lowQualScore : 1111111111111111111111111111 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1111111111111111111111111111111111111111111111111111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 4444 1 1 2 1111111111111111111111111111 1 1 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111 22 1 1 22222 111 444444444 11111 55555555 11111 222222 1111 1111 1111 4444444 11 22 2222222222222222222222222222222222222222222222222222222222222222222222222 1 222222 77777777777777777 1111 11 22 11 1 11 333333333333 22 1 1 1 3333333 1111 333333 11 333333 2222 111 11 33333333 11 11111 111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 1 555555555555 3333333333333333 22222 1 111 1 1 1 1 44444444 1 111 222 1 222222 2222 1 2 1 4444444444 22 5555555555555555555555555555 111 11 1 444444444444444444444444444444444444444444444444444444444444444444 1 111 666666666666666666666666 22222222222222 22222 11 3333 11 111 11 1111111 111 000000000000000000000000000000000000000000000000000000000000000 22 111 22222 11111 111 111
lowQualScore : 5 4444 7 5 0 8888888888888888888888888888 9 3 3 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 2 0 888 33 0 5 0 8 33333 444 8 8 888888888 6 66666 22222222 6 33333 6 333333 2222 88 0 8 7777 7777 9999999 11 0 6 00 8 8 8 8 0 8888888888888888888888888888888888888888888888888888888888888888888888888 8 8 0 6 222222 66666666666666666 4444 33 33 33 0 33 999999999999 8 8 00 5 7 6 4444444 8 4444 555555 00 2 6 444444 8 8 2222 8 8 444 11 88888888 0 5 0 8 44 8 33333 8 111111 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 33 0 0 000000000000 4444444444444444 33333 0 888 0 2 2 2 0 0 0 11111111 5 777 444 0 222222 7777 0 3 0 3 0 0 6666666666 33 5555555555555555555555555555 777 33 0 0 8 999999999999999999999999999999999999999999999999999999999999999999 1 3 111 6 444444444444444444444444 3 99 77777777777777 6 6 5 88888 0 00 0 7777 99 8 444 999 5 77 22 5555555 222 333333333333333333333333333333333333333333333333333333333333333 5 11 555 33333 44444 000 5 000 5 5
lowQualScore : . .... . . . ............................ . . . ............................................................................................................................................................................. . . ... .. . . . . ..... ... . . ......... . ..... ........ . ..... . ...... .... .. . . .... .... ....... .. . . .. . . . . . ......................................................................... . . . . ...... ................. .... .. .. .. . .. ............ . . .. . . . ....... . .... ...... .. . . ...... . . .... . . ... .. ........ . . . . .. . ..... . ...... ............................................................................................................... .. . . ............ ................ ..... . ... . . . . . . . ........ . ... ... . ...... .... . . . . . . .......... .. ............................ ... .. . . . .................................................................. . . ... . ........................ . .. .............. . . . ..... . .. . .... .. . ... ... . .. .. ....... ... ............................................................... . .. ... ..... ..... ... . ... . .
lowQualScore : 0 5555 0 5 0 5555555555555555555555555555 0 3 3 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 5 8 888 88 0 0 8 0 22222 000 0 0 222222222 7 77777 77777777 7 33333 7 444444 2222 88 8 0 0000 0000 0000000 00 8 4 88 0 0 0 0 8 0000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 0 222222 22222222222222222 5555 88 88 88 0 88 222222222222 0 0 88 0 0 0 8888888 0 2222 222222 22 5 7 000000 0 0 8888 0 0 000 00 22222222 8 0 8 0 00 0 00000 0 222222 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 44 0 2 000000000000 0000000000000000 00000 0 888 0 5 5 5 0 0 0 00000000 5 000 000 0 555555 0000 0 2 8 2 0 0 0000000000 88 2222222222222222222222222222 555 88 0 8 0 444444444444444444444444444444444444444444444444444444444444444444 0 3 777 7 555555555555555555555555 2 22 00000000000000 7 7 6 00000 8 88 8 2222 00 0 000 444 7 99 33 3333333 777 999999999999999999999999999999999999999999999999999999999999999 7 44 111 66666 33333 000 7 000 7 7
consensus : NNACATCCTTCTTTTTAATAAAATAAATGCTATTGT-AAATTACGTATTAATGGAAAAGCTTTTTAAATG-ATTAGAAT-TTACACG-------TT-T-TTT--TTTC-ATA--------------TTGTGG--GGATCAATNTAATTAATATNCCAATNATATCG-G-GAAATGTAATATATAA----T-T----CAAT----GACATGTA--AA-----ATGCATT--AG---TATTGTA-AG------------TN-CTNAAA-CGATTTT-GC-AGGAAAATATTA-AACAC-TG---TCAC-A-GGT----C-TTNACA-TT-----TGTAACTTTAT---CTTT-CT-AAAA--T--GACACTT-CTGAATTCT-C-TAAA--C-TT-TCATGTG-ATT----GGTA----TTTTC----T--TTA--TGCGACGAATGNA-CAT-TG-AA-GCATGTC-ATACAT--AATGAA---T-AATAATTNAAGTT-AACAAAA-CAACNACACAATGG--GAAA--------AAA---T-TGA-GTT-C-AATAAAAACA--A---CACAAGGAG----A------AG-GGGG--GGGG--GGGTG-AT--AG-ACCT--ACG-T---CTA----CTT-GTGATTTATTAG-T-AATAACAAGCAAAT-TGTGTA------TA-TACACGCGTGT----AGTCAA-T--TAG-AAATAANAAGCAAAT-TGTGTA------T-AT-ACACGCGTGTA--GACAATTT-AGAA-GG---AAA--AA---GAA--TATGTAAAGCATTTA-CGTCTTT-GG-AAAA--A--CAAA-CC--A-C-GAT------A-----TT------C-CCCN----------AC--CTTTCTG-----------TGA--------------C-----------TGACATTACGATCT-----G--GACGTTGG-GTTGTAGG--CC-GAA----TTATC------G-CTT---TTACT-C-GTAA-TTCCC--CC-GGCCTTTCGA-GGC-TCAAACCT-ATAAGGCCC----GATACCT--ATGCGTT-CAACA-AAA--ATC-GCTTTC--A-TTG-TAACTTTCTC-TCTCAGCGAT-CGGTAA----TGC---GTAAAGAA--TTTTTGCCGCCACNT---GTCAAAAGAA--TC-GTTC---GCTGTCGTG--ATTGTG-TTCTG-GGTGTGACGTCAC--GCTG-CTGT--AAG--TCTCG-C-A--T--AGGA-----TATAAAC-T------C--G---C--ATACGTTCGGCT-ATTTCC---G-TAAA--GTACA-T---------AG----TTGTAAGGTAC--G--TTTTA-GA-AG-A-AT-AAATCGAGTT-----TATATTCATAAGACA-AATTTAT--T-TTT---CAGAAAAGT-A-GCG-TN-TATTG-GCCATC-AA----ACACC--TATTTATTTAGT--G-TTCTTT-TTTACG---CGTGN--GAA--GTT-T-AAT--AGA--TTTAACNA---AAAAAAAG-CTCC--ATG-AACTG----TCA-----GTAT---TG-GTAAAAAG---TGC-CGGGA-CCCGCTCT
Reference ( gi|2 ) : TTACAGCCTTCTTGT-GATAATATAAATG-TATTGTAAAATAACATATTAATGGGAAAGCCTTTTAAGTG-ATTAGAAT-TTACACA-------TT-T-TTT--TTTC-ATAAAGGGCCTGGACCTTTATGATTGAA--AATATAAGAAACATATCTATCATATTG-GGGAAAGGCAATATATAA----TCTT---CGACT---GATATGTA--AA-----ATGCATT--A----TATTGT----------------TG-CTGAAA-TGATTT--GC-AGGACAATATTA-A-CAA-TG---TCAC-A-GGT----C-TGAACA-TT-----TGTAACTTTAT---GT---CT-AAAA--T--GACACTT-CTGAATACT-C-TAAA--C-TT-TCATGTG-ATT----GGTA----TTTTC----A--TTA--TGTGACAAATGCA-TAT-TG-AA-GCATGTC-ATACAC--AATAAA---TTAATGATTTAAGTTTAACAAAAACAACAACACAATGG--GGAA--------ACA---T-TGA-GTT-C-AATGAAAACA--A---CACAAGGAA----A------AG-GGGG--AAGG--GGGT--AT--AG-ACCT--ACG-T---CTT----CTT-GTGATTTATTAG-T-GATCACATGCAAAT-TGTGTA------TA-TACACGCGTGT----AGTC---T--TAG-AAATAACAAGCAAAT-TGTGTA------T-AT-ACACGCGTGTA--ATCAATTT-AGAA-GG---AAA--AA---GA---TATGTAAAGCATTTA-CGTCTTC-GG-AAAA--A--CAAA-CC--A-C-GAT------A-----TT------C-CCCA----------AC--CTTTCTG-----------TGA--------------C-----------TG-----------T-----G--AACGTTGG-TTTGTAGG--CC-GA-----TTATC------G-CTT---TTACT-C-GCAA-TTCCC--TC-GGCCTTTCGA-GGC-TCAAACCT-ATAAGACAC----GATACCT--ATGCGTT-C-ACA-AAA--ATC-GCTTTC--A-TTG-TAACTTTCTC-TCTCAGCGAT-CGGTAA----TG----GTAAAGAA--TTTTTACCATCACA----GTCAAAAAAA--TC-GTTC---GCTGTCATG--ATTGTA-TTCTG-GGTGTGACGTCAC--GATG-CTG---AAG--TATAG-C-A--T--AGGA-----TATAAAC-T------C--G---C--ATACGTTCGGCT-ATTTCC---G-TAAA--GTACA-T---------CA----TTGTAAGGTAT--G--TTTTA-GA-AG-A-AT-AAATCGAGTT-----TATATTCATAAGACA-A--TTAT--T-TTT---CAGAAAAGT-A-GCG-TA-TATTG-GCCATC-AA----ACACT--TATTTATTAAGTGGGGTTTTTT-TTTACG---CGTGG--GAA--GTTTTGAA---AGA--TTAAAAAA---AAAAAAAG-CTTC--ATG-ACCTG----GCA-----GTAT---TG-GTAAAAAG---TGC-CGGGA-CCCGCTCT
gi|1 : ACATCCTTCTT-T-AATAAAATAA-TGCTATTGT------------TAAT------------TAAATG-ATTAGAAT-TTACACAGTTATTATT-TATTT--TTTC-ATA--------------TTGTG---GGA--AATC-----AATATAT---TCA-ATTG-T--ATATGTAATATACAA----TTTGAAACAATTTAAAACATGTATAAATATACATGTATT--AGTAATATTGTAAAGAT----------TT-CTGAAAACGATTTT-GCCAAGAAAATAT-A-A-CAC-TGCACTAAC-A-AGTAAATCGTTAACA-TTCTCCCTATACTTTTATTCTGTTT-CT-AAAA--TATGCCACTTACTGAATTCTTC-TAAAAAC-TT--CATGTG-ATTTTCGGGTA----TTTTC-------TGG--TATG-CGAACGGA-CAT-TG-AAAGCATGTCCATACATTGAATAAAAAATTAATG------GTTCAACACAATTAGCGATAGAA-------AA--------AAT---T-TGATGTTTC-AATAAAAACATCA---CACAAGGAGCTCCA------CG-GGGGTGAAGGCGGGGTGGATTCAGCACCCTGACG-TATTCTTTTTACTT-GTGCTTTATTAGCT-AATAAAAAGCAAAT-TGTGTAATACATTG-TACACGCGTGT----AG
gi|4 : cactggACATCCTTCTTTTTAATAAAATAAATG-TATTGT-AAATTACGTATTAATGGAAAAGCTTTTTAAAAGAATTAGAAT-TTACACG-------TTAT-TTTA-TTTCAATA--------------TTGTGG--GAATCAATATAATTAATATTCCAATGATAT---GTAAAATACAGT-TAT----------------------ACATGTA-------------ATT--AG---TATAAT----------------T---TTAGA-T---TT--GC-AGGAAAATATTA-A-CAACTG---TCACAA-GGT----C-TTTACATTT-----TGTAACTTTAT---CT---TTCAAAA--T--GACACTT-CTGAATTCT-C-TAAA--C-TT-TCATGTG-ATT----GGTA----TTTTC----T--TTA--TGCGATAAATGTAGCAT-TG-AA-GCATGCC-ATACAT--GATAAA-----------TTAAGTT------------CAACACAATGGAAAAAA--------AAA---T-TGA-GTT-C-AATAAAAACA--ATACCACAAGGAG----AATGGGGAG-GGGG--GGGG--GGGT--AT--AG-ACCT--ACGTT---CTA----CTTGGTGATGTATTAG-TAAATAACAAGCAAATATGTAT-------TA-TACATGCGTGT----AGACAATT--TAG-AAGGGAAAAAAAGAT-TGTgaacaatttagaaaggaaaaacgagaattattagagaatttaacgtctttggaaaaaaacaaacctaactgatcaattaattccccatatatgcgccaccttctgcttgataaaactgacattacgatctgtgcgaacgtggggtttgtaggtccgaactatttatttaatctgccttactccgtaaattcccacgcctttcgaaggctcaaaccttacaaggccccaaggaaccttgcgtttcacacaaaatcagctttcttgctaactttctcgtctcagcatccggtaaataatgcgtaaagaaatttttgccccacatcctgtcaaagagaattctgttcctcgcttgcatgattgtatctgtggtgtgagttcacctgctggctgaaagttctcgcatatgaagctatataaacctcactacggttcatactctcgccttattttcctcgctaaatcgtacatattgtaaggtatctgctttttaaaagaataaatcgagttgtctgtatattataatacaaatttatattttcagaaaagtgagcgttaattggtcatcaaaaacctatatctatttattcttttttcatctaaccgttctagatatagacttagtcaaaaaaagagacttcctatgaactgttctgcagtatggtaaaaagcgatgcgcgggatcccgctct
gi|3 : ctgTAACTG-ATTAGAATGTTACACA-------TT-T-ATTCATTTC-Aaaagcatttacgtcttttggaaaaacaaaaccatcgataattattccccccaccttctgtggactgacattacgatctgtggacgttgggtttaggcccgattatcggcttaaattactcgcaattccccttcggcctttcgaggcctcaaacctataaggcccgatacctatgcgtttaacgaaaccgttgctttcatttgtaactttcttc
gi|3 : cATATCGTGGGAA---TAATATATAAACAATATT---CAATG---GATATGTA--AA-----ATACACTTCA----TACTGTATAGTAATTTTAGACTTGGCTGAAA-CGATTTTGGC-AAGAAAATATTACA-CAC-TG---TCAC-AAGGT----C-TTTACA-TT-----TGTAACCTTTT---CTTTCCT-AAAA--T--GACACTT-CTGAATTCT-CGTAAA--CGTG-TCATGTGAATT----GGTATTTCTTTTC-------TTA--TGCGACGAATGGA-CATCTGAAA-GCAT-CC-A-AC-----ATGAA-----GATAATTAAAGT-------------CAACACA--GG--GAAA--------AAAATCT-TGA-GTT-CAAATAAAAACA--A---CACAAG--A----G------AGTGGGG--GGGG--GGGTA-AT--AG-ACCT--ACG-T---A------CTT-GT-ATTTATTA--T-AATAACAAGCAAATCTGTGTA------TATTCCGCGCGTGTATACAATT---T--TAG-AAGGAAAAAAAAAAaatatcgtgggaataatatataaacaatattcaatggatatgtaaaatacacttcatactgtatagtaattttagacttggctgaaacgattttggcaagaaaatattacacactgtcacaaggtctttacatttgtaaccttttctttcctaaaatgacacttctgaattctcgtaaacgtgtcatgtgaattggtatttcttttcttatgcgacgaatggacatctgaaagcatccaacatgaagataattaaagtcaacacagggaaaaaaatcttgagttcaaataaaaacaacacaagagagtgggggggggggtaatagacctacgtacttgtatttattataataacaagcaaatctgtgtatattccgcgcgtgtatacaattttagaaggaaaaaaaaaagatgtaaagcattactcttttggcaaaatcataaaccacgatattattccaccccaccttctgtgactgacattacgatctacggagaccgttgggttgtaaggcccgaatcatcgcttttactccgtaattcccccaggcttcgaggctcaaacctataagcccgaacctatgcgttcaacaaaaatgcgttcaaattgtaacttctcttctcagcgatccggtaatgtaaaaaatttttgccacacctgtcaaaagaatcgttcgctgtcatgatattgtacttctgggtgtgactccagctgtaagtctcgcaatagataaactctccaatacgttcggctattccgtaaatgatagttgtaaggtatgtcttataaagaaataaatcgagttaaatattatattacaaatttatttttttctagaaaagtaggcgtttattggccatctaaacacctatttatttagtttttatttgatgcgtgtgaagttatacagacttaatcaaacaaaagcttcaaatgcactgtcagtatctgtagtaaaaagtgccgggacccgct
gi|9 : ctaactgattagaatgttacacatttattcatttcaaT----------------TA-CTCACA-CAATTT--GT-AGGAAAATATTA-AATAC-TG---TAAC-A-GTT----C---AGCA-TT-----TGTAACTTTAT---CT---TT-A-----------------TGAAT-C------AA--T-TTGTCA---G-ATA----GGTA----TTTTC----T--TTAAGAGTGACAAATGCA------------CATGTC-ATA-----AATGAA-----AA--ATTGAA-TTGAACAAAAGCAACCA-AGGAGGG--GGGAGGGGGGTCACA---T-TCA-GTT-gatgtaaagcattactcttttggcaaaatcataaaccacgatattattccaccccaccttctgtgactgacattacgatctacggagaccgttgggttgtaaggcccgaatcatcgcttttactccgtaattcccccaggcttcgaggctcaaacctataagcccgaacctatgcgttcaacaaaaatgcgttcaaattgtaacttctcttctcagcgatccggtaatgtaaaaaatttttgccacacctgtcaaaagaatcgttcgctgtcatgatattgtacttctgggtgtgactccagctgtaagtctcgcaatagataaactctccaatacgttcggctattccgtaaatgatagttgtaaggtatgtcttataaagaaataaatcgagttaaatattatattacaaatttatttttttctagaaaagtaggcgtttattggccatctaaacacctatttatttagtttttatttgatgcgtgtgaagttatacagacttaatcaaacaaaagcttcaaatgcactgtcagtatctgtagtaaaaagtgccgggacccgct
gi|15 : ttatcatAATATTA-AACCC-TG---TCAC-A-GTT----T-C--ACA-TT-----CCTAGCTTTCT---CTTC-CT-AAAAATT--GACACTT-CAGAAg
gi|6 : ACA-TT-----TGTAACTTTAT---CTTT-CT-AAAA--T--AACACTT-TTGAATTCT-C-TAAA--C-TT-TCATGTG-ATT----GTTA----TTTTTTTTAAGTTTA--TGTGACAAATGTA-CAT-TG-AA-ACATGTC-ATACA------------TGAATAATTTTAGTTTAACAAAAACAACTACACAATGG--AAAA--------AAA---AATGA-TTT-C-AATAAAAGCA--A---CACAAGG------------------TG--AGGG--GGGT--AT--AG-ACCT--ATG-T---CTA----ATT-GTGGTTTATTAG-T-AATAACAAGCACAT-TATGTA------TA-TACACGCATGT----AGTCAATT--TAG-AAgtttc
gi|5 : ttt---CTA----CTT-CTGATTTATTCG-T--ATAGCAAGCAAAA-TGAGTACA----TA-TACATGCATGT----TGTCAAAT--TAG---ATAAAAATCAAgggggaaatatgtaatgcatttacgtctttgaaaaaacaaaccatgatattctccccacctttctataactgacattacgatctgttgacgttgggttgta
gi|6 : TGT----GGTT---TATTAG-TAATAACAAGCACAT-TATGTA------T-AT-ACACGCATGTA--GTCAATTT-AGAA-GG---GGG--AA----A---TATGTAATGCATTTA-CGTCTTT-GA-AAAA--A--CAAA-CC--A-T-GAT------A-----TT------CTCCCC----------AC--CTTTCTA-----------TAA--------------C-----------TGACATTACGATCT-----GTTGACGTTGG-GTTGTAtacatttaaagtatttacgtctatggaaaaatatcccacgacattctcctcttctttctgcggctgatgcattgtattacgttgttatcaattccactaagtttcccctgactttggggttcaaacctgtaaggtcggatatttaaatgcattcacaaaattcactttcattatacttttctctccgtaatcagtaatggtcaaaaaccttgttgtgtcactgtcaaaagaacggtccacagttgtgcttgtgttctaggtgtgtcgcaatactgttaaagtctcgcatgtgggatgaaatatcgcacatgtttgaccatttccataaaatataaagttatacggtacgaagagaaaaaaaatcctaactcaagcatttttttttttcaaaaatgtacattactaacaaagatacactta
gi|4 : tttacatttgtaactttatctttctaaaataacacttttgaattctctaaactttcatgtgattgttattttttttaagtttatgtgacaaatgtacattgaaacatgtcatacatgaataattttagtttaacaaaaacaactacacaatggaaaaaaaaatgatttcaataaaagcaacacaaggtgaggggggtatagacctatgtctaatGTA---T--TAGTAAATAACAAGCAAAT--ATGTA------TTAT-ACATGCGTGTA--GACAATTT-AGAA-GGGAAAAA--AA---GA---T-TGTAAAGCATTTA-CGTCTTTTGG-AAAA--A--CAAAACC--ATC-GAT------AATTATTC------C-CCCC----------AC--CTT-CTG-----------TGGACTGACATTACGATC-----------TG-----------T-----G--GACGTTGG-GTT-TAGG--CCCGA-----TTATC------GGCTTAAATTACT-C-GCAA-TTCCCCTTC-GGCCTTTCGA-GGCCTCAAACCT-ATAAGGCCC----GATACCT--ATGCGTT-TAACG-AAACCGTT-GCTTTC--ATTTG-TAACTTTCT
gi|3 : ctgacatccttctttttaataaaataaatgtattgtaaattacgtattaatggaaaagctttttaaaagaattagaatttacacgttattttatttcaatattgtgggaatcaatataattaatattccaatgatatgtaaaatacagttatacatgtaattagtataattttagatttgcaggaaaatattaacaactgtcacaaggtctttacattttgtaactttatctttcaaaatgacacttctgaattctctaaactttcatgtgattggtattttctttatgcgataaatgtagcattgaagcatgccatacatgataaattaagttcaacacaatggaaaaaaaaattgagttcaataaaaacaataccacaaggagaatggggaggggggggggggtatagacctacgttctacttggtgatAATAACAAGCAAATCTGTGTA------T-ATTCCGCGCGTGTA--TACAATTTTAGAA-GG---AAA--AA---AAAAAGATGTAAAGCATT-A-CTCTTTT-GGCAAAATCA--TAAA-CC--A-C-GAT------A-----TTATTCCAC-CCCA--------------CCTTCTG-----------TGA--------------C-----------TGACATTACGATCTACGGAG--ACCGTTGG-GTTGTAAGGCCC-GAA----TCATC------G-CTT---TTACTCC-GTAA-TTCCC--CCAGGC--TTCGA-GGC-TCAAACCT-ATAAG-CCC----GA-ACCT--ATGCGTT-CAACA-AAA--AT--GCGTTCAAA-TTG-TAAC-TTCTCTTCTCAGCGATCCGGTAA----T-----GTAAAAAA--TTTTTGCCA-CACCT---GTCAAAAGAA--TC-GTTC---GCTGTCATGATATTGTACTTCTG-GGTGTGACTCCA------G-CTGT--AAG--TCTCG-CAA--T--AG--------ATAAAC-T------C--T---CCAATACGTTCGGCT-A-TTCC---G-TAAA---TG-A-T---------AG----TTGTAAGGTAT--G--TCTTATAA-AGAA-AT-AAATCGAGTTA----AATATT-ATATTACA-AATTTAT--T-TTTTTCTAGAAAAGT-AGGCG-TT-TATTG-GCCATCTAA----ACACC--TATTTATTTAGT----TTTTAT-TTGATG---CGTGT--GAA--GTTAT-AC---AGA--CTTAATCA---AACAAAAG-CTTCAAATG-CACTG----TCA-----GTATCTGTA-GTAAAAAG---TGC-CGGGA-CCCGCTtc
