lowQualScore : 1 11 11 2222 111 222 111 2222222 1 1 11
lowQualScore : 5 2 88 2 2 2 2 6 666 2 2 5 2 2 2 5555 5 33 2 2 444 7777777 2 33 444 88888888 444 2 7 444 2 2 2 2 2 444 5 33 1 33 33 33 22 2 2 2 33 4 11 2 2 2 2 1 2 4444 2 33 2 2 2 777777 0000 4 2 88 2 777 2 666 2 2 666 8 000 33 2 77 5 55 2 1111111 444 2 66 1 2 2 2 2 2 2 6 5 4 2 555 2 3 2 3 44 0 3 33 3 3 3
lowQualScore : . . .. . . . . . ... . . . . . . .... . .. . . ... ....... . .. ... ........ ... . . ... . . . . . ... . .. . .. .. .. .. . . . .. . .. . . . . . . .... . .. . . . ...... .... . . .. . ... . ... . . ... . ... .. . .. . .. . ....... ... . .. . . . . . . . . . . . ... . . . . .. . . .. . . .
lowQualScore : 0 7 77 7 7 5 5 8 999 5 5 0 5 5 4 0000 1 22 4 4 111 6666666 4 22 111 55555555 111 5 5 444 5 4 4 4 4 111 4 11 1 11 11 11 77 2 2 2 11 4 99 4 4 4 5 2 5 6666 5 44 5 5 5 222222 3333 6 2 55 4 888 5 111 7 7 999 0 000 77 7 33 3 77 7 8888888 777 7 33 9 7 7 7 7 7 7 4 3 2 9 000 9 0 9 2 22 1 1 22 3 3 3
consensus : AGTCTATCCCAAA-AGCACCGGTC-CGT-C-GGT-CT-TAA---CAGGT-G-AAAATCAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTCC--GGATG---TCCG--------A---AGGTTG-C-G---TTG-GTTG-G-G-T-TTTAC---ATTTT--ATTTTCCAT--AT--TCC--ATCG-TTT-A-GA-CG--CTTT-ATC--TAA-TACCGA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAACGA--TTGTTGT-GAACTC-TATTT-CTGTC------AT---TTTTTTACCGCT-ACCAT-GATCA---GAA-TCAGT--CAGTAA-GAAGG-AG-A-AA-A---T--TAA-TTACA--AG-CGTG-CGAA-AAGGGATGTC----C---AAGAGGC-A--TCATTATGATCA-TT-ATAAATGA-T-AAAAG-T-TTCGGACTGGTGAAAATTCATTCGGTCCGGTGAAG-TAT---AG-AGAACT-GTCTGTCCAA--ATGT-CCT-GTGATGA-T-TTT-ATTTTT
Reference ( gi|9 ) : AGTCTATCTCAAA-AGCACCGGTC-TGT-C-GGT-CT-TTA---CAGGT-G-AGAATCAAT-TTGGA-CCG-AT----GCA--CT-T-GTCAG---TA-------AGA-TCGGTCC--GGATG---TCCG--------A---AGGTTG-C-G---TTG-GTTG-G-G-T-TTTAC---ATTTT--ATTTTCCAT--AT--TCC--ATCA-TTT-A-GA-CG--CTTT-ATC--TAA-TACCGA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAACGA--TTGTTGT-GAACTC-TATTT-CTGTC------A----TTTTTTACTGCT-ACTGT-GATCA---GAA-TCAGA--CAGTAA-GAAGG-AG-T-AA-A---T--TAA-TTACA--AG-CGTG-TGAA-AAGGGATCCC----C---AAGAGGC-A--TCATTATGATCA-TT-ATAAATGA-T-AAAAG-T-TTCGGACTGGTGAAAATTCATTTGGTCCGATGAAG-TAT---AG-ACAACT-GTCAGTCCAA--ATGT-CCG-GTGATGA-T-TTT-ATTTTT
gi|2 : AGTCTATCCCAAA-AGCATCGGTC-CGC-C-GGT-CT-TAA---CAGGT-G-AAAATCAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTCT--GGGTG---TCCA--------A---AGGTTG-C-G---TTG-GTTG-G-G-T-TTTAC---ATTTT--ATTTTCCAT--AT--TCC--ATCG-TTT-A-GA-TG--CTTT-ATCTATAA-TACCGA-GAT-A-CAGTCTTACAAA-CAT---TTT-TCTGATAACGA--TTGTTGT-GAACTC-TAGTT-CAGTC------A----TTTTTTACCGCT-ACTGT-GATCA---GAA-TCAGT--CAGTAA-AAAGG-AGAA-AA-A---TTATAA-TTACA--AG-CATG-CGAA-AAGGGATTCCAAGACTTGAAGAGTC-A--CCATTACGATCG-TT-ATAAATGA-T-AAAAG-T-TTCGGACTGGCGAAAATTCATTCGGTCCGGTGAAG-CAT---AG-AGAACT-GTCCGTCCAA--ATGT-CCT-GTGATGA-T-TTT-ATTTTT
gi|3 : cAGGCTATCCCAAA-AGCACCGGTC-CGT-C-GGT-CT-TAAA--CAGGTTG-AAAATTAAT-TTGGA-C-G-AT----GTA--CT-T-GTCAG---TA-------A-A-TCGGTTC--GGATG---TCCG--------A---AGGTTG-C-G---TTG-GTCG-G-G-T-TTTAC---A-TTT--ATTTTCAAT--AT--TCC--ATCG-TTT-A-GA-CG--CTTT-ATCT-TAA-TTATAA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAACGA--TTGTTGT-GAACTC-TATTT-CTGTC------AT---TTTTTTACCG-T-ACCAT-GATCA---GAA-TCAGA--CAGTAA-GAAGG-AG-TAAA-A---T--TAATTTACA--AGACGTG-CGAA-AAGGGATGTC----C---AAGAGGC-A--TCATTATGATCA-TT-ATAAATGATT-AAAAG-T-TTCAGACTAGTGAAAATTCA-TCGGTCCGGTGAAG-TAT---AG-AGAACT-GTCTGCCCAA--ATGTCCCGTGTGATGA-T-TTT-ATTTTTtcgcgaaga
gi|11 : AGTCTATCCCAAA-AGCACCGGTC-CGT-C-GGT-CT-TAA---CAGGT-G-AAAATCAAT-TTGGA-CAG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTCC--GGATG---TCCA--------A---AGGTTG-T-A---TTG-GTTG-G-G-T-TTTAC---A-TTT--ATTTTCCAT--AT--TCC--ATCG-TTT-A-GA-CG--CTTT--TC--TAA-TACCGA--AT-A-CAGTCTTACAAA-CG----TTT-TCTGATAACGA--TTATAGT-GAACTC-TATTT-CTATC------A----TTTTTTACCGCT-ACCAT-GATCA----AA-TCAGT--CAGTAA-GAAGG-AGAA-AA-A---T--TAA-TTACA--AG-CGTT-CGAA-------------------AAGAGGC-A--TCATTATGATCA-TT-ATAAATGA-TAAAAAG-T-TTTGGACTGGTGAAAATTCATTCGGTCCGGTGAAG-TAT---AG-AGAACT-GTCTGTCCAA--A--T-CCT-GTGATGA-T-TTT-ATTTTTttgcgcgaagac
gi|8 : cAGTCTATCCCAAA-AGCACCGGTC-CGT-C------T-TAA---CAGGT-G-AAATTCAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TTGGTGC--GGATG---TCCA--------A---AGGTTG-C-GATTTTACATTG-G-G-T-TTTAC---ATTTT--ATT-------------CC--ATCG-TTT-A-GA-CG--ATTT-ATC--TAA-TACCGA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAACGA--TTATAGT-GAACTC-TATTT-CTGTC------A----TTTTTTACCGCT-ACCAT-GATCA---GAA-TCAAT--CAGTAA-GAAGG-AGAA-AA-A---T--TAA-TTACA--AG-CGTT-CGAA-AAGGAATGTC----C---AAGAGGC-A--TCATTATGGTCA-TT-ATAAATGA-T-AAAAG-T-TTCGGACTGGTGAAAATTCATTCGGTCCGGTGAAG-TAT---AG-AGAACT-GTCTGTCCAGATATGT-CCT-GTGATGA-T-TTT-ATTTTTtcgcgaaga
gi|7 : cAGGCTATCCCAA---GCACCGGTC-CGT-C-GGT-CT-TAA---CAGGT-G-AAAATTAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTTC--GGATG---TCCG--------A---AGGTTG-CGG---TTG-GTCG-G-----TTTAC---A-TTT--ATTTTCAAT--AT--TCC--ATCG-TTT-A-GA-CG--CTTT-ATCT-TAA-TTATAA-GAT-A-CAGTCTTAC-AA-CG-----TT-TCTGATAACGA--TTGTTGT-GAACTC-TATTT-CTGTC------AT---TTTTTTACCGCT-ACCAT-GATCA---GAATTCAGA--CAGTAA-GAA-G-AG-TAAA-A---T--TAA-TTACA--AGACGTG-CGAA-AAGGGATGTC----C---AAGAGGC-AT-TCATTA-GATCA-TT-ATAAA-GA-T-AAAAG-TCTTCAGACTAGTGAAAATTCA-TCGGTCCGGTGAAGTTAT---AG-AGAACT-GTCTGCCCAA--A-GT-CCT-GTGATGA-T-TTT-ATTTTTtcgcgaaga
gi|6 : cAGGCTTTCCAAAA-AGCACCGGTC-CGT-C-GGT-CT-TAA---CAGGT-G-AAAATTAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTTC--GGATG---TCCG--------A---AGGTTG-CGG---TTG-GTC--G-G-T-TTTAC---A-TTT--ATTTTCAAT--AT--TCC--ATC--TTT-A-GA-CG--CTTTAATCT-TAA-TTATAA-GAT-ACCAGTCTTCC--A-CGT---TTT-TCTGAT-ACGA--TTGTTGT-GAACTC-TATTT-CTGTC------AT---TTTTTTACCGCT-ACCAT-GATCGAATGAA-TCAGA--CAGTAA-GAAGA-GG-T-AATA---T--TAA-TTAC---AG-CGTG-CGAA-AAGGGATGTC----C---AAGAGGC-A--TTAT--TGAT---TT-ATAAATGA-T-AAAAG-T-TTCAGACTAGTG-AAATTCA-TCGGTCCGGTGAAG-TAT---AG-AGAACT-GTCTGCCC-A--ATGT-CCT-GTGATGA-T-TTT-ATTTTTtcgcgaag
gi|4 : cAGTCTATCCCAAA-AGCACAGGTC-CGT-C-AGT-CT-TAA---CAGGT-G-AAAATCAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTCC--GGATG---TCCG--------A---AGGTTG-T-G---TTG-GTTG-G-G-T-TTTAC---ATTTA--ATTTTCCAT--AT--TCC--ATCG-TTT-A-GA-TG--CTTT-ATC--TAA-TACTAA-GAT-A-CAGTCTTACAAA-CCT---TTT-TCTGATAACGA--TTGTTGT-GAACTC-TATTT-CTGTC------AT---TTTTTTACCACT-ACCAT-GATCA---GAA-TCAGT--CAGTAA-GAAGG-AGAA-AA-A---T--TAA-TTACA--AG-CGTG-CGAA-AAGGGATGTC----C---AAGAGGC-A--TCATTATTATCA-TT-ATAANNNN-N-NNNNN-N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN---NN-NNNNNN-NNNNNNNNNN--NNNN-NNN-NNNNTGA-T-TTT-ATTTCTttcgcgaagact
gi|5 : agcAGGCTTTCCAAAA-AGCACCGGTC-CGT-C-GGT-CT-TAA---CAGGT-G-AAAATTAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTTC--GGATG---TCCG--------A---AGGTTG-CGG---TTG-GTCG-G-G-TGTTTAC---A-TTT--ATTTTCAAT--AT--TCC--ATCG-TTT-A-GA-CG--CTTTAATCT-TAA-TTATAA-GAT-A-CAGTCTT-CCAA-CGT---TTTGTCTGATCACGA--TTGTTGT-GAACTC-TATTT-CTGTC------AT---TTTTTTACCGCT-ACCAT-GATCGAT-GAA-TCAGA--CAGTAA-GAAGA-GG-T-AATA---T--TAA-TTACA--A--CGTG-CGAA-AAGGGATGTC----C----AGA-GC-AATTCATTA-GATCA-TT-ATAAATGA-T--AAAG-T-TTCAGACTAGTG-AAATTCA-TCGGTCCGGTGAAG-TAT---AG---AGCTCGTCTGC---A--ATGT-CCT-GTGATGA-TGTTT-ATTTTTtcgcaaagac
gi|15 : gcAGTCTATCTCAAA-AGCACTGGTT-CGT-C-TGT-CT-TAA---CAGGT-A-AAAATCAAT-TCGGA-CCG-AT----GTA--TA-T-GTCAG---TA-------AAA-TCGGTCC--AGATG---TCCG--------A---AGGTTG-C-G---TTG-GTTG-A-G-T-TTTAC---ATTTT--ATTTTCAAT--AT--GGA--ATCG-TTT-A-GA-CG--CTTT-ATC--TAA-TACCAA-GAT-A-CAGTCTTACGAA-TGT---TTT-ACTGATAACGA--TTATTGT-GAACTC-TATTT-CCGTC------A----TTTTATAC--CC-ACTttcgcggaagac
gi|20 : AGTCTATCCCAAA-AGCACCAGTC-CGT-C-GGT-CT-TAA---CAGGT-G-AAAATCAGT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AAA-TCGATCC--AGATG---TCTG--------A---AGGTTA-C-G---Tttttaccccgtaccgctaccaatga
gi|21 : acAGTCTATCCCAAA-AGCACCAGTC-CGT-C-G-T-CT-TAA---CAGGT-G-AAAATCAGT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AAA-TCGATCC--AGATG---TCTG--------A---AGGTT
gi|17 : acAGTCTATCCCAAA-GTCAC--GTCACGTTC-GGTTCT-TAA---CAGTT-G-TGA-TCAAT-CCATA-CCG--T----GCA--CTAT-GTAAAGTTTA-------GAA-TTGGTCCCAAGATGAGATTCGGTCACAAAA---AGGTTGAT-G---TTG-GTTG-G-G---TTTACAAAATTAT--ATTTC---T--AT--TCC--A-CG-TTTAA-GA-CA--CTCT-TTC--TAc
gi|10 : cGTCTATCCCAAA-ATCATCGGTC-CGT-C-GGT-CT-TAA---CAGGT-G-AAAATCAAT-TTGGA-CCG-AT----GTT--CT-T-GTCAG---TA-------AGA-TCGGTCC--GGATG---TCCG--------A---AGGTTG-T-G---TTG-GTTG-G-GTT-TTTGC---ATTTT--ATTTTCCAT--AT--ACC--ATC--TTT-T-GA-CA--CTTT-ATC--TAT-TACTG---------AGTCTGACAAA-CG---------------------TTGTTGT-GAACTC-TATTT-CTGTCTTCTTTT----TTTTTTACCACT-ACCAT-GATCA---GAA-TCAGT--CAGTAA-GAAGG-AG-A-AATA---T--TAA-TTACA--AG-CGTG-CGAA-AAGGGATGTC----C---AAGAGGC-A--TCATTATGATCA-TT-ATAAATGA-T-AAAAG-T-TTCAGACTGGTGAAAATTCATTCGGTTCGGTGAAG-CAT---AG-AGAACT-GTCTGTCCAA--ATGT-CCT-GTGATGA-T-TTT-TTTTTTtgatttaccgtattcctgccttcgcatttt
gi|12 : CTATCCCAAA-AGCAC-GGTC-C-T-C-G-T-CT-A-A---CAGCT-G-AAAATCAATATTGAATCCG-AT----GTAATCT-T-GT-AG---TATCTTTAAAGAATCGGTC----GGTG---TCAG--------A-----GTTG-C-G---TTG--TTGCGCG-T-TTTAC---ATTTT--ATTTCCAAT---C--TCC--AC---TTT-A-AT-CG--CTTT-ATC--TAA-TACCGA-GAT-A-CAATCTTATAAA-CGT---TTT-TCTGATAACGA--TTATAGT-GAATTC-TATTTTCTGTC------A----TTTTTTACCGCT-TTCAT--ATCA---GAA-TCAGT--CAGTAA-GAAGGGAG-A-AA-AG--T--TAA-TTACA--AG-CATT-CGAA-AAGGGATGTC----C---AAGAGGC-A--TCATTATGATCA-TT-ATAAATGA-T-AAAAG-T-TTCGGCCTGGTGAAAATTCATTCGGTTCAGTGAAA-TAT---AG-AGAACT-GTCttcgtgaagac
gi|1 : TATCCCAAATAGCACCGGTC-CGT-TTGGT-CCCTTAAACCAGGT-GTAAAAT-AAT-TGGAG-CCGCATAGGGGTA--CT-TTGTCAG---TA-------AAT-TCTGTCC--GGGTG---TCCA--------ATATAGGTTG-C-G---TT--------------TTAC---ATTTCTAATTTTCCATTAAT--TCC----CGGTTT-AAGA-CGGCTTTT-ATC--TAAATACCGATGATTA-CAGTCTTACAAAACGTAGTTTC-TCTGATAACGGATTTGTTGTTGAACTC-TATTT-TCGTT------A----TGTTT-ACTGTTTACCGTTGATCA---GAA-TCAAGTCCAGTAAAGAAGG-AG-A-AA-AAAAT--TTA-TTACA--AG-CTTT-CGAACAAAAGATGTC----C---AAGAGGCCA--TCATTATGATCAATT-ATAAATGA-T-AAAAGTT-TTTGGACTTNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN---NN-NNNNNN-NNNNNNNNNN--NNNN-NAT-GTGATGATT-TTT-ATTTTT
gi|16 : gtgct-CT-TAA---CAGGT-G-AAAATCAAT-TTGGA-CCA-AT----ATT--CT-T-GTCAG---TA-------AAA-TCGGTCC--GGATG---TCCG--------A---AGGTTG-T-G---TTG-GTTG-G-G-T-TTTAC---ATTTT--ATTTTCCAT--AT--TCCATATCA-TTT-C-GA-CG--CTTT-ATC--TAA-TACTGA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAACGA--TTGTTGT-GAACTC-TATTT-CTGTC------ATTTTTTTTTTACCGCT-ACCAT-GATCA---GAA-tcgcaaaga
gi|14 : G-GT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTCC--GGATA---TCCG--------G---AGGTTT-T-G---TTG-GTTG-G-G-T-TTTAC---ATTTT--ATTTTCCAT--AT--TCC--ATTG-TTT-A-GG-TG--CTTT-ATT--TAA-TATCGA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAGCGA--TTGTTGT-GAACTC-TATAT-CTGTC------A----TTTTTTACCGCT-ACCAT-GATCA---GAA-TCAGT--CAGTAT-GAAGG-AGAA-AA-A---T--TAA-TTACA--AG-CGTG-CGAA-CAGGGATGTC----C---AAGAGGC-A--TCATT---ATC--------AATGA-T-AAAAG-T-
gi|24 : TG-GTTG-G---T-TTTAC---ATTTT--ATTTTCCAT--AT--TCC--ATCG-TTT-A-GACCG--CTTT-ATC--TAA-TACCGA-GAT-
gi|13 : TG-G-G-T-TTTAT---ATTTT--ATTTTCCAC--AT--ACC--ATCA-TTT-C-GA-TG--CTTT-ATC--TAA-TACCGA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAACGA--TTGTTGT-GAATTC-TATTT-CTGTC------A----TTTTTTACTGCT-ACCAT-GATCA---GAA-TCAGT--CAGTAA-AAAGA-GA-A-AA-A---T--TAA-TTACA--AG-CGTGCT----AAGGTATGTC----T---AAGAGGC-A--TCATTATGATCA-TT-ATAAATGA-T-AAAAG-T-TTCGGACTGGTGAAAATTCATTCGGTTCGGTGAAT-TAT---AG-AGAACT-GTCTGTCCAA--ATGT-TCT-GTGATGA-T-TTTAATTTTT
gi|19 : TC--ATATTCCAT--ATACTCC---TC---TG-A-GA-CG--CTTT-A----------------GT---CAGTCGTACTCA-CGT---TTT-TCTCATAACGA--TTCTTGT-GAACTCTTATTT-CTGTC------AT---TTTTTTACCACT-ACCAT-GAcgcgaaga
gi|18 : ccTCTTTATTCCT-ACCAT-GATCA---G---TCAG------TAA-GAGTA-A----AA-A---T--TAA-TTACAGGAG-TGCG-TG-----------------C---AAGAGGC-A--TCATCAATATCA-TTAATAA
gi|22 : TTTATT-CT-ACCAT-GATCA---G---TCAG------TAA-G---G-AG-T-AA-AA--T--TAA-TTACAGGAG-TGCG-TG-----------------C---AAGAGGC-A--TCAATATGATTA----ATAAATGA-T-AAAAG-T-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcgtaaagact
gi|23 : cGA-T-AAAAG-T-TTCGGACTGGCGAAAATTCATTCGGTCCGGTGAAG-TAT---AG-AGAACT-
gi|15 : ACAGGTAAAAATCAATTCGGACCGATGTA--TATGTCAGTAAAA----TCGGTCCAG--ATGT-CCG-ttttattttttcgcgaagac
gi|25 : agtctatctcaaaagcactggttcgtctgtcttaGTCCAA--ATGT-CCT-GTGATGA-T-TTT-ATTTTTaaggttgcgttggttgagttttacattttattttcaatatggaatcgtttagacgctttatctaataccaagatacagtcttacgaatgttttactgataacgattattgtgaactctatttccgtcattttatacccactttttaccccgtaccgctaccaatga
Alignments
lowQualScore : 11 2
lowQualScore : 2 2 2 2 2 33 55 33 2 2 2 2 2 4444 33 2 2 333 7777777 2 33 333 88888888 333 2 7 444 2 2 2 2 2 333 4 22 0 22 22 22 22 2 2 2 22 4 11 2 2 2 2 0 2 444 2 33 2 2 2 55555 9999 88888888 888888888 2 2 2 777 2 2 2 2 2 2 2 666 33 2 5 44 99999999 2 55 1 2 2 2 2 2 2 6 2 2 44 0 44 3 3 3
lowQualScore : . . . . . .. .. .. . . . . . .... .. . . ... ....... . .. ... ........ ... . . ... . . . . . ... . .. . .. .. .. .. . . . .. . .. . . . . . . ... . .. . . . ..... .... ........ ......... . . . ... . . . . . . . ... .. . . .. ........ . .. . . . . . . . . . . .. . .. . . .
lowQualScore : 5 5 5 5 5 22 66 22 4 4 4 4 2 7777 11 2 2 999 2222222 2 11 999 11111111 999 4 1 111 4 2 2 2 2 999 6 99 5 99 99 99 55 1 1 1 99 2 33 2 2 2 4 6 4 111 4 22 4 4 4 99999 5555 11111111 999999999 1 1 1 444 4 5 5 5 5 5 5 999 44 5 0 11 11111111 5 99 2 5 5 5 5 5 5 4 9 9 22 1 22 1 1 1
consensus : AGTCTATCCCAAA-AGCACCGGTC-CG-TC-GG-TC--TTAA--CAG--GT-G-AAAATCAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTCC--GGATG---TCCG--------A---AGGTTG-C-G---TTG-GTTG-G-G-T-TTTAC---ATTTT--ATTTTCCAT--AT--TCC--ATCG-TTT-A-GA-CG--CTTT-ATC--TAA-TACCGA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAACGA--TTGTTGT-GAACTC-TATTT-CTGTC-----A---TTTT--------TT---------TACCGCT-ACC-AT-GATCA---GAA-TCA-GTC-AGTAA-GAAGG-AG-AAA-A---T--TAA-TTACAAG-CGTGCGAA-AAGGGATGTCC--------AAGAGG-CA--TCATTATGATC-ATT-ATAAATGA-T-AAAAG-T-TTCGGACTGGTGAAAATTCATTCGGTCCGGTGAAG-TATAGAGAACT-GTCTGTCCAA--ATGTCC--TGTGATGA-T-TTT-ATTTTT
Reference ( family-6122 ) : AGTCTATCCCAAA-AGCACCGGTC-CG-TC-GG-TC--TTAA--CAG--GT-G-AAAATCAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTCC--GGATG---TCCG--------A---AGGTTG-C-G---TTG-GTTG-G-G-T-TTTAC---ATTTT--ATTTTCCAT--AT--TCC--ATCG-TTT-A-GA-CG--CTTT-ATC--TAA-TACCGA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAACGA--TTGTTGT-GAACTC-TATTT-CTGTC-----A---TTTT--------TT---------TACCGCT-ACC-AT-GATCA---GAA-TCA-GTC-AGTAA-GAAGG-AG-AAA-A---T--TAA-TTACAAG-CGTGCGAA-AAGGGATGTCC--------AAGAGG-CA--TCATTATGATC-ATT-ATAAATGA-T-AAAAG-T-TTCGGACTGGTGAAAATTCATTCGGTCCGGTGAAG-TATAGAGAACT-GTCTGTCCAA--ATGTCC--TGTGATGA-T-TTT-ATTTTT
gi|1 : TATCCCAAATAGCACCGGTC-CG-TTTGG-TCCCTTAAACCAG--GT-GTAAAAT-AAT-TGGAG-CCGCATAGGGGTA--CT-TTGTCAG---TA-------AAT-TCTGTCC--GGGTG---TCCA--------ATATAGGTTG-C-G---TT--------------TTAC---ATTTCTAATTTTCCATTAAT--TCC----CGGTTT-AAGA-CGGCTTTT-ATC--TAAATACCGATGATTA-CAGTCTTACAAAACGTAGTTTC-TCTGATAACGGATTTGTTGTTGAACTC-TATTT-TCGTT-----A---TGTT--------T-----------ACTGTTTACC-GTTGATCA---GAA-TCAAGTCCAGTAAAGAAGG-AG-AAA-AAAAT--TTA-TTACAAG-CTTTCGAACAAAAGATGTCC--------AAGAGGCCA--TCATTATGATCAATT-ATAAATGA-T-AAAAGTT-TTTGGACTTNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNN-NNNNNNNNNN--NNNNNA--TGTGATGATT-TTT-ATTTTT
gi|10 : gtgctGTCTATCCCAAA-ATCATCGGTC-CG-TC-GG-TC--TTAA--CAG--GT-G-AAAATCAAT-TTGGA-CCG-AT----GTT--CT-T-GTCAG---TA-------AGA-TCGGTCC--GGATG---TCCG--------A---AGGTTG-T-G---TTG-GTTG-G-GTT-TTTGC---ATTTT--ATTTTCCAT--AT--ACC--ATCT-TTT---GA-CA--CTTT-ATC--TAT-TACTG---------AGTCTGACAAA-CG---------------------TTGTTGT-GAACTC-TATTT-CTGTCTTCTTT---TTTT--------TT---------TACCACT-ACC-AT-GATCA---GAA-TCA-GTC-AGTAA-GAAGG-AG-AAATA---T--TAA-TTACAAG-CGTGCGAA-AAGGGATGTCC--------AAGAGG-CA--TCATTATGATC-ATT-ATAAATGA-T-AAAAG-T-TTCAGACTGGTGAAAATTCATTCGGTTCGGTGAAG-CATAGAGAACT-GTCTGTCCAA--ATGTCC--TGTGATGA-T-TTT-TTTTTTtcgcaaaga
gi|11 : AGTCTATCCCAAA-AGCACCGGTC-CG-TC-GG-TC--TTAA--CAG--GT-G-AAAATCAAT-TTGGA-CAG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTCC--GGATG---TCCA--------A---AGGTTG-T-A---TTG-GTTG-G-G-T-TTTAC---A-TTT--ATTTTCCAT--AT--TCC--ATCG-TTT-A-GA-CG--CTTT--TC--TAA-TACCGA--AT-A-CAGTCTTACAAA-CG----TTT-TCTGATAACGA--TTATAGT-GAACTC-TATTT-CTATC-----A----TTT--------TT---------TACCGCT-ACC-AT-GATCA----AA-TCA-GTC-AGTAA-GAAGG-AGAAAA-A---T--TAA-TTACAAG-CGTTCGAA--------------------AAGAGG-CA--TCATTATGATC-ATT-ATAAATGA-TAAAAAG-T-TTTGGACTGGTGAAAATTCATTCGGTCCGGTGAAG-TATAGAGAACT-GTCTGTCCAA--A--TCC--TGTGATGA-T-TTT-ATTTTTttcgtgaagac
gi|12 : cCTATCCCAAA-AGCAC-GGTC-C--TC-G--TC--T-AA--CAG--CT-G-AAAATCAATATTGAATCCG-AT----GTAATCT-T-GT-AG---TATCTTTAAAGAATCGGTC----GGTG---TCAG--------A-----GTTG-C-G---TTG--TTGCGCG-T-TTTAC---ATTTT--ATTTCCAAT---C--TCC--AC---TTT-A-AT-CG--CTTT-ATC--TAA-TACCGA-GAT-A-CAATCTTATAAA-CGT---TTT-TCTGATAACGA--TTATAGT-GAATTC-TATTTTCTGTC-----A---TTTT--------TT----------ACCGCT-TTC-AT--ATCA---GAA-TCA-GTC-AGTAA-GAAGGGAG-AAA-AG--T--TAA-TTACAAG-CATTCGAA-AAGGGATGTCC--------AAGAGG-CA--TCATTATGATC-ATT-ATAAATGA-T-AAAAG-T-TTCGGCCTGGTGAAAATTCATTCGGTTCAGTGAAA-TATAGAGAACT-GTCtcgcgaaga
gi|13 : TG-G-G-T-TTTAT---ATTTT--ATTTTCCAC--AT--ACC--ATCA-TTT-C-GA-TG--CTTT-ATC--TAA-TACCGA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAACGA--TTGTTGT-GAATTC-TATTT-CTGTC-----A---TTTT--------TT----------ACTGCT-ACC-AT-GATCA---GAA-TCA-GTC-AGTAA-AAAGA-GA-AAA-A---T--TAA-TTACAAG-CGTGCTAA---GGTATGTCT--------AAGAGG-CA--TCATTATGATC-ATT-ATAAATGA-T-AAAAG-T-TTCGGACTGGTGAAAATTCATTCGGTTCGGTGAAT-TATAGAGAACT-GTCTGTCCAA--ATGTTC--TGTGATGA-T-TTTAATTTTT
gi|14 : G-GT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTCC--GGATA---TCCG--------G---AGGTTT-T-G---TTG-GTTG-G-G-T-TTTAC---ATTTT--ATTTTCCAT--AT--TCC--ATTG-TTT-A-GG-TG--CTTT-ATT--TAA-TATCGA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAGCGA--TTGTTGT-GAACTC-TATAT-CTGTC-----A----TTT--------TT---------TACCGCT-ACC-AT-GATCA---GAA-TCA-GTC-AGTAT-GAAGG-AGAAAA-A---T--TAA-TTACAAG-CGTGCGAA-CAGGGATGTCC--------AAGAGG-CA--TCATT---ATC--------AATGA-T-AAAAG-T-cgcgaaga
gi|15 : AGTCTATCTCAAA-AGCACTGGTT-CG-TC-TG-TC--TTAA--CAG--GT-A-AAAATCAAT-TCGGA-CCG-AT----GTA--TA-T-GTCAG---TA-------AAA-TCGGTCC--AGATG---TCCG--------A---AGGTTG-C-G---TTG-GTTG-A-G-T-TTTAC---ATTTT--ATTTTCAAT--AT--GGA--ATCG-TTT-A-GA-CG--CTTT-ATC--TAA-TACCAA-GAT-A-CAGTCTTACGAA-TGT---TTT-ACTGATAACGA--TTATTGT-GAACTC-TATTT-CCGTC-----A---TTTTATACCCACTTTTTACCCCGTACCGCT-ACCAAT-GA
gi|16 : C--TTAA--CAG--GT-G-AAAATCAAT-TTGGA-CCA-AT----ATT--CT-T-GTCAG---TA-------AAA-TCGGTCC--GGATG---TCCG--------A---AGGTTG-T-G---TTG-GTTG-G-G-T-TTTAC---ATTTT--ATTTTCCAT--AT--TCCATATCA-TTT-C-GA-CG--CTTT-ATC--TAA-TACTGA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAACGA--TTGTTGT-GAACTC-TATTT-CTGTC-----ATTTTTTT--------TT---------TACCGCT-ACC-AT-GATCA---GAA-
gi|17 : AGTCTATCCCAAA-GTCAC--GTCACGTTC-GGTTC--TTAA--CAGTTGT-G----ATCAAT-CCATA-CCG--T----GCA--CTAT-GTAAAGTTTA-------GAA-TTGGTCCCAAGATGAGATTCGGTCACAAAA---AGGTTGAT-G---TTG-GTTG-G-G---TTTACAAAATTAT--ATTTC---T--AT--TCC--A-CG-TTTAA-GA-CA--CTCT-TTC--TA
gi|18 : cTC--------TT---------TATTCCT-ACC-AT-GATCA---G--------TC-AGTAA-GA--G-TA-AAA-A---T--TAA-TTACAGG-AGTGCG---------TG--C--------AAGAGG-CA--TCATCAATATC-ATTAATAAtgatttaccgtattcctgccttcgcatttt
gi|19 : TC--ATATTCCAT--ATACTCC