lowQualScore : 11111111111111 111111111111111111111111 111111111111111111111111111111111111111111111111111111 1111111111111111
lowQualScore : 33333333333333 33333 1 1111 2 3333333 1 000000000000000000000000 1111 1 1 77777777777777777777777777777 1 6666666 1 444444444 222 333 2222 2 222 2 11 88888888 2 2 1 2 22 2222 2 1 44444444 1 1 1 111 1 1 6666666666666666666666 1 1 1 2 2 111 1 1 2 11 1 33333333333333 1 6666666666666666 22222 1 11 1 1 1 11 33333333333333333 444444444 1 11 777777777777777777777777777777777777777777777777777777 11 1111111111111111 333333 1 11 2222222222222222 22222222 333333 1 11 1 1 2
lowQualScore : 7 99 55555555555555 6 55555 8 0 9999 8 6 1 5555555 0 1 444444444444444444444444 7777 1 6 8 8 6 88888888888888888888888888888 6 3 0000000 7 3 3 000000000 222 6 555 1111 0 999 0 88 44444444 0 0 5 0 77 2 1111 0 3 6 33333333 0 0 0 666 0 0 2 5555555555555555555555 0 0 0 3 1 0 3 7 666 0 0 66 2 33 0 0 2 66666666666666 0 0 3333333333333333 55555 0 2 33 0 0 55 0 0 0 6 0 2 33 0 3 55555555555555555 0 3 333333333 0 777 11 000000000000000000000000000000000000000000000000000000 7 7 88 8888888888888888 7 888888 3 2 88 1 4 0000000000000000 7 7 66666666 7 444444 3 99 6 7 3 6 3
lowQualScore : . .. .............. . ..... . . .... . . . ....... . . ........................ .... . . . . . ............................. . . ....... . . . ......... ... . ... .... . ... . .. ........ . . . . .. . .... . . . ........ . . . ... . . . ...................... . . . . . . . . ... . . .. . .. . . . .............. . . ................ ..... . . .. . . .. . . . . . . .. . . ................. . . ......... . ... .. ...................................................... . . .. ................ . ...... . . .. . . ................ . . ........ . ...... . .. . . . . .
lowQualScore : 3 22 00000000000000 0 00000 0 6 0000 0 2 8 2222222 0 4 000000000000000000000000 0000 4 0 0 8 7 77777777777777777777777777777 7 3 0000000 3 3 7 333333333 000 0 000 0000 0 555 0 00 55555555 0 0 0 0 55 5 0000 0 3 7 00000000 0 0 0 888 0 0 5 0000000000000000000000 0 0 0 2 5 0 2 0 555 0 0 88 8 88 0 2 2 88888888888888 0 2 0000000000000000 00000 0 5 88 0 0 88 8 8 0 5 2 5 88 2 2 22222222222222222 2 2 222222222 0 777 00 333333333333333333333333333333333333333333333333333333 3 3 33 7777777777777777 3 333333 7 3 33 0 7 2222222222222222 3 3 77777777 3 333333 3 33 0 0 3 7 7
consensus : GTTCCATTGTCAAAA--TATGTACAACAATGGTTGACAAAA-TCTTCAAGCTTACTCGATCTGCTTGTGA-GCAATCAA--CTGAAC-TAAAATGAGGAGGA----CAAAAACTCGTTACC------CACCCC-CCTCTACATTNTTTA----AGATTTCGAAGTATCGAGTAAAA-A-TTCTAGTTTTTTGTGCTCTTT-GCCCCC----CCCCCCCCTTTC--CACACTTTCCAGG-ATGTTGAAG---TTTAGC-CTTANTTAGA-----TATTAAATTTCT--NTTATATTTTGCCTGCCCTGTCCGCAGTATTACTGGACAATTGGTAAACTCAACTT---TTCTCATAAGGACTAGCGCCCCCCACCCACCTATCACTTTNGAAAACACGTAAGTACATTGTAC-GCGACCG--C-TTGT-CAA-TTCACCAA-TAN-ATGAT-CAA-CCATTCA-TGAA-G--ATATGCCATGTAACAG-C-AG-ATATTT-GTCTG-GCAAAGAAAATTATT-AC-TGC-ATGTACTTCGTTTT--CAGTTT-ATGCCTTCAATTACAAA-AATATGTA-TCTCTN----TTA-C------TAAA-----TGT-AAATGCGGGCTGACT--AAGAC-AAGAGCAGCT-TTGATTTCTTTCTGTCGACC-AATACCACGACAA--AAGGTATTCAAATAT-TGTACATGTAGATGAGTTATATA----TATAAACTCACA-AACATCTGCAAAGTNA--TGTACTGTG-------G-------------------TTCTAC---------------------AAAATAATCACGGAGTTTATAA--ACTTGGAAAAATCTA-ATTAA-GCA-TTTTCAGTTTCTTG------TACTTATGATTTTTNTTTTACTT--TCTNAAGTAC-----CATG-AC--ATGTAATTCTAAACT--GCT---ACACTTGATTTAAAGA-TTTCAGG-AACAA-GAGAAGGTCCTATAA-CGGTTCCGTAAGATACGTC-TTTGTAATGA
Reference ( gi|2 ) : GTTCCATTGTCAAAA--TATGTACAACA--------------TCTTCAAGCTTACTCAATCT--T--TGA-GCAATCTA--CTGAAC-TATAATGAGAATAA----CAAAAACTCGTTACC------C------CCT-TACA--ATTTA----AGATTTCAAAGT-TCGAGTAAAG-ATTTCTAGTGTTTTGTGCTCTTTTGCCCCCCCCCCCCCCCCCCTTC--CACACTTTCCAGG-ATGTT---G---TTTAGC-CTTACTTAGA-----TATCAAATTTCT--CTTGTATTTT---TGCCC-GT-CG-AGTATTATTGGACAATT-GTAAACTCAACTTGACTTCTCATAA-GACT-GCACCCC-CACCCACC--TCACTTTGAAAAACA-GT-AGTACA-TGTAC-GCGACTG--CTTTGT-CAA-TTCACCAA-TAA-ATGAT-CAA-CCATTCA-TGAA-GGTATATACCATGTAACAG-C-AG-ATATTTTGTCTG-GCAAAGAAAATTATT-AC-TGC-ATGTACTTCGTATT--CAGTTT-ATGCTTTAAATTACAAACAATATGTA-TCTCTG----TTA--------TAAA-----TGT-AAATGCGGGCTGACT--AAGAC-AAGAGCAGCT-TTGATTTCTTTCTGTTGACC-AATACCACGACAA--AAGGTATTCAAATAT-TATACATGTAGATAAGTTATATA----TATACACTCACA-AACATCTGCAAAATTA--TGTACTGTG-------A-------------------TTCTAC---------------------AAAATAATCACGGAGTTTATAA--ACTTGGAAAAATCTAGATTAAAACA-TTTTCAGTTTCTTG------TACTTATGATTTTTCTTTTATTT--TTTTAAGTACATGTACATGTAC--ATGTAATTCTAAACT--GCT---ACACTTGATTTAAAGATTTTCAGG-AACAA-AAGAAGGCCCTTTAA-CGGTTCCGTAAGATACGTCTTTTGTAATGA
gi|3 : GTTCCATTGTCAAAACATATGTCAAACA--------------TCTTCAAGCTTACTCGATCT--T--TGA-GCAATCAA--CTGAAC-AA-AATGAGAA-GG----CAAAAACTCGTTACC------CACTCC-CCT-T-CA---TTTA----AGATTTCAAAGT-TCGAGTAAAG-ATCTCGAGTGTTTTGTGCTCTTT-GCCCCC-------------------ACACTTTCCAGG-ATGTT---GAAGTTTAGC-CTTAGTTAGA-----TA-AAAATTTCT--CTTATATTTTGCCTGTCCTGT-CG-AGTATTAT-GGACAATT-GTAAACTCAACTT-----TTCATAA-GACT-GCACCCCCCACCCACC--TCACTTTGAAAAACA-GT-AGTACA-TGTAC-GCGACCGTACAATGT-CAA-TTCACCAA-TAT-ATGAT-CAA-CCATT------------------------CAA-C-AG-ATA-TTTGTCTG-GAAAAGAAAATTATT-AC-TGC-ATGTACTTCATTTT--CAGTTT-ATGCCTTCAATTACAAAAAATATGTA-TCTAT-----TTA--------TAAA-----TGT-AAATGCGGGCTGATT--ACGAC-AAGAGCAGAT-TTGATT------------CA-AATA----------------ATT---ATATATGTAGATG-AGTTAAAT-----------ATAAACTTACA-AACATCTGTAAAGTAA--TGTACTGTG-------GTGATTTATTTTACATGTATTTCTAC---------------------AAA--AATC---GAGTTTATAA--ACTTGGAAAAATCTATATTAATACA-TTTTCAGTATATTGTAACGTTACTTATCATTTTTCTTTTA-TT--TCTAAAGT------------AC--ATGTAATTCTAAACT--GCT---ACACTTGATTTAAAGA-TTTCAGG-AACAA-GAGATGGTCCTATAA-CGGTTCCGTAAGATACGTC-TTTGTAATG
gi|4 : tttatattgaaaatttaaaacgaaaattGTTCC-TTGTCAAAA--TATGTACAGCAATGGTTGACAAAA-TCTTCAAGCTTACTCGATCTGCTTGTGA-GC-ATCAA--CTGAGC-TAAAATGAAGAGGA----CAAAAACT--TTTCC------CATCT--CCTCTAGATTTTTTA----AAATTTTGAAGTATCGAGTAAAA-A-TTCTAGT
gi|5 : taGTTCCATTGTCAAAA--TATGTACAACAATGGTTTGACAAAATCTTCAAGCTTATTCGATCT--T--TGA-GCAATCAA--TTGAAC-TAATATGAGAAGGA----CAAACACTCGTTACC------CACTCCCCCT-TACG--ATTGA----AGACTTCGAAGT-TCGAGCAAAA-ACTTCTAGTTTTTTGTGCACTTTTGCCCCCCACCCCTCCCTTTTTCCACACACTTTCCAGG-ATGTTGAAG---TTTAGC-CTTATTTAGA-----TATTAAATTTCT--ATTttactgcgactttgtcaattaaccaataatgatcaaaccattcataatgataccattaaacagcagatatttgtctttgcagaaaattatttactgccatgtacttcgttttatcagtttatgcctcaattacaaaaaatgtatctctgttaacattttctaaatgtaaatgggactgacttaaagacaagagcagctttgatttctttctgttgaccaataccacgacaaaaggtattcaaatattatacatgtagatgagttatatataaattcacaaacatctgcaaagtaatgtactgtgatgatttattttacatggtttacatgtatttctacaaaataatcacggagtttataaacttggaaaaattttcagtttcttgtactaatgatttttgtaacacttgatttcaagaacaagagaaggtcctatgacggttccgtaagatacgtcttt
gi|6 : aaaaaattaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctatgaaaacgttaaggggttgttctttctaaaatttaaacataaaacccccaaattgcatgatttttttatgataaccaatacgtaagaaattcattcgtcgtaaaaatggcaagaaatatgaaaaggttattcaacaaaagtactgatGTTCC-TTGTCAAAA--TATGTACAGCAATGGTTGACAAAA-TCTTCAAGCTTACTCGATCTGCTTGTGA-GC-ATCAA--CTGAGC-TAAAATGAAGAGGA----CAAAAACT--TTTCC------CATCT--CCTCTAGATTTTTTA----AAATTTTGAAGTATCGAGTAAAA-A-TTCTAGTctttt
gi|8 : tacgaaagccagctgagctcatttttgaaaaaaataaaaataaaattaactcgttataacgattacttatctcgttattaaacgagttatatctcgataaacgagttagggtatatgagaacgttaaggccttttctctcaaaattcaaacagaacattttgaatttttgagccacaattactgttttttttataacaattacgtaaaatttattgtcgtaacaaatgactagaaaattctcaaagaaatgaataaggtgacatcttatttcttttattcaacaaaaagttatgaataGTTCCATTGTCAAAA--TATGTACAttactgcgactt
gi|1 : annnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaaacggtaagggttcttctcttcaaacttcaaacagaacaatttgaaattcgtcgtacaatggctagaaaatgttattttctacatgtagctccaaagaaatgaaaaggtgacgatctatttcttttattcaacaaaagtactagatattTCCATTGTCAAAA--TATGTAAAACA--------------TCTTTCAGACTACTCGATCT--T--TGAGGAAATCAAATCTGAACATA-AATGAGCATGGACTTCAAAAA-TCGTTACCCACTCTC------CCTATACA--ATTTACACGATATTTCAAA-T-TAAGGTAAAGTAATTCTAGTTTTTGGTGCT---------------CCCCCCCCTTTC--CA-ACTTTCCAGGAATGCTGAAG---TTT-GCACTTACTTAGATTTTTTTTTAATTTTCTTCTTTATATTTT---TGCCT-GTCCGCAGTATT-CTGGACAATTGGTAA--TCAA------TTCTCATAAGGACTAGCG-CCC-CACCCACCTATCACTTTTGAAAATACGTAAATACATTGTAC-G-G--CG--TTTTGTACAATTTCACAAATTAATATGAT-CAA-CCATTCATTGAACAGTATAGGCCATGTAACAG-CGAGCATATTTGCTCTGAGCAAAGAATGTTA-T-ACTTGC-ATGTACTTTGT-TT--CTGTTT-ATCCCTTCAAATACAAAC--TATGTAGTCTTCATAGTTTATT------TAAA-----TGTAAAATGCGGGCTGACT--AAGACAAAGAGCCGCTATTGACTTCTTTCTGTCGACCAAATACCACGACAAATAAGGTA-TCA---------AC-TGTAGATGAGTTATATA----TA-A-ACTCACACAACATCTGCAATAGTAGCTGTACTGTG-------A-------------------T
gi|4 : taaggcgttttacctcttcccaaattcaacagacaccaatttgaaattcttgaatgttcccccaaattcacatgattttttttatgattcacgatttaaaatggctagaaatgttattttccagcttcaaagaaatgcaaaagatttaaggtgacgatcgttttcttacttatattcaacaaagtactgaatagtgtaaTACTGCGACT-----TTGT-CAA-TTAACCAA-TAA--TGAT-CAAACCATTCA-TAAT-G----ATACCATTAAACAG-C-AG-ATATTT-GTCTTTGCA--GAAAATTATTTAC-TGCCATGTACTTCGTTTTATCAGTTT-ATGCCTCAA-TTACAAA-AA-ATGTA-TCTCTG----TTAACATTTTCTAAA-----TGT-AAATG-GGACTGACTTAAAGAC-AAGAGCAGCT-TTGATTTCTTTCTGTTGACC-AATACCACGACAA--AAGGTATTCAAATAT-TATACATGTAGATGAGTTATATA----TA-A-ATTCACA-AACATCTGCAAAGTAA--TGTACTGTGATGATTTA-------------------TTTTACATGGTTTACATGTATTTCTACAAAATAATCACGGAGTTTATAA--ACTTGGAAAA--------------A-TTTTCAGTTTCTTG------TACTAATGATTTTTGTAACACTTGATTTCAAGAACAgattatattttcaatggtttatatgtatcgtgtcgacaaaatatccacgggttttacaactgcttggaaaaatctagattaaagcatttttcagttctggtacttatgattttttttttatttccttaagtatcatggtaattctaaacttagcttacatatttgattaaagatttcaggaaacaatgagaaggtcctataattggttccgtaagatagtcttgtaatgatttag
gi|7 : tagttccttgtcaaaatatgtacagcaatggttgacaaaatcttcaagcttactcgatctgcttgtgagcatcaactgagctaaaatgaagaggacaaaaacttttcccatctcctctagattttttaaaattttgaagtatcgagtaaaaattctagttGT-CAA-TCCATCAA-GAC-ATGATGCAG-TGTTTCA-TGAA-G--ATATGCCA-GTGGCAGGC-AG-ATATTT-GTATG-GCAAAAAAA--TAT--AC-GAG-ATGTAATT--TTTT--TAATTTCATACTCT-------------TATGTA-TTTCTT----TTC--------TAAGACTAGTGC-AGGTGCAGGCTGACC--TAGCT-AAAAGCAGCA-TGAATTTATTTCTGTTGGCC-ACTATCACAAAAA--AAAGTATCGAAATAT-T-T-----CAAATAATTTATATACATGTATAAACTTACA-ACCATCTGTAAACTGA--TGAACTTTG-------G-------------------Tagagaaggtcctatgacggttccgtaagatacgtcttt
gi|1 : acaaacacacaatccaggatgatgaaTA--TGTATCGTG----------------------------TCGAC---------------------AAAATATCCACGGGTTTTACAACTGCTTGGAAAAATCTAGATTAAAGCATTTTTCAG-TTCTGG------TACTTATGATTTTTTTTTTATTT--CCTTAAGTAT-----CATG-------GTAATTCTAAACTTAGCTTACATATTTGA-TTAAAGA-TTTCAGGAAACAATGAGAAGGTCCTATAATTGGTTCCGTAAGATA-GTC--TTGTAATGAgcattatatttttataaagtgtacatat
gi|4 : taaggcgttttacctcttcccaaattcaacagacaccaatttgaaattcttgaatgttcccccaaattcacatgattttttttatgattcacgatttaaaatggctagaaatgttattttccagcttcaaagaaatgcaaaagatttaaggtgacgatcgttttcttacttatattcaacaaagtactgaatagtgtaatccattgtcaaaatatgtaaaacatctttcagactactcgatctttgaggaaatcaaatctgaacataaatgagcatggacttcaaaaatcgttacccactctccctatacaatttacacgatatttcaaattaaggtaaagtaattctagtttttggtgctcccccccctttccaactttccaggaatgctgaagtttgcacttacttagatttttttttaattttcttctttatatttttgcctgtccgcagtattctggacaattggtaatcaattctcataaggactagcgccccacccacctatcacttttgaaaatacgtaaatacattgtacggcgttttgtacaatttcacaaattaatatgatcaaccattcattgaacagtataggccatgtaacagcgagcatatttgctctgagcaaagaatgttatacttgcatgtactttgtttctgtttatcccttcaaatacaaactatgtagtcttcatagtttatttaaatgtaaaatgcgggctgactaagacaaagagccgctattgacttctttctgtcgaccaaataccacgacaaataaggtatcaactgtagatgagttatatataaactcacacaacatctgcaatagtagctgtactgtgatgattatattttcaatggtttaTGTACTAATG--ATTTT----T--GTA---ACACTTGATTT---------CAAG-AACAA-GAGAAGGTCCTATGA-CGGTTCCGTAAGATACGTCTTTtttag
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): GAAAAACATTAAGGGGGTTTTCTCTTAAAATTTAAACAGAATAATTTGAAATAAATTACGTGATTTTTTTTATGAAAACGATTACGTAAGAAATTTTATTCGTCGTAAAACTGGTTAGAAAATGTTATTTTCCAGCTCCAAAGAAATGAAAAGGTGACGATCTATTTCTTTTATTCAACAAAGT
Unaligned ( gi|10 ): TACGAAAGCTGGCTGGGCTCATTTTTTGAAAAATAAAAAAAAAATACCTCGTTATAATGAGTTAGTATATCTCGTTATAACGAGTTAGT
Unaligned ( gi|11 ): ATGCGTCGTAAAAATGACAAAAACTGTTATTTTTGAGCTCCTAACAATTGAATAAGTGACGAT
Unaligned ( gi|12 ): GTACGAAAGCCAACTGGGCTCATTTTGGAAAAAAATAAATAACTAGTTAGTAAA
Unaligned ( gi|13 ): TACGAAAGCTGGCTGGGCTCATTTTTGGAAAAATAAAA
Unaligned ( gi|14 ): AAGTTGGCTGGGTTCATTTTTGTTTTAAAAAAAAAAAA
Unaligned ( gi|15 ): GTACGAAAGGCGGCTGAGCTCATTTTCGAAAAAAA
Unaligned ( gi|16 ): TACGAAAGCCGTCTGAGCTCATTTTTGAAAAAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333333333 33333 111 1111 22222222 1111 1 1 3333333333333333333333 1 1 2222222 111 333 11 2222 11 11 222222 11 2 22 22 2 11 11 1 33333333 11 22222222222 1 11 11 666666666666666666666 11 11 22222222 111 1111 222222222222222222222222222222222222222222222222222222 11 444444444 1 222222 1 11 555555555555 11 111 1 1 1 1 11
lowQualScore : 5 55555555555555 99999 7 99 3 2 6 111 6 9999 55555555 4444 5 99 6 6 6 6 0 6 7777777777777777777777 2 0 3 3 0 1 9999999 444 666 44 6666 99 33 7 888888 7 33 3 0 11 22 11 3 44 44 0 2 3 77777777 8 8 8 11 8 8 8 8 77777777777 666 8 8 8 8 8 6 0 3 999 8 8 3 0 11 8 55 1 33 8 11 8 666666666666666666666 0 8 11 8 8 0 4 8 3 11 0 666 77777777 222 0 7777 8 8 1 6 222222222222222222222222222222222222222222222222222222 3 3 33 3 999999999 0 3 888888 1 1 11 11 0 000000000000 3 3 33 777 66 0 0 0 0 2 33
lowQualScore : . .............. ..... . .. . . . ... . .... ........ .... . .. . . . . . . ...................... . . . . . . ....... ... ... .. .... .. .. . ...... . .. . . .. .. .. . .. .. . . . ........ . . . .. . . . . ........... ... . . . . . . . . ... . . . . .. . .. . .. . .. . ..................... . . .. . . . . . . .. . ... ........ ... . .... . . . . ...................................................... . . .. . ......... . . ...... . . .. .. . ............ . . .. ... .. . . . . . ..