gi|1 : ctaactgattagaatgttacacatttattcatttcaaatatcgtgggaataatatataaacaatattcaatggatatgtaaaatacacttcatactgtatagtaattttagacttggctgaaacgattttggcaagaaaatattacacactgtcacaaggtctttacatttgtaaccttttctttcctaaaatgacacttctgaattctcgtaaacgtgtcatgtgaattggtatttcttttcttatgcgacgaatggacatctgaaagcatccaacatgaagataattaaagtcaacacagggaaaaaaatcttgagttcaaataaaaacaacacaagagagtgggggggggggtaatagacctacgtacttgtatttattatAATAAAAAGCAAAT-TGTGTAATACATT-GT-ACACGCGTGTAGGAACAATTT-AGAAAGG---AAA--AACGAGAAT-TAT-TAGAGAATTTAACGTCTTT-GG-AAAA--AAACAAA-CCTAA-CTGATCAATTAA-----TT------C-CCCATATATGCGCCAC--CTT-CTGCTTGATAAAACTGA--------------CATTACGATCTGTG-----------C-----G--AACGTGGGGTTTGTAGGT-CC-GAACTATTTATTTAATCTG-CCT---T-ACT-CCGTAAATTCCC--AC-G-CCTTTCGAAGGC-TCAAACCTTACAAGGCCCCAAGGA-ACCT---TGCGTTTC-ACACAAA--ATCAGCTTTC----TTGCTAACTTTCTCGTCTCAGCATC-CGGTAAATAATGC---GTAAAGAAA-TTTTTGCC-CCACATCCTGTCAAAGAGAATTCTGTTCCTCGCTTGCATG--ATTGTA-T-CTGTGGTGTGAGTTCACCTGCTGGCTG---AAAGTTCTCG-C-A--T--ATGAAGCTATATAAAC-CTCACTAC--GGTTC--ATACTCTCGCCTTATTTTCCTCGCTAAATCGTACA-T----------A----TTGTAAGGTATCTGCTTTTTA-AA-AG-A-AT-AAATCGAGTTGTCTGTATATT-ATAATACA-AATTTATA-T-TTT---CAGAAAAGTGA-GCG-TT-AATTG-GTCATC-AA----AAACCTATATCTATTTA------TTCTTT-TTT-CA---TCT-----AACCGTTCTAGATATAGAC-TTAGTCAA---AAAAAGAGACTTCCTATG-AACTGTTCTGCA-----GTA----TG-GTAAAAAGCGATGCGCGGGATCCCGCTCT
gi|5 : cactggacatccttctttaataaaataatgctattgttaattaaatgattagaatttacacagttattatttattttttcatattgtgggaaatcaatatattcaattgtatatgtaatatacaatttgaaacaatttaaaacatgtataaatatacatgtattagtaatattgtaaagatttctgaaaacgattttgccaagaaaatataacactgcactaacaagtaaatcgttaacattctccctatacttttattctgtttctaaaatatgccacttactgaattcttctaaaaacttcatgtgattttcgggtattttctggtatgcgaacggacattgaaagcatgtccatacattgaataaaaaattaatggttcaacacaattagcgatagaaaaaatttgatgtttcaataaaaacatcacacaaggagctccacgggggtgaaggcggggtggattcagcaccctgacgtattctttttacttgtgctttattagctATAGCAAGCAAAA-TGAGTACA----T-AT-ACATGCATGTT--GTCAAATT-AGAT-AA---AAATCAA---TA---CATTTAAAGTATTTA-CGTCTAT-GG-AAAA--A--TATC-CC--A-C-GAC------A-----TT------C-TCC-----------TCTTCTTTCTG-----------CGG--------------C-----------TGA----------T-----G----CATT-G-TAT-TACG--TT-G------TTATC------A-ATT---CCACT----AAG-TTTCC--CC-TGACTTT-GG-GGT-TCAAACCT-GTAAGGTCG----GATATTTAAATGCATT-C-ACA-AAA--TTC-ACTTTC--A-TTA-T-ACTTT-TC-TCTCCGTAAT-CAGTAA----TG----GTCAAAAACCTTGTTG-TGTCACT----GTCAAAAGAA--CG-GTCC---ACAGTTGTG--CTTGTG-TTCTA-GGTGT---GTCGC--AATA-CTGTTAAAG--TCTCG-C-ATGT--GGGA-----TG-AAATAT------C--G---C--ACATGTTTGACC-ATTTCC---A-TAAA--ATATA-A---------AG----TTATACGGTAC--G-----AA-GAGAA-A-AA-AAATC----C-----TA-ACTC--AAG-CA-T--TTTT--T-TTT---TTCAAAAAT-----G-TA-CATT--ACTAAC-AAAGATACACT--TA
gi|7 : ctacttctgatttattcgtACTTTTTC-TCTCAGCGAT-CGGTAA----TGCATGGTAAAGAA--TTTTTATCACCA----------------------TTC---GCTGTCATG--ATTATG-TTCTG-AGTGTGACGTCAC--ACTT-TTA---AAG--TCTCGAT-A--T--AGGA-----TATAAAC-T------CTCG---C--ATACGTTCGGCT-ATTTCC---G-TAAA--GTACA-T---------AC----TAGTA--GT-T--G--T-----------A-AT-AAATCGAGTT-----TATATTCATAAGACA-AATCTATTAT-CTT---CAGAAAGGT-A-ACG-TA-TATTG-GC
gi|11 : TCTG-GGTGTGACGTCAC--GTTG-TTG---AAG--TCCCG-T-A--TGTAAGA-----TGAAATC-T------C--G---C--ATACGTTCGTTT-ATTTCC---G-TAAA--ATGCAGT---------AG----CTGTAAGGTAC--G--TTTGA-TG-AA-A-AT-AAATCG
gi|8 : TCGGCTCGTTCCC---G-TAAA---TCCA-TTCCGCAGAACAAGAGTTGTAAGGTAT--G--TTTTA-GA-AG-AGATAAAATCGAG-T-----TATCTTCATAGGACACA--TTAT--TATTT---CAGAAAAG--A-GCG-TA-TATTT-GCCATC--A----ACACC--TATTTTTC------GATT--------------CGT-G--GAA--GT----AAT--AGAACTTTATTAA---AAAAAAAG-CTTCG-ATGAAACTG----TCA-----GTAT---GG-TTTTAAAC---TG--CGGGA-CCC
gi|12 : AGT-A-GCGGTAATATTT-GGCATC-AA----ACACC--TATTTATT---TTAGTTTCTTTATTTTTGGATCGTGGTCGAA--GT----AA---AGA--CTTAAATC---AAAAAAAG-CTT---ATG-AACTG----TCA-----GTAT---a
gi|10 : T-A-GCG-TT-TGTTAAGCCAAC-TA----GCACC--TCTTGATTTAGTA-----TTTT-TATACGATGCATGT--GCA--GTC----------A--TTAGACTACTCAACAAAAG-CTCC--ATG-AATTG----TCA-----ATAT---TATGTAAAAAG---TGC-CGGGA-CCCGCTC
gi|13 : aatattgcatcatcctaaatgaatatttcattttctacattA---ACAAAAAG-CCCC--TTT-AACTG----CCAATGTTGTAT---TA-AAAAAAAG---TGT-CTTGA-CCCGCTCT
gi|14 : atctaattttttgtatacaatgggtgtgcaattactagtttcactcAAAAAAG-CTCC--ATG-AACTA----TCA-----ATAT---TG-GTTAAAAG---TCC-TGGGC-CCgt
gi|16 : gtatttcgttttttatacgatgcgtttaaaattattcgatttacttt-GTAAAAAG---TGC-CGGGA-CCCGCTCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 2 222222222 1 1 33333333 111 22 22 2222 44444444444444444 1111 777777777777 111111111111111111111111111111111111111111111111111111111111 1 111 1111 11111 111 11111 1111 111111 111111 1 111 444444444444444444444444444 111 111 111111 444444444444 1111 33 11 11 333333333 11 222222222 222222222 1 222222 111 2222222222 11 44444444444444444444444444444444 22222 333333333333 11 444444444 22222 11111 1111 1 111 1 111111 1111 1 1111 2222 11 11 333333 111 111 11 1111111 2 11111 22222222222 111 111 111 11111 22222 11 111 11 5555555555555555555555555555555555555555555555555555555 11111 111111 1111 11111
lowQualScore : 22 7 3 666666666 999 4 0 0 0 44444444 111 33 33 1 1111 55555555555555555 1 1111 0 777 666666666666 4 2 0 999999999999999999999999999999999999999999999999999999999999 1 1 88 0 999 3 111 6 6 2 4444 5 1 5 44444 000 5 00000 5 1 5 5 99 6 6 4444 999999 6 111111 55 1 77 6 3 6 888 777777777777777777777777777 1 888 111 6 6 6 111111 222222222222 4444 11 11 8 11 000000000 6 6 6 00 666666666 5 222222222 888 1 1 888888 6 333 6 6 7777777777 99999 6 6 55 99 6 99 6 6 00000000000000000000000000000000 1 99 7 99 33333 99 2 888888888888 6 2 99 5 8 666666666 00000 44444 8 8 8 7777 0 111 0 8 222222 9999 8 1 6 8 7777 9999 8 11 66 111111 8 444 444 2 11 88 6 2222222 8 6 888 99999 66666 3 11111111111 111 99 1 6 000 5 111 6 5 3 1 22222 9999 5 5 5 3 33333 6 66 55 6 111 5 5 5 66 5 00 99 5 0000000000000000000000000000000000000000000000000000000 66 2 33333 5 555555 5 0000 22222 888 5 888 5 5
lowQualScore : .. . . ......... ... . . . . ........ ... .. .. . .... ................. . .... . ... ............ . . . ............................................................ . . .. . ... . ... . . . .... . . . ..... ... . ..... . . . . .. . . .... ...... . ...... .. . .. . . . ... ........................... . ... ... . . . ...... ............ .... .. .. . .. ......... . . . .. ......... . ......... ... . . ...... . ... . . .......... ..... . . .. .. . .. . . ................................ . .. . .. ..... .. . ............ . . .. . . ......... ..... ..... . . . .... . ... . . ...... .... . . . . .... .... . .. .. ...... . ... ... . .. .. . ....... . . ... ..... ..... . ........... ... .. . . ... . ... . . . . ..... .... . . . . ..... . .. .. . ... . . . .. . .. .. . ....................................................... .. . ..... . ...... . .... ..... ... . ... . .
lowQualScore : 77 3 3 333333333 000 0 8 0 0 55555555 000 88 88 2 2222 22222222222222222 0 2222 8 222 000000000000 0 2 8 888888888888888888888888888888888888888888888888888888888888 0 0 88 6 222 2 777 7 7 5 2222 7 0 7 33333 000 7 11111 7 7 7 7 22 7 7 2222 222222 7 888888 88 0 77 7 3 7 555 777777777777777777777777777 0 000 777 7 7 7 888888 222222222222 2222 22 00 0 00 555555555 7 7 7 22 000000000 7 555555555 999 0 4 333333 7 222 7 7 2222222222 33333 7 7 88 22 7 22 7 7 77777777777777777777777777777777 0 22 3 22 33333 22 5 000000000000 7 5 00 6 0 000000000 88888 00000 0 0 0 0000 6 888 6 0 444444 8888 0 0 0 0 0000 0000 0 00 00 222222 0 222 000 8 00 88 7 3333333 0 7 777 33333 77777 5 22222222222 777 22 0 7 000 7 999 6 7 0 4 66666 7777 7 7 7 2 33333 7 77 88 7 777 0 0 7 77 7 22 22 7 0000000000000000000000000000000000000000000000000000000 99 2 88888 0 000000 0 6666 55555 888 0 888 0 0
consensus : NNACATCCTTCTTTT-AATAAAATAAATG-TATTGTAAA-TA-CGTATTAATGGGAAAGCCTTTTAAATGA-TTAGAAT-TTACACA-------TT-T-TTT--TTTCAA-TATCG----TGGG-------AA-TC---A-ATATAANTAATATTCCAATCGTAT--GG-A-ATGTAANATACAAT--T-----CGA-T----GACATGTA--AA-----ATGCATT--AGTA---TTGT-AA---TNCTGAAA-CGATTTTG-C-AGGAAAATATTAAACACTG---TCAC-A-GGT----C-TTNACA-TT-----TGTAACTTTATC---TTTC-TAAAA--T--GACACTT-CTGAATTCT-C-TAAA--CTT-TCATGTGA-TT----GGTATTTTC------TT-T---A--TGCGACAAATGNA-CAT-TGAA-GCATGTC-ATACATAATGAAT-AATAATTTAA--GTT-AAC-AAAA-CAACNACACAATGG--AAAAAAA---TTGA-GTT-CAA-TAAAAACA--A---CACAAGGAG----A------AGGGGG----GGGGGGGT--AT--AG-ACCT--ACG-T-------CTACTT-GTGATTTATTAG-T-AATAACAAGCAAAT-TGTGT--A------TA-TACGCGCGTGTAGT--C-AAT-TTAG-A-AATAANAAGCAAAT-TGTGTA------TAT-ACACGCGTGTAG--NCAATTT-AG-AAGGAAAA---AG-AA--TA--T-GTAAAGCATTT-ACGTCTTT-GG--AAAA--ACAAA-CC--A-C-GAT------A-----TT----C-CC----------CCAC--CTTTCTG--TG-----ACTGA--CATTACGATCT----G--GA---CGTTGGG-TTGTAGG--CCGAATTATCG-CTT-AA------TTACTCCGC-AATTCCCC--C-GGCCTTTCG-AGGC-TCAAACC-TATAAGGCCC----GATACCTA--TGCGTTCAACA-AAA--ATC-GCTTTC--A-TTG-TAACTTTCTC-TCTCAGCGAT-CGG----TAATGC---GTAAAG-AA--TTTTTGCCACCA---CCTGTCAAA-AGAAT--CGT---TCGCTGTCATG--ATTGTA-TTCTG-GGTGTGACGTCAC--GCT-GCTG-AAG-TCTCG-C-A--T--AGG-----ATATAAA--C-T------CG---C--ATACGTTCGGC-TATTT---CCG-TAAA--GTACA-TAGTTGTAAGGTA----CGTTTTA-GA-AG-A-AT-AAATCGAGTT-----TATATTCATAAGACAAATTTAT--T-TTT---CAGAAAAGT-A-GCG-TN-TATTG-GCCATC-AAACACC--TATTTA-TTTAGT----TTC-TTT-TTT------AC---G---CG-TG--CG---AAGTTT--AATAGA--CTTAA-CNAAAAAAAAG-CT--CC--ATG-AACTGT----CA-----GTAT---TG-GTAAAAAG---TGC-CGGGA-CCCGCTCT
Reference ( family-617 ) : NNACATCCTTCTTTTTAATAAAATAAATGCTATTGTAAATTA-CGTATTAATGGAAAAGCTTTTTAAATGA-TTAGAAT-TTACACG-------TT-T-TTT--TTTCA--TATTG----TGGG-------GA-TC---A-ATNTAATTAATATNCCAATNATATCGGG-AAATGTAATATATAAT--T-----CAA-T----GACATGTA--AA-----ATGCATT--AGTA---TTGTAAG---TNCTNAAA-CGATTTTG-C-AGGAAAATATTAAACACTG---TCAC-A-GGT----C-TTNACA-TT-----TGTAACTTTATC---TTTC-TAAAA--T--GACACTT-CTGAATTCT-C-TAAA--CTT-TCATGTGA-TT----GGTATTTTC------TT-T---A--TGCGACGAATGNA-CAT-TGAA-GCATGTC-ATACATAATGAAT-AATAATTNAA--GTT-AAC-AAAA-CAACNACACAATGG--GAAAAAA---TTGA-GTT-CAA-TAAAAACA--A---CACAAGGAG----A------AGGGGG----GGGGGGGTG-AT--AG-ACCT--ACG-T-------CTACTT-GTGATTTATTAG-T-AATAACAAGCAAAT-TGTGT--A------TA-TACACGCGTGTAGT--C-AA--TTAG-A-AATAANAAGCAAAT-TGTGTA------TAT-ACACGCGTGTAG--ACAATTT-AG-AAGGAAAA---AG-AA--TA--T-GTAAAGCATTT-ACGTCTTT-GG--AAAA--ACAAA-CC--A-C-GAT------A-----TT----C-CC----------CNAC--CTTTCTG--TG-----ACTGA--CATTACGATCT----G--GA---CGTTGGG-TTGTAGG--CCGAATTATCG-CTT---------TTACT-CGT-AATTCCCC--C-GGCCTTTCG-AGGC-TCAAACC-TATAAGGCCC----GATACCTA--TGCGTTCAACA-AAA--ATC-GCTTTC--A-TTG-TAACTTTCTC-TCTCAGCGAT-CGG----TAATGC---GTAAAG-AA--TTTTTGCCGCCA---CNTGTCAAA-AGAAT--CGT---TCGCTGTCGTG--ATTGTG-TTCTG-GGTGTGACGTCAC--GCT-GCTGTAAG-TCTCG-C-A--T--AGG-----ATATAAA--C-T------CG---C--ATACGTTCGGC-TATTT---CCG-TAAA--GTACA-TAGTTGTAAGGTA----CGTTTTA-GA-AG-A-AT-AAATCGAGTT-----TATATTCATAAGACAAATTTAT--T-TTT---CAGAAAAGT-A-GCG-TN-TATTG-GCCATC-AAACACC--TATTTA-TTTAGT---GTTC-TTT-TTT------AC---G---CG-TG--NG---AAGTTT--AATAGA--TTTAA-CNAAAAAAAAG-CT--CC--ATG-AACTGT----CA-----GTAT---TG-GTAAAAAG---TGC-CGGGA-CCCGCTCT
gi|1 : ACATCCTTCTTT--AATAAAATAA-TGCTATTGT------------TAAT------------TAAATGA-TTAGAAT-TTACACAGTTATTATT-TATTT--TTTCA--TATTG----TGGG-------AAATC---A-ATATA-TT-------CAATTGTAT-------ATGTAATATACAAT--TTGAAACAA-TTTAAAACATGTATAAATATACATGTATT--AGTAATATTGTAAAGATTTCTGAAAACGATTTTG-CCAAGAAAATAT--AACACTGCACTAAC-A-AGTAAATCGTTAACA-TTCTCCCTATACTTTTATTCTGTTTC-TAAAA--TATGCCACTTACTGAATTCTTC-TAAAAACTT--CATGTGA-TTTTCGGGTATTTTC------TGGT---A--TGCGA---ACGGA-CAT-TGAAAGCATGTCCATACAT--TGAAT-AAAAAATTAATGGTT---C-AACA-CAATTA-GCGATAG--AAAAAAT---TTGATGTTTCAA-TAAAAACATCA---CACAAGGAGCTCCA------CGGGGGTGAAGGCGGGGTGGATTCAGCACCCTGACG-TATTCTTTTTACTT-GTGCTTTATTAGCT-AATAAAAAGCAAAT-TGTGT--AATACATTG-TACACGCGTGTAGGAAC-AAT-TTAG-A-AAGGAAAAACGA
gi|1 : cactggA--TTAG-CTAATAAAAAGCAAAT-TGTGTAATACATTGT-ACACGCGTGTAGGAACAATTT-AGAAAGGAAAAACGAG-AAT-TA--T--TAGAGAATTTAACGTCTTT-GGAAAAAA--ACAAA-CCTAA-CTGATCAATTAA-----TT----C-CCCATATATGCGCCAC--C-TTCTGCTTGATAAAACTGA--CATTACGATCTGTGCG--AA---CGTGGGGTTTGTAGGT-CCGAACTATTT-ATTTAATCTGCCTTACTCCGTAAATTCCCA--C--GCCTTTCGAAGGC-TCAAACCTTACAAGGCCCCAAGGA-ACCT---TGCGTTTCACACAAA--ATCAGCTTTC----TTGCTAACTTTCTCGTCTCAGCATC-CGGTAAATAATGC---GTAAAGAAA--TTTTTGCC-CCACATCCTGTCAAAGAGAATTCTGTTCCTCGCTTGCATG--ATTGTA--TCTGTGGTGTGAGTTCACCTGCTGGCTGAAAGTTCTCG-C-A--T--ATGAAGCTATATAAA--C-CTCACTACGGTTC--ATACTCTCGCCTTATTTTCCTCGCTAAATCGTACA-TA-TTGTAAGGTATCTGCTTTTTA-AA-AG-A-AT-AAATCGAGTTGTCTGTATATT-ATAATACAAATTTATA-T-TTT---CAGAAAAGTGA-GCG-TT-AATTG-GTCATC-AAAAACCTATATCTA-TTTA------TTC-TTT-TTTCATCTAAC-------CG-TT--CT---AGAT-----ATAGA--CTTAGTCAAAAAAAGAGACTTCCT--ATG-AACTGTTCTGCA-----GTA----TG-GTAAAAAGCGATGCGCGGGATCCCGCTCTgaattattagagaatttaacgtctttggaaaaaaacaaacctaactgatcaattaattccccatatatgcgccaccttctgcttgataaaactgacattacgatctgtgcgaacgtggggtttgtaggtccgaactatttatttaatctgccttactccgtaaattcccacgcctttcgaaggctcaaaccttacaaggccccaaggaaccttgcgtttcacacaaaatcagctttcttgctaactttctcgtctcagcatccggtaaataatgcgtaaagaaatttttgccccacatcctgtcaaagagaattctgttcctcgcttgcatgattgtatctgtggtgtgagttcacctgctggctgaaagttctcgcatatgaagctatataaacctcactacggttcatactctcgccttattttcctcgctaaatcgtacatattgtaaggtatctgctttttaaaagaataaatcgagttgtctgtatattataatacaaatttatattttcagaaaagtgagcgttaattggtcatcaaaaacctatatctatttattcttttttcatctaaccgttctagatatagacttagtcaaaaaaagagacttcctatgaactgttctgcagtatggtaaaaagcgatgcgcgggatcccgctct
gi|10 : cactggacatccttctttaataaaataatgctattgttaattaaatgattagaatttacacagttattatttattttttcatattgtgggaaatcaatatattcaattgtatatgtaatatacaatttgaaacaatttaaaacatgtataaatatacatgtattagtaatattgtaaagatttctgaaaacgattttgccaagaaaatataacactgcactaacaagtaaatcgttaacattctccctatacttttattctgtttctaaaatatgccacttactgaattcttctaaaaacttcatgtgattttcgggtattttctggtatgcgaacggacattgaaagcatgtccatacattgaataaaaaattaatggttcaacacaattagcgatagaaaaaatttgatgtttcaataaaaacatcacacaaggagctccacgggggtgaaggcggggtggattcagcaccctgacgtattctttttacttgtgctttT-A-GCG-TT-TGTTAAGCCAAC-TAGCACC--TCTTGA-TTTAGT---ATT---TT-TAT------AC---GATGCA-TG--TG---CAGTC---ATTAGA--CT--A-CTCAACAAAAG-CT--CC--ATG-AATTGT----CA-----ATAT---TATGTAAAAAG---TGC-CGGGA-CCCGCTC
gi|11 : aatattgcatcatcctaaatgaatatttcattttctacattTCTG-GGTGTGACGTCAC--GTT-GTTG-AAG-TCCCG-T-A--TGTAAG-----ATGAAAT--C-T------CG---C--ATACGTTCGTT-TATTT---CCG-TAAA--ATGCAGTAGCTGTAAGGTA----CGTTTGA-TG-AA-A-AT-AAATCG
gi|12 : AGT-A-GCGGTAATATTT-GGCATC-AAACACC--TATTTATTTTAGT----TTC-TTTATTT------TT---GGATCG-TGGTCG---AAG--T--AA-AGA--CTTAA-ATCAAAAAAAG-CT---T--ATG-AACTGT----CA-----GTAT---
gi|13 : A-TCTAAT----TTT-TTG-TAT------ACAATG---GG-TG--TG---CAATT---ACTAGT--TTCAC-TCAACAAAAAG-CC--CC--TTT-AACTGC----CAATGTTGTAT---TA-AAAAAAAG---TGT-CTTGA-CCCGCTCT
gi|14 : TTCGTTT-TTT------AT---A---CGATG--CGTTTAAAATT--ATTCGA--TTTA--CTTTAAAAAAG-CT--CC--ATG-AACTAT----CA-----ATAT---TG-GTTAAAAG---TCC-TGGGC-CCgt
gi|15 : gtatAATATTAAACCCTG---TCAC-A-G------T-TTCACA-TT-----CCTAGCTTTCTC---TTCC-TAAAAATT--GACACTT-CAGAAGTTT-C-
gi|16 : -GTAAAAAG---TGC-CGGGA-CCCGCTCT
