGT--ATGGGCGT-ATTT-ATACTAGCATTG----GCTTG-G-CTATGAAATGAT-----TAATGCCAGGCA-TGGATCACTTATAGAA-CAGTT-GAA-GG-GGAGGGCATTGACA
gi|10 : GAG-GAATATATCTACGAAACTAAACTGGCGCCATTGGCAC---TTTG------AGGTG-GTCC-ATGCCTGCATT-GAGCGGCTTGACTA-AAGTGATC--ATGCCTGCATCTGAA
gi|11 : TTGGCCCATTGTTGGCGTCGTCCAATTTTCTAGGCCA---TTGGCCGAATTCCATTTACTAAACTTGAAAATTTCAATACTAGGCATTTGGTCAATGTTATG--------CC--T--GCGCT-TT-TCA-----TATTAACTCAATTT---TG-CAGGCATTTGG--CCTGT--TATGGT-GTCAT-C--tctttatatcaatcaacagaattgcttttttgctcatcaaaaataaaaccgactaatttcttagtgttcattagagcattatgaattgtaataaaaatgag
gi|12 : ttcaatttgaatggctacA-A--T-ATTTT------AGTTT-AGATCTAAA-TGTTTTGA---------GTGATTTTAAATGAAA-TAT-------TGGCTTTTAC--TTTCAAAATGATAAA-A----AC--T-GAGTTAAT-TT--ATCAT-AA-G-A-----GTTGTTTT-----TCA--CA-CATGttataccctacatcagttgggct
gi|13 : atcactcaaaacattaagatcttataacttggacaatCTCTGAACT--ATTTTCT--TTTT-GTC----CA-AATT-ATTTTTT-CATAATATTCGATC-AAT--GTATTAA---------GAGATTTGAAAAGGAA-TAT-------TGACTTTT--ACTCTCAAAATGATAAA-A----ACTAGTAAGTTAAT-TT---------G-A-GTT---GT--TTTT---AAT----CA-TATGAGT--TAcac
gi|15 : tgcgATGGCGTTTTCGAATGCA-GGCGTTG----AAC--GC-AGAACTGATTCAGATTC-GACATAAGACCACTGTG
gi|16 : tggATG-CAGGCGCTGGTCGA-CT-ATGAAC-TGATTCACTGCAGGCATTGG
gi|17 : ccCTTTTAC--TCTCGAAATGATAAA-A----AC--T-GAGTTGAT-TT--ATCAT-AAGA-GTT---Ggcg
gi|2 : ACTCTGAATT--AA-ATTT--TTTT-GTCAAATTA-T--T-TTTTTTT-TATATTAA-CAATC-AAT-GGTATTAAT-------AGA-ATTTGAA-TGGAA-TATCATGTATTGACTTTC-TACTCTCAA--TGATAAATA----AC--G-AAGT--AT-TT--ATCAT-AA-A-GT-------GTTTT---AATCAATCAATGTG-GT--TATC-AGATT----GAAG-GAATTT-GGTTTA--A-TCTA-TGTAT-T-CACAAAAATGG-TCGG-G-AACAGTTGGTATGG-AAACGTCAATGT-ACTGTTG-ATCATA--ATTG-TTTGCCACTGTTCAT--CA-TTTTGGCCGCAATTAT-TTTT--AA--ACT-AATTACAT----GTG-CG--CTTGAAATTCG--TATG-TATGTTTT----TTGCGTAATGGAAA-TCCGATCAT---AAT-TTAACACGATA-TCATCGATT-TAATATG-AG-GA--TTGAATGA--CTTA-GCAATGCACGCGACCAACTTAATA-TGAAA-AATGAATGC-TGCCATGGG-TATTT-TTTCGGCAAAGAA-TTACAATACTAAGAAAATCG-TTCA--TTTTAACGTCAATGCAGA-AAT-T-TAACTAT---TTT--TT-GTCAATTACAGCATG-ATCGT-GCT---TCGCTTGTAGAGA-ATCTCT--TCTC---TCGGTCATGCCAACAG-ACTGGGTGGC-G-ACATCTC-AT---TGGACCAATA-T-GGCAGTAGCAA--CCACCTCGACT---ATTTCAAGAAGCCAATATGAGGC-ATTA-CCAACTCTGT--CAC--AAGCCAATCGCAGGCC--ATTGGA-CCAC-ATTTCAAGAGAG-CAATGCTG--TTTGGTTGAATATCTGAACAGCCGATTGCAGGTTTAG-------GAGAATATCAATTTCTTTCAAT-GCAGGCGTTGGGAC---ACAA-GTCATCCAATGC--CA-----------------GCATTGGTTATA-TATAAAGCTTGACTCAATGC-GGAATTGGGCCCATTATGGCGGCGTCC-A---TG-AGG-CA---TT-GGCGAT------CTAC--AACT----GATTCATATGCAAGGCATTGGG-CA--G--ATGGCGTCG-TCCAAT--GCGGCATTGTCAGCTGTTA--AACT-GATTC--ATGACGGGCGATTGG--CC-AAGTTTTGGCGGTCGTAC--AATGCAGGCAATTGGTCTACTTAAC--T-GATTCAATGCA--GGCATTGGGCCTG---TATGGCAT-CCGTCCCAATGCAGGCATTGGGCGACTGTAAA-CTGAATTC-AATGCAGGCATTGGGCCAGTATGCGc
gi|3 : cTATTTCATTTC-GCA---TTA-G--T-GCTTGCTGCATTGCAT-CGATC-A-T-TATATTTA--------AGATATTTGAAATGGAACTAT-------GTACTTTTAC--TCCCAAAATGATAAA-A----ACT-G-AAGTTAATCTT--ATTAT-AA-AAGTT-----TGTTTT---AATCA--CT-TATGAGTATTATC-AAATT----GAAAAGGATTTTGGTTTA--AATCTAATGTAC-TTCACAAAAATGG-TCAGCG-AA-AGTTGGTATGGAAAACATCAATGCGATCGTTG-ATTATA--ATTGTTTTGCAACTTTTCATCGCATTTTT----GCAATT-C-TTTT--ATTTGCTAAATGACACCAGTG-G-CGCACTTGAAATT-T--AGTATTATG-TTT----TTGCGTAATGGACATTCCGATAGTATGAATATATGTAC-ATATACAT-GATT-T-AAATGAAG-GAATTTGAATGACCGCTTTGCAATGCA-GCAG--CAC-TAATG-CGAAT-GA--AATACTTGCGATGGGTCA--TGTTTCGCAAAAGAATTTACAA-A-TAGCAAAATCTTTTCA---TTTAAAGCCAATGCAGA-TTTATATAACTATATCTTTGATTGGTGGCTTTAAGCATGTACTATATCTCTCTC--------CGAGATC------AAA-------CCATGC--ACGATACT-GGC-GCTGTACTTCTCAATGCCGGGATCAATACTCGGCAGTAG--A--CCA-CTCGACTTAAATTTCAA-AAGCCAACTACAGGCAATTACCCAACTCTGTCCCACAAAAGCCAAT-G-CTGGCTTATTGGcgcgtaataatgc
gi|4 : g-CAGTAT--GG-CGTCGTCCAATGCAGGCATTCG-GCGAC--TACAAA--CTGATTCAAT-GCAGGCATTGGACCAGTATGGC-GTCATCCAATGCAGACATTGG--GCGACTAA-AC-----TGATCGGCCGAGTATGGCGTAATTC--AATGCAGGC---ATTGGCCGAGTATGGAGTCGT--------------CCAATG-CAATCACTGGGTG-ACT-ATGAAC-TGATTCAATGCAGGCATCGT--C--CGACT--AT-GAAGTGATTTAATGTAGGCATTAATTTGGTGA-A-CTATAGAGTCGTC----CAATG-CAGGCACT-GACCGACT----CGAAAGTC-GTC-CAGTGCAGGCATTTACA
gi|4 : ggccTC-----G--------TCAATGTCAGGATTTGGTTTA-CT-TTAAAA-TG--TAAATGCCTGCACTGGA-C--G-ACT--TT-CGAGTCGGTCAGTGCCTGCATTG----GACGA-CTCTAT-AGTTCACCAAATTAATG-CCTACATTAAATCACTT----CA-TAGTCGGAC-GA-TGCCTGCATTGAttttaaagtaaaccaaatcctgacattgacgaactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|5 : ggcccagtatggcgtcgtccaatgcaggcattcggcgactacaaactgattcaatgcaggcattggaccagtatggcgtcatccaatgcagacattgggcgactaaactgatcggccgagtatggcgtaattcaatgcaggcattggccgagtatggagtcgtccaatgcaatcactgggtgactatgaactgatTGCATGTATTTGGCATATTCTGACGTCCTCCAATGC-ATGTATT-GGGCATATTCTGACGTCATCCAACGC-AGGTAATTGGCATATTCTGACGTCATGCAA-TGCAGGTATT-TGGCAAATTCTAAAGTCATTCAAT---ACAGACGTTACTAGA-C--TTT--GAA-GTCGTTCAATG--G--ATT-T-GC-----TTCAGAATCTG--TTAAT-GCCCGCATTGGATAACTTTAGA-GTAAAACAATGCATGCACTGA--GAA--AAAGAA-----Tactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|6 : ACTATAAACTGATTTAATG---CAGGC---ATTGGACCAGTAT---GGCGTCATCCAATGCAGACATT-G-GC--C-G-----A--CT-AT---ATAGCAGGCAATGGCCGAATATGGT-GTCATTCAATGCAGGCATTG---------AACAACGCTTTGAT-----------------ACTC----TGCTGA----ATT-GCAATGTAT----CTTTCAACAG--------CCAATG-CATGCACTGGATGAAcgaacgacgcccgttctaggagaacattatantagagtaaaacaatgcatgcactgagaaaaatagtcaaacgacgcccgttctaggagaacattatgtgtacttgttccagcatttagacattaagacaaaaatgtatagtctaagttaaagtctaagttaattgcattcaggtacacaagtaaaatgttttcagcattttctcaaagtacattcaaatattcttaacttgaaaatactcttctaaaaaatacgctgatttgattttttttttttcaatttgctaaaacgtccattgaaattgctgaaaattttcgctagaattatgacagtgcgctagtgctttgcgatcgtaacaatttataacacataccgaaagttcgttattcaatttcaaaaatggat
gi|7 : tgAGTAT--GG-CGTCGTTCAATGCTTGCATA-GAGCGAC--TACAAA--ATGATTCAAT-GAAGGCATTGGACCAGTATGGC-GTCGTCCAATGCAGGCATTGGGCGAG--T-ACAAAT---TG-------------------ATTC--AATGCAGCC---ATTGGCCGTGTATGGCGTCCT--------------CTAATG-CAGGCATTAGTTGAA-T-ACAAAC-TGATTCAATGCAGACATTAG-AC--C-AGT--AT-GGCGTCATTTACTACTAGCATTG----GCTG--G-CTATGAACTGATT----CAATG-CAGGCATTGGATCACTT----TGTCAGGA-GCC-AA-TGCAGGCATTGtatctcatattggcctactttctcaggagccacatgcaattgcatgcctcaaataaacgtgtaccttaggacaatgcagacagtagtttacttttttcagagtcaatgaaagtattgatagaagcaaagctgagatagaatgacctgacatttgaggtctatgccttcttcagagtcattgcaagcactgaacttcttcctatgtgcagttagttcaagcattgcatgaccttctatctacagccaaagcagacggattta
gi|7 : --GAG--GAA-AA-----T-AT-----------------ATCT--AACG-AAACTAAACTGGCCGCA-ATGGCACTTT-----GAGAGTAGTCCAATG-CCTGCATTGGCTC--CTGACAAAG-TGATCCAATGCCTGCATTG-AAT--C-AGTTCAT-AGC--CAGCCAATGCTAGTAGTA----AATGACG-CCAT--ACTGGTC----TAATG-TCTGCATTGAATCAGTT----TG-TATTC-AACTAA-TGCCTGCATTgactactctcaaagtgccattgcggccagtttagtttcgttagatatattttcctcttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|8 : agtatggcgtcgttcaatgcttgcatagagcgactacaaaatgattcaatgaaggcattggaccagtatggcgtcgtccaatgcaggcattgggcgagtacaaattgattcaatgcagccattggccgtgtatggcgtcctctAA-TAT-------TGGCTTT-A-ACTCTCAAAATGATAAA-AGAAAAT--T-TAGTTATT-TT--ATCATGAA-A-GTT---GTT--TTT---AATTA--CA-C--GGGT---A--CATAAT----GTAAA---TAT-GGTTTGCCA-TATA-CACATATTCACTGAAATGA-CCAGCG-AA-AGTTGGCATGG-AAACATCAACGT-ACTGTTG-ATAAT---ATTT-TTAACAGCTTATAA-C-CA-GTTT----GCAATG-T-TTTTGCGAATAAT-AATT----------G-CG--TTTGAAATC-G--GG-A-TATA-TTTGCCGTAGCGTAAT-TAAA-TCCGTTCAC---AAT-TA-ACAC-CGA-ATGT-GATTAA-ACATGAGGAAA--TTGAATGA--GTT-TACAATACA-CCGA-CCAC-TAttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|9 : aTCGGAACT--AATTTTT--TTTTTGT----TCATA--TCATTTTTT-TATAATATACAACC-AATGTTTCTCAATACTATTGAGAGATTTGCAATGGAA-TAT-------TGACTTTTAC--TCTCAAAATGATAAA-A----AC--T-GAGTTAAT-TT--ATCAT-AA-A-GTTTTGGTTTTTTTTTAAAT----TA-TATAAGT--TAT-CAGATT----G-AAAGGATAT-GGTTTA--A-TCTA-TGTA--TTCACAAAAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GCAAGTTGCCTCAGAGTTATTTGCAATCGTTATAACAATAAGACATTTATTATAAATAATGTGTTCAAATAAAGTAGTTTTTGGATAATATTAAAAAATCAGGATTGGGCATAAAATATTTTGTCACACT
Unaligned ( gi|18 ): GGTCTCTTCTAAATCTGTTAACGATATGGTCAAGGTATTTAGGGAC
Alignments
lowQualScore : 11 11 22222222222 1 333333333 1111111 2222 1111 1111 11111111 111 1111 111 1111 11 11 1 1 1 1 1 1 111 1 111 1 2222 111 111111 1 3333333 1 11 222222222 1 2222 1 111 1 1 11 1 111 1 11 11 11 1 1 1 1 1 11 11 22222222 1 222 22222222 222 11 22 1 1 777777777777777777777777777777777777777777777 22222222 222 33333 222 11 11 1 111 1 1 2222 1 11 1 1 3333333 1 1 1 555555 1 11 66666666666666666 1 11 1 1 222222 1 222 5555555 11 2222 2 1 11 777777777777777777777777777777777777 1 222 1 11 33333 1 2222 11 11 22222 11 22222 1 1 1 1 1 1 1 1 2222222222222 1 1 11 222 222222 1 1 33 2222 1 1 11 1 11 1 1 1 1 11 1 11 3333 222 1 11111 111 33333333 11 7777777777777777777777777777777777777777 111 111111 555555555555555 111 22222222 11 111111111111 1 22222 33333333 1111
lowQualScore : 33 22 11 8 00000000000 6 1 6 0 3 6 99 888888888 6 5 8888888 2222 5 0000 9999 5 66 5 5 5 11111111 000 2222 5 0 1 99 555 7777 6 0 1 8 11 8 8 11 0 0 2 0 0 0 4 0 0 1 777 0 0 555 0 1111 444 999999 0 3 4444444 0 33 777777777 0 1111 2 0 1 777 0 9 0 11 2 0 777 0 3 0 33 33 33 0 5 0 0 3 3 88 44 99999999 6 7 7 3 0 7 555 3 6 22222222 333 88 6 1 00 7 2 6 3 3 777777777777777777777777777777777777777777777 7 66666666 444 00000 6 333 6 6 44 6 88 7 6 3 888 999 5 5 1111 5 22 77 1 5 5 22 3333333 5 5 1 2 5 444444 5 88 00000000000000000 1 5 77 5 5 1 1 1 22 7 444444 3 333 6 6666666 88 8888 6 2 88 7 444444444444444444444444444444444444 3 555 3 0 0 88 22222 3 1111 88 88 1 1 1 55555 88 1 66666 5 5 5 1 5 5 5 1 1 1 5 1 5 3333333333333 1 1 5 1 1 5 1 1 1 1 88 22 1 1 000 1 777777 5 5 22 00 3333 5 1 5 88 22 5 1 22 1 22 1 1 1 88 5 5 1 1 5 1 5 88 22 22 1 5 22 66 88 2222 333 0 0 77777 1 3 111 55555555 11 0 0 0 8 0 1 8 1111111111111111111111111111111111111111 111 888888 4 0 333333333333333 5 4 0 555 6 0 6 55555555 11 8 5 0 0 888888888888 3 1 00000 8 0 3 3 22222222 8 1 1111 1
lowQualScore : .. .. .. . ........... . . . . . . .. ......... . . ....... .... . .... .... . .. . . . ........ ... .... . . . .. ... .... . . . . .. . . .. . . . . . . . . . . ... . . ... . .... ... ...... . . ....... . .. ......... . .... . . . ... . . . .. . . ... . . . .. .. .. . . . . . . .. .. ........ . . . . . . ... . . ........ ... .. . . .. . . . . . ............................................. . ........ ... ..... . ... . . .. . .. . . . ... ... . . .... . .. .. . . . .. ....... . . . . . ...... . .. ................. . . .. . . . . . .. . ...... . ... . ....... .. .... . . .. . .................................... . ... . . . .. ..... . .... .. .. . . . ..... .. . ..... . . . . . . . . . . . . . ............. . . . . . . . . . . .. .. . . ... . ...... . . .. .. .... . . . .. .. . . .. . .. . . . .. . . . . . . . .. .. .. . . .. .. .. .... ... . . ..... . . ... ........ .. . . . . . . . ........................................ ... ...... . . ............... . . . ... . . . ........ .. . . . . ............ . . ..... . . . . ........ . . .... .
lowQualScore : 88 22 00 0 99999999999 7 7 7 3 3 7 88 222222222 7 7 6666666 6666 0 6666 4444 0 99 0 0 0 88888888 000 3333 7 1 7 22 888 0000 0 8 4 0 00 0 0 88 8 0 5 0 0 0 2 0 0 2 000 0 2 888 0 2222 888 222222 0 2 0000000 0 88 222222222 0 2222 5 0 0 555 0 8 0 22 0 0 555 2 2 0 88 88 00 0 0 0 7 3 3 33 77 00000000 7 3 3 3 7 3 777 7 7 77777777 333 33 7 0 00 3 0 7 7 3 333333333333333333333333333333333333333333333 3 33333333 333 00000 7 333 7 7 77 7 33 3 7 3 777 000 0 5 5555 0 00 55 0 5 5 00 0000000 0 0 0 5 0 000000 0 00 55555555555555555 0 0 55 0 5 0 0 0 00 3 777777 3 333 7 7777777 33 3333 7 0 33 3 777777777777777777777777777777777777 3 777 3 7 7 33 00000 3 7777 00 55 0 0 0 55555 00 0 55555 0 0 5 0 0 5 5 0 0 0 0 0 0 5555555555555 0 0 5 0 0 0 0 0 0 0 00 00 0 0 555 0 555555 5 5 00 00 5555 0 0 0 55 00 0 0 00 0 00 0 0 0 55 5 0 0 0 0 0 5 55 00 00 0 5 00 55 33 3333 333 0 8 44444 0 2 000 44444444 00 8 8 6 0 6 0 0 3333333333333333333333333333333333333333 888 666666 6 8 333333333333333 7 0 3 999 7 7 7 99999999 00 0 0 6 8 222222222222 2 0 22222 0 6 8 2 22222222 0 0 4444 0
consensus : ACTCTGAACT--AATATTT--TTTT-GTC---TCA-A--T-ATTTTTT-CATAATAT-CGATC-AAT-TGTATTAA--------AGAGATTTGAAATGGAA-TAT-------TGACTTTTACACTCTCAAAATGATAAA-A----AC--G-GAGTTAAT-TT--ATCAT-AA-A-GTT---GTTGTTTT---AATCA--CA-TATGAGT--TATCCAGATT----GAAAAGGATTT-GGTTTA--A-TCTA-TGTAT-TTCACAAAAATGG-TCGGCG-AA-AGTTGGTATGG-AAACGTCAATGC-ACTGTTG-ATTATA--ATTG-TTTGCAACTTTTCATC-CA-TTTT----GCAATT-T-TTTT--AAATACT-AATTACAC----G-G-CG--CTTGAAATT-G--AGTA-TATG-TTT----TTGCGTAATGGAAA-TCCGATNAT---AAT-TATACAC-ATA-ACGT-GATT-T-ACATGAAG-GA--TTGAATGA--GTTATGCAATGCA-GCGACCCAC-TAACG-CGAAA-GA--AATACTTGCCATGGG-CA--T-TTTCGCAAAAGAATTTACAATA-TAGCGAAATCGTTTCA--TTTTAACGCCAATGCAGA-ATT-TATAACTAT---TTT--TTGGTGAATTNCAGCATG-ACCGTAGCTCTCTCGCTTGTAGCGA-ATCTCT--TAAN---TCGGTCATGCCAACGG-ACTGGGC-GC-G-AC-TCTCAAT---GGGACCAATA-TCGGCAGTAG-AA--CCACCTCGACT---ATTTCAAGAAGCCAATAACAGGCAATTACCCAACTCTGT--CACAAAAGCCAAT-GCCCGGC--GTTGGAGCCACTATTTCGNGAGAGCCAATGNNGGCTTTGGNTGAATATCTGAACAGCCGATTGCAGNNTTAGTATACTAGAGAATATCGATTTCNTCCGATGGCAGGCGTTGGGACGGTACGACGTCATCCAATGCAGCATTTTTATCTTCCTGCAGGCATTGNCTATACTATAAAGCCTGACTCAATGCAGGNATTGGNCCANTNNTGGCGTCGTCCAA---TGCAGG-CA---TTGGGCGA-------CTAC--AACT----GATTCCAATGC-AGGCATTGGGCCA--GTTATGG-GTCG-TCC--C--GCGNC-TT-TCG-----TA--AACT-GATTT--ATG-CGGGCGATTGG--CC-GA--TATGGC-GTCGT-C--AATGCAGGCAATTGGNCNACTNAANAATGGATTCAATGCAACGGCATTGGGNCTGAGTTATGGCGTGCCGTCCCAATGCAGGCATTGGGCGANTGCAAACCTGAATTCAAATGCAGNCATTGGNCNAGTATGCGTCTTCCCAATGCAGGCAATGGTTGACTAACAAACTGATTCAATGCAGGCATTTGGAGCAGTATGGCGTTNTCGAATGCAGGGCGTTGGGGCGACTGGCGNGAACTGATTNAGATNCAGGCATNGGACCANTGTGCGTCGTCCAAATGCTTGCATTGAGCGANTATACNTACNGANCCAAACTGNNGNCATTGGNACCAGTNTGGGCCCCGGGTGTGTCCAATGCNNGCATTCGAGCGGCTTGACTACAANTGATCTAATGCNNGCATCTGAACAGTATGGGTCGTCCAATGCTGCTATTGAAAGCGATACAAACTGTTTATGCANGNNTTNGGNNCANTNTGGCGTCNTCCAATGCAATGCATTCGGGCGNACTNTGACGTNATCCAACGCAAGGCAATTGGNNCATNNTGGCGTCGTNCAATTGCNNGCATTANGGCGAACTATAAANTGATTCAATG--ACAGGC---ATTGGA-CAGTAT--GGGCGTCGTCCAATGCAGGCATT-G-GCGAC-GTACAAA--CTGATTCAAT-GCAGGCATTGGACNAGTATGGC-GTCGTCCAATGCAGGCATTGG--GAG--TAACAA-----TGAT-----------------ATTC--AATGCAGGC---ATTGGCCGCGTATGGCGCCTT-----G--------CCAATG-CAGGCACTGGTTGAACT-ACGAAC-TGATTCAATGCAGGCATTGGAAC--C-AGT--AT-GGCGTCATTTAATGCTAGCATTG----GNTGA-G-CTATGAANTGATC----TAATG-CAGGCATTGGATCACTT----CG-CAGTC-GAC-GA-TGCNGGCATTGACA
Reference ( family-6305 ) : ACTCTGAACT--AATATTT--TTTT-GTC---TCA-A--T-ATTTTTT-CATAATAT-CGATC-AAT-TGTATTAA--------AGAGATTTGAAATGGAA-TAT-------TGACTTTTACACTCTCAAAATGATAAA-A----AC--G-GAGTTAAT-TT--ATCAT-AA-A-GTT---GTTGTTTT---AATCA--CA-TATGAGT--TATCCAGATT----GAAAAGGATTT-GGTTTA--A-TCTA-TGTAT-TTCACAAAAATGG-TCGGCG-AA-AGTTGGTATGG-AAACGTCAATGC-ACTGTTG-ATTATA--ATTG-TTTGCAACTTTTCATC-CA-TTTT----GCAATT-T-TTTT--AAATACT-AATTACAC----G-G-CG--CTTGAAATT-G--AGTA-TATG-TTT----TTGCGTAATGGAAA-TCCGATNAT---AAT-TATACAC-ATA-ACGT-GATT-T-ACATGAAG-GA--TTGAATGA--GTTATGCAATGCA-GCGACCCAC-TAACG-CGAAA-GA--AATACTTGCCATGGG-CA--T-TTTCGCAAAAGAATTTACAATA-TAGCGAAATCGTTTCA--TTTTAACGCCAATGCAGA-ATT-TATAACTAT---TTT--TTGGTGAATTNCAGCATG-ACCGTAGCTCTCTCGCTTGTAGCGA-ATCTCT--TAAN---TCGGTCATGCCAACGG-ACTGGGC-GC-G-AC-TCTCAAT---GGGACCAATA-TCGGCAGTAG-AA--CCACCTCGACT---ATTTCAAGAAGCCAATAACAGGCAATTACCCAACTCTGT--CACAAAAGCCAAT-GCCCGGC--GTTGGAGCCACTATTTCGNGAGAGCCAATGNNGGCTTTGGNTGAATATCTGAACAGCCGATTGCAGNNTTAGTATACTAGAGAATATCGATTTCNTCCGATGGCAGGCGTTGGGACGGTACGACGTCATCCAATGCAGCATTTTTATCTTCCTGCAGGCATTGNCTATACTATAAAGCCTGACTCAATGCAGGNATTGGNCCANTNNTGGCGTCGTCCAA---TGCAGG-CA---TTGGGCGA-------CTAC--AACT----GATTCCAATGC-AGGCATTGGGCCA--GTTATGG-GTCG-TCC--C--GCGNC-TT-TCG-----TA--AACT-GATTT--ATG-CGGGCGATTGG--CC-GA--TATGGC-GTCGT-C--AATGCAGGCAATTGGNCNACTNAANAATGGATTCAATGCAACGGCATTGGGNCTGAGTTATGGCGTGCCGTCCCAATGCAGGCATTGGGCGANTGCAAACCTGAATTCAAATGCAGNCATTGGNCNAGTATGCGTCTTCCCAATGCAGGCAATGGTTGACTAACAAACTGATTCAATGCAGGCATTTGGAGCAGTATGGCGTTNTCGAATGCAGGGCGTTGGGGCGACTGGCGNGAACTGATTNAGATNCAGGCATNGGACCANTGTGCGTCGTCCAAATGCTTGCATTGAGCGANTATACNTACNGANCCAAACTGNNGNCATTGGNACCAGTNTGGGCCCCGGGTGTGTCCAATGCNNGCATTCGAGCGGCTTGACTACAANTGATCTAATGCNNGCATCTGAACAGTATGGGTCGTCCAATGCTGCTATTGAAAGCGATACAAACTGTTTATGCANGNNTTNGGNNCANTNTGGCGTCNTCCAATGCAATGCATTCGGGCGNACTNTGACGTNATCCAACGCAAGGCAATTGGNNCATNNTGGCGTCGTNCAATTGCNNGCATTANGGCGAACTATAAANTGATTCAATG--ACAGGC---ATTGGA-CAGTAT--GGGCGTCGTCCAATGCAGGCATT-G-GCGAC-GTACAAA--CTGATTCAAT-GCAGGCATTGGACNAGTATGGC-GTCGTCCAATGCAGGCATTGG--GAG--TAACAA-----TGAT-----------------ATTC--AATGCAGGC---ATTGGCCGCGTATGGCGCCTT-----G--------CCAATG-CAGGCACTGGTTGAACT-ACGAAC-TGATTCAATGCAGGCATTGGAAC--C-AGT--AT-GGCGTCATTTAATGCTAGCATTG----GNTGA-G-CTATGAANTGATC----TAATG-CAGGCATTGGATCACTT----CG-CAGTC-GAC-GA-TGCNGGCATTGACA
gi|1 : ACTCTGAACCTAAATATTT--TTTT-GTC---TCA-A--T-ATTTTTT-CATAATAT-TGATC-CAT-TGTATTAA--------AGATATTTGAAATGGA--TAT-------TGACTTTTACACTCTCAAAA-GATAAA-A----AC--G-GAGTTAAT-TTTGATCAT-CA-A-ATT---GTTGTTTT---AATCA--TA-TATGAGT--TATCCAGATTTAATAAAAAGGATTT-GGTTTC--A-TCTA-TGTAT-TTAACAAAAATGGGTCGGCGCAA-AGTTGGTATGG-AAACTCTAATGC-ACTGTTGGATTATATAATTG-GTTGCAACTTTTTATC-CA-TTTT----GCAATT-TCTTTT--AAAAACT-AATTACAA----G-GGCT--CTTGAAATT-GTTAATA-TATG-TTT----TTGCGAAATGGAAA-CCGAATAAT---AAT-TATATTC-ATA-GCAT-GATT-T-ACATGAAG-AA--TTGAATGA--GTTATGGAATGCA-GCAACCCAC-TATCGACGAAAAGA--AATACT-GCCATGG--CA--T-TTTTGCAAAA-AATGGACAATA-TAGCGAAATCGTTTCAATTTTTATTGCCAAT-CAGACATT-TA-AACTAT---TAT--TTGATGAATACCAGCAT--ACCGTAGCTTTCGCGCTTGTAACGA-ATCTTTAGTAAGAATTCAATCA---CAGC----CTGGA--AT-G-AC-TTTCAAT---GA---CAATA-GTGGCAGTAG-AATACCACTCAGAAT---ATTTCAAGAA-CCAATAACAAACA-TTACCCCACTCTGT--CACAAAAGC--AT-GCCCGGC--GTTGGAGCCACTATTTCGC---AGCCAATGGAGGCTTTGGGTGAATA-CTGAACAACCAAT-GCAGCGTTAGTATACTAGA-AATAT-GATTTCATCAGATGGCAGGTGTTGGG--GGT-CGACATCATCCAATGTAGCATTTTTATCTTCCTGCAGGCATTGTCTATACTATAAA--CTGA-TCAATGCAGGCATTGGACCAGTCCTGGTGTCGTCCAA---TGCAGG-TAGGATTGAGCGA-------CTAC--AACT----GATTCCAATGC-ATGCATTGGACCA--GTTATGG-GTCGGTCC--CAAGCGAC------G-----TA--AACT-GATTTCCATG-CAGGCAATTGGAACC-AA--CAAGGC-GTCGT-CGAAATGC--GC--TTGAGCGACTAAAAAATGGATTCAATGCAACGGCATTGGGAC-GAGTTATGGCGTGTCGTCC-AATGCAGGTAT-GGGCGAGTACAAACCTGA-TTCAAATGCAGCCATTGGCCGAGTATGCGTCTTCCCAATGCAGGCAATGGTTGACTAACAAACTGATTCAATGCAGGCATTTGGAGCAGTATGG-GTTGTCGAATGCAGGGCATTGGGGCGACTGGTGTAAACTGATTGAAATGCAGGCATTGGACCAGTATGCGTCGTCCAAATGCTTGCATTGAGCGACTATACATACTGATTCAA--TGCAGGCATTGGAACCAGTATGGGCCCCGGGTGTGTCCAATGCAGGCATTC-AGCG----GACTACAACT-ATTTAATGCAGGCAT-TGAACAGTATGGGTCGTCCAATGCTGCTATTGAAAGCGATACAAACTGTTTATGTAGGATTTGGGACCAGTATGGCGTCGTCCA--GCAATGCATTCAAACGAACTATAAC-TGATTCAATGCAAGGC--TTGGACCATAATGGCGTCGTTCAATTGCTTGCATTAGAGCGAACAACAAAA-GATTCAATGAAAAAGGC---ATTGGA-CAGTATGGGGGCGTCGTCCAATGCAGGCATT-G-GCGACAGTA-AAA--CGGATTCCAT-GCAAGCATTGGCCTAGTATGACGGTCGTCCAATGCAGGCATGGG--GAG--TAACAA-----TGAT-----------------ATTCAAAATGCA-GC---ATTGGCCGTGTATGGCGCCT---------------CTAATG-CAGGCA-TAGTTGAAAT-ACAAACATGATTC-ATGCAGACATTAGAACCAC-AGT--ATGGGCGT-ATTT-ATACTAGCATTG----GCTTG-G-CTATGAAATGAT-----TAATGCCAGGCA-TGGATCACTTATAGAA-CAGTT-GAA-GG-GGAGGGCATTGACA
gi|10 : GAG-GAATATATCTACGAAACTAAACTGGCGCCATTGGCAC---TTTGAG------GTG-GTCCA-TGCCTGCATT-GAGCGGCTTGACTA-AAGTGATC--ATGCCTGCATCTGAA
gi|11 : TTGGCCCATTGTTGGCGTCGTCCAATTTTCTAGGCCA---TTGGCCGAATTCCATTTACTAAACTTGAAAATTTCAATACTAGGCATTTGGTCAATGTTATG--------CC--T--GCGCT-TT-TCA-----TATTAACTCAATTT---TG-CAGGCATTTGG--CCTGT--TATGGT-GTCAT-C--tctttatatcaatcaacagaattgcttttttgctcatcaaaaataaaaccgactaatttcttagtgttcattagagcattatgaattgtaataaaaatgag
gi|12 : ttcaatttgaatggctacA-A--T-ATTTT------AGTTT-AGATCTAAA-TGTTTTGA---------GTGATTTTAAATGAAA-TAT-------TGGCTTTTAC--TTTCAAAATGATAAA-A----AC--T-GAGTTAAT-TT--ATCAT-AA-G-A-----GTTGTTTT-----TCA--CA-CATGttataccctacatcagttgggct
gi|13 : atcactcaaaacattaagatcttataacttggacaatCTCTGAACT--ATTTTCT--TTTT-GTC----CA-AATT-ATTTTTT-CATAATATTCGATC-AAT--GTATTAA---------GAGATTTGAAAAGGAA-TAT-------TGACTTTT--ACTCTCAAAATGATAAA-A----ACTAGTAAGTTAAT-TT---------G-A-GTT---GT--TTTT---AAT----CA-TATGAGT--TAcac
gi|15 : tgcgATGGCGTTTTCGAATGCA-GGCGTTG----AAC--GC-AGAACTGATTCAGATTC-GACATAAGACCACTGTG
gi|16 : tggATG-CAGGCGCTGGTCGA-CT-ATGAAC-TGATTCACTGCAGGCATTGG
gi|17 : ccCTTTTAC--TCTCGAAATGATAAA-A----AC--T-GAGTTGAT-TT--ATCAT-AAGA-GTT---Ggcg
gi|2 : ACTCTGAATT--AA-ATTT--TTTT-GTCAAATTA-T--T-TTTTTTT-TATATTAA-CAATC-AAT-GGTATTAAT-------AGA-ATTTGAA-TGGAA-TATCATGTATTGACTTTC-TACTCTCAA--TGATAAATA----AC--G-AAGT--AT-TT--ATCAT-AA-A-GT-------GTTTT---AATCAATCAATGTG-GT--TATC-AGATT----GAAG-GAATTT-GGTTTA--A-TCTA-TGTAT-T-CACAAAAATGG-TCGG-G-AACAGTTGGTATGG-AAACGTCAATGT-ACTGTTG-ATCATA--ATTG-TTTGCCACTGTTCAT--CA-TTTTGGCCGCAATTAT-TTTT--AA--ACT-AATTACAT----GTG-CG--CTTGAAATTCG--TATG-TATGTTTT----TTGCGTAATGGAAA-TCCGATCAT---AAT-TTAACACGATA-TCATCGATT-TAATATG-AG-GA--TTGAATGA--CTTA-GCAATGCACGCGACCAACTTAATA-TGAAA-AATGAATGC-TGCCATGGG-TATTT-TTTCGGCAAAGAA-TTACAATACTAAGAAAATCG-TTCA--TTTTAACGTCAATGCAGA-AAT-T-TAACTAT---TTT--TT-GTCAATTACAGCATG-ATCGT-GCT---TCGCTTGTAGAGA-ATCTCT--TCTC---TCGGTCATGCCAACAG-ACTGGGTGGC-G-ACATCTC-AT---TGGACCAATA-T-GGCAGTAGCAA--CCACCTCGACT---ATTTCAAGAAGCCAATATGAGGC-ATTA-CCAACTCTGT--CAC--AAGCCAATCGCAGGCC--ATTGGA-CCAC-ATTTCAAGAGAG-CAATGCTG--TTTGGTTGAATATCTGAACAGCCGATTGCAGGTTTAG-------GAGAATATCAATTTCTTTCAAT-GCAGGCGTTGGGAC---ACAA-GTCATCCAATGC--CA-----------------GCATTGGTTATA-TATAAAGCTTGACTCAATGC-GGAATTGGGCCCATTATGGCGGCGTCC-A---TG-AGG-CA---TT-GGCGAT------CTAC--AACT----GATTCATATGCAAGGCATTGGG-CA--G--ATGGCGTCG-TCCAAT--GCGGCATTGTCAGCTGTTA--AACT-GATTC--ATGACGGGCGATTGG--CC-AAGTTTTGGCGGTCGTAC--AATGCAGGCAATTGGTCTACTTAAC--T-GATTCAATGCA--GGCATTGGGCCTG---TATGGCAT-CCGTCCCAATGCAGGCATTGGGCGACTGTAAA-CTGAATTC-AATGCAGGCATTGGGCCAGTATGCGc
gi|3 : cTATTTCATTTC-GCA---TTA-G--T-GCTTGCTGCATTGCAT-CGATC-A-T-TATATTTA--------AGATATTTGAAATGGAACTAT-------GTACTTTTAC--TCCCAAAATGATAAA-A----ACT-G-AAGTTAATCTT--ATTAT-AA-AAGTT-----TGTTTT---AATCA--CT-TATGAGTATTATC-AAATT----GAAAAGGATTTTGGTTTA--AATCTAATGTAC-TTCACAAAAATGG-TCAGCG-AA-AGTTGGTATGGAAAACATCAATGCGATCGTTG-ATTATA--ATTGTTTTGCAACTTTTCATCGCATTTTT----GCAATT-C-TTTT--ATTTGCTAAATGACACCAGTG-G-CGCACTTGAAATT-T--AGTATTATG-TTT----TTGCGTAATGGACATTCCGATAGTATGAATATATGTAC-ATATACAT-GATT-T-AAATGAAG-GAATTTGAATGACCGCTTTGCAATGCA-GCAG--CAC-TAATG-CGAAT-GA--AATACTTGCGATGGGTCA--TGTTTCGCAAAAGAATTTACAA-A-TAGCAAAATCTTTTCA---TTTAAAGCCAATGCAGA-TTTATATAACTATATCTTTGATTGGTGGCTTTAAGCATGTACTATATCTCTCTC--------CGAGATC------AAA-------CCATGC--ACGATACT-GGC-GCTGTACTTCTCAATGCCGGGATCAATACTCGGCAGTAG--A--CCA-CTCGACTTAAATTTCAA-AAGCCAACTACAGGCAATTACCCAACTCTGTCCCACAAAAGCCAAT-G-CTGGCTTATTGGcgcgtaataatgc
gi|4 : g-CAGTAT--GG-CGTCGTCCAATGCAGGCATTCG-GCGAC--TACAAA--CTGATTCAAT-GCAGGCATTGGACCAGTATGGC-GTCATCCAATGCAGACATTGG--GCGACTAA-AC-----TGATCGGCCGAGTATGGCGTAATTC--AATGCAGGC---ATTGGCCGAGTATGGAGTCGT--------------CCAATG-CAATCACTGGGTG-ACT-ATGAAC-TGATTCAATGCAGGCATCGT--C--CGACT--AT-GAAGTGATTTAATGTAGGCATTAATTTGGTGA-A-CTATAGAGTCGTC----CAATG-CAGGCACT-GACCGACT----CGAAAGTC-GTC-CAGTGCAGGCATTTACA
gi|4 : ggccTC-----G--------TCAATGTCAGGATTTGGTTTA-CT-TTAAAA-TG--TAAATGCCTGCACTGGA-C--G-ACT--TT-CGAGTCGGTCAGTGCCTGCATTG----GACGA-CTCTAT-AGTTCACCAAATTAATG-CCTACATTAAATCACTT----CA-TAGTCGGAC-GA-TGCCTGCATTGAttttaaagtaaaccaaatcctgacattgacgaactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|5 : ggcccagtatggcgtcgtccaatgcaggcattcggcgactacaaactgattcaatgcaggcattggaccagtatggcgtcatccaatgcagacattgggcgactaaactgatcggccgagtatggcgtaattcaatgcaggcattggccgagtatggagtcgtccaatgcaatcactgggtgactatgaactgatTGCATGTATTTGGCATATTCTGACGTCCTCCAATGCA-TGTATT-GGGCATATTCTGACGTCATCCAACGC-AGGTAATTGGCATATTCTGACGTCATGCAA-TGCAGGTATT-TGGCAAATTCTAAAGTCATTCAAT---ACAGACGTTACTAGA-C--TTT--GAA-GTCGTTCAATG--G--ATT-T-GC-----TTCAGAATCTG--TTAAT-GCCCGCATTGGATAACTTTAGA-GTAAAACAATGCATGCACTGA--GAA--AAAGAA-----Tactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|6 : ACTATAAACTGATTTAATG---CAGGC---ATTGGACCAGTAT---GGCGTCATCCAATGCAGACATT-G-GC--C-G-----A--CT-AT---ATAGCAGGCAATGGCCGAATATGGT-GTCATTCAATGCAGGCATTG---------AACAACGCTTTGAT-----------------ACTC----TGCTGA----ATT-GCAATGTAT----CTTTCAACAG--------CCAATG-CATGCACTGGATGAAcgaacgacgcccgttctaggagaacattatantagagtaaaacaatgcatgcactgagaaaaatagtcaaacgacgcccgttctaggagaacattatgtgtacttgttccagcatttagacattaagacaaaaatgtatagtctaagttaaagtctaagttaattgcattcaggtacacaagtaaaatgttttcagcattttctcaaagtacattcaaatattcttaacttgaaaatactcttctaaaaaatacgctgatttgattttttttttttcaatttgctaaaacgtccattgaaattgctgaaaattttcgctagaattatgacagtgcgctagtgctttgcgatcgtaacaatttataacacataccgaaagttcgttattcaatttcaaaaatggat
gi|7 : tgAGTAT--GG-CGTCGTTCAATGCTTGCATA-GAGCGAC--TACAAA--ATGATTCAAT-GAAGGCATTGGACCAGTATGGC-GTCGTCCAATGCAGGCATTGGGCGAG--T-ACAAAT---TG-------------------ATTC--AATGCAGCC---ATTGGCCGTGTATGGCGTCCT--------------CTAATG-CAGGCATTAGTTGAA-T-ACAAAC-TGATTCAATGCAGACATTAG-AC--C-AGT--AT-GGCGTCATTTACTACTAGCATTG----GCTG--G-CTATGAACTGATT----CAATG-CAGGCATTGGATCACTT----TGTCAGGA-GCC-AA-TGCAGGCATTGtatctcatattggcctactttctcaggagccacatgcaattgcatgcctcaaataaacgtgtaccttaggacaatgcagacagtagtttacttttttcagagtcaatgaaagtattgatagaagcaaagctgagatagaatgacctgacatttgaggtctatgccttcttcagagtcattgcaagcactgaacttcttcctatgtgcagttagttcaagcattgcatgaccttctatctacagccaaagcagacggattta
gi|7 : --GAG--GAA-AA-----T-AT-----------------ATCT--AACG-AAACTAAACTGGCCGCA-ATGGCACTTT-----GAGAGTAGTCCAATG-CCTGCATTGGCTC--CTGACAAAG-TGATCCAATGCCTGCATTG-AAT--C-AGTTCAT-AGC--CAGCCAATGCTAGTAGTA----AATGACG-CCAT--ACTGGTC----TAATG-TCTGCATTGAATCAGTT----TG-TATTC-AACTAA-TGCCTGCATTgactactctcaaagtgccattgcggccagtttagtttcgttagatatattttcctcttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|8 : agtatggcgtcgttcaatgcttgcatagagcgactacaaaatgattcaatgaaggcattggaccagtatggcgtcgtccaatgcaggcattgggcgagtacaaattgattcaatgcagccattggccgtgtatggcgtcctctAA-TAT-------TGGCTTT-A-ACTCTCAAAATGATAAA-AGAAAAT--T-TAGTTATT-TT--ATCATGAA-A-GTT---GTT--TTT---AATTA--CA-C--GGGT---A--CATAAT----GTAAA---TAT-GGTTTGCCA-TATA-CACATATTCACTGAAATGA-CCAGCG-AA-AGTTGGCATGG-AAACATCAACGT-ACTGTTG-ATAAT---ATTT-TTAACAGCTTATAA-C-CA-GTTT----GCAATG-T-TTTTGCGAATAAT-AATT----------G-CG--TTTGAAATC-G--GG-A-TATA-TTTGCCGTAGCGTAAT-TAAA-TCCGTTCAC---AAT-TA-ACAC-CGA-ATGT-GATTAA-ACATGAGGAAA--TTGAATGA--GTT-TACAATACA-CCGA-CCAC-TAttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|9 : aTCGGAACT--AATTTTT--TTTTTGT----TCATA--TCATTTTTT-TATAATATACAACC-AATGTTTCTCAATACTATTGAGAGATTTGCAATGGAA-TAT-------TGACTTTTAC--TCTCAAAATGATAAA-A----AC--T-GAGTTAAT-TT--ATCAT-AA-A-GTTTTGGTTTTTTTTTAAAT----TA-TATAAGT--TAT-CAGATT----G-AAAGGATAT-GGTTTA--A-TCTA-TGTA--TTCACAAAAAT
blockSeqs : . TT CA T CAAATTAT C T G T T GT TACTATTGA G C CATGTAT TAC T GAAA TAGT C . G G A TTTGGTTT TTA CAAT A A AT TC . A T T CC A A TA . C . C A G G . C A T TCG T GGCC AT GCGAAT A A CCAGTG . CA CGTATG T GCCG G T C ATG A A G TA A C TA A A AT CC TT C C T . . TG TT GTATTT G T T C T T C G TTTATAT ATC GA G A GT A C G G G TCTTCTCTCGGTCATGCCAACAGACTGGGTGGCGACA A GCCGGGAT CTC CAA C TAA G G AA C CC A C C CAG TTA . . AGAG . CT . T T T GT . G C T C . ACA . . . G . GC C . A C T GT A TTTTCT C . G ATTCCAT TA TGAA T T AT T GCGTCGTCCAATGCGGCATTGTCAGCTGTTA C A A . AAGT G AC AG AA T T T CT . C TG . C T C . A . G G C C T . AACGCA C T . A C . A C G A AC GC C C . T . . . CT G GCTT . G G . CT C T TA T CA T C C AT . . T C G C . AA CA TC G . AG T GT A GTT C GAA A G CG GACTAC AT A C . GGCGACTAAACTGATCGGCCGAGTATGGCGTA A AACTAA A TGAGAGTAGT T C AC G . TCCG TC . G ATTTGGTGAA A G CAAAT . C A CGAA G T CAG A
blockSeqs : . TA . . CCAAAT . T . A . T TA G . . AAC . . TG . . . . . GTTG . CA . A . TC . A T . . . . T . C . . . A . . T A . T . . C ATTT . A TGT . . TAGTAT . . G . A . . T . T A . AA A . . . A . . . . . . T GTCATG G . . . . . A G AATTT . . . T G . . . . . AAACCATGCACGATACTGGCGCTGTACT . TGGAC T A . . . G A . . . C . CT A G A TA . TG . . . T . . A . . . CCTGCGCTTTTCATATT . . . . TGT . C CT G . . GG A A GA GACTAC . . A . GGCGAGTACAAATTG A GGC T TCAACAG . C AC . . GACG . . C GACGACT G T C . T G TGTC . A TAA C
blockSeqs : . TT . . ATTAG . C . . . G A T . . AC . . T . . . . . TGTT . CA . G . TC . T A . . . . C . . . . . A . . A . . C . . T AA . . . . . GGGA . . . . C . . . . A G . T . . . . T . . . . GG T G T TTC . . G . AACAACGCTTTGAT A GCC T CG . T AC . . GACC . . C AATGACG . C T . T G CAT . C GA A
blockSeqs : A . . TCATA . T . . . T . G . . AC . . T . . . . . TGT . TA . A . C . . A . . . . . GG . . G CG . . C . . GA C T . C AA . . AATC . . C GCTGG . C C . T . TGT . A AA C
blockSeqs : . . . . . . . . . . AC . . G . . . . . TTG . . . . . T . T C . .
blockSeqs : . . AC . . T . . . . . G . . . . T
blockSeqs : AC . . T . . . . .
blockSeqCons : A******** AC** ** TTG***** TC* **** GG*** GTC***** A** GAC*** T************** AC* GACG**** GNCGAN****** C**** CGT*****
originalCons : ACTCTGAACT--AATATTT--TTTT-GTC---TCA-A--T-ATTTTTT-CATAATAT-CGATC-AAT-TGTATTAA--------AGAGATTTGAAATGGAA-TAT-------TGACTTTTACACTCTCAAAATGATAAA-A----AC--G-GAGTTAAT-TT--ATCAT-AA-A-GTT---GTTGTTTT---AATCA--CA-TATGAGT--TATCCAGATT----GAAAAGGATTT-GGTTTA--A-TCTA-TGTAT-TTCACAAAAATGG-TCGGCG-AA-AGTTGGTATGG-AAACGTCAATGC-ACTGTTG-ATTATA--ATTG-TTTGCAACTTTTCATC-CA-TTTT----GCAATT-T-TTTT--AAATACT-AATTACAC----G-G-CG--CTTGAAATT-G--AGTA-TATG-TTT----TTGCGTAATGGAAA-TCCGATNAT---AAT-TATACAC-ATA-ACGT-GATT-T-ACATGAAG-GA--TTGAATGA--GTTATGCAATGCA-GCGACCCAC-TAACG-CGAAA-GA--AATACTTGCCATGGG-CA--T-TTTCGCAAAAGAATTTACAATA-TAGCGAAATCGTTTCA--TTTTAACGCCAATGCAGA-ATT-TATAACTAT---TTT--TTGGTGAATTNCAGCATG-ACCGTAGCTCTCTCGCTTGTAGCGA-ATCTCT--TAAN---TCGGTCATGCCAACGG-ACTGGGC-GC-G-AC-TCTCAAT---GGGACCAATA-TCGGCAGTAG-AA--CCACCTCGACT---ATTTCAAGAAGCCAATAACAGGCAATTACCCAACTCTGT--CACAAAAGCCAAT-GCCCGGC--GTTGGAGCCACTATTTCGNGAGAGCCAATGNNGGCTTTGGNTGAATATCTGAACAGCCGATTGCAGNNTTAGTATACTAGAGAATATCGATTTCNTCCGATGGCAGGCGTTGGGACGGTACGACGTCATCCAATGCAGCATTTTTATCTTCCTGCAGGCATTGNCTATACTATAAAGCCTGACTCAATGCAGGNATTGGNCCANTNNTGGCGTCGTCCAA---TGCAGG-CA---TTGGGCGA-------CTAC--AACT----GATTCCAATGC-AGGCATTGGGCCA--GTTATGG-GTCG-TCC--C--GCGNC-TT-TCG-----TA--AACT-GATTT--ATG-CGGGCGATTGG--CC-GA--TATGGC-GTCGT-C--AATGCAGGCAATTGGNCNACTNAANAATGGATTCAATGCAACGGCATTGGGNCTGAGTTATGGCGTGCCGTCCCAATGCAGGCATTGGGCGANTGCAAACCTGAATTCAAATGCAGNCATTGGNCNAGTATGCGTCTTCCCAATGCAGGCAATGGTTGACTAACAAACTGATTCAATGCAGGCATTTGGAGCAGTATGGCGTTNTCGAATGCAGGGCGTTGGGGCGACTGGCGNGAACTGATTNAGATNCAGGCATNGGACCANTGTGCGTCGTCCAAATGCTTGCATTGAGCGANTATACNTACNGANCCAAACTGNNGNCATTGGNACCAGTNTGGGCCCCGGGTGTGTCCAATGCNNGCATTCGAGCGGCTTGACTACAANTGATCTAATGCNNGCATCTGAACAGTATGGGTCGTCCAATGCTGCTATTGAAAGCGATACAAACTGTTTATGCANGNNTTNGGNNCANTNTGGCGTCNTCCAATGCAATGCATTCGGGCGNACTNTGACGTNATCCAACGCAAGGCAATTGGNNCATNNTGGCGTCGTNCAATTGCNNGCATTANGGCGAACTATAAANTGATTCAATG--ACAGGC---ATTGGA-CAGTAT--GGGCGTCGTCCAATGCAGGCATT-G-GCGAC-GTACAAA--CTGATTCAAT-GCAGGCATTGGACNAGTATGGC-GTCGTCCAATGCAGGCATTGG--GAG--TAACAA-----TGAT-----------------ATTC--AATGCAGGC---ATTGGCCGCGTATGGCGCCTT-----G--------CCAATG-CAGGCACTGGTTGAACT-ACGAAC-TGATTCAATGCAGGCATTGGAAC--C-AGT--AT-GGCGTCATTTAATGCTAGCATTG----GNTGA-G-CTATGAANTGATC----TAATG-CAGGCATTGGATCACTT----CG-CAGTC-GAC-GA-TGCNGGCATTGACA
finalCons : ACTCTGAACT--AATATTT--TTTT-GTC---TCA-A--T-ATTTTTT-CATAATAT-CGATC-AAT-TGTATTAAA--------GAGATTTGAAATGGAA-TAT-------TGACTTTTAC--TCTCAAAATGATAAA-A----AC--G-GAGTTAAT-TT--ATCAT-AA-A-GTTTG-----TTTT---AATCA--CA-TATGAGT--TATC-AGATT----GAAAAGGATTT-GGTTTA--A-TCTA-TGTAT-TTCACAAAAATGG-TCGGCG-AA-AGTTGGTATGG-AAACGTCAATGC-ACTGTTG-ATTATA--ATTG-TTTGCAACTTTTCATC-CA-TTTT----GCAATT-T-TTTT--AAATACT-AATTACAC----G-G-CG--CTTGAAATT-G--AGTA-TATG-TTT----TTGCGTAATGGAAA-TCCGATNAT---AAT-TATACAC-ATA-ACGT-GATT-T-ACATGAAG-GA--TTGAATGA--GTTATGCAATGCA-GCGACCCAC-TAACG-CGAAA-GA--AATACTTGCCATGGG-CA--T-TTTCGCAAAAGAATTTACAATA-TAGCGAAATCGTTTCA--TTTTAACGCCAATGCAGA-ATT-TATAACTAT---TTT--TTGGTGAATTNCAGCATG-ACCGTAGCTCTCTCGCTTGTAGCGA-ATCTCT--TAAN---TCGGTCATGCCAACGG-ACTGGGC-GC-G-AC-TCTCAAT---GGGACCAATA-TCGGCAGTAG-AA--CCACCTCGACT---ATTTCAAGAAGCCAATAACAGGCAATTACCCAACTCTGT--CACAAAAGCCAAT-GCCCGGC--GTTGGAGCCACTATTTCGNGAGAGCCAATGNNGGCTTTGGNTGAATATCTGAACAGCCGATTGCAGNNTTAGTATACTAGAGAATATCGATTTCNTCCGATGGCAGGCGTTGGGACGGTACGACGTCATCCAATGCAGCATTTTTATCTTCCTGCAGGCATTGNCTATACTATAAAGCCTGACTCAATGCAGGNATTGGNCCANTNNTGGCGTCGTCCAA---TGCAGG-CA---TTGGGCGA-------CTAC--AACT----GATTCCAATGC-AGGCATTGGGCCA--GTTATGG-GTCG-TCC--C--GCGNC-TT-TCG-----TA--AACT-GATTT--ATG-CGGGCGATTGG--CC-GA--TATGGC-GTCGT-C--AATGCAGGCAATTGGNCNACTNAANAATGGATTCAATGCAACGGCATTGGGNCTGAGTTATGGCGTGCCGTCCCAATGCAGGCATTGGGCGANTGCAAACCTGAATTCAAATGCAGNCATTGGNCNAGTATGCGTCTTCCCAATGCAGGCAATGGTTGACTAACAAACTGATTCAATGCAGGCATTTGGAGCAGTATGGCGTTNTCGAATGCAGGGCGTTGGGGCGACTGGCGNGAACTGATTNAGATNCAGGCATNGGACCANTGTGCGTCGTCCAAATGCTTGCATTGAGCGANTATACNTACNGANCCAAACTGNNGNCATTGGNACCAGTNTGGGCCCCGGGTGTGTCCAATGCNNGCATTCGAGCGGCTTGACTACAANTGATCTAATGCNNGCATCTGAACAGTATGGGTCGTCCAATGCTGCTATTGAAAGCGATACAAACTGTTTATGCANGNNTTNGGNNCANTNTGGCGTCNTCCAATGCAATGCATTCGGGCGNACTNTGACGTNATCCAACGCAAGGCAATTGGNNCATNNTGGCGTCGTNCAATTGCNNGCATTANGGCGAACTATAAANTGATTCAATG--ACAGGC---ATTGGA-CAGTATGG---CGTCGTCCAATGCAGGCATT-G-GCGTC-----AAA--CTGATTCAAT-GCAGGCATTGGACNAGTATGGC-GTCGTCCAATGCAGGCATTGG--GAG--TAACAA-----TGAT-----------------ATTCA--ATGCAGAC---ATTGGCCGCGTATGGCGCCTT--------------CCAATG-CAGGCACTGGTTGAC-T-ACGAAC-TGATTCAATGCAGGCATTGGACG----AGT--AT-GGCGTCATTTAATGCTAGCATTGGNCGAN------CTATGAANTGATC----TAATG-CAGGCATTGGATCACTTCGT-----AGTC-GAC-GA-TGCNGGCATTGACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GCAAGTTGCCTCAGAGTTATTTGCAATCGTTATAACAATAAGACATTTATTATAAATAATGTGTTCAAATAAAGTAGTTTTTGGATAATATTAAAAAATCAGGATTGGGCATAAAATATTTTGTCACACT
Unaligned ( gi|18 ): GGTCTCTTCTAAATCTGTTAACGATATGGTCAAGGTATTTAGGGAC
Alignments
lowQualScore : 11 11 22222222222 1 333333333 1111111 1111 1111 11111 111111 1111 1111 11 11 1 1 1 1 1 1 111 1 111 1 2222 111 111111 1 3333333 1 11 222222222 1 2222 1 111 1 1 11 1 111 1 11 11 11 1 1 1 1 1 11 11 22222222 1 222 22222222 222 11 22 1 1 777777777777777777777777777777777777777777777 22222222 222 33333 222 11 11 1 111 1 1 2222 1 11 1 1 3333333 1 1 1 555555 1 11 66666666666666666 1 11 1 1 222222 1 222 5555555 11 2222 2 1 11 777777777777777777777777777777777777 1 222 1 11 33333 1 1 11 1 222 11 22 222222 2 111 1 1 1 1 1 2222222222222 1 1 11 222 222222 1 1 33 2222 1 1 11 1 11 1 1 1 1 11 1 11 3333 222 111 111 555555555 11 666666666666666666666666666666666666666 111 22222 555555555 11111 11 1 33333333333 1 444444444 1111
lowQualScore : 33 22 11 8 00000000000 6 1 6 0 3 6 99 888888888 6 5 8888888 5 66 5 0000 9999 5 66 5 5 5 66666 666666 2222 5 0 1 99 0 8 7777 6 0 1 8 11 8 8 11 0 0 2 0 0 0 4 0 0 1 777 0 0 555 0 1111 444 999999 0 3 4444444 0 33 777777777 0 1111 2 0 1 777 0 9 0 11 2 0 777 0 3 0 33 33 33 0 5 0 0 3 3 88 44 99999999 6 7 7 3 0 7 555 3 6 22222222 333 88 6 1 00 7 2 6 3 3 777777777777777777777777777777777777777777777 7 66666666 444 00000 6 333 6 6 44 6 88 7 6 3 888 999 5 5 1111 5 22 77 1 5 5 22 3333333 5 5 1 2 5 444444 5 88 00000000000000000 1 5 77 5 5 1 1 1 22 7 444444 3 333 6 6666666 88 8888 6 2 88 7 444444444444444444444444444444444444 3 555 3 0 0 88 22222 3 0 33 3 7 111 1 1 1 88 33 22 777777 7 3 111 7 1 5 5 5 1 1 1 5 1 5 3333333333333 1 1 5 1 1 5 1 1 1 1 88 22 1 1 000 1 777777 5 5 22 00 3333 5 1 5 88 22 5 1 22 1 22 1 1 1 88 5 5 1 1 5 1 5 88 22 22 1 5 22 66 88 2222 333 88 444 1 3 111 555555555 0 11 0 0 0 8 0 1 8 3 000000000000000000000000000000000000000 111 22222 4 0 8 555555555 1 3 1 6 2 6 8 0 55555 33 0 2 8 3 66666666666 77 1 6 0 7 2 2 000000000 0 3 9999 1
lowQualScore : .. .. .. . ........... . . . . . . .. ......... . . ....... . .. . .... .... . .. . . . ..... ...... .... . . . .. . . .... . . . . .. . . .. . . . . . . . . . . ... . . ... . .... ... ...... . . ....... . .. ......... . .... . . . ... . . . .. . . ... . . . .. .. .. . . . . . . .. .. ........ . . . . . . ... . . ........ ... .. . . .. . . . . . ............................................. . ........ ... ..... . ... . . .. . .. . . . ... ... . . .... . .. .. . . . .. ....... . . . . . ...... . .. ................. . . .. . . . . . .. . ...... . ... . ....... .. .... . . .. . .................................... . ... . . . .. ..... . . .. . . ... . . . .. .. .. ...... . . ... . . . . . . . . . . . ............. . . . . . . . . . . .. .. . . ... . ...... . . .. .. .... . . . .. .. . . .. . .. . . . .. . . . . . . . .. .. .. . . .. .. .. .... ... .. ... . . ... ......... . .. . . . . . . . . ....................................... ... ..... . . . ......... . . . . . . . . ..... .. . . . . ........... .. . . . . . . ......... . . .... .
lowQualScore : 88 22 00 0 99999999999 7 7 7 3 3 7 88 222222222 7 7 6666666 0 99 0 6666 4444 0 99 0 0 0 00000 444444 3333 7 1 7 22 8 0 0000 0 8 4 0 00 0 0 88 8 0 5 0 0 0 2 0 0 2 000 0 2 888 0 2222 888 222222 0 2 0000000 0 88 222222222 0 2222 5 0 0 555 0 8 0 22 0 0 555 2 2 0 88 88 00 0 0 0 7 3 3 33 77 00000000 7 3 3 3 7 3 777 7 7 77777777 333 33 7 0 00 3 0 7 7 3 333333333333333333333333333333333333333333333 3 33333333 333 00000 7 333 7 7 77 7 33 3 7 3 777 000 0 5 5555 0 00 55 0 5 5 00 0000000 0 0 0 5 0 000000 0 00 55555555555555555 0 0 55 0 5 0 0 0 00 3 777777 3 333 7 7777777 33 3333 7 0 33 3 777777777777777777777777777777777777 3 777 3 7 7 33 00000 3 0 88 3 3 777 0 0 0 33 33 77 000000 3 3 777 3 0 0 5 5 0 0 0 0 0 0 5555555555555 0 0 5 0 0 0 0 0 0 0 00 00 0 0 555 0 555555 5 5 00 00 5555 0 0 0 55 00 0 0 00 0 00 0 0 0 55 5 0 0 0 0 0 5 55 00 00 0 5 00 55 33 3333 333 88 000 0 2 000 888888888 8 00 8 8 6 0 6 0 0 2 111111111111111111111111111111111111111 888 66666 6 8 6 000000000 0 7 8 7 5 7 0 8 44444 88 0 5 8 2 55555555555 22 0 5 0 0 5 5 888888888 2 5 0000 0
consensus : ACTCTGAACT--AATATTT--TTTT-GTC---TCA-A--T-ATTTTTT-CATAATAT-CGATC-AAT-TGTATTAA--------AGAGATTTGAAATGGAA-TAT-------TGACTTT-TAC--TCTCAAAATGATAAA-A----AC--G-GAGTTAAT-TT--ATCAT-AA-A-GTT--T--GTTTT------AATCA--CA-TATGAGT--TATC-AGATT----GAAAAGGATTT-GGTTTA--A-TCTA-TGTAT-TTCACAAAAATGG-TCGGCG-AA-AGTTGGTATGG-AAACGTCAATGC-ACTGTTG-ATTATA--ATTG-TTTGCAACTTTTCATC-CA-TTTT----GCAATT-T-TTTT--AAATACT-AATTACAC----G-G-CG--CTTGAAATT-G--AGTA-TATG-TTT----TTGCGTAATGGAAA-TCCGATNAT---AAT-TATACAC-ATA-ACGT-GATT-T-ACATGAAG-GA--TTGAATGA--GTTATGCAATGCA-GCGACCCAC-TAACG-CGAAA-GA--AATACTTGCCATGGG-CA--T-TTTCGCAAAAGAATTTACAATA-TAGCGAAATCGTTTCA--TTTTAACGCCAATGCAGA-ATT-TATAACTAT---TTT--TTGGTGAATTNCAGCATG-ACCGTAGCTCTCTCGCTTGTAGCGA-ATCTCT--TAAN---TCGGTCATGCCAACGG-ACTGGGC-GC-G-AC-TCTCAAT---GGGACCAATA-TCGGCAGTAG-AA--CCACCTCGACT---ATTTCAAGAAGCCAATAACAGGCAATTACCCAACTCTGT--CACAAAAGCCAAT-GCCCGGC--GTTGGAGCCACTATTTCGNGAGAGCCAATGNNGGCTTTGGNTGAATATCTGAACAGCCGATTGCAGNNTTAGTATACTAGAGAATATCGATTTCNTCCGATGGCAGGCGTTGGGACGGTACGACGTCATCCAATGCAGCATTTTTATCTTCCTGCAGGCATTGNCTATACTATAAAGCCTGACTCAATGCAGGNATTGGNCCANTNNTGGCGTCGTCCAA---TGCAGG-CA---TTGGGCGA-------CTAC--AACT----GATTCCAATGC-AGGCATTGGGCCA--GTTATGG-GTCG-TCC--C--GCGNC-TT-TCG-----TA--AACT-GATTT--ATG-CGGGCGATTGG--CC-GA--TATGGC-GTCGT-C--AATG-CAGGCA-TTGGTCTACTTAAAAATGGATTCAATGCA-CGGCATTGGGCC-GA-TTATGGCGT-CCGTCCCAATGCAGGCATTGGGCGACTGCAAACCTGAATTCAAATGCAGNCATTGGNCNAGTATGCGTCTTCCCAATGCAGGCAATGGTTGACTAACAAACTGATTCAATGCAGGCATTTGGAGCAGTATGGCGTTNTCGAATGCAGGGCGTTGGGGCGACTGGCGNGAACTGATTNAGATNCAGGCATNGGACCANTGTGCGTCGTCCAAATGCTTGCATTGAGCGANTATACNTACNGANCCAAACTGNNGNCATTGGNACCAGTNTGGGCCCCGGGTGTGTCCAATGCNNGCATTCGAGCGGCTTGACTACAANTGATCTAATGCNNGCATCTGAACAGTATGGGTCGTCCAATGCTGCTATTGAAAGCGATACAAACTGTTTATGCANGNNTTNGGNNCANTNTGGCGTCNTCCAATGCAATGCATTCGGGCGNACTNTGACGTNATCCAACGCAAGGCAATTGGNNCATNNTGGCGTCGTNCAATTGCNNGCATTANGGCGAACTATAAANTGATTCAATG--ACAGGC---ATTGGAC-AGTAT---GGCGTCGTCCAATGCAGGCATT-G-GC----GACTACAAA--CTGATTCAAT-GCAGGCATTGGACNAGTATGGC-GTCGTCCAATGCAGGCATTGGG--AG--TAACAA-----TGAT-----------------ATTC--AATGCAGAC---ATTGGCCGCGTATGGCGCCTT-A-------CCAATGCAGGCACTGGNTG-ANT-ACGAAC-TGATTCAATGCAGGCATTGGA--CG-AGT--AT-GGCGTCATTTAATGCTAGCATTG----GNTGA-GCTATGAANTGGTCCAATG-CAGGCATTGGATCANTT----CG-T-AGTCGNC-GA-TGCGGGCATTGACA
Reference ( family-6305 ) : ACTCTGAACT--AATATTT--TTTT-GTC---TCA-A--T-ATTTTTT-CATAATAT-CGATC-AAT-TGTATTAA--------AGAGATTTGAAATGGAA-TAT-------TGACTTT-TAC--TCTCAAAATGATAAA-A----AC--G-GAGTTAAT-TT--ATCAT-AA-A-GTT--T--GTTTT------AATCA--CA-TATGAGT--TATC-AGATT----GAAAAGGATTT-GGTTTA--A-TCTA-TGTAT-TTCACAAAAATGG-TCGGCG-AA-AGTTGGTATGG-AAACGTCAATGC-ACTGTTG-ATTATA--ATTG-TTTGCAACTTTTCATC-CA-TTTT----GCAATT-T-TTTT--AAATACT-AATTACAC----G-G-CG--CTTGAAATT-G--AGTA-TATG-TTT----TTGCGTAATGGAAA-TCCGATNAT---AAT-TATACAC-ATA-ACGT-GATT-T-ACATGAAG-GA--TTGAATGA--GTTATGCAATGCA-GCGACCCAC-TAACG-CGAAA-GA--AATACTTGCCATGGG-CA--T-TTTCGCAAAAGAATTTACAATA-TAGCGAAATCGTTTCA--TTTTAACGCCAATGCAGA-ATT-TATAACTAT---TTT--TTGGTGAATTNCAGCATG-ACCGTAGCTCTCTCGCTTGTAGCGA-ATCTCT--TAAN---TCGGTCATGCCAACGG-ACTGGGC-GC-G-AC-TCTCAAT---GGGACCAATA-TCGGCAGTAG-AA--CCACCTCGACT---ATTTCAAGAAGCCAATAACAGGCAATTACCCAACTCTGT--CACAAAAGCCAAT-GCCCGGC--GTTGGAGCCACTATTTCGNGAGAGCCAATGNNGGCTTTGGNTGAATATCTGAACAGCCGATTGCAGNNTTAGTATACTAGAGAATATCGATTTCNTCCGATGGCAGGCGTTGGGACGGTACGACGTCATCCAATGCAGCATTTTTATCTTCCTGCAGGCATTGNCTATACTATAAAGCCTGACTCAATGCAGGNATTGGNCCANTNNTGGCGTCGTCCAA---TGCAGG-CA---TTGGGCGA-------CTAC--AACT----GATTCCAATGC-AGGCATTGGGCCA--GTTATGG-GTCG-TCC--C--GCGNC-TT-TCG-----TA--AACT-GATTT--ATG-CGGGCGATTGG--CC-GA--TATGGC-GTCGT-C--AATG-CAGGCAATTGGNCNACTNAANAATGGATTCAATGCAACGGCATTGGGNCTGAGTTATGGCGTGCCGTCCCAATGCAGGCATTGGGCGANTGCAAACCTGAATTCAAATGCAGNCATTGGNCNAGTATGCGTCTTCCCAATGCAGGCAATGGTTGACTAACAAACTGATTCAATGCAGGCATTTGGAGCAGTATGGCGTTNTCGAATGCAGGGCGTTGGGGCGACTGGCGNGAACTGATTNAGATNCAGGCATNGGACCANTGTGCGTCGTCCAAATGCTTGCATTGAGCGANTATACNTACNGANCCAAACTGNNGNCATTGGNACCAGTNTGGGCCCCGGGTGTGTCCAATGCNNGCATTCGAGCGGCTTGACTACAANTGATCTAATGCNNGCATCTGAACAGTATGGGTCGTCCAATGCTGCTATTGAAAGCGATACAAACTGTTTATGCANGNNTTNGGNNCANTNTGGCGTCNTCCAATGCAATGCATTCGGGCGNACTNTGACGTNATCCAACGCAAGGCAATTGGNNCATNNTGGCGTCGTNCAATTGCNNGCATTANGGCGAACTATAAANTGATTCAATG--ACAGGC---ATTGGAC-AGTAT---GGCGTCGTCCAATGCAGGCATT-G-GC----G--T-CAAA--CTGATTCAAT-GCAGGCATTGGACNAGTATGGC-GTCGTCCAATGCAGGCATTGGG--AG--TAACAA-----TGAT-----------------ATTC--AATGCAGAC---ATTGGCCGCGTATGGCGCCTT---------CCAATGCAGGCACTGGTTG-ACT-ACGAAC-TGATTCAATGCAGGCATTGGA--CG-AGT--AT-GGCGTCATTTAATGCTAGCATTG----GNCGA-NCTATGAANTGATCTAATG-CAGGCATTGGATCACTT----CG-T-AGTCGAC-GA-TGCNGGCATTGACA
gi|1 : ACTCTGAACCTAAATATTT--TTTT-GTC---TCA-A--T-ATTTTTT-CATAATAT-TGATC-CAT-TGTATTAA--------AGATATTTGAAATGGA--TAT-------TGACTTT-TACACTCTCAAAA-GATAAA-A----AC--G-GAGTTAAT-TTTGATCAT-CA-A-ATTGTT--GTTTT------AATCA--TA-TATGAGT--TATCCAGATTTAATAAAAAGGATTT-GGTTTC--A-TCTA-TGTAT-TTAACAAAAATGGGTCGGCGCAA-AGTTGGTATGG-AAACTCTAATGC-ACTGTTGGATTATATAATTG-GTTGCAACTTTTTATC-CA-TTTT----GCAATT-TCTTTT--AAAAACT-AATTACAA----G-GGCT--CTTGAAATT-GTTAATA-TATG-TTT----TTGCGAAATGGAAA-CCGAATAAT---AAT-TATATTC-ATA-GCAT-GATT-T-ACATGAAG-AA--TTGAATGA--GTTATGGAATGCA-GCAACCCAC-TATCGACGAAAAGA--AATACT-GCCATGG--CA--T-TTTTGCAAAA-AATGGACAATA-TAGCGAAATCGTTTCAATTTTTATTGCCAAT-CAGACATT-TA-AACTAT---TAT--TTGATGAATACCAGCAT--ACCGTAGCTTTCGCGCTTGTAACGA-ATCTTTAGTAAGAATTCAATCA---CAGC----CTGGA--AT-G-AC-TTTCAAT---GA---CAATA-GTGGCAGTAG-AATACCACTCAGAAT---ATTTCAAGAA-CCAATAACAAACA-TTACCCCACTCTGT--CACAAAAGC--AT-GCCCGGC--GTTGGAGCCACTATTTCGC---AGCCAATGGAGGCTTTGGGTGAATA-CTGAACAACCAAT-GCAGCGTTAGTATACTAGA-AATAT-GATTTCATCAGATGGCAGGTGTTGGG--GGT-CGACATCATCCAATGTAGCATTTTTATCTTCCTGCAGGCATTGTCTATACTATAAA--CTGA-TCAATGCAGGCATTGGACCAGTCCTGGTGTCGTCCAA---TGCAGG-TAGGATTGAGCGA-------CTAC--AACT----GATTCCAATGC-ATGCATTGGACCA--GTTATGG-GTCGGTCC--CAAGCGAC------G-----TA--AACT-GATTTCCATG-CAGGCAATTGGAACC-AA--CAAGGC-GTCGT-CGAAATG-C--GC--TTGAGCGACTAAAAAATGGATTCAATGCAACGGCATTGGGAC-GAGTTATGGCGTGTCGTCC-AATGCAGGTAT-GGGCGAGTACAAACCTGA-TTCAAATGCAGCCATTGGCCGAGTATGCGTCTTCCCAATGCAGGCAATGGTTGACTAACAAACTGATTCAATGCAGGCATTTGGAGCAGTATGG-GTTGTCGAATGCAGGGCATTGGGGCGACTGGTGTAAACTGATTGAAATGCAGGCATTGGACCAGTATGCGTCGTCCAAATGCTTGCATTGAGCGACTATACATACTGATTCAA--TGCAGGCATTGGAACCAGTATGGGCCCCGGGTGTGTCCAATGCAGGCATTC-AGCG----GACTACAACT-ATTTAATGCAGGCAT-TGAACAGTATGGGTCGTCCAATGCTGCTATTGAAAGCGATACAAACTGTTTATGTAGGATTTGGGACCAGTATGGCGTCGTCCA--GCAATGCATTCAAACGAACTATAAC-TGATTCAATGCAAGGC--TTGGACCATAATGGCGTCGTTCAATTGCTTGCATTAGAGCGAACAACAAAA-GATTCAATGAAAAAGGC---ATTGGAC-AGTATGGGGGCGTCGTCCAATGCAGGCATT-G-GCGACAG--T-AAAA--CGGATTCCAT-GCAAGCATTGGCCTAGTATGACGGTCGTCCAATGCAGGCATGGGG--AG--TAACAA-----TGAT-----------------ATTCAAAATGCAG-C---ATTGGCCGTGTATGGCGCC-T---------CTAATGCAGGCA-TAGTTGAAAT-ACAAACATGATTC-ATGCAGACATTAGAACCACAGT--ATGGGCGT-ATTT-ATACTAGCATTG----GCTTG-GCTATGAAATGAT-TAATGCCAGGCA-TGGATCACTTATAGAA-C-AGTTGAA-GG-GGAGGGCATTGACA
gi|10 : GAG-GAATATATCTACGAAACTAAACTGGCGCCATTGGCAC---TTTGAG------GTG-GTCCA-TGCCTGCATT-GAGCGGCTTGACTA-AAGTGATC--ATGCCTGCATCTGAA
gi|11 : TTGGCCCATTGTTGGCGTCGTCCAATTTTCTAGGCCA---TTGGCCGAATTCCATTTACTAAACTTGAAAATTTCAATACTAGGCATTTGGTCAATGTTATG--------CC--T--GCGCT-TT-TCA-----TATTAACTCAATTT---TG-CAGGCATTTGG--CCTGT--TATGGT-GTCAT-C--tctttatatcaatcaacagaattgcttttttgctcatcaaaaataaaaccgactaatttcttagtgttcattagagcattatgaattgtaataaaaatgag
gi|12 : ttcaatttgaatggctacA-A--T-ATTTT------AGTTT-AGATCTAAA-TGTTTTGA---------GTGATTTTAAATGAAA-TAT-------TGGCTTT-TAC--TTTCAAAATGATAAA-A----AC--T-GAGTTAAT-TT--ATCAT-AA-G-AGT--T--GTTTT--------TCA--CA-CATGttataccctacatcagttgggct
gi|13 : atcactcaaaacattaagatcttataacttggacaatCTCTGAACT--ATTTTCT--TTTT-GTC----CA-AATT-ATTTTTT-CATAATATTCGATC-AAT--GTATTAA---------GAGATTTGAAAAGGAA-TAT-------TGACTTT-TAC--TCTCAAAATGATAAA-A----ACTAGTAAGTTAAT-TT---------G-A-GTT--G--TTTTT------AAT----CA-TATGAGT--TAcac
gi|15 : tgcgATGGCGTTTTCGAATGCA-GGCGTTG----AAC--GC-AGAACTGATTCAGATTC-GACATAAGACCACTGTG
gi|16 : tggATGCAGGCGCTGGTCG-ACT-ATGAAC-TGATTCACTGCAGGCATTGGG--CG-
gi|17 : ccCTTT-TAC--TCTCGAAATGATAAA-A----AC--T-GAGTTGAT-TT--ATCAT-AAGA-GTT--
gi|2 : ACTCTGAATT--AA-ATTT--TTTT-GTCAAATTA-T--T-TTTTTTT-TATATTAA-CAATC-AAT-GGTATTAAT-------AGA-ATTTGAA-TGGAA-TATCATGTATTGACTTTCTAC--TCTCAA--TGATAAATA----AC--G-AAGT--AT-TT--ATCAT-AA-A-GT------GTTTT------AATCAATCAATGTG-GT--TATC-AGATT----GAAG-GAATTT-GGTTTA--A-TCTA-TGTAT-T-CACAAAAATGG-TCGG-G-AACAGTTGGTATGG-AAACGTCAATGT-ACTGTTG-ATCATA--ATTG-TTTGCCACTGTTCAT--CA-TTTTGGCCGCAATTAT-TTTT--AA--ACT-AATTACAT----GTG-CG--CTTGAAATTCG--TATG-TATGTTTT----TTGCGTAATGGAAA-TCCGATCAT---AAT-TTAACACGATA-TCATCGATT-TAATATG-AG-GA--TTGAATGA--CTTA-GCAATGCACGCGACCAACTTAATA-TGAAA-AATGAATGC-TGCCATGGG-TATTT-TTTCGGCAAAGAA-TTACAATACTAAGAAAATCG-TTCA--TTTTAACGTCAATGCAGA-AAT-T-TAACTAT---TTT--TT-GTCAATTACAGCATG-ATCGT-GCT---TCGCTTGTAGAGA-ATCTCT--TCTC---TCGGTCATGCCAACAG-ACTGGGTGGC-G-ACATCTC-AT---TGGACCAATA-T-GGCAGTAGCAA--CCACCTCGACT---ATTTCAAGAAGCCAATATGAGGC-ATTA-CCAACTCTGT--CAC--AAGCCAATCGCAGGCC--ATTGGA-CCAC-ATTTCAAGAGAG-CAATGCTG--TTTGGTTGAATATCTGAACAGCCGATTGCAGGTTTAG-------GAGAATATCAATTTCTTTCAAT-GCAGGCGTTGGGAC---ACAA-GTCATCCAATGC--CA-----------------GCATTGGTTATA-TATAAAGCTTGACTCAATGC-GGAATTGGGCCCATTATGGCGGCGTCC-A---TG-AGG-CA---TT-GGCGAT------CTAC--AACT----GATTCATATGCAAGGCATTGGG-CA--G--ATGGCGTCG-TCCAAT--GCGGCATTGTCAGCTGTTA--AACT-GATTC--ATGACGGGCGATTGG--CC-AAGTTTTGGCGGTCGTAC--AATG-CAGGCAATTGGTCTACTTAAC--T-GATTCAATGCA--GGCATTGGGCCTG---TATGGCAT-CCGTCCCAATGCAGGCATTGGGCGACTGTAAA-CTGAATTC-AATGCAGGCATTGGGCCAGTATGCGgc
gi|3 : cTATTTCATTTC-GCA---TTA-G--T-GCTTGCTGCATTGCAT-CGATC-A-T-TATATTTA--------AGATATTTGAAATGGAACTAT-------GTACTTT-TAC--TCCCAAAATGATAAA-A----ACT-G-AAGTTAATCTT--ATTAT-AA-AAGTT--T--GTTTT------AATCA--CT-TATGAGTATTATC-AAATT----GAAAAGGATTTTGGTTTA--AATCTAATGTAC-TTCACAAAAATGG-TCAGCG-AA-AGTTGGTATGGAAAACATCAATGCGATCGTTG-ATTATA--ATTGTTTTGCAACTTTTCATCGCATTTTT----GCAATT-C-TTTT--ATTTGCTAAATGACACCAGTG-G-CGCACTTGAAATT-T--AGTATTATG-TTT----TTGCGTAATGGACATTCCGATAGTATGAATATATGTAC-ATATACAT-GATT-T-AAATGAAG-GAATTTGAATGACCGCTTTGCAATGCA-GCAG--CAC-TAATG-CGAAT-GA--AATACTTGCGATGGGTCA--TGTTTCGCAAAAGAATTTACAA-A-TAGCAAAATCTTTTCA---TTTAAAGCCAATGCAGA-TTTATATAACTATATCTTTGATTGGTGGCTTTAAGCATGTACTATATCTCTCTC--------CGAGATC------AAA-------CCATGC--ACGATACT-GGC-GCTGTACTTCTCAATGCCGGGATCAATACTCGGCAGTAG--A--CCA-CTCGACTTAAATTTCAA-AAGCCAACTACAGGCAATTACCCAACTCTGTCCCACAAAAGCCAAT-G-CTGGCTTATTGGcgcgtaataatgc
gi|4 : gC-AGTAT---GGCGTCGTCCAATGCAGGCATTCG-GC----GACTACAAA--CTGATTCAAT-GCAGGCATTGGACCAGTATGGC-GTCATCCAATGCAGACATTGGG--CGACTAA-AC-----TGATCGGCCGAGTATGGCGTAATTC--AATGCAGGC---ATTGGCCGAGTATGGAGTCGT---------CCAATGCAATCACTGGGTG-ACT-ATGAAC-TGATTCAATGCAGGCATCGTC--CG-ACT--AT-GAAGTGATTTAATGTAGGCATTAATTTGGTGA-ACTATAGAGTCGTCCAATG-CAGGCACT-GACCGACT----CGAA-AGTCGTC-CAGTGCAGGCATTTACA
gi|4 : ggccTCGT-C--AATGTCAGG-ATTTGGTTTACTTTAAAATG---TAAATGC--CTGCACTGGAC--GACTT-TCGAGT-CGGT--CAGTGCCTGCATTGGACGACTttttaaagtaaaccaaatcctgacattgacgaactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|5 : ggcccagtatggcgtcgtccaatgcaggcattcggcgactacaaactgattcaatgcaggcattggaccagtatggcgtcatccaatgcagacattgggcgactaaactgatcggccgagtatggcgtaattcaatgcaggcattggccgagtatggagtcgtccaatgcaatcactgggtgactatgaactgattcaatgcaggcatcgtccgactatgaagtgatttaatgtaggcattaatttggtgaactatagTGCATGTATTTGGCATATTCTGACGTCCTCCAATGCA-TGTATT-GGGCATATTCTGACGTCATCCAACGC-AGGTAATTGGCATATTCTGACGTCATGCAA-TGCAGGTATT-TGGCAAATTCTAAAGTCATTCAAT---ACAGACGTTACTAGAC---TTT---GAAGTCGTTCAATG--G--ATT-T-GC----T--T-CAGAATCTG--TTAAT-GCCCGCATTGGATAACTTTAGA-GTAAAACAATGCATGCACTGAG--AA--AAAGAA-----Tactgaaaaacaaatgctgtctacatcaactgcatgaaggtgcatatgtggaatgttttcaacattgcctcaatgcagaaataaatattataaatgtgtaaatatttcgatttgaaatctgttgatttggaaacaagatttcattggcttaccaaaaggtccatattttgctcaaattgaaatggccataacatattattataattttaagcaatgcctcagacttttgcaatcttaacaatgagacatttataatatgtgtctaaatagtagtttttggaataaaaaaatagattggacaaataaaaaaatagttcact
gi|6 : ACTATAAACTGATTTAATG---CAGGC---ATTGGACCAGTAT---GGCGTCATCCAATGCAGACATT-G-GC---------C-GA--CT-AT---ATAGCAGGCAATGGCCGAATATGGT-GTCATTCAATGCAGGCATTG---------AACAACGCTTTGAT-----------------ACTC----TGCTGA----ATT-GCAATGTAT----CTTTCAACAG---CCAATGCATGCACTGGATG-AAT-Acgaacgacgcccgttctaggagaacattatantagagtaaaacaatgcatgcactgagaaaaatagtcaaacgacgcccgttctaggagaacattatgtgtacttgttccagcatttagacattaagacaaaaatgtatagtctaagttaaagtctaagttaattgcattcaggtacacaagtaaaatgttttcagcattttctcaaagtacattcaaatattcttaacttgaaaatactcttctaaaaaatacgctgatttgattttttttttttcaatttgctaaaacgtccattgaaattgctgaaaattttcgctagaattatgacagtgcgctagtgctttgcgatcgtaacaatttataacacataccgaaagttcgttattcaatttcaaaaatggat
gi|7 : tg-AGTAT---GGCGTCGTTCAATGCTTGCATA-GAGC----GACTACAAA--ATGATTCAAT-GAAGGCATTGGACCAGTATGGC-GTCGTCCAATGCAGGCATTGGGCGAG--TA-CAAAT---TGAT-------------------TC--AATGCAGCC---ATTGGCCGTGTATGGCGTCCT---------CTAATGCAGGCATTAGTTG-AAT-ACAAAC-TGATTCAATGCAGACATTAGA--CC-AGT--AT-GGCGTCATTTACTACTAGCATTG----GCTG--GCTATGAACTGATTCAATG-CAGGCATTGGATCACTT----TG-TCAGGAGCC-AA-TGCAGGCATTGtctcatattggcctactttctcaggagccacatgcaattgcatgcctcaaataaacgtgtaccttaggacaatgcagacagtagtttacttttttcagagtcaatgaaagtattgatagaagcaaagctgagatagaatgacctgacatttgaggtctatgccttcttcagagtcattgcaagcactgaacttcttcctatgtgcagttagttcaagcattgcatgaccttctatctacagccaaagcagacggattta
gi|7 : G--AG--GAA-AA-----T-AT-----------------ATCT--AACG-AAACTAAACTGGCCGCA-ATGGCACTTTGAGAGTAGTCCAATGCCTGCATTGGCT--CCTGACAAAG-TGATCCAATGCCTGCATTGAA--TC-AGTTCAT-AGC--CAGCCAATGCTAGTAGTA----AATGACGCCAT--ACTGGTCTAATG-TCTGCATTGAATCAGTT----TG-T-ATTCAACTAA-TGCCTGCATTgactactctcaaagtgccattgcggccagtttagtttcgttagatatattttcctcttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|8 : agtatggcgtcgttcaatgcttgcatagagcgactacaaaatgattcaatgaaggcattggaccagtatggcgtcgtccaatgcaggcattgggcgagtacaaattgattcaatgcagccattggccgtgtatggcgtcctctAA-TAT-------TGGCTTT-AAC--TCTCAAAATGATAAA-AGAAAAT--T-TAGTTATT-TT--ATCATGAA-A-GTT--G--TTTTT------AATTA--CA-C--GGGT---A-C-ATAAT----GTAAA---TAT-GGTTTGCCA-TATA-CACATATTCACTGAAATGA-CCAGCG-AA-AGTTGGCATGG-AAACATCAACGT-ACTGTTG-ATAAT---ATTT-TTAACAGCTTATAA-C-CA-GTTT----GCAATG-T-TTTTGCGAATAAT-AATT----------G-CG--TTTGAAATC-G--GG-A-TATA-TTTGCCGTAGCGTAAT-TAAA-TCCGTTCAC---AAT-TA-ACAC-CGA-ATGT-GATTAA-ACATGAGGAAA--TTGAATGA--GTT-TACAATACA-CCGA-CCAC-TAttttatcaccaattcaaagattgtattttttgctcatcaagaaaataaaacccactaattattgtgttcattagaggcattatgaatttaataaaaatga
gi|9 : aTCGGAACT--AATTTTT--TTTTTGT----TCATA--TCATTTTTT-TATAATATACAACC-AATGTTTCTCAATACTATTGAGAGATTTGCAATGGAA-TAT-------TGACTTT-TAC--TCTCAAAATGATAAA-A----AC--T-GAGTTAAT-TT--ATCAT-AA-A-GTT--TTGGTTTTTTTTTAAAT----TA-TATAAGT--TATC-AGATT----G-AAAGGATAT-GGTTTA--A-TCTA-TGTA--TTCACAAAAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GCAAGTTGCCTCAGAGTTATTTGCAATCGTTATAACAATAAGACATTTATTATAAATAATGTGTTCAAATAAAGTAGTTTTTGGATAATATTAAAAAATCAGGATTGGGCATAAAATATTTTGTCACACT
Unaligned ( gi|18 ): GGTCTCTTCTAAATCTGTTAACGATATGGTCAAGGTATTTAGGGAC