lowQualScore : 0 55555555555555 00000 3 22 5 2 7 777 7 2222 55555555 2222 5 22 7 7 7 0 8 0 8888888888888888888888 5 0 2 2 0 0 5555555 888 777 00 7777 33 33 3 000000 3 33 7 7 77 77 77 3 77 77 0 5 2 55555555 0 0 0 00 8 0 0 0 00000000000 666 0 0 0 0 0 0 8 8 666 0 0 2 8 00 0 88 0 66 0 44 0 000000000000000000000 8 0 00 0 0 8 6 0 2 00 8 444 88888888 000 8 0000 0 0 0 7 777777777777777777777777777777777777777777777777777777 2 2 88 2 222222222 0 2 888888 0 4 00 88 8 888888888888 2 2 88 555 55 0 0 0 0 5 22
consensus : GTTCCATTGTCAAAATATGTACAACAATGGTT-GACAAA-ATCTTCAAGCTTACTCGATCT--TTGTGAGCAATCAA--CTGAACTAAAATGAGAA-GGAC---AAAAACTCGTTACCCACTC-CCCTCTACATTATTTA----AGATTTCGAAGTATCGAGTAAA--AA-T-T-CTAGTTTTTTGTGCTCTTTTGCCCCCC--CCCCCCCT----TTC----CACACTTTCCAGGA-TGTTGAAGTTTAGC-CTTACTTAGATATT-----AAATTTCTC--TTATATTTT---TGCCCTGTCCG-AGTATTACTGGACAATTGGTAAACTCAACTT---TTCTCATAAGGACT-GCGCCCCC-ACCCACCT-TCACTTTGAAAAACA-GTAAGTACATTGTAC-GCGACCG-CT----T-GT-CAA-TTCACCAAT--ATATGAT-CAA-CCATTCA-TGA--AG--ATATGCCATGTAACAG-C-AG-ATATTT-G-TCTG-GCAAAGAAAATTATT-AC-TGC-ATGTACTTCGTTTT--CAGTTT-ATGCCTTCAATTAC-AAA-AATATGTA-TCTCT----NTT-----A-------CTAAATGT-AAATGCGGGCTGACT--AAGAC-AAGAGCAGCT-TTGATTTCTTTCTGTTGACC-AATACCACGACAA--AAGGTATTCAAATAT-TATACATGTAGATGAGTTATATA----TATAAACTCACA-AACATCTGCAA-AGTAA-TGTACTGTG-------A-------------------TTCTAC---------------------AAAATAATCACGGAGTTTATAA--ACTTGGAAAAATCTAGATT-AA-ACATTTT-CAGTTTCTTG------TACTTATGATTTTTCTTTTATTT--TCTTAAGTAC-----CATG-ACATGTAATTCTAAACT--GCT---ACACTTGATTTAAAGA-TTTCAGG-AACAA-GAGAAGGTCCTATAA-CGGTTCCGTAAGATACGTC-TTTGTAATGA
Reference ( family-6165 ) : GTTCCATTGTCAAAATATGTACAACAATGGTT-GACAAA-ATCTTCAAGCTTACTCGATCTGCTTGTGAGCAATCAA--CTGAACTAAAATGAGGA-GGAC---AAAAACTCGTTACCCACCC-CCCTCTACATTNTTTA----AGATTTCGAAGTATCGAGTAAA--AA-T-T-CTAGTTTTTTGTGCTCTTT-GCCCCCC--CCCCCCCT----TTC----CACACTTTCCAGGA-TGTTGAAGTTTAGC-CTTANTTAGATATT-----AAATTTCTN--TTATATTTTGCCTGCCCTGTCCGCAGTATTACTGGACAATTGGTAAACTCAACTT---TTCTCATAAGGACTAGCGCCCCCCACCCACCTATCACTTTNGAAAACACGTAAGTACATTGTAC-GCGACCG-CT----T-GT-CAA-TTCACCAAT--ANATGAT-CAA-CCATTCA-TGA--AG--ATATGCCATGTAACAG-C-AG-ATATTT-G-TCTG-GCAAAGAAAATTATT-AC-TGC-ATGTACTTCGTTTT--CAGTTT-ATGCCTTCAATTAC-AAA-AATATGTA-TCTCT----NTT-----A-------CTAAATGT-AAATGCGGGCTGACT--AAGAC-AAGAGCAGCT-TTGATTTCTTTCTGTCGACC-AATACCACGACAA--AAGGTATTCAAATAT-TGTACATGTAGATGAGTTATATA----TATAAACTCACA-AACATCTGCAA-AGTNA-TGTACTGTG-------G-------------------TTCTAC---------------------AAAATAATCACGGAGTTTATAA--ACTTGGAAAAATCTA-ATT-AA-GCATTTT-CAGTTTCTTG------TACTTATGATTTTTNTTTTACTT--TCTNAAGTAC-----CATG-ACATGTAATTCTAAACT--GCT---ACACTTGATTTAAAGA-TTTCAGG-AACAA-GAGAAGGTCCTATAA-CGGTTCCGTAAGATACGTC-TTTGTAATGA
gi|1 : TCCATTGTCAAAATATGTAAAACA---------------TCTTTCAGACTACTCGATCT--TTGAG-GAAATCAAATCTGAACATAAATGAGCATGGACTTCAAAAA-TCGTTACCCACTCTCCCTATACA--ATTTACACGATATTTCAAATTA--AGGTAAAGTAA-T-T-CTAGTTTTTGGTGCTC-------------CCCCCCCT----TTC----CA-ACTTTCCAGGAATGCTGAAGTTT-GCACTTACTTAGATTTTTTTTTAATTTTCTTCTTTATATTTT---TGCC-TGTCCGCAGTATT-CTGGACAATTGGTAA--TCAA------TTCTCATAAGGACTAGCGCCCC--ACCCACCTATCACTTTTGAAAATACGTAAATACATTGTAC-G-G--CGTTT----T-GTACAATTTCACAAATTAATATGAT-CAA-CCATTCATTGAACAGT-ATAGGCCATGTAACAG-CGAGCATATTT-GCTCTGAGCAAAGAATGTTA-T-ACTTGC-ATGTACTTTG-TTT--CTGTTT-ATCCCTTCAAATAC--AA-ACTATGTAGTCTTCATAGTTT-----AT------TTAAATGTAAAATGCGGGCTGACT--AAGACAAAGAGCCGCTATTGACTTCTTTCTGTCGACCAAATACCACGACAAATAAGGTA-TCA---------AC-TGTAGATGAGT--TATA----TATAAACTCACACAACATCTGCAATAGTAGCTGTACTGTG-------A-------------------T
gi|1 : taaggcgttttacctcttcccaaattcaacagacaccaatttgaaattcttgaatgttcccccaaattcacatgattttttttatgattcacgatttaaaatggctagaaatgttattttccagcttcaaagaaatgcaaaagatttaaggtgacgatcgttttcttacttatattcaacaaagtactgaatagtgtaaA-TGTATCGTG----------------------------TCGAC---------------------AAAATATCCACGGGTTTTACAACTGCTTGGAAAAATCTAGATT-AAAGCATTTTTCAGTT-CTGG------TACTTATGATTTTTTTTTTATTT--CCTTAAGTAT-----CATG-----GTAATTCTAAACTTAGCTTACATATTTGATT-AAAGA-TTTCAGGAAACAATGAGAAGGTCCTATAATTGGTTCCGTAAGATA-GTC--TTGTAATGAgattatattttcaatggtttatatgtatcgtgtcgacaaaatatccacgggttttacaactgcttggaaaaatctagattaaagcatttttcagttctggtacttatgattttttttttatttccttaagtatcatggtaattctaaacttagcttacatatttgattaaagatttcaggaaacaatgagaaggtcctataattggttccgtaagatagtcttgtaatgatttag
gi|2 : taaggcgttttacctcttcccaaattcaacagacaccaatttgaaattcttgaatgttcccccaaattcacatgattttttttatgattcacgatttaaaatggctagaaatgttattttccagcttcaaagaaatgcaaaagatttaaggtgacgatcgttttcttacttatattcaacaaagtactgaatagtgtaatccattgtcaaaatatgtaaaacatctttcagactactcgatctttgaggaaatcaaatctgaacataaatgagcatggacttcaaaaatcgttacccactctccctatacaatttacacgatatttcaaattaaggtaaagtaattctagtttttggtgctcccccccctttccaactttccaggaatgctgaagtttgcacttacttagatttttttttaattttcttctttatatttttgcctgtccgcagtattctggacaattggtaatcaattctcataaggactagcgccccacccacctatcacttttgaaaatacgtaaatacattgtacggcgttttgtacaatttcacaaattaatatgatcaaccattcattgaacagtataggccatgtaacagcgagcatatttgctctgagcaaagaatgttatacttgcatgtactttgtttctgtttatcccttcaaatacaaactatgtagtcttcatagtttatttaaatgtaaaatgcgggctgactaagacaaagagccgctattgacttctttctgtcgaccaaataccacgacaaataaggtatcaactgtagatgagttatatataaactcacacaacatctgcaatagtagctgtactgtgatgattatattttcaatggtttatGTTCCATTGTCAAAATATGTACAACA---------------TCTTCAAGCTTACTCAATCT---T-TGAGCAATCTA--CTGAACTATAATGAGAA-TAAC---AAAAACTCGTTACCC------CCT-TACA--ATTTA----AGATTTCAAAGT-TCGAGTAAA--GA-T-TTCTAGTGTTTTGTGCTCTTTTGCCCCCC--CCCCCCCCCCCCTTC----CACACTTTCCAGGA-TGTTG---TTTAGC-CTTACTTAGATATC-----AAATTTCTC--TTGTATTTT---TGCCC-GTC-G-AGTATTATTGGACAATTG-TAAACTCAACTTGACTTCTCATAAG-ACT-GCACCCCC-ACCCACCT--CACTTTGAAAAACA-GTA-GTACAT-GTAC-GCGACTG-CT----TTGT-CAA-TTCACCAAT--AAATGAT-CAA-CCATTCA-TGA--AGGTATATACCATGTAACAG-C-AG-ATATTTTG-TCTG-GCAAAGAAAATTATT-AC-TGC-ATGTACTTCGTATT--CAGTTT-ATGCTTTAAATTAC-AAACAATATGTA-TCTCT----GTT-----A--------TAAATGT-AAATGCGGGCTGACT--AAGAC-AAGAGCAGCT-TTGATTTCTTTCTGTTGACC-AATACCACGACAA--AAGGTATTCAAATAT-TATACATGTAGATAAGTTATATA----TATACACTCACA-AACATCTGCAA-AATTA-TGTACTGTG-------A-------------------TTCTAC---------------------AAAATAATCACGGAGTTTATAA--ACTTGGAAAAATCTAGATTAAA-ACATTTT-CAGTTTCTTG------TACTTATGATTTTTCTTTTATTT--TTTTAAGTACATGTACATGTACATGTAATTCTAAACT--GCT---ACACTTGATTTAAAGATTTTCAGG-AACAA-AAGAAGGCCCTTTAA-CGGTTCCGTAAGATACGTCTTTTGTAATGAtttag
gi|3 : GTTCCATTGTCAAAACATAT---------GT----CAAACATCTTCAAGCTTACTCGATCT---T-TGAGCAATCAA--CTGAAC-AAAATGAGAA-GG-C---AAAAACTCGTTACCCACTC-CCCT-----TCATTTA----AGATTTCAAAGT-TCGAGTAAA--GA-TCT-CGAGTGTTTTGTGCTCTTT-GCCCCC-----------------------ACACTTTCCAGGA-TGTTGAAGTTTAGC-CTTAGTTAGATA-A-----AAATTTCTC--TTATATTTTGCCTGTCCTGT-CG-AGTATTA-TGGACAATT-GTAAACTCAACTT---T--TCATAA-GACT-GCACCCCCCACCCACC--TCACTTTGAAAAACA-GT-AGTACA-TGTAC-GCGACCG--TACAAT-GT-CAA-TTCACCAAT--ATATGAT-CAA-CCATT-------------------------CAA-C-AG-ATATTT-G-TCTG-GAAAAGAAAATTATT-AC-TGC-ATGTACTTCATTTT--CAGTTT-ATGCCTTCAATTACAAAA-AATATGTA-TCTAT-----TT-----A--------TAAATGT-AAATGCGGGCTGATT--ACGAC-AAGAGCAGAT-TTGATT------------CA-AATA----------------ATT---ATATATGTA------GATGAGTTA-A-A----TATAAACTTACA-AACATCTGTAA-AGTAA-TGTACTGTG-------GTGATTTATTTTACATGTATTTCTAC---------------------AAA--AATC---GAGTTTATAA--ACTTGGAAAAATCTATATT-AATACATTTT-CAGTATATTGTAACGTTACTTATCATTTTTCTTTTA-TT--TCTAAAGT------------ACATGTAATTCTAAACT--GCT---ACACTTGATTTAAAGA-TTTCAGG-AACAA-GAGATGGTCCTATAA-CGGTTCCGTAAGATACGTC-TTTGTAATG
gi|4 : tttatattgaaaatttaaaacgaaaattGTTCC-TTGTCAAAATATGTACAGCAATGGTT-GACAAA-ATCTTCAAGCTTACTCGATCTGCTTGTGAGC-ATCAA--CTGAGCTAAAATGAAGA-GGAC---AAAAACT--TTTCCCA-TC-TCCTCTAGATTTTTTA----AAATTTTGAAGTATCGAGTAAA--AA-T-T-CTAGTTTACTGCGA-CTTT-GTC
gi|4 : taTACTGCGACT---T----T-GT-CAA-TTAACCAAT--A-ATGAT-CAAACCATTCA-TAA--TG--ATA--CCATTAAACAG-C-AG-ATATTT-G-TCTTTGCA--GAAAATTATTTAC-TGCCATGTACTTCGTTTTATCAGTTT-ATGCCT-CAATTAC-AAA-AA-ATGTA-TCTCT----GTT-----AACATTTTCTAAATGT-AAATG-GGACTGACTTAAAGAC-AAGAGCAGCT-TTGATTTCTTTCTGTTGACC-AATACCACGACAA--AAGGTATTCAAATAT-TATACATGTAGATGAGT--TATA----TATAAATTCACA-AACATCTGCAA-AGTAA-TGTACTGTGATGATTTA-------------------TTTTACATGGTTTACATGTATTTCTACAAAATAATCACGGAGTTTATAA--ACTTGGAAAA---------------ATTTT-CAGTTTCTTG------TACTAATGATTTTTGTAACACTTGATTTCAAGAAC-----aattaaccaataatgatcaaaccattcataatgataccattaaacagcagatatttgtctttgcagaaaattatttactgccatgtacttcgttttatcagtttatgcctcaattacaaaaaatgtatctctgttaacattttctaaatgtaaatgggactgacttaaagacaagagcagctttgatttctttctgttgaccaataccacgacaaaaggtattcaaatattatacatgtagatgagttatatataaattcacaaacatctgcaaagtaatgtactgtgatgatttattttacatggtttacatgtatttctacaaaataatcacggagtttataaacttggaaaaattttcagtttcttgtactaatgatttttgtaacacttgatttcaagaacaagagaaggtcctatgacggttccgtaagatacgtcttt
gi|4 : tagttccttgtcaaaatatgtacagcaatggttgacaaaatcttcaagcttactcgatctgcttgtgagcatcaactgagctaaaatgaagaggacaaaaacttttcccatctcctctagattttttaaaattttgaagtatcgagtaaaaattctagttTTTCAGTT--TCTT--GTAC-----TA-----ATG--ATTTT----T--GTA---ACACTTGATTT---------CAAG-AACAA-GAGAAGGTCCTATGA-CGGTTCCGTAAGATACGTC-TTTaagagaaggtcctatgacggttccgtaagatacgtcttt
gi|5 : tagttccttgtcaaaatatgtacagcaatggttgacaaaatcttcaagcttactcgatctgcttgtgagcatcaactgagctaaaatgaagaggacaaaaacttttcccatctcctctagattttttaaaattttgaagtatcgagtaaaaattctagtttactgcgactttgtcaattaaccaataatgatcaaaccattcataatgataccattaaacagcagatatttgtctttgcagaaaattatttactgccatgtacttcgttttatcagtttatgcctcaattacaaaaaatgtatctctgttaacattttctaaatgtaaatgggactgacttaaagacaagagcagctttgatttctttctgttgaccaataccacgacaaaaggtattcaaatattatacatgtagatgagttatatataaattcacaaacatctgcaaagtaatgtactgtgatgatttattttacatggtttacatgtatttctacaaaataatcacggagtttataaacttggaaaaatGTTCCATTGTCAAAATATGTACAACAATGGTTTGACAAA-ATCTTCAAGCTTATTCGATCT---T-TGAGCAATCAA--TTGAACTAATATGAGAA-GGAC---AAACACTCGTTACCCACTC-CCCCTTACG--ATTGA----AGACTTCGAAGT-TCGAGCAAA--AACT-T-CTAGTTTTTTGTGCACTTTTGCCCCCCACCCCTCCCT----TTTTCCACACACTTTCCAGGA-TGTTGAAGTTTAGC-CTTATTTAGATATT-----AAATTTCTA--TT
gi|6 : aaaaaattaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctatgaaaacgttaaggggttgttctttctaaaatttaaacataaaacccccaaattgcatgatttttttatgataaccaatacgtaagaaattcattcgtcgtaaaaatggcaagaaatatgaaaaggttattcaacaaaagtactgatGTTCC-TTGTCAAAATATGTACAGCAATGGTT-GACAAA-ATCTTCAAGCTTACTCGATCTGCTTGTGAGC-ATCAA--CTGAGCTAAAATGAAGA-GGAC---AAAAACT--TTTCCCA-TC-TCCTCTAGATTTTTTA----AAATTTTGAAGTATCGAGTAAA--AA-T-T-CTAGTTTctttt
gi|7 : tacgaaagccagctgagctcatttttgaaaaaaataaaaataaaattaactcgttataacgattacttatctcgttattaaacgagttatatctcgataaacgagttagggtatatgagaacgttaaggccttttctctcaaaattcaaacagaacattttgaatttttgagccacaattactgttttttttataacaattacgtaaaatttattgtcgtaacaaatgactagaaaattctcaaagaaatgaataaggtgacatcttatttcttttattcaacaaaaagttatgaata-GT-CAA-TCCATCAAG--ACATGATGCAG-TGTTTCA-TGA--AG--ATATGCCA-GTGGCAGGC-AG-ATATTT-G-TATG-GCAAAAAAA--TAT--AC-GAG-ATGTAATT--TTTT--TAATTTCATACTCT--------------TATGTA-TTTCT----TTTCTAAGA-------CTAG-TGC-AGGTGCAGGCTGACC--TAGCT-AAAAGCAGCA-TGAATTTATTTCTGTTGGCC-ACTATCACAAAAA--AAAGTATCGAAATAT-T-T-----CAAATAATTTATATACATGTATAAACTTACA-ACCATCTGTAA-ACTGA-TGAACTTTG-------G-------------------Tactgcgactt
gi|8 : acaaacacacaatccaggatgatgaaGTTCCATTGTCAAAATATGTACAgcattatatttttataaagtgtacatat
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GAAAAACATTAAGGGGGTTTTCTCTTAAAATTTAAACAGAATAATTTGAAATAAATTACGTGATTTTTTTTATGAAAACGATTACGTAAGAAATTTTATTCGTCGTAAAACTGGTTAGAAAATGTTATTTTCCAGCTCCAAAGAAATGAAAAGGTGACGATCTATTTCTTTTATTCAACAAAGT
Unaligned ( gi|10 ): TACGAAAGCTGGCTGGGCTCATTTTTTGAAAAATAAAAAAAAAATACCTCGTTATAATGAGTTAGTATATCTCGTTATAACGAGTTAGT
Unaligned ( gi|11 ): ATGCGTCGTAAAAATGACAAAAACTGTTATTTTTGAGCTCCTAACAATTGAATAAGTGACGAT
Unaligned ( gi|12 ): GTACGAAAGCCAACTGGGCTCATTTTGGAAAAAAATAAATAACTAGTTAGTAAA
Unaligned ( gi|13 ): TACGAAAGCTGGCTGGGCTCATTTTTGGAAAAATAAAA
Unaligned ( gi|14 ): AAGTTGGCTGGGTTCATTTTTGTTTTAAAAAAAAAAAA
Unaligned ( gi|15 ): GTACGAAAGGCGGCTGAGCTCATTTTCGAAAAAAA
Unaligned ( gi|16 ): TACGAAAGCCGTCTGAGCTCATTTTTGAAAAAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333333333 11 22 111 1 2222222 1111 1 1 333333333333333333333333 1 1 22222 111 222 1 1111 11 11 222222 11 1 222 222 1 11 11 1 33333333 11 22222222222 1 1 11 11 55555555555555555555555 11 11 1111111 1111 11111 222222222222222222222222222222222222222222222222222222 11 222222 1 222222 55555555555555 11 111 1 1 1 1 11
lowQualScore : 5 55555555555555 88 22 7 99 3 6 111 6 0 6 4444444 4444 5 99 6 6 6 5 666666666666666666666666 2 0 3 3 0 0 55555 44 444 333 2 7 6666 99 33 7 888888 7 33 3 000 888 3 44 44 0 2 3 77777777 8 8 8 11 9 8 8 8 77777777777 666 8 8 8 8 8 6 0 3 0 8 8 8 3 0 11 8 55 1 33 8 11 8 77777777777777777777777 8 11 8 8 0 8 3 11 0 666 4444444 3 6666 77777 8 8 6 000000000000000000000000000000000000000000000000000000 3 3 33 3 2 111111 0 3 888888 9 3 99999999999999 3 3 33 777 3 3 0 0 0 0 2 33
lowQualScore : . .............. .. .. . .. . . ... . . . ....... .... . .. . . . . ........................ . . . . . . ..... .. ... ... . . .... .. .. . ...... . .. . ... ... . .. .. . . . ........ . . . .. . . . . ........... ... . . . . . . . . . . . . . . .. . .. . .. . .. . ....................... . .. . . . . . .. . ... ....... . .... ..... . . . ...................................................... . . .. . . ...... . . ...... . . .............. . . .. ... . . . . . . . ..
lowQualScore : 0 55555555555555 33 33 3 22 5 7 777 7 8 7 5555555 2222 5 22 7 7 7 5 555555555555555555555555 5 0 2 2 0 2 00000 55 000 333 0 3 7777 33 33 3 000000 3 33 3 777 000 3 77 77 0 5 2 55555555 0 0 0 00 0 0 0 0 00000000000 666 0 0 0 0 0 0 8 8 6 0 0 0 2 8 00 0 88 0 66 0 44 0 88888888888888888888888 0 00 0 0 8 0 2 00 8 444 6666666 8 8888 88888 0 0 7 555555555555555555555555555555555555555555555555555555 2 2 88 2 5 000000 0 2 888888 2 2 22222222222222 2 2 88 555 2 2 0 0 0 0 5 22
consensus : GTTCCATTGTCAAAATATGTACAACAATGGTT-GACAAA-ATCTTCAAGCTTACTCGATCT--TTG-GAGCAATCAA--CTGAACTAAAATGAGAA-GGAC---AAAAACTCGTTACCCACTC-CCCTCTACATTATTTA----AGATTTCGAAGTATCGAGTAAA--AA-T-T-CTAGTTTTTTGTGCTCTTTTGCCCCCC--CCCCCCCT----TTC----CACACTTTCCAGG-ATGTTGAAGTTTAGC-CTTACTTAGA-----TATTAAATTTCT--CTTATATTTT---TGCCCTGTCCG-AGTATTACTGGACAATTGGTAAACTCAACTT---TTCTCATAAGGACT-GCG-CCCCCACCCACCT-TCACTTTGAAAAACA-GTAAGTACATTGTAC-GCGACCG-CT----T-GT-CAA-TTCACCAAT--ATATGAT-CAA-CCATTCA-TGA--AG--ATATGCCATGTAACA-GC-AG-ATATTT-G-TCTG-GCAAAGAAAATTATT-AC-TGC-ATGTACTTCGTTTT--CAGTTT-ATGCCTTCAATTAC-AAA-AATATGTA-TCTCT----NTTA-------CTA-----AATGT-AAATGCGGGCTGACT--AAGAC-AAGAGCAGCT-TTGATTTCTTTCTGTTGACC-AATACCACGACAA--AAGGTATTCAAATAT-TATACATGTAGATAAGTTATATA----TATAAACTCACA-AACATCTGCAA-AGTAA-TGTACTGTG-------A-------------------TTCTAC---------------------AAAATAATCACGGAGTTTATAA--ACTTGGAAAAATCTAGATT-AA-A-CATTTT-CAGTTTCTTG------TACTTATGATTTTTCTTTTATTTTCTTAAGTAC-----CATG-ACATGTAATTCTAAACT--GCT---ACACTTGATTTAAAGA-TTTCAGG-AACAA-GAGAAGGTCCTATAA-CGGTTCCGTAAGATACGTC-TTTGTAATGA
Reference ( family-6165 ) : GTTCCATTGTCAAAATATGTACAACAATGGTT-GACAAA-ATCTTCAAGCTTACTCGATCT--TTGTGAGCAATCAA--CTGAACTAAAATGAGAA-GGAC---AAAAACTCGTTACCCACTC-CCCTCTACATTATTTA----AGATTTCGAAGTATCGAGTAAA--AA-T-T-CTAGTTTTTTGTGCTCTTTTGCCCCCC--CCCCCCCT----TTC----CACACTTTCCAGG-ATGTTGAAGTTTAGC-CTTACTTAGA-----TATTAAATTTCT--CTTATATTTT---TGCCCTGTCCG-AGTATTACTGGACAATTGGTAAACTCAACTT---TTCTCATAAGGACT-GCG-CCCCCACCCACCT-TCACTTTGAAAAACA-GTAAGTACATTGTAC-GCGACCG-CT----T-GT-CAA-TTCACCAAT--ATATGAT-CAA-CCATTCA-TGA--AG--ATATGCCATGTAACA-GC-AG-ATATTT-G-TCTG-GCAAAGAAAATTATT-AC-TGC-ATGTACTTCGTTTT--CAGTTT-ATGCCTTCAATTAC-AAA-AATATGTA-TCTCT----NTTA-------CTA-----AATGT-AAATGCGGGCTGACT--AAGAC-AAGAGCAGCT-TTGATTTCTTTCTGTTGACC-AATACCACGACAA--AAGGTATTCAAATAT-TATACATGTAGATGAGTTATATA----TATAAACTCACA-AACATCTGCAA-AGTAA-TGTACTGTG-------A-------------------TTCTAC---------------------AAAATAATCACGGAGTTTATAA--ACTTGGAAAAATCTAGATT-AA-A-CATTTT-CAGTTTCTTG------TACTTATGATTTTTCTTTTATTTTCTTAAGTAC-----CATG-ACATGTAATTCTAAACT--GCT---ACACTTGATTTAAAGA-TTTCAGG-AACAA-GAGAAGGTCCTATAA-CGGTTCCGTAAGATACGTC-TTTGTAATGA
gi|1 : TCCATTGTCAAAATATGTAAAACA---------------TCTTTCAGACTACTCGATCT--TTGAG-GAAATCAAATCTGAACATAAATGAGCATGGACTTCAAAAA-TCGTTACCCACTCTCCCTATACA--ATTTACACGATATTTCAAATTA--AGGTAAAGTAA-T-T-CTAGTTTTTGGTGCTC-------------CCCCCCCT----TTC----CA-ACTTTCCAGGAATGCTGAAGTTT-GCACTTACTTAGATTTTTTTTTAATTTTCTTCTTTATATTTT---TG-CCTGTCCGCAGTATT-CTGGACAATTGGTAA--TCAA------TTCTCATAAGGACTAGCG--CCCCACCCACCTATCACTTTTGAAAATACGTAAATACATTGTAC-G-G--CGTTT----T-GTACAATTTCACAAATTAATATGAT-CAA-CCATTCATTGAACAGT-ATAGGCCATGTAACA-GCGAGCATATTT-GCTCTGAGCAAAGAATGTTA-T-ACTTGC-ATGTACTTTG-TTT--CTGTTT-ATCCCTTCAAATAC--AA-ACTATGTAGTCTTCATAGTTTAT------TTA-----AATGTAAAATGCGGGCTGACT--AAGACAAAGAGCCGCTATTGACTTCTTTCTGTCGACCAAATACCACGACAAATAAGGTA-TCA---------AC-TGTAGATGAGT--TATA----TATAAACTCACACAACATCTGCAATAGTAGCTGTACTGTG-------A-------------------T
gi|1 : taaggcgttttacctcttcccaaattcaacagacaccaatttgaaattcttgaatgttcccccaaattcacatgattttttttatgattcacgatttaaaatggctagaaatgttattttccagcttcaaagaaatgcaaaagatttaaggtgacgatcgttttcttacttatattcaacaaagtactgaatagtgtaaA-TGTATCGTG----------------------------TCGAC---------------------AAAATATCCACGGGTTTTACAACTGCTTGGAAAAATCTAGATT-AA-AGCATTTTTCAGTT-CTGG------TACTTATGATTTTTTTTTTATTTCCTTAAGTAT-----CATG-----GTAATTCTAAACTTAGCTTACATATTTGA-TTAAAGA-TTTCAGGAAACAATGAGAAGGTCCTATAATTGGTTCCGTAAGATA-GTC--TTGTAATGAgattatattttcaatggtttatatgtatcgtgtcgacaaaatatccacgggttttacaactgcttggaaaaatctagattaaagcatttttcagttctggtacttatgattttttttttatttccttaagtatcatggtaattctaaacttagcttacatatttgattaaagatttcaggaaacaatgagaaggtcctataattggttccgtaagatagtcttgtaatgatttag
gi|2 : taaggcgttttacctcttcccaaattcaacagacaccaatttgaaattcttgaatgttcccccaaattcacatgattttttttatgattcacgatttaaaatggctagaaatgttattttccagcttcaaagaaatgcaaaagatttaaggtgacgatcgttttcttacttatattcaacaaagtactgaatagtgtaatccattgtcaaaatatgtaaaacatctttcagactactcgatctttgaggaaatcaaatctgaacataaatgagcatggacttcaaaaatcgttacccactctccctatacaatttacacgatatttcaaattaaggtaaagtaattctagtttttggtgctcccccccctttccaactttccaggaatgctgaagtttgcacttacttagatttttttttaattttcttctttatatttttgcctgtccgcagtattctggacaattggtaatcaattctcataaggactagcgccccacccacctatcacttttgaaaatacgtaaatacattgtacggcgttttgtacaatttcacaaattaatatgatcaaccattcattgaacagtataggccatgtaacagcgagcatatttgctctgagcaaagaatgttatacttgcatgtactttgtttctgtttatcccttcaaatacaaactatgtagtcttcatagtttatttaaatgtaaaatgcgggctgactaagacaaagagccgctattgacttctttctgtcgaccaaataccacgacaaataaggtatcaactgtagatgagttatatataaactcacacaacatctgcaatagtagctgtactgtgatgattatattttcaatggtttatGTTCCATTGTCAAAATATGTACAACA---------------TCTTCAAGCTTACTCAATCT--TTG--AGCAATCTA--CTGAACTATAATGAGAA-TAAC---AAAAACTCGTTACCC------CCT-TACA--ATTTA----AGATTTCAAAGT-TCGAGTAAA--GA-T-TTCTAGTGTTTTGTGCTCTTTTGCCCCCC--CCCCCCCCCCCCTTC----CACACTTTCCAGG-ATGTTG---TTTAGC-CTTACTTAGA-----TATCAAATTTCT--CTTGTATTTT---TGCCC-GTC-G-AGTATTATTGGACAATTG-TAAACTCAACTTGACTTCTCATAAG-ACT-GCA-CCCCCACCCACCT--CACTTTGAAAAACA-GTA-GTACAT-GTAC-GCGACTG-CT----TTGT-CAA-TTCACCAAT--AAATGAT-CAA-CCATTCA-TGA--AGGTATATACCATGTAACA-GC-AG-ATATTTTG-TCTG-GCAAAGAAAATTATT-AC-TGC-ATGTACTTCGTATT--CAGTTT-ATGCTTTAAATTAC-AAACAATATGTA-TCTCT----GTTA--------TA-----AATGT-AAATGCGGGCTGACT--AAGAC-AAGAGCAGCT-TTGATTTCTTTCTGTTGACC-AATACCACGACAA--AAGGTATTCAAATAT-TATACATGTAGATAAGTTATATA----TATACACTCACA-AACATCTGCAA-AATTA-TGTACTGTG-------A-------------------TTCTAC---------------------AAAATAATCACGGAGTTTATAA--ACTTGGAAAAATCTAGATTAAA-A-CATTTT-CAGTTTCTTG------TACTTATGATTTTTCTTTTATTTTTTTAAGTACATGTACATGTACATGTAATTCTAAACT--GCT---ACACTTGATTTAAAGATTTTCAGG-AACAA-AAGAAGGCCCTTTAA-CGGTTCCGTAAGATACGTCTTTTGTAATGAtttag
gi|3 : GTTCCATTGTCAAAACATAT---------GT----CAAACATCTTCAAGCTTACTCGATCT--TTG--AGCAATCAA--CTGAAC-AAAATGAGAA-GG-C---AAAAACTCGTTACCCACTC-CCCT-----TCATTTA----AGATTTCAAAGT-TCGAGTAAA--GA-TCT-CGAGTGTTTTGTGCTC-TTTGCCC-------------------C----CACACTTTCCAGG-ATGTTGAAGTTTAGC-CTTAGTTAGA-----TA-AAAATTTCT--CTTATATTTTGCCTGTCCTGT-CG-AGTATTA-TGGACAATT-GTAAACTCAACTT---T--TCATAA-GACT-GCACCCCCCACCCACC--TCACTTTGAAAAACA-GT-AGTACA-TGTAC-GCGACCG--TACAAT-GT-CAA-TTCACCAAT--ATATGAT-CAA-CCATT-------------------------CA-AC-AG-ATATTT-G-TCTG-GAAAAGAAAATTATT-AC-TGC-ATGTACTTCATTTT--CAGTTT-ATGCCTTCAATTACAAAA-AATATGTA-TCTAT-----TTA--------TA-----AATGT-AAATGCGGGCTGATT--ACGAC-AAGAGCAGAT-TTGATT------------CA-AATA----------------ATT---ATATATGTAGATG-AGTTAA---ATATA--------AACTTACA-AACATCTGTAA-AGTAA-TGTACTGTG-------GTGATTTATTTTACATGTATTTCTAC---------------------AAA--AATC---GAGTTTATAA--ACTTGGAAAAATCTATATT-AATA-CATTTT-CAGTATATTGTAACGTTACTTATCATTTTTCTTTTA-TTTCTAAAGT------------ACATGTAATTCTAAACT--GCT---ACACTTGATTTAAAGA-TTTCAGG-AACAA-GAGATGGTCCTATAA-CGGTTCCGTAAGATACGTC-TTTGTAATG
gi|4 : tttatattgaaaatttaaaacgaaaattGTTCC-TTGTCAAAATATGTACAGCAATGGTT-GACAAA-ATCTTCAAGCTTACTCGATCTGCTTGTGAGC-ATCAA--CTGAGCTAAAATGAAGA-GGAC---AAAAACT--TTTCCCA-TC-TCCTCTAGATTTTTTA----AAATTTTGAAGTATCGAGTAAA--AA-T-T-CTAGTTT
gi|4 : taTACTGCGACT---T----T-GT-CAA-TTAACCAAT--A-ATGAT-CAAACCATTCA-TAA--TG--ATA--CCATTAAACA-GC-AG-ATATTT-G-TCTTTGCA--GAAAATTATTTAC-TGCCATGTACTTCGTTTTATCAGTTT-ATGCCT-CAATTAC-AAA-AA-ATGTA-TCTCT----GTTAACATTTTCTA-----AATGT-AAATG-GGACTGACTTAAAGAC-AAGAGCAGCT-TTGATTTCTTTCTGTTGACC-AATACCACGACAA--AAGGTATTCAAATAT-TATACATGTAGATGAGT--TATA----TATAAATTCACA-AACATCTGCAA-AGTAA-TGTACTGTGATGATTTA-------------------TTTTACATGGTTTACATGTATTTCTACAAAATAATCACGGAGTTTATAA--ACTTGGAAAA----------------ATTTT-CAGTTTCTTG------TACTAATGATTTTTactgcgactttgtcaattaaccaataatgatcaaaccattcataatgataccattaaacagcagatatttgtctttgcagaaaattatttactgccatgtacttcgttttatcagtttatgcctcaattacaaaaaatgtatctctgttaacattttctaaatgtaaatgggactgacttaaagacaagagcagctttgatttctttctgttgaccaataccacgacaaaaggtattcaaatattatacatgtagatgagttatatataaattcacaaacatctgcaaagtaatgtactgtgatgatttattttacatggtttacatgtatttctacaaaataatcacggagtttataaacttggaaaaattttcagtttcttgtactaatgatttttgtaacacttgatttcaagaacaagagaaggtcctatgacggttccgtaagatacgtcttt
gi|4 : tagttccttgtcaaaatatgtacagcaatggttgacaaaatcttcaagcttactcgatctgcttgtgagcatcaactgagctaaaatgaagaggacaaaaacttttcccatctcctctagattttttaaaattttgaagtatcgagtaaaaattctagttTTTCAGTTTCTT--GTAC-----TA-----ATG--ATTTT----T--GTA---ACACTTGATTT---------CAAG-AACAA-GAGAAGGTCCTATGA-CGGTTCCGTAAGATACGTC-TTTgtaacacttgatttcaagaacaagagaaggtcctatgacggttccgtaagatacgtcttt
gi|5 : tagttccttgtcaaaatatgtacagcaatggttgacaaaatcttcaagcttactcgatctgcttgtgagcatcaactgagctaaaatgaagaggacaaaaacttttcccatctcctctagattttttaaaattttgaagtatcgagtaaaaattctagtttactgcgactttgtcaattaaccaataatgatcaaaccattcataatgataccattaaacagcagatatttgtctttgcagaaaattatttactgccatgtacttcgttttatcagtttatgcctcaattacaaaaaatgtatctctgttaacattttctaaatgtaaatgggactgacttaaagacaagagcagctttgatttctttctgttgaccaataccacgacaaaaggtattcaaatattatacatgtagatgagttatatataaattcacaaacatctgcaaagtaatgtactgtgatgatttattttacatggtttacatgtatttctacaaaataatcacggagtttataaacttggaaaaatGTTCCATTGTCAAAATATGTACAACAATGGTTTGACAAA-ATCTTCAAGCTTATTCGATCT--TTG--AGCAATCAA--TTGAACTAATATGAGAA-GGAC---AAACACTCGTTACCCACTC-CCCCTTACG--ATTGA----AGACTTCGAAGT-TCGAGCAAA--AACT-T-CTAGTTTTTTGTGCACTTTTGCCCCCCACCCCTCCCT----TTTTCCACACACTTTCCAGG-ATGTTGAAGTTTAGC-CTTATTTAGA-----TATTAAATTTCT--ATT
gi|6 : aaaaaattaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctatgaaaacgttaaggggttgttctttctaaaatttaaacataaaacccccaaattgcatgatttttttatgataaccaatacgtaagaaattcattcgtcgtaaaaatggcaagaaatatgaaaaggttattcaacaaaagtactgatGTTCC-TTGTCAAAATATGTACAGCAATGGTT-GACAAA-ATCTTCAAGCTTACTCGATCTGCTTGTGAGC-ATCAA--CTGAGCTAAAATGAAGA-GGAC---AAAAACT--TTTCCCA-TC-TCCTCTAGATTTTTTA----AAATTTTGAAGTATCGAGTAAA--AA-T-T-CTAGTTTctttt
gi|7 : tacgaaagccagctgagctcatttttgaaaaaaataaaaataaaattaactcgttataacgattacttatctcgttattaaacgagttatatctcgataaacgagttagggtatatgagaacgttaaggccttttctctcaaaattcaaacagaacattttgaatttttgagccacaattactgttttttttataacaattacgtaaaatttattgtcgtaacaaatgactagaaaattctcaaagaaatgaataaggtgacatcttatttcttttattcaacaaaaagttatgaata-GT-CAA-TCCATCAAG--ACATGATGCAG-TGTTTCA-TGA--AG--ATATGCCA-GTGGCAGGC-AG-ATATTT-G-TATG-GCAAAAAAA--TA-T-AC-GAG-ATGTAATT--TTTT--TAATTTCATACTCT--------------TATGTA-TTTCT----TTT--------CTAAGACTAGTGC-AGGTGCAGGCTGACC--TAGCT-AAAAGCAGCA-TGAATTTATTTCTGTTGGCC-ACTATCACAAAAA--AAAGTATCGAAATAT-T-T-----CAAATAATTTATATACATGTATAAACTTACA-ACCATCTGTAA-ACTGA-TGAACTTTG-------G-------------------Tactgcgactt
gi|8 : acaaacacacaatccaggatgatgaaGTTCCATTGTCAAAATATGTACAgcattatatttttataaagtgtacatat
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GAAAAACATTAAGGGGGTTTTCTCTTAAAATTTAAACAGAATAATTTGAAATAAATTACGTGATTTTTTTTATGAAAACGATTACGTAAGAAATTTTATTCGTCGTAAAACTGGTTAGAAAATGTTATTTTCCAGCTCCAAAGAAATGAAAAGGTGACGATCTATTTCTTTTATTCAACAAAGT
Unaligned ( gi|10 ): TACGAAAGCTGGCTGGGCTCATTTTTTGAAAAATAAAAAAAAAATACCTCGTTATAATGAGTTAGTATATCTCGTTATAACGAGTTAGT
Unaligned ( gi|11 ): ATGCGTCGTAAAAATGACAAAAACTGTTATTTTTGAGCTCCTAACAATTGAATAAGTGACGAT
Unaligned ( gi|12 ): GTACGAAAGCCAACTGGGCTCATTTTGGAAAAAAATAAATAACTAGTTAGTAAA
Unaligned ( gi|13 ): TACGAAAGCTGGCTGGGCTCATTTTTGGAAAAATAAAA
Unaligned ( gi|14 ): AAGTTGGCTGGGTTCATTTTTGTTTTAAAAAAAAAAAA
Unaligned ( gi|15 ): GTACGAAAGGCGGCTGAGCTCATTTTCGAAAAAAA
Unaligned ( gi|16 ): TACGAAAGCCGTCTGAGCTCATTTTTGAAAAAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333333333 11 22 111 1 2222222 1111 1 1 333333333333333333333333 1 1 22222 111 222 1 1111 11 11 222222 11 1 222 222 1 11 11 1 33333333 11 22222222222 1 11 11 666666666666666666666 11 11 1111111 2222222222 222222222222222222222222222222222222222222222222222222 11 222222 1 222222 55555555555555 11 111 1 1 1 1 11
lowQualScore : 5 55555555555555 88 22 7 99 3 6 111 6 0 6 4444444 4444 5 99 6 6 6 5 666666666666666666666666 2 0 3 3 0 0 55555 44 444 333 2 7 6666 99 33 7 888888 7 33 3 000 888 3 44 44 0 2 3 77777777 8 8 8 11 9 8 8 8 77777777777 666 8 8 8 8 8 6 0 3 999 8 8 3 0 11 8 55 1 33 8 11 8 666666666666666666666 0 8 11 8 8 0 8 3 11 0 666 4444444 3 6666666666 8 8 6 000000000000000000000000000000000000000000000000000000 3 3 33 3 2 111111 0 3 888888 9 3 99999999999999 3 3 33 777 3 3 0 0 0 0 2 33
lowQualScore : . .............. .. .. . .. . . ... . . . ....... .... . .. . . . . ........................ . . . . . . ..... .. ... ... . . .... .. .. . ...... . .. . ... ... . .. .. . . . ........ . . . .. . . . . ........... ... . . . . . . . . ... . . . . .. . .. . .. . .. . ..................... . . .. . . . . . .. . ... ....... . .......... . . . ...................................................... . . .. . . ...... . . ...... . . .............. . . .. ... . . . . . . . ..
lowQualScore : 0 55555555555555 33 77 3 22 5 7 777 7 8 7 5555555 2222 5 22 7 7 7 5 555555555555555555555555 5 0 2 2 0 2 00000 55 000 333 0 3 7777 33 33 3 000000 3 33 3 777 000 3 77 77 0 5 2 55555555 0 0 0 00 0 0 0 0 00000000000 666 0 0 0 0 0 0 8 8 666 0 0 2 8 00 0 88 0 66 0 44 0 000000000000000000000 8 0 00 0 0 8 0 2 00 8 444 6666666 8 0000000000 0 0 7 555555555555555555555555555555555555555555555555555555 2 2 88 2 5 000000 0 2 888888 2 2 22222222222222 2 2 88 555 2 2 0 0 0 0 5 22
consensus : GTTCCATTGTCAAAATATGTACAACAATGG-TTGACAAA-ATCTTCAAGCTTACTCGATCT--TTG-GAGCAATCAA--CTGAACTAAAATGAGAA-GGAC---AAAAACTCGTTACCCACTC-CCCTCTACATTATTTA----AGATTTCGAAGTATCGAGTAAA--AA-T-T-CTAGTTTTTTGTGCTCTTTTGCCCCC--CCCCCCCCT----TTC----CACACTTTCCAGG-ATGTTGAAGTTTAGC-CTTACTTAGA-----TATTAAATTTCT--CTTATATTTT---TGCCCTGTCCG-AGTATTACTGGACAATTGGTAAACTCAACTT---TTCTCATAAGGACT-GCG-CCCCCACCCACCT-TCACTTTGAAAAACA-GTAAGTACATTGTAC-GCGACCG-CT----T-GT-CAA-TTCACCAAT--ATATGAT-CAA-CCATTCA-TGA--AG--ATATGCCATGTAACAG-C-AG-ATATTT-G-TCTG-GCAAAGAAAATTATT-AC-TGC-ATGTACTTCGTTTT--CAGTTT-ATGCCTTCAATTAC-AAA-AATATGTA-TCTCT----NTT-----A-------CTAAATGT-AAATGCGGGCTGACT--AAGAC-AAGAGCAGCT-TTGATTTCTTTCTGTTGACC-AATACCACGACAA--AAGGTATTCAAATAT-TATACATGTAGATAAGTTATATA----TATAAACTCACA-AACATCTGCAA-AGTAA-TGTACTGTG-------A-------------------TTCTAC---------------------AAAATAATCACGGAGTTTATAA--ACTTGGAAAAATCTAGATT-AA-A-CATTTT-CAGTTTCTTG------TACTTATGATTTTTCTTTTATTTTCTTAAGTAC-----CATG-ACATGTAATTCTAAACT--GCT---ACACTTGATTTAAAGA-TTTCAGG-AACAA-GAGAAGGTCCTATAA-CGGTTCCGTAAGATACGTC-TTTGTAATGA
Reference ( family-6165 ) : GTTCCATTGTCAAAATATGTACAACAATGG-TTGACAAA-ATCTTCAAGCTTACTCGATCT--TTG-GAGCAATCAA--CTGAACTAAAATGAGAA-GGAC---AAAAACTCGTTACCCACTC-CCCTCTACATTATTTA----AGATTTCGAAGTATCGAGTAAA--AA-T-T-CTAGTTTTTTGTGCTCTTTTGCCCCC--CCCCCCCCT----TTC----CACACTTTCCAGG-ATGTTGAAGTTTAGC-CTTACTTAGA-----TATTAAATTTCT--CTTATATTTT---TGCCCTGTCCG-AGTATTACTGGACAATTGGTAAACTCAACTT---TTCTCATAAGGACT-GCG-CCCCCACCCACCT-TCACTTTGAAAAACA-GTAAGTACATTGTAC-GCGACCG-CT----T-GT-CAA-TTCACCAAT--ATATGAT-CAA-CCATTCA-TGA--AG--ATATGCCATGTAACAG-C-AG-ATATTT-G-TCTG-GCAAAGAAAATTATT-AC-TGC-ATGTACTTCGTTTT--CAGTTT-ATGCCTTCAATTAC-AAA-AATATGTA-TCTCT----NTT-----A-------CTAAATGT-AAATGCGGGCTGACT--AAGAC-AAGAGCAGCT-TTGATTTCTTTCTGTTGACC-AATACCACGACAA--AAGGTATTCAAATAT-TATACATGTAGATAAGTTATATA----TATAAACTCACA-AACATCTGCAA-AGTAA-TGTACTGTG-------A-------------------TTCTAC---------------------AAAATAATCACGGAGTTTATAA--ACTTGGAAAAATCTAGATT-AA-A-CATTTT-CAGTTTCTTG------TACTTATGATTTTTCTTTTATTTTCTTAAGTAC-----CATG-ACATGTAATTCTAAACT--GCT---ACACTTGATTTAAAGA-TTTCAGG-AACAA-GAGAAGGTCCTATAA-CGGTTCCGTAAGATACGTC-TTTGTAATGA
gi|1 : TCCATTGTCAAAATATGTAAAACA---------------TCTTTCAGACTACTCGATCT--TTG-AGGAAATCAAATCTGAACATAAATGAGCATGGACTTCAAAAA-TCGTTACCCACTCTCCCTATACA--ATTTACACGATATTTCAAATTA--AGGTAAAGTAA-T-T-CTAGTTTTTGGTGCTC-------------CCCCCCCT----TTC----CA-ACTTTCCAGGAATGCTGAAGTTT-GCACTTACTTAGATTTTTTTTTAATTTTCTTCTTTATATTTT---TG-CCTGTCCGCAGTATT-CTGGACAATTGGTAA--TCAA------TTCTCATAAGGACTAGCG--CCCCACCCACCTATCACTTTTGAAAATACGTAAATACATTGTAC-G-G--CGTTT----T-GTACAATTTCACAAATTAATATGAT-CAA-CCATTCATTGAACAGT-ATAGGCCATGTAACAG-CGAGCATATTT-GCTCTGAGCAAAGAATGTTA-T-ACTTGC-ATGTACTTTG-TTT--CTGTTT-ATCCCTTCAAATAC--AA-ACTATGTAGTCTTCATAGTTT-----AT------TTAAATGTAAAATGCGGGCTGACT--AAGACAAAGAGCCGCTATTGACTTCTTTCTGTCGACCAAATACCACGACAAATAAGGTA-TCA---------AC-TGTAGATGAGT--TATA----TATAAACTCACACAACATCTGCAATAGTAGCTGTACTGTG-------A-------------------T
gi|1 : taaggcgttttacctcttcccaaattcaacagacaccaatttgaaattcttgaatgttcccccaaattcacatgattttttttatgattcacgatttaaaatggctagaaatgttattttccagcttcaaagaaatgcaaaagatttaaggtgacgatcgttttcttacttatattcaacaaagtactgaatagtgtaaA-TGTATCGTG----------------------------TCGAC---------------------AAAATATCCACGGGTTTTACAACTGCTTGGAAAAATCTAGATT-AA-AGCATTTTTCAGTT-CTGG------TACTTATGATTTTTTTTTTATTTCCTTAAGTAT-----CATG-----GTAATTCTAAACTTAGCTTACATATTTGA-TTAAAGA-TTTCAGGAAACAATGAGAAGGTCCTATAATTGGTTCCGTAAGATA-GTC--TTGTAATGAgattatattttcaatggtttatatgtatcgtgtcgacaaaatatccacgggttttacaactgcttggaaaaatctagattaaagcatttttcagttctggtacttatgattttttttttatttccttaagtatcatggtaattctaaacttagcttacatatttgattaaagatttcaggaaacaatgagaaggtcctataattggttccgtaagatagtcttgtaatgatttag
gi|2 : taaggcgttttacctcttcccaaattcaacagacaccaatttgaaattcttgaatgttcccccaaattcacatgattttttttatgattcacgatttaaaatggctagaaatgttattttccagcttcaaagaaatgcaaaagatttaaggtgacgatcgttttcttacttatattcaacaaagtactgaatagtgtaatccattgtcaaaatatgtaaaacatctttcagactactcgatctttgaggaaatcaaatctgaacataaatgagcatggacttcaaaaatcgttacccactctccctatacaatttacacgatatttcaaattaaggtaaagtaattctagtttttggtgctcccccccctttccaactttccaggaatgctgaagtttgcacttacttagatttttttttaattttcttctttatatttttgcctgtccgcagtattctggacaattggtaatcaattctcataaggactagcgccccacccacctatcacttttgaaaatacgtaaatacattgtacggcgttttgtacaatttcacaaattaatatgatcaaccattcattgaacagtataggccatgtaacagcgagcatatttgctctgagcaaagaatgttatacttgcatgtactttgtttctgtttatcccttcaaatacaaactatgtagtcttcatagtttatttaaatgtaaaatgcgggctgactaagacaaagagccgctattgacttctttctgtcgaccaaataccacgacaaataaggtatcaactgtagatgagttatatataaactcacacaacatctgcaatagtagctgtactgtgatgattatattttcaatggtttatGTTCCATTGTCAAAATATGTACAACA---------------TCTTCAAGCTTACTCAATCT--TTG--AGCAATCTA--CTGAACTATAATGAGAA-TAAC---AAAAACTCGTTACCC------CCT-TACA--ATTTA----AGATTTCAAAGT-TCGAGTAAA--GA-T-TTCTAGTGTTTTGTGCTCTTTTGCCCCC--CCCCCCCCCCCCCTTC----CACACTTTCCAGG-ATGTTG---TTTAGC-CTTACTTAGA-----TATCAAATTTCT--CTTGTATTTT---TGCCC-GTC-G-AGTATTATTGGACAATTG-TAAACTCAACTTGACTTCTCATAAG-ACT-GCA-CCCCCACCCACCT--CACTTTGAAAAACA-GTA-GTACAT-GTAC-GCGACTG-CT----TTGT-CAA-TTCACCAAT--AAATGAT-CAA-CCATTCA-TGA--AGGTATATACCATGTAACAG-C-AG-ATATTTTG-TCTG-GCAAAGAAAATTATT-AC-TGC-ATGTACTTCGTATT--CAGTTT-ATGCTTTAAATTAC-AAACAATATGTA-TCTCT----GTT-----A--------TAAATGT-AAATGCGGGCTGACT--AAGAC-AAGAGCAGCT-TTGATTTCTTTCTGTTGACC-AATACCACGACAA--AAGGTATTCAAATAT-TATACATGTAGATAAGTTATATA----TATACACTCACA-AACATCTGCAA-AATTA-TGTACTGTG-------A-------------------TTCTAC---------------------AAAATAATCACGGAGTTTATAA--ACTTGGAAAAATCTAGATTAAA-A-CATTTT-CAGTTTCTTG------TACTTATGATTTTTCTTTTATTTTTTTAAGTACATGTACATGTACATGTAATTCTAAACT--GCT---ACACTTGATTTAAAGATTTTCAGG-AACAA-AAGAAGGCCCTTTAA-CGGTTCCGTAAGATACGTCTTTTGTAATGAtttag
gi|3 : GTTCCATTGTCAAAACATAT---------G-T---CAAACATCTTCAAGCTTACTCGATCT--TTG--AGCAATCAA--CTGAAC-AAAATGAGAA-GG-C---AAAAACTCGTTACCCACTC-CCCT-----TCATTTA----AGATTTCAAAGT-TCGAGTAAA--GA-TCT-CGAGTGTTTTGTGCTC-TTTGCCC-------------------C----CACACTTTCCAGG-ATGTTGAAGTTTAGC-CTTAGTTAGA-----TA-AAAATTTCT--CTTATATTTTGCCTGTCCTGT-CG-AGTATTA-TGGACAATT-GTAAACTCAACTT---T--TCATAA-GACT-GCACCCCCCACCCACC--TCACTTTGAAAAACA-GT-AGTACA-TGTAC-GCGACCG--TACAAT-GT-CAA-TTCACCAAT--ATATGAT-CAA-CCATT-------------------------CAA-C-AG-ATATTT-G-TCTG-GAAAAGAAAATTATT-AC-TGC-ATGTACTTCATTTT--CAGTTT-ATGCCTTCAATTACAAAA-AATATGTA-TCTAT-----TT-----A--------TAAATGT-AAATGCGGGCTGATT--ACGAC-AAGAGCAGAT-TTGATT------------CA-AATA----------------ATT---ATATATGTAGATG-AGTTAAAT-----------ATAAACTTACA-AACATCTGTAA-AGTAA-TGTACTGTG-------GTGATTTATTTTACATGTATTTCTAC---------------------AAA--AATC---GAGTTTATAA--ACTTGGAAAAATCTATATT-AATA-CATTTT-CAGTATATTGTAACGTTACTTATCATTTTTCTTTTA-TTTCTAAAGT------------ACATGTAATTCTAAACT--GCT---ACACTTGATTTAAAGA-TTTCAGG-AACAA-GAGATGGTCCTATAA-CGGTTCCGTAAGATACGTC-TTTGTAATG
gi|4 : tttatattgaaaatttaaaacgaaaattGTTCC-TTGTCAAAATATGTACAGCAATGG-TTGACAAA-ATCTTCAAGCTTACTCGATCTGCTTGTGAGC-ATCAA--CTGAGCTAAAATGAAGA-GGAC---AAAAACT--TTTCCCA-TC-TCCTCTAGATTTTTTA----AAATTTTGAAGTATCGAGTAAA--AA-T-T-CTAGTTT
gi|4 : taTACTGCGACT---T----T-GT-CAA-TTAACCAAT--A-ATGAT-CAAACCATTCA-TAA--TG--ATA--CCATTAAACAG-C-AG-ATATTT-G-TCTTTGCA--GAAAATTATTTAC-TGCCATGTACTTCGTTTTATCAGTTT-ATGCCT-CAATTAC-AAA-AA-ATGTA-TCTCT----GTT-----AACATTTTCTAAATGT-AAATG-GGACTGACTTAAAGAC-AAGAGCAGCT-TTGATTTCTTTCTGTTGACC-AATACCACGACAA--AAGGTATTCAAATAT-TATACATGTAGATGAGT--TATA----TATAAATTCACA-AACATCTGCAA-AGTAA-TGTACTGTGATGATTTA-------------------TTTTACATGGTTTACATGTATTTCTACAAAATAATCACGGAGTTTATAA--ACTTGGAAAA----------------ATTTT-CAGTTTCTTG------TACTAATGATTTTTactgcgactttgtcaattaaccaataatgatcaaaccattcataatgataccattaaacagcagatatttgtctttgcagaaaattatttactgccatgtacttcgttttatcagtttatgcctcaattacaaaaaatgtatctctgttaacattttctaaatgtaaatgggactgacttaaagacaagagcagctttgatttctttctgttgaccaataccacgacaaaaggtattcaaatattatacatgtagatgagttatatataaattcacaaacatctgcaaagtaatgtactgtgatgatttattttacatggtttacatgtatttctacaaaataatcacggagtttataaacttggaaaaattttcagtttcttgtactaatgatttttgtaacacttgatttcaagaacaagagaaggtcctatgacggttccgtaagatacgtcttt
gi|4 : tagttccttgtcaaaatatgtacagcaatggttgacaaaatcttcaagcttactcgatctgcttgtgagcatcaactgagctaaaatgaagaggacaaaaacttttcccatctcctctagattttttaaaattttgaagtatcgagtaaaaattctagttTTTCAGTTTCTT--GTAC-----TA-----ATG--ATTTT----T--GTA---ACACTTGATTT---------CAAG-AACAA-GAGAAGGTCCTATGA-CGGTTCCGTAAGATACGTC-TTTgtaacacttgatttcaagaacaagagaaggtcctatgacggttccgtaagatacgtcttt
gi|5 : tagttccttgtcaaaatatgtacagcaatggttgacaaaatcttcaagcttactcgatctgcttgtgagcatcaactgagctaaaatgaagaggacaaaaacttttcccatctcctctagattttttaaaattttgaagtatcgagtaaaaattctagtttactgcgactttgtcaattaaccaataatgatcaaaccattcataatgataccattaaacagcagatatttgtctttgcagaaaattatttactgccatgtacttcgttttatcagtttatgcctcaattacaaaaaatgtatctctgttaacattttctaaatgtaaatgggactgacttaaagacaagagcagctttgatttctttctgttgaccaataccacgacaaaaggtattcaaatattatacatgtagatgagttatatataaattcacaaacatctgcaaagtaatgtactgtgatgatttattttacatggtttacatgtatttctacaaaataatcacggagtttataaacttggaaaaatGTTCCATTGTCAAAATATGTACAACAATGGTTTGACAAA-ATCTTCAAGCTTATTCGATCT--TT--GAGCAATCAA--TTGAACTAATATGAGAA-GGAC---AAACACTCGTTACCCACTC-CCCCTTACG--ATTGA----AGACTTCGAAGT-TCGAGCAAA--AACT-T-CTAGTTTTTTGTGCACTTTTGCCCCCCACCCCTCCCT----TTTTCCACACACTTTCCAGG-ATGTTGAAGTTTAGC-CTTATTTAGA-----TATTAAATTTCT--ATT
gi|6 : aaaaaattaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctatgaaaacgttaaggggttgttctttctaaaatttaaacataaaacccccaaattgcatgatttttttatgataaccaatacgtaagaaattcattcgtcgtaaaaatggcaagaaatatgaaaaggttattcaacaaaagtactgatGTTCC-TTGTCAAAATATGTACAGCAATGG-TTGACAAA-ATCTTCAAGCTTACTCGATCTGCTTGTGAGC-ATCAA--CTGAGCTAAAATGAAGA-GGAC---AAAAACT--TTTCCCA-TC-TCCTCTAGATTTTTTA----AAATTTTGAAGTATCGAGTAAA--AA-T-T-CTAGTTTctttt
gi|7 : tacgaaagccagctgagctcatttttgaaaaaaataaaaataaaattaactcgttataacgattacttatctcgttattaaacgagttatatctcgataaacgagttagggtatatgagaacgttaaggccttttctctcaaaattcaaacagaacattttgaatttttgagccacaattactgttttttttataacaattacgtaaaatttattgtcgtaacaaatgactagaaaattctcaaagaaatgaataaggtgacatcttatttcttttattcaacaaaaagttatgaata-GT-CAA-TCCATCAAG--ACATGATGCAG-TGTTTCA-TGA--AG--ATATGCCA-GTGGCAGGC-AG-ATATTT-G-TATG-GCAAAAAAA--TAT--AC-GAG-ATGTAATT--TTTT--TAATTTCATACTCT--------------TATGTA-TTTCT----TTTCTAAGA-------CTAG-TGC-AGGTGCAGGCTGACC--TAGCT-AAAAGCAGCA-TGAATTTATTTCTGTTGGCC-ACTATCACAAAAA--AAAGTATCGAAATAT-T-T-----CAAATAATTTATATACATGTATAAACTTACA-ACCATCTGTAA-ACTGA-TGAACTTTG-------G-------------------Tactgcgactt
gi|8 : acaaacacacaatccaggatgatgaaGTTCCATTGTCAAAATATGTACAgcattatatttttataaagtgtacatat
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GAAAAACATTAAGGGGGTTTTCTCTTAAAATTTAAACAGAATAATTTGAAATAAATTACGTGATTTTTTTTATGAAAACGATTACGTAAGAAATTTTATTCGTCGTAAAACTGGTTAGAAAATGTTATTTTCCAGCTCCAAAGAAATGAAAAGGTGACGATCTATTTCTTTTATTCAACAAAGT
Unaligned ( gi|10 ): TACGAAAGCTGGCTGGGCTCATTTTTTGAAAAATAAAAAAAAAATACCTCGTTATAATGAGTTAGTATATCTCGTTATAACGAGTTAGT
Unaligned ( gi|11 ): ATGCGTCGTAAAAATGACAAAAACTGTTATTTTTGAGCTCCTAACAATTGAATAAGTGACGAT
Unaligned ( gi|12 ): GTACGAAAGCCAACTGGGCTCATTTTGGAAAAAAATAAATAACTAGTTAGTAAA
Unaligned ( gi|13 ): TACGAAAGCTGGCTGGGCTCATTTTTGGAAAAATAAAA
Unaligned ( gi|14 ): AAGTTGGCTGGGTTCATTTTTGTTTTAAAAAAAAAAAA
Unaligned ( gi|15 ): GTACGAAAGGCGGCTGAGCTCATTTTCGAAAAAAA
Unaligned ( gi|16 ): TACGAAAGCCGTCTGAGCTCATTTTTGAAAAAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333333333 11 22 111 1 2222222 1111 1 1 333333333333333333333333 1 1 22222 111 222 1 1111 11 11 222222 11 1 222 222 1 11 11 1 33333333 11 22222222222 1 11 11 666666666666666666666 11 11 1111111 2222222222 222222222222222222222222222222222222222222222222222222 11 222222 1 222222 55555555555555 11 111 1 1 1 1 11
lowQualScore : 5 55555555555555 88 22 7 99 3 6 111 6 0 6 4444444 4444 5 99 6 6 6 5 666666666666666666666666 2 0 3 3 0 0 55555 44 444 333 2 7 6666 99 33 7 888888 7 33 3 000 888 3 44 44 0 2 3 77777777 8 8 8 11 9 8 8 8 77777777777 666 8 8 8 8 8 6 0 3 999 8 8 3 0 11 8 55 1 33 8 11 8 666666666666666666666 0 8 11 8 8 0 8 3 11 0 666 4444444 3 6666666666 8 8 6 000000000000000000000000000000000000000000000000000000 3 3 33 3 2 111111 0 3 888888 9 3 99999999999999 3 3 33 777 3 3 0 0 0 0 2 33
lowQualScore : . .............. .. .. . .. . . ... . . . ....... .... . .. . . . . ........................ . . . . . . ..... .. ... ... . . .... .. .. . ...... . .. . ... ... . .. .. . . . ........ . . . .. . . . . ........... ... . . . . . . . . ... . . . . .. . .. . .. . .. . ..................... . . .. . . . . . .. . ... ....... . .......... . . . ...................................................... . . .. . . ...... . . ...... . . .............. . . .. ... . . . . . . . ..
lowQualScore : 0 55555555555555 33 77 3 22 5 7 777 7 8 7 5555555 2222 5 22 7 7 7 5 555555555555555555555555 5 0 2 2 0 2 00000 55 000 333 0 3 7777 33 33 3 000000 3 33 3 777 000 3 77 77 0 5 2 55555555 0 0 0 00 0 0 0 0 00000000000 666 0 0 0 0 0 0 8 8 666 0 0 2 8 00 0 88 0 66 0 44 0 000000000000000000000 8 0 00 0 0 8 0 2 00 8 444 6666666 8 0000000000 0 0 7 555555555555555555555555555555555555555555555555555555 2 2 88 2 5 000000 0 2 888888 2 2 22222222222222 2 2 88 555 2 2 0 0 0 0 5 22
consensus : GTTCCATTGTCAAAATATGTACAACAATGG-TTGACAAA-ATCTTCAAGCTTACTCGATCT--TTG-GAGCAATCAA--CTGAACTAAAATGAGAA-GGAC---AAAAACTCGTTACCCACTC-CCCTCTACATTATTTA----AGATTTCGAAGTATCGAGTAAA--AA-T-T-CTAGTTTTTTGTGCTCTTTTGCCCCC--CCCCCCCCT----TTC----CACACTTTCCAGG-ATGTTGAAGTTTAGC-CTTACTTAGA-----TATTAAATTTCT--CTTATATTTT---TGCCCTGTCCG-AGTATTACTGGACAATTGGTAAACTCAACTT---TTCTCATAAGGACT-GCG-CCCCCACCCACCT-TCACTTTGAAAAACA-GTAAGTACATTGTAC-GCGACCG-CT----T-GT-CAA-TTCACCAAT--ATATGAT-CAA-CCATTCA-TGA--AG--ATATGCCATGTAACAG-C-AG-ATATTT-G-TCTG-GCAAAGAAAATTATT-AC-TGC-ATGTACTTCGTTTT--CAGTTT-ATGCCTTCAATTAC-AAA-AATATGTA-TCTCT----NTT-----A-------CTAAATGT-AAATGCGGGCTGACT--AAGAC-AAGAGCAGCT-TTGATTTCTTTCTGTTGACC-AATACCACGACAA--AAGGTATTCAAATAT-TATACATGTAGATAAGTTATATA----TATAAACTCACA-AACATCTGCAA-AGTAA-TGTACTGTG-------A-------------------TTCTAC---------------------AAAATAATCACGGAGTTTATAA--ACTTGGAAAAATCTAGATT-AA-A-CATTTT-CAGTTTCTTG------TACTTATGATTTTTCTTTTATTTTCTTAAGTAC-----CATG-ACATGTAATTCTAAACT--GCT---ACACTTGATTTAAAGA-TTTCAGG-AACAA-GAGAAGGTCCTATAA-CGGTTCCGTAAGATACGTC-TTTGTAATGA
Reference ( family-6165 ) : GTTCCATTGTCAAAATATGTACAACAATGG-TTGACAAA-ATCTTCAAGCTTACTCGATCT--TTG-GAGCAATCAA--CTGAACTAAAATGAGAA-GGAC---AAAAACTCGTTACCCACTC-CCCTCTACATTATTTA----AGATTTCGAAGTATCGAGTAAA--AA-T-T-CTAGTTTTTTGTGCTCTTTTGCCCCC--CCCCCCCCT----TTC----CACACTTTCCAGG-ATGTTGAAGTTTAGC-CTTACTTAGA-----TATTAAATTTCT--CTTATATTTT---TGCCCTGTCCG-AGTATTACTGGACAATTGGTAAACTCAACTT---TTCTCATAAGGACT-GCG-CCCCCACCCACCT-TCACTTTGAAAAACA-GTAAGTACATTGTAC-GCGACCG-CT----T-GT-CAA-TTCACCAAT--ATATGAT-CAA-CCATTCA-TGA--AG--ATATGCCATGTAACAG-C-AG-ATATTT-G-TCTG-GCAAAGAAAATTATT-AC-TGC-ATGTACTTCGTTTT--CAGTTT-ATGCCTTCAATTAC-AAA-AATATGTA-TCTCT----NTT-----A-------CTAAATGT-AAATGCGGGCTGACT--AAGAC-AAGAGCAGCT-TTGATTTCTTTCTGTTGACC-AATACCACGACAA--AAGGTATTCAAATAT-TATACATGTAGATAAGTTATATA----TATAAACTCACA-AACATCTGCAA-AGTAA-TGTACTGTG-------A-------------------TTCTAC---------------------AAAATAATCACGGAGTTTATAA--ACTTGGAAAAATCTAGATT-AA-A-CATTTT-CAGTTTCTTG------TACTTATGATTTTTCTTTTATTTTCTTAAGTAC-----CATG-ACATGTAATTCTAAACT--GCT---ACACTTGATTTAAAGA-TTTCAGG-AACAA-GAGAAGGTCCTATAA-CGGTTCCGTAAGATACGTC-TTTGTAATGA
gi|1 : TCCATTGTCAAAATATGTAAAACA---------------TCTTTCAGACTACTCGATCT--TTG-AGGAAATCAAATCTGAACATAAATGAGCATGGACTTCAAAAA-TCGTTACCCACTCTCCCTATACA--ATTTACACGATATTTCAAATTA--AGGTAAAGTAA-T-T-CTAGTTTTTGGTGCTC-------------CCCCCCCT----TTC----CA-ACTTTCCAGGAATGCTGAAGTTT-GCACTTACTTAGATTTTTTTTTAATTTTCTTCTTTATATTTT---TG-CCTGTCCGCAGTATT-CTGGACAATTGGTAA--TCAA------TTCTCATAAGGACTAGCG--CCCCACCCACCTATCACTTTTGAAAATACGTAAATACATTGTAC-G-G--CGTTT----T-GTACAATTTCACAAATTAATATGAT-CAA-CCATTCATTGAACAGT-ATAGGCCATGTAACAG-CGAGCATATTT-GCTCTGAGCAAAGAATGTTA-T-ACTTGC-ATGTACTTTG-TTT--CTGTTT-ATCCCTTCAAATAC--AA-ACTATGTAGTCTTCATAGTTT-----AT------TTAAATGTAAAATGCGGGCTGACT--AAGACAAAGAGCCGCTATTGACTTCTTTCTGTCGACCAAATACCACGACAAATAAGGTA-TCA---------AC-TGTAGATGAGT--TATA----TATAAACTCACACAACATCTGCAATAGTAGCTGTACTGTG-------A-------------------T
gi|1 : taaggcgttttacctcttcccaaattcaacagacaccaatttgaaattcttgaatgttcccccaaattcacatgattttttttatgattcacgatttaaaatggctagaaatgttattttccagcttcaaagaaatgcaaaagatttaaggtgacgatcgttttcttacttatattcaacaaagtactgaatagtgtaaA-TGTATCGTG----------------------------TCGAC---------------------AAAATATCCACGGGTTTTACAACTGCTTGGAAAAATCTAGATT-AA-AGCATTTTTCAGTT-CTGG------TACTTATGATTTTTTTTTTATTTCCTTAAGTAT-----CATG-----GTAATTCTAAACTTAGCTTACATATTTGA-TTAAAGA-TTTCAGGAAACAATGAGAAGGTCCTATAATTGGTTCCGTAAGATA-GTC--TTGTAATGAgattatattttcaatggtttatatgtatcgtgtcgacaaaatatccacgggttttacaactgcttggaaaaatctagattaaagcatttttcagttctggtacttatgattttttttttatttccttaagtatcatggtaattctaaacttagcttacatatttgattaaagatttcaggaaacaatgagaaggtcctataattggttccgtaagatagtcttgtaatgatttag
gi|2 : taaggcgttttacctcttcccaaattcaacagacaccaatttgaaattcttgaatgttcccccaaattcacatgattttttttatgattcacgatttaaaatggctagaaatgttattttccagcttcaaagaaatgcaaaagatttaaggtgacgatcgttttcttacttatattcaacaaagtactgaatagtgtaatccattgtcaaaatatgtaaaacatctttcagactactcgatctttgaggaaatcaaatctgaacataaatgagcatggacttcaaaaatcgttacccactctccctatacaatttacacgatatttcaaattaaggtaaagtaattctagtttttggtgctcccccccctttccaactttccaggaatgctgaagtttgcacttacttagatttttttttaattttcttctttatatttttgcctgtccgcagtattctggacaattggtaatcaattctcataaggactagcgccccacccacctatcacttttgaaaatacgtaaatacattgtacggcgttttgtacaatttcacaaattaatatgatcaaccattcattgaacagtataggccatgtaacagcgagcatatttgctctgagcaaagaatgttatacttgcatgtactttgtttctgtttatcccttcaaatacaaactatgtagtcttcatagtttatttaaatgtaaaatgcgggctgactaagacaaagagccgctattgacttctttctgtcgaccaaataccacgacaaataaggtatcaactgtagatgagttatatataaactcacacaacatctgcaatagtagctgtactgtgatgattatattttcaatggtttatGTTCCATTGTCAAAATATGTACAACA---------------TCTTCAAGCTTACTCAATCT--TTG--AGCAATCTA--CTGAACTATAATGAGAA-TAAC---AAAAACTCGTTACCC------CCT-TACA--ATTTA----AGATTTCAAAGT-TCGAGTAAA--GA-T-TTCTAGTGTTTTGTGCTCTTTTGCCCCC--CCCCCCCCCCCCCTTC----CACACTTTCCAGG-ATGTTG---TTTAGC-CTTACTTAGA-----TATCAAATTTCT--CTTGTATTTT---TGCCC-GTC-G-AGTATTATTGGACAATTG-TAAACTCAACTTGACTTCTCATAAG-ACT-GCA-CCCCCACCCACCT--CACTTTGAAAAACA-GTA-GTACAT-GTAC-GCGACTG-CT----TTGT-CAA-TTCACCAAT--AAATGAT-CAA-CCATTCA-TGA--AGGTATATACCATGTAACAG-C-AG-ATATTTTG-TCTG-GCAAAGAAAATTATT-AC-TGC-ATGTACTTCGTATT--CAGTTT-ATGCTTTAAATTAC-AAACAATATGTA-TCTCT----GTT-----A--------TAAATGT-AAATGCGGGCTGACT--AAGAC-AAGAGCAGCT-TTGATTTCTTTCTGTTGACC-AATACCACGACAA--AAGGTATTCAAATAT-TATACATGTAGATAAGTTATATA----TATACACTCACA-AACATCTGCAA-AATTA-TGTACTGTG-------A-------------------TTCTAC---------------------AAAATAATCACGGAGTTTATAA--ACTTGGAAAAATCTAGATTAAA-A-CATTTT-CAGTTTCTTG------TACTTATGATTTTTCTTTTATTTTTTTAAGTACATGTACATGTACATGTAATTCTAAACT--GCT---ACACTTGATTTAAAGATTTTCAGG-AACAA-AAGAAGGCCCTTTAA-CGGTTCCGTAAGATACGTCTTTTGTAATGAtttag
gi|3 : GTTCCATTGTCAAAACATAT---------G-T---CAAACATCTTCAAGCTTACTCGATCT--TTG--AGCAATCAA--CTGAAC-AAAATGAGAA-GG-C---AAAAACTCGTTACCCACTC-CCCT-----TCATTTA----AGATTTCAAAGT-TCGAGTAAA--GA-TCT-CGAGTGTTTTGTGCTC-TTTGCCC-------------------C----CACACTTTCCAGG-ATGTTGAAGTTTAGC-CTTAGTTAGA-----TA-AAAATTTCT--CTTATATTTTGCCTGTCCTGT-CG-AGTATTA-TGGACAATT-GTAAACTCAACTT---T--TCATAA-GACT-GCACCCCCCACCCACC--TCACTTTGAAAAACA-GT-AGTACA-TGTAC-GCGACCG--TACAAT-GT-CAA-TTCACCAAT--ATATGAT-CAA-CCATT-------------------------CAA-C-AG-ATATTT-G-TCTG-GAAAAGAAAATTATT-AC-TGC-ATGTACTTCATTTT--CAGTTT-ATGCCTTCAATTACAAAA-AATATGTA-TCTAT-----TT-----A--------TAAATGT-AAATGCGGGCTGATT--ACGAC-AAGAGCAGAT-TTGATT------------CA-AATA----------------ATT---ATATATGTAGATG-AGTTAAAT-----------ATAAACTTACA-AACATCTGTAA-AGTAA-TGTACTGTG-------GTGATTTATTTTACATGTATTTCTAC---------------------AAA--AATC---GAGTTTATAA--ACTTGGAAAAATCTATATT-AATA-CATTTT-CAGTATATTGTAACGTTACTTATCATTTTTCTTTTA-TTTCTAAAGT------------ACATGTAATTCTAAACT--GCT---ACACTTGATTTAAAGA-TTTCAGG-AACAA-GAGATGGTCCTATAA-CGGTTCCGTAAGATACGTC-TTTGTAATG
gi|4 : tttatattgaaaatttaaaacgaaaattGTTCC-TTGTCAAAATATGTACAGCAATGG-TTGACAAA-ATCTTCAAGCTTACTCGATCTGCTTGTGAGC-ATCAA--CTGAGCTAAAATGAAGA-GGAC---AAAAACT--TTTCCCA-TC-TCCTCTAGATTTTTTA----AAATTTTGAAGTATCGAGTAAA--AA-T-T-CTAGTTT
gi|4 : taTACTGCGACT---T----T-GT-CAA-TTAACCAAT--A-ATGAT-CAAACCATTCA-TAA--TG--ATA--CCATTAAACAG-C-AG-ATATTT-G-TCTTTGCA--GAAAATTATTTAC-TGCCATGTACTTCGTTTTATCAGTTT-ATGCCT-CAATTAC-AAA-AA-ATGTA-TCTCT----GTT-----AACATTTTCTAAATGT-AAATG-GGACTGACTTAAAGAC-AAGAGCAGCT-TTGATTTCTTTCTGTTGACC-AATACCACGACAA--AAGGTATTCAAATAT-TATACATGTAGATGAGT--TATA----TATAAATTCACA-AACATCTGCAA-AGTAA-TGTACTGTGATGATTTA-------------------TTTTACATGGTTTACATGTATTTCTACAAAATAATCACGGAGTTTATAA--ACTTGGAAAA----------------ATTTT-CAGTTTCTTG------TACTAATGATTTTTactgcgactttgtcaattaaccaataatgatcaaaccattcataatgataccattaaacagcagatatttgtctttgcagaaaattatttactgccatgtacttcgttttatcagtttatgcctcaattacaaaaaatgtatctctgttaacattttctaaatgtaaatgggactgacttaaagacaagagcagctttgatttctttctgttgaccaataccacgacaaaaggtattcaaatattatacatgtagatgagttatatataaattcacaaacatctgcaaagtaatgtactgtgatgatttattttacatggtttacatgtatttctacaaaataatcacggagtttataaacttggaaaaattttcagtttcttgtactaatgatttttgtaacacttgatttcaagaacaagagaaggtcctatgacggttccgtaagatacgtcttt
gi|4 : tagttccttgtcaaaatatgtacagcaatggttgacaaaatcttcaagcttactcgatctgcttgtgagcatcaactgagctaaaatgaagaggacaaaaacttttcccatctcctctagattttttaaaattttgaagtatcgagtaaaaattctagttTTTCAGTTTCTT--GTAC-----TA-----ATG--ATTTT----T--GTA---ACACTTGATTT---------CAAG-AACAA-GAGAAGGTCCTATGA-CGGTTCCGTAAGATACGTC-TTTgtaacacttgatttcaagaacaagagaaggtcctatgacggttccgtaagatacgtcttt
gi|5 : tagttccttgtcaaaatatgtacagcaatggttgacaaaatcttcaagcttactcgatctgcttgtgagcatcaactgagctaaaatgaagaggacaaaaacttttcccatctcctctagattttttaaaattttgaagtatcgagtaaaaattctagtttactgcgactttgtcaattaaccaataatgatcaaaccattcataatgataccattaaacagcagatatttgtctttgcagaaaattatttactgccatgtacttcgttttatcagtttatgcctcaattacaaaaaatgtatctctgttaacattttctaaatgtaaatgggactgacttaaagacaagagcagctttgatttctttctgttgaccaataccacgacaaaaggtattcaaatattatacatgtagatgagttatatataaattcacaaacatctgcaaagtaatgtactgtgatgatttattttacatggtttacatgtatttctacaaaataatcacggagtttataaacttggaaaaatGTTCCATTGTCAAAATATGTACAACAATGGTTTGACAAA-ATCTTCAAGCTTATTCGATCT--TT--GAGCAATCAA--TTGAACTAATATGAGAA-GGAC---AAACACTCGTTACCCACTC-CCCCTTACG--ATTGA----AGACTTCGAAGT-TCGAGCAAA--AACT-T-CTAGTTTTTTGTGCACTTTTGCCCCCCACCCCTCCCT----TTTTCCACACACTTTCCAGG-ATGTTGAAGTTTAGC-CTTATTTAGA-----TATTAAATTTCT--ATT
gi|6 : aaaaaattaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctatgaaaacgttaaggggttgttctttctaaaatttaaacataaaacccccaaattgcatgatttttttatgataaccaatacgtaagaaattcattcgtcgtaaaaatggcaagaaatatgaaaaggttattcaacaaaagtactgatGTTCC-TTGTCAAAATATGTACAGCAATGG-TTGACAAA-ATCTTCAAGCTTACTCGATCTGCTTGTGAGC-ATCAA--CTGAGCTAAAATGAAGA-GGAC---AAAAACT--TTTCCCA-TC-TCCTCTAGATTTTTTA----AAATTTTGAAGTATCGAGTAAA--AA-T-T-CTAGTTTctttt
gi|7 : tacgaaagccagctgagctcatttttgaaaaaaataaaaataaaattaactcgttataacgattacttatctcgttattaaacgagttatatctcgataaacgagttagggtatatgagaacgttaaggccttttctctcaaaattcaaacagaacattttgaatttttgagccacaattactgttttttttataacaattacgtaaaatttattgtcgtaacaaatgactagaaaattctcaaagaaatgaataaggtgacatcttatttcttttattcaacaaaaagttatgaata-GT-CAA-TCCATCAAG--ACATGATGCAG-TGTTTCA-TGA--AG--ATATGCCA-GTGGCAGGC-AG-ATATTT-G-TATG-GCAAAAAAA--TAT--AC-GAG-ATGTAATT--TTTT--TAATTTCATACTCT--------------TATGTA-TTTCT----TTTCTAAGA-------CTAG-TGC-AGGTGCAGGCTGACC--TAGCT-AAAAGCAGCA-TGAATTTATTTCTGTTGGCC-ACTATCACAAAAA--AAAGTATCGAAATAT-T-T-----CAAATAATTTATATACATGTATAAACTTACA-ACCATCTGTAA-ACTGA-TGAACTTTG-------G-------------------Tactgcgactt
gi|8 : acaaacacacaatccaggatgatgaaGTTCCATTGTCAAAATATGTACAgcattatatttttataaagtgtacatat
blockSeqs : A ATGGTTTGACAAA GC TG A . T . . C C . CTAGATT . A . C C T T CCCACCCCTCCCTTTTTCCA C . A A . . TC C GCC C T CG AT G A CTTGAC T G . ACC T . A T T C A GTACAA T . . . A G A . AGGTATATA TGT G . . T . T A TTT . C C AT C TA T AA C AT . GTTAACATTTTC . TA . . . C . CAA ATGTAGA T TATATACATG . . . ATGATTTATTTTACATGGTTTACATGTATTTCTAC A A . A G AAAA . T TAACGT T A ACATGTACATGTAC T A . . T A T . . . C TT
blockSeqs : A ATGGTTGACAAA GC TG A . T . . C C . CTAGATT . A . . . . T CCCCCCCCCCCCCCCTTC C . A A . . TT C . T . CG A G A CTT . G . AC T . A T . C A GCT . . . . T . . . AGATATG TTA . . . . . . A TT . . C . . TC T A . AT . TTTCTAAGAC . . . . . C . CAA TATACA T TATATA . . . GTGATTTATTTTACATGTATTTCTAC A A . A T AATA . T . G A ACTA T A . . T A . . . . C T
blockSeqs : A ATGGTTGACAAA . G A . T . . C . . TTACG . . . . . . . C C . . A . . A A . C A T . . . . C . . . TGATA GT . . . . . . A TT . . C . . C T A . A . GTTA . . . . . T . GAA TATACA C TATA . . . ATTCTAC . . . . . . . T . . . AC . . . . T . . . . . C T
blockSeqs : A GTCAAAC . . . . T . . . . . TACA . . . . . . . . . . . . . . . . . . . . . . . T . . . . . T . . . T . TTA . . . . . . . . TT . . . . .
blockSeqs : . . . . . . . . . . . . TC . . . . . . .
blockSeqs : .
blockSeqCons : ATGGTTGACAAA** G* ** *** CTACGTC **** ** ** GATA******* TT* T* A* AT ** CAA TGTAA** TATA******
originalCons : GTTCCATTGTCAAAATATGTACAACAATGG-TTGACAAA-ATCTTCAAGCTTACTCGATCT--TTG-GAGCAATCAA--CTGAACTAAAATGAGAA-GGAC---AAAAACTCGTTACCCACTC-CCCTCTACATTATTTA----AGATTTCGAAGTATCGAGTAAA--AA-T-T-CTAGTTTTTTGTGCTCTTTTGCCCCC--CCCCCCCCT----TTC----CACACTTTCCAGG-ATGTTGAAGTTTAGC-CTTACTTAGA-----TATTAAATTTCT--CTTATATTTT---TGCCCTGTCCG-AGTATTACTGGACAATTGGTAAACTCAACTT---TTCTCATAAGGACT-GCG-CCCCCACCCACCT-TCACTTTGAAAAACA-GTAAGTACATTGTAC-GCGACCG-CT----T-GT-CAA-TTCACCAAT--ATATGAT-CAA-CCATTCA-TGA--AG--ATATGCCATGTAACAG-C-AG-ATATTT-G-TCTG-GCAAAGAAAATTATT-AC-TGC-ATGTACTTCGTTTT--CAGTTT-ATGCCTTCAATTAC-AAA-AATATGTA-TCTCT----NTT-----A-------CTAAATGT-AAATGCGGGCTGACT--AAGAC-AAGAGCAGCT-TTGATTTCTTTCTGTTGACC-AATACCACGACAA--AAGGTATTCAAATAT-TATACATGTAGATAAGTTATATA----TATAAACTCACA-AACATCTGCAA-AGTAA-TGTACTGTG-------A-------------------TTCTAC---------------------AAAATAATCACGGAGTTTATAA--ACTTGGAAAAATCTAGATT-AA-A-CATTTT-CAGTTTCTTG------TACTTATGATTTTTCTTTTATTTTCTTAAGTAC-----CATG-ACATGTAATTCTAAACT--GCT---ACACTTGATTTAAAGA-TTTCAGG-AACAA-GAGAAGGTCCTATAA-CGGTTCCGTAAGATACGTC-TTTGTAATGA
finalCons : GTTCCATTGTCAAAATATGTACAACAATGGTTGACAAA--ATCTTCAAGCTTACTCGATCT--TTGG-AGCAATCAA--CTGAACTAAAATGAGAA-GGAC---AAAAACTCGTTACCCACTC-CCCTCTACGTCATTTA----AGATTTCGAAGTATCGAGTAAA--AA-T-T-CTAGTTTTTTGTGCTCTTTTGCCCCC--CCCCCCCCT----TTC----CACACTTTCCAGG-ATGTTGAAGTTTAGC-CTTACTTAGA-----TATTAAATTTCT--CTTATATTTT---TGCCCTGTCCG-AGTATTACTGGACAATTGGTAAACTCAACTT---TTCTCATAAGGACT-GCG-CCCCCACCCACCT-TCACTTTGAAAAACA-GTAAGTACATTGTAC-GCGACCG-CT----T-GT-CAA-TTCACCAAT--ATATGAT-CAA-CCATTCA-TGAGATA-------CCATGTAACAG-C-AG-ATATTT-G-TCTG-GCAAAGAAAATTATT-AC-TGC-ATGTACTTCGTTTT--CAGTTT-ATGCCTT-AATTACA-AA-AATATGTA-TCTCT----NTT-----A-------CTAAATGT-AAATGCGGGCTGACT--AAGAC-AAGAGCAGCT-TTGATTTCTTTCTGTTGACC-AATACCACGACAA--AAGGTATTCAAATATTGTAA--TGTAGATAAGTTATA------TATAAACTCACA-AACATCTGCAA-AGTAA-TGTACTGTG-------A-------------------TTCTAC---------------------AAAATAATCACGGAGTTTATAA--ACTTGGAAAAATCTAGATT-AA-A-CATTTT-CAGTTTCTTG------TACTTATGATTTTTCTTTTATTTTCTTAAGTAC-----CATG-ACATGTAATTCTAAACT--GCT---ACACTTGATTTAAAGA-TTTCAGG-AACAA-GAGAAGGTCCTATAA-CGGTTCCGTAAGATACGTC-TTTGTAATGA
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GAAAAACATTAAGGGGGTTTTCTCTTAAAATTTAAACAGAATAATTTGAAATAAATTACGTGATTTTTTTTATGAAAACGATTACGTAAGAAATTTTATTCGTCGTAAAACTGGTTAGAAAATGTTATTTTCCAGCTCCAAAGAAATGAAAAGGTGACGATCTATTTCTTTTATTCAACAAAGT
Unaligned ( gi|10 ): TACGAAAGCTGGCTGGGCTCATTTTTTGAAAAATAAAAAAAAAATACCTCGTTATAATGAGTTAGTATATCTCGTTATAACGAGTTAGT
Unaligned ( gi|11 ): ATGCGTCGTAAAAATGACAAAAACTGTTATTTTTGAGCTCCTAACAATTGAATAAGTGACGAT
Unaligned ( gi|12 ): GTACGAAAGCCAACTGGGCTCATTTTGGAAAAAAATAAATAACTAGTTAGTAAA
Unaligned ( gi|13 ): TACGAAAGCTGGCTGGGCTCATTTTTGGAAAAATAAAA
Unaligned ( gi|14 ): AAGTTGGCTGGGTTCATTTTTGTTTTAAAAAAAAAAAA
Unaligned ( gi|15 ): GTACGAAAGGCGGCTGAGCTCATTTTCGAAAAAAA
Unaligned ( gi|16 ): TACGAAAGCCGTCTGAGCTCATTTTTGAAAAAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333333333 11 22 111 1 3333333 1111 1 1 44444444444444444 2222 1 1 22222 111 222 1 2 1 11 2 222222 2 1 222 33 1 2 2 1 444444444 11 666666666666 1 1 11 22 11 55555555555555555555555 11 11 33333333333 222222222222222222222222222222222222222222222222222222 11 222222 1 222222 55555555555555 11 111 1 1 1 1 11
lowQualScore : 5 55555555555555 88 22 7 99 3 6 111 6 0 6 4444444 4444 5 99 3 6 00000000000000000 0 0 1111 2 0 2 3 0 0 55555 44 444 333 2 7 3 3 99 3 7 888888 7 3 3 000 77 3 3 3 0 2 3 777777777 8 8 11 9 8 8 8 333333333333 666 8 8 8 8 8 6 0 3 0 8 8 8 3 0 11 8 44 1 33 8 11 8 77777777777777777777777 8 11 8 8 0 8 3 11 0 666 33333333333 0 8 8 8 8 6 000000000000000000000000000000000000000000000000000000 3 3 33 3 2 111111 0 3 888888 9 3 99999999999999 3 3 33 777 3 3 0 0 0 0 2 33
lowQualScore : . .............. .. .. . .. . . ... . . . ....... .... . .. . . ................. . . .... . . . . . . ..... .. ... ... . . . . .. . . ...... . . . ... .. . . . . . . ......... . . .. . . . . ............ ... . . . . . . . . . . . . . . .. . .. . .. . .. . ....................... . .. . . . . . .. . ... ........... . . . . . . ...................................................... . . .. . . ...... . . ...... . . .............. . . .. ... . . . . . . . ..
lowQualScore : 0 55555555555555 33 77 3 22 5 7 777 7 8 7 2222222 2222 5 22 3 7 22222222222222222 2 8 2222 5 0 5 2 0 2 00000 55 000 333 0 3 3 3 33 3 3 000000 3 3 3 777 00 3 7 7 0 5 2 555555555 0 0 00 0 0 0 0 888888888888 666 0 0 0 0 0 0 8 8 6 0 0 0 2 8 00 0 88 0 66 0 44 0 88888888888888888888888 0 00 0 0 8 0 2 00 8 444 88888888888 8 0 0 0 0 7 555555555555555555555555555555555555555555555555555555 2 2 88 2 5 000000 0 2 888888 2 2 22222222222222 2 2 88 555 2 2 0 0 0 0 5 22
consensus : GTTCCATTGTCAAAATATGTACAACAATGG-TTGACAAA-ATCTTCAAGCTTACTCGATCT--TTG-GAGCAATCAA--CTGAACTAAAATGAGAA-GGAC---AAAAACTCGTTACCCACTC-CCCTCTACATTATTTA----AGATTTCGAAGTATCGAGTAAA--AA-T-TCTAGTTTTTTGTGCTCTTTTG----CCCCC--CCCCCCCCTTTC----CACACTTTCCAGG-ATGTTGAAGTTTAGC-CTTACTTAGA-----TATTAAATTTCT--CTTATATTTT---TGCCCTGT-CG-AGTATTACTGGACAATT-GTAAACTCAACTT---TTCTCATAA-GACT-GCG-CCCCCACCCACC--TCACTTTGAAAAACA-GT-AGTACA-TGTAC-GCGACCG-C-T----TGT-CAA-TTCACCAAT--ATATGAT-CAA-CCATTCA-TGA-G-----ATA-GCCATGTAACAG-C-AG-ATA-TTTG-TCTG-GCAAAGAAAATTATT-AC-TGC-ATGTACTTCGTTTT--CAGTTT-ATGCCTTCAATTAC-AAA-AATATGTA-TCTCT----NTTA-------CTA-----AATGT-AAATGCGGGCTGACT--AAGAC-AAGAGCAGCT-TTGATTTCTTTCTGTTGACC-AATACCACGACAA--AAGGTATTCAAATAT-T----ATACATGTAGATGAGTTATATATA-A-ACTCACA-AACATCTGCAA-AGTAA-TGTACTGTG-------A-------------------TTCTAC---------------------AAAATAATCACGGAGTTTATAA--ACTTGGAAAAATCTAGATT-AA-A-CATTTT-CAGTTTCTTG------TACTTATGATTTTTCTTTTATTTTCTTAAGTAC-----CATG-ACATGTAATTCTAAACT--GCT---ACACTTGATTTAAAGA-TTTCAGG-AACAA-GAGAAGGTCCTATAA-CGGTTCCGTAAGATACGTC-TTTGTAATGA
Reference ( family-6165 ) : GTTCCATTGTCAAAATATGTACAACAATGG-TTGACAAA-ATCTTCAAGCTTACTCGATCT--TTG-GAGCAATCAA--CTGAACTAAAATGAGAA-GGAC---AAAAACTCGTTACCCACTC-CCCTCTACGTCATTTA----AGATTTCGAAGTATCGAGTAAA--AA-T-TCTAGTTTTTTGTGCTCTTTTG----CCCCC--CCCCCCCCTTTC----CACACTTTCCAGG-ATGTTGAAGTTTAGC-CTTACTTAGA-----TATTAAATTTCT--CTTATATTTT---TGCCCTGTCCG-AGTATTACTGGACAATTGGTAAACTCAACTT---TTCTCATAAGGACT-GCG-CCCCCACCCACCT-TCACTTTGAAAAACA-GTAAGTACATTGTAC-GCGACCG-C-T----TGT-CAA-TTCACCAAT--ATATGAT-CAA-CCATTCA-TGA-G-----ATA--CCATGTAACAG-C-AG-ATA-TTTG-TCTG-GCAAAGAAAATTATT-AC-TGC-ATGTACTTCGTTTT--CAGTTT-ATGCCTT-AATTAC-AAA-AATATGTA-TCTCT----NTTA-------CTA-----AATGT-AAATGCGGGCTGACT--AAGAC-AAGAGCAGCT-TTGATTTCTTTCTGTTGACC-AATACCACGACAA--AAGGTATTCAAATAT-T----GTA-ATGTAGATAAGTTATATATA-A-ACTCACA-AACATCTGCAA-AGTAA-TGTACTGTG-------A-------------------TTCTAC---------------------AAAATAATCACGGAGTTTATAA--ACTTGGAAAAATCTAGATT-AA-A-CATTTT-CAGTTTCTTG------TACTTATGATTTTTCTTTTATTTTCTTAAGTAC-----CATG-ACATGTAATTCTAAACT--GCT---ACACTTGATTTAAAGA-TTTCAGG-AACAA-GAGAAGGTCCTATAA-CGGTTCCGTAAGATACGTC-TTTGTAATGA
gi|1 : TCCATTGTCAAAATATGTAAAACA---------------TCTTTCAGACTACTCGATCT--TTG-AGGAAATCAAATCTGAACATAAATGAGCATGGACTTCAAAAA-TCGTTACCCACTCTCCCTATACA--ATTTACACGATATTTCAAATTA--AGGTAAAGTAA-T-TCTAGTTTTTGGTGCTC-----------------CCCCCCCTTTC----CA-ACTTTCCAGGAATGCTGAAGTTT-GCACTTACTTAGATTTTTTTTTAATTTTCTTCTTTATATTTT---TG-CCTGTCCGCAGTATT-CTGGACAATTGGTAA--TCAA------TTCTCATAAGGACTAGCG--CCCCACCCACCTATCACTTTTGAAAATACGTAAATACATTGTAC-G-G--CGTT-T----TGTACAATTTCACAAATTAATATGAT-CAA-CCATTCATTGA-ACAGT-ATAGGCCATGTAACAG-CGAGCATA-TTTGCTCTGAGCAAAGAATGTTA-T-ACTTGC-ATGTACTTTG-TTT--CTGTTT-ATCCCTTCAAATAC--AA-ACTATGTAGTCTTCATAGTTTAT------TTA-----AATGTAAAATGCGGGCTGACT--AAGACAAAGAGCCGCTATTGACTTCTTTCTGTCGACCAAATACCACGACAAATAAGGTA-TCA-------------A-CTGTAGATGAGTTATATATA-A-ACTCACACAACATCTGCAATAGTAGCTGTACTGTG-------A-------------------T
gi|1 : taaggcgttttacctcttcccaaattcaacagacaccaatttgaaattcttgaatgttcccccaaattcacatgattttttttatgattcacgatttaaaatggctagaaatgttattttccagcttcaaagaaatgcaaaagatttaaggtgacgatcgttttcttacttatattcaacaaagtactgaatagtgtaaA-TGTATCGTG----------------------------TCGAC---------------------AAAATATCCACGGGTTTTACAACTGCTTGGAAAAATCTAGATT-AA-AGCATTTTTCAGTT-CTGG------TACTTATGATTTTTTTTTTATTTCCTTAAGTAT-----CATG-----GTAATTCTAAACTTAGCTTACATATTTGA-TTAAAGA-TTTCAGGAAACAATGAGAAGGTCCTATAATTGGTTCCGTAAGATA-GTC--TTGTAATGAgattatattttcaatggtttatatgtatcgtgtcgacaaaatatccacgggttttacaactgcttggaaaaatctagattaaagcatttttcagttctggtacttatgattttttttttatttccttaagtatcatggtaattctaaacttagcttacatatttgattaaagatttcaggaaacaatgagaaggtcctataattggttccgtaagatagtcttgtaatgatttag
gi|2 : taaggcgttttacctcttcccaaattcaacagacaccaatttgaaattcttgaatgttcccccaaattcacatgattttttttatgattcacgatttaaaatggctagaaatgttattttccagcttcaaagaaatgcaaaagatttaaggtgacgatcgttttcttacttatattcaacaaagtactgaatagtgtaatccattgtcaaaatatgtaaaacatctttcagactactcgatctttgaggaaatcaaatctgaacataaatgagcatggacttcaaaaatcgttacccactctccctatacaatttacacgatatttcaaattaaggtaaagtaattctagtttttggtgctcccccccctttccaactttccaggaatgctgaagtttgcacttacttagatttttttttaattttcttctttatatttttgcctgtccgcagtattctggacaattggtaatcaattctcataaggactagcgccccacccacctatcacttttgaaaatacgtaaatacattgtacggcgttttgtacaatttcacaaattaatatgatcaaccattcattgaacagtataggccatgtaacagcgagcatatttgctctgagcaaagaatgttatacttgcatgtactttgtttctgtttatcccttcaaatacaaactatgtagtcttcatagtttatttaaatgtaaaatgcgggctgactaagacaaagagccgctattgacttctttctgtcgaccaaataccacgacaaataaggtatcaactgtagatgagttatatataaactcacacaacatctgcaatagtagctgtactgtgatgattatattttcaatggtttatGTTCCATTGTCAAAATATGTACAACA---------------TCTTCAAGCTTACTCAATCT--TTG--AGCAATCTA--CTGAACTATAATGAGAA-TAAC---AAAAACTCGTTAC-----C-CCCT-TACA--ATTTA----AGATTTCAAAGT-TCGAGTAAA--GATT-TCTAGTGTTTTGTGCTCTTTTGCCCCCCCCC--CCCCCCCCCTTC----CACACTTTCCAGG-ATGTT---GTTTAGC-CTTACTTAGA-----TATCAAATTTCT--CTTGTATTTT---TGCCC-GT-CG-AGTATTATTGGACAATT-GTAAACTCAACTTGACTTCTCATAA-GACT-GCA-CCCCCACCCACC--TCACTTTGAAAAACA-GT-AGTACA-TGTAC-GCGACTG-CTT----TGT-CAA-TTCACCAAT--AAATGAT-CAA-CCATTCA-TGA-AGGTATATA--CCATGTAACAG-C-AG-ATATTTTG-TCTG-GCAAAGAAAATTATT-AC-TGC-ATGTACTTCGTATT--CAGTTT-ATGCTTTAAATTAC-AAACAATATGTA-TCTCT----GTTA--------TA-----AATGT-AAATGCGGGCTGACT--AAGAC-AAGAGCAGCT-TTGATTTCTTTCTGTTGACC-AATACCACGACAA--AAGGTATTCAAATAT-T----ATACATGTAGATAAGTTATATATATACACTCACA-AACATCTGCAA-AATTA-TGTACTGTG-------A-------------------TTCTAC---------------------AAAATAATCACGGAGTTTATAA--ACTTGGAAAAATCTAGATTAAA-A-CATTTT-CAGTTTCTTG------TACTTATGATTTTTCTTTTATTTTTTTAAGTACATGTACATGTACATGTAATTCTAAACT--GCT---ACACTTGATTTAAAGATTTTCAGG-AACAA-AAGAAGGCCCTTTAA-CGGTTCCGTAAGATACGTCTTTTGTAATGAtttag
gi|3 : GTTCCATTGTCAAAACATAT---------G-T---CAAACATCTTCAAGCTTACTCGATCT--TTG--AGCAATCAA--CTGAAC-AAAATGAGAA-GG-C---AAAAACTCGTTACCCACTC-CCCT-----TCATTTA----AGATTTCAAAGT-TCGAGTAAA--GA-TCTCGAGTGTTTTGTGCTC-TTTG----CCC---------------C----CACACTTTCCAGG-ATGTTGAAGTTTAGC-CTTAGTTAGA-----TA-AAAATTTCT--CTTATATTTTGCCTGTCCTGT-CG-AGTATTA-TGGACAATT-GTAAACTCAACTT---T--TCATAA-GACT-GCACCCCCCACCCACC--TCACTTTGAAAAACA-GT-AGTACA-TGTAC-GCGACCG---TACAATGT-CAA-TTCACCAAT--ATATGAT-CAA-CCATT--------------------------CAA-C-AG-ATA-TTTG-TCTG-GAAAAGAAAATTATT-AC-TGC-ATGTACTTCATTTT--CAGTTT-ATGCCTTCAATTACAAAA-AATATGTA-TCTAT-----TTA--------TA-----AATGT-AAATGCGGGCTGATT--ACGAC-AAGAGCAGAT-TTGATT------------CA-AATA----------------ATT---ATATAT----GTA------GATGAGTTAAATATA-A-ACTTACA-AACATCTGTAA-AGTAA-TGTACTGTG-------GTGATTTATTTTACATGTATTTCTAC---------------------AAA--AATC---GAGTTTATAA--ACTTGGAAAAATCTATATT-AATA-CATTTT-CAGTATATTGTAACGTTACTTATCATTTTTCTTTTA-TTTCTAAAGT------------ACATGTAATTCTAAACT--GCT---ACACTTGATTTAAAGA-TTTCAGG-AACAA-GAGATGGTCCTATAA-CGGTTCCGTAAGATACGTC-TTTGTAATG
gi|4 : tttatattgaaaatttaaaacgaaaattGTTCC-TTGTCAAAATATGTACAGCAATGG-TTGACAAA-ATCTTCAAGCTTACTCGATCTGCTTGTGAGC-ATCAA--CTGAGCTAAAATGAAGA-GGAC---AAAAACT--TTTCCCA-TC-TCCTCTAGATTTTTTA----AAATTTTGAAGTATCGAGTAAA--AA-T-TCTAGTTT
gi|4 : taTACTGCGACT----T----TGT-CAA-TTAACCAAT--A-ATGAT-CAAACCATTCA-TAATG-----ATA--CCATTAAACAG-C-AG-ATA-TTTG-TCTTTGCA--GAAAATTATTTAC-TGCCATGTACTTCGTTTTATCAGTTT-ATGCCTC-AATTAC-AAA-AA-ATGTA-TCTCT----GTTAACATTTTCTA-----AATGT-AAATG-GGACTGACTTAAAGAC-AAGAGCAGCT-TTGATTTCTTTCTGTTGACC-AATACCACGACAA--AAGGTATTCAAATAT-T----ATACATGTAGATGAGTTATATATA-A-ATTCACA-AACATCTGCAA-AGTAA-TGTACTGTGATGATTTA-------------------TTTTACATGGTTTACATGTATTTCTACAAAATAATCACGGAGTTTATAA--ACTTGGAAAA----------------ATTTT-CAGTTTCTTG------TACTAATGATTTTTactgcgactttgtcaattaaccaataatgatcaaaccattcataatgataccattaaacagcagatatttgtctttgcagaaaattatttactgccatgtacttcgttttatcagtttatgcctcaattacaaaaaatgtatctctgttaacattttctaaatgtaaatgggactgacttaaagacaagagcagctttgatttctttctgttgaccaataccacgacaaaaggtattcaaatattatacatgtagatgagttatatataaattcacaaacatctgcaaagtaatgtactgtgatgatttattttacatggtttacatgtatttctacaaaataatcacggagtttataaacttggaaaaattttcagtttcttgtactaatgatttttgtaacacttgatttcaagaacaagagaaggtcctatgacggttccgtaagatacgtcttt
gi|4 : tagttccttgtcaaaatatgtacagcaatggttgacaaaatcttcaagcttactcgatctgcttgtgagcatcaactgagctaaaatgaagaggacaaaaacttttcccatctcctctagattttttaaaattttgaagtatcgagtaaaaattctagttTTTCAGTTTCTT--GTAC-----TA-----ATG--ATTTT----T--GTA---ACACTTGATTT---------CAAG-AACAA-GAGAAGGTCCTATGA-CGGTTCCGTAAGATACGTC-TTTgtaacacttgatttcaagaacaagagaaggtcctatgacggttccgtaagatacgtcttt
gi|5 : tagttccttgtcaaaatatgtacagcaatggttgacaaaatcttcaagcttactcgatctgcttgtgagcatcaactgagctaaaatgaagaggacaaaaacttttcccatctcctctagattttttaaaattttgaagtatcgagtaaaaattctagtttactgcgactttgtcaattaaccaataatgatcaaaccattcataatgataccattaaacagcagatatttgtctttgcagaaaattatttactgccatgtacttcgttttatcagtttatgcctcaattacaaaaaatgtatctctgttaacattttctaaatgtaaatgggactgacttaaagacaagagcagctttgatttctttctgttgaccaataccacgacaaaaggtattcaaatattatacatgtagatgagttatatataaattcacaaacatctgcaaagtaatgtactgtgatgatttattttacatggtttacatgtatttctacaaaataatcacggagtttataaacttggaaaaatGTTCCATTGTCAAAATATGTACAACAATGGTTTGACAAA-ATCTTCAAGCTTATTCGATCT--TT--GAGCAATCAA--TTGAACTAATATGAGAA-GGAC---AAACACTCGTTACCCACTC-CCCCTTACG--ATTGA----AGACTTCGAAGT-TCGAGCAAA--AACT-TCTAGTTTTTTGTGCACTTTTG----CCCCCCACCCCTCCCTTTTTCCACACACTTTCCAGG-ATGTTGAAGTTTAGC-CTTATTTAGA-----TATTAAATTTCT--ATT
gi|6 : aaaaaattaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctatgaaaacgttaaggggttgttctttctaaaatttaaacataaaacccccaaattgcatgatttttttatgataaccaatacgtaagaaattcattcgtcgtaaaaatggcaagaaatatgaaaaggttattcaacaaaagtactgatGTTCC-TTGTCAAAATATGTACAGCAATGG-TTGACAAA-ATCTTCAAGCTTACTCGATCTGCTTGTGAGC-ATCAA--CTGAGCTAAAATGAAGA-GGAC---AAAAACT--TTTCCCA-TC-TCCTCTAGATTTTTTA----AAATTTTGAAGTATCGAGTAAA--AA-T-TCTAGTTTctttt
gi|7 : tacgaaagccagctgagctcatttttgaaaaaaataaaaataaaattaactcgttataacgattacttatctcgttattaaacgagttatatctcgataaacgagttagggtatatgagaacgttaaggccttttctctcaaaattcaaacagaacattttgaatttttgagccacaattactgttttttttataacaattacgtaaaatttattgtcgtaacaaatgactagaaaattctcaaagaaatgaataaggtgacatcttatttcttttattcaacaaaaagttatgaataGT-CAA-TCCATCAAG--ACATGATGCAG-TGTTTCA-TGAAG-----ATATGCCA-GTGGCAGGC-AG-ATA-TTTG-TATG-GCAAAAAAA--TA-T-AC-GAG-ATGTAATT--TTTT--TAATTTCATACTCT--------------TATGTA-TTTCT----TTT--------CTAAGACTAGTGC-AGGTGCAGGCTGACC--TAGCT-AAAAGCAGCA-TGAATTTATTTCTGTTGGCC-ACTATCACAAAAA--AAAGTATCGAAATAT-TTCAAATA-ATTTATATA---CATGTATA-A-ACTTACA-ACCATCTGTAA-ACTGA-TGAACTTTG-------G-------------------Tactgcgactt
gi|8 : acaaacacacaatccaggatgatgaaGTTCCATTGTCAAAATATGTACAgcattatatttttataaagtgtacatat
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GAAAAACATTAAGGGGGTTTTCTCTTAAAATTTAAACAGAATAATTTGAAATAAATTACGTGATTTTTTTTATGAAAACGATTACGTAAGAAATTTTATTCGTCGTAAAACTGGTTAGAAAATGTTATTTTCCAGCTCCAAAGAAATGAAAAGGTGACGATCTATTTCTTTTATTCAACAAAGT
Unaligned ( gi|10 ): TACGAAAGCTGGCTGGGCTCATTTTTTGAAAAATAAAAAAAAAATACCTCGTTATAATGAGTTAGTATATCTCGTTATAACGAGTTAGT
Unaligned ( gi|11 ): ATGCGTCGTAAAAATGACAAAAACTGTTATTTTTGAGCTCCTAACAATTGAATAAGTGACGAT
Unaligned ( gi|12 ): GTACGAAAGCCAACTGGGCTCATTTTGGAAAAAAATAAATAACTAGTTAGTAAA
Unaligned ( gi|13 ): TACGAAAGCTGGCTGGGCTCATTTTTGGAAAAATAAAA
Unaligned ( gi|14 ): AAGTTGGCTGGGTTCATTTTTGTTTTAAAAAAAAAAAA
Unaligned ( gi|15 ): GTACGAAAGGCGGCTGAGCTCATTTTCGAAAAAAA
Unaligned ( gi|16 ): TACGAAAGCCGTCTGAGCTCATTTTTGAAAAAA