gi|2 : ACAGCCTTCTTGT-GATAATATAAATG-TATTGTAAAATAACATATTAATGGGAAAGCCTTTTAAGTGA-TTAGAAT-TTACACA-------TT-T-TTT--TTTCA--TAAAGGGCCTGGACCTTTATGA-TTGAAA-ATATAAGAAACATATCTATCATATTGGGGAAAGGCAATATATAATCTT-----CGACT----GATATGTA--AA-----ATGCATT--A-TA---TTGT------TGCTGAAA-TGATTT-G-C-AGGACAATATTAA-CAATG---TCAC-A-GGT----C-TGAACA-TT-----TGTAACTTTATG---T--C-TAAAA--T--GACACTT-CTGAATACT-C-TAAA--CTT-TCATGTGA-TT----GGTATTTTC------AT-T---A--TGTGACAAATGCA-TAT-TGAA-GCATGTC-ATACACAATAAATTAATGATTTAA--GTTTAAC-AAAAACAACAACACAATGG--GGAAACA---TTGA-GTT-CAA-TGAAAACA--A---CACAAGGAA----A------AGGGGG----AAGGGGGT--AT--AG-ACCT--ACG-T-------CTTCTT-GTGATTTATTAG-T-GATCACATGCAAAT-TGTGT--A------TA-TACACGCGTGTAGT--C-----TTAG-A-AATAACAAGCAAAT-TGTGTA------TAT-ACACGCGTGTAA--TCAATTT-AG-AAGGAAAA---AG-A---TA--T-GTAAAGCATTT-ACGTCTTC-GG--AAAA--ACAAA-CC--A-C-GAT------A-----TT----C-CC----------CAAC--CTTTCTG--TG-----ACTG-------------T----G--AA---CGTTGGT-TTGTAGG--CCGA-TTATCG-CTT---------TTACT-CGC-AATTCCCT--C-GGCCTTTCG-AGGC-TCAAACC-TATAAGACAC----GATACCTA--TGCGTTCA-CA-AAA--ATC-GCTTTC--A-TTG-TAACTTTCTC-TCTCAGCGAT-CGG----TAATG----GTAAAG-AA--TTTTTACCATCA---CA-GTCAAA-AAAAT--CGT---TCGCTGTCATG--ATTGTA-TTCTG-GGTGTGACGTCAC--GAT-GCTG-AAG-TATAG-C-A--T--AGG-----ATATAAA--C-T------CG---C--ATACGTTCGGC-TATTT---CCG-TAAA--GTACA-TCATTGTAAGGTA----TGTTTTA-GA-AG-A-AT-AAATCGAGTT-----TATATTCATAAGACAA--TTAT--T-TTT---CAGAAAAGT-A-GCG-TA-TATTG-GCCATC-AAACACT--TATTTA-TTAAGTGGGGTTT-TTT-TTT------AC---G---CG-TG--GG---AAGTTTTGAA-AGA--TTAAA-AAAAAAAAAAG-CT--TC--ATG-ACCTGG----CA-----GTAT---TG-GTAAAAAG---TGC-CGGGA-CCCGCTCTttaa
gi|3 : ttTAACTGA-TTAGAATGTTACACA-------TT-T-ATTCATTTCAAATATCG----TGGG-------AA-TA---ATATATAAACAATATTC-AAT-------GG-ATATGTAAAATACACT--T-----CA--T-----AC-TGTA--TA-----GTA-ATTTTAGAC---TTG--------GCTGAAA-CGATTTTGGC-AAGAAAATATTACACACTG---TCAC-AAGGT----C-TTTACA-TT-----TGTAACCTTTTC---TTTCCTAAAA--T--GACACTT-CTGAATTCT-CGTAAA--CGTGTCATGTGAATT----GGTATTTCT------TT-TCTTA--TGCGACGAATGGA-CATCTGAAAGCAT-CC-A-ACAT---GAA--GATAATTAAA--GT--------------CAACACA--GG--GAAAAAAATCTTGA-GTT-CAAATAAAAACA--A---CACAAG-AG----A------GTGGGG----GGGGGGGTA-AT--AG-ACCT--ACG----------TACTT-GT-ATTTATTA--T-AATAACAAGCAAATCTGTGT--A------TATTCCGCGCGTGTATA--C-AATTTTAG-A-AGGAAAAAAAAAA
gi|3 : c-TACGTACTTGTATT--T-A---TTAT-A-A-TAACAAGCAAATCTGTGTA------TATTCCGCGCGTGTAT--ACAATTTTAG-AAGGAAAA---AA-AAAAGA--T-GTAAAGCATT--ACTCTTTT-GGC-AAAATCATAAA-CC--A-C-GAT------A-----TTATTCCACC----------CCAC--CTT-CTG--TG-----ACTGA--CATTACGATCTAC--G--GAGACCGTTGGG-TTGTAAGGCCCGAATCATCG-CTT---------TTACTCCGT-AATTCCCC--CAGGC--TTCG-AGGC-TCAAACC-TATAA-GCCC----GA-ACCTA--TGCGTTCAACA-AAA--AT--GCGTTCAAA-TTG-TAAC-TTCTCTTCTCAGCGATCCGG----TAAT-----GTAAAA-AA--TTTTTGCCA-CA---CCTGTCAAA-AGAAT--CGT---TCGCTGTCATGATATTGTACTTCTG-GGTGTGACTCCA-------GCTGTAAG-TCTCG-CAA--T--AG--------ATAAA--C-T------CT---CCAATACGTTCGGC-TA-TT---CCG-TAAA---TG-A-TAGTTGTAAGGTA----TGTCTTATAA-AGAA-AT-AAATCGAGTTA----AATATT-ATATTACAAATTTAT--T-TTTTTCTAGAAAAGT-AGGCG-TT-TATTG-GCCATCTAAACACC--TATTTA-TTTAGT----TTT-TAT-TTG------AT---G---CG-TG--TG---AAGTTA--TACAGA--CTTAA-TCAAACAAAAG-CT--TCAAATG-CACTGT----CA-----GTATCTGTA-GTAAAAAG---TGC-CGGGA-CCCGCTgatgtaaagcattactcttttggcaaaatcataaaccacgatattattccaccccaccttctgtgactgacattacgatctacggagaccgttgggttgtaaggcccgaatcatcgcttttactccgtaattcccccaggcttcgaggctcaaacctataagcccgaacctatgcgttcaacaaaaatgcgttcaaattgtaacttctcttctcagcgatccggtaatgtaaaaaatttttgccacacctgtcaaaagaatcgttcgctgtcatgatattgtacttctgggtgtgactccagctgtaagtctcgcaatagataaactctccaatacgttcggctattccgtaaatgatagttgtaaggtatgtcttataaagaaataaatcgagttaaatattatattacaaatttatttttttctagaaaagtaggcgtttattggccatctaaacacctatttatttagtttttatttgatgcgtgtgaagttatacagacttaatcaaacaaaagcttcaaatgcactgtcagtatctgtagtaaaaagtgccgggacccgct
gi|4 : ctaactgattagaatgttacacatttattcatttcaaatatcgtgggaataatatataaacaatattcaatggatatgtaaaatacacttcatactgtatagtaattttagacttggctgaaacgattttggcaagaaaatattacacactgtcacaaggtctttacatttgtaaccttttctttcctaaaatgacacttctgaattctcgtaaacgtgtcatgtgaattggtatttcttttcttatgcgacgaatggacatctgaaagcatccaacatgaagataattaaagtcaacacagggaaaaaaatcttgagttcaaataaaaacaacacaagagagtgggggggggggtaatagaccACATCCTTCTTTTTAATAAAATAAATG-TATTGTAAATTA-CGTATTAATGGAAAAGCTTTTTAAAAGAATTAGAAT-TTACACG-------TTAT-TTTA-TTTCAA-TATTG----TGGG-------AA-TC---A-ATATAATTAATATTCCAATGAT---------ATGTAAAATACAGT--T-------A-T-----ACATGTA-------------ATT--AGTA---T----AA---TTTTAGA------TTTG-C-AGGAAAATATTAACAACTG---TCACAA-GGT----C-TTTACATTT-----TGTAACTTTATC---TTTC--AAAA--T--GACACTT-CTGAATTCT-C-TAAA--CTT-TCATGTGA-TT----GGTATTTTC------TT-T---A--TGCGATAAATGTAGCAT-TGAA-GCATGCC-ATACATGATAAA--------TTAA--GTT-------------CAACACAATGGAAAAAAAAA---TTGA-GTT-CAA-TAAAAACA--ATACCACAAGGAG----AATGGGGAGGGGG----GGGGGGGT--AT--AG-ACCT--ACGTT-------CTACTTGGTGATGTATTAG-TAAATAACAAGCAAA--TATGT--AT-----TA-TACATGCGTGTAGA--C-AAT-TTAG-A-AGGGAAAAAAAGAT-TGT
gi|4 : ctgA--TTAGTA-AATAACAAGCAAATATGTAT-------TAT-ACATGCGTGTAG--ACAATTT-AG-AAGGGAAA---AA-AA--GA--TTGTAAAGCATTT-ACGTCTTTTGG--AAAA--ACAAAACC--ATC-GAT------AATTATTC----C-CC----------CCAC--CTT-CTG--TGG----ACTGA--CATTACGATCT----GTGGA---CGTTGGG-TT-TAGG--CCCGATTATCGGCTTAAA------TTACT-CGC-AATTCCCCTTC-GGCCTTTCG-AGGCCTCAAACC-TATAAGGCCC----GATACCTA--TGCGTTTAACG-AAACCGTT-GCTTTC--ATTTG-TAACTTTCTaaagcatttacgtcttttggaaaaacaaaaccatcgataattattccccccaccttctgtggactgacattacgatctgtggacgttgggtttaggcccgattatcggcttaaattactcgcaattccccttcggcctttcgaggcctcaaacctataaggcccgatacctatgcgtttaacgaaaccgttgctttcatttgtaactttcttc
gi|5 : ctgacatccttctttttaataaaataaatgtattgtaaattacgtattaatggaaaagctttttaaaagaattagaatttacacgttattttatttcaatattgtgggaatcaatataattaatattccaatgatatgtaaaatacagttatacatgtaattagtataattttagatttgcaggaaaatattaacaactgtcacaaggtctttacattttgtaactttatctttcaaaatgacacttctgaattctctaaactttcatgtgattggtattttctttatgcgataaatgtagcattgaagcatgccatacatgataaattaagttcaacacaatggaaaaaaaaattgagttcaataaaaacaataccacaaggagaatggggaggggggggggggtatagacctacgttctacttggtgatgt-------CTACTT-CTGATTTATTCG-T-A-TAGCAAGCAAAA-TGAGTACA------TA-TACATGCATGTTGT--CAAA--TTAG----ATAAAAATCAAtc
gi|5 : ATAGCAAGCAAAA-TGAGTACA----TAT-ACATGCATGTTG--TCAAATT-AG-A--TAAAA---ATCAA--TACAT-TTAAAGTATTT-ACGTCTAT-GG--AAAA--ATATC-CC--A-C-GAC------A-----TT----C-TC----------CT-CTTCTTTCTG--CG-----GCTGATGCATTGT-ATT---------A---CGTTG-----------------TTATCA-ATT---------CCACT-A---AGTTTCCC--C-TGACTTT-G-GGGT-TCAAACC-TGTAAGGTCG----GATATTTAAATGCATTCA-CA-AAA--TTC-ACTTTC--A-TTA-TA-CTTT-TC-TCTCCGTAAT-CAG----TAATG----GTCAAA-AACCTTGTTGT-GTCA---C-TGTCAAA-AGAAC--GGT---CCACAGTTGTG--CTTGTG-TTCTA-GGTGTGTCGCAAT--ACT-GTTA-AAG-TCTCG-C-ATGT--GGG-----ATG-AAA--TAT------CG---C--ACATGTTTGAC-CATTT---CCA-TAAA--ATATA-AAGTTATACGGTA----CG---AA-GAGAA-A-AA-AAATC----C-----TA-ACTC--AAG-CATTTTTTT--T-TTT---CAAAAATGT-A-tacatttaaagtatttacgtctatggaaaaatatcccacgacattctcctcttctttctgcggctgatgcattgtattacgttgttatcaattccactaagtttcccctgactttggggttcaaacctgtaaggtcggatatttaaatgcattcacaaaattcactttcattatacttttctctccgtaatcagtaatggtcaaaaaccttgttgtgtcactgtcaaaagaacggtccacagttgtgcttgtgttctaggtgtgtcgcaatactgttaaagtctcgcatgtgggatgaaatatcgcacatgtttgaccatttccataaaatataaagttatacggtacgaagagaaaaaaaatcctaactcaagcatttttttttttcaaaaatgtacattactaacaaagatacactta
gi|6 : ctacttctgatttattcgt-TTTACA-TT-----TGTAACTTTATC---TTTC-TAAAA--T--AACACTT-TTGAATTCT-C-TAAA--CTT-TCATGTGA-TT----GTTATTTTTTTTAAGTT-T---A--TGTGACAAATGTA-CAT-TGAA-ACATGTC-ATAC---ATGAAT-AAT--TTTAG--TTT-AACAAAAA-CAACTACACAATGGA-AAAAAAA---ATGA-TTT-CAA-TAAAAGCA--A---CACAAGGTG----A-----------------GGGGGGT--AT--AG-ACCT--ATG-T-------CTAATT-GTGGTTTATTAG-T-AATAACAAGCACAT-TATGT--A------TA-TACACGCATGTAGT--C-AAT-TTAG-A-Acattactaacaaagatacactta
gi|6 : TGTGGT--T-TA--TTAG-T-AATAACAAGCACAT-TATGTA------TAT-ACACGCATGTAG--TCAATTT-AG-AAGGGGGA------AA--TA--T-GTAATGCATTT-ACGTCTTT-GA--AAAA--ACAAA-CC--A-T-GAT------A-----TT----CTCC----------CCAC--CTTTCTA--TA-----ACTGA--CATTACGATCT----GTTGA---CGTTGGG-TTGTAgggggaaatatgtaatgcatttacgtctttgaaaaaacaaaccatgatattctccccacctttctataactgacattacgatctgttgacgttgggttgta
gi|7 : tttacatttgtaactttatctttctaaaataacacttttgaattctctaaactttcatgtgattgttattttttttaagtttatgtgacaaatgtacattgaaacatgtcatacatgaataattttagtttaacaaaaacaactacacaatggaaaaaaaaatgatttcaataaaagcaacacaaggtgaggggggtatagacctatgtctaatACTTTTTC-TCTCAGCGAT-CGG----TAATGCATGGTAAAG-AA--TTTTTATCACCA----------------------T---TCGCTGTCATG--ATTATG-TTCTG-AGTGTGACGTCAC--ACT-TTTA-AAG-TCTCGAT-A--T--AGG-----ATATAAACTC-T------CG---C--ATACGTTCGGC-TATTT---CCG-TAAA--GTACA-TACTAGTA----------GTTGT--------A-AT-AAATCGAGTT-----TATATTCATAAGACAAATCTATTAT-CTT---CAGAAAGGT-A-ACG-TA-TATTG-GC
gi|8 : TT---CCG-CAGA--ACA-A-GAGTTGTAAGGTA----TGTTTTA-GA-AG-AGATAAAATCGAG-T-----TATCTTCATAGGACACA-TTAT--TATTT---CAGAAAAG--A-GCG-TA-TATTT-GCCATC--AACACC--TATTT------------TTC-GAT-T-----------------CG-TG---G---AAG--T--AATAGAACTTTAT-TAAAAAAAAAG-CT--TCG-ATGAAACTGT----CA-----GTAT---GG-TTTTAAAC---TG--CGGGA-CCC
gi|9 : tcggctcgttcccgtaaatcca---TACTCACA-CAATTT-G-T-AGGAAAATATTAAATACTG---TAAC-A-GTT----C---AGCA-TT-----TGTAACTTTATC---TTTA-TGAA------------T-C--AATT------------TG-TCA---GA-TA----GGTATTTTC------TT-T---AAGAGTGACAAATGCA-----------CATGTC-ATA---AATGAA--A--AATTGAA--TTG-AAC-AAAAGCAACCAa
gi|9 : ttatcattAATG-----AAAAA---TTGA-ATT-GAA-CAAAAGCA--A---C-CAAGGAG------------GGGGG----AGGGGGGTaggaggggggaggggggtcacattcagttg
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 1 44444444444 1 1 3333333 111 22 111 55555555555555 11 1 1 111 66666666666666 000000000000000000000000000000000000000000000000000000000000 111 111 11111 11111 111 11111 1111 3333333333 22 444444444444444444444444444444444 11 111 111111 444444444444 1111 11 11 11 33333333 11 222222222 1 222222 111 33333333333333333 333333333333333333333333333333333 1 1111111 333333333333 11 4444444444444444 1 11 11 1111 1 111 1 111111 111 1111 3333 1111 33333333 111 111 11 111 22 11111 22222222222 111 111 111 11111 222222 11 111 11111111 4444444444444444444444444444444444444444 11111 111111 1111 11111
lowQualScore : 00 7 3 44444444444 7777 3 0 0 0 2222222 111 33 666 88888888888888 2 33 0 55 0 555 0 66 66666666666666 1 0 666666666666666666666666666666666666666666666666666666666666 1 8 0 666 3 111 6 6 66666 5 1 5 44444 000 5 33333 5 1 5 9999 3 6 6 4444 6 1111111111 1 77 6 6 6 6 11 666666666666666666666666666666666 1 1 99 55 000 6 111111 222222222222 4444 55 11 8 11 44444444 6 6 88 00 666666666 5 1 777 5555 4 1 1 888888 6 000 6 6 55555555555555555 6 6 6 99999 6 99 6 6 777777777777777777777777777777777 5 99 6666666 99 2 888888888888 99 99 5 2222222222222222 0 0 11 8 11 8 8 8 8 3 7777 0 111 0 8 222222 999 8 1 8 8 8 7777 4444 8 7777 0 55555555 8 444 444 11 8 6 000 77 99 6 55 66666 3 11111111111 111 99 1 6 000 5 111 6 5 3 1 22222 9999 5 5 5 000000 6 6 3 55 6 111 5 5 5 66 5 6 1 99 5 1 22222222 5 0 7777777777777777777777777777777777777777 66 2 33333 5 555555 5 0000 22222 888 5 888 5 5
lowQualScore : .. . . ........... .... . . . . ....... ... .. ... .............. . .. . .. . ... . .. .............. . . ............................................................ . . . ... . ... . . ..... . . . ..... ... . ..... . . . .... . . . .... . .......... . .. . . . . .. ................................. . . .. .. ... . ...... ............ .... .. .. . .. ........ . . .. .. ......... . . ... .... . . . ...... . ... . . ................. . . . ..... . .. . . ................................. . .. ....... .. . ............ .. .. . ................ . . .. . .. . . . . . .... . ... . . ...... ... . . . . . .... .... . .... . ........ . ... ... .. . . ... .. .. . .. ..... . ........... ... .. . . ... . ... . . . . ..... .... . . . ...... . . . .. . ... . . . .. . . . .. . . ........ . . ........................................ .. . ..... . ...... . .... ..... ... . ... . .
lowQualScore : 77 3 3 33333333333 7777 7 8 0 0 5555555 000 88 555 88888888888888 0 88 0 88 0 000 8 00 88888888888888 0 8 000000000000000000000000000000000000000000000000000000000000 0 0 8 666 2 777 7 7 77777 7 0 7 33333 000 7 77777 7 7 7 9999 2 7 7 2222 7 0000000000 0 77 7 7 7 7 00 333333333333333333333333333333333 0 0 22 88 222 7 888888 222222222222 2222 88 00 0 00 88888888 7 7 33 22 000000000 7 4 444 8888 4 0 4 333333 7 222 7 7 55555555555555555 7 7 7 33333 7 22 7 7 333333333333333333333333333333333 5 22 8888888 22 5 000000000000 22 00 6 2222222222222222 8 0 00 0 00 0 0 0 0 2 0000 6 888 6 0 444444 888 0 0 0 0 0 0000 0000 0 0000 8 44444444 0 222 000 00 0 7 222 33 22 7 00 77777 5 22222222222 777 22 0 7 000 7 999 6 7 0 4 66666 7777 7 7 7 222222 7 7 5 88 7 777 0 7 7 77 7 7 7 22 7 7 44444444 0 5 1111111111111111111111111111111111111111 99 2 88888 0 000000 0 6666 55555 888 0 888 0 0
consensus : NNACATCCTTCTTTT-AATAAAATAAATG-TATTGTAAA-T-A-CGTATTAATGGGAAAGCCTTTTAAATGA-TTAGAAT-TTACAC-------ATT-T-TTT--TTTCAA-TA--------------TTGTGG--G-AATCA-ATATAANNAATATTCCAATCGTAT----GGATATGTAANATACAAT--T-----CGA-T----GACATGTA-AA------ATGCATT--AG---TATTGTAA----TNCTG-AAACGATTTTG-CAGGAAAATATTAAACACTG---TCAC-A-GG----TC-TTNACA-TT-----TGTAACTTTATC---TTTC-TAAA--A--TGACACTT-CTGAATTC-TC-T--AAACTT-TCATGTGA-TT----GGTATTTTCT-TT---A------TGCGACAAATGNA-CAT-TG-AA-GCATGT-CATACATAATGAAT-AATAATTTAA--G-TT-AACAAA---A-CA-ACNACACAATGG--AAAAAAAT--TGA-G-TTCAA-TAAAAACA--A---CACAAGGAG----A------AGGGGG----GGGGGGGT--AT--AG-ACCT--ACGT------TCTACTT-GTGATTTATTAG-T-AATAACAAGCAAAT-TGTGT--A------TA-TACGCGCGTGTAGT--CAA-TTTAG-AAATAANAAGCAAAT-TGTGTA------TAT-ACACGCGTGTAGN--CAATTT-AGAA-GGAAAAA---G-AA--T-A--T-GTAAAGCATTTA-CGTCTTT-GG-AAAA--A--CAAA-CC--A-C-GAT------A-----TT----C-CCC----------CACCTTTCTG--TG-A-----CTGA--CATTACGATCT--GT---GA---CGTTGGGTT-GTAGG--CCGAATTATC-G-CTTAA-T------TACTCCGC--AA-TTCCCC--C-GGCCTTTCGA-GGC-TCAAACCT-ATAAGGCCC----GATACCTA--TGCGTTCAACA-AAA--ATC-GCTTTCA--TTG-TAACTTTCTC-T-CTCAGCGATC-GGTAA----TGC---GTAAAGAA-TTTT----TGCCACCAC---CTGTCAAA-AGAATC--GTTC---GCTGTCATGAT--TGTA-TTCTG-GGTGTGACGTCAC--GCTG-TTGAAG--TCTCG-CA--TAGGA-----TATAAA--C-T------CG---C--ATACGTTCGGCT-ATTTCC---G-TAAA--GTACA-TAGTTGTAAGGTA----CGTTTTA-GA-AGA-A-TAAA-TCGAGTT-----TA-TATTCATAAGACAAATTTAT--T-TTTC---AGAAAAGT-AG-CG-TN-TATTG-GCCATC-AAACACCTAT--TTA-TTTAGT----TTC-TTT-TTT------AC-----G---CG-TG--CG---AAGTTT--AATAGA--CTTAA-CNAAAAAAAAG-CT--CC--ATGAA-CTGT----CA-----GTAT---TG-GTAAAAAG---TGC-CGGGA-CCCGCTCT
Reference ( family-617 ) : NNACATCCTTCTTTT-AATAAAATAAATG-TATTGTAAA-T-A-CGTATTAATGGGAAAGCCTTTTAAATGA-TTAGAAT-TTACAC-------ATT-T-TTT--TTTCAA-TA--------------TCGTGG--G-AATCA-ATATAANTAATATTCCAATCGTAT----GGA-ATGTAANATACAAT--T-----CGA-T----GACATGTA-AA------ATGCATT--AG---TATTGTAA----TNCTG-AAACGATTTTG-CAGGAAAATATTAAACACTG---TCAC-A-GG----TC-TTNACA-TT-----TGTAACTTTATC---TTTC-TAAA--A--TGACACTT-CTGAATTC-TC-T--AAACTT-TCATGTGA-TT----GGTATTTTCT-TT---A------TGCGACAAATGNA-CAT-TG-AA-GCATGT-CATACATAATGAAT-AATAATTTAA--G-TT-AACAAA---A-CA-ACNACACAATGG--AAAAAAAT--TGA-G-TTCAA-TAAAAACA--A---CACAAGGAG----A------AGGGGG----GGGGGGGT--AT--AG-ACCT--ACG-------TCTACTT-GTGATTTATTAG-T-AATAACAAGCAAAT-TGTGT--A------TA-TACGCGCGTGTAGT--CAA-TTTAG-AAATAANAAGCAAAT-TGTGTA------TAT-ACACGCGTGTAGN--CAATTT-AGAA-GGAAAAA---G-AA--T-A--T-GTAAAGCATTTA-CGTCTTT-GG-AAAA--A--CAAA-CC--A-C-GAT------A-----TT----C-CCC----------CACCTTTCTG--TG-A-----CTGA--CATTACGATCT--G----GA---CGTTGGGTT-GTAGG--CCGAATTATC-G-CTTAA-T------TACTCCGC--AA-TTCCCC--C-GGCCTTTCGA-GGC-TCAAACCT-ATAAGGCCC----GATACCTA--TGCGTTCAACA-AAA--ATC-GCTTTCA--TTG-TAACTTTCTC-T-CTCAGCGATC-GGTAA----TGC---GTAAAGAA-TTTT----TGCCACCAC---CTGTCAAA-AGAATC--GTTC---GCTGTCATGAT--TGTA-TTCTG-GGTGTGACGTCAC--GCTG-CTGAAG--TCTCG-CA--TAGGA-----TATAAA--C-T------CG---C--ATACGTTCGGCT-ATTTCC---G-TAAA--GTACA-TAGTTGTAAGGTA----CGTTTTA-GA-AGA-A-TAAA-TCGAGTT-----TA-TATTCATAAGACAAATTTAT--T-TTTC---AGAAAAGT-AG-CG-TN-TATTG-GCCATC-AAACACCTAT--TTA-TTTAGT----TTC-TTT-TTT------AC-----G---CG-TG--CG---AAGTTT--AATAGA--CTTAA-CNAAAAAAAAG-CT--CC--ATGAA-CTGT----CA-----GTAT---TG-GTAAAAAG---TGC-CGGGA-CCCGCTCT
