lowQualScore : 1111 11 333333333333333333 111 111 3333 444 222 111111 22222222 111111 1111111 5555555555555555555 111 2222 111 222222 222222 1111 1 111 11 1111111 1 33 22 88888888888888888888888888888888888 222 11111111 444444444444444444444444444444444444 111 55555555555555555555555555555555555 1 33 1
lowQualScore : 5 5 5 2 4 8888 3 11 1 4 4 55 4 4 8 2 4 666666666666666666 111 4 4 4 4 4 4 4 555 4 9999 4 8 3 4 4 4 4 4 111 8 55 4 8 4 4 4 55 9999 8 1 777 55 111 55 4 4 4 66 777 8 7 4 99 7 55 999999 4 4 4 4 0 00000000 999999 55 444 6666666 55 1111111111111111111 55 3 3 3 55 000 7 3 3 44 6 2222 3 4 4 4 55 5 444 000000 5 888 0 666666 5 2 5 0000 0 333 5 2 5 77 33 8888888 5 3 8888 33 22 5 33 3 66666666666666666666666666666666666 5 77777 8 111 88 4 4 777 22222222 111111111111111111111111111111111111 4 000 1 4 44444444444444444444444444444444444 888 5 6 1 1 00 1 3
lowQualScore : . . . . . .... . .. . . . .. . . . . . .................. ... . . . . . . . ... . .... . . . . . . . . ... . .. . . . . . .. .... . . ... .. ... .. . . . .. ... . . . .. . .. ...... . . . . . ........ ...... .. ... ....... .. ................... .. . . . .. ... . . . .. . .... . . . . .. . ... ...... . ... . ...... . . . .... . ... . . . .. .. ....... . . .... .. .. . .. . ................................... . ..... . ... .. . . ... ........ .................................... . ... . . ................................... ... . . . . .. . .
lowQualScore : 7 7 7 1 4 1111 5 99 9 0 0 55 0 0 0 3 4 222222222222222222 000 0 0 0 0 0 0 0 222 0 5555 0 0 6 0 0 0 0 0 000 0 55 0 7 0 0 4 55 4444 0 1 000 55 999 44 0 0 0 33 000 0 0 7 55 5 55 777777 0 0 0 0 8 00000000 555555 55 222 0000000 55 3333333333333333333 00 6 6 6 00 111 3 6 6 66 7 7777 6 0 0 0 55 0 111 999999 0 888 4 666666 0 5 0 6666 0 888 7 1 7 99 66 1111111 0 3 4444 99 88 0 55 4 00000000000000000000000000000000000 0 00000 9 111 66 4 4 888 66666666 444444444444444444444444444444444444 0 666 0 4 11111111111111111111111111111111111 888 0 3 4 4 77 4 5
consensus : AGGC-A-T-TNATGGCCC--CCTCTTNAAATTT--ACTCATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGTGT-ATAAA-----A-------G----AAAA---A-ATATGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTTG---CCTA-GCAACGC-ATCAA-ACAT-A-T-GAA-CA-ATCA-AA-T--TATT-CATTTACAT-AAA-TAT-TTCAAATGCAA--G----ACTTAAAA-GTCTA---AT--TTTTTT--AACT-TG-A-A-TGATAATAT-TTTA---T-AAATTCCA--AATGGCA--TTN-----TCTT-GCA-T-ATGAT-CAAAA--------TTCAG------AC--T-A-A----G--ACA--TTATT--TAA--AGTAGTTATAATGC--T-C-AT-A--TTTCCA-N-AG-TT-A-CTGCA--C-AAAT--A-CTC-CTTAG-CAACAACCA-AT-AT--TGTGACTATATCTATAATACG-T--ATAT---CG-CA-TGTTATCAA---ATC--A---TC-TGAAATGCA-T----G-AAAA---CC-ATNTGTT-GGTG--ATCT--AAA-----T-G-GG-AAATAAATTA---TA--AGAATTAA-AAAAAAAAAAAAAAA-AA----AAAT-T-CGC-C-----ANA-T--CCGAGA-ATTG--A--ACC-GGG--TACCCTCTTCAT-GC---GAGTCT--G-A---CG-CG------CTA-----C---C---------GA-C-ACGC-CACC-TACTT-C----GC---------C---------TGA-------T---GT-AAATTAT-AAACA-AAA-GTCAAAGTGT
Reference ( gi|4 ) : AGGC-A-T-TAATGACCC--C-TCTTAAAATTT--ACTCATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGTGT-ATAAA-----A-------G----AAAA---A-ATATGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTT----CCTA-GCAACGC-ATCAA-ACAT-A-T-GAA-CA-AT---AA-T--TATT-CATTTGCAT-AAA-TAT-TTCAAATGCAA--G----ACTTAAAA-GTCTA---AT--TTTTTT--AACT-TG-A-A-TGATAATAT-TTTA---T-AAGTTCCA--AATGCCA--TTC-----TCTT-GCA-T-ATGAT-CAAAA--------TTCAG------AC--T-A-A----G--ACA--TTATT--TAA--AGTAGTTATAATGC--T-C-AT-A--TTTCCA-A-AG-TT-A-CTGCA--C-AAAT--T-CTC-CTTAG-CAACAACCA-AT-AT--TGTGACTATATCTATAATACG-T--TTAT---TG-CA-TGTTATCAA---ATC--A---TC-TGAAATGCA-T----G-AAAA---CC-ATTTGTT-GGTG--ATCT--AAA-----T-G-GG-AAATAAATTG---TATTAGAATAAA-AAAAAAAAAAAAAAA-AA----AAAT-T-TGC-C-----AAA-T--CCGTGA-ATTG--A--ACC-GG---TACCTTCTTCAT-GC---GAGTCT--G-A---CG-CT------CTA-----C---C---------AA-C-ACGC-CACC-TACTT-C----GC---------C---------TGA-------T---GT-AAACTGT-AAAC--AAA-GTCAAAGTGT
gi|2 : AGGC-A-T-TAATGGCCC--C-TCT-AAAATTT--A-TCATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGTGT-ATAAA-----A-------G----AAAA---A-ATATGT-AAATTTAC-T-TT-GTTTATCTTTTTTAATATTG-GTTG---CCTA-GCAACAC-ATCAA-ACAT-A-TTGAA-CA-AT---AAAT--TATTTCATTTA-AT-AAA-T-T-TTCAAATGCAA--G----ACTTAAAAAGTCTA---AT--TTTTT---AACT-TG-A-AATGATAATAT-TT-A---T-AAATTCCA--AATTGCA--TTTA----TCTTTGCAAT-ATGATTCAAAA--------TTCAG------AC--T-A-A----GGGACA---------------------GTAATGC--T-C-AT-A--TTTCCA-A-AG----A-CTGCA--C-AAAT--A-CTC-CTTAG-CAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TACTTAT---TGGCA-TGTTATCAA---ATTCAA---TC-TGAAATG-A-T----G-AAAA---CCCATTTGTTTGGTG--ATTC--GAA-----T-G-GGGAAATAAATTA---TA--AGAATTAA-AAAAAAAAAAAA-------------T-TACGC-CGCGGGATA-TTTCCGAGA-ATTGGAA--ACT-GGG--TACCCTCTTCAT-GC---GCGTCTTTG-A---CG-CG------CTA-----C---C---------GA-TTACGC-CACCACACCA-C----AT---------A---------TGACCCTCGTT---GT-AAATTATTAAAC--AAAAGTCAAAGT
gi|1 : gAGGC-A-T-TAA-GACCC--CCTCTTAAAATTTC-ACTCATTCCGTATTTCC--ACTAGTA-T-G-CCACATG-GT-ATAAA-----A-------GT---AAAAC--A-ATA----AA-TTTAC-T-TG-ACT-AGTTTTTG-AATATTGCGTT----GCCATGCAACTCCATCAA-ACAT-A-T-GAA-CA-ATT--AA-TCTTATT-CATTTACAT-AAA-TATGTTCAAATGCAA--GCTAGACTTAAAA-GTCAA---AA--TTTTTT--AACT-TG-A-A-TGATAATATATTTA---TTAAATTCCAT-AATGC-A--TTC-----TCTT-GCA-T-ATGAT-CAAAA--------TTCAGG-----AC--T-A-A----GG-ACA--TTATTATTAATCAGTAGTTATAATGCCCT-C-AT-AAGTTTCCA-A-AT-TT-A-CTGCA--C-AAAA--TACTCTCTTAG-CAACAACCAGAT-AT--TGTCACTATAATCATAATACG-T--T-AT----G-CA-TGTTATCAA---ATCG-A---TCCTGAAATGCAAT----GCAAAA---CC-ATT-GTT-GGTG--ATCT--AAA-----T-G-GGGAAATAAATTGGTCTATTAGAAT-AA-CAGAAAAAAAAAAAA-AA----AAAT-T-CGC-CA----AAA-T--TCA-GACATGA--A--ACC-GG---TGCCTTCTTCATGGC---GAGTCT--G-AC--CG-CTACCTTATTA-----CGCAC---------AA-C-ACAG-CACC-TACTTAC----GC---------C---------TGA-------T---GT-AAACTGTAAAACA-AAA-GTCtg
gi|3 : gaAGGC-A-T-TTATGGCCC--CCTCTTCAAACTT--ACTCATTCC-TATT-CC--TGTAGTAGT-G-C-ACATGTGT-ATAAA-----A-------G----AAAACAAA-ATATGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTTG---CTTA-GCAACGC-ATCAA-ACAT-A-T-GAA-CA-ATCA-AA-T--TATT-CATTTACAT-AGA-TAT-TTCAAATGCAA--G----ACTTAAAA-GTCTA---AAAACATTTT--AACT-AG-A-A-TGATAATAT-TTTAAAAC-AAATGTCA--ATTGGCA--TTA-----TCCT-GCA-T-ATGAT-CAAAA--------TTCAA------AC--T-TTA----G--ACA--TTATC--TAA--AGTTGTTA--ATGC--T-C-AC-A--TTTCCA-T-AG-TT-A-CTTCA--C-AAAT--A-CTC-CTTAG-CAACAACCA-AT-AT--TGTGAATATATCTATAATACG-T--ATAA---CA-CA-TGTTATCAATGGA----A---TC-TGAAATACA-TGGGGG-AAAAACCCC-AGATACT-GGTG--ATCTTAAAG-----T-G-GG-GAA-AAATTG---T
gi|9 : gAGGC-AAT-TAATGGCCC----TCTTAACATTT--ACTCATTC---ATT-CC--AGTAG-AG--G-C-ACATGTGTTATAAA-----C-------G----AAAA---ACAT-TGT-A--TTGAC-T-TT-GCT-ATCTTT---AAGATTG-GTTGGCGCCTA-GCA---C-ATCGACAAAA-A-T-GAA-CAGAT---AAAT--TATT-CATT-ACATTAAA-TAT-TCCAAATGCAA--G----ACTTAAAA-GTCTA---AT--TTTTTA--AACT-TG-ATA-TG-TAATA--TTTA---T-AAATTCCA--AATGGCA--TTC-----T-TT-GCA-T-ATGAT-C-AAA--------TTCAG------AC--T-A-A----G--ACA--TT-CT--TAA----TAGAT-TAATGC--T-C-AT-A--TTTCCAGA-AG-TT-A-CTGCA--C-AAAT--gggttttttttaaatcgccctcaacaggatttgaaccgtgggtctactgcttgtgaacctgagcacgctacctattgctccatcacttcaattacgtcaatttccggaaattataaaacaaaatgtcaaat
gi|6 : gAGGC-A-T-TTATGACCCAAC-TCTTTCAAATT--ACTC-CTCC-TATT-CT--ACTAGTGGT-GGC-ACATG------AAC-----A-------A----AATG---T-ACATGT-CA-TTTAC-T-TT-GCT-ATCTTT---GATAT-G-GTTTTG-CCCA-GCAACGCGATGAA-ACAT-A-T-GAAACA-ATTACAA-T--TGTT-TATTTACAT-AAT-TTT-TTCAA-TG-AA--G----ACTTAAAA-GTATATATAT--TCTTTTTAAACT-AG-A-A-TGATACTAT-TTTA---T-AAATT-CA--AATGGCAATTTA-----TCCT-GCA-T-ATGAT-CAAAATGTTTTTTTTTGGGAAAAAAA--T-A-ATCTTG--ACA--TTATTC-TAA--ATTGGT--TAATGT--T-C-AT-A--TTTCCA-T-AG-TC-A-TTGCA--TAAAAT--A-TTT-CTTAG-CAACAACCA-AT-A---TGTGAA-ATATCTATAGTGCG-T--ATATAAAAA-CA-TGTTATCAA---AAT--AAATTC-TGAAATAC-------G-AAAA---
gi|14 : AGGC-G-T-TTATGACCC--CCTCTTTAAATGT--ACTTATTCC-TATT-CC--ATTAGTCGT-G-C-AAAAGTGT-ATAAA-----ATATAAATGC---AAAA---A-ATACGT-AA-TTTACTT-TT-GAT-ATCTTTT--AGTATTG-GCTA---CCTA-GCAACGC-ATAAA-ACAT-A-T-GAA-CA-ATCA-AA-T--GATT-CATTTTCAT-AAA-TAa
gi|17 : AGGCCA-TCTAATG--CC--C-TCTTAAAATTTTCACTC-TTCC-TATT-TCCGAGT-GTAGA-G-TTACATGTGT-ATAAA-----A-------GAAAAAAAA---A-AAATGT-AA-TTTAC-TCTT-GCA-CTCTTTT--AATATTG-GTTG---CCTA-GCAACGC-AT-AA-ACA
gi|11 : CC--C-TCTTCAAATTT--ACACAATGC-TATA-CC--AGTAGTAAT-G-C-ACAGATGT-ATAAA-----T-------GA---AAAA---A-ATATGT-AA-TTTAC-T-TT-CAT-GTATTTT--TATGTTG-GTTG---CCTA-GCAACGC-ATCAA-CCAT-G-T-TCA-CA-ATTA-AG-T--TATT-CATTTTCAT-AAT-TAT-TTGAAATGCAA--
gi|23 : gaggtctttatgtaccctccaCATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGTtattatcgaataaatgttttatatttacagatgactaagttaaaccatataccgtaatctaaaacagaag
gi|8 : TTCG-TATT-CC--AGTATTAGTTG-C-ACGTGC-T-ATAAATAAAGA-------A----AAAA---A-ATATGTTAA-TTTAC-T-TTTGAT-ATCTTT---AATATTG-TTG----CCTA-GCAACGC-ATCAT-ACAT-AAT-GAA-CA-ATCA-AA-T--TTTG-CATTTTCAT-AAA-TAT-TTCAAATGAAA--G----ACTGAATG-GCCTA---AT--TTTTTA--AACT-AG-A-A-TGA-AAAAC-TTTA---T-
gi|5 : t----AAAA---A-ATATGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTTG---CCTA-CCAACGC-ATCAA-ACAT-A-T-TTA-CA-ATC--AA-T--TATT-CATTTACAT-AAA-TAT-TTCAAATGCAA--G----ACTTAAAAAGTCTA---AT--TTTTT---AACT-TG-A-A-TGATAATAT-TTTA---T-AAATTCCA--AATGGCA--TTA-----TCTT-GCA-T-ATGAT-CAAAA--------TTCAA------ACAAT-A-A----G--ACA--TTATT--TAA---GTAGTTA-AATGC--T-C-AT-A--TTTCCA-T-AG-TT-A-CTGCA--C-AAAT--A-CTC-CTTAG-CAACAACCA-AT-AT--TGTGACTATATCTATAATACG-T--ATAT---CA-CA-TGTTATCAA---ATC--AA--TC-TGAAATGCA-T----G-AAAAA--CC-ATATGCT-GGTG--ATCT--AAAAGAAAG-G-GG-AAGTAAATTA---TA--AGAATTTA-AAA----AAAAAAAA------------T-TCCGC-----AGATT--TCAGGA-CTTG--A--ACCGGG---GACTCTCAGCAT-GT---GAGCCT--G-C---CGACA------CTA-----C---T---------TA-CTACGC-CACC-T-TTT-C----AT---------CTATAAATTATGA-------T---GT-AAATTAC-ATACA-AAA-GTCAAAcattactctaagactgaaaagtctaatttttttaaatagaaatgataatacttatcaactttaattaattcaatttgcatattctgcatttgatcaaatgcaacttatacattttatttaaatgctatattttaatagtttacttcacccaaatatccattttgccaacaaccaatgtg
gi|13 : A-ACATCA-T-GAA-CA-ATT--AA-A--TATT-C-TTTACAT-AAAATAT-TTCAAATGCAGCTG----AC-TAAAA-GTA-A---AT--TTTTTTAGAACT-T--A-A-TGATCA-AT-TTTA---T-AAATT-CA--AATGGC----TA-----TCTT-GCC-A-ATGAG-CACAATG------TTCAGA-----AC--T-A-A----G--AC---------------AGTA--TATG--GC--T-CAATAA--TTTCCC-A-AG-TT-T-CTGC---C-AAAT--A-CTC-CTa
gi|8 : AA--G----ACTGAAAA-GTCTA---AT--TTTTTT--AAAT-AGAA-A-TGATAATA--CTTA---TCAACTTTAATTAATTCAA--TTTGCATATTCT-GCA-T-TTGAT-C-AAA--------TGCA-------AC--T-T-A----T--ACATTTTATT--TA------------AATGC--T---AT-A--TTTTAA-T-AGTTT-A-CTTCACCC-AAATA-T-CCA-TTTTGCCAACAACCA-AT-GT--
gi|7 : tttcgtattccagtattagttgcacgtgctataaataaagaaaaaaaatatgttaatttacttttgatatctttaatattgttgcctagcaacgcatcatacataatgaacaatcaaattttgcattttcataaatatttcaaatgaaagactgaatggcctaattttttaaactagaatgaaaaactttatcattactctA-GTCAA---AT--TTTTT---AACTCTG-A-A-TGAT--CAT-TTTA---T-AAATTC-A--AATGCCA--TTC-----TCTT-GCA-T-ATGAT-CAAAA--------TTCAG------AC--T-A-A----GTTACA--TTATTTATAA--AGTAGTTATAATGC--T-C-AT-A---TTCCA-A-AGTTT-ACCTGCA--CAAAAT--A-CTC-CTTAG-CAATAACCA-AT-ATTCTGTGACTATATCTATAATACGTT--TTAT---TG-CA-TGTTATCAA---ATCG-A---TC-TGAAATGCA-T----G-AAAA---CC-ATTTTTT-GGTGTAATCTA-AAA-----TGG-GG-AAATAAATTG---CATTAG-----A-AATAAAAAAAAAAAA-AA----AAAT-T-CGC-C-----A------C----A-ATT------------------------CAT-GC---GAGTCT--G-ACTGCG-CTAC----CTATTACGC---C---------AA-C-ACACGCACC-TACTT-C----GC---------C---------TGA-------T---GTAAAACTGT-AAAC--AAATGTCAAAGTGg
gi|10 : --AATGGCA--TCA-----TCTT-GCA-TTATGAT-CAAA---------TTCAA------AC--TTA-A----G--ACA--TTA-------------------ATGC--T-C-AT-A--TTTCCA-T-AG-TT-A-CTGCA--C-AAAT--A-CTC-CTTAG-CAACAACCA-AT-AT--TGTGACTATATCTATAATACG-T--ATAT---TA-CA-TGTTATCAA---ATCA-A---TC-TGAAATGCA-T----GAAAAA---CC-ATATGTT-GGTG--ATCT--AAA-----A-GAGG-AAATAAATTA---TA--AGAAT--------TAAAAAAAAAA-AA----AAAT-TCTGC-C-----GAA-A--ACGAGA-ATTG--A--ACT-GGGTATAC---CTGCAT-GT---GAGCCTGCG-A---CG---------CTA-----C---C---------CATT-ACGC-CACC--ACAT-C----AC---------T---------T
gi|20 : TAATGC--TTC-AT-A--TTTCCA-ATAG-TTTA-CTTCA--C-AAATACTACTC-CATTG-CAACAACCA-ATGGT--TGTGA
gi|12 : t--C-AAAC--T-CT----TAA-GAACCACCA-AT-AT--TGTGACTATATCTTTAAT--G-G--ATAT---TGGCAATGTTATCAA---ATC--A---TC-TGAAATG-A-T----G-AAA----CC-ATTTTTT-GGTG--AT-T--AAA-----T-G-GGGAAATAAAT-A---TAAGAGATTAAAGAAAAAAAAAAAAAGATAACGGTAGATAT-T---C-----AAA---------G-ATTG--ATCGCC-GG---TACCGTCT--AT-GCACGAAATCT--GAA---CG-TG------CTA-----C---CGAT------AG-C-GCAC-CACA-T-CTT-CACCAAC---------C---------TG--------T---GT-AAA
gi|16 : aaac-GG-AAATAAATTA---TA--AGAATTAA-AAAA------------------AAAT-TACAC-T-----ACT-T--CCGAGA-TGTG--A--ACCAGG---TACCCTCTTCAT-GC---AAGTCT--G-A---CG-CG------CTA-----C---C---------GATT-ACGC-CACCATGC---C----GCATACGAACGC---------CGT-------T---GT-AAATTAT-AAACA-AAA-GTCTAAGTGTt
gi|15 : -AAATAAATTA---TA--AGAATTTA-AAAAAAAAATAATAA--------------TGC-T-----ACA-T--ACGAGA-ATTG--A--ACC-GGG--TACACTCTTCAT-GC---AAGTCT--G-A---CG-CG------CTA-----C---CTATTACGCCAC-C-ACGC-CACC-TAATT-CTT--GC--------------------GA-------T---GT-AAATTAT-AAACA-AAA-GTC-AAGTGT
gi|22 : --ACC-GGG--TACCTTCTTCAT-GC---GAGTCT--G-A---CG-AG------CTA-----C---C---------AATT-ACGC-
gi|21 : -----C---C---------AC-C-ACGC-CACC-TACTT-C----TC---------C----------AA-------TACAGT-AAA-TAT-AAACAAAAA-GTCAAAGTGT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): AAAAAAGGAAATATAAAATGATAAAAAAAAAACAGTTTCTGCAAGCAGGATTTGAACCCGGGTCGTCTACCTCGCGCAACGGCGACGTTACCTATTACGCTA
Unaligned ( gi|19 ): AGAATTTGAACCAACAACCTACTGCTTGAAAGATCAATGACGCTATTACCATTACGCATCATTTCGCTTGCAATGCATTAATATTTTATAAACAATC
Alignments
lowQualScore : 11 111111111111111 111 111 11111111111 11111111 11111111 1111111 3333333333333333333 1 2222222 22 1 22222 1 11111 2222222222222 44444444444444444444444444444444444 444444444444444444444444444444444444444444444444444 1
lowQualScore : 5 5 5 1 4 88 1 00 0 3 3 55 3 3 7 1 4 999999999999999 333 3 7777 3 3 3 3 3 3 88 3 777777 7 3 7 3 3 6 3 3 3 3 3 4 55 8888 4 3 555 666 0 444 44 3 3 3 55555555555 666 3 6 3 55 44 3 3 3 3 88888888 66666666 88 3 3333333 55 7777777777777777777 44 3 3 3 44 777 6 3 3 44 0 3 555 555 3 3 55 4 888 1111111 4 777 33 777 4 55 9999 3 777 5 5 5 66 44444 5 4 4 00000 66 4 4 4 2 444 8 4 5555555555555 1 1 55 3 777 0 3 2 3 666 55 444 3 7 55555555555555555555555555555555555 3 999 3 555555555555555555555555555555555555555555555555555 0 3 4 4 0
lowQualScore : . . . . . .. . .. . . . .. . . . . . ............... ... . .... . . . . . . .. . ...... . . . . . . . . . . . . .. .... . . ... ... . ... .. . . . ........... ... . . . .. .. . . . . ........ ........ .. . ....... .. ................... .. . . . .. ... . . . .. . . ... ... . . .. . ... ....... . ... .. ... . .. .... . ... . . . .. ..... . . . ..... .. . . . . ... . . ............. . . .. . ... . . . . ... .. ... . . ................................... . ... . ................................................... . . . . .
