lowQualScore : 1 22 1 1 1 44 1 1 333 1
lowQualScore : . .. . . . .. . . ... .
lowQualScore : 9 66 9 9 9 11 0 8 222 8
consensus : CTTTGCAATC-ACAA--T-AA-A-ATA-TTA-TTC--CATT-GCATAGACCCTT
Reference ( gi|9 ) : CTTTGCAATC-ACAA--T-AA-A-ATG-TTA-TTC--CATT-GCATAGACCCTT
gi|16 : CTTTGCAATC-ACAA--T-AA-A-ATG-TTA-TTC--CATT-GCATAGAC
gi|11 : CTTTGCAATC-ACAA--T-AA-A-ATG-TTA-TTC--CATT-GC--AGACCCTT
gi|10 : CTTTGCAATC-ACAA--T-AA-A-ATA-CGA-TTT--CATT-GCATAGACCCTTt
gi|5 : CTTTGCAATC-CCAA--T-AA-A--CG-TTA-TTC--CATT-GCATAGACCCTT
gi|6 : CTTTGCAATC-ACAA--T-AA-A-ATA-CAA-TTT--CATT-GCATAGACCCTTtaa
gi|4 : CTTTGCAATC-ACAA--T-AT-A-ATA-CGA-TTT--CATT-GCATAGACCCTTt
gi|21 : cCTTTGCAATC-ACAT--T-AA-A-ATG-TTA-TTC--CATT-GCATta
gi|13 : CTTTGCAATC-ACAA--T-AA-A-ATA-CGA-TTT--CATT-GCATAGAC
gi|17 : tCTTTGCAAGA-ACAA--T-AA-A-ATA-TTA-TTC--CATT-GCATAGA
gi|3 : CTTTGCAATC-ACAA--T-AA-T-ATA-CGA-TTT--TATT-GCATATACCCTT
gi|20 : tcCTTTGCAGTC-ACAA--T-AA-A-ATA-TTT-TTG--CATT-GCATAta
gi|19 : CTTTACAATC-ACAA--T-AA-A-ATA-CGA-TTT--CATT-GCAT
gi|2 : tcCTTTGCAGTCCACAA--T-AACA-ATA-AT--TTG--CATT-GCATAGACCCTT
gi|7 : CTTTGCAATC-ACAA--T-AA-ATACGAAAA-TTT--CATT-GCAAAGACCCtaat
gi|15 : cCTTTGCAGTC-ACAA--TGAA-A-ATA-TTT-TTTTGCATT-GCATAG
gi|1 : CTTTGCAATC-ACAACCT-AA-A-ATA-CGA-TTT--CATCGGCAT--ACCCTT
gi|14 : ttTTTGCAATC-ACAA--T-AA-A-ATA-TTA-TTC--CATT-GCATAGAGCCtaa
gi|8 : TTTGCAATC-ACAA--T-GA-A-ATA-TTCTTTC--TATT-GCATAGACCCT
gi|22 : TTTGCAATC-ACAA--T-GA-A-GTA-TCA-TTC--C-TT-ACAat
gi|12 : TTGCAGTC-ACAA--T-AA-A-ATA-TTT-TTG--CATT-GCATAGACCCTT
gi|18 : cTTGCAATC-GAAA--T-AA-A-ATA-TTA-TCC--CATT-GCATAGAC
gi|23 : A-TTT--CATT-GCATAGACCCTTa
Alignments
lowQualScore : 1 22 1 1 3333 1 222 1
lowQualScore : . .. . . .... . ... .
lowQualScore : 8 55 8 8 5555 7 666 7
consensus : CTTTGCAATC-ACAA--T-AA-AATATT---A-TTC--CATT-GCATAGACCCTT
Reference ( family-626 ) : CTTTGCAATC-ACAA--T-AA-AATATT---A-TTC--CATT-GCATAGACCCTT
gi|1 : CTTTGCAATC-ACAACCT-AA-AATACG---A-TTT--CATCGGCAT--ACCCTT
gi|10 : ttCTTTGCAATC-ACAA--T-AA-AATACG---A-TTT--CATT-GCATAGACCCTTtaa
gi|11 : CTTTGCAATC-ACAA--T-AA-AATGTT---A-TTC--CATT-GC--AGACCCTT
gi|12 : TTGCAGTC-ACAA--T-AA-AATATT---T-TTG--CATT-GCATAGACCCTTt
gi|13 : cCTTTGCAATC-ACAA--T-AA-AATACG---A-TTT--CATT-GCATAGAC
gi|14 : tTTTGCAATC-ACAA--T-AA-AATATT---A-TTC--CATT-GCATAGAGCC
gi|15 : CTTTGCAGTC-ACAA--TGAA-AATATT---T-TTTTGCATT-GCATAG
gi|16 : CTTTGCAATC-ACAA--T-AA-AATGTT---A-TTC--CATT-GCATAGAC
gi|17 : CTTTGCAAGA-ACAA--T-AA-AATATT---A-TTC--CATT-GCATAGA
gi|18 : TTGCAATC-GAAA--T-AA-AATATT---A-TCC--CATT-GCATAGAC
gi|19 : CTTTACAATC-ACAA--T-AA-AATACG---A-TTT--CATT-GCATa
gi|2 : tcCTTTGCAGTCCACAA--T-AACAATAAT-----TTG--CATT-GCATAGACCCTT
gi|20 : CTTTGCAGTC-ACAA--T-AA-AATATT---T-TTG--CATT-GCATAtaat
gi|21 : CTTTGCAATC-ACAT--T-AA-AATGTT---A-TTC--CATT-GCAT
gi|22 : TTTGCAATC-ACAA--T-GA-AGTATC---A-TTC--C-TT-ACA
gi|23 : ---A-TTT--CATT-GCATAGACCCTT
gi|3 : acgCTTTGCAATC-ACAA--T-AA-TATACG---A-TTT--TATT-GCATATACCCTTtaaagtt
gi|4 : tcCTTTGCAATC-ACAA--T-AT-AATACG---A-TTT--CATT-GCATAGACCCTTta
gi|5 : cCTTTGCAATC-CCAA--T-AA-A-CGTT---A-TTC--CATT-GCATAGACCCTTta
gi|6 : CTTTGCAATC-ACAA--T-AA-AATACA---A-TTT--CATT-GCATAGACCCTTtaa
gi|7 : CTTTGCAATC-ACAA--T--A-AATACGAAAA-TTT--CATT-GCAAAGACCCt
gi|8 : cTTTGCAATC-ACAA--T-GA-AATATT---CTTTC--TATT-GCATAGACCCT
gi|9 : CTTTGCAATC-ACAA--T-AA-AATGTT---A-TTC--CATT-GCATAGACCCTTat
Alignments
lowQualScore : 1 22 1 1 3333 1 222 1
lowQualScore : . .. . . .... . ... .
lowQualScore : 8 55 8 8 5555 7 666 7
consensus : CTTTGCAATC-ACAA--T-AA-AATATT---A-TTC--CATT-GCATAGACCCTT
Reference ( family-626 ) : CTTTGCAATC-ACAA--T-AA-AATATT---A-TTC--CATT-GCATAGACCCTT
gi|1 : CTTTGCAATC-ACAACCT-AA-AATACG---A-TTT--CATCGGCAT--ACCCTT
gi|10 : ttCTTTGCAATC-ACAA--T-AA-AATACG---A-TTT--CATT-GCATAGACCCTTtaa
gi|11 : CTTTGCAATC-ACAA--T-AA-AATGTT---A-TTC--CATT-GC--AGACCCTT
gi|12 : TTGCAGTC-ACAA--T-AA-AATATT---T-TTG--CATT-GCATAGACCCTTt
gi|13 : cCTTTGCAATC-ACAA--T-AA-AATACG---A-TTT--CATT-GCATAGAC
gi|14 : tTTTGCAATC-ACAA--T-AA-AATATT---A-TTC--CATT-GCATAGAGCC
gi|15 : CTTTGCAGTC-ACAA--TGAA-AATATT---T-TTTTGCATT-GCATAG
gi|16 : CTTTGCAATC-ACAA--T-AA-AATGTT---A-TTC--CATT-GCATAGAC
gi|17 : CTTTGCAAGA-ACAA--T-AA-AATATT---A-TTC--CATT-GCATAGA
gi|18 : TTGCAATC-GAAA--T-AA-AATATT---A-TCC--CATT-GCATAGAC
gi|19 : CTTTACAATC-ACAA--T-AA-AATACG---A-TTT--CATT-GCATa
gi|2 : tcCTTTGCAGTCCACAA--T-AACAATAAT-----TTG--CATT-GCATAGACCCTT
gi|20 : CTTTGCAGTC-ACAA--T-AA-AATATT---T-TTG--CATT-GCATAtaat
gi|21 : CTTTGCAATC-ACAT--T-AA-AATGTT---A-TTC--CATT-GCAT
gi|22 : TTTGCAATC-ACAA--T-GA-AGTATC---A-TTC--C-TT-ACA
gi|23 : ---A-TTT--CATT-GCATAGACCCTT
gi|3 : acgCTTTGCAATC-ACAA--T-AA-TATACG---A-TTT--TATT-GCATATACCCTTtaaagtt
gi|4 : tcCTTTGCAATC-ACAA--T-AT-AATACG---A-TTT--CATT-GCATAGACCCTTta
gi|5 : cCTTTGCAATC-CCAA--T-AA-A-CGTT---A-TTC--CATT-GCATAGACCCTTta
gi|6 : CTTTGCAATC-ACAA--T-AA-AATACA---A-TTT--CATT-GCATAGACCCTTtaa
gi|7 : CTTTGCAATC-ACAA--T--A-AATACGAAAA-TTT--CATT-GCAAAGACCCt
gi|8 : cTTTGCAATC-ACAA--T-GA-AATATT---CTTTC--TATT-GCATAGACCCT
gi|9 : CTTTGCAATC-ACAA--T-AA-AATGTT---A-TTC--CATT-GCATAGACCCTTat
blockSeqs : C . G C GAAA T TTG .
blockSeqs : . . . . G . T .
blockSeqs : . . . . T . C .
blockSeqs : . . . . T . G .
blockSeqs : . . . . G . T .
blockSeqs : . . . . T . C .
blockSeqs : . . . . T . C .
blockSeqs : . . . . T . C .
blockSeqs : . . . . T . C .
blockSeqs : . . . . T . T .
blockSeqs : . . . . G . G .
blockSeqs : . . . . T . G .
blockSeqs : . . . . T . C .
blockSeqs : . . . . T . C .
blockSeqs : . . . . C . T .
blockSeqs : . . . . G . T .
blockSeqs : . . . . G . T .
blockSeqs : . . . . T . C .
blockSeqs : . . . . A . T .
blockSeqs : . . . . T . T .
blockSeqs : . . . . T . C .
blockSeqs : . C .
blockSeqCons : **
originalCons : CTTTGCAATC-ACAA--T-AA-AATATT---A-TTC--CATT-GCATAGACCCTT
finalCons : CTTTGCAATC-ACAA--T-AA-AATATT---A-TTC--CATT-GCATAGACCCTT
Alignments
lowQualScore : 1 22 1 1 3333 1 222 1
lowQualScore : . .. . . .... . ... .
lowQualScore : 8 55 8 8 5555 7 666 7
consensus : CTTTGCAATC-ACAA--T-AA-AATATT---A-TTC--CATT-GCATAGACCCTT
Reference ( family-626 ) : CTTTGCAATC-ACAA--T-AA-AATATT---A-TTC--CATT-GCATAGACCCTT
gi|1 : CTTTGCAATC-ACAACCT-AA-AATACG---A-TTT--CATCGGCAT--ACCCTT
gi|10 : ttCTTTGCAATC-ACAA--T-AA-AATACG---A-TTT--CATT-GCATAGACCCTTtaa
gi|11 : CTTTGCAATC-ACAA--T-AA-AATGTT---A-TTC--CATT-GC--AGACCCTT
gi|12 : TTGCAGTC-ACAA--T-AA-AATATT---T-TTG--CATT-GCATAGACCCTTt
gi|13 : cCTTTGCAATC-ACAA--T-AA-AATACG---A-TTT--CATT-GCATAGAC
gi|14 : tTTTGCAATC-ACAA--T-AA-AATATT---A-TTC--CATT-GCATAGAGCC
gi|15 : CTTTGCAGTC-ACAA--TGAA-AATATT---T-TTTTGCATT-GCATAG
gi|16 : CTTTGCAATC-ACAA--T-AA-AATGTT---A-TTC--CATT-GCATAGAC
gi|17 : CTTTGCAAGA-ACAA--T-AA-AATATT---A-TTC--CATT-GCATAGA
gi|18 : TTGCAATC-GAAA--T-AA-AATATT---A-TCC--CATT-GCATAGAC
gi|19 : CTTTACAATC-ACAA--T-AA-AATACG---A-TTT--CATT-GCATa
gi|2 : tcCTTTGCAGTCCACAA--T-AACAATAAT-----TTG--CATT-GCATAGACCCTT
gi|20 : CTTTGCAGTC-ACAA--T-AA-AATATT---T-TTG--CATT-GCATAtaat
gi|21 : CTTTGCAATC-ACAT--T-AA-AATGTT---A-TTC--CATT-GCAT
gi|22 : TTTGCAATC-ACAA--T-GA-AGTATC---A-TTC--C-TT-ACA
gi|23 : ---A-TTT--CATT-GCATAGACCCTT
gi|3 : acgCTTTGCAATC-ACAA--T-AA-TATACG---A-TTT--TATT-GCATATACCCTTtaaagtt
gi|4 : tcCTTTGCAATC-ACAA--T-AT-AATACG---A-TTT--CATT-GCATAGACCCTTta
gi|5 : cCTTTGCAATC-CCAA--T-AA-A-CGTT---A-TTC--CATT-GCATAGACCCTTta
gi|6 : CTTTGCAATC-ACAA--T-AA-AATACA---A-TTT--CATT-GCATAGACCCTTtaa
gi|7 : CTTTGCAATC-ACAA--T--A-AATACGAAAA-TTT--CATT-GCAAAGACCCt
gi|8 : cTTTGCAATC-ACAA--T-GA-AATATT---CTTTC--TATT-GCATAGACCCT
gi|9 : CTTTGCAATC-ACAA--T-AA-AATGTT---A-TTC--CATT-GCATAGACCCTTat