gi|1 : ACATCCTTCTTT--AATAAAAT-AATGCTATTG-------------TTAA------------TTAAATGA-TTAGAAT-TTACACAGTTATTATT-TATTT--TTTC-A-TA--------------TTGTGG--GAAATCA-ATATA--------TTCAATTGTAT--------ATGTAATATACAAT--TTGAAACAA-TTTAAAACATGTATAAATATACATGTATT--AGTAATATTGTAAAGATTTCTGAAAACGATTTTGCCAAGAAAATAT--AACACTGCACTAAC-A-AGTAAATCGTTAACA-TTCTCCCTATACTTTTATTCTGTTTC-TAAAATA--TGCCACTTACTGAATTCTTC-TAAAAAC-T-TCATGTGA-TTTTCGGGTATTTTCTGGT---A------TGCG---AACGGA-CAT-TGAAA-GCATGTCCATACAT--TGAAT-AAAAAATTAATGG-TT---CAAC---A-CA-ATTA-GCGATAG--AAAAAATT--TGATGTTTCAA-TAAAAACATCA---CACAAGGAGCTCCA------CGGGGGTGAAGGCGGGGTGGATTCAGCACCCTGACGTATTCTTTTTACTT-GTGCTTTATTAGCT-AATAAAAAGCAAAT-TGTGT--AATACATTG-TACACGCGTGTAGGAACAA-TTTAG-AAAGGAAAAACGA
gi|1 : cactggAATAAAAAGCAAAT-TGTGTAATACATTGT-ACACGCGTGTAGGAACAATTT-AGAAAGGAAAAACGAG-AA--TTA--T--TAGAGAATTTAACGTCTTT-GG-AAAA--AAACAAA-CCTAA-CTGATCAATTAA-----TT----C-CCCATATATGCGCCACCTT-CTGCTTG-ATAAAACTGA--CATTACGATCT--GTGCGAA---CGTGGGGTTTGTAGGT-CCGAACTATTTA-TTTAA-TCTGCCTTACTCCGT--AAATTCCCA--C-G-CCTTTCGAAGGC-TCAAACCTTACAAGGCCCCAAGGA-ACCT---TGCGTTTCACACAAA--ATCAGCTTTC---TTGCTAACTTTCTCGT-CTCAGCATCC-GGTAAATAATGC---GTAAAGAAATTTT----TGCC-CCACATCCTGTCAAAGAGAATTCTGTTCCTCGCTTGCATGAT--TGTA-T-CTGTGGTGTGAGTTCACCTGCTGGCTGAAAGTTCTCG-CA--TATGAAGCTATATAAA--C-CTCACTACGGTTC--ATACTCTCGCCTTATTTTCCTCGCTAAATCGTACA-TA-TTGTAAGGTATCTGCTTTTTA-AA-AGA-A-TAAA-TCGAGTTGTCTGTA-TATT-ATAATACAAATTTATA-T-TTTC---AGAAAAGTGAG-CG-TT-AATTG-GTCATC-AAAAACCTATATCTA-TTTA------TTC-TTT-TTTCATCTAAC---------CG-TT--CT---AGAT-----ATAGA--CTTAGTCAAAAAAAGAGACTTCCT--ATGAA-CTGTTCTGCA-----GTA----TG-GTAAAAAGCGATGCGCGGGATCCCGCTCTgaattattagagaatttaacgtctttggaaaaaaacaaacctaactgatcaattaattccccatatatgcgccaccttctgcttgataaaactgacattacgatctgtgcgaacgtggggtttgtaggtccgaactatttatttaatctgccttactccgtaaattcccacgcctttcgaaggctcaaaccttacaaggccccaaggaaccttgcgtttcacacaaaatcagctttcttgctaactttctcgtctcagcatccggtaaataatgcgtaaagaaatttttgccccacatcctgtcaaagagaattctgttcctcgcttgcatgattgtatctgtggtgtgagttcacctgctggctgaaagttctcgcatatgaagctatataaacctcactacggttcatactctcgccttattttcctcgctaaatcgtacatattgtaaggtatctgctttttaaaagaataaatcgagttgtctgtatattataatacaaatttatattttcagaaaagtgagcgttaattggtcatcaaaaacctatatctatttattcttttttcatctaaccgttctagatatagacttagtcaaaaaaagagacttcctatgaactgttctgcagtatggtaaaaagcgatgcgcgggatcccgctct
gi|10 : cactggacatccttctttaataaaataatgctattgttaattaaatgattagaatttacacagttattatttattttttcatattgtgggaaatcaatatattcaattgtatatgtaatatacaatttgaaacaatttaaaacatgtataaatatacatgtattagtaatattgtaaagatttctgaaaacgattttgccaagaaaatataacactgcactaacaagtaaatcgttaacattctccctatacttttattctgtttctaaaatatgccacttactgaattcttctaaaaacttcatgtgattttcgggtattttctggtatgcgaacggacattgaaagcatgtccatacattgaataaaaaattaatggttcaacacaattagcgatagaaaaaatttgatgtttcaataaaaacatcacacaaggagctccacgggggtgaaggcggggtggattcagcaccctgacgtattctttttacttgtgctttattagctT-AG-CG-TT-TGTTAAGCCAAC-TAGCACCTCT--TGA-TTTAGT----AT--TTT-TAT------AC-----GATGCA-TG--TG---CAGTC---ATTAGA--CT--A-CTCAACAAAAG-CT--CC--ATGAA-TTGT----CA-----ATAT---TATGTAAAAAG---TGC-CGGGA-CCCGCTC
gi|11 : aatattgcatcatcctaaatgaatatttcattttctacattTCTG-GGTGTGACGTCAC--GTTG-TTGAAG--TCCCG-TATGTAAGA-----TGAAAT--C-T------CG---C--ATACGTTCGTTT-ATTTCC---G-TAAA--ATGCAGTAGCTGTAAGGTA----CGTTTGA-TG-AAA-A-TAAA-TCG
gi|12 : AGT-AG-CGGTAATATTT-GGCATC-AAACACCTAT--TTATTTTAGT----TTC-TTTATTT------TT-----GGATCG-TGGTCG---AAG--T--AA-AGA--CTTAA-ATCAAAAAAAG-CT---T--ATGAA-CTGT----CA-----GTAT---
gi|13 : A-TCTAAT----TTT-TTG-TAT------ACAATGGG---TG-TG--CA---A---TT--ACTAGT--TTCAC-TCAACAAAAAG-CC--CC--TTTAA-CTGC----CAATGTTGTAT---TA-AAAAAAAG---TGT-CTTGA-CCCGCTCT
gi|14 : T----TTCGTTT-TTT------AT-----A---CGATG--CGTTTAAAATT--ATTCGA--TTTA--CTTTAAAAAAG-CT--CC--ATGAA-CTAT----CA-----ATAT---TG-GTTAAAAG---TCC-TGGGC-CCgt
gi|15 : gtaAATATTAAACCCTG---TCAC-A-G------T-TTCACA-TT-----CCTAGCTTTCTC---TTCC-TAAA--AATTGACACTT-CAGAAGTT-TC-
gi|16 : -GTAAAAAG---TGC-CGGGA-CCCGCTCT
gi|2 : ACAGCCTTCTTGT-GATAATATAAATG-TATTGTAAAAT-AACATATTAATGGGAAAGCCTTTTAAGTGA-TTAGAAT-TTACAC-------ATT-T-TTT--TTTCA--TAAAGGGCCTGGACCTTTATGATTG-AA--A-ATATAAGAAACATATCTATCATATTGGGGAA-AGGCAATATATAATCTT-----CGACT----GATATGTA-AA------ATGCATT--A----TATTGT------TGCTG-AAATGATTT-G-CAGGACAATATTAA-CAATG---TCAC-A-GG----TC-TGAACA-TT-----TGTAACTTTATG---T--C-TAAA--A--TGACACTT-CTGAATAC-TC-T--AAACTT-TCATGTGA-TT----GGTATTTTCA-TT---A------TGTGACAAATGCA-TAT-TG-AA-GCATGT-CATACACAATAAATTAATGATTTAA--G-TTTAACAAA---AACA-ACAACACAATGG--GGAAACAT--TGA-G-TTCAA-TGAAAACA--A---CACAAGGAA----A------AGGGGG----AAGGGGGT--AT--AG-ACCT--ACG-------TCTTCTT-GTGATTTATTAG-T-GATCACATGCAAAT-TGTGT--A------TA-TACACGCGTGTAGT--C----TTAG-AAATAACAAGCAAAT-TGTGTA------TAT-ACACGCGTGTAAT--CAATTT-AGAA-GGAAAAA---G-A---T-A--T-GTAAAGCATTTA-CGTCTTC-GG-AAAA--A--CAAA-CC--A-C-GAT------A-----TT----C-CCC----------AACCTTTCTG--TG-A-----CTG-------------T--G----AA---CGTTGGTTT-GTAGG--CCGA-TTATC-G-CTT---T------TACTC-GC--AA-TTCCCT--C-GGCCTTTCGA-GGC-TCAAACCT-ATAAGACAC----GATACCTA--TGCGTTCA-CA-AAA--ATC-GCTTTCA--TTG-TAACTTTCTC-T-CTCAGCGATC-GGTAA----TG----GTAAAGAA-TTTT----TACCATCAC---A-GTCAAA-AAAATC--GTTC---GCTGTCATGAT--TGTA-TTCTG-GGTGTGACGTCAC--GATG-CTGAAG--TATAG-CA--TAGGA-----TATAAA--C-T------CG---C--ATACGTTCGGCT-ATTTCC---G-TAAA--GTACA-TCATTGTAAGGTA----TGTTTTA-GA-AGA-A-TAAA-TCGAGTT-----TA-TATTCATAAGACAA--TTAT--T-TTTC---AGAAAAGT-AG-CG-TA-TATTG-GCCATC-AAACACTTAT--TTA-TTAAGTGGGGTTT-TTT-TTT------AC-----G---CG-TG--GG---AAGTTTTGAA-AGA--TTAAA-AAAAAAAAAAG-CT--TC--ATGAC-CTGG----CA-----GTAT---TG-GTAAAAAG---TGC-CGGGA-CCCGCTCTttaa
gi|3 : ttTAACTGA-TTAGAATGTTACAC-------ATT-T-ATTCATTTCAAATA--------------TCGTGG--G-AATAATATATAAACAATATTC--A----AT----GGATATGTAAAATACACT--T-----C-A-T-----AC-TGTA-TA------GTA-ATTTTAG---ACTTG--------GCTG-AAACGATTTTGGCAAGAAAATATTACACACTG---TCAC-AAGG----TC-TTTACA-TT-----TGTAACCTTTTC---TTTCCTAAA--A--TGACACTT-CTGAATTC-TCGT--AAACGTGTCATGTGAATT----GGTATTTCTT-TTCTTA------TGCGACGAATGGA-CATCTG-AAAGCAT-C-CA-ACAT---GAA--GATAATTAAA--G-T-----------------CAACACAG-GG--AAAAAAATCTTGA-G-TTCAAATAAAAACA--A---CACAA-GAG----A------GTGGGG----GGGGGGGTA-AT--AG-ACCT--ACG---------TACTT-GT-ATTTATTA--T-AATAACAAGCAAATCTGTGT--A------TATTCCGCGCGTGTATA--CAATTTTAG-AAGGAAAAAAAAAA
gi|3 : c-TACGTACTTGTATT--TA---TTAT-AA-TAACAAGCAAATCTGTGTA------TATTCCGCGCGTGTATA--CAATTTTAGAA-GGAAAAA---A-AAAAG-A--T-GTAAAGCATT-A-CTCTTTT-GGCAAAATCA--TAAA-CC--A-C-GAT------A-----TTATTCCACCC----------CACCTT-CTG--TG-A-----CTGA--CATTACGATCTACG----GAGACCGTTGGGTT-GTAAGGCCCGAATCATC-G-CTT---T------TACTCCGT--AA-TTCCCC--CAGGC--TTCGA-GGC-TCAAACCT-ATAAG-CCC----GA-ACCTA--TGCGTTCAACA-AAA--AT--GCGTTCAAATTG-TAACTT-CTC-TTCTCAGCGATCCGGTAA----TG-----TAAAAAA-TTTT----TGCCAC-AC---CTGTCAAA-AGAATC--GTTC---GCTGTCATGATATTGTACTTCTG-GGTGTGACTCCA---GCTG-T--AAG--TCTCG-CAA-TAG--------ATAAA--C-T------CT---CCAATACGTTCGGCT-ATT-CC---G-TAAA---TG-A-TAGTTGTAAGGTA----TGTCTTATAA-AGA-AATAAA-TCGAGTT-----AAATATT-ATATTACAAATTTAT--T-TTTTTCTAGAAAAGT-AGGCG-TT-TATTG-GCCATCTAAACACCTAT--TTA-TTTAGT----TTT-TAT-TTG------AT-----G---CG-TG--TG---AAGTTA--TACAGA--CTTAA-TCAAACAAAAG-CT--TCAAATGCA-CTGT----CA-----GTATCTGTA-GTAAAAAG---TGC-CGGGA-CCCGCTgatgtaaagcattactcttttggcaaaatcataaaccacgatattattccaccccaccttctgtgactgacattacgatctacggagaccgttgggttgtaaggcccgaatcatcgcttttactccgtaattcccccaggcttcgaggctcaaacctataagcccgaacctatgcgttcaacaaaaatgcgttcaaattgtaacttctcttctcagcgatccggtaatgtaaaaaatttttgccacacctgtcaaaagaatcgttcgctgtcatgatattgtacttctgggtgtgactccagctgtaagtctcgcaatagataaactctccaatacgttcggctattccgtaaatgatagttgtaaggtatgtcttataaagaaataaatcgagttaaatattatattacaaatttatttttttctagaaaagtaggcgtttattggccatctaaacacctatttatttagtttttatttgatgcgtgtgaagttatacagacttaatcaaacaaaagcttcaaatgcactgtcagtatctgtagtaaaaagtgccgggacccgct
gi|4 : ctaactgattagaatgttacacatttattcatttcaaatatcgtgggaataatatataaacaatattcaatggatatgtaaaatacacttcatactgtatagtaattttagacttggctgaaacgattttggcaagaaaatattacacactgtcacaaggtctttacatttgtaaccttttctttcctaaaatgacacttctgaattctcgtaaacgtgtcatgtgaattggtatttcttttcttatgcgacgaatggacatctgaaagcatccaacatgaagataattaaagtcaacacagggaaaaaaatcttgagttcaaataaaaacaacacaagagagtgggggggggggtaatagaccACATCCTTCTTTTTAATAAAATAAATG-TATTGTAAA-TTA-CGTATTAATGGAAAAGCTTTTTAAAAGAATTAGAAT-TTACAC-------GTTAT-TTTA-TTTCAA-TA--------------TTGTGG--G-AATCA-ATATAATTAATATTCCAAT----------GATATGTAAAATACAGT--T-------A-T-----ACATGTA-------------ATT--AG---TA---TAA----TTTTA-GA-----TTTG-CAGGAAAATATTAACAACTG---TCACAA-GG----TC-TTTACATTT-----TGTAACTTTATC---TTTC--AAA--A--TGACACTT-CTGAATTC-TC-T--AAACTT-TCATGTGA-TT----GGTATTTTCT-TT---A------TGCGATAAATGTAGCAT-TG-AA-GCATGC-CATACATGATAAA--------TTAA--G-TT----------------CAACACAATGGAAAAAAAAAT--TGA-G-TTCAA-TAAAAACA--ATACCACAAGGAG----AATGGGGAGGGGG----GGGGGGGT--AT--AG-ACCT--ACGT------TCTACTTGGTGATGTATTAG-TAAATAACAAGCAAA--TATGT--AT-----TA-TACATGCGTGTAGA--CAA-TTTAG-AAGGGAAAAAAAGAT-TGT
gi|4 : ctgTTAGTAAATAACAAGCAAATATGTAT-------TAT-ACATGCGTGTAGA--CAATTT-AGAA-GGGAAAA---A-AA--G-A--TTGTAAAGCATTTA-CGTCTTTTGG-AAAA--A--CAAAACC--ATC-GAT------AATTATTC----C-CCC----------CACCTT-CTG--TGGA-----CTGA--CATTACGATCT--GTG--GA---CGTTGGGTT--TAGG--CCCGATTATC-GGCTTAAAT------TACTC-GC--AA-TTCCCCTTC-GGCCTTTCGA-GGCCTCAAACCT-ATAAGGCCC----GATACCTA--TGCGTTTAACG-AAACCGTT-GCTTTCAT-TTG-TAACTTTCTaaagcatttacgtcttttggaaaaacaaaaccatcgataattattccccccaccttctgtggactgacattacgatctgtggacgttgggtttaggcccgattatcggcttaaattactcgcaattccccttcggcctttcgaggcctcaaacctataaggcccgatacctatgcgtttaacgaaaccgttgctttcatttgtaactttcttc
gi|5 : ctgacatccttctttttaataaaataaatgtattgtaaattacgtattaatggaaaagctttttaaaagaattagaatttacacgttattttatttcaatattgtgggaatcaatataattaatattccaatgatatgtaaaatacagttatacatgtaattagtataattttagatttgcaggaaaatattaacaactgtcacaaggtctttacattttgtaactttatctttcaaaatgacacttctgaattctctaaactttcatgtgattggtattttctttatgcgataaatgtagcattgaagcatgccatacatgataaattaagttcaacacaatggaaaaaaaaattgagttcaataaaaacaataccacaaggagaatggggaggggggggggggtatagacctacgttctacttggtgatgtaCTACTT-CTGATTTATTCG-T--ATAGCAAGCAAAA-TGAGTACA------TA-TACATGCATGTTGT--CAA-ATTAG---ATAAAAATCAAtc
gi|5 : ATAGCAAGCAAAA-TGAGTACA----TAT-ACATGCATGTTGT--CAAATT-AGA---TAAAAA---TCAA--T-ACAT-TTAAAGTATTTA-CGTCTAT-GG-AAAA--A--TATC-CC--A-C-GAC------A-----TT----C-TCCT---------CTTCTTTCTG--CG-G-----CTGATGCATTGT-ATT---------A---CGTTG-----------------TTATC------AA-T------T---CCACTAAG-TTTCCC--C-TGACTTT-GG-GGT-TCAAACCT-GTAAGGTCG----GATATTTAAATGCATTCA-CA-AAA--TTC-ACTTTCA--TTA-TA-CTTT-TC-T-CTCCGTAATC-AGTAA----TG----GTCAAAAA-CCTTGTTGTGTCAC-------TGTCAAA-AGAACG--GTCC---ACAGTTGTGCT--TGTG-TTCTA-GGTGTGTCGCAAT--ACTG-TTAAAG--TCTCG-CATGTGGGA-----TG-AAA--TAT------CG---C--ACATGTTTGACC-ATTTCC---A-TAAA--ATATA-AAGTTATACGGTA----CG---AA-GAGAAA-A-AAAA-TC----C-----TA--ACTC--AAG-CATTTTTTT--T-TTTC---AAAAATGT-Atacatttaaagtatttacgtctatggaaaaatatcccacgacattctcctcttctttctgcggctgatgcattgtattacgttgttatcaattccactaagtttcccctgactttggggttcaaacctgtaaggtcggatatttaaatgcattcacaaaattcactttcattatacttttctctccgtaatcagtaatggtcaaaaaccttgttgtgtcactgtcaaaagaacggtccacagttgtgcttgtgttctaggtgtgtcgcaatactgttaaagtctcgcatgtgggatgaaatatcgcacatgtttgaccatttccataaaatataaagttatacggtacgaagagaaaaaaaatcctaactcaagcatttttttttttcaaaaatgtacattactaacaaagatacactta
gi|6 : ctacttctgatttattcgt-TTTACA-TT-----TGTAACTTTATC---TTTC-TAAA--A--TAACACTT-TTGAATTC-TC-T--AAACTT-TCATGTGA-TT----GTTATTTTTT-TT---AAGTTTATGTGACAAATGTA-CAT-TG-AA-ACATGT-CATACAT---GAAT-AAT--TTTAG--T-TT-AACAAA---AACA-ACTACACAATGG--AAAAAAAAA-TGA-T-TTCAA-TAAAAGCA--A---CACAAGGTG----A-----------------GGGGGGT--AT--AG-ACCT--ATG-------TCTAATT-GTGGTTTATTAG-T-AATAACAAGCACAT-TATGT--A------TA-TACACGCATGTAGT--CAA-TTTAG-AAcattactaacaaagatacactta
gi|6 : TGTGGT--TTA-TT-AG-TAATAACAAGCACAT-TATGTA------TAT-ACACGCATGTAGT--CAATTT-AGAA-GGGGGAA------A--T-A--T-GTAATGCATTTA-CGTCTTT-GA-AAAA--A--CAAA-CC--A-T-GAT------A-----TT----CTCCC----------CACCTTTCTA--TA-A-----CTGA--CATTACGATCT--GTT--GA---CGTTGGGTT-GTAgggggaaatatgtaatgcatttacgtctttgaaaaaacaaaccatgatattctccccacctttctataactgacattacgatctgttgacgttgggttgta
gi|7 : tttacatttgtaactttatctttctaaaataacacttttgaattctctaaactttcatgtgattgttattttttttaagtttatgtgacaaatgtacattgaaacatgtcatacatgaataattttagtttaacaaaaacaactacacaatggaaaaaaaaatgatttcaataaaagcaacacaaggtgaggggggtatagacctatgtctaatACTTTTTC-T-CTCAGCGATC-GGTAA----TGCATGGTAAAGAA-TTTT----TATCACCA----------------------TTC---GCTGTCATGAT--TATG-TTCTG-AGTGTGACGTCAC--ACTT-TTAAAG--TCTCGATA--TAGGA-----TATAAACTC-T------CG---C--ATACGTTCGGCT-ATTTCC---G-TAAA--GTACA-TACTAGTA----------GTTGT-------A-A-TAAA-TCGAGTT-----TA-TATTCATAAGACAAATCTATTAT-CTTC---AGAAAGGT-AA-CG-TA-TATTG-GC
gi|8 : TTCC---G-CAGA--ACA-A-GAGTTGTAAGGTA----TGTTTTA-GA-AGAGA-TAAAATCGAGTT------A-TCTTCATAGGACACATT-AT--TATTTC---AGAAAAG--AG-CG-TA-TATTT-GCCATC-AA-CACCTAT--TT--TTCGAT----T---------------------------CG-TG---G---AAGT----AATAGAACTTTAT-TAAAAAAAAAG-CT--TCG-ATGAAACTGT----CA-----GTAT---GG-TTTTAAAC---TG--CGGGA-CCC
gi|9 : tcggctcgttcccgtaaatcca----TACTC-ACACAATTT-G-TAGGAAAATATTAAATACTG---TAAC-A-GT----TC---AGCA-TT-----TGTAACTTTATC---TTTA-TGAA------------T-C--AATT------------TG-TCA---GA-TA----GGTATTTTCT-TT---AAG----AGTGACAAATGCA------------CATGT-CATA---AATGAA--A--AATTGAA--T-TG-AACAAA---AGCA-ACCAa
gi|9 : ttatcattTTTAA--GAGT-GACAAATGCA-CATGTCATA-AATG-----AAAAAT--TGA-A-TTGAA-CAAAAGCA--A---C-CAAGGAG------------GGGGG----AGGGGGGT--aggaggggggaggggggtcacattcagttg
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 1 4444444444 1 1 3333333 111 22 111 55555555555555 11 1 1 111 5555555555 000000000000000000000000000000000000000000000000000000000000 111 111 2222222 11111 111 11111 1111 22222222 111111 111 4444444444444444444444444444444444 11 111 111111 444444444444 1111 11 11 11 33333333 11 222222222 1 222222 111 33333333333333333 333333333333333333333333333333333 1 1111111 33333333333 11 4444444444444444 1 11 11 1111 1 111 1 111111 111 1111 3333 1111 33333333 111 111 11 111 22 11111 22222222222 111 111 111 11111 222222 11 111 11111111 4444444444444444444444444444444444444444 11111 111111 1111 11111
lowQualScore : 00 7 3 5555555555 888 3 0 0 0 2222222 111 33 666 88888888888888 33 0 55 0 222 0 66 7777777777 1 0 666666666666666666666666666666666666666666666666666666666666 1 8 0 666 3 111 2222222 5 1 44444 5 000 5 33333 5 1 5 9999 3 6 6 4444 11111111 111111 1 77 6 6 6 6 888 6666666666666666666666666666666666 1 1 55 99 000 6 111111 222222222222 4444 55 11 8 11 99999999 6 6 88 00 666666666 5 1 777 5555 4 1 1 888888 6 000 6 6 55555555555555555 6 6 6 99999 6 99 6 6 777777777777777777777777777777777 5 99 6666666 99 2 11111111111 99 99 5 2222222222222222 0 0 11 8 11 8 8 8 8 3 7777 0 111 0 8 222222 999 8 1 8 8 8 7777 4444 8 7777 0 55555555 8 444 444 11 8 6 000 6 99 6 55 66666 3 11111111111 111 99 1 6 000 5 111 6 5 3 1 22222 9999 5 5 5 000000 6 6 3 55 6 111 5 5 5 66 5 6 1 99 5 1 22222222 5 0 7777777777777777777777777777777777777777 66 2 33333 5 555555 5 0000 22222 888 5 888 5 5
lowQualScore : .. . . .......... ... . . . . ....... ... .. ... .............. .. . .. . ... . .. .......... . . ............................................................ . . . ... . ... ....... . . ..... . ... . ..... . . . .... . . . .... ........ ...... . .. . . . . ... .................................. . . .. .. ... . ...... ............ .... .. .. . .. ........ . . .. .. ......... . . ... .... . . . ...... . ... . . ................. . . . ..... . .. . . ................................. . .. ....... .. . ........... .. .. . ................ . . .. . .. . . . . . .... . ... . . ...... ... . . . . . .... .... . .... . ........ . ... ... .. . . ... . .. . .. ..... . ........... ... .. . . ... . ... . . . . ..... .... . . . ...... . . . .. . ... . . . .. . . . .. . . ........ . . ........................................ .. . ..... . ...... . .... ..... ... . ... . .
lowQualScore : 77 3 3 3333333333 777 7 8 0 0 5555555 000 88 555 88888888888888 88 0 88 0 222 8 00 8888888888 0 8 000000000000000000000000000000000000000000000000000000000000 0 0 8 666 2 777 7777777 7 0 33333 7 000 7 77777 7 7 7 9999 2 7 7 2222 22222222 888888 0 77 7 7 7 7 555 3333333333333333333333333333333333 0 0 88 22 222 7 888888 222222222222 2222 88 00 0 00 22222222 7 7 33 22 000000000 7 4 444 8888 4 0 4 333333 7 222 7 7 55555555555555555 7 7 7 33333 7 22 7 7 333333333333333333333333333333333 5 22 8888888 22 5 22222222222 22 00 6 2222222222222222 8 0 00 0 00 0 0 0 0 2 0000 6 888 6 0 444444 888 0 0 0 0 0 0000 0000 0 0000 8 44444444 0 222 000 00 0 7 222 7 22 7 00 77777 5 22222222222 777 22 0 7 000 7 999 6 7 0 4 66666 7777 7 7 7 222222 7 7 5 88 7 777 0 7 7 77 7 7 7 22 7 7 44444444 0 5 1111111111111111111111111111111111111111 99 2 88888 0 000000 0 6666 55555 888 0 888 0 0
consensus : NNACATCCTTCTTTT-AATAAAATAAATG-TATTGTAAA-T-A-CGTATTAATGGGAAAGCCTTTTAAATGA-TTAGAAT-TTACAC-------ATT-T-TTT--TTTCAA-TA--------------TTGTGG--G-AATCA-ATATAANNAATATTCCAATCGTAT---GGATATGTAANATACAAT--T-----CGA-T----GACATGTA-AA------ATGCATT--AG---TATTGTAA----TNCTG-AAACGATTTTG-CAGGAAAATATTAAACACTG---TCACA-GG----TC-TTNACATT-----T-GTAACTTTATC---TTTC-TAAA--A--TGACACTT-CTGAATTC-TC-T--AAACTT-TCATGTGA-TT----GGTATTTTC------T-TT---A--TGCGACAAATGNA-CAT-TG-AA-GCATGT-CATACATAATGAAT-AATAATTTAA--G-TT-AAC-AAA---A-CA-ACNACACAATGG--AAAAAAAT--TGA-G-TTCAA-TAAAAACA--A---CACAAGGAG----A------AGGGGG----GGGGGGGT--AT--AG-ACCT--ACG------TTCTACTT-GTGATTTATTAG-T-AATAACAAGCAAAT-TGTGT--A------TA-TACGCGCGTGTAGT--CAA-TTTAG-AAATAANAAGCAAAT-TGTGTA------TAT-ACACGCGTGTAGN--CAATTT-AGAA-GGAAAAA---G-AA--T-A--T-GTAAAGCATTTA-CGTCTTT-GG-AAAA--A--CAAA-CC--A-C-GAT------A-----TT----C-CCC----------CACCTTTCTG--TG-A-----CTGA--CATTACGATCTG-TG---A----CGTTGGGTT-GTAGG--CCGAATTATC-G-CTTAA-T------TACTCCGC--AA-TTCCCC--C-GGCCTTTCGA-GGC-TCAAACCT-ATAAGGCCC----GATACCTA--TGCGTTCAACA-AAA--ATC-GCTTTCA--TTG-TAACTTTCTC-T-CTCAGCGATC-GGTAA----TGC---GTAAAGAA-TTTT----TGCCACCAC---CTGTCAAA-AGAATC--GTTC---GCTGTCATGAT--TGTA-TTCTG-GGTGTGACGTCAC--GCTG-TTGAAG--TCTCG-CA--TAGGA-----TATAAA--C-T------CG---C--ATACGTTCGGCT-ATTTCC---G-TAAA--GTACA-TAGTTGTAAGGTA----CGTTTTA-GA-AGA-A-TAAA-TCGAGTT-----TA-TATTCATAAGACAAATTTAT--T-TTTC---AGAAAAGT-AG-CG-TN-TATTG-GCCATC-AAACACC--TATTTA-TTTAGT----TTC-TTT-TTT------AC-----G---CG-TG--CG---AAGTTT--AATAGA--CTTAA-CNAAAAAAAAG-CT--CC--ATGAA-CTGT----CA-----GTAT---TG-GTAAAAAG---TGC-CGGGA-CCCGCTCT
Reference ( family-617 ) : NNACATCCTTCTTTT-AATAAAATAAATG-TATTGTAAA-T-A-CGTATTAATGGGAAAGCCTTTTAAATGA-TTAGAAT-TTACAC-------ATT-T-TTT--TTTCAA-TA--------------TTGTGG--G-AATCA-ATATAANNAATATTCCAATCGTAT---GGATATGTAANATACAAT--T-----CGA-T----GACATGTA-AA------ATGCATT--AG---TATTGTAA----TNCTG-AAACGATTTTG-CAGGAAAATATTAAACACTG---TCACA-GG----TC-TTNACATT-----T-GTAACTTTATC---TTTC-TAAA--A--TGACACTT-CTGAATTC-TC-T--AAACTT-TCATGTGA-TT----GGTATTTTC------T-TT---A--TGCGACAAATGNA-CAT-TG-AA-GCATGT-CATACATAATGAAT-AATAATTTAA--G-TT-AAC-AAA---A-CA-ACNACACAATGG--AAAAAAAT--TGA-G-TTCAA-TAAAAACA--A---CACAAGGAG----A------AGGGGG----GGGGGGGT--AT--AG-ACCT--ACG------TTCTACTT-GTGATTTATTAG-T-AATAACAAGCAAAT-TGTGT--A------TA-TACGCGCGTGTAGT--CAA-TTTAG-AAATAANAAGCAAAT-TGTGTA------TAT-ACACGCGTGTAGN--CAATTT-AGAA-GGAAAAA---G-AA--T-A--T-GTAAAGCATTTA-CGTCTTT-GG-AAAA--A--CAAA-CC--A-C-GAT------A-----TT----C-CCC----------CACCTTTCTG--TG-A-----CTGA--CATTACGATCTG-TG---A----CGTTGGGTT-GTAGG--CCGAATTATC-G-CTTAA-T------TACTCCGC--AA-TTCCCC--C-GGCCTTTCGA-GGC-TCAAACCT-ATAAGGCCC----GATACCTA--TGCGTTCAACA-AAA--ATC-GCTTTCA--TTG-TAACTTTCTC-T-CTCAGCGATC-GGTAA----TGC---GTAAAGAA-TTTT----TGCCACCAC---CTGTCAAA-AGAATC--GTTC---GCTGTCATGAT--TGTA-TTCTG-GGTGTGACGTCAC--GCTG-TTGAAG--TCTCG-CA--TAGGA-----TATAAA--C-T------CG---C--ATACGTTCGGCT-ATTTCC---G-TAAA--GTACA-TAGTTGTAAGGTA----CGTTTTA-GA-AGA-A-TAAA-TCGAGTT-----TA-TATTCATAAGACAAATTTAT--T-TTTC---AGAAAAGT-AG-CG-TN-TATTG-GCCATC-AAACACC--TATTTA-TTTAGT----TTC-TTT-TTT------AC-----G---CG-TG--CG---AAGTTT--AATAGA--CTTAA-CNAAAAAAAAG-CT--CC--ATGAA-CTGT----CA-----GTAT---TG-GTAAAAAG---TGC-CGGGA-CCCGCTCT
gi|1 : ACATCCTTCTTT--AATAAAATAA-TGCTATTGT-------------TAAT------------TAAATGA-TTAGAAT-TTACACAGTTATTATT-TATTT--TTTC-A-TA--------------TTGTGG--GAAATCA-ATATA--------TTCAATTGT-------ATATGTAATATACAAT--TTGAAACAA-TTTAAAACATGTATAAATATACATGTATT--AGTAATATTGTAAAGATTTCTGAAAACGATTTTGCCAAGAAAATAT--AACACTGCACTAACA-AGTAAATCGTTAACATTCTCCCT-ATACTTTTATTCTGTTTC-TAAAATA--TGCCACTTACTGAATTCTTC-TAAAAAC-T-TCATGTGA-TTTTCGGGTATTTTC------TGGT---A--TGCG---AACGGA-CAT-TGAAA-GCATGTCCATACAT--TGAAT-AAAAAATTAATGG-TT---C-AAC---A-CA-ATTA-GCGATAG--AAAAAATT--TGATGTTTCAA-TAAAAACATCA---CACAAGGAGCTCCA------CGGGGGTGAAGGCGGGGTGGATTCAGCACCCTGACGTATTCTTTTTACTT-GTGCTTTATTAGCT-AATAAAAAGCAAAT-TGTGT--AATACATTG-TACACGCGTGTAGGAACAA-TTTAG-AAAGGAAAAACGA
gi|1 : cactggAATAAAAAGCAAAT-TGTGTAATACATTGT-ACACGCGTGTAGGAACAATTT-AGAAAGGAAAAACGAG-AA--TTA--T--TAGAGAATTTAACGTCTTT-GG-AAAA--AAACAAA-CCTAA-CTGATCAATTAA-----TT----C-CCCATATATGCGCCACCTT-CTGCTTG-ATAAAACTGA--CATTACGATCTG-TGCGAA----CGTGGGGTTTGTAGGT-CCGAACTATTTA-TTTAA-TCTGCCTTACTCCGT--AAATTCCCA--C-G-CCTTTCGAAGGC-TCAAACCTTACAAGGCCCCAAGGA-ACCT---TGCGTTTCACACAAA--ATCAGCTTTC---TTGCTAACTTTCTCGT-CTCAGCATCC-GGTAAATAATGC---GTAAAGAAATTTT----TGCC-CCACATCCTGTCAAAGAGAATTCTGTTCCTCGCTTGCATGAT--TGTA-T-CTGTGGTGTGAGTTCACCTGCTGGCTGAAAGTTCTCG-CA--TATGAAGCTATATAAA--C-CTCACTACGGTTC--ATACTCTCGCCTTATTTTCCTCGCTAAATCGTACA-TA-TTGTAAGGTATCTGCTTTTTA-AA-AGA-A-TAAA-TCGAGTTGTCTGTA-TATT-ATAATACAAATTTATA-T-TTTC---AGAAAAGTGAG-CG-TT-AATTG-GTCATC-AAAAACCTATATCTA-TTTA------TTC-TTT-TTTCATCTAAC---------CG-TT--CT---AGAT-----ATAGA--CTTAGTCAAAAAAAGAGACTTCCT--ATGAA-CTGTTCTGCA-----GTA----TG-GTAAAAAGCGATGCGCGGGATCCCGCTCTgaattattagagaatttaacgtctttggaaaaaaacaaacctaactgatcaattaattccccatatatgcgccaccttctgcttgataaaactgacattacgatctgtgcgaacgtggggtttgtaggtccgaactatttatttaatctgccttactccgtaaattcccacgcctttcgaaggctcaaaccttacaaggccccaaggaaccttgcgtttcacacaaaatcagctttcttgctaactttctcgtctcagcatccggtaaataatgcgtaaagaaatttttgccccacatcctgtcaaagagaattctgttcctcgcttgcatgattgtatctgtggtgtgagttcacctgctggctgaaagttctcgcatatgaagctatataaacctcactacggttcatactctcgccttattttcctcgctaaatcgtacatattgtaaggtatctgctttttaaaagaataaatcgagttgtctgtatattataatacaaatttatattttcagaaaagtgagcgttaattggtcatcaaaaacctatatctatttattcttttttcatctaaccgttctagatatagacttagtcaaaaaaagagacttcctatgaactgttctgcagtatggtaaaaagcgatgcgcgggatcccgctct
gi|10 : cactggacatccttctttaataaaataatgctattgttaattaaatgattagaatttacacagttattatttattttttcatattgtgggaaatcaatatattcaattgtatatgtaatatacaatttgaaacaatttaaaacatgtataaatatacatgtattagtaatattgtaaagatttctgaaaacgattttgccaagaaaatataacactgcactaacaagtaaatcgttaacattctccctatacttttattctgtttctaaaatatgccacttactgaattcttctaaaaacttcatgtgattttcgggtattttctggtatgcgaacggacattgaaagcatgtccatacattgaataaaaaattaatggttcaacacaattagcgatagaaaaaatttgatgtttcaataaaaacatcacacaaggagctccacgggggtgaaggcggggtggattcagcaccctgacgtattctttttacttgtgctttattagctT-AG-CG-TT-TGTTAAGCCAAC-TAGCACC--TCTTGA-TTTAGT----AT--TTT-TAT------AC-----GATGCA-TG--TG---CAGTC---ATTAGA--CT--A-CTCAACAAAAG-CT--CC--ATGAA-TTGT----CA-----ATAT---TATGTAAAAAG---TGC-CGGGA-CCCGCTC
gi|11 : aatattgcatcatcctaaatgaatatttcattttctacattTCTG-GGTGTGACGTCAC--GTTG-TTGAAG--TCCCG-TATGTAAGA-----TGAAAT--C-T------CG---C--ATACGTTCGTTT-ATTTCC---G-TAAA--ATGCAGTAGCTGTAAGGTA----CGTTTGA-TG-AAA-A-TAAA-TCG
gi|12 : AGT-AG-CGGTAATATTT-GGCATC-AAACACC--TATTTATTTTAGT----TTC-TTTATTT------TT-----GGATCG-TGGTCG---AAG--T--AA-AGA--CTTAA-ATCAAAAAAAG-CT---T--ATGAA-CTGT----CA-----GTAT---
gi|13 : A-TCTAAT----TTT-TTG-TAT------ACAATGGG---TG-TG--CA---A---TT--ACTAGT--TTCAC-TCAACAAAAAG-CC--CC--TTTAA-CTGC----CAATGTTGTAT---TA-AAAAAAAG---TGT-CTTGA-CCCGCTCT
gi|14 : T----TTCGTTT-TTT------AT-----A---CGATG--CGTTTAAAATT--ATTCGA--TTTA--CTTTAAAAAAG-CT--CC--ATGAA-CTAT----CA-----ATAT---TG-GTTAAAAG---TCC-TGGGC-CCgt
gi|15 : gtaAATATTAAACCCTG---TCACA-G------T-TTCACATT-----C-CTAGCTTTCTC---TTCC-TAAA--AATTGACACTT-CAGAAGTT-TC-
gi|16 : -GTAAAAAG---TGC-CGGGA-CCCGCTCT
gi|2 : ACAGCCTTCTTGT-GATAATATAAATG-TATTGTAAAAT-AACATATTAATGGGAAAGCCTTTTAAGTGA-TTAGAAT-TTACAC-------ATT-T-TTT--TTTCA--TAAAGGGCCTGGACCTTTATGATTG-AA--A-ATATAAGAAACATATCTATCATATTGGGGAAAGGCAATATATAATCTT-----CGACT----GATATGTA-AA------ATGCATT--A----TATTGT------TGCTG-AAATGATTT-G-CAGGACAATATTAA-CAATG---TCACA-GG----TC-TGAACATT-----T-GTAACTTTATG---T--C-TAAA--A--TGACACTT-CTGAATAC-TC-T--AAACTT-TCATGTGA-TT----GGTATTTTC------A-TT---A--TGTGACAAATGCA-TAT-TG-AA-GCATGT-CATACACAATAAATTAATGATTTAA--G-TTTAAC-AAA---AACA-ACAACACAATGG--GGAAACAT--TGA-G-TTCAA-TGAAAACA--A---CACAAGGAA----A------AGGGGG----AAGGGGGT--AT--AG-ACCT--ACG------T-CTTCTT-GTGATTTATTAG-T-GATCACATGCAAAT-TGTGT--A------TA-TACACGCGTGTAGT--C----TTAG-AAATAACAAGCAAAT-TGTGTA------TAT-ACACGCGTGTAAT--CAATTT-AGAA-GGAAAAA---G-A---T-A--T-GTAAAGCATTTA-CGTCTTC-GG-AAAA--A--CAAA-CC--A-C-GAT------A-----TT----C-CCC----------AACCTTTCTG--TG-A-----CTG-------------TG--A---A----CGTTGGTTT-GTAGG--CCGA-TTATC-G-CTT---T------TACTC-GC--AA-TTCCCT--C-GGCCTTTCGA-GGC-TCAAACCT-ATAAGACAC----GATACCTA--TGCGTTCA-CA-AAA--ATC-GCTTTCA--TTG-TAACTTTCTC-T-CTCAGCGATC-GGTAA----TG----GTAAAGAA-TTTT----TACCATCAC---A-GTCAAA-AAAATC--GTTC---GCTGTCATGAT--TGTA-TTCTG-GGTGTGACGTCAC--GATG-CTGAAG--TATAG-CA--TAGGA-----TATAAA--C-T------CG---C--ATACGTTCGGCT-ATTTCC---G-TAAA--GTACA-TCATTGTAAGGTA----TGTTTTA-GA-AGA-A-TAAA-TCGAGTT-----TA-TATTCATAAGACAA--TTAT--T-TTTC---AGAAAAGT-AG-CG-TA-TATTG-GCCATC-AAACACT--TATTTA-TTAAGTGGGGTTT-TTT-TTT------AC-----G---CG-TG--GG---AAGTTTTGAA-AGA--TTAAA-AAAAAAAAAAG-CT--TC--ATGAC-CTGG----CA-----GTAT---TG-GTAAAAAG---TGC-CGGGA-CCCGCTCTttaa
gi|3 : ttTAACTGA-TTAGAATGTTACAC-------ATT-T-ATTCATTTCAAATA--------------TCGTGG--G-AATAATATATAAACAATATTC--A----AT---GGATATGTAAAATACACT--T-----C-A-T-----AC-TGTA-TA------GTA-ATTTTAG---ACTTG--------GCTG-AAACGATTTTGGCAAGAAAATATTACACACTG---TCACAAGG----TC-TTTACATT-----T-GTAACCTTTTC---TTTCCTAAA--A--TGACACTT-CTGAATTC-TCGT--AAACGTGTCATGTGAATT----GGTATTTCT------T-TTCTTA--TGCGACGAATGGA-CATCTG-AAAGCAT-C-CA-ACAT---GAA--GATAATTAAA--G-T------------------CAACACAG-GG--AAAAAAATCTTGA-G-TTCAAATAAAAACA--A---CACAA-GAG----A------GTGGGG----GGGGGGGTA-AT--AG-ACCT--ACG---------TACTT-GT-ATTTATTA--T-AATAACAAGCAAATCTGTGT--A------TATTCCGCGCGTGTATA--CAATTTTAG-AAGGAAAAAAAAAA
gi|3 : c-TACGTACTTGTATT--TA---TTAT-AA-TAACAAGCAAATCTGTGTA------TATTCCGCGCGTGTATA--CAATTTTAGAA-GGAAAAA---A-AAAAG-A--T-GTAAAGCATT-A-CTCTTTT-GGCAAAATCA--TAAA-CC--A-C-GAT------A-----TTATTCCACCC----------CACCTT-CTG--TG-A-----CTGA--CATTACGATCTA-CG---GAGACCGTTGGGTT-GTAAGGCCCGAATCATC-G-CTT---T------TACTCCGT--AA-TTCCCC--CAGGC--TTCGA-GGC-TCAAACCT-ATAAG-CCC----GA-ACCTA--TGCGTTCAACA-AAA--AT--GCGTTCAAATTG-TAACTT-CTC-TTCTCAGCGATCCGGTAA----TG-----TAAAAAA-TTTT----TGCCAC-AC---CTGTCAAA-AGAATC--GTTC---GCTGTCATGATATTGTACTTCTG-GGTGTGACTCCA---GCTG-T--AAG--TCTCG-CAA-TAG--------ATAAA--C-T------CT---CCAATACGTTCGGCT-ATT-CC---G-TAAA---TG-A-TAGTTGTAAGGTA----TGTCTTATAA-AGA-AATAAA-TCGAGTT-----AAATATT-ATATTACAAATTTAT--T-TTTTTCTAGAAAAGT-AGGCG-TT-TATTG-GCCATCTAAACACC--TATTTA-TTTAGT----TTT-TAT-TTG------AT-----G---CG-TG--TG---AAGTTA--TACAGA--CTTAA-TCAAACAAAAG-CT--TCAAATGCA-CTGT----CA-----GTATCTGTA-GTAAAAAG---TGC-CGGGA-CCCGCTgatgtaaagcattactcttttggcaaaatcataaaccacgatattattccaccccaccttctgtgactgacattacgatctacggagaccgttgggttgtaaggcccgaatcatcgcttttactccgtaattcccccaggcttcgaggctcaaacctataagcccgaacctatgcgttcaacaaaaatgcgttcaaattgtaacttctcttctcagcgatccggtaatgtaaaaaatttttgccacacctgtcaaaagaatcgttcgctgtcatgatattgtacttctgggtgtgactccagctgtaagtctcgcaatagataaactctccaatacgttcggctattccgtaaatgatagttgtaaggtatgtcttataaagaaataaatcgagttaaatattatattacaaatttatttttttctagaaaagtaggcgtttattggccatctaaacacctatttatttagtttttatttgatgcgtgtgaagttatacagacttaatcaaacaaaagcttcaaatgcactgtcagtatctgtagtaaaaagtgccgggacccgct
gi|4 : ctaactgattagaatgttacacatttattcatttcaaatatcgtgggaataatatataaacaatattcaatggatatgtaaaatacacttcatactgtatagtaattttagacttggctgaaacgattttggcaagaaaatattacacactgtcacaaggtctttacatttgtaaccttttctttcctaaaatgacacttctgaattctcgtaaacgtgtcatgtgaattggtatttcttttcttatgcgacgaatggacatctgaaagcatccaacatgaagataattaaagtcaacacagggaaaaaaatcttgagttcaaataaaaacaacacaagagagtgggggggggggtaatagaccACATCCTTCTTTTTAATAAAATAAATG-TATTGTAAA-TTA-CGTATTAATGGAAAAGCTTTTTAAAAGAATTAGAAT-TTACAC-------GTTAT-TTTA-TTTCAA-TA--------------TTGTGG--G-AATCA-ATATAATTAATATTCCAAT---------GATATGTAAAATACAGT--T-------A-T-----ACATGTA-A------------TT--AG---TAT---AA----TTTTA-GA-----TTTG-CAGGAAAATATTAACAACTG---TCACAAGG----TC-TTTACATT-----TTGTAACTTTATC---TTTC--AAA--A--TGACACTT-CTGAATTC-TC-T--AAACTT-TCATGTGA-TT----GGTATTTTC------T-TT---A--TGCGATAAATGTAGCAT-TG-AA-GCATGC-CATACATGATAAA--------TTAA--G-TT-----------------CAACACAATGGAAAAAAAAAT--TGA-G-TTCAA-TAAAAACA--ATACCACAAGGAG----AATGGGGAGGGGG----GGGGGGGT--AT--AG-ACCT--ACG------TTCTACTTGGTGATGTATTAG-TAAATAACAAGCAAA--TATGT--AT-----TA-TACATGCGTGTAGA--CAA-TTTAG-AAGGGAAAAAAAGAT-TGT
gi|4 : ctgTTAGTAAATAACAAGCAAATATGTAT-------TAT-ACATGCGTGTAGA--CAATTT-AGAA-GGGAAAA---A-AA--G-A--TTGTAAAGCATTTA-CGTCTTTTGG-AAAA--A--CAAAACC--ATC-GAT------AATTATTC----C-CCC----------CACCTT-CTG--TGGA-----CTGA--CATTACGATCTG-TGG--A----CGTTGGGTT--TAGG--CCCGATTATC-GGCTTAAAT------TACTC-GC--AA-TTCCCCTTC-GGCCTTTCGA-GGCCTCAAACCT-ATAAGGCCC----GATACCTA--TGCGTTTAACG-AAACCGTT-GCTTTCAT-TTG-TAACTTTCTaaagcatttacgtcttttggaaaaacaaaaccatcgataattattccccccaccttctgtggactgacattacgatctgtggacgttgggtttaggcccgattatcggcttaaattactcgcaattccccttcggcctttcgaggcctcaaacctataaggcccgatacctatgcgtttaacgaaaccgttgctttcatttgtaactttcttc
gi|5 : ctgacatccttctttttaataaaataaatgtattgtaaattacgtattaatggaaaagctttttaaaagaattagaatttacacgttattttatttcaatattgtgggaatcaatataattaatattccaatgatatgtaaaatacagttatacatgtaattagtataattttagatttgcaggaaaatattaacaactgtcacaaggtctttacattttgtaactttatctttcaaaatgacacttctgaattctctaaactttcatgtgattggtattttctttatgcgataaatgtagcattgaagcatgccatacatgataaattaagttcaacacaatggaaaaaaaaattgagttcaataaaaacaataccacaaggagaatggggaggggggggggggtatagacctacgttctacttggtgatgtaCTACTT-CTGATTTATTCG-T--ATAGCAAGCAAAA-TGAGTACA------TA-TACATGCATGTTGT--CAA-ATTAG---ATAAAAATCAAtc
gi|5 : ATAGCAAGCAAAA-TGAGTACA----TAT-ACATGCATGTTGT--CAAATT-AGA---TAAAAA---TCAA--T-ACAT-TTAAAGTATTTA-CGTCTAT-GG-AAAA--A--TATC-CC--A-C-GAC------A-----TT----C-TCCT---------CTTCTTTCTG--CG-G-----CTGATGCATTG-----TA-TT---A----CGTTG-----------------TTATC------AA-T------T---CCACTAAG-TTTCCC--C-TGACTTT-GG-GGT-TCAAACCT-GTAAGGTCG----GATATTTAAATGCATTCA-CA-AAA--TTC-ACTTTCA--TTA-TA-CTTT-TC-T-CTCCGTAATC-AGTAA----TG----GTCAAAAA-CCTTGTTGTGTCAC-------TGTCAAA-AGAACG--GTCC---ACAGTTGTGCT--TGTG-TTCTA-GGTGTGTCGCAAT--ACTG-TTAAAG--TCTCG-CATGTGGGA-----TG-AAA--TAT------CG---C--ACATGTTTGACC-ATTTCC---A-TAAA--ATATA-AAGTTATACGGTA----CG---AA-GAGAAA-A-AAAA-TC----C-----TA--ACTC--AAG-CATTTTTTT--T-TTTC---AAAAATGT-Atacatttaaagtatttacgtctatggaaaaatatcccacgacattctcctcttctttctgcggctgatgcattgtattacgttgttatcaattccactaagtttcccctgactttggggttcaaacctgtaaggtcggatatttaaatgcattcacaaaattcactttcattatacttttctctccgtaatcagtaatggtcaaaaaccttgttgtgtcactgtcaaaagaacggtccacagttgtgcttgtgttctaggtgtgtcgcaatactgttaaagtctcgcatgtgggatgaaatatcgcacatgtttgaccatttccataaaatataaagttatacggtacgaagagaaaaaaaatcctaactcaagcatttttttttttcaaaaatgtacattactaacaaagatacactta
gi|6 : ctacttctgatttattcgt-TTTACATT-----T-GTAACTTTATC---TTTC-TAAA--A--TAACACTT-TTGAATTC-TC-T--AAACTT-TCATGTGA-TT----GTTATTTTTTTTAAGT-TT---A--TGTGACAAATGTA-CAT-TG-AA-ACATGT-CATAC---ATGAAT-AAT--TTTAG--T-TT-AACAAAA---A-CA-ACTACACAATGGA-AAAAAAAA--TGA-T-TTCAA-TAAAAGCA--A---CACAAGGTG----A-----------------GGGGGGT--AT--AG-ACCT--ATG-------TCTAATT-GTGGTTTATTAG-T-AATAACAAGCACAT-TATGT--A------TA-TACACGCATGTAGT--CAA-TTTAG-AAcattactaacaaagatacactta
gi|6 : TGTGGT--TTA-TT-AG-TAATAACAAGCACAT-TATGTA------TAT-ACACGCATGTAGT--CAATTT-AGAA-GGGGGAA------A--T-A--T-GTAATGCATTTA-CGTCTTT-GA-AAAA--A--CAAA-CC--A-T-GAT------A-----TT----CTCCC----------CACCTTTCTA--TA-A-----CTGA--CATTACGATCTGTTG---A----CGTTGGGTT-GTAgggggaaatatgtaatgcatttacgtctttgaaaaaacaaaccatgatattctccccacctttctataactgacattacgatctgttgacgttgggttgta
gi|7 : tttacatttgtaactttatctttctaaaataacacttttgaattctctaaactttcatgtgattgttattttttttaagtttatgtgacaaatgtacattgaaacatgtcatacatgaataattttagtttaacaaaaacaactacacaatggaaaaaaaaatgatttcaataaaagcaacacaaggtgaggggggtatagacctatgtctaatACTTTTTC-T-CTCAGCGATC-GGTAA----TGCATGGTAAAGAA-TTTT----TATCACCA----------------------TTC---GCTGTCATGAT--TATG-TTCTG-AGTGTGACGTCAC--ACTT-TTAAAG--TCTCGATA--TAGGA-----TATAAACTC-T------CG---C--ATACGTTCGGCT-ATTTCC---G-TAAA--GTACA-TACTAGTA----------GTTGT-------A-A-TAAA-TCGAGTT-----TA-TATTCATAAGACAAATCTATTAT-CTTC---AGAAAGGT-AA-CG-TA-TATTG-GC
gi|8 : TTCC---G-CAGA--ACA-A-GAGTTGTAAGGTA----TGTTTTA-GA-AGAGA-TAAAATCGAGTT------A-TCTTCATAGGACACATT-AT--TATTTC---AGAAAAG--AG-CG-TA-TATTT-GCCATC-AA-CACC--TATTT--TTCGAT----T---------------------------CG-TG---G---AAGT----AATAGAACTTTAT-TAAAAAAAAAG-CT--TCG-ATGAAACTGT----CA-----GTAT---GG-TTTTAAAC---TG--CGGGA-CCC
gi|9 : tcggctcgttcccgtaaatcca----TACTC-ACACAATTT-G-TAGGAAAATATTAAATACTG---TAACA-GT----TC---AGCATT-----T-GTAACTTTATC---TTTA-TGAA------------T-C--AATT------------TG-TCA---GA-TA----GGTATTTTC------T-TT---AAGAGTGACAAATGCA------------CATGT-CATA---AATGAA--A--AATTGAA--T-TG-AAC-AAA---AGCA-ACCAa
gi|9 : ttatcattTTTAA--GAGT-GAC-AAATGCA-CATGTCATA-AATG-----AAAAAT--TGA-A-TTGAA-CAAAAGCA--A---C-CAAGGAG------------GGGGG----AGGGGGGT--aggaggggggaggggggtcacattcagttg
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 1 4444444444 1 1 3333333 111 22 111 55555555555555 11 1 1 111 5555555555 000000000000000000000000000000000000000000000000000000000000 111 111 2222222 11111 111 11111 1111 22222222 111111 111 4444444444444444444444444444444444 11 111 111111 444444444444 1111 11 11 11 33333333 11 222222222 1 222222 111 33333333333333333 333333333333333333333333333333333 1 1111111 33333333333 11 4444444444444444 1 11 11 1111 1 111 1 111111 111 1111 3333 1111 33333333 111 111 11 111 22 11111 22222222222 111 111 111 11111 222222 11 111 11111111 4444444444444444444444444444444444444444 11111 111111 1111 11111
lowQualScore : 00 7 3 5555555555 888 3 0 0 0 2222222 111 33 666 88888888888888 33 0 55 0 222 0 66 7777777777 1 0 666666666666666666666666666666666666666666666666666666666666 1 8 0 666 3 111 2222222 5 1 44444 5 000 5 33333 5 1 5 9999 3 6 6 4444 11111111 111111 1 77 6 6 6 6 888 6666666666666666666666666666666666 1 1 55 99 000 6 111111 222222222222 4444 55 11 8 11 99999999 6 6 88 00 666666666 5 1 777 5555 4 1 1 888888 6 000 6 6 55555555555555555 6 6 6 99999 6 99 6 6 777777777777777777777777777777777 5 99 6666666 99 2 11111111111 99 99 5 2222222222222222 0 0 11 8 11 8 8 8 8 3 7777 0 111 0 8 222222 999 8 1 8 8 8 7777 4444 8 7777 0 55555555 8 444 444 11 8 6 000 6 99 6 55 66666 3 11111111111 111 99 1 6 000 5 111 6 5 3 1 22222 9999 5 5 5 000000 6 6 3 55 6 111 5 5 5 66 5 6 1 99 5 1 22222222 5 0 7777777777777777777777777777777777777777 66 2 33333 5 555555 5 0000 22222 888 5 888 5 5
lowQualScore : .. . . .......... ... . . . . ....... ... .. ... .............. .. . .. . ... . .. .......... . . ............................................................ . . . ... . ... ....... . . ..... . ... . ..... . . . .... . . . .... ........ ...... . .. . . . . ... .................................. . . .. .. ... . ...... ............ .... .. .. . .. ........ . . .. .. ......... . . ... .... . . . ...... . ... . . ................. . . . ..... . .. . . ................................. . .. ....... .. . ........... .. .. . ................ . . .. . .. . . . . . .... . ... . . ...... ... . . . . . .... .... . .... . ........ . ... ... .. . . ... . .. . .. ..... . ........... ... .. . . ... . ... . . . . ..... .... . . . ...... . . . .. . ... . . . .. . . . .. . . ........ . . ........................................ .. . ..... . ...... . .... ..... ... . ... . .
lowQualScore : 77 3 3 3333333333 777 7 8 0 0 5555555 000 88 555 88888888888888 88 0 88 0 222 8 00 8888888888 0 8 000000000000000000000000000000000000000000000000000000000000 0 0 8 666 2 777 7777777 7 0 33333 7 000 7 77777 7 7 7 9999 2 7 7 2222 22222222 888888 0 77 7 7 7 7 555 3333333333333333333333333333333333 0 0 88 22 222 7 888888 222222222222 2222 88 00 0 00 22222222 7 7 33 22 000000000 7 4 444 8888 4 0 4 333333 7 222 7 7 55555555555555555 7 7 7 33333 7 22 7 7 333333333333333333333333333333333 5 22 8888888 22 5 22222222222 22 00 6 2222222222222222 8 0 00 0 00 0 0 0 0 2 0000 6 888 6 0 444444 888 0 0 0 0 0 0000 0000 0 0000 8 44444444 0 222 000 00 0 7 222 7 22 7 00 77777 5 22222222222 777 22 0 7 000 7 999 6 7 0 4 66666 7777 7 7 7 222222 7 7 5 88 7 777 0 7 7 77 7 7 7 22 7 7 44444444 0 5 1111111111111111111111111111111111111111 99 2 88888 0 000000 0 6666 55555 888 0 888 0 0
consensus : NNACATCCTTCTTTT-AATAAAATAAATG-TATTGTAAA-T-A-CGTATTAATGGGAAAGCCTTTTAAATGA-TTAGAAT-TTACAC-------ATT-T-TTT--TTTCAA-TA--------------TTGTGG--G-AATCA-ATATAANNAATATTCCAATCGTAT---GGATATGTAANATACAAT--T-----CGA-T----GACATGTA-AA------ATGCATT--AG---TATTGTAA----TNCTG-AAACGATTTTG-CAGGAAAATATTAAACACTG---TCACA-GG----TC-TTNACATT-----T-GTAACTTTATC---TTTC-TAAA--A--TGACACTT-CTGAATTC-TC-T--AAACTT-TCATGTGA-TT----GGTATTTTC------T-TT---A--TGCGACAAATGNA-CAT-TG-AA-GCATGT-CATACATAATGAAT-AATAATTTAA--G-TT-AAC-AAA---A-CA-ACNACACAATGG--AAAAAAAT--TGA-G-TTCAA-TAAAAACA--A---CACAAGGAG----A------AGGGGG----GGGGGGGT--AT--AG-ACCT--ACG------TTCTACTT-GTGATTTATTAG-T-AATAACAAGCAAAT-TGTGT--A------TA-TACGCGCGTGTAGT--CAA-TTTAG-AAATAANAAGCAAAT-TGTGTA------TAT-ACACGCGTGTAGN--CAATTT-AGAA-GGAAAAA---G-AA--T-A--T-GTAAAGCATTTA-CGTCTTT-GG-AAAA--A--CAAA-CC--A-C-GAT------A-----TT----C-CCC----------CACCTTTCTG--TG-A-----CTGA--CATTACGATCTG-TG---A----CGTTGGGTT-GTAGG--CCGAATTATC-G-CTTAA-T------TACTCCGC--AA-TTCCCC--C-GGCCTTTCGA-GGC-TCAAACCT-ATAAGGCCC----GATACCTA--TGCGTTCAACA-AAA--ATC-GCTTTCA--TTG-TAACTTTCTC-T-CTCAGCGATC-GGTAA----TGC---GTAAAGAA-TTTT----TGCCACCAC---CTGTCAAA-AGAATC--GTTC---GCTGTCATGAT--TGTA-TTCTG-GGTGTGACGTCAC--GCTG-TTGAAG--TCTCG-CA--TAGGA-----TATAAA--C-T------CG---C--ATACGTTCGGCT-ATTTCC---G-TAAA--GTACA-TAGTTGTAAGGTA----CGTTTTA-GA-AGA-A-TAAA-TCGAGTT-----TA-TATTCATAAGACAAATTTAT--T-TTTC---AGAAAAGT-AG-CG-TN-TATTG-GCCATC-AAACACC--TATTTA-TTTAGT----TTC-TTT-TTT------AC-----G---CG-TG--CG---AAGTTT--AATAGA--CTTAA-CNAAAAAAAAG-CT--CC--ATGAA-CTGT----CA-----GTAT---TG-GTAAAAAG---TGC-CGGGA-CCCGCTCT
Reference ( family-617 ) : NNACATCCTTCTTTT-AATAAAATAAATG-TATTGTAAA-T-A-CGTATTAATGGGAAAGCCTTTTAAATGA-TTAGAAT-TTACAC-------ATT-T-TTT--TTTCAA-TA--------------TTGTGG--G-AATCA-ATATAANNAATATTCCAATCGTAT---GGATATGTAANATACAAT--T-----CGA-T----GACATGTA-AA------ATGCATT--AG---TATTGTAA----TNCTG-AAACGATTTTG-CAGGAAAATATTAAACACTG---TCACA-GG----TC-TTNACATT-----T-GTAACTTTATC---TTTC-TAAA--A--TGACACTT-CTGAATTC-TC-T--AAACTT-TCATGTGA-TT----GGTATTTTC------T-TT---A--TGCGACAAATGNA-CAT-TG-AA-GCATGT-CATACATAATGAAT-AATAATTTAA--G-TT-AAC-AAA---A-CA-ACNACACAATGG--AAAAAAAT--TGA-G-TTCAA-TAAAAACA--A---CACAAGGAG----A------AGGGGG----GGGGGGGT--AT--AG-ACCT--ACG------TTCTACTT-GTGATTTATTAG-T-AATAACAAGCAAAT-TGTGT--A------TA-TACGCGCGTGTAGT--CAA-TTTAG-AAATAANAAGCAAAT-TGTGTA------TAT-ACACGCGTGTAGN--CAATTT-AGAA-GGAAAAA---G-AA--T-A--T-GTAAAGCATTTA-CGTCTTT-GG-AAAA--A--CAAA-CC--A-C-GAT------A-----TT----C-CCC----------CACCTTTCTG--TG-A-----CTGA--CATTACGATCTG-TG---A----CGTTGGGTT-GTAGG--CCGAATTATC-G-CTTAA-T------TACTCCGC--AA-TTCCCC--C-GGCCTTTCGA-GGC-TCAAACCT-ATAAGGCCC----GATACCTA--TGCGTTCAACA-AAA--ATC-GCTTTCA--TTG-TAACTTTCTC-T-CTCAGCGATC-GGTAA----TGC---GTAAAGAA-TTTT----TGCCACCAC---CTGTCAAA-AGAATC--GTTC---GCTGTCATGAT--TGTA-TTCTG-GGTGTGACGTCAC--GCTG-TTGAAG--TCTCG-CA--TAGGA-----TATAAA--C-T------CG---C--ATACGTTCGGCT-ATTTCC---G-TAAA--GTACA-TAGTTGTAAGGTA----CGTTTTA-GA-AGA-A-TAAA-TCGAGTT-----TA-TATTCATAAGACAAATTTAT--T-TTTC---AGAAAAGT-AG-CG-TN-TATTG-GCCATC-AAACACC--TATTTA-TTTAGT----TTC-TTT-TTT------AC-----G---CG-TG--CG---AAGTTT--AATAGA--CTTAA-CNAAAAAAAAG-CT--CC--ATGAA-CTGT----CA-----GTAT---TG-GTAAAAAG---TGC-CGGGA-CCCGCTCT
gi|1 : ACATCCTTCTTT--AATAAAATAA-TGCTATTGT-------------TAAT------------TAAATGA-TTAGAAT-TTACACAGTTATTATT-TATTT--TTTC-A-TA--------------TTGTGG--GAAATCA-ATATA--------TTCAATTGT-------ATATGTAATATACAAT--TTGAAACAA-TTTAAAACATGTATAAATATACATGTATT--AGTAATATTGTAAAGATTTCTGAAAACGATTTTGCCAAGAAAATAT--AACACTGCACTAACA-AGTAAATCGTTAACATTCTCCCT-ATACTTTTATTCTGTTTC-TAAAATA--TGCCACTTACTGAATTCTTC-TAAAAAC-T-TCATGTGA-TTTTCGGGTATTTTC------TGGT---A--TGCG---AACGGA-CAT-TGAAA-GCATGTCCATACAT--TGAAT-AAAAAATTAATGG-TT---C-AAC---A-CA-ATTA-GCGATAG--AAAAAATT--TGATGTTTCAA-TAAAAACATCA---CACAAGGAGCTCCA------CGGGGGTGAAGGCGGGGTGGATTCAGCACCCTGACGTATTCTTTTTACTT-GTGCTTTATTAGCT-AATAAAAAGCAAAT-TGTGT--AATACATTG-TACACGCGTGTAGGAACAA-TTTAG-AAAGGAAAAACGA
gi|1 : cactggAATAAAAAGCAAAT-TGTGTAATACATTGT-ACACGCGTGTAGGAACAATTT-AGAAAGGAAAAACGAG-AA--TTA--T--TAGAGAATTTAACGTCTTT-GG-AAAA--AAACAAA-CCTAA-CTGATCAATTAA-----TT----C-CCCATATATGCGCCACCTT-CTGCTTG-ATAAAACTGA--CATTACGATCTG-TGCGAA----CGTGGGGTTTGTAGGT-CCGAACTATTTA-TTTAA-TCTGCCTTACTCCGT--AAATTCCCA--C-G-CCTTTCGAAGGC-TCAAACCTTACAAGGCCCCAAGGA-ACCT---TGCGTTTCACACAAA--ATCAGCTTTC---TTGCTAACTTTCTCGT-CTCAGCATCC-GGTAAATAATGC---GTAAAGAAATTTT----TGCC-CCACATCCTGTCAAAGAGAATTCTGTTCCTCGCTTGCATGAT--TGTA-T-CTGTGGTGTGAGTTCACCTGCTGGCTGAAAGTTCTCG-CA--TATGAAGCTATATAAA--C-CTCACTACGGTTC--ATACTCTCGCCTTATTTTCCTCGCTAAATCGTACA-TA-TTGTAAGGTATCTGCTTTTTA-AA-AGA-A-TAAA-TCGAGTTGTCTGTA-TATT-ATAATACAAATTTATA-T-TTTC---AGAAAAGTGAG-CG-TT-AATTG-GTCATC-AAAAACCTATATCTA-TTTA------TTC-TTT-TTTCATCTAAC---------CG-TT--CT---AGAT-----ATAGA--CTTAGTCAAAAAAAGAGACTTCCT--ATGAA-CTGTTCTGCA-----GTA----TG-GTAAAAAGCGATGCGCGGGATCCCGCTCTgaattattagagaatttaacgtctttggaaaaaaacaaacctaactgatcaattaattccccatatatgcgccaccttctgcttgataaaactgacattacgatctgtgcgaacgtggggtttgtaggtccgaactatttatttaatctgccttactccgtaaattcccacgcctttcgaaggctcaaaccttacaaggccccaaggaaccttgcgtttcacacaaaatcagctttcttgctaactttctcgtctcagcatccggtaaataatgcgtaaagaaatttttgccccacatcctgtcaaagagaattctgttcctcgcttgcatgattgtatctgtggtgtgagttcacctgctggctgaaagttctcgcatatgaagctatataaacctcactacggttcatactctcgccttattttcctcgctaaatcgtacatattgtaaggtatctgctttttaaaagaataaatcgagttgtctgtatattataatacaaatttatattttcagaaaagtgagcgttaattggtcatcaaaaacctatatctatttattcttttttcatctaaccgttctagatatagacttagtcaaaaaaagagacttcctatgaactgttctgcagtatggtaaaaagcgatgcgcgggatcccgctct
gi|10 : cactggacatccttctttaataaaataatgctattgttaattaaatgattagaatttacacagttattatttattttttcatattgtgggaaatcaatatattcaattgtatatgtaatatacaatttgaaacaatttaaaacatgtataaatatacatgtattagtaatattgtaaagatttctgaaaacgattttgccaagaaaatataacactgcactaacaagtaaatcgttaacattctccctatacttttattctgtttctaaaatatgccacttactgaattcttctaaaaacttcatgtgattttcgggtattttctggtatgcgaacggacattgaaagcatgtccatacattgaataaaaaattaatggttcaacacaattagcgatagaaaaaatttgatgtttcaataaaaacatcacacaaggagctccacgggggtgaaggcggggtggattcagcaccctgacgtattctttttacttgtgctttattagctT-AG-CG-TT-TGTTAAGCCAAC-TAGCACC--TCTTGA-TTTAGT----AT--TTT-TAT------AC-----GATGCA-TG--TG---CAGTC---ATTAGA--CT--A-CTCAACAAAAG-CT--CC--ATGAA-TTGT----CA-----ATAT---TATGTAAAAAG---TGC-CGGGA-CCCGCTC
gi|11 : aatattgcatcatcctaaatgaatatttcattttctacattTCTG-GGTGTGACGTCAC--GTTG-TTGAAG--TCCCG-TATGTAAGA-----TGAAAT--C-T------CG---C--ATACGTTCGTTT-ATTTCC---G-TAAA--ATGCAGTAGCTGTAAGGTA----CGTTTGA-TG-AAA-A-TAAA-TCG
gi|12 : AGT-AG-CGGTAATATTT-GGCATC-AAACACC--TATTTATTTTAGT----TTC-TTTATTT------TT-----GGATCG-TGGTCG---AAG--T--AA-AGA--CTTAA-ATCAAAAAAAG-CT---T--ATGAA-CTGT----CA-----GTAT---
gi|13 : A-TCTAAT----TTT-TTG-TAT------ACAATGGG---TG-TG--CA---A---TT--ACTAGT--TTCAC-TCAACAAAAAG-CC--CC--TTTAA-CTGC----CAATGTTGTAT---TA-AAAAAAAG---TGT-CTTGA-CCCGCTCT
gi|14 : T----TTCGTTT-TTT------AT-----A---CGATG--CGTTTAAAATT--ATTCGA--TTTA--CTTTAAAAAAG-CT--CC--ATGAA-CTAT----CA-----ATAT---TG-GTTAAAAG---TCC-TGGGC-CCgt
gi|15 : gtaAATATTAAACCCTG---TCACA-G------T-TTCACATT-----C-CTAGCTTTCTC---TTCC-TAAA--AATTGACACTT-CAGAAGTT-TC-
gi|16 : -GTAAAAAG---TGC-CGGGA-CCCGCTCT
gi|2 : ACAGCCTTCTTGT-GATAATATAAATG-TATTGTAAAAT-AACATATTAATGGGAAAGCCTTTTAAGTGA-TTAGAAT-TTACAC-------ATT-T-TTT--TTTCA--TAAAGGGCCTGGACCTTTATGATTG-AA--A-ATATAAGAAACATATCTATCATATTGGGGAAAGGCAATATATAATCTT-----CGACT----GATATGTA-AA------ATGCATT--A----TATTGT------TGCTG-AAATGATTT-G-CAGGACAATATTAA-CAATG---TCACA-GG----TC-TGAACATT-----T-GTAACTTTATG---T--C-TAAA--A--TGACACTT-CTGAATAC-TC-T--AAACTT-TCATGTGA-TT----GGTATTTTC------A-TT---A--TGTGACAAATGCA-TAT-TG-AA-GCATGT-CATACACAATAAATTAATGATTTAA--G-TTTAAC-AAA---AACA-ACAACACAATGG--GGAAACAT--TGA-G-TTCAA-TGAAAACA--A---CACAAGGAA----A------AGGGGG----AAGGGGGT--AT--AG-ACCT--ACG------T-CTTCTT-GTGATTTATTAG-T-GATCACATGCAAAT-TGTGT--A------TA-TACACGCGTGTAGT--C----TTAG-AAATAACAAGCAAAT-TGTGTA------TAT-ACACGCGTGTAAT--CAATTT-AGAA-GGAAAAA---G-A---T-A--T-GTAAAGCATTTA-CGTCTTC-GG-AAAA--A--CAAA-CC--A-C-GAT------A-----TT----C-CCC----------AACCTTTCTG--TG-A-----CTG-------------TG--A---A----CGTTGGTTT-GTAGG--CCGA-TTATC-G-CTT---T------TACTC-GC--AA-TTCCCT--C-GGCCTTTCGA-GGC-TCAAACCT-ATAAGACAC----GATACCTA--TGCGTTCA-CA-AAA--ATC-GCTTTCA--TTG-TAACTTTCTC-T-CTCAGCGATC-GGTAA----TG----GTAAAGAA-TTTT----TACCATCAC---A-GTCAAA-AAAATC--GTTC---GCTGTCATGAT--TGTA-TTCTG-GGTGTGACGTCAC--GATG-CTGAAG--TATAG-CA--TAGGA-----TATAAA--C-T------CG---C--ATACGTTCGGCT-ATTTCC---G-TAAA--GTACA-TCATTGTAAGGTA----TGTTTTA-GA-AGA-A-TAAA-TCGAGTT-----TA-TATTCATAAGACAA--TTAT--T-TTTC---AGAAAAGT-AG-CG-TA-TATTG-GCCATC-AAACACT--TATTTA-TTAAGTGGGGTTT-TTT-TTT------AC-----G---CG-TG--GG---AAGTTTTGAA-AGA--TTAAA-AAAAAAAAAAG-CT--TC--ATGAC-CTGG----CA-----GTAT---TG-GTAAAAAG---TGC-CGGGA-CCCGCTCTttaa
gi|3 : ttTAACTGA-TTAGAATGTTACAC-------ATT-T-ATTCATTTCAAATA--------------TCGTGG--G-AATAATATATAAACAATATTC--A----AT---GGATATGTAAAATACACT--T-----C-A-T-----AC-TGTA-TA------GTA-ATTTTAG---ACTTG--------GCTG-AAACGATTTTGGCAAGAAAATATTACACACTG---TCACAAGG----TC-TTTACATT-----T-GTAACCTTTTC---TTTCCTAAA--A--TGACACTT-CTGAATTC-TCGT--AAACGTGTCATGTGAATT----GGTATTTCT------T-TTCTTA--TGCGACGAATGGA-CATCTG-AAAGCAT-C-CA-ACAT---GAA--GATAATTAAA--G-T------------------CAACACAG-GG--AAAAAAATCTTGA-G-TTCAAATAAAAACA--A---CACAA-GAG----A------GTGGGG----GGGGGGGTA-AT--AG-ACCT--ACG---------TACTT-GT-ATTTATTA--T-AATAACAAGCAAATCTGTGT--A------TATTCCGCGCGTGTATA--CAATTTTAG-AAGGAAAAAAAAAA
gi|3 : c-TACGTACTTGTATT--TA---TTAT-AA-TAACAAGCAAATCTGTGTA------TATTCCGCGCGTGTATA--CAATTTTAGAA-GGAAAAA---A-AAAAG-A--T-GTAAAGCATT-A-CTCTTTT-GGCAAAATCA--TAAA-CC--A-C-GAT------A-----TTATTCCACCC----------CACCTT-CTG--TG-A-----CTGA--CATTACGATCTA-CG---GAGACCGTTGGGTT-GTAAGGCCCGAATCATC-G-CTT---T------TACTCCGT--AA-TTCCCC--CAGGC--TTCGA-GGC-TCAAACCT-ATAAG-CCC----GA-ACCTA--TGCGTTCAACA-AAA--AT--GCGTTCAAATTG-TAACTT-CTC-TTCTCAGCGATCCGGTAA----TG-----TAAAAAA-TTTT----TGCCAC-AC---CTGTCAAA-AGAATC--GTTC---GCTGTCATGATATTGTACTTCTG-GGTGTGACTCCA---GCTG-T--AAG--TCTCG-CAA-TAG--------ATAAA--C-T------CT---CCAATACGTTCGGCT-ATT-CC---G-TAAA---TG-A-TAGTTGTAAGGTA----TGTCTTATAA-AGA-AATAAA-TCGAGTT-----AAATATT-ATATTACAAATTTAT--T-TTTTTCTAGAAAAGT-AGGCG-TT-TATTG-GCCATCTAAACACC--TATTTA-TTTAGT----TTT-TAT-TTG------AT-----G---CG-TG--TG---AAGTTA--TACAGA--CTTAA-TCAAACAAAAG-CT--TCAAATGCA-CTGT----CA-----GTATCTGTA-GTAAAAAG---TGC-CGGGA-CCCGCTgatgtaaagcattactcttttggcaaaatcataaaccacgatattattccaccccaccttctgtgactgacattacgatctacggagaccgttgggttgtaaggcccgaatcatcgcttttactccgtaattcccccaggcttcgaggctcaaacctataagcccgaacctatgcgttcaacaaaaatgcgttcaaattgtaacttctcttctcagcgatccggtaatgtaaaaaatttttgccacacctgtcaaaagaatcgttcgctgtcatgatattgtacttctgggtgtgactccagctgtaagtctcgcaatagataaactctccaatacgttcggctattccgtaaatgatagttgtaaggtatgtcttataaagaaataaatcgagttaaatattatattacaaatttatttttttctagaaaagtaggcgtttattggccatctaaacacctatttatttagtttttatttgatgcgtgtgaagttatacagacttaatcaaacaaaagcttcaaatgcactgtcagtatctgtagtaaaaagtgccgggacccgct
gi|4 : ctaactgattagaatgttacacatttattcatttcaaatatcgtgggaataatatataaacaatattcaatggatatgtaaaatacacttcatactgtatagtaattttagacttggctgaaacgattttggcaagaaaatattacacactgtcacaaggtctttacatttgtaaccttttctttcctaaaatgacacttctgaattctcgtaaacgtgtcatgtgaattggtatttcttttcttatgcgacgaatggacatctgaaagcatccaacatgaagataattaaagtcaacacagggaaaaaaatcttgagttcaaataaaaacaacacaagagagtgggggggggggtaatagaccACATCCTTCTTTTTAATAAAATAAATG-TATTGTAAA-TTA-CGTATTAATGGAAAAGCTTTTTAAAAGAATTAGAAT-TTACAC-------GTTAT-TTTA-TTTCAA-TA--------------TTGTGG--G-AATCA-ATATAATTAATATTCCAAT---------GATATGTAAAATACAGT--T-------A-T-----ACATGTA-A------------TT--AG---TAT---AA----TTTTA-GA-----TTTG-CAGGAAAATATTAACAACTG---TCACAAGG----TC-TTTACATT-----TTGTAACTTTATC---TTTC--AAA--A--TGACACTT-CTGAATTC-TC-T--AAACTT-TCATGTGA-TT----GGTATTTTC------T-TT---A--TGCGATAAATGTAGCAT-TG-AA-GCATGC-CATACATGATAAA--------TTAA--G-TT-----------------CAACACAATGGAAAAAAAAAT--TGA-G-TTCAA-TAAAAACA--ATACCACAAGGAG----AATGGGGAGGGGG----GGGGGGGT--AT--AG-ACCT--ACG------TTCTACTTGGTGATGTATTAG-TAAATAACAAGCAAA--TATGT--AT-----TA-TACATGCGTGTAGA--CAA-TTTAG-AAGGGAAAAAAAGAT-TGT
gi|4 : ctgTTAGTAAATAACAAGCAAATATGTAT-------TAT-ACATGCGTGTAGA--CAATTT-AGAA-GGGAAAA---A-AA--G-A--TTGTAAAGCATTTA-CGTCTTTTGG-AAAA--A--CAAAACC--ATC-GAT------AATTATTC----C-CCC----------CACCTT-CTG--TGGA-----CTGA--CATTACGATCTG-TGG--A----CGTTGGGTT--TAGG--CCCGATTATC-GGCTTAAAT------TACTC-GC--AA-TTCCCCTTC-GGCCTTTCGA-GGCCTCAAACCT-ATAAGGCCC----GATACCTA--TGCGTTTAACG-AAACCGTT-GCTTTCAT-TTG-TAACTTTCTaaagcatttacgtcttttggaaaaacaaaaccatcgataattattccccccaccttctgtggactgacattacgatctgtggacgttgggtttaggcccgattatcggcttaaattactcgcaattccccttcggcctttcgaggcctcaaacctataaggcccgatacctatgcgtttaacgaaaccgttgctttcatttgtaactttcttc
gi|5 : ctgacatccttctttttaataaaataaatgtattgtaaattacgtattaatggaaaagctttttaaaagaattagaatttacacgttattttatttcaatattgtgggaatcaatataattaatattccaatgatatgtaaaatacagttatacatgtaattagtataattttagatttgcaggaaaatattaacaactgtcacaaggtctttacattttgtaactttatctttcaaaatgacacttctgaattctctaaactttcatgtgattggtattttctttatgcgataaatgtagcattgaagcatgccatacatgataaattaagttcaacacaatggaaaaaaaaattgagttcaataaaaacaataccacaaggagaatggggaggggggggggggtatagacctacgttctacttggtgatgtaCTACTT-CTGATTTATTCG-T--ATAGCAAGCAAAA-TGAGTACA------TA-TACATGCATGTTGT--CAA-ATTAG---ATAAAAATCAAtc
gi|5 : ATAGCAAGCAAAA-TGAGTACA----TAT-ACATGCATGTTGT--CAAATT-AGA---TAAAAA---TCAA--T-ACAT-TTAAAGTATTTA-CGTCTAT-GG-AAAA--A--TATC-CC--A-C-GAC------A-----TT----C-TCCT---------CTTCTTTCTG--CG-G-----CTGATGCATTG-----TA-TT---A----CGTTG-----------------TTATC------AA-T------T---CCACTAAG-TTTCCC--C-TGACTTT-GG-GGT-TCAAACCT-GTAAGGTCG----GATATTTAAATGCATTCA-CA-AAA--TTC-ACTTTCA--TTA-TA-CTTT-TC-T-CTCCGTAATC-AGTAA----TG----GTCAAAAA-CCTTGTTGTGTCAC-------TGTCAAA-AGAACG--GTCC---ACAGTTGTGCT--TGTG-TTCTA-GGTGTGTCGCAAT--ACTG-TTAAAG--TCTCG-CATGTGGGA-----TG-AAA--TAT------CG---C--ACATGTTTGACC-ATTTCC---A-TAAA--ATATA-AAGTTATACGGTA----CG---AA-GAGAAA-A-AAAA-TC----C-----TA--ACTC--AAG-CATTTTTTT--T-TTTC---AAAAATGT-Atacatttaaagtatttacgtctatggaaaaatatcccacgacattctcctcttctttctgcggctgatgcattgtattacgttgttatcaattccactaagtttcccctgactttggggttcaaacctgtaaggtcggatatttaaatgcattcacaaaattcactttcattatacttttctctccgtaatcagtaatggtcaaaaaccttgttgtgtcactgtcaaaagaacggtccacagttgtgcttgtgttctaggtgtgtcgcaatactgttaaagtctcgcatgtgggatgaaatatcgcacatgtttgaccatttccataaaatataaagttatacggtacgaagagaaaaaaaatcctaactcaagcatttttttttttcaaaaatgtacattactaacaaagatacactta
gi|6 : ctacttctgatttattcgt-TTTACATT-----T-GTAACTTTATC---TTTC-TAAA--A--TAACACTT-TTGAATTC-TC-T--AAACTT-TCATGTGA-TT----GTTATTTTTTTTAAGT-TT---A--TGTGACAAATGTA-CAT-TG-AA-ACATGT-CATAC---ATGAAT-AAT--TTTAG--T-TT-AACAAAA---A-CA-ACTACACAATGGA-AAAAAAAA--TGA-T-TTCAA-TAAAAGCA--A---CACAAGGTG----A-----------------GGGGGGT--AT--AG-ACCT--ATG-------TCTAATT-GTGGTTTATTAG-T-AATAACAAGCACAT-TATGT--A------TA-TACACGCATGTAGT--CAA-TTTAG-AAcattactaacaaagatacactta
gi|6 : TGTGGT--TTA-TT-AG-TAATAACAAGCACAT-TATGTA------TAT-ACACGCATGTAGT--CAATTT-AGAA-GGGGGAA------A--T-A--T-GTAATGCATTTA-CGTCTTT-GA-AAAA--A--CAAA-CC--A-T-GAT------A-----TT----CTCCC----------CACCTTTCTA--TA-A-----CTGA--CATTACGATCTGTTG---A----CGTTGGGTT-GTAgggggaaatatgtaatgcatttacgtctttgaaaaaacaaaccatgatattctccccacctttctataactgacattacgatctgttgacgttgggttgta
gi|7 : tttacatttgtaactttatctttctaaaataacacttttgaattctctaaactttcatgtgattgttattttttttaagtttatgtgacaaatgtacattgaaacatgtcatacatgaataattttagtttaacaaaaacaactacacaatggaaaaaaaaatgatttcaataaaagcaacacaaggtgaggggggtatagacctatgtctaatACTTTTTC-T-CTCAGCGATC-GGTAA----TGCATGGTAAAGAA-TTTT----TATCACCA----------------------TTC---GCTGTCATGAT--TATG-TTCTG-AGTGTGACGTCAC--ACTT-TTAAAG--TCTCGATA--TAGGA-----TATAAACTC-T------CG---C--ATACGTTCGGCT-ATTTCC---G-TAAA--GTACA-TACTAGTA----------GTTGT-------A-A-TAAA-TCGAGTT-----TA-TATTCATAAGACAAATCTATTAT-CTTC---AGAAAGGT-AA-CG-TA-TATTG-GC
gi|8 : TTCC---G-CAGA--ACA-A-GAGTTGTAAGGTA----TGTTTTA-GA-AGAGA-TAAAATCGAGTT------A-TCTTCATAGGACACATT-AT--TATTTC---AGAAAAG--AG-CG-TA-TATTT-GCCATC-AA-CACC--TATTT--TTCGAT----T---------------------------CG-TG---G---AAGT----AATAGAACTTTAT-TAAAAAAAAAG-CT--TCG-ATGAAACTGT----CA-----GTAT---GG-TTTTAAAC---TG--CGGGA-CCC
gi|9 : tcggctcgttcccgtaaatcca----TACTC-ACACAATTT-G-TAGGAAAATATTAAATACTG---TAACA-GT----TC---AGCATT-----T-GTAACTTTATC---TTTA-TGAA------------T-C--AATT------------TG-TCA---GA-TA----GGTATTTTC------T-TT---AAGAGTGACAAATGCA------------CATGT-CATA---AATGAA--A--AATTGAA--T-TG-AAC-AAA---AGCA-ACCAa
gi|9 : ttatcattTTTAA--GAGT-GAC-AAATGCA-CATGTCATA-AATG-----AAAAAT--TGA-A-TTGAA-CAAAAGCA--A---C-CAAGGAG------------GGGGG----AGGGGGGT--aggaggggggaggggggtcacattcagttg
blockSeqs : TT A . AAAATAACA GGG C A G . AT CA AAA AAGGGCCTGGACCT TT . TA T AGA CT TCATATTGGG T CTTCGACTGATATGTAAAATGCATTATATTGT G . TGG A . AGG . C . T . C AAT . A . GT T G A . TTTAAGT CTTA C GC C . A . ACA TTAATGATTTAAGTTTAACAAAAACA A C AA CT G A ATAC AATGGGGA . A . . . TT G . AA TC ACA T A T AATT T A C CA T T T . TCAATACATT . T C TCA A . T . ATTATTCCACCC T . GA TG C CGGAGAC G GC A GGCTTAAAT C TA . TT A . C . A . T AAA A . CCGTT AAA . C . T C . CATG . GTTG CACA . C . AT C . C . . A TG . A CTCT . CA T . . . A C G G A C TAA G A A T A C A TA A TCT . G G AA A T G . T G GGGGTTT A ATACGATGCGTTTAAAATTATT AC T ACTC . TCAA A . ATGTT CTG T . . .
blockSeqs : T A . AAATTACG GGA T . . . T A AA . . . TC . AAC CA ATG A TCATACTGTATAGTAATTTTAGACTTG G . TG A . AGG . A . . . . A . T . T G . . . A AAG G T . . . . ATG TAATTTTAGTTTAACAAAAACA A C A . G . A AA . . . . . T . . G T AT . G A AAT . C A . . A . . AAAAAGATG . . . A . . . . AATTATTCCCCC T . A . C TGGA G . A GCTTT C . . . . . . . G . T A A . ATC AT . C . . . . . . . ACCT . C . . . . C . . . TG . T TAT . . G . . . G C . A A T GAG . . . A . C T . . . . . . T . . A . . G TTCG . ACGATGCATGTGCAGTCATT . C AATC . TCG . . . . . . . .
blockSeqs : . . . T . A . . . . . ATT . T A TATACATGTAATTAGTATAA T . G C . GG . T . . . . A . T . T T . . . T A T C . . . . AT AAATTGAATTGAACAAAAGCA A C . . G . A AG . . . . . T . . A A A . G T AAA . A . . . A . . AAAGATTG . . . A . . . . ATTCTCCT T . A . C TTGA G . . GCTTT . . . . . . . . G . T A . . TTC A . C . . . . . . . CA . G . . . . T . . . A . T CT . . G . . . A T . G A T TG . . . T . C A . . . . . . A . . A . . A TTC . TTGGATCGTGGTCGAAGTAA . T CTCA . CC . . . . . . . .
blockSeqs : A . G A . GT . T . . . . A . T . T T . . . T A T C . . . . A GATAATTAAAGT T C . . T . A A . . . . . . . . A T A . A A AAT . C . . . T . . GATATG . . . A . . . . ATTCTCCC . . G . . TTA . . . AAT . . . . . . . . . . . A . . AT A . T . . . . . . . T . . . . . . C . . . . . T CT . . A . . . G C . G C C GA . . . T . C A . . . . . . T . . A . . G TTT . ACAATGGGTGTGCAATTACT . A AAAA . CC . . . . . . . .
blockSeqs : . . G . T . . . . A . T . . T . . . T A C . . . . . . TTAAGTT C T . . A . A . . . . . . . A . A T TAT . A . . . T . . ATATG . . . A . . . . ATTCCCC . . A . . AA . . . . . . . . . . CT . . G . . . A . . C A T GA . . . . . . . . . . . . . A . . . . . G TTT . ACGCGTGGGAAGTTTTGAA . T ATCA . CC . . . . . . . .
blockSeqs : . A . . . . . . . . C . A T A . C . . . . . . G . . . . . . . . . A . . A AT . ATGCGTGTGAAGTTATAC . T TTAA . TC . . . . . . . .
blockSeqs : T . . A . T . CGTGGAAGTAAT . . CTT . T . . . . . . . .
blockSeqs : . C
blockSeqs : C
blockSeqCons : TG* *** GG***** ***** *** A**** T*** **** T******* AC* TAATTAGTTAACAAAAACA*************** G** A***** AA********** **** ** ** ** T******* A******** T** ****** T** ANATG************ A**** ** ATTCTCCC************************* ** A****** TTGA******* G* ** GCTTT*********** **** A** NTC*** A** **** **** C******* C** *** C** ** ***** CT********* *** *** A** T**** T***** ** ** ANNA* CC**** **** ***
originalCons : NNACATCCTTCTTTT-AATAAAATAAATG-TATTGTAAA-T-A-CGTATTAATGGGAAAGCCTTTTAAATGA-TTAGAAT-TTACAC-------ATT-T-TTT--TTTCAA-TA--------------TTGTGG--G-AATCA-ATATAANNAATATTCCAATCGTAT---GGATATGTAANATACAAT--T-----CGA-T----GACATGTA-AA------ATGCATT--AG---TATTGTAA----TNCTG-AAACGATTTTG-CAGGAAAATATTAAACACTG---TCACA-GG----TC-TTNACATT-----T-GTAACTTTATC---TTTC-TAAA--A--TGACACTT-CTGAATTC-TC-T--AAACTT-TCATGTGA-TT----GGTATTTTC------T-TT---A--TGCGACAAATGNA-CAT-TG-AA-GCATGT-CATACATAATGAAT-AATAATTTAA--G-TT-AAC-AAA---A-CA-ACNACACAATGG--AAAAAAAT--TGA-G-TTCAA-TAAAAACA--A---CACAAGGAG----A------AGGGGG----GGGGGGGT--AT--AG-ACCT--ACG------TTCTACTT-GTGATTTATTAG-T-AATAACAAGCAAAT-TGTGT--A------TA-TACGCGCGTGTAGT--CAA-TTTAG-AAATAANAAGCAAAT-TGTGTA------TAT-ACACGCGTGTAGN--CAATTT-AGAA-GGAAAAA---G-AA--T-A--T-GTAAAGCATTTA-CGTCTTT-GG-AAAA--A--CAAA-CC--A-C-GAT------A-----TT----C-CCC----------CACCTTTCTG--TG-A-----CTGA--CATTACGATCTG-TG---A----CGTTGGGTT-GTAGG--CCGAATTATC-G-CTTAA-T------TACTCCGC--AA-TTCCCC--C-GGCCTTTCGA-GGC-TCAAACCT-ATAAGGCCC----GATACCTA--TGCGTTCAACA-AAA--ATC-GCTTTCA--TTG-TAACTTTCTC-T-CTCAGCGATC-GGTAA----TGC---GTAAAGAA-TTTT----TGCCACCAC---CTGTCAAA-AGAATC--GTTC---GCTGTCATGAT--TGTA-TTCTG-GGTGTGACGTCAC--GCTG-TTGAAG--TCTCG-CA--TAGGA-----TATAAA--C-T------CG---C--ATACGTTCGGCT-ATTTCC---G-TAAA--GTACA-TAGTTGTAAGGTA----CGTTTTA-GA-AGA-A-TAAA-TCGAGTT-----TA-TATTCATAAGACAAATTTAT--T-TTTC---AGAAAAGT-AG-CG-TN-TATTG-GCCATC-AAACACC--TATTTA-TTTAGT----TTC-TTT-TTT------AC-----G---CG-TG--CG---AAGTTT--AATAGA--CTTAA-CNAAAAAAAAG-CT--CC--ATGAA-CTGT----CA-----GTAT---TG-GTAAAAAG---TGC-CGGGA-CCCGCTCT
finalCons : NNACATCCTTCTTTT-AATAAAATAAATG-TATTGTAAA-T-A-CGTATTAATGGGAAAGCCTTTTAAATGA-TTAGAAT-TTACAC-------ATT-T-TTT--TTTCAA-TA--------------TTGTGG--G-AATCA-ATATAANNAATATTCCAATCGTAT---GGATATGTAANATACAAT--T-----CGA-T----GACATGTA-AA------ATGCATT--AG---TATTGTAA----TNCTG-AAACGATTTTG-CAGGAAAATATTAAACACTG---TCACAGG-----TC-TTNACATT-----T-GTAACTTTATC---TTTC-TAAAA----TGACACTT-CTGAATTC-TCT---AAACTT-TCATGTGA-TT----GGTATTTTCT-------TT---A--TGCGACAAATGNA-CAT-TG-AA-GCATGT-CATACAC-ATGAATAATTAGTTAACAAAAACA---------------ACNACACAATGG--AAAAAAAT--TGAG--TTCAA-TAAAAACAA-----CACAAGGAGAA----------GGGGG----GGGGGGGT--AT--AG-ACCT--ACGT-------CTACTT-GTGATTTATTAG-T-AATAACAAGCAAAT-TGTGTA--------TA-TACGCGCGTGTAGT--CAA-TTTAG-AAATAANAAGCAAAT-TGTGTA------TAT-ACACGCGTGTAGT--CAATTT-AGAA-GGAAAAAANATG------------TAAAGCATTTA-CGTCTTT-GG-AAAAA----CAAA-CC--A-C-GATATTCTCCC-------------------------CACCTTTCTG--TGA------CTGA--CATTACGATCTGTTGA-------CGTTGGGTTG-TAGG--CCGAATTATCGCTTT-----------TACTCCGC--AA-TTCCCC--C-GGCCTTTCGA-GGC-TCAAACCT-ATAAGGCCC----GATACCTA--TGCGTTCAACA-AAANTC---GCTTTCA--TTG-TAACTTTCTC-T-CTCAGCGATC-GGTAA----TG----GTAAAGAA-TTTT----TGCCACC-------GTCAAA-AGAATC--GTTC---GCTGTCATGAT--TGTA-TTCTG-GGTGTGACGTCAC--GCTG-TTGAAG--TCTCG-CA--TAGGA-----TATAAACT---------CG---C--ATACGTTCGGCT-ATTTCC---G-TAAAA--TACA-TAGTTGTAAGGTAT----GTTTTA-GA-AGA-A-TAAA-TCGAGTTT-----A-TATTCATAAGACAAATTTAT--T-TTTC---AGAAAAGT-AG-CG-TN-TATTG-GCCATC-AAACACC--TATTTA-TTTAGT----TTC-TTT-TTT------AC-----G---CG-TG--CG---AAGTTT--AATAGA--CTTAANNA-AAAAAAAG-CTCC----ATGAA-CTGT----CA-----GTAT---TG-GTAAAAAG---TGC-CGGGA-CCCGCTCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 1 4444444444 1 1 3333333 111 22 111 55555555555555 11 1 1 111 5555555555 000000000000000000000000000000000000000000000000000000000000 111 111 11111 11111 111 11111 1111 3333333333 3333333333 555555555555555 11 111 111111 444444444444 1111 11 11 11 33333333 11 222222222 1 1 2222 111 1111 11111 22222 222222222 11 444444444 11111 11111 1111 1 111 11111 111 1111 1111 1111 11 444444444444 11 111 11 111 22 11111 22222222222 111 111 111 11111111111 222222 11 111 11111111 4444444444444444444444444444444444444444 111111 1111 11111
lowQualScore : 00 7 3 5555555555 888 3 0 0 0 2222222 111 33 666 88888888888888 33 0 55 0 222 0 66 7777777777 1 0 666666666666666666666666666666666666666666666666666666666666 1 8 0 666 3 111 6 6 66666 5 1 5 44444 000 5 33333 5 1 5 9999 3 6 6 4444 6 1111111111 1 77 6 6 6 6 0000000000 99 555555555555555 3 1 99 55 000 6 111111 222222222222 4444 55 11 8 11 44444444 6 6 88 00 666666666 5 1 777 5555 4 1 66 1 1 99 6 99 6 1 99 3 1 5555 111 777 6 99 6 6 4444 99999 7 99 33333 99 2 444444444 6 2 99 8 8 666666666 99999 44444 8 8 8 3 7777 0 111 8 999 44444 999 8 1 8 8 8 7777 7777 8 8 7777 11 777777777777 8 11 444 11 88 6 000 6 99 6 55 66666 3 11111111111 111 99 1 6 000 5 222 6 5 3 1 77 33333333333 5 5 5 000000 6 6 3 55 6 111 5 5 5 66 5 6 1 99 5 1 22222222 5 0 7777777777777777777777777777777777777777 66 2 4444 5 5 555555 5 0000 22222 888 5 888 5 5
lowQualScore : .. . . .......... ... . . . . ....... ... .. ... .............. .. . .. . ... . .. .......... . . ............................................................ . . . ... . ... . . ..... . . . ..... ... . ..... . . . .... . . . .... . .......... . .. . . . . .......... .. ............... . . .. .. ... . ...... ............ .... .. .. . .. ........ . . .. .. ......... . . ... .... . . .. . . .. . .. . . .. . . .... ... ... . .. . . .... ..... . .. ..... .. . ......... . . .. . . ......... ..... ..... . . . . .... . ... . ... ..... ... . . . . . .... .... . . .... .. ............ . .. ... .. .. . ... . .. . .. ..... . ........... ... .. . . ... . ... . . . . .. ........... . . . ...... . . . .. . ... . . . .. . . . .. . . ........ . . ........................................ .. . .... . . ...... . .... ..... ... . ... . .
lowQualScore : 77 3 3 3333333333 777 7 8 0 0 5555555 000 88 555 88888888888888 88 0 88 0 222 8 00 8888888888 0 8 000000000000000000000000000000000000000000000000000000000000 0 0 8 666 2 777 7 7 77777 7 0 7 33333 000 7 77777 7 7 7 9999 2 7 7 2222 7 0000000000 0 77 7 7 7 7 0000000000 22 222222222222222 2 0 22 88 222 7 888888 222222222222 2222 88 00 0 00 88888888 7 7 33 22 000000000 7 4 444 8888 4 0 11 4 0 22 7 22 7 0 22 3 0 8888 777 777 7 22 7 7 2222 88888 3 22 33333 22 5 222222222 7 5 00 6 0 000000000 44444 00000 0 0 0 2 0000 6 888 0 666 22222 888 0 0 0 0 0 0000 0000 0 0 0000 00 888888888888 0 00 000 00 88 7 222 7 22 7 00 77777 5 22222222222 777 22 0 7 000 7 333 6 7 0 4 99 00000000000 7 7 7 222222 7 7 5 88 7 777 0 7 7 77 7 7 7 22 7 7 44444444 0 5 1111111111111111111111111111111111111111 99 2 4444 0 0 000000 0 6666 55555 888 0 888 0 0
consensus : NNACATCCTTCTTTT-AATAAAATAAATG-TATTGTAAA-T-A-CGTATTAATGGGAAAGCCTTTTAAATGA-TTAGAAT-TTACAC-------ATT-T-TTT--TTTCAA-TA--------------TTGTGG--G-AATCA-ATATAANNAATATTCCAATCGTAT---GGATATGTAANATACAAT--T-----CGA-T----GACATGTA-AA------ATGCATT--AG---TATTGTAA----TNCTG-AAACGATTTTG-CAGGAAAATATTAAACACTG---TCAC-A-GG----TC-TTNACA-TT-----TGTAACTTTATC---TTTC-TAAA--A--TGACACTT-CTGAATTC-TC-T--AAACTT-TCATGTGA-TT----GGTATTTTCT-TT---A------TGCGACAAATGNA-CAT-TG-AA-GCATGT-CATACACA-----TGAA--TAATT--AGTT-AACG----AAAACAACNACACAATGG--AAAAAAAT--TGA-G-TTCAA-TAAAAACA--A---CACAAGGAG----A------AGGGGG----GGGGGGGT--AT--AG-ACCT--ACGT------TCTACTT-GTGATTTATTAG-T-AATAACAAGCAAAT-TGTGT--A------TA-TACGCGCGTGTAGT--CAA-TTTAG-AAATAACAAGC--AAAT-TGTGTA--TAT-ACACGCGTGTA--GTCAATTT-AGAAGGAAA--AA-ANA----TGTAA---AGCATTTACGTCTTT-GG-AAAA--ACAAA-CCA-CGATA----TTCT----CCCCACCTTTCTG--TG-----ACTGA--CATTACGATCTGT-NG-A---CGTTGGG-TTGTAGG--CCGAATTATCG-CTT-AA------TTACTCCGC-AATTCCCC--C-GGCCTTTCG-AGGC-TCAAACC-TATAAGGCCC----GATACCTA--TGCG-TTCA-ACAAAA--NTCGCTTTCA--TTG-TAACTTTCTC-T-CTCAGCGATC-GG----TA----ATG-GTAAAG-AATTTT----TG--CCA----C---T---GTCAAA-AGAAT--CGT---TCGCTGTCATGAT--TGTA-TTCTG-GGTGTGACGTCAC--GCT-GTTGAAG--TCTCG-CA--TAGG-----ATATAAA--C-T------CG---C--ATACGTTCGGC-TATTT---CCG-TAAA--GTACA-TAGTTGTAAGGTA--CG--TTTTA-GA-AGA-A-TAAA-TCGAGTT-----TA-TATTCATAAGACAAATTTAT--T-TTTC---AGAAAAGT-AG-CG-TN-TATTG-GCCATC-AAACACC--TATTTA-TTTAGT----TTC-TTT-TTT------AC-----G---CG-TG--CG---AAGTTT--AATAGA--CTTANTCAAAAAAA-AG-CT--CC--ATG-AACTGT----CA-----GTAT---TG-GTAAAAAG---TGC-CGGGA-CCCGCTCT
Reference ( family-617 ) : NNACATCCTTCTTTT-AATAAAATAAATG-TATTGTAAA-T-A-CGTATTAATGGGAAAGCCTTTTAAATGA-TTAGAAT-TTACAC-------ATT-T-TTT--TTTCAA-TA--------------TTGTGG--G-AATCA-ATATAANNAATATTCCAATCGTAT---GGATATGTAANATACAAT--T-----CGA-T----GACATGTA-AA------ATGCATT--AG---TATTGTAA----TNCTG-AAACGATTTTG-CAGGAAAATATTAAACACTG---TCAC-A-GG----TC-TTNACA-TT-----TGTAACTTTATC---TTTC-TAAA--A--TGACACTT-CTGAATTC-TC-T--AAACTT-TCATGTGA-TT----GGTATTTTCT-TT---A------TGCGACAAATGNA-CAT-TG-AA-GCATGT-CATACACA-----TGAA--TAATT--AGTT-AACA----AAAACAACNACACAATGG--AAAAAAAT--TGA-G-TTCAA-TAAAAACA--A---CACAAGGAG----A------AGGGGG----GGGGGGGT--AT--AG-ACCT--ACG-------TCTACTT-GTGATTTATTAG-T-AATAACAAGCAAAT-TGTGT--A------TA-TACGCGCGTGTAGT--CAA-TTTAG-AAATAANAAGC--AAAT-TGTGTA--TAT-ACACGCGTGTA--GTCAATTT-AGAAGGAAA--AA-ANA----TGTAA---AGCATTTACGTCTTT-GG-AAAA--ACAAA-CCA-CGATA----TTCT----CCCCACCTTTCTG--TG-----ACTGA--CATTACGATCTGT-TG-A---CGTTGGG-TTGTAGG--CCGAATTATCG-CTT---------TTACTCCGC-AATTCCCC--C-GGCCTTTCG-AGGC-TCAAACC-TATAAGGCCC----GATACCTA--TGCG-TTCA-ACAAAA--NTCGCTTTCA--TTG-TAACTTTCTC-T-CTCAGCGATC-GG----TA----ATG-GTAAAG-AATTTT----TG--CCA----C---C---GTCAAA-AGAAT--CGT---TCGCTGTCATGAT--TGTA-TTCTG-GGTGTGACGTCAC--GCT-GTTGAAG--TCTCG-CA--TAGG-----ATATAAA--C-T------CG---C--ATACGTTCGGC-TATTT---CCG-TAAA--ATACA-TAGTTGTAAGGTA--TG--TTTTA-GA-AGA-A-TAAA-TCGAGTT-----TA-TATTCATAAGACAAATTTAT--T-TTTC---AGAAAAGT-AG-CG-TN-TATTG-GCCATC-AAACACC--TATTTA-TTTAGT----TTC-TTT-TTT------AC-----G---CG-TG--CG---AAGTTT--AATAGA--CTTAANNAAAAAAA-AG-CT--CC--ATG-AACTGT----CA-----GTAT---TG-GTAAAAAG---TGC-CGGGA-CCCGCTCT
gi|1 : ACATCCTTCTTT--AATAAAATAA-TGCTATTGT-------------TAAT------------TAAATGA-TTAGAAT-TTACACAGTTATTATT-TATTT--TTTC-A-TA--------------TTGTGG--GAAATCA-ATATA--------TTCAATTGT-------ATATGTAATATACAAT--TTGAAACAA-TTTAAAACATGTATAAATATACATGTATT--AGTAATATTGTAAAGATTTCTGAAAACGATTTTGCCAAGAAAATAT--AACACTGCACTAAC-A-AGTAAATCGTTAACA-TTCTCCCTATACTTTTATTCTGTTTC-TAAAATA--TGCCACTTACTGAATTCTTC-TAAAAAC-T-TCATGTGA-TTTTCGGGTATTTTCTGGT---A------TGCG---AACGGA-CAT-TGAAA-GCATGTCCATACAT------TGAA--TAAAA--AATT-AATGGTTCAACACAATTA-GCGATAG--AAAAAATT--TGATGTTTCAA-TAAAAACATCA---CACAAGGAGCTCCA------CGGGGGTGAAGGCGGGGTGGATTCAGCACCCTGACGTATTCTTTTTACTT-GTGCTTTATTAGCT-AATAAAAAGCAAAT-TGTGT--AATACATTG-TACACGCGTGTAGGAACAA-TTTAG-AAAGGAAAAACGAGAAT-TAT-TA--GA------GAATTTAACGTC--TTT-GGAA-AAAA--AC-AAA----CCTAACTGATCAATTAATTCC------------------CCA-T-ATA----TGCG----C--CACC-TTCTGCTTGATAAAACTGA--CATTACGATCTGTGCGAA---CGTGGGGTTTGTAGGT-CCGAACTATTT-ATTTAATCTGCCTTACTCCGTAAATTCCCA--C--GCCTTTCGAAGGC-TCAAACCTTACAAGGCCCCAAGGA-ACCT---TGCGTTTCACACAAAA--TCAGCTTTC---TTGCTAACTTTCTCGT-CTCAGCATCC-GGTAAATA----ATGCGTAAAGAAATTTT----TGCCCCACATCC---T---GTCAAAGAGAATTCTGTTCCTCGCTTGCATGAT--TGTA--TCTGTGGTGTGAGTTCACCTGCTGGCTGAAAGTTCTCG-CA--TATGAAGCTATATAAA--C-CTCACTACGGTTC--ATACTCTCGCCTTATTTTCCTCGCTAAATCGTACA-TA-TTGTAAGGTATCTGCTTTTTA-AA-AGA-A-TAAA-TCGAGTTGTCTGTA-TATT-ATAATACAAATTTATA-T-TTTC---AGAAAAGTGAG-CG-TT-AATTG-GTCATC-AAAAACCTATATCTA-TTTA------TTC-TTT-TTTCATCTAAC---------CG-TT--CT---AGAT-----ATAGA--CTTAGTCAAAAAAAGAGACTTCCT--ATG-AACTGTTCTGCA-----GTA----TG-GTAAAAAGCGATGCGCGGGATCCCGCTCT
gi|10 : cactggT-AG-CG-TT-TGTTAAGCCAAC-TAGCACC--TCTTGA-TTTAGT----AT--TTT-TAT------AC-----GATGCA-TG--TG---CAGTC---ATTAGA--CT--ACTCAACAAA-AG-CT--CC--ATG-AATTGT----CA-----ATAT---TATGTAAAAAG---TGC-CGGGA-CCCGCTC
gi|11 : aatattgcatcatcctaaatgaatatttcattttctacattTCTG-GGTGTGACGTCAC--GTT-GTTGAAG--TCCCG-TATGTAAG-----ATGAAAT--C-T------CG---C--ATACGTTCGTT-TATTT---CCG-TAAA--ATGCAGTAGCTGTAAGGTA--CG--TTTGA-TG-AAA-A-TAAA-TCG
gi|12 : AGT-AG-CGGTAATATTT-GGCATC-AAACACC--TATTTATTTTAGT----TTC-TTTATTT------TT-----GGATCG-TGGTCG---AAG--T--AA-AGA--CTTAAATCAAAAAA-AG-CT---T--ATG-AACTGT----CA-----GTAT---
gi|13 : A-TCTAAT----TTT-TTG-TAT------ACAATGGG---TG-TG--CA---A---TT--ACTAGT--TTCACTCAACAAAA-AG-CC--CC--TTT-AACTGC----CAATGTTGTAT---TA-AAAAAAAG---TGT-CTTGA-CCCGCTCT
gi|14 : T----TTCGTTT-TTT------AT-----A---CGATG--CGTTTAAAATT--ATTCGA--TTTACTTTAAAA-A-AG-CT--CC--ATG-AACTAT----CA-----ATAT---TG-GTTAAAAG---TCC-TGGGC-CCgt
gi|15 : gtaAATATTAAACCCTG---TCAC-A-G------T-TTCACA-TT-----CCTAGCTTTCTC---TTCC-TAAA--AATTGACACTT-CAGAAGTT-TC-
gi|16 : -GTAAAAAG---TGC-CGGGA-CCCGCTCT
gi|2 : ACAGCCTTCTTGT-GATAATATAAATG-TATTGTAAAAT-AACATATTAATGGGAAAGCCTTTTAAGTGA-TTAGAAT-TTACAC-------ATT-T-TTT--TTTCA--TAAAGGGCCTGGACCTTTATGATTG-AA--A-ATATAAGAAACATATCTATCATATTGGGGAAAGGCAATATATAATCTT-----CGACT----GATATGTA-AA------ATGCATT--A----TATTGT------TGCTG-AAATGATTT-G-CAGGACAATATTAA-CAATG---TCAC-A-GG----TC-TGAACA-TT-----TGTAACTTTATG---T--C-TAAA--A--TGACACTT-CTGAATAC-TC-T--AAACTT-TCATGTGA-TT----GGTATTTTCA-TT---A------TGTGACAAATGCA-TAT-TG-AA-GCATGT-CATACACAATAAATTAA--TGATTTAAGTTTAACA----AAAACAACAACACAATGG--GGAAACAT--TGA-G-TTCAA-TGAAAACA--A---CACAAGGAA----A------AGGGGG----AAGGGGGT--AT--AG-ACCT--ACG-------TCTTCTT-GTGATTTATTAG-T-GATCACATGCAAAT-TGTGT--A------TA-TACACGCGTGTAGT--C----TTAG-AAATAACAAGC--AAAT-TGTGTA--TAT-ACACGCGTGTA--ATCAATTT-AGAAGGAAA--AAGATA----TGTAA---AGCATTTACGTCTTC-GG-AAAA--ACAAA-CCA-CGATA----TTC-----CCCAACCTTTCTG--TG-----ACTG-------------TG---A-A---CGTTGGT-TTGTAGG--CCG-ATTATCG-CTT---------TTACT-CGC-AATTCCCT--C-GGCCTTTCG-AGGC-TCAAACC-TATAAGACAC----GATACCTA--TGCG-TTC--ACAAAA--ATCGCTTTCA--TTG-TAACTTTCTC-T-CTCAGCGATC-GG----TA----ATG-GTAAAG-AATTTT----TA--CCA----T---CACAGTCAAA-AAAAT--CGT---TCGCTGTCATGAT--TGTA-TTCTG-GGTGTGACGTCAC--GAT-GCTGAAG--TATAG-CA--TAGG-----ATATAAA--C-T------CG---C--ATACGTTCGGC-TATTT---CCG-TAAA--GTACA-TCATTGTAAGGTA--TG--TTTTA-GA-AGA-A-TAAA-TCGAGTT-----TA-TATTCATAAGACAA--TTAT--T-TTTC---AGAAAAGT-AG-CG-TA-TATTG-GCCATC-AAACACT--TATTTA-TTAAGTGGGGTTT-TTT-TTT------AC-----G---CG-TG--GG---AAGTTTTGAA-AGA--TTAAAAAAAAAAAA-AG-CT--TC--ATG-ACCTGG----CA-----GTAT---TG-GTAAAAAG---TGC-CGGGA-CCCGCTCTttaa
gi|3 : ttTAACTGA-TTAGAATGTTACAC-------ATT-T-ATTCATTTCAAATA--------------TCGTGG--G-AATAATATATAAACAATATTC--A----AT---GGATATGTAAAATACACT--T-----C-A-T-----AC-TGTA-TA------GTA-ATTTTAG---ACTTG--------GCTG-AAACGATTTTGGCAAGAAAATATTACACACTG---TCAC-AAGG----TC-TTTACA-TT-----TGTAACCTTTTC---TTTCCTAAA--A--TGACACTT-CTGAATTC-TCGT--AAACGTGTCATGTGAATT----GGTATTTCTT-TTCTTA------TGCGACGAATGGA-CATCTG-AAAGCAT-C-CA---ACA-----TGAAGATAATT--A-------------AAGT--CAACACAG-GG--AAAAAAATCTTGA-G-TTCAAATAAAAACA--A---CACAA-GAG----A------GTGGGG----GGGGGGGTA-AT--AG-ACCT--ACG---------TACTT-GT-ATTTATTA--T-AATAACAAGCAAATCTGTGT--A------TATTCCGCGCGTGTATA--CAATTTTAG-AAGGAAAAAAA--AAA
gi|3 : c-TACGTACTTGTATT--TA---TTAT-AA-TAACAAGC--AAATCTGTGTA--TATTCCGCGCGTGTA--TACAATTTTAGAAGGAAA--AA-AAAAAGATGTAA---AGCATT-ACTCTTTT-GGCAAAATCATAAA-CCA-CGATA----TTATTCCACCCCACCTT-CTG--TG-----ACTGA--CATTACGATCTAC-GG-AGACCGTTGGG-TTGTAAGGCCCGAATCATCG-CTT---------TTACTCCGT-AATTCCCC--CAGGC--TTCG-AGGC-TCAAACC-TATAAG-CCC----GA-ACCTA--TGCG-TTCA-ACAAAA--AT-GCGTTCAAATTG-TAACTT-CTC-TTCTCAGCGATCCGG----TA----ATG--TAAAA-AATTTT----TG--CCA----CACCT---GTCAAA-AGAAT--CGT---TCGCTGTCATGATATTGTACTTCTG-GGTGTGACTCCA---GCT-GT--AAG--TCTCG-CAA-TAG--------ATAAA--C-T------CT---CCAATACGTTCGGC-TATT----CCG-TAAA---TG-A-TAGTTGTAAGGTA--TG--TCTTATAA-AGA-AATAAA-TCGAGTT-----AAATATT-ATATTACAAATTTAT--T-TTTTTCTAGAAAAGT-AGGCG-TT-TATTG-GCCATCTAAACACC--TATTTA-TTTAGT----TTT-TAT-TTG------AT-----G---CG-TG--TG---AAGTTA--TACAGA--CTTAATCAAACAAA-AG-CT--TCAAATG-CACTGT----CA-----GTATCTGTA-GTAAAAAG---TGC-CGGGA-CCCGCTgatgtaaagcattactcttttggcaaaatcataaaccacgatattattccaccccaccttctgtgactgacattacgatctacggagaccgttgggttgtaaggcccgaatcatcgcttttactccgtaattcccccaggcttcgaggctcaaacctataagcccgaacctatgcgttcaacaaaaatgcgttcaaattgtaacttctcttctcagcgatccggtaatgtaaaaaatttttgccacacctgtcaaaagaatcgttcgctgtcatgatattgtacttctgggtgtgactccagctgtaagtctcgcaatagataaactctccaatacgttcggctattccgtaaatgatagttgtaaggtatgtcttataaagaaataaatcgagttaaatattatattacaaatttatttttttctagaaaagtaggcgtttattggccatctaaacacctatttatttagtttttatttgatgcgtgtgaagttatacagacttaatcaaacaaaagcttcaaatgcactgtcagtatctgtagtaaaaagtgccgggacccgct
gi|4 : ctaactgattagaatgttacacatttattcatttcaaatatcgtgggaataatatataaacaatattcaatggatatgtaaaatacacttcatactgtatagtaattttagacttggctgaaacgattttggcaagaaaatattacacactgtcacaaggtctttacatttgtaaccttttctttcctaaaatgacacttctgaattctcgtaaacgtgtcatgtgaattggtatttcttttcttatgcgacgaatggacatctgaaagcatccaacatgaagataattaaagtcaacacagggaaaaaaatcttgagttcaaataaaaacaacacaagagagtgggggggggggtaatagaccACATCCTTCTTTTTAATAAAATAAATG-TATTGTAAA-TTA-CGTATTAATGGAAAAGCTTTTTAAAAGAATTAGAAT-TTACAC-------GTTAT-TTTA-TTTCAA-TA--------------TTGTGG--G-AATCA-ATATAATTAATATTCCAAT---------GATATGTAAAATACAGT--T-------A-T-----ACATGTA-------------ATT--AG---TA---TAA----TTTTA-GA-----TTTG-CAGGAAAATATTAACAACTG---TCACAA-GG----TC-TTTACATTT-----TGTAACTTTATC---TTTC--AAA--A--TGACACTT-CTGAATTC-TC-T--AAACTT-TCATGTGA-TT----GGTATTTTCT-TT---A------TGCGATAAATGTAGCAT-TG-AA-GCATGC-CAT--ACA-----TGAT--AAATTA-AGTT----------------CAACACAATGGAAAAAAAAAT--TGA-G-TTCAA-TAAAAACA--ATACCACAAGGAG----AATGGGGAGGGGG----GGGGGGGT--AT--AG-ACCT--ACGT------TCTACTTGGTGATGTATTAG-TAAATAACAAGCAAA--TATGT--AT-----TA-TACATGCGTGTAGA--CAA-TTTAG-AAGGGAAAAAA--AGAT-TGT
gi|4 : ctgTTAGTAAATAACAAGC--AAATATGTAT---TAT-ACATGCGTGTA--GACAATTT-AGAAGGGAA--AA-AAAGAT-TGTAA---AGCATTTACGTCTTTTGG-AAAA--ACAAAACCATCGATAATTATTCC----CCCCACCTT-CTG--TGG----ACTGA--CATTACGATCTGT-GG-A---CGTTGGG-TT-TAGG--CCCGATTATCGGCTTAAA------TTACTC-GC-AATTCCCCTTC-GGCCTTTCG-AGGCCTCAAACC-TATAAGGCCC----GATACCTA--TGCG-TTTA-ACGAAACCGTTGCTTTCAT-TTG-TAACTTTCTaaagcatttacgtcttttggaaaaacaaaaccatcgataattattccccccaccttctgtggactgacattacgatctgtggacgttgggtttaggcccgattatcggcttaaattactcgcaattccccttcggcctttcgaggcctcaaacctataaggcccgatacctatgcgtttaacgaaaccgttgctttcatttgtaactttcttc
gi|5 : ctgacatccttctttttaataaaataaatgtattgtaaattacgtattaatggaaaagctttttaaaagaattagaatttacacgttattttatttcaatattgtgggaatcaatataattaatattccaatgatatgtaaaatacagttatacatgtaattagtataattttagatttgcaggaaaatattaacaactgtcacaaggtctttacattttgtaactttatctttcaaaatgacacttctgaattctctaaactttcatgtgattggtattttctttatgcgataaatgtagcattgaagcatgccatacatgataaattaagttcaacacaatggaaaaaaaaattgagttcaataaaaacaataccacaaggagaatggggaggggggggggggtatagacctacgttctacttggtgatgtaCTACTT-CTGATTTATTCG-T--ATAGCAAGCAAAA-TGAGTACA------TA-TACATGCATGTTGT--CAA-ATTAG---ATAAAAATC--AAtc
gi|5 : ATAGCAAGC--AAAA-TGAGTACATAT-ACATGCATGTT--GTCAAATT-AGATAAAAATCAATACA----TTTAA---AGTATTTACGTCTAT-GG-AAAA--ATATC-CCA-CGACA----TTCT----CCTCTTCTTTCTG--CG-----GCTGATGCATTG-----TAT-T--A---CGTTG-----------------TTATCA-ATT---------CCACTA----AGTTTCCC--C-TGACTTT-G-GGGT-TCAAACC-TGTAAGGTCG----GATATTTAAATGCA-TTCA--CAAAA--TTCACTTTCA--TTA-TA-CTTT-TC-T-CTCCGTAATC-AG----TA----ATG-GTCAAA-AACCTTGTTGTG--TCA----C---T---GTCAAA-AGAAC--GGT---CCACAGTTGTGCT--TGTG-TTCTA-GGTGTGTCGCAAT--ACT-GTTAAAG--TCTCG-CATGTGGG-----ATG-AAA--TAT------CG---C--ACATGTTTGAC-CATTT---CCA-TAAA--ATATA-AAGTTATACGGTA--CG-----AA-GAGAAA-A-AAAA-TC----C-----TA--ACTC--AAG-CATTTTTTT--T-TTTC---AAAAATGT-Atacatttaaagtatttacgtctatggaaaaatatcccacgacattctcctcttctttctgcggctgatgcattgtattacgttgttatcaattccactaagtttcccctgactttggggttcaaacctgtaaggtcggatatttaaatgcattcacaaaattcactttcattatacttttctctccgtaatcagtaatggtcaaaaaccttgttgtgtcactgtcaaaagaacggtccacagttgtgcttgtgttctaggtgtgtcgcaatactgttaaagtctcgcatgtgggatgaaatatcgcacatgtttgaccatttccataaaatataaagttatacggtacgaagagaaaaaaaatcctaactcaagcatttttttttttcaaaaatgtacattactaacaaagatacactta
gi|6 : ctacttctgatttattcgt-TTTACA-TT-----TGTAACTTTATC---TTTC-TAAA--A--TAACACTT-TTGAATTC-TC-T--AAACTT-TCATGTGA-TT----GTTATTTTTT-TT---AAGTTTATGTGACAAATGTA-CAT-TG-AA-ACATGT-CATACA-------TGAA--TAATTTTAGTTTAACA----AAAACAACTACACAATGG--AAAAAAAAA-TGA-T-TTCAA-TAAAAGCA--A---CACAAGGTG----A-----------------GGGGGGT--AT--AG-ACCT--ATG-------TCTAATT-GTGGTTTATTAG-T-AATAACAAGCACAT-TATGT--A------TA-TACACGCATGTAGT--CAA-TTTAG-AAcattactaacaaagatacactta
gi|6 : TGTGGT--TTA-TT-AG-TAATAACAAGC--ACAT-TATGTA--TAT-ACACGCATGTA--GTCAATTT-AGAAGGGGG--AA-ATA----TGTAA---TGCATTTACGTCTTT-GA-AAAA--ACAAA-CCA-TGATA----TTCT----CCCCACCTTTCTA--TA-----ACTGA--CATTACGATCTGT-TG-A---CGTTGGG-TTGTAgggggaaatatgtaatgcatttacgtctttgaaaaaacaaaccatgatattctccccacctttctataactgacattacgatctgttgacgttgggttgta
gi|7 : tttacatttgtaactttatctttctaaaataacacttttgaattctctaaactttcatgtgattgttattttttttaagtttatgtgacaaatgtacattgaaacatgtcatacatgaataattttagtttaacaaaaacaactacacaatggaaaaaaaaatgatttcaataaaagcaacacaaggtgaggggggtatagacctatgtctaatACTTTTTC-T-CTCAGCGATC-GG----TAATGCATG-GTAAAG-AATTTT----TA--TCA----C---------------------CAT---TCGCTGTCATGAT--TATG-TTCTG-AGTGTGACGTCAC--ACT-TTTAAAG--TCTCGATA--TAGG-----ATATAAACTC-T------CG---C--ATACGTTCGGC-TATTT---CCG-TAAA--GTACA-TACTAGTA--GT---TG--T----------A-A-TAAA-TCGAGTT-----TA-TATTCATAAGACAAATCTATTAT-CTTC---AGAAAGGT-AA-CG-TA-TATTG-GC
gi|8 : TT---CCG-CAGA--ACA-A-GAGTTGTAAGGTA--TG--TTTTA-GA-AGAGA-TAAAATCGAGTT------A-TCTTCATAGGACACATT-AT--TATTTC---AGAAAAG--AG-CG-TA-TATTT-GCCATC-AA-CACC--TATTT--TTCGAT----T---------------------------CG-TG---G---AAGT----AATAGAACTTTATTAAAAAAAA-AG-CT--TCG-ATGAAACTGT----CA-----GTAT---GG-TTTTAAAC---TG--CGGGA-CCC
gi|9 : tcggctcgttcccgtaaatcca----TACTC-ACACAATTT-G-TAGGAAAATATTAAATACTG---TAAC-A-GT----TC---AGCA-TT-----TGTAACTTTATC---TTTA-TGAA------------T-C--AATT------------TG-TCA---GA-TA----GGTATTTTCT-TT---AAG----AGTGACAAATGCA------------CATGT-CATA-A-A-----TGAA--AAATTG-AATTGAACA----AAAGCAACCAa
gi|9 : ttatcattAATG-----AAAAAT--TGA-A-TTGAA-CAAAAGCA--A---C-CAAGGAG------------GGGGG----AGGGGGGT--aggaggggggaggggggtcacattcagttg