lowQualScore : 0 0 0 0 2 33 0 66 8 6 6 00 6 6 3 3 0 555555555555555 666 6 7777 6 6 6 6 6 6 66 6 444444 3 3 3 6 6 4 6 6 6 6 6 0 00 5555 0 6 222 444 2 666 11 6 6 6 00000000000 444 6 6 6 00 66 6 6 6 6 22222222 66666666 66 6 6666666 00 9999999999999999999 66 3 3 3 66 777 7 3 3 66 0 3 888 888 6 6 00 4 333 0000000 4 888 99 888 4 66 4444 3 888 0 9 0 99 44444 0 4 0 00000 11 4 8 4 0 333 9 4 4444444444444 9 0 55 6 888 5 6 0 6 444 00 999 6 3 00000000000000000000000000000000000 3 888 6 444444444444444444444444444444444444444444444444444 4 3 4 4 4
consensus : AGGC-A-T-TAATGGCCCC-CTCTTNAAATTT--ACTCATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGTGT-ATAAA-----A-------G-AAAA---A-ATA----TGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTT--G---CCTAGCAACGC-ATCAA-ACAT-AT-GAA-CAATCA-A-ATTATT-CATTTACAT-AAA-TAT-TTCAAATGCAA--G----ACTT-AAAA-GTCT--A---ATTTTTTT--AACT-TG-A-A-TGATAATA---------T-TTT---A-TAAATTCCA-AATGGCA--TTN-TCTT-GCA-T-ATGAT-CAAAA--------TTCA-G------AC--T-AA----G--ACA--TTAT--T--TAA--AGTAGTTATAATG--CT-C-AT-A--TTTCCA-A-AG-TT-A-CTGCA--C-AAATACTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TA--TAT---C-G-C-ATGTTATCAA---ATC--A---T-CTGAAATGC-AT----G-AAAA---CC-ATNTGTT-GGTG--ATCT-----AAATGG-GG-AAATAAAT-----TATA--AGA-ATTAAAAA-AAAAAAAAAAAAAAAAATT-C-GCC-----ANA-T--CCGAGAATTG--AAC-C--GGGTACCCT-CTTCAT-GC---GAGTCT--G-A-C-G-CGCTA---------C-----------CGAT--------C-ACGC-CACC-TACTT-C----GC---------C---------TGA-------T---GT----------AAATTAT-AAAC-AAAA-GTCAAAGTGT
Reference ( family-616 ) : AGGC-A-T-TNATGGCCCC-CTCTTNAAATTT--ACTCATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGTGT-ATAAA-----A-------G-AAAA---A-ATA----TGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTT--G---CCTAGCAACGC-ATCAA-ACAT-AT-GAA-CAATCA-A-ATTATT-CATTTACAT-AAA-TAT-TTCAAATGCAA--G----ACTT-AAAA-GTCT--A---ATTTTTTT--AACT-TG-A-A-TGATAATA---------T-TTT---A-TAAATTCCA-AATGGCA--TTN-TCTT-GCA-T-ATGAT-CAAAA--------TTCA-G------AC--T-AA----G--ACA--TTAT--T--TAA--AGTAGTTATAATG--CT-C-AT-A--TTTCCA-N-AG-TT-A-CTGCA--C-AAATACTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TA--TAT---C-G-C-ATGTTATCAA---ATC--A---T-CTGAAATGC-AT----G-AAAA---CC-ATNTGTT-GGTG--ATCT-----AAAT-G-GG-AAATAAAT-----TATA--AGA-ATTAAAAA-AAAAAAAAAAAAAAAAATT-C-GCC-----ANA-T--CCGAGAATTG--AAC-C--GGGTACCCT-CTTCAT-GC---GAGTCT--G-A-C-G-CGCTA---------C-----------CGA---------C-ACGC-CACC-TACTT-C----GC---------C---------TGA-------T---GT----------AAATTAT-AAAC-AAAA-GTCAAAGTGT
gi|1 : AGGC-A-T-TAA-GACCCC-CTCTTAAAATTTC-ACTCATTCCGTATTTCC--ACTAGTA-T-G-CCACATG-GT-ATAAA-----A-------GTAAAAC--A-ATA--------AA-TTTAC-T-TG-ACT-AGTTTTTG-AATATTGCGTT--G---CCATGCAACTCCATCAA-ACAT-AT-GAA-CAATTA-ATCTTATT-CATTTACAT-AAA-TATGTTCAAATGCAA--GCTAGACTT-AAAA-GTCA--A---AATTTTTT--AACT-TG-A-A-TGATAATA---------TATTT---ATTAAATTCCATAAT-GCA--TTC-TCTT-GCA-T-ATGAT-CAAAA--------TTCAGG------AC--T-AAG---G--ACA--TTATTAT--TAATCAGTAGTTATAATGCCCT-C-AT-AAGTTTCCA-A-AT-TT-A-CTGCA--CAAAATACTCTC---T---TAGCAACAACCAGAT-AT--TGTCACTATAATCATAATACG-T---TAT-----G-C-ATGTTATCAA---ATCG-A---TCCTGAAATGCAAT----GCAAAA---CC-AT-TGTT-GGTG--ATCT-----AAATGG-GG-AAATAAATTGGTCTATT--AGA-A-TAACAG-AAAAAAAAAAAAAAAAATT-C-GCCA----AAA-T--TC-AGACATG--AAA-C--CGGTGCCTT-CTTCATGGC---GAGTCT--G-A-C---CGCTA---------CCTTATTACGCACAA---------C-ACAG-CACC-TACTTAC----GC---------C---------TGA-------T---GT----------AAACTGTAAAAC-AAAA-GTC
gi|10 : ga-AATGGCA--TCA-TCTT-GCA-TTATGAT-CAAA---------TTCA-A------AC--TTAA----G--ACA--TTA---------------------ATG--CT-C-AT-A--TTTCCA-T-AG-TT-A-CTGCA--C-AAATACTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TA--TAT---T-A-C-ATGTTATCAA---ATCA-A---T-CTGAAATGC-AT----GAAAAA---CC-ATATGTT-GGTG--ATCT-----AAAA-GAGG-AAATAAAT-----TATA--AGA-ATT--------AAAAAAAAAAAAAAATT-CTGCC-----GAA-A--ACGAGAATTG--AAC-T--GGGTATAC--CTGCAT-GT---GAGCCT--G---C-GACGCTA---------C-----------CCAT--------T-ACGC-CACC--ACAT-C----AC---------T---------T
gi|11 : CC-CTCTTCAAATTT--ACACAATGC-TATA-CC--AGTAGTAAT-G-C-ACAGATGT-ATAAA-----T-------G-AAAAA--A-ATA----TGT-AA-TTTAC-T-TT-CAT-GTATTTT--TATGTTG-GTT--G---CCTAGCAACGC-ATCAA-CCAT-GT-TCA-CAATTA-A-GTTATT-CATTTTCAT-AAT-TAT-TTGAAATGCAA--
gi|12 : gaggtctttatgtaccctccaACTC-----T---TAAGAACCACCA-AT-AT--TGTGACTATATCTTTAAT--G-GA--TAT---TGG-CAATGTTATCAA---ATC--A---T-CTGAAATG--AT----G--AAA---CC-ATTTTTT-GGTG--AT-T-----AAATGG-GG-AAATAAA------TATA--AGAGATTAAAGA-AAAAAAAAAAAAGATAA---C-GGTAG---ATA-T--TCAAAGATTG--ATCGC--CGGTACCGT-CT--AT-GCACGAAATCT--GAA-C-G-TGCTA---------C-----------CGATAG------C-GCAC-CACA-T-CTT-CACCAAC---------C---------TG--------T---GT----------AAATtattatcgaataaatgttttatatttacagatgactaagttaaaccatataccgtaatctaaaacagaag
gi|13 : aaaccaaA-ACATCAT-GAA-CAATTA-A-AT-ATT-C-TTTACAT-AAAATAT-TTCAAATGCAGCTG----AC-T-AAAA-GTA---A---ATTTTTTTAGAACT-T--A-A-TGATCA-A---------T-TTT---A-TAAATT-CA-AATGGC----TA-TCTT-GCC-A-ATGAG-CACAATG------TTCA-GA-----AC--T-AA----G--AC-----------------AGTA--TATG--G--CT-CAATAA--TTTCCC-A-AG-TT-T-CTGC---C-AAATACTC-C---T---
gi|14 : AGGC-G-T-TTATGACCCC-CTCTTTAAATGT--ACTTATTCC-TATT-CC--ATTAGTCGT-G-C-AAAAGTGT-ATAAA-----ATATAAATGCAAAA---A-ATA----CGT-AA-TTTAC-T-TTTGAT-ATCTTTT--AGTATTG-GCT--A---CCTAGCAACGC-ATAAA-ACAT-AT-GAA-CAATCA-A-ATGATT-CATTTTCAT-AAA-TA
gi|15 : -AAATAAAT-----TATA--AGA-ATTTAAAA-AAAAAATAATAA--------T-GCT-----ACA-T--ACGAGAATTG--AAC-C--GGGTACACT-CTTCAT-GC---AAGTCT--G-A-C-G-CGCTA---------C-----------CTATTACGCCACC-ACGC-CACC-TAATT-CTT--GC--------------------GA-------T---GT----------AAATTAT-AAAC-AAAA-GTC-AAGTGT
gi|16 : -GG-AAATAAAT-----TATA--AGA-ATTAAAAA-AAAA-------------TTAC-ACT-----ACT-T--CCGAGATGTG--AAC-C--AGGTACCCT-CTTCAT-GC---AAGTCT--G-A-C-G-CGCTA---------C-----------CGA---------TTACGC-CACCATGC---C----GCATACGAACGC---------CGT-------T---GT----------AAATTAT-AAAC-AAAA-GTCTAAGTGT
gi|17 : AGGCCA-TCTAATG---CC-CTCTTAAAATTTTCACTC-TTCC-TATT-TCCGAGT-GTAGA-G-TTACATGTGT-ATAAA-----A-------G-AAAA---A-AAAAAAATGT-AA-TTTAC-TCTT-GCA-CTCTTTT--AATATTG-GTT--G---CCTAGCAACGC-AT-AA-ACA
gi|2 : AGGC-A-T-TAATGGCCCC--TCT-AAAATTT--A-TCATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGTGT-ATAAA-----A-------G-AAAA---A-ATA----TGT-AAATTTAC-T-TT-GTTTATCTTTTTTAATATTG-GTT--G---CCTAGCAACAC-ATCAA-ACAT-ATTGAA-CAAT-A-A-ATTATTTCATTTA-AT-AAA-T-T-TTCAAATGCAA--G----ACTT-AAAAAGTCT--A---ATTTTTT---AACT-TG-A-AATGATAATA---------T-TT----A-TAAATTCCA-AATTGCA--TTTATCTTTGCAAT-ATGATTCAAAA--------TTCA-G------AC--T-AA----GGGACA-----------------------GTAATG--CT-C-AT-A--TTTCCA-A-AG----A-CTGCA--C-AAATACTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TACTTAT---T-GGC-ATGTTATCAA---ATTCAA---T-CTGAAATG--AT----G-AAAA---CCCATTTGTTTGGTG--ATTC-----GAAT-G-GGGAAATAAAT-----TATA--AGA-ATTAAAAA-AAAAAAAAA--------TTAC-GCCGCGGGATA-TTTCCGAGAATTGGAAAC-T--GGGTACCCT-CTTCAT-GC---GCGTCTTTG-A-C-G-CGCTA---------C-----------CGA---------TTACGC-CACCACACCA-C----AT---------A---------TGACCCTCGTT---GT----------AAATTATTAAAC-AAAA-GTCAAAGT
gi|20 : gTAATG--CTTC-AT-A--TTTCCA-ATAG-TTTA-CTTCA--C-AAATACTA-C---TCCATTGCAACAACCA-ATGGT--TGTGAtg
gi|21 : t---------C-ACGC-CACC-TACTT-C----TC---------C----------AA-------TACAGT----------AAA-TAT-AAACAAAAA-GTCAAAGTGT
gi|22 : gccacAC-C--GGGTACCTT-CTTCAT-GC---GAGTCT--G-A-C-G-AGCTA---------C-----------CAAT--------T-ACGC-
gi|23 : CATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGT
gi|3 : AGGC-A-T-TTATGGCCCC-CTCTTCAAACTT--ACTCATTCC-TATT-CC--TGTAGTAGT-G-C-ACATGTGT-ATAAA-----A-------G-AAAACAAA-ATA----TGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTT--G---CTTAGCAACGC-ATCAA-ACAT-AT-GAA-CAATCA-A-ATTATT-CATTTACAT-AGA-TAT-TTCAAATGCAA--G----ACTT-AAAA-GTCTAAA---AACATTTT--AACT-AG-A-A-TGATAATA---------T-TTTAAAA-CAAATGTCA-ATTGGCA--TTA-TCCT-GCA-T-ATGAT-CAAAA--------TTCA-A------ACT-T-TA----G--ACA--TTAT--C--TAA--AGTTGT--TAATG--CT-C-AC-A--TTTCCA-T-AG-TT-A-CTTCA--C-AAATACTC-C---T---TAGCAACAACCA-AT-AT--TGTGAATATATCTATAATACG-TA--TAA---C-A-C-ATGTTATCAATGGA----A---T-CTGAAATAC-ATGGGGG-AAAAACCCC-AGATACT-GGTG--ATCTTA---AAGT-G-GG-GAA-AAAT-----TGT
gi|3 : gGATTTG--AAC-CGTGGGT---CTACTGCTT-GT---GAACCT--G-AGC-A-CGCTA---------C-----------CTAT--------T-GCTC-CATC--ACTT-C----AA---------T---------T-A-------C---GTCAATTTCCGGAAATTATAAAAC-AAAATGTCAAAgggttttttttaaatcgccctcaacaggatttgaaccgtgggtctactgcttgtgaacctgagcacgctacctattgctccatcacttcaattacgtcaatttccggaaattataaaacaaaatgtcaaat
gi|4 : gaggcatttatggccccctcttcaaacttactcattcctattcctgtagtagtgcacatgtgtataaaagaaaacaaaatatgtaatttactttgctatcttttaatattggttgcttagcaacgcatcaaacatatgaacaatcaaattattcatttacatagatatttcaaatgcaagacttaaaagtctaaaaacattttaactagaatgataatattttaaaacaaatgtcaattggcattatcctgcatatgatcaaaattcaaactttagacattatctaaagttgttaatgctcacatttccatagttacttcacaaatactccttagcaacaaccaatattgtgaatatatctataatacgtataacacatgttatcaatggaatctgaaatacatgggggaaaaaccccagatactggtgatcttaaagtggggaaaaattgtgggttttttttaaatcgccctcaacagAGGC-A-T-TAATGACCCC--TCTTAAAATTT--ACTCATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGTGT-ATAAA-----A-------G-AAAA---A-ATA----TGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTT------CCTAGCAACGC-ATCAA-ACAT-AT-GAA-CAAT---A-ATTATT-CATTTGCAT-AAA-TAT-TTCAAATGCAA--G----ACTT-AAAA-GTCT--A---ATTTTTTT--AACT-TG-A-A-TGATAATA---------T-TTT---A-TAAGTTCCA-AATGCCA--TTC-TCTT-GCA-T-ATGAT-CAAAA--------TTCA-G------AC--T-AA----G--ACA--TTAT--T--TAA--AGTAGTTATAATG--CT-C-AT-A--TTTCCA-A-AG-TT-A-CTGCA--C-AAATTCTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TT--TAT---T-G-C-ATGTTATCAA---ATC--A---T-CTGAAATGC-AT----G-AAAA---CC-ATTTGTT-GGTG--ATCT-----AAAT-G-GG-AAATAAAT-----TGTATTAGA-ATAAAAAA-AAAAAAAAAAAAAAAAATT-T-GCC-----AAA-T--CCGTGAATTG--AAC-C---GGTACCTT-CTTCAT-GC---GAGTCT--G-A-C-G-CTCTA---------C-----------CAA---------C-ACGC-CACC-TACTT-C----GC---------C---------TGA-------T---GT----------AAACTGT-AAAC--AAA-GTCAAAGTGTt
gi|5 : -AAAA---A-ATA----TGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTT--G---CCTACCAACGC-ATCAA-ACAT-AT-TTA-CAATCA-A--TTATT-CATTTACAT-AAA-TAT-TTCAAATGCAA--G----ACTTAAAAA-GTCT--A---A-TTTTTT--AACT-TG-A-A-TGATAATA---------T-TTT---A-TAAATTCCA-AATGGCA--TTA-TCTT-GCA-T-ATGAT-CAAAA--------TTCA-A------ACAAT-AA----G--ACA--TTAT--T--T-A--AGTAGTTA-AATG--CT-C-AT-A--TTTCCA-T-AG-TT-A-CTGCA--C-AAATACTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TA--TAT---C-A-C-ATGTTATCAA---ATCA-A---T-CTGAAATGC-AT----GAAAAA---CC-ATATGCT-GGTG--ATCTAAAAGAAAG-G-GG-AAGTAAAT-----TATA--AGA-ATT----------TAAAAAAAAAAAATT-C-CGC-----AGATT--TCAGGACTTG--AAC-C--GGGGACTCT-CAGCAT-GT---GAGCCT--G-C-C-GACACTA---------C-----------TTA---------CTACGC-CACC-T-TTT-C----AT---------CTATAAATTATGA-------T---GT----------AAATTAC-ATAC-AAAA-GTCAAA
gi|6 : AGGC-A-T-TTATGACCCAACTCTTTCAAATT--ACTC-CTCC-TATT-CT--ACTAGTGGT-GGC-ACATG------AAC-----A-------A-AATG---T-ACA----TGT-CA-TTTAC-T-TT-GCT-ATCTTT---GATAT-G-GTTTTG---CCCAGCAACGCGATGAA-ACAT-AT-GAAACAATTACA-ATTGTT-TATTTACAT-AAT-TTT-TTCAA-TG-AA--G----ACTT-AAAA-GTAT--ATATATTCTTTTTAAACT-AG-A-A-TGATACTA---------T-TTT---A-TAAATT-CA-AATGGCAATTTA-TCCT-GCA-T-ATGAT-CAAAATGTTTTTTTTTG-GGAAAAAAA--T-AATCTTG--ACA--TTAT--TC-TAA--ATTGGT--TAATG--TT-C-AT-A--TTTCCA-T-AG-TC-A-TTGCA--TAAAATATTT-C---T---TAGCAACAACCA-AT-A---TGTGAA-ATATCTATAGTGCG-TA--TATAAAA-A-C-ATGTTATCAA---AAT--AAATT-CTGAAATAC-------G-AAAA---a
gi|7 : A-GTCA--A---ATTTTTT---AACTCTG-A-A-TGAT--CA---------T-TTT---A-TAAATTC-A-AATGCCA--TTC-TCTT-GCA-T-ATGAT-CAAAA--------TTCA-G------AC--T-AA----GTTACA--TTAT--TTATAA--AGTAGTTATAATG--CT-C-AT-A---TTCCA-A-AGTTT-ACCTGCA--CAAAATACTC-C---T---TAGCAATAACCA-AT-ATTCTGTGACTATATCTATAATACGTTT--TAT---T-G-C-ATGTTATCAA---ATCG-A---T-CTGAAATGC-AT----G-AAAA---CC-ATTTTTT-GGTGTAATCTA----AAATGG-GG-AAATAAAT-----T------GC-ATTAGAAATAAAAAAAAAAAAAAAAATT-C-GCC-----AC----------AAT-----------------------TCAT-GC---GAGTCT--G-A-CTG-CGCTACCTATTACGC-----------CAA---------C-ACACGCACC-TACTT-C----GC---------C---------TGA-------T---GTA---------AAACTGT-AAAC-AAAT-GTCAAAGTGa
gi|8 : TTCG-TATT-CC--AGTATTAGTTG-C-ACGTGC-T-ATAAATAAAGA-------A-AAAA---A-ATA----TGTTAA-TTTACTT-TT-GAT-ATC-TTT--AATATT--GTT--G---CCTAGCAACGC-ATCAT-ACATAAT-GAA-CAATCA-A-ATTTTG-CATTTTCAT-AAA-TAT-TTCAAATGAAA--G----ACTG-AATG-GCCT--A---ATTTTTTA--AACT-AG-A-A-TGA-AAAA---------C-TTT---A-T
gi|8 : tAA--G----ACTG-AAAA-GTCT--A---ATTTTTTT--AAAT-AGAA-A-TGATAATACTTATCAACT-TTA---A-TTAATT-CA-ATTTGCA--TAT-TC-T-GCA-T-TTGAT-C-AAA--------TGCA--------AC--T-TA----T--ACATTTTAT--T--TA------------AATG--CT---AT-A--TTTTAA-T-AGTTT-A-CTTCACCC-AAATA-TC-CATTT---TGCCAACAACCA-AT-GT--cattactctaagactgaaaagtctaatttttttaaatagaaatgataatacttatcaactttaattaattcaatttgcatattctgcatttgatcaaatgcaacttatacattttatttaaatgctatattttaatagtttacttcacccaaatatccattttgccaacaaccaatgtg
gi|9 : tttcgtattccagtattagttgcacgtgctataaataaagaaaaaaaatatgttaatttacttttgatatctttaatattgttgcctagcaacgcatcatacataatgaacaatcaaattttgcattttcataaatatttcaaatgaaagactgaatggcctaattttttaaactagaatgaaaaactttatcattactctAGGC-AAT-TAATGGCCC---TCTTAACATTT--ACTCATTC---ATT-CC--AGTAG-AG--G-C-ACATGTGTTATAAA-----C-------G-AAAA---ACAT-----TGT-A--TTGAC-T-TT-GCT-ATCTTT---AAGATTG-GTT--GGCGCCTAGCA---C-ATCGACAAAA-AT-GAA-CAGATA-A-ATTATT-CATT-ACATTAAA-TAT-TCCAAATGCAA--G----ACTT-AAAA-GTCT--A---ATTTTTTA--AACT-TG-ATA-TG-TAATA-----------TTT---A-TAAATTCCA-AATGGCA--TTC-T-TT-GCA-T-ATGAT-C-AAA--------TTCA-G------AC--T-AA----G--ACA--TT-C--T--TAA----TAGAT-TAATG--CT-C-AT-A--TTTCCAGA-AG-TT-A-CTGCA--C-AAATg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AAAAAAGGAAATATAAAATGATAAAAAAAAAACAGTTTCTGCAAGCAGGATTTGAACCCGGGTCGTCTACCTCGCGCAACGGCGACGTTACCTATTACGCTA
Unaligned ( gi|19 ): AGAATTTGAACCAACAACCTACTGCTTGAAAGATCAATGACGCTATTACCATTACGCATCATTTCGCTTGCAATGCATTAATATTTTATAAACAATC
Alignments
lowQualScore : 11 111111111111111 111 111 11111111111 11111111 11111111 1111111 3333333333333333333 1 2222222 22 1 1111111 11111 2222222222222 1 11 111111111 222222222 444444444444444444444444444444444444444444444444444 1
lowQualScore : 5 5 5 0 4 88 1 00 0 3 3 55 3 3 7 1 4 999999999999999 333 3 7777 3 3 3 3 3 3 88 3 777777 7 3 7 3 3 6 3 3 3 3 3 4 55 8888 4 3 555 666 0 444 44 3 3 3 55555555555 666 3 6 3 55 44 3 3 3 3 88888888 66666666 88 3 3333333 55 7777777777777777777 44 3 3 3 44 888 6 3 3 44 0 3 555 555 3 3 55 4 888 1111111 4 777 33 777 4 55 9999 3 777 5 5 5 66 5555555 00000 55 4 3 4 1 0 2 11 55 999 9999999999999 2 2 55 3 3 666 0 1 6 1 3 555 44 555 3 0 00 666666666 444444444 999 3 555555555555555555555555555555555555555555555555555 0 3 4 4 0
lowQualScore : . . . . . .. . .. . . . .. . . . . . ............... ... . .... . . . . . . .. . ...... . . . . . . . . . . . . .. .... . . ... ... . ... .. . . . ........... ... . . . .. .. . . . . ........ ........ .. . ....... .. ................... .. . . . .. ... . . . .. . . ... ... . . .. . ... ....... . ... .. ... . .. .... . ... . . . .. ....... ..... .. . . . . . . .. .. ... ............. . . .. . . ... . . . . . ... .. ... . . .. ......... ......... ... . ................................................... . . . . .
lowQualScore : 0 0 0 8 2 33 0 66 8 6 6 00 6 6 3 3 0 555555555555555 666 6 7777 6 6 6 6 6 6 66 6 444444 3 3 3 6 6 4 6 6 6 6 6 0 00 5555 0 6 222 444 2 666 11 6 6 6 00000000000 444 6 6 6 00 66 6 6 6 6 22222222 66666666 66 6 6666666 00 9999999999999999999 66 3 3 3 66 555 7 3 3 66 0 3 888 888 6 6 00 4 333 0000000 4 888 99 888 4 66 4444 3 888 0 9 0 99 4444444 00000 55 0 4 0 1 9 2 44 55 222 1111111111111 3 5 00 3 3 333 3 0 7 1 3 888 66 000 3 0 66 555555555 666666666 888 6 444444444444444444444444444444444444444444444444444 4 3 4 4 4
consensus : AGGC-A-T-TAATGGCCCC-CTCTTNAAATTT--ACTCATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGTGT-ATAAA-----A-------G-AAAA---A-ATA----TGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTT--G---CCTAGCAACGC-ATCAA-ACAT-AT-GAA-CAATCA-A-ATTATT-CATTTACAT-AAA-TAT-TTCAAATGCAA--G----ACTT-AAAA-GTCT--A---ATTTTTTT--AACT-TG-A-A-TGATAATA---------T-TTT---A-TAAATTCCA-AATGGCA--TTN-TCTT-GCA-T-ATGAT-CAAAA--------TTCA-G------AC--T-AA----G--ACA--TTAT--T--TAA--AGTAGTTATAATG--CT-C-AT-A--TTTCCA-A-AG-TT-A-CTGCA--C-AAATACTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TA--TAT---C-G-C-ATGTTATCAA---ATC--A---T-CTGAAATGC-AT----G-AAAA---CC-ATNTGTT-GGTG--ATCT--A----AATGGGGAAATAAAT-----TATA--AGA-ATTAAAAA-AAAAAAAAAAAAAAAAA--TT-C-GCC-----ANA-T--CCGAGANTTG--AA-C-CG--GGTACCCT-CTTCAT-GC---GAGTCT--G-A-C-G-CGCTACC-NAT--------TACGC---------CACC-TACTT-C----GC---------C---------TGA-------T---GT----------AAATTAT-AAAC-AAAA-GTCAAAGTGT
Reference ( family-616 ) : AGGC-A-T-TAATGGCCCC-CTCTTNAAATTT--ACTCATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGTGT-ATAAA-----A-------G-AAAA---A-ATA----TGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTT--G---CCTAGCAACGC-ATCAA-ACAT-AT-GAA-CAATCA-A-ATTATT-CATTTACAT-AAA-TAT-TTCAAATGCAA--G----ACTT-AAAA-GTCT--A---ATTTTTTT--AACT-TG-A-A-TGATAATA---------T-TTT---A-TAAATTCCA-AATGGCA--TTN-TCTT-GCA-T-ATGAT-CAAAA--------TTCA-G------AC--T-AA----G--ACA--TTAT--T--TAA--AGTAGTTATAATG--CT-C-AT-A--TTTCCA-A-AG-TT-A-CTGCA--C-AAATACTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TA--TAT---C-G-C-ATGTTATCAA---ATC--A---T-CTGAAATGC-AT----G-AAAA---CC-ATNTGTT-GGTG--ATCT--A----AATGGGGAAATAAAT-----TATA--AGA-ATTAAAAA-AAAAAAAAAAAAAAAAA--TT-C-GCC-----ANA-T--CCGAGAATTG--AA-C-CG--GGTACCCT-CTTCAT-GC---GAGTCT--G-A-C-G-CGCTACC-GAT--------CACGC---------CACC-TACTT-C----GC---------C---------TGA-------T---GT----------AAATTAT-AAAC-AAAA-GTCAAAGTGT
gi|1 : AGGC-A-T-TAA-GACCCC-CTCTTAAAATTTC-ACTCATTCCGTATTTCC--ACTAGTA-T-G-CCACATG-GT-ATAAA-----A-------GTAAAAC--A-ATA--------AA-TTTAC-T-TG-ACT-AGTTTTTG-AATATTGCGTT--G---CCATGCAACTCCATCAA-ACAT-AT-GAA-CAATTA-ATCTTATT-CATTTACAT-AAA-TATGTTCAAATGCAA--GCTAGACTT-AAAA-GTCA--A---AATTTTTT--AACT-TG-A-A-TGATAATA---------TATTT---ATTAAATTCCATAAT-GCA--TTC-TCTT-GCA-T-ATGAT-CAAAA--------TTCAGG------AC--T-AAG---G--ACA--TTATTAT--TAATCAGTAGTTATAATGCCCT-C-AT-AAGTTTCCA-A-AT-TT-A-CTGCA--CAAAATACTCTC---T---TAGCAACAACCAGAT-AT--TGTCACTATAATCATAATACG-T---TAT-----G-C-ATGTTATCAA---ATCG-A---TCCTGAAATGCAAT----GCAAAA---CC-AT-TGTT-GGTG--ATCT--A----AATGGGGAAATAAATTGGTCTATT--AGA-A-TAACAG-AAAAAAAAAAAAAAAAA--TT-C-GCCA----AAA-T--TC-AGACATG--AA-A-CC--GGTGCCTT-CTTCATGGC---GAGTCT--G-A-C---CGCTACCTTAT--------TACGCACAACACAGCACC-TACTTAC----GC---------C---------TGA-------T---GT----------AAACTGTAAAAC-AAAA-GTC
gi|10 : ga-AATGGCA--TCA-TCTT-GCA-TTATGAT-CAAA---------TTCA-A------AC--TTAA----G--ACA--TTA---------------------ATG--CT-C-AT-A--TTTCCA-T-AG-TT-A-CTGCA--C-AAATACTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TA--TAT---T-A-C-ATGTTATCAA---ATCA-A---T-CTGAAATGC-AT----GAAAAA---CC-ATATGTT-GGTG--ATCT--A----AAAGAGGAAATAAAT-----TATA--AGA-ATT--------AAAAAAAAAAAAAAA--TT-CTGCC-----GAA-A--ACGAGAATTG--AA-C-TG--GGTATAC--CTGCAT-GT---GAGCCT--G---C-GACGCTACC-CAT--------TACGC---------CACC--ACAT-C----AC---------T---------T
gi|11 : CC-CTCTTCAAATTT--ACACAATGC-TATA-CC--AGTAGTAAT-G-C-ACAGATGT-ATAAA-----T-------G-AAAAA--A-ATA----TGT-AA-TTTAC-T-TT-CAT-GTATTTT--TATGTTG-GTT--G---CCTAGCAACGC-ATCAA-CCAT-GT-TCA-CAATTA-A-GTTATT-CATTTTCAT-AAT-TAT-TTGAAATGCAA--
gi|12 : gaggtctttatgtaccctccaACTC-----T---TAAGAACCACCA-AT-AT--TGTGACTATATCTTTAAT--G-GA--TAT---TGG-CAATGTTATCAA---ATC--A---T-CTGAAATG--AT----G--AAA---CC-ATTTTTT-GGTG--AT-T--A----AATGGGGAAATAAA------TATA--AGAGATTAAAGA-AAAAAAAAAAAAGATAA-----C-GGTAG---ATA-T--TCAAAGATTG--AT-CGCC--GGTACCGT-CT--AT-GCACGAAATCT--GAA-C-G-TGCTACC-GATAG------CGCAC---------CACA-T-CTT-CACCAAC---------C---------TG--------T---GT----------AAATtattatcgaataaatgttttatatttacagatgactaagttaaaccatataccgtaatctaaaacagaag
gi|13 : aaaccaaA-ACATCAT-GAA-CAATTA-A-AT-ATT-C-TTTACAT-AAAATAT-TTCAAATGCAGCTG----AC-T-AAAA-GTA---A---ATTTTTTTAGAACT-T--A-A-TGATCA-A---------T-TTT---A-TAAATT-CA-AATGGC----TA-TCTT-GCC-A-ATGAG-CACAATG------TTCA-GA-----AC--T-AA----G--AC-----------------AGTA--TATG--G--CT-CAATAA--TTTCCC-A-AG-TT-T-CTGC---C-AAATACTC-C---T---
gi|14 : AGGC-G-T-TTATGACCCC-CTCTTTAAATGT--ACTTATTCC-TATT-CC--ATTAGTCGT-G-C-AAAAGTGT-ATAAA-----ATATAAATGCAAAA---A-ATA----CGT-AA-TTTAC-T-TTTGAT-ATCTTTT--AGTATTG-GCT--A---CCTAGCAACGC-ATAAA-ACAT-AT-GAA-CAATCA-A-ATGATT-CATTTTCAT-AAA-TA
gi|15 : AAATAAAT-----TATA--AGA-ATTTAAAA-AAAAAATAATAA----------T-GCT-----ACA-T--ACGAGAATTG--AA-C-CG--GGTACACT-CTTCAT-GC---AAGTCT--G-A-C-G-CGCTACC-TATTACGCCACCACGC---------CACC-TAATT-CTT--GC--------------------GA-------T---GT----------AAATTAT-AAAC-AAAA-GTC-AAGTGT
gi|16 : GGAAATAAAT-----TATA--AGA-ATTAAAAA-AAAA---------------TTAC-ACT-----ACT-T--CCGAGATGTG--AA-C-CA--GGTACCCT-CTTCAT-GC---AAGTCT--G-A-C-G-CGCTACC-GAT--------TACGC---------CACCATGC---C----GCATACGAACGC---------CGT-------T---GT----------AAATTAT-AAAC-AAAA-GTCTAAGTGT
gi|17 : AGGCCA-TCTAATG---CC-CTCTTAAAATTTTCACTC-TTCC-TATT-TCCGAGT-GTAGA-G-TTACATGTGT-ATAAA-----A-------G-AAAA---A-AAAAAAATGT-AA-TTTAC-TCTT-GCA-CTCTTTT--AATATTG-GTT--G---CCTAGCAACGC-AT-AA-ACA
gi|18 : A--GGA-AATATAAA-ATGATAAAAAAAAAACAGTTT-CTGCA-----AG------CAGGATTTG--AACC-CG--GGTCGTCTACCTCGC-GC---AA---C--G-G-C-GACGTTACC-TAT--------TACGC---------TA
gi|2 : aaaaaAGGC-A-T-TAATGGCCCC--TCT-AAAATTT--A-TCATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGTGT-ATAAA-----A-------G-AAAA---A-ATA----TGT-AAATTTAC-T-TT-GTTTATCTTTTTTAATATTG-GTT--G---CCTAGCAACAC-ATCAA-ACAT-ATTGAA-CAAT-A-A-ATTATTTCATTTA-AT-AAA-T-T-TTCAAATGCAA--G----ACTT-AAAAAGTCT--A---ATTTTTT---AACT-TG-A-AATGATAATA---------T-TT----A-TAAATTCCA-AATTGCA--TTTATCTTTGCAAT-ATGATTCAAAA--------TTCA-G------AC--T-AA----GGGACA-----------------------GTAATG--CT-C-AT-A--TTTCCA-A-AG----A-CTGCA--C-AAATACTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TACTTAT---T-GGC-ATGTTATCAA---ATTCAA---T-CTGAAATG--AT----G-AAAA---CCCATTTGTTTGGTG--ATTC--G----AATGGGGAAATAAAT-----TATA--AGA-ATTAAAAA-AAAAAAAAA----------TTAC-GCCGCGGGATA-TTTCCGAGAATTGGAAA-C-TG--GGTACCCT-CTTCAT-GC---GCGTCTTTG-A-C-G-CGCTACC-GAT--------TACGC---------CACCACACCA-C----AT---------A---------TGACCCTCGTT---GT----------AAATTATTAAAC-AAAA-GTCAAAGT
gi|20 : gTAATG--CTTC-AT-A--TTTCCA-ATAG-TTTA-CTTCA--C-AAATACTA-C---TCCATTGCAACAACCA-ATGGT--TGTGAtg
gi|21 : tAC--------CACGC---------CACC-TACTT-C----TC---------C----------AA-------TACAGT----------AAA-TAT-AAACAAAAA-GTCAAAGTGT
gi|22 : gccA-C-CG--GGTACCTT-CTTCAT-GC---GAGTCT--G-A-C-G-AGCTACC-AAT--------TACGC---------
gi|23 : CATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGT
gi|3 : AGGC-A-T-TTATGGCCCC-CTCTTCAAACTT--ACTCATTCC-TATT-CC--TGTAGTAGT-G-C-ACATGTGT-ATAAA-----A-------G-AAAACAAA-ATA----TGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTT--G---CTTAGCAACGC-ATCAA-ACAT-AT-GAA-CAATCA-A-ATTATT-CATTTACAT-AGA-TAT-TTCAAATGCAA--G----ACTT-AAAA-GTCTAAA---AACATTTT--AACT-AG-A-A-TGATAATA---------T-TTTAAAA-CAAATGTCA-ATTGGCA--TTA-TCCT-GCA-T-ATGAT-CAAAA--------TTCA-A------ACT-T-TA----G--ACA--TTAT--C--TAA--AGTTGT--TAATG--CT-C-AC-A--TTTCCA-T-AG-TT-A-CTTCA--C-AAATACTC-C---T---TAGCAACAACCA-AT-AT--TGTGAATATATCTATAATACG-TA--TAA---C-A-C-ATGTTATCAATGGA----A---T-CTGAAATAC-ATGGGGG-AAAAACCCC-AGATACT-GGTG--ATCTTAA----AGTGGGGAA--AAAT-----TGT
gi|3 : gGATTTG--AA-C-CGTGGGT---CTACTGCTT-GT---GAACCT--G-AGC-A-CGCTACC-TAT--------TGCTC---------CATC--ACTT-C----AA---------T---------T-A-------C---GTCAATTTCCGGAAATTATAAAAC-AAAATGTCAAAgggttttttttaaatcgccctcaacaggatttgaaccgtgggtctactgcttgtgaacctgagcacgctacctattgctccatcacttcaattacgtcaatttccggaaattataaaacaaaatgtcaaat
gi|4 : gaggcatttatggccccctcttcaaacttactcattcctattcctgtagtagtgcacatgtgtataaaagaaaacaaaatatgtaatttactttgctatcttttaatattggttgcttagcaacgcatcaaacatatgaacaatcaaattattcatttacatagatatttcaaatgcaagacttaaaagtctaaaaacattttaactagaatgataatattttaaaacaaatgtcaattggcattatcctgcatatgatcaaaattcaaactttagacattatctaaagttgttaatgctcacatttccatagttacttcacaaatactccttagcaacaaccaatattgtgaatatatctataatacgtataacacatgttatcaatggaatctgaaatacatgggggaaaaaccccagatactggtgatcttaaagtggggaaaaattgtgggttttttttaaatcgccctcaacagAGGC-A-T-TAATGACCCC--TCTTAAAATTT--ACTCATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGTGT-ATAAA-----A-------G-AAAA---A-ATA----TGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTT------CCTAGCAACGC-ATCAA-ACAT-AT-GAA-CAAT---A-ATTATT-CATTTGCAT-AAA-TAT-TTCAAATGCAA--G----ACTT-AAAA-GTCT--A---ATTTTTTT--AACT-TG-A-A-TGATAATA---------T-TTT---A-TAAGTTCCA-AATGCCA--TTC-TCTT-GCA-T-ATGAT-CAAAA--------TTCA-G------AC--T-AA----G--ACA--TTAT--T--TAA--AGTAGTTATAATG--CT-C-AT-A--TTTCCA-A-AG-TT-A-CTGCA--C-AAATTCTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TT--TAT---T-G-C-ATGTTATCAA---ATC--A---T-CTGAAATGC-AT----G-AAAA---CC-ATTTGTT-GGTG--ATCT--A----AAT-GGGAAATAAAT-----TGTATTAGA-ATAAAAAA-AAAAAAAAAAAAAAAAA--TT-T-GCC-----AAA-T--CCGTGAATTG--AA-C-C---GGTACCTT-CTTCAT-GC---GAGTCT--G-A-C-G-CTCTACC-AA---------CACGC---------CACC-TACTT-C----GC---------C---------TGA-------T---GT----------AAACTGT-AAAC--AAA-GTCAAAGTGTt
gi|5 : -AAAA---A-ATA----TGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTT--G---CCTACCAACGC-ATCAA-ACAT-AT-TTA-CAATCA-A--TTATT-CATTTACAT-AAA-TAT-TTCAAATGCAA--G----ACTTAAAAA-GTCT--A---A-TTTTTT--AACT-TG-A-A-TGATAATA---------T-TTT---A-TAAATTCCA-AATGGCA--TTA-TCTT-GCA-T-ATGAT-CAAAA--------TTCA-A------ACAAT-AA----G--ACA--TTAT--T--T-A--AGTAGTTA-AATG--CT-C-AT-A--TTTCCA-T-AG-TT-A-CTGCA--C-AAATACTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TA--TAT---C-A-C-ATGTTATCAA---ATCA-A---T-CTGAAATGC-AT----GAAAAA---CC-ATATGCT-GGTG--ATCT--AAAAGAAAGGGGAAGTAAAT-----TATA--AGA-ATT----------TAAAAAAAAAAAA--TT-C-CGC-----AGATT--TCAGGACTTG--AA-C-CG--GGGACTCT-CAGCAT-GT---GAGCCT--G-C-C-GACACTACT-TAC--------TACGC---------CACC-T-TTT-C----AT---------CTATAAATTATGA-------T---GT----------AAATTAC-ATAC-AAAA-GTCAAA
gi|6 : AGGC-A-T-TTATGACCCAACTCTTTCAAATT--ACTC-CTCC-TATT-CT--ACTAGTGGT-GGC-ACATG------AAC-----A-------A-AATG---T-ACA----TGT-CA-TTTAC-T-TT-GCT-ATCTTT---GATAT-G-GTTTTG---CCCAGCAACGCGATGAA-ACAT-AT-GAAACAATTACA-ATTGTT-TATTTACAT-AAT-TTT-TTCAA-TG-AA--G----ACTT-AAAA-GTAT--ATATATTCTTTTTAAACT-AG-A-A-TGATACTA---------T-TTT---A-TAAATT-CA-AATGGCAATTTA-TCCT-GCA-T-ATGAT-CAAAATGTTTTTTTTTG-GGAAAAAAA--T-AATCTTG--ACA--TTAT--TC-TAA--ATTGGT--TAATG--TT-C-AT-A--TTTCCA-T-AG-TC-A-TTGCA--TAAAATATTT-C---T---TAGCAACAACCA-AT-A---TGTGAA-ATATCTATAGTGCG-TA--TATAAAA-A-C-ATGTTATCAA---AAT--AAATT-CTGAAATAC-------G-AAAA---a
gi|7 : A-GTCA--A---ATTTTTT---AACTCTG-A-A-TGAT--CA---------T-TTT---A-TAAATTC-A-AATGCCA--TTC-TCTT-GCA-T-ATGAT-CAAAA--------TTCA-G------AC--T-AA----GTTACA--TTAT--TTATAA--AGTAGTTATAATG--CT-C-AT-A---TTCCA-A-AGTTT-ACCTGCA--CAAAATACTC-C---T---TAGCAATAACCA-AT-ATTCTGTGACTATATCTATAATACGTTT--TAT---T-G-C-ATGTTATCAA---ATCG-A---T-CTGAAATGC-AT----G-AAAA---CC-ATTTTTT-GGTGTAATCTA-A----AATGGGGAAATAAAT-----T------GC-ATTAGAAATAAAAAAAAAAAAAAAAA--TT-C-GCC-----AC----------AAT------------------------TCAT-GC---GAGTCT--G-A-CTG-CGCTACC-TAT--------TACGCCAACACACGCACC-TACTT-C----GC---------C---------TGA-------T---GTA---------AAACTGT-AAAC-AAAT-GTCAAAGTGa
gi|8 : TTCG-TATT-CC--AGTATTAGTTG-C-ACGTGC-T-ATAAATAAAGA-------A-AAAA---A-ATA----TGTTAA-TTTACTT-TT-GAT-ATC-TTT--AATATT--GTT--G---CCTAGCAACGC-ATCAT-ACATAAT-GAA-CAATCA-A-ATTTTG-CATTTTCAT-AAA-TAT-TTCAAATGAAA--G----ACTG-AATG-GCCT--A---ATTTTTTA--AACT-AG-A-A-TGA-AAAA---------C-TTT---A-T
gi|8 : tAA--G----ACTG-AAAA-GTCT--A---ATTTTTTT--AAAT-AGAA-A-TGATAATACTTATCAACT-TTA---A-TTAATT-CA-ATTTGCA--TAT-TC-T-GCA-T-TTGAT-C-AAA--------TGCA--------AC--T-TA----T--ACATTTTAT--T--TA------------AATG--CT---AT-A--TTTTAA-T-AGTTT-A-CTTCACCC-AAATA-TC-CATTT---TGCCAACAACCA-AT-GT--cattactctaagactgaaaagtctaatttttttaaatagaaatgataatacttatcaactttaattaattcaatttgcatattctgcatttgatcaaatgcaacttatacattttatttaaatgctatattttaatagtttacttcacccaaatatccattttgccaacaaccaatgtg
gi|9 : tttcgtattccagtattagttgcacgtgctataaataaagaaaaaaaatatgttaatttacttttgatatctttaatattgttgcctagcaacgcatcatacataatgaacaatcaaattttgcattttcataaatatttcaaatgaaagactgaatggcctaattttttaaactagaatgaaaaactttatcattactctAGGC-AAT-TAATGGCCC---TCTTAACATTT--ACTCATTC---ATT-CC--AGTAG-AG--G-C-ACATGTGTTATAAA-----C-------G-AAAA---ACAT-----TGT-A--TTGAC-T-TT-GCT-ATCTTT---AAGATTG-GTT--GGCGCCTAGCA---C-ATCGACAAAA-AT-GAA-CAGATA-A-ATTATT-CATT-ACATTAAA-TAT-TCCAAATGCAA--G----ACTT-AAAA-GTCT--A---ATTTTTTA--AACT-TG-ATA-TG-TAATA-----------TTT---A-TAAATTCCA-AATGGCA--TTC-T-TT-GCA-T-ATGAT-C-AAA--------TTCA-G------AC--T-AA----G--ACA--TT-C--T--TAA----TAGAT-TAATG--CT-C-AT-A--TTTCCAGA-AG-TT-A-CTGCA--C-AAATg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AGAATTTGAACCAACAACCTACTGCTTGAAAGATCAATGACGCTATTACCATTACGCATCATTTCGCTTGCAATGCATTAATATTTTATAAACAATC
Alignments
lowQualScore : 11 111111111111111 111 111 11111111111 11111111 11111111 1111111 3333333333333333333 1 2222222 22 1 1111111 11111 2222222222222 222222222 111 44444444444444444444444444444444444444444444444444444444444444 1
lowQualScore : 5 5 5 0 4 88 1 00 0 3 3 55 3 3 7 1 4 999999999999999 333 3 7777 3 3 3 3 3 3 88 3 777777 7 3 7 3 3 6 3 3 3 3 3 4 55 8888 4 3 555 666 0 444 44 3 3 3 55555555555 666 3 6 3 55 44 3 3 3 3 88888888 66666666 88 3 3333333 55 7777777777777777777 44 3 3 3 44 888 6 3 3 44 0 3 555 555 3 3 55 4 888 1111111 4 777 33 777 4 55 9999 3 777 5 5 5 66 5555555 00000 55 4 3 4 1 0 2 11 55 999 6666666666666 2 1 44 3 3 666 0 6 4 3 555 3 44 44 333 3 9 3 66 33 222222222 555 0 3 55555555555555555555555555555555555555555555555555555555555555 55 7777 2 4 4 0
lowQualScore : . . . . . .. . .. . . . .. . . . . . ............... ... . .... . . . . . . .. . ...... . . . . . . . . . . . . .. .... . . ... ... . ... .. . . . ........... ... . . . .. .. . . . . ........ ........ .. . ....... .. ................... .. . . . .. ... . . . .. . . ... ... . . .. . ... ....... . ... .. ... . .. .... . ... . . . .. ....... ..... .. . . . . . . .. .. ... ............. . . .. . . ... . . . . ... . .. .. ... . . . .. .. ......... ... . . .............................................................. .. .... . . . .
lowQualScore : 0 0 0 8 2 33 0 66 8 6 6 00 6 6 3 3 0 555555555555555 666 6 7777 6 6 6 6 6 6 66 6 444444 3 3 3 6 6 4 6 6 6 6 6 0 00 5555 0 6 222 444 2 666 11 6 6 6 00000000000 444 6 6 6 00 66 6 6 6 6 22222222 66666666 66 6 6666666 00 9999999999999999999 66 3 3 3 66 555 7 3 3 66 0 3 888 888 6 6 00 4 333 0000000 4 888 99 888 4 66 4444 3 888 0 9 0 99 4444444 00000 55 0 4 0 1 9 2 44 55 222 7777777777777 3 0 66 1 1 333 2 2 0 1 444 1 22 22 999 1 2 1 66 99 999999999 777 5 3 66666666666666666666666666666666666666666666666666666666666666 00 7777 0 0 4 4
consensus : AGGC-A-T-TAATGGCCCC-CTCTTNAAATTT--ACTCATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGTGT-ATAAA-----A-------G-AAAA---A-ATA----TGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTT--G---CCTAGCAACGC-ATCAA-ACAT-AT-GAA-CAATCA-A-ATTATT-CATTTACAT-AAA-TAT-TTCAAATGCAA--G----ACTT-AAAA-GTCT--A---ATTTTTTT--AACT-TG-A-A-TGATAATA---------T-TTT---A-TAAATTCCA-AATGGCA--TTN-TCTT-GCA-T-ATGAT-CAAAA--------TTCA-G------AC--T-AA----G--ACA--TTAT--T--TAA--AGTAGTTATAATG--CT-C-AT-A--TTTCCA-A-AG-TT-A-CTGCA--C-AAATACTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TA--TAT---C-G-C-ATGTTATCAA---ATC--A---T-CTGAAATGC-AT----G-AAAA---CC-ATNTGTT-GGTG--ATCT--A----AATGGGGAAATAAAT-----TATA--AGA-ATTAAAAA-AAAAAAAAAAAAAAAAA--TT-C-GCC-----ANA-T--CCGAGANTTG--AA-C-CG--GGTACCCT-CTTCAT-GC---GAG-TC--T--G-A-C-G-C-GCTACC-NATTACG--C---------CACC-TACTT-C----GC---------C---------T---------G--A-------T---GT----------A--AAT----TAT-AAAC-AAAA-GTCAAAGTGT
Reference ( family-616 ) : AGGC-A-T-TAATGGCCCC-CTCTTNAAATTT--ACTCATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGTGT-ATAAA-----A-------G-AAAA---A-ATA----TGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTT--G---CCTAGCAACGC-ATCAA-ACAT-AT-GAA-CAATCA-A-ATTATT-CATTTACAT-AAA-TAT-TTCAAATGCAA--G----ACTT-AAAA-GTCT--A---ATTTTTTT--AACT-TG-A-A-TGATAATA---------T-TTT---A-TAAATTCCA-AATGGCA--TTN-TCTT-GCA-T-ATGAT-CAAAA--------TTCA-G------AC--T-AA----G--ACA--TTAT--T--TAA--AGTAGTTATAATG--CT-C-AT-A--TTTCCA-A-AG-TT-A-CTGCA--C-AAATACTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TA--TAT---C-G-C-ATGTTATCAA---ATC--A---T-CTGAAATGC-AT----G-AAAA---CC-ATNTGTT-GGTG--ATCT--A----AATGGGGAAATAAAT-----TATA--AGA-ATTAAAAA-AAAAAAAAAAAAAAAAA--TT-C-GCC-----ANA-T--CCGAGANTTG--AA-C-CG--GGTACCCT-CTTCAT-GC---GAG-TC--T--G-A-C-G-C-GCTACC-NATTACG--C---------CACC-TACTT-C----GC---------C---------T---------G--A-------T---GT----------A--AAT----TAT-AAAC-AAAA-GTCAAAGTGT
gi|1 : AGGC-A-T-TAA-GACCCC-CTCTTAAAATTTC-ACTCATTCCGTATTTCC--ACTAGTA-T-G-CCACATG-GT-ATAAA-----A-------GTAAAAC--A-ATA--------AA-TTTAC-T-TG-ACT-AGTTTTTG-AATATTGCGTT--G---CCATGCAACTCCATCAA-ACAT-AT-GAA-CAATTA-ATCTTATT-CATTTACAT-AAA-TATGTTCAAATGCAA--GCTAGACTT-AAAA-GTCA--A---AATTTTTT--AACT-TG-A-A-TGATAATA---------TATTT---ATTAAATTCCATAAT-GCA--TTC-TCTT-GCA-T-ATGAT-CAAAA--------TTCAGG------AC--T-AAG---G--ACA--TTATTAT--TAATCAGTAGTTATAATGCCCT-C-AT-AAGTTTCCA-A-AT-TT-A-CTGCA--CAAAATACTCTC---T---TAGCAACAACCAGAT-AT--TGTCACTATAATCATAATACG-T---TAT-----G-C-ATGTTATCAA---ATCG-A---TCCTGAAATGCAAT----GCAAAA---CC-AT-TGTT-GGTG--ATCT--A----AATGGGGAAATAAATTGGTCTATT--AGA-A-TAACAG-AAAAAAAAAAAAAAAAA--TT-C-GCCA----AAA-T--TC-AGACATG--AA-A-CC--GGTGCCTT-CTTCATGGC---GAG-TC--T--G-A-C---C-GCTACCTTATTACG--CACAACACAGCACC-TACTTAC----GC---------C---------T---------G--A-------T---GT----------A--AAC----TGTAAAAC-AAAA-GTC
gi|10 : ga-AATGGCA--TCA-TCTT-GCA-TTATGAT-CAAA---------TTCA-A------AC--TTAA----G--ACA--TTA---------------------ATG--CT-C-AT-A--TTTCCA-T-AG-TT-A-CTGCA--C-AAATACTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TA--TAT---T-A-C-ATGTTATCAA---ATCA-A---T-CTGAAATGC-AT----GAAAAA---CC-ATATGTT-GGTG--ATCT--A----AAAGAGGAAATAAAT-----TATA--AGA-ATT--------AAAAAAAAAAAAAAA--TT-CTGCC-----GAA-A--ACGAGAATTG--AA-C-TG--GGTATAC--CTGCAT-GT---GAG-CC--T--G---C-GAC-GCTACC-CATTACG--C---------CACC--ACAT-C----AC---------T---------T---------
gi|11 : CC-CTCTTCAAATTT--ACACAATGC-TATA-CC--AGTAGTAAT-G-C-ACAGATGT-ATAAA-----T-------G-AAAAA--A-ATA----TGT-AA-TTTAC-T-TT-CAT-GTATTTT--TATGTTG-GTT--G---CCTAGCAACGC-ATCAA-CCAT-GT-TCA-CAATTA-A-GTTATT-CATTTTCAT-AAT-TAT-TTGAAATGCAA--
gi|12 : gaggtctttatgtaccctccaACTC-----T---TAAGAACCACCA-AT-AT--TGTGACTATATCTTTAAT--G-GA--TAT---TGG-CAATGTTATCAA---ATC--A---T-CTGAAATG--AT----G--AAA---CC-ATTTTTT-GGTG--AT-T--A----AATGGGGAAATAAA------TATA--AGAGATTAAAGA-AAAAAAAAAAAAGATAA-----C-GGTAG---ATA-T--TCAAAGATTG--AT-CGCC--GGTACCGT-CT--AT-GCACGAAA-TC--T--GAA-C-G-T-GCTACC-GATAGCGCAC---------CACA-T-CTT-CACCAAC---------C---------T---------G----------T---GT----------A--AAT----tattatcgaataaatgttttatatttacagatgactaagttaaaccatataccgtaatctaaaacagaag
gi|13 : aaaccaaA-ACATCAT-GAA-CAATTA-A-AT-ATT-C-TTTACAT-AAAATAT-TTCAAATGCAGCTG----AC-T-AAAA-GTA---A---ATTTTTTTAGAACT-T--A-A-TGATCA-A---------T-TTT---A-TAAATT-CA-AATGGC----TA-TCTT-GCC-A-ATGAG-CACAATG------TTCA-GA-----AC--T-AA----G--AC-----------------AGTA--TATG--G--CT-CAATAA--TTTCCC-A-AG-TT-T-CTGC---C-AAATACTC-C---T---
gi|14 : AGGC-G-T-TTATGACCCC-CTCTTTAAATGT--ACTTATTCC-TATT-CC--ATTAGTCGT-G-C-AAAAGTGT-ATAAA-----ATATAAATGCAAAA---A-ATA----CGT-AA-TTTAC-T-TTTGAT-ATCTTTT--AGTATTG-GCT--A---CCTAGCAACGC-ATAAA-ACAT-AT-GAA-CAATCA-A-ATGATT-CATTTTCAT-AAA-TA
gi|15 : AAATAAAT-----TATA--AGA-ATTTAAAA-AAAAAATAATAA----------T-GCT-----ACA-T--ACGAGAATTG--AA-C-CG--GGTACACT-CTTCAT-GC---AAG-TC--T--G-A-C-G-C-GCTACC-TATTACG--C---------CACC--ACGC-C----AC---------C---------TAATTCTTGCG--A-------T---GT----------A--AAT----TAT-AAAC-AAAA-GTC-AAGTGT
gi|16 : GGAAATAAAT-----TATA--AGA-ATTAAAAA-AAAA---------------TTAC-ACT-----ACT-T--CCGAGATGTG--AA-C-CA--GGTACCCT-CTTCAT-GC---AAG-TC--T--G-A-C-G-C-GCTACC-GATTACG--C---------CACCATGC---C----GCATACGAACGC---------C---------G--T-------T---GT----------A--AAT----TAT-AAAC-AAAA-GTCTAAGTGT
gi|17 : AGGCCA-TCTAATG---CC-CTCTTAAAATTTTCACTC-TTCC-TATT-TCCGAGT-GTAGA-G-TTACATGTGT-ATAAA-----A-------G-AAAA---A-AAAAAAATGT-AA-TTTAC-TCTT-GCA-CTCTTTT--AATATTG-GTT--G---CCTAGCAACGC-AT-AA-ACA
gi|18 : A--GGA-AATATAAA-ATGATAAAAAAAAAACAGTTT-CTGCA-----AG------CAGGATTTG--AACC-CG--GGTCGTCTACCTCGC-GC---AA------C--G-G-C-GAC-GTTACC-TATTACG--C---------TA
gi|19 : aaaaaATTTG--AA-C-CA--ACAACCTA-CTGCTT-GA---AAGATCAAT--G-A-C-G-CTATTACC--ATTACG--C----------ATC--ATTT-C----GC---------T---------T---------GCAA-------T---GC----------ATTAATATTTTAT-AAAC-AA
gi|2 : agaAGGC-A-T-TAATGGCCCC--TCT-AAAATTT--A-TCATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGTGT-ATAAA-----A-------G-AAAA---A-ATA----TGT-AAATTTAC-T-TT-GTTTATCTTTTTTAATATTG-GTT--G---CCTAGCAACAC-ATCAA-ACAT-ATTGAA-CAAT-A-A-ATTATTTCATTTA-AT-AAA-T-T-TTCAAATGCAA--G----ACTT-AAAAAGTCT--A---ATTTTTT---AACT-TG-A-AATGATAATA---------T-TT----A-TAAATTCCA-AATTGCA--TTTATCTTTGCAAT-ATGATTCAAAA--------TTCA-G------AC--T-AA----GGGACA-----------------------GTAATG--CT-C-AT-A--TTTCCA-A-AG----A-CTGCA--C-AAATACTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TACTTAT---T-GGC-ATGTTATCAA---ATTCAA---T-CTGAAATG--AT----G-AAAA---CCCATTTGTTTGGTG--ATTC--G----AATGGGGAAATAAAT-----TATA--AGA-ATTAAAAA-AAAAAAAAA----------TTAC-GCCGCGGGATA-TTTCCGAGAATTGGAAA-C-TG--GGTACCCT-CTTCAT-GC---GCG-TC--TTTG-A-C-G-C-GCTACC-GATTACG--C---------CACCACACCA-C----AT---------A---------T---------G--ACCCTCGTT---GT----------A--AAT----TATTAAAC-AAAA-GTCAAAGTtc
gi|20 : gTAATG--CTTC-AT-A--TTTCCA-ATAG-TTTA-CTTCA--C-AAATACTA-C---TCCATTGCAACAACCA-ATGGT--TGTGAtg
gi|21 : tC-CACCACG--C---------CACC-TACTT-C----TC---------C-------------------A--A-------TACAGT----------A--AA-----TAT-AAACAAAAA-GTCAAAGTGT
gi|22 : gA-C-CG--GGTACCTT-CTTCAT-GC---GAG-TC--T--G-A-C-G-A-GCTACC-AATTACG--C---------
gi|23 : CATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGT
gi|3 : AGGC-A-T-TTATGGCCCC-CTCTTCAAACTT--ACTCATTCC-TATT-CC--TGTAGTAGT-G-C-ACATGTGT-ATAAA-----A-------G-AAAACAAA-ATA----TGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTT--G---CTTAGCAACGC-ATCAA-ACAT-AT-GAA-CAATCA-A-ATTATT-CATTTACAT-AGA-TAT-TTCAAATGCAA--G----ACTT-AAAA-GTCTAAA---AACATTTT--AACT-AG-A-A-TGATAATA---------T-TTTAAAA-CAAATGTCA-ATTGGCA--TTA-TCCT-GCA-T-ATGAT-CAAAA--------TTCA-A------ACT-T-TA----G--ACA--TTAT--C--TAA--AGTTGT--TAATG--CT-C-AC-A--TTTCCA-T-AG-TT-A-CTTCA--C-AAATACTC-C---T---TAGCAACAACCA-AT-AT--TGTGAATATATCTATAATACG-TA--TAA---C-A-C-ATGTTATCAATGGA----A---T-CTGAAATAC-ATGGGGG-AAAAACCCC-AGATACT-GGTG--ATCTTAA----AGTGGGGAA--AAAT-----TGT
gi|3 : gGATTTG--AA-C-CGTGGGT---CTACTGCTT-GT---GAA-CC--T--G-AGC-A-C-GCTACC-TATTGCT--C---------CATC--ACTT-C----AA---------T---------T------------A-------C---GTCAATTTCCGGA--AAT----TATAAAAC-AAAATGTCAAAgggttttttttaaatcgccctcaacaggatttgaaccgtgggtctactgcttgtgaacctgagcacgctacctattgctccatcacttcaattacgtcaatttccggaaattataaaacaaaatgtcaaat
gi|4 : gaggcatttatggccccctcttcaaacttactcattcctattcctgtagtagtgcacatgtgtataaaagaaaacaaaatatgtaatttactttgctatcttttaatattggttgcttagcaacgcatcaaacatatgaacaatcaaattattcatttacatagatatttcaaatgcaagacttaaaagtctaaaaacattttaactagaatgataatattttaaaacaaatgtcaattggcattatcctgcatatgatcaaaattcaaactttagacattatctaaagttgttaatgctcacatttccatagttacttcacaaatactccttagcaacaaccaatattgtgaatatatctataatacgtataacacatgttatcaatggaatctgaaatacatgggggaaaaaccccagatactggtgatcttaaagtggggaaaaattgtgggttttttttaaatcgccctcaacagAGGC-A-T-TAATGACCCC--TCTTAAAATTT--ACTCATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGTGT-ATAAA-----A-------G-AAAA---A-ATA----TGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTT------CCTAGCAACGC-ATCAA-ACAT-AT-GAA-CAAT---A-ATTATT-CATTTGCAT-AAA-TAT-TTCAAATGCAA--G----ACTT-AAAA-GTCT--A---ATTTTTTT--AACT-TG-A-A-TGATAATA---------T-TTT---A-TAAGTTCCA-AATGCCA--TTC-TCTT-GCA-T-ATGAT-CAAAA--------TTCA-G------AC--T-AA----G--ACA--TTAT--T--TAA--AGTAGTTATAATG--CT-C-AT-A--TTTCCA-A-AG-TT-A-CTGCA--C-AAATTCTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TT--TAT---T-G-C-ATGTTATCAA---ATC--A---T-CTGAAATGC-AT----G-AAAA---CC-ATTTGTT-GGTG--ATCT--A----AAT-GGGAAATAAAT-----TGTATTAGA-ATAAAAAA-AAAAAAAAAAAAAAAAA--TT-T-GCC-----AAA-T--CCGTGAATTG--AA-C-C---GGTACCTT-CTTCAT-GC---GAG-TC--T--G-A-C-G-C-TCTACC-AA-CACG--C---------CACC-TACTT-C----GC---------C---------T---------G--A-------T---GT----------A--AAC----TGT-AAAC--AAA-GTCAAAGTGTt
gi|5 : -AAAA---A-ATA----TGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTT--G---CCTACCAACGC-ATCAA-ACAT-AT-TTA-CAATCA-A--TTATT-CATTTACAT-AAA-TAT-TTCAAATGCAA--G----ACTTAAAAA-GTCT--A---A-TTTTTT--AACT-TG-A-A-TGATAATA---------T-TTT---A-TAAATTCCA-AATGGCA--TTA-TCTT-GCA-T-ATGAT-CAAAA--------TTCA-A------ACAAT-AA----G--ACA--TTAT--T--T-A--AGTAGTTA-AATG--CT-C-AT-A--TTTCCA-T-AG-TT-A-CTGCA--C-AAATACTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TA--TAT---C-A-C-ATGTTATCAA---ATCA-A---T-CTGAAATGC-AT----GAAAAA---CC-ATATGCT-GGTG--ATCT--AAAAGAAAGGGGAAGTAAAT-----TATA--AGA-ATT----------TAAAAAAAAAAAA--TT-C-CGC-----AGATT--TCAGGACTTG--AA-C-CG--GGGACTCT-CAGCAT-GT---GAG-CC--T--G-C-C-GAC-ACTACT-TACTACG--C---------CACC-T-TTT-C----AT---------CTATAAATTAT---------G--A-------T---GT----------A--AAT----TAC-ATAC-AAAA-GTCAAA
gi|6 : AGGC-A-T-TTATGACCCAACTCTTTCAAATT--ACTC-CTCC-TATT-CT--ACTAGTGGT-GGC-ACATG------AAC-----A-------A-AATG---T-ACA----TGT-CA-TTTAC-T-TT-GCT-ATCTTT---GATAT-G-GTTTTG---CCCAGCAACGCGATGAA-ACAT-AT-GAAACAATTACA-ATTGTT-TATTTACAT-AAT-TTT-TTCAA-TG-AA--G----ACTT-AAAA-GTAT--ATATATTCTTTTTAAACT-AG-A-A-TGATACTA---------T-TTT---A-TAAATT-CA-AATGGCAATTTA-TCCT-GCA-T-ATGAT-CAAAATGTTTTTTTTTG-GGAAAAAAA--T-AATCTTG--ACA--TTAT--TC-TAA--ATTGGT--TAATG--TT-C-AT-A--TTTCCA-T-AG-TC-A-TTGCA--TAAAATATTT-C---T---TAGCAACAACCA-AT-A---TGTGAA-ATATCTATAGTGCG-TA--TATAAAA-A-C-ATGTTATCAA---AAT--AAATT-CTGAAATAC-------G-AAAA---a
gi|7 : A-GTCA--A---ATTTTTT---AACTCTG-A-A-TGAT--CA---------T-TTT---A-TAAATTC-A-AATGCCA--TTC-TCTT-GCA-T-ATGAT-CAAAA--------TTCA-G------AC--T-AA----GTTACA--TTAT--TTATAA--AGTAGTTATAATG--CT-C-AT-A---TTCCA-A-AGTTT-ACCTGCA--CAAAATACTC-C---T---TAGCAATAACCA-AT-ATTCTGTGACTATATCTATAATACGTTT--TAT---T-G-C-ATGTTATCAA---ATCG-A---T-CTGAAATGC-AT----G-AAAA---CC-ATTTTTT-GGTGTAATCTA-A----AATGGGGAAATAAAT-----T------GC-ATTAGAAATAAAAAAAAAAAAAAAAA--TT-C-GCC-----ACA---------ATT-------------------------CAT-GC---GAG-TC--T--G-A-CTG-C-GCTACC-TATTACG--CCAACACACGCACC-TACTT-C----GC---------C---------T---------G--A-------T---GTA---------A--AAC----TGT-AAAC-AAAT-GTCAAAGTGa
gi|8 : TTCG-TATT-CC--AGTATTAGTTG-C-ACGTGC-T-ATAAATAAAGA-------A-AAAA---A-ATA----TGTTAA-TTTACTT-TT-GAT-ATC-TTT--AATATT--GTT--G---CCTAGCAACGC-ATCAT-ACATAAT-GAA-CAATCA-A-ATTTTG-CATTTTCAT-AAA-TAT-TTCAAATGAAA--G----ACTG-AATG-GCCT--A---ATTTTTTA--AACT-AG-A-A-TGA-AAAA---------C-TTT---A-T
gi|8 : tAA--G----ACTG-AAAA-GTCT--A---ATTTTTTT--AAAT-AGAA-A-TGATAATACTTATCAACT-TTA---A-TTAATT-CA-ATTTGCA--TAT-TC-T-GCA-T-TTGAT-C-AAA--------TGCA--------AC--T-TA----T--ACATTTTAT--T--TA------------AATG--CT---AT-A--TTTTAA-T-AGTTT-A-CTTCACCC-AAATA-TC-CATTT---TGCCAACAACCA-AT-GT--cattactctaagactgaaaagtctaatttttttaaatagaaatgataatacttatcaactttaattaattcaatttgcatattctgcatttgatcaaatgcaacttatacattttatttaaatgctatattttaatagtttacttcacccaaatatccattttgccaacaaccaatgtg
gi|9 : tttcgtattccagtattagttgcacgtgctataaataaagaaaaaaaatatgttaatttacttttgatatctttaatattgttgcctagcaacgcatcatacataatgaacaatcaaattttgcattttcataaatatttcaaatgaaagactgaatggcctaattttttaaactagaatgaaaaactttatcattactctAGGC-AAT-TAATGGCCC---TCTTAACATTT--ACTCATTC---ATT-CC--AGTAG-AG--G-C-ACATGTGTTATAAA-----C-------G-AAAA---ACAT-----TGT-A--TTGAC-T-TT-GCT-ATCTTT---AAGATTG-GTT--GGCGCCTAGCA---C-ATCGACAAAA-AT-GAA-CAGATA-A-ATTATT-CATT-ACATTAAA-TAT-TCCAAATGCAA--G----ACTT-AAAA-GTCT--A---ATTTTTTA--AACT-TG-ATA-TG-TAATA-----------TTT---A-TAAATTCCA-AATGGCA--TTC-T-TT-GCA-T-ATGAT-C-AAA--------TTCA-G------AC--T-AA----G--ACA--TT-C--T--TAA----TAGAT-TAATG--CT-C-AT-A--TTTCCAGA-AG-TT-A-CTGCA--C-AAATg
Alignments
lowQualScore : 11 111111111111111 111 111 11111111111 11111111 11111111 1111111 3333333333333333333 1 2222222 22 1 1111111 11111 2222222222222 222222222 111 44444444444444444444444444444444444444444444444444444444444444 1
lowQualScore : 5 5 5 0 4 88 1 00 0 3 3 55 3 3 7 1 4 999999999999999 333 3 7777 3 3 3 3 3 3 88 3 777777 7 3 7 3 3 6 3 3 3 3 3 4 55 8888 4 3 555 666 0 444 44 3 3 3 55555555555 666 3 6 3 55 44 3 3 3 3 88888888 66666666 88 3 3333333 55 7777777777777777777 44 3 3 3 44 888 6 3 3 44 0 3 555 555 3 3 55 4 888 1111111 4 777 33 777 4 55 9999 3 777 5 5 5 66 5555555 00000 55 4 3 4 1 0 2 11 55 999 6666666666666 2 1 44 3 3 666 0 6 4 3 555 3 44 44 333 3 9 3 66 33 222222222 555 0 3 55555555555555555555555555555555555555555555555555555555555555 55 7777 2 4 4 0
lowQualScore : . . . . . .. . .. . . . .. . . . . . ............... ... . .... . . . . . . .. . ...... . . . . . . . . . . . . .. .... . . ... ... . ... .. . . . ........... ... . . . .. .. . . . . ........ ........ .. . ....... .. ................... .. . . . .. ... . . . .. . . ... ... . . .. . ... ....... . ... .. ... . .. .... . ... . . . .. ....... ..... .. . . . . . . .. .. ... ............. . . .. . . ... . . . . ... . .. .. ... . . . .. .. ......... ... . . .............................................................. .. .... . . . .
lowQualScore : 0 0 0 8 2 33 0 66 8 6 6 00 6 6 3 3 0 555555555555555 666 6 7777 6 6 6 6 6 6 66 6 444444 3 3 3 6 6 4 6 6 6 6 6 0 00 5555 0 6 222 444 2 666 11 6 6 6 00000000000 444 6 6 6 00 66 6 6 6 6 22222222 66666666 66 6 6666666 00 9999999999999999999 66 3 3 3 66 555 7 3 3 66 0 3 888 888 6 6 00 4 333 0000000 4 888 99 888 4 66 4444 3 888 0 9 0 99 4444444 00000 55 0 4 0 1 9 2 44 55 222 7777777777777 3 0 66 1 1 333 2 2 0 1 444 1 22 22 999 1 2 1 66 99 999999999 777 5 3 66666666666666666666666666666666666666666666666666666666666666 00 7777 0 0 4 4
consensus : AGGC-A-T-TAATGGCCCC-CTCTTNAAATTT--ACTCATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGTGT-ATAAA-----A-------G-AAAA---A-ATA----TGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTT--G---CCTAGCAACGC-ATCAA-ACAT-AT-GAA-CAATCA-A-ATTATT-CATTTACAT-AAA-TAT-TTCAAATGCAA--G----ACTT-AAAA-GTCT--A---ATTTTTTT--AACT-TG-A-A-TGATAATA---------T-TTT---A-TAAATTCCA-AATGGCA--TTN-TCTT-GCA-T-ATGAT-CAAAA--------TTCA-G------AC--T-AA----G--ACA--TTAT--T--TAA--AGTAGTTATAATG--CT-C-AT-A--TTTCCA-A-AG-TT-A-CTGCA--C-AAATACTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TA--TAT---C-G-C-ATGTTATCAA---ATC--A---T-CTGAAATGC-AT----G-AAAA---CC-ATNTGTT-GGTG--ATCT--A----AATGGGGAAATAAAT-----TATA--AGA-ATTAAAAA-AAAAAAAAAAAAAAAAA--TT-C-GCC-----ANA-T--CCGAGANTTG--AA-C-CG--GGTACCCT-CTTCAT-GC---GAG-TC--T--G-A-C-G-C-GCTACC-NATTACG--C---------CACC-TACTT-C----GC---------C---------T---------G--A-------T---GT----------A--AAT----TAT-AAAC-AAAA-GTCAAAGTGT
Reference ( family-616 ) : AGGC-A-T-TAATGGCCCC-CTCTTNAAATTT--ACTCATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGTGT-ATAAA-----A-------G-AAAA---A-ATA----TGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTT--G---CCTAGCAACGC-ATCAA-ACAT-AT-GAA-CAATCA-A-ATTATT-CATTTACAT-AAA-TAT-TTCAAATGCAA--G----ACTT-AAAA-GTCT--A---ATTTTTTT--AACT-TG-A-A-TGATAATA---------T-TTT---A-TAAATTCCA-AATGGCA--TTN-TCTT-GCA-T-ATGAT-CAAAA--------TTCA-G------AC--T-AA----G--ACA--TTAT--T--TAA--AGTAGTTATAATG--CT-C-AT-A--TTTCCA-A-AG-TT-A-CTGCA--C-AAATACTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TA--TAT---C-G-C-ATGTTATCAA---ATC--A---T-CTGAAATGC-AT----G-AAAA---CC-ATNTGTT-GGTG--ATCT--A----AATGGGGAAATAAAT-----TATA--AGA-ATTAAAAA-AAAAAAAAAAAAAAAAA--TT-C-GCC-----ANA-T--CCGAGANTTG--AA-C-CG--GGTACCCT-CTTCAT-GC---GAG-TC--T--G-A-C-G-C-GCTACC-NATTACG--C---------CACC-TACTT-C----GC---------C---------T---------G--A-------T---GT----------A--AAT----TAT-AAAC-AAAA-GTCAAAGTGT
gi|1 : AGGC-A-T-TAA-GACCCC-CTCTTAAAATTTC-ACTCATTCCGTATTTCC--ACTAGTA-T-G-CCACATG-GT-ATAAA-----A-------GTAAAAC--A-ATA--------AA-TTTAC-T-TG-ACT-AGTTTTTG-AATATTGCGTT--G---CCATGCAACTCCATCAA-ACAT-AT-GAA-CAATTA-ATCTTATT-CATTTACAT-AAA-TATGTTCAAATGCAA--GCTAGACTT-AAAA-GTCA--A---AATTTTTT--AACT-TG-A-A-TGATAATA---------TATTT---ATTAAATTCCATAAT-GCA--TTC-TCTT-GCA-T-ATGAT-CAAAA--------TTCAGG------AC--T-AAG---G--ACA--TTATTAT--TAATCAGTAGTTATAATGCCCT-C-AT-AAGTTTCCA-A-AT-TT-A-CTGCA--CAAAATACTCTC---T---TAGCAACAACCAGAT-AT--TGTCACTATAATCATAATACG-T---TAT-----G-C-ATGTTATCAA---ATCG-A---TCCTGAAATGCAAT----GCAAAA---CC-AT-TGTT-GGTG--ATCT--A----AATGGGGAAATAAATTGGTCTATT--AGA-A-TAACAG-AAAAAAAAAAAAAAAAA--TT-C-GCCA----AAA-T--TC-AGACATG--AA-A-CC--GGTGCCTT-CTTCATGGC---GAG-TC--T--G-A-C---C-GCTACCTTATTACG--CACAACACAGCACC-TACTTAC----GC---------C---------T---------G--A-------T---GT----------A--AAC----TGTAAAAC-AAAA-GTC
gi|10 : ga-AATGGCA--TCA-TCTT-GCA-TTATGAT-CAAA---------TTCA-A------AC--TTAA----G--ACA--TTA---------------------ATG--CT-C-AT-A--TTTCCA-T-AG-TT-A-CTGCA--C-AAATACTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TA--TAT---T-A-C-ATGTTATCAA---ATCA-A---T-CTGAAATGC-AT----GAAAAA---CC-ATATGTT-GGTG--ATCT--A----AAAGAGGAAATAAAT-----TATA--AGA-ATT--------AAAAAAAAAAAAAAA--TT-CTGCC-----GAA-A--ACGAGAATTG--AA-C-TG--GGTATAC--CTGCAT-GT---GAG-CC--T--G---C-GAC-GCTACC-CATTACG--C---------CACC--ACAT-C----AC---------T---------T---------
gi|11 : CC-CTCTTCAAATTT--ACACAATGC-TATA-CC--AGTAGTAAT-G-C-ACAGATGT-ATAAA-----T-------G-AAAAA--A-ATA----TGT-AA-TTTAC-T-TT-CAT-GTATTTT--TATGTTG-GTT--G---CCTAGCAACGC-ATCAA-CCAT-GT-TCA-CAATTA-A-GTTATT-CATTTTCAT-AAT-TAT-TTGAAATGCAA--
gi|12 : gaggtctttatgtaccctccaACTC-----T---TAAGAACCACCA-AT-AT--TGTGACTATATCTTTAAT--G-GA--TAT---TGG-CAATGTTATCAA---ATC--A---T-CTGAAATG--AT----G--AAA---CC-ATTTTTT-GGTG--AT-T--A----AATGGGGAAATAAA------TATA--AGAGATTAAAGA-AAAAAAAAAAAAGATAA-----C-GGTAG---ATA-T--TCAAAGATTG--AT-CGCC--GGTACCGT-CT--AT-GCACGAAA-TC--T--GAA-C-G-T-GCTACC-GATAGCGCAC---------CACA-T-CTT-CACCAAC---------C---------T---------G----------T---GT----------A--AAT----tattatcgaataaatgttttatatttacagatgactaagttaaaccatataccgtaatctaaaacagaag
gi|13 : aaaccaaA-ACATCAT-GAA-CAATTA-A-AT-ATT-C-TTTACAT-AAAATAT-TTCAAATGCAGCTG----AC-T-AAAA-GTA---A---ATTTTTTTAGAACT-T--A-A-TGATCA-A---------T-TTT---A-TAAATT-CA-AATGGC----TA-TCTT-GCC-A-ATGAG-CACAATG------TTCA-GA-----AC--T-AA----G--AC-----------------AGTA--TATG--G--CT-CAATAA--TTTCCC-A-AG-TT-T-CTGC---C-AAATACTC-C---T---
gi|14 : AGGC-G-T-TTATGACCCC-CTCTTTAAATGT--ACTTATTCC-TATT-CC--ATTAGTCGT-G-C-AAAAGTGT-ATAAA-----ATATAAATGCAAAA---A-ATA----CGT-AA-TTTAC-T-TTTGAT-ATCTTTT--AGTATTG-GCT--A---CCTAGCAACGC-ATAAA-ACAT-AT-GAA-CAATCA-A-ATGATT-CATTTTCAT-AAA-TA
gi|15 : AAATAAAT-----TATA--AGA-ATTTAAAA-AAAAAATAATAA----------T-GCT-----ACA-T--ACGAGAATTG--AA-C-CG--GGTACACT-CTTCAT-GC---AAG-TC--T--G-A-C-G-C-GCTACC-TATTACG--C---------CACC--ACGC-C----AC---------C---------TAATTCTTGCG--A-------T---GT----------A--AAT----TAT-AAAC-AAAA-GTC-AAGTGT
gi|16 : GGAAATAAAT-----TATA--AGA-ATTAAAAA-AAAA---------------TTAC-ACT-----ACT-T--CCGAGATGTG--AA-C-CA--GGTACCCT-CTTCAT-GC---AAG-TC--T--G-A-C-G-C-GCTACC-GATTACG--C---------CACCATGC---C----GCATACGAACGC---------C---------G--T-------T---GT----------A--AAT----TAT-AAAC-AAAA-GTCTAAGTGT
gi|17 : AGGCCA-TCTAATG---CC-CTCTTAAAATTTTCACTC-TTCC-TATT-TCCGAGT-GTAGA-G-TTACATGTGT-ATAAA-----A-------G-AAAA---A-AAAAAAATGT-AA-TTTAC-TCTT-GCA-CTCTTTT--AATATTG-GTT--G---CCTAGCAACGC-AT-AA-ACA
gi|18 : A--GGA-AATATAAA-ATGATAAAAAAAAAACAGTTT-CTGCA-----AG------CAGGATTTG--AACC-CG--GGTCGTCTACCTCGC-GC---AA------C--G-G-C-GAC-GTTACC-TATTACG--C---------TA
gi|19 : aaaaaATTTG--AA-C-CA--ACAACCTA-CTGCTT-GA---AAGATCAAT--G-A-C-G-CTATTACC--ATTACG--C----------ATC--ATTT-C----GC---------T---------T---------GCAA-------T---GC----------ATTAATATTTTAT-AAAC-AA
gi|2 : agaAGGC-A-T-TAATGGCCCC--TCT-AAAATTT--A-TCATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGTGT-ATAAA-----A-------G-AAAA---A-ATA----TGT-AAATTTAC-T-TT-GTTTATCTTTTTTAATATTG-GTT--G---CCTAGCAACAC-ATCAA-ACAT-ATTGAA-CAAT-A-A-ATTATTTCATTTA-AT-AAA-T-T-TTCAAATGCAA--G----ACTT-AAAAAGTCT--A---ATTTTTT---AACT-TG-A-AATGATAATA---------T-TT----A-TAAATTCCA-AATTGCA--TTTATCTTTGCAAT-ATGATTCAAAA--------TTCA-G------AC--T-AA----GGGACA-----------------------GTAATG--CT-C-AT-A--TTTCCA-A-AG----A-CTGCA--C-AAATACTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TACTTAT---T-GGC-ATGTTATCAA---ATTCAA---T-CTGAAATG--AT----G-AAAA---CCCATTTGTTTGGTG--ATTC--G----AATGGGGAAATAAAT-----TATA--AGA-ATTAAAAA-AAAAAAAAA----------TTAC-GCCGCGGGATA-TTTCCGAGAATTGGAAA-C-TG--GGTACCCT-CTTCAT-GC---GCG-TC--TTTG-A-C-G-C-GCTACC-GATTACG--C---------CACCACACCA-C----AT---------A---------T---------G--ACCCTCGTT---GT----------A--AAT----TATTAAAC-AAAA-GTCAAAGTtc
gi|20 : gTAATG--CTTC-AT-A--TTTCCA-ATAG-TTTA-CTTCA--C-AAATACTA-C---TCCATTGCAACAACCA-ATGGT--TGTGAtg
gi|21 : tC-CACCACG--C---------CACC-TACTT-C----TC---------C-------------------A--A-------TACAGT----------A--AA-----TAT-AAACAAAAA-GTCAAAGTGT
gi|22 : gA-C-CG--GGTACCTT-CTTCAT-GC---GAG-TC--T--G-A-C-G-A-GCTACC-AATTACG--C---------
gi|23 : CATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGT
gi|3 : AGGC-A-T-TTATGGCCCC-CTCTTCAAACTT--ACTCATTCC-TATT-CC--TGTAGTAGT-G-C-ACATGTGT-ATAAA-----A-------G-AAAACAAA-ATA----TGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTT--G---CTTAGCAACGC-ATCAA-ACAT-AT-GAA-CAATCA-A-ATTATT-CATTTACAT-AGA-TAT-TTCAAATGCAA--G----ACTT-AAAA-GTCTAAA---AACATTTT--AACT-AG-A-A-TGATAATA---------T-TTTAAAA-CAAATGTCA-ATTGGCA--TTA-TCCT-GCA-T-ATGAT-CAAAA--------TTCA-A------ACT-T-TA----G--ACA--TTAT--C--TAA--AGTTGT--TAATG--CT-C-AC-A--TTTCCA-T-AG-TT-A-CTTCA--C-AAATACTC-C---T---TAGCAACAACCA-AT-AT--TGTGAATATATCTATAATACG-TA--TAA---C-A-C-ATGTTATCAATGGA----A---T-CTGAAATAC-ATGGGGG-AAAAACCCC-AGATACT-GGTG--ATCTTAA----AGTGGGGAA--AAAT-----TGT
gi|3 : gGATTTG--AA-C-CGTGGGT---CTACTGCTT-GT---GAA-CC--T--G-AGC-A-C-GCTACC-TATTGCT--C---------CATC--ACTT-C----AA---------T---------T------------A-------C---GTCAATTTCCGGA--AAT----TATAAAAC-AAAATGTCAAAgggttttttttaaatcgccctcaacaggatttgaaccgtgggtctactgcttgtgaacctgagcacgctacctattgctccatcacttcaattacgtcaatttccggaaattataaaacaaaatgtcaaat
gi|4 : gaggcatttatggccccctcttcaaacttactcattcctattcctgtagtagtgcacatgtgtataaaagaaaacaaaatatgtaatttactttgctatcttttaatattggttgcttagcaacgcatcaaacatatgaacaatcaaattattcatttacatagatatttcaaatgcaagacttaaaagtctaaaaacattttaactagaatgataatattttaaaacaaatgtcaattggcattatcctgcatatgatcaaaattcaaactttagacattatctaaagttgttaatgctcacatttccatagttacttcacaaatactccttagcaacaaccaatattgtgaatatatctataatacgtataacacatgttatcaatggaatctgaaatacatgggggaaaaaccccagatactggtgatcttaaagtggggaaaaattgtgggttttttttaaatcgccctcaacagAGGC-A-T-TAATGACCCC--TCTTAAAATTT--ACTCATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGTGT-ATAAA-----A-------G-AAAA---A-ATA----TGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTT------CCTAGCAACGC-ATCAA-ACAT-AT-GAA-CAAT---A-ATTATT-CATTTGCAT-AAA-TAT-TTCAAATGCAA--G----ACTT-AAAA-GTCT--A---ATTTTTTT--AACT-TG-A-A-TGATAATA---------T-TTT---A-TAAGTTCCA-AATGCCA--TTC-TCTT-GCA-T-ATGAT-CAAAA--------TTCA-G------AC--T-AA----G--ACA--TTAT--T--TAA--AGTAGTTATAATG--CT-C-AT-A--TTTCCA-A-AG-TT-A-CTGCA--C-AAATTCTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TT--TAT---T-G-C-ATGTTATCAA---ATC--A---T-CTGAAATGC-AT----G-AAAA---CC-ATTTGTT-GGTG--ATCT--A----AAT-GGGAAATAAAT-----TGTATTAGA-ATAAAAAA-AAAAAAAAAAAAAAAAA--TT-T-GCC-----AAA-T--CCGTGAATTG--AA-C-C---GGTACCTT-CTTCAT-GC---GAG-TC--T--G-A-C-G-C-TCTACC-AA-CACG--C---------CACC-TACTT-C----GC---------C---------T---------G--A-------T---GT----------A--AAC----TGT-AAAC--AAA-GTCAAAGTGTt
gi|5 : -AAAA---A-ATA----TGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTT--G---CCTACCAACGC-ATCAA-ACAT-AT-TTA-CAATCA-A--TTATT-CATTTACAT-AAA-TAT-TTCAAATGCAA--G----ACTTAAAAA-GTCT--A---A-TTTTTT--AACT-TG-A-A-TGATAATA---------T-TTT---A-TAAATTCCA-AATGGCA--TTA-TCTT-GCA-T-ATGAT-CAAAA--------TTCA-A------ACAAT-AA----G--ACA--TTAT--T--T-A--AGTAGTTA-AATG--CT-C-AT-A--TTTCCA-T-AG-TT-A-CTGCA--C-AAATACTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TA--TAT---C-A-C-ATGTTATCAA---ATCA-A---T-CTGAAATGC-AT----GAAAAA---CC-ATATGCT-GGTG--ATCT--AAAAGAAAGGGGAAGTAAAT-----TATA--AGA-ATT----------TAAAAAAAAAAAA--TT-C-CGC-----AGATT--TCAGGACTTG--AA-C-CG--GGGACTCT-CAGCAT-GT---GAG-CC--T--G-C-C-GAC-ACTACT-TACTACG--C---------CACC-T-TTT-C----AT---------CTATAAATTAT---------G--A-------T---GT----------A--AAT----TAC-ATAC-AAAA-GTCAAA
gi|6 : AGGC-A-T-TTATGACCCAACTCTTTCAAATT--ACTC-CTCC-TATT-CT--ACTAGTGGT-GGC-ACATG------AAC-----A-------A-AATG---T-ACA----TGT-CA-TTTAC-T-TT-GCT-ATCTTT---GATAT-G-GTTTTG---CCCAGCAACGCGATGAA-ACAT-AT-GAAACAATTACA-ATTGTT-TATTTACAT-AAT-TTT-TTCAA-TG-AA--G----ACTT-AAAA-GTAT--ATATATTCTTTTTAAACT-AG-A-A-TGATACTA---------T-TTT---A-TAAATT-CA-AATGGCAATTTA-TCCT-GCA-T-ATGAT-CAAAATGTTTTTTTTTG-GGAAAAAAA--T-AATCTTG--ACA--TTAT--TC-TAA--ATTGGT--TAATG--TT-C-AT-A--TTTCCA-T-AG-TC-A-TTGCA--TAAAATATTT-C---T---TAGCAACAACCA-AT-A---TGTGAA-ATATCTATAGTGCG-TA--TATAAAA-A-C-ATGTTATCAA---AAT--AAATT-CTGAAATAC-------G-AAAA---a
gi|7 : A-GTCA--A---ATTTTTT---AACTCTG-A-A-TGAT--CA---------T-TTT---A-TAAATTC-A-AATGCCA--TTC-TCTT-GCA-T-ATGAT-CAAAA--------TTCA-G------AC--T-AA----GTTACA--TTAT--TTATAA--AGTAGTTATAATG--CT-C-AT-A---TTCCA-A-AGTTT-ACCTGCA--CAAAATACTC-C---T---TAGCAATAACCA-AT-ATTCTGTGACTATATCTATAATACGTTT--TAT---T-G-C-ATGTTATCAA---ATCG-A---T-CTGAAATGC-AT----G-AAAA---CC-ATTTTTT-GGTGTAATCTA-A----AATGGGGAAATAAAT-----T------GC-ATTAGAAATAAAAAAAAAAAAAAAAA--TT-C-GCC-----ACA---------ATT-------------------------CAT-GC---GAG-TC--T--G-A-CTG-C-GCTACC-TATTACG--CCAACACACGCACC-TACTT-C----GC---------C---------T---------G--A-------T---GTA---------A--AAC----TGT-AAAC-AAAT-GTCAAAGTGa
gi|8 : TTCG-TATT-CC--AGTATTAGTTG-C-ACGTGC-T-ATAAATAAAGA-------A-AAAA---A-ATA----TGTTAA-TTTACTT-TT-GAT-ATC-TTT--AATATT--GTT--G---CCTAGCAACGC-ATCAT-ACATAAT-GAA-CAATCA-A-ATTTTG-CATTTTCAT-AAA-TAT-TTCAAATGAAA--G----ACTG-AATG-GCCT--A---ATTTTTTA--AACT-AG-A-A-TGA-AAAA---------C-TTT---A-T
gi|8 : tAA--G----ACTG-AAAA-GTCT--A---ATTTTTTT--AAAT-AGAA-A-TGATAATACTTATCAACT-TTA---A-TTAATT-CA-ATTTGCA--TAT-TC-T-GCA-T-TTGAT-C-AAA--------TGCA--------AC--T-TA----T--ACATTTTAT--T--TA------------AATG--CT---AT-A--TTTTAA-T-AGTTT-A-CTTCACCC-AAATA-TC-CATTT---TGCCAACAACCA-AT-GT--cattactctaagactgaaaagtctaatttttttaaatagaaatgataatacttatcaactttaattaattcaatttgcatattctgcatttgatcaaatgcaacttatacattttatttaaatgctatattttaatagtttacttcacccaaatatccattttgccaacaaccaatgtg
gi|9 : tttcgtattccagtattagttgcacgtgctataaataaagaaaaaaaatatgttaatttacttttgatatctttaatattgttgcctagcaacgcatcatacataatgaacaatcaaattttgcattttcataaatatttcaaatgaaagactgaatggcctaattttttaaactagaatgaaaaactttatcattactctAGGC-AAT-TAATGGCCC---TCTTAACATTT--ACTCATTC---ATT-CC--AGTAG-AG--G-C-ACATGTGTTATAAA-----C-------G-AAAA---ACAT-----TGT-A--TTGAC-T-TT-GCT-ATCTTT---AAGATTG-GTT--GGCGCCTAGCA---C-ATCGACAAAA-AT-GAA-CAGATA-A-ATTATT-CATT-ACATTAAA-TAT-TCCAAATGCAA--G----ACTT-AAAA-GTCT--A---ATTTTTTA--AACT-TG-ATA-TG-TAATA-----------TTT---A-TAAATTCCA-AATGGCA--TTC-T-TT-GCA-T-ATGAT-C-AAA--------TTCA-G------AC--T-AA----G--ACA--TT-C--T--TAA----TAGAT-TAATG--CT-C-AT-A--TTTCCAGA-AG-TT-A-CTGCA--C-AAATg
blockSeqs : C A C A AC C TC . . CG T G T T T ATATAAATGC CAA C AAAA T A T C T T TT . GGCG G C C T A T C . T T A . CT . A A TAA TAT TAG CT A T A CTTATCAACT AAA . C . AT TA T A T T TGTTTTTT GGAAAAA AA T TCTTG TT TTTATAAAGTAGTTA . T A A . AT T T C CC A . ATT CCA . G TC T ACT AAAAA A TGG CA AAT . C GGGG A ACC C A T TA AAAAG . TT G A T A A AA GT CT GCGGGATATTTC G A GA C G GTG A G . ACG A AA TT AA T A T C CA CAACACACG ATG . ACCTAATTCTTGCGATGT TT ATTT T A T
blockSeqs : . . . G C T . . . . . . . T . TAAAGAA A . . . . . . . . . . TTG . . A . . T . . . . . . . . . . T . TTA T . . . T . . T . . A . . . . TG GA T . GGG . TTTAAAGTAGTTA . . . . . GA T . . . A . . . . . . . A TGG . . A . . C . A . . T . . TAA . . . T . A G TA . AC AGATATT A A . . . G A T . . . . . AG . A . G . . ACA . GCATACGAACGCCGTTGT . . A . .
blockSeqs : . . . G C A . . . . . . . T . TG . . . . . . . . . . . G . . . . . C . . . . . . . . . . T . T T . . . T . . C . . A . . . . . A . . GTT . TTTAAGTAGTTA . . . . . T . . . . . . . . . . . . A TGG . . A . . C . . . . T . . AA . . . A . A A AC . CT AGATTT G A . . . C . T . . . . . A . A . T . . TA . AATTACGTCAATTTCCGG . . . . .
blockSeqs : . . . A C A . . . . . . . T . AG . . . . . . . . . . . A . . . . . C . . . . . . . . . . T . T A . . . T . . C . . A . . . . . G . . G . TTCTAAATTGGT . . . . . A . . . . . . . . . . . . A TA . . G . . C . . . . A . . A . . . A . T A AA . AC GAAAA G T . . . G . T . . . . . A . . . G . . TA . ATCTATAAATTATGATGT . . . . .
blockSeqs : . . . A C C . . . . . . . T . AG . . . . . . . . . . . G . . . . . C . . . . . . . . . . T . T T . . . T . . C . . C . . . . . A . . G . TCTAAAGTTGT . . . . . A . . . . . . . . . . . . T CA . . . . . C . . . . T . . A . . . A . A A AA . C ACATA A T . . . A . G . . . . . G . . . T . . TA . ATATGACCCTCGTTGT . . . . .
blockSeqs : . . . G . A . . . . . . . T . AG . . . . . . . . . . . G . . . . . T . . . . . . . . . . A . A T . . . T . . C . . A . . . . . G . . G . CTTAATAGAT . . . . . T . . . . . . . . . . . . A TG . . . . . C . . . . A . . G . . . A . A A AA . T ACTTC G T . . . G . T . . . . . A . . . G . . A . ACCAACCTGTGT . . . . .
blockSeqs : . . . . . T . . . . . . . T . AG . . . . . . . . . . . G . . . . . C . . . . . . . . . . T . T A . . . T . . . . . A . . . . . A . . G . AGTATA . . . . . A . . . . . . . . . . . . A CA . . . . . . . . . . T . . A . . . A . T . . . T AAATC G A . . . A . T . . . . . A . . . C . . T . GCTTGCAATGC . . . . .
blockSeqs : . A . . . . . . . C . AA . . . . . . . . . . . G . . . . . T . . . . . . . . . . T . A A . . . T . . . . . C . . . . . G . . G . TTTA . . . . . T . . . . . . . . . . . . T TG . . . . . . . . . . . . . . A . . . C ACA A T . . . G . G . . . . . A . . . A . . A . TCCAATACAGT . . . . .
blockSeqs : . . . . . . T . CG . . . . . . . . . . . G . . . . . . . . . . . . . . . . T . . A . . . C . . . . . T . . . . . G . . T . G . . . . . T . . . . . . . . . . . . . . . . . . . . C AG . A . . . G . T . . . . . A . . . T . . A . GCCTGATGTA . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . C . . . . . . . . G . . . . . . . A . . . . . . . . . . . C . . . G . G . . . . . C . . . A . . A . GCCTGATGT . .
blockSeqs : . . . . . . T . . . . . . . . T . . . . . . . . . . . A . . . T . . T .
blockSeqs : . . . . . . . . . . . . . . T . .
blockSeqs : . . .
blockSeqCons : ** AG************* *** ** **** T********** G******* G****** TTTAAAGTAGTTA****** ** ** A** CG***** ** C* ***** ANATN******** N* ********* A**
originalCons : AGGC-A-T-TAATGGCCCC-CTCTTNAAATTT--ACTCATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGTGT-ATAAA-----A-------G-AAAA---A-ATA----TGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTT--G---CCTAGCAACGC-ATCAA-ACAT-AT-GAA-CAATCA-A-ATTATT-CATTTACAT-AAA-TAT-TTCAAATGCAA--G----ACTT-AAAA-GTCT--A---ATTTTTTT--AACT-TG-A-A-TGATAATA---------T-TTT---A-TAAATTCCA-AATGGCA--TTN-TCTT-GCA-T-ATGAT-CAAAA--------TTCA-G------AC--T-AA----G--ACA--TTAT--T--TAA--AGTAGTTATAATG--CT-C-AT-A--TTTCCA-A-AG-TT-A-CTGCA--C-AAATACTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TA--TAT---C-G-C-ATGTTATCAA---ATC--A---T-CTGAAATGC-AT----G-AAAA---CC-ATNTGTT-GGTG--ATCT--A----AATGGGGAAATAAAT-----TATA--AGA-ATTAAAAA-AAAAAAAAAAAAAAAAA--TT-C-GCC-----ANA-T--CCGAGANTTG--AA-C-CG--GGTACCCT-CTTCAT-GC---GAG-TC--T--G-A-C-G-C-GCTACC-NATTACG--C---------CACC-TACTT-C----GC---------C---------T---------G--A-------T---GT----------A--AAT----TAT-AAAC-AAAA-GTCAAAGTGT
finalCons : AGGC-A-T-TAATGGCCCC-CTCTTNAAATTT--ACTCATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGTGT-ATAAAAG-------------AAAA---A-ATA----TGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTT--G---CCTAGCAACGC-ATCAA-ACAT-AT-GAA-CAATCA-A-ATTATT-CATTTACAT-AAA-TAT-TTCAAATGCAA--G----ACTT-AAAA-GTCT--A---ATTTTTTT--AACT-TG-A-A-TGATAATAT----------TTT---A-TAAATTCCA-AATGGCA--TTN-TCTT-GCA-T-ATGAT-CAAAA--------TTCAG-------AC--T-AAG------ACA--TTATTTAAAGTAGTTA------TAATG--CT-C-AT-A--TTTCCA-A-AG-TT-A-CTGCA--C-AAATACTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TA--TATCG-----C-ATGTTATCAA---ATC--A---T-CTGAAATGC-AT----G-AAAA---CC-ATNTGTT-GGTG--ATCT--A----AATGGGGAAATAAAT-----TATA--AGA-ATTAAAAA-AAAAAAAAAAAAAAAAA--TT-C-GCCANATN--------CGAGANTTG--AA-C-CG--GGTACCCT-CTTCAT-GC---GAG-TC--T--G-A-C-G-C-GCTACCN-ATTACG--C---------CACCA--CTT-C----GC---------C---------T---------G--A-------T---GT----------A--AAT----TAT-AAAC-AAAA-GTCAAAGTGT
Alignments
lowQualScore : 11 111111111111111 111 111 11111111111 11111111 111111 11 33333333333333333 2222222 22 1 1111111 11111 2222222222222 111111111 1111111111 1 44444444444444444444444444444444444444444444444444444444444444 1
lowQualScore : 5 5 5 0 4 88 1 00 0 3 3 55 3 3 7 1 4 999999999999999 333 3 7777 3 3 3 3 3 3 88 3 777777 7 3 7 3 3 6 3 3 3 3 3 4 55 8888 4 3 555 666 0 444 44 3 3 3 55555555555 666 3 6 3 55 44 3 3 3 3 88888888 777777 88 3 7777 33 55 77777777777777777 44 3 3 3 44 888 6 3 3 44 6 3 3 555 555 3 3 55 4 888 1111111 4 777 33 777 4 1 4 9999 3 777 5 5 5 66 5555555 00000 55 4 3 4 1 0 2 11 0 8 4 1111111111111 2 1 44 3 3 666 0 6 4 3 555 3 44 44 333 3 9 3 66 111111111 3333333333 0 555 3 88888888888888888888888888888888888888888888888888888888888888 55 7777 2 8 0
lowQualScore : . . . . . .. . .. . . . .. . . . . . ............... ... . .... . . . . . . .. . ...... . . . . . . . . . . . . .. .... . . ... ... . ... .. . . . ........... ... . . . .. .. . . . . ........ ...... .. . .... .. .. ................. .. . . . .. ... . . . .. . . . ... ... . . .. . ... ....... . ... .. ... . . . .... . ... . . . .. ....... ..... .. . . . . . . .. . . . ............. . . .. . . ... . . . . ... . .. .. ... . . . .. ......... .......... . ... . .............................................................. .. .... . . .
lowQualScore : 0 0 0 8 2 33 0 66 8 6 6 00 6 6 3 3 0 555555555555555 666 6 7777 6 6 6 6 6 6 66 6 444444 3 3 3 6 6 4 6 6 6 6 6 0 00 5555 0 6 222 444 2 666 11 6 6 6 00000000000 444 6 6 6 00 66 6 6 6 6 22222222 777777 66 6 7777 66 00 99999999999999999 66 3 3 3 66 555 7 3 3 66 7 3 3 888 888 6 6 00 4 333 0000000 4 888 99 888 4 1 4 4444 3 888 0 9 0 99 4444444 00000 55 0 4 0 1 9 2 44 7 0 0 1111111111111 3 0 66 1 1 333 2 2 0 1 444 1 22 22 999 1 2 1 66 444444444 5555555555 0 888 3 99999999999999999999999999999999999999999999999999999999999999 00 7777 0 9 4
consensus : AGGC-A-T-TAATGGCCCC-CTCTTNAAATTT--ACTCATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGTGT-ATAAA-----A-------G-AAAA---A-ATA----TGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTT--G---CCTAGCAACGC-ATCAA-ACAT-AT-GAA-CAATCA-A-ATTATT-CATTTACAT-AAA-TAT-TTCAAATGCAA--G----ACTT-AAAA-GTCT--A---ATTTTTTT--AACT-TG-A-A-TGATAATA---------T-TTT---AT-AAATTCCA-AATGGCA--TTN-TCTT-GCA-T-ATGAT-CAAAA--------TTCAG------AC--T-AA----G--ACA--TTATT--TAA--AGTAGTTATAATGC--T-C-AT-A--TTTCCA-A-AG-TT-A-CTGCA--C-AAA-TACTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TA--TAT---C-G-C-ATGTTATCAA---ATC--A---TC-TGAAATGCA-T----G-AAAA---CC-ATNTGTT-GGTG--ATCT--A----AATGGGGAAATAAATT-----ATA--AGA-ATTAAAAA-AAAAAAAAAAAAAAAAATT-C-GCC-----ANA-TN--CGAGANTTG--AA-C-CG--GGTACCCT-CTTCAT-GC---GAG-TC--T--G-A-C-G-C-GCTACC-NATTACGC---------CA----------CC-A---CTT-C----GC---------C---------T---------G--A-------T---GT----------A--AAT----TAT-AAACAAAA-GTCAAAGTGT
Reference ( family-616 ) : AGGC-A-T-TAATGGCCCC-CTCTTNAAATTT--ACTCATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGTGT-ATAAA-----A-------G-AAAA---A-ATA----TGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTT--G---CCTAGCAACGC-ATCAA-ACAT-AT-GAA-CAATCA-A-ATTATT-CATTTACAT-AAA-TAT-TTCAAATGCAA--G----ACTT-AAAA-GTCT--A---ATTTTTTT--AACT-TG-A-A-TGATAATA---------T-TTT---AT-AAATTCCA-AATGGCA--TTN-TCTT-GCA-T-ATGAT-CAAAA--------TTCAG------AC--T-AA----G--ACA--TTATT--TAA--AGTAGTTATAATGC--T-C-AT-A--TTTCCA-A-AG-TT-A-CTGCA--C-AAA-TACTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TA--TAT---C-G-C-ATGTTATCAA---ATC--A---TC-TGAAATGCA-T----G-AAAA---CC-ATNTGTT-GGTG--ATCT--A----AATGGGGAAATAAATT-----ATA--AGA-ATTAAAAA-AAAAAAAAAAAAAAAAATT-C-GCC-----ANA-TN--CGAGANTTG--AA-C-CG--GGTACCCT-CTTCAT-GC---GAG-TC--T--G-A-C-G-C-GCTACC-NATTACGC---------CA----------CC-A---CTT-C----GC---------C---------T---------G--A-------T---GT----------A--AAT----TAT-AAACAAAA-GTCAAAGTGT
gi|1 : AGGC-A-T-TAA-GACCCC-CTCTTAAAATTTC-ACTCATTCCGTATTTCC--ACTAGTA-T-G-CCACATG-GT-ATAAA-----A-------GTAAAAC--A-ATA--------AA-TTTAC-T-TG-ACT-AGTTTTTG-AATATTGCGTT--G---CCATGCAACTCCATCAA-ACAT-AT-GAA-CAATTA-ATCTTATT-CATTTACAT-AAA-TATGTTCAAATGCAA--GCTAGACTT-AAAA-GTCA--A---AATTTTTT--AACT-TG-A-A-TGATAATA---------TATTT---ATTAAATTCCATAATG-CA--TTC-TCTT-GCA-T-ATGAT-CAAAA--------TTCAGG-----AC--T-AA----GG-ACA--TTATTATTAATCAGTAGTTATAATGCCCT-C-AT-AAGTTTCCA-A-AT-TT-A-CTGCA--C-AAAATACTCTC---T---TAGCAACAACCAGAT-AT--TGTCACTATAATCATAATACG-T---TAT-----G-C-ATGTTATCAA---ATCG-A---TCCTGAAATGCAAT----GCAAAA---CC-AT-TGTT-GGTG--ATCT--A----AATGGGGAAATAAATTGGTCTATT--AGA-AT-AACAG-AAAAAAAAAAAAAAAAATT-C-GCCA----AAA-TT--C-AGACATG--AA-A-CC--GGTGCCTT-CTTCATGGC---GAG-TC--T--G-A-C---C-GCTACCTTATTACGCACAACACAGCA----------CCTA---CTTAC----GC---------C---------T---------G--A-------T---GT----------A--AAC----TGTAAAACAAAA-GTC
gi|10 : ga-AATGGCA--TCA-TCTT-GCA-TTATGAT-CAAA---------TTCAA------AC--TTAA----G--ACA--TTA-------------------ATGC--T-C-AT-A--TTTCCA-T-AG-TT-A-CTGCA--C-AAA-TACTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TA--TAT---T-A-C-ATGTTATCAA---ATCA-A---TC-TGAAATGCA-T----GAAAAA---CC-ATATGTT-GGTG--ATCT--A----AAAGAGGAAATAAATT-----ATA--AGA-ATT--------AAAAAAAAAAAAAAATT-CTGCC-----GAA-AA--CGAGAATTG--AA-C-TG--GGTATAC--CTGCAT-GT---GAG-CC--T--G---C-GAC-GCTACC-CATTACGC---------CA----------CC-A---CAT-C----AC---------T---------T---------
gi|11 : CC-CTCTTCAAATTT--ACACAATGC-TATA-CC--AGTAGTAAT-G-C-ACAGATGT-ATAAA-----T-------G-AAAAA--A-ATA----TGT-AA-TTTAC-T-TT-CAT-GTATTTT--TATGTTG-GTT--G---CCTAGCAACGC-ATCAA-CCAT-GT-TCA-CAATTA-A-GTTATT-CATTTTCAT-AAT-TAT-TTGAAATGCAA--
gi|12 : gaggtctttatgtaccctccaACTC-----T---TAAGAACCACCA-AT-AT--TGTGACTATATCTTTAAT--G-GA--TAT---TGG-CAATGTTATCAA---ATC--A---TC-TGAAATG-A-T----G--AAA---CC-ATTTTTT-GGTG--AT-T--A----AATGGGGAAATAAA-T-----ATA--AGAGATTAAAGA-AAAAAAAAAAAAGATAA---C-GGTAG---ATA-TT--CAAAGATTG--AT-CGCC--GGTACCGT-CT--AT-GCACGAAA-TC--T--GAA-C-G-T-GCTACC-GATAGCG----------CA----------CC-ACATCTT-CACCAAC---------C---------T---------G----------T---GT----------A--AAT----tattatcgaataaatgttttatatttacagatgactaagttaaaccatataccgtaatctaaaacagaag
gi|13 : aaaccaaA-ACATCAT-GAA-CAATTA-A-AT-ATT-C-TTTACAT-AAAATAT-TTCAAATGCAGCTG----AC-T-AAAA-GTA---A---ATTTTTTTAGAACT-T--A-A-TGATCA-A---------T-TTT---AT-AAATT-CA-AATGGC----TA-TCTT-GCC-A-ATGAG-CACAATG------TTCAGA-----AC--T-AA----G--AC---------------AGTA--TATG--GC--T-CAATAA--TTTCCC-A-AG-TT-T-CTGC---C-AAA-TACTC-C---T---
gi|14 : AGGC-G-T-TTATGACCCC-CTCTTTAAATGT--ACTTATTCC-TATT-CC--ATTAGTCGT-G-C-AAAAGTGT-ATAAA-----ATATAAATGCAAAA---A-ATA----CGT-AA-TTTAC-T-TTTGAT-ATCTTTT--AGTATTG-GCT--A---CCTAGCAACGC-ATAAA-ACAT-AT-GAA-CAATCA-A-ATGATT-CATTTTCAT-AAA-TA
gi|15 : AAATAAATT-----ATA--AGA-ATTTAAAA-AAAAAATAATAA--------T-GCT-----ACA-TA--CGAGAATTG--AA-C-CG--GGTACACT-CTTCAT-GC---AAG-TC--T--G-A-C-G-C-GCTACC-TATTACGC---------CA----------CC-A---CGC-C----AC---------C---------TAATTCTTGCG--A-------T---GT----------A--AAT----TAT-AAACAAAA-GTC-AAGTGT
gi|16 : GGAAATAAATT-----ATA--AGA-ATTAAAAA-AAAA-------------TTAC-ACT-----ACT-TC--CGAGATGTG--AA-C-CA--GGTACCCT-CTTCAT-GC---AAG-TC--T--G-A-C-G-C-GCTACC-GATTACGC---------CA----------CC-A---TGC-C----GCATACGAACGC---------C---------G--T-------T---GT----------A--AAT----TAT-AAACAAAA-GTCTAAGTGT
gi|17 : AGGCCA-TCTAATG---CC-CTCTTAAAATTTTCACTC-TTCC-TATT-TCCGAGT-GTAGA-G-TTACATGTGT-ATAAA-----A-------G-AAAA---A-AAAAAAATGT-AA-TTTAC-TCTT-GCA-CTCTTTT--AATATTG-GTT--G---CCTAGCAACGC-AT-AA-ACA
gi|18 : A--GGA-AATATAAA-ATGATAAAAAAAAAACAGT-T-TCT-----GCA-AG--CAGGATTTG--AACC-CG--GGTCGTCTACCTCGC-GC---AA------C--G-G-C-GAC-GTTACC-TATTACGC---------TA----------
gi|19 : aaaaaATTTG--AA-C-CA--ACAACCTA-CTGCTT-GA---AAGATCAAT--G-A-C-G-CTATTACC--ATTACGC----------A----------TC-A---TTT-C----GC---------T---------T---------GCAA-------T---GC----------ATTAATATTTTAT-AAACAA
gi|2 : agaAGGC-A-T-TAATGGCCCC--TCT-AAAATTT--A-TCATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGTGT-ATAAA-----A-------G-AAAA---A-ATA----TGT-AAATTTAC-T-TT-GTTTATCTTTTTTAATATTG-GTT--G---CCTAGCAACAC-ATCAA-ACAT-ATTGAA-CAAT-A-A-ATTATTTCATTTA-AT-AAA-T-T-TTCAAATGCAA--G----ACTT-AAAAAGTCT--A---ATTTTTT---AACT-TG-A-AATGATAATA---------T-TT----AT-AAATTCCA-AATTGCA--TTTATCTTTGCAAT-ATGATTCAAAA--------TTCAG------AC--T-AA----GGGACA---------------------GTAATGC--T-C-AT-A--TTTCCA-A-AG----A-CTGCA--C-AAA-TACTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TACTTAT---T-GGC-ATGTTATCAA---ATTCAA---TC-TGAAATG-A-T----G-AAAA---CCCATTTGTTTGGTG--ATTC--G----AATGGGGAAATAAATT-----ATA--AGA-ATTAAAAA-AAAAAAAAA--------TTAC-GCCGCGGGATA-TTTCCGAGAATTGGAAA-C-TG--GGTACCCT-CTTCAT-GC---GCG-TC--TTTG-A-C-G-C-GCTACC-GATTACGC---------CA----------CC-A---CAC-C----AC---------A---------TAT-------G--ACCCTCGTT---GT----------A--AAT----TATTAAACAAAA-GTCAAAGTtc
gi|20 : gTAATGC--TTC-AT-A--TTTCCA-ATAG-TTTA-CTTCA--C-AAA-TACTA-C---TCCATTGCAACAACCA-ATGGT--TGTGAtg
gi|21 : tC-CACCACGC---------CA----------CCTA---CTT-C----TC---------C-------------------A--A-------TACAGT----------A--AAT-----AT-AAACAAAAAGTCAAAGTGT
gi|22 : gA-C-CG--GGTACCTT-CTTCAT-GC---GAG-TC--T--G-A-C-G-A-GCTACC-AATTACGC---------
gi|23 : CATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGT
gi|3 : AGGC-A-T-TTATGGCCCC-CTCTTCAAACTT--ACTCATTCC-TATT-CC--TGTAGTAGT-G-C-ACATGTGT-ATAAA-----A-------G-AAAACAAA-ATA----TGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTT--G---CTTAGCAACGC-ATCAA-ACAT-AT-GAA-CAATCA-A-ATTATT-CATTTACAT-AGA-TAT-TTCAAATGCAA--G----ACTT-AAAA-GTCTAAA---AACATTTT--AACT-AG-A-A-TGATAATA---------T-TTTAAAAC-AAATGTCA-ATTGGCA--TTA-TCCT-GCA-T-ATGAT-CAAAA--------TTCAA------ACT-T-TA----G--ACA--TTATC--TAA--AGTTGT--TAATGC--T-C-AC-A--TTTCCA-T-AG-TT-A-CTTCA--C-AAA-TACTC-C---T---TAGCAACAACCA-AT-AT--TGTGAATATATCTATAATACG-TA--TAA---C-A-C-ATGTTATCAATGGA----A---TC-TGAAATACA-TGGGGG-AAAAACCCC-AGATACT-GGTG--ATCTTAA----AGTGGGGAA--AAATT-----GT
gi|3 : gGATTTG--AA-C-CGTGGGT---CTACTGCTT-GT---GAA-CC--T--G-AGC-A-C-GCTACC-TATTGCTC---------CA----------TC-A---CTT-C----AA---------T---------T------------A-------C---GTCAATTTCCGGA--AAT----TATAAAACAAAATGTCAAAgggttttttttaaatcgccctcaacaggatttgaaccgtgggtctactgcttgtgaacctgagcacgctacctattgctccatcacttcaattacgtcaatttccggaaattataaaacaaaatgtcaaat
gi|4 : gaggcatttatggccccctcttcaaacttactcattcctattcctgtagtagtgcacatgtgtataaaagaaaacaaaatatgtaatttactttgctatcttttaatattggttgcttagcaacgcatcaaacatatgaacaatcaaattattcatttacatagatatttcaaatgcaagacttaaaagtctaaaaacattttaactagaatgataatattttaaaacaaatgtcaattggcattatcctgcatatgatcaaaattcaaactttagacattatctaaagttgttaatgctcacatttccatagttacttcacaaatactccttagcaacaaccaatattgtgaatatatctataatacgtataacacatgttatcaatggaatctgaaatacatgggggaaaaaccccagatactggtgatcttaaagtggggaaaaattgtgggttttttttaaatcgccctcaacagAGGC-A-T-TAATGACCCC--TCTTAAAATTT--ACTCATTCC-TATT-CC--AGTAGTAGT-G-C-ACATGTGT-ATAAA-----A-------G-AAAA---A-ATA----TGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTT------CCTAGCAACGC-ATCAA-ACAT-AT-GAA-CAAT---A-ATTATT-CATTTGCAT-AAA-TAT-TTCAAATGCAA--G----ACTT-AAAA-GTCT--A---ATTTTTTT--AACT-TG-A-A-TGATAATA---------T-TTT---AT-AAGTTCCA-AATGCCA--TTC-TCTT-GCA-T-ATGAT-CAAAA--------TTCAG------AC--T-AA----G--ACA--TTATT--TAA--AGTAGTTATAATGC--T-C-AT-A--TTTCCA-A-AG-TT-A-CTGCA--C-AAA-TTCTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TT--TAT---T-G-C-ATGTTATCAA---ATC--A---TC-TGAAATGCA-T----G-AAAA---CC-ATTTGTT-GGTG--ATCT--A----AAT-GGGAAATAAATT-----GTATTAGA-ATAAAAAA-AAAAAAAAAAAAAAAAATT-T-GCC-----AAA-TC--CGTGAATTG--AA-C-C---GGTACCTT-CTTCAT-GC---GAG-TC--T--G-A-C-G-C-TCTACC-AA-CACGC---------CA----------CCTA---CTT-C----GC---------C---------T---------G--A-------T---GT----------A--AAC----TGT-AAAC-AAA-GTCAAAGTGTt
gi|5 : -AAAA---A-ATA----TGT-AA-TTTAC-T-TT-GCT-ATCTTTT--AATATTG-GTT--G---CCTACCAACGC-ATCAA-ACAT-AT-TTA-CAATCA-A--TTATT-CATTTACAT-AAA-TAT-TTCAAATGCAA--G----ACTTAAAAA-GTCT--A---A-TTTTTT--AACT-TG-A-A-TGATAATA---------T-TTT---AT-AAATTCCA-AATGGCA--TTA-TCTT-GCA-T-ATGAT-CAAAA--------TTCAA------ACAAT-AA----G--ACA--TTATT--T-A--AGTAGTTA-AATGC--T-C-AT-A--TTTCCA-T-AG-TT-A-CTGCA--C-AAA-TACTC-C---T---TAGCAACAACCA-AT-AT--TGTGACTATATCTATAATACG-TA--TAT---C-A-C-ATGTTATCAA---ATCA-A---TC-TGAAATGCA-T----GAAAAA---CC-ATATGCT-GGTG--ATCT--AAAAGAAAGGGGAAGTAAATT-----ATA--AGA-ATT----------TAAAAAAAAAAAATT-C-CGC-----AGATTT--CAGGACTTG--AA-C-CG--GGGACTCT-CAGCAT-GT---GAG-CC--T--G-C-C-GAC-ACTACT-TACTACGC---------CA----------CC-T---TTT-C----AT---------CTATAAATTAT---------G--A-------T---GT----------A--AAT----TAC-ATACAAAA-GTCAAA
gi|6 : AGGC-A-T-TTATGACCCAACTCTTTCAAATT--ACTC-CTCC-TATT-CT--ACTAGTGGT-GGC-ACATG------AAC-----A-------A-AATG---T-ACA----TGT-CA-TTTAC-T-TT-GCT-ATCTTT---GATAT-G-GTTTTG---CCCAGCAACGCGATGAA-ACAT-AT-GAAACAATTACA-ATTGTT-TATTTACAT-AAT-TTT-TTCAA-TG-AA--G----ACTT-AAAA-GTAT--ATATATTCTTTTTAAACT-AG-A-A-TGATACTA---------T-TTT---AT-AAATT-CA-AATGGCAATTTA-TCCT-GCA-T-ATGAT-CAAAATGTTTTTTTTTGGGAAAAAAA--T-AATCTTG--ACA--TTATTC-TAA--ATTGGT--TAATGT--T-C-AT-A--TTTCCA-T-AG-TC-A-TTGCA--TAAAA-TATTT-C---T---TAGCAACAACCA-AT-A---TGTGAA-ATATCTATAGTGCG-TA--TATAAAA-A-C-ATGTTATCAA---AAT--AAATTC-TGAAATAC-------G-AAAA---a
gi|7 : A-GTCA--A---ATTTTTT---AACTCTG-A-A-TGAT--CA---------T-TTT---AT-AAATTC-A-AATGCCA--TTC-TCTT-GCA-T-ATGAT-CAAAA--------TTCAG------AC--T-AA----GTTACA--TTATTTATAA--AGTAGTTATAATGC--T-C-AT-A---TTCCA-A-AGTTT-ACCTGCA--CAAAA-TACTC-C---T---TAGCAATAACCA-AT-ATTCTGTGACTATATCTATAATACGTTT--TAT---T-G-C-ATGTTATCAA---ATCG-A---TC-TGAAATGCA-T----G-AAAA---CC-ATTTTTT-GGTGTAATCTA-A----AATGGGGAAATAAATT-----------GC-ATTAGAAATAAAAAAAAAAAAAAAAATT-C-GCC-----ACA---------ATT-------------------------CAT-GC---GAG-TC--T--G-A-CTG-C-GCTACC-TATTACGC---------CAACACACGCACCT-A---CTT-C----GC---------C---------T---------G--A-------T---GTA---------A--AAC----TGT-AAACAAAT-GTCAAAGTGa
gi|8 : TTCG-TATT-CC--AGTATTAGTTG-C-ACGTGC-T-ATAAATAAAGA-------A-AAAA---A-ATA----TGTTAA-TTTACTT-TT-GAT-ATC-TTT--AATATT--GTT--G---CCTAGCAACGC-ATCAT-ACATAAT-GAA-CAATCA-A-ATTTTG-CATTTTCAT-AAA-TAT-TTCAAATGAAA--G----ACTG-AATG-GCCT--A---ATTTTTTA--AACT-AG-A-A-TGA-AAAA---------C-TTT---AT-
gi|8 : tAA--G----ACTG-AAAA-GTCT--A---ATTTTTTT--AAAT-AGAA-A-TGATAATACTTATCAACT-TTA---AT-TAATT-CA-ATTTGCA--TAT-TC-T-GCA-T-TTGAT-C-AAA--------TGCA-------AC--T-TA----T--ACATTTTATT--TA------------AATGC--T---AT-A--TTTTAA-T-AGTTT-A-CTTCACCC-AAA-TA-TC-CATTT---TGCCAACAACCA-AT-GT--cattactctaagactgaaaagtctaatttttttaaatagaaatgataatacttatcaactttaattaattcaatttgcatattctgcatttgatcaaatgcaacttatacattttatttaaatgctatattttaatagtttacttcacccaaatatccattttgccaacaaccaatgtg
gi|9 : tttcgtattccagtattagttgcacgtgctataaataaagaaaaaaaatatgttaatttacttttgatatctttaatattgttgcctagcaacgcatcatacataatgaacaatcaaattttgcattttcataaatatttcaaatgaaagactgaatggcctaattttttaaactagaatgaaaaactttatcattactctAGGC-AAT-TAATGGCCC---TCTTAACATTT--ACTCATTC---ATT-CC--AGTAG-AG--G-C-ACATGTGTTATAAA-----C-------G-AAAA---ACAT-----TGT-A--TTGAC-T-TT-GCT-ATCTTT---AAGATTG-GTT--GGCGCCTAGCA---C-ATCGACAAAA-AT-GAA-CAGATA-A-ATTATT-CATT-ACATTAAA-TAT-TCCAAATGCAA--G----ACTT-AAAA-GTCT--A---ATTTTTTA--AACT-TG-ATA-TG-TAATA-----------TTT---AT-AAATTCCA-AATGGCA--TTC-T-TT-GCA-T-ATGAT-C-AAA--------TTCAG------AC--T-AA----G--ACA--TT-CT--TAA----TAGAT-TAATGC--T-C-AT-A--TTTCCAGA-AG-TT-A-CTGCA--C-AAA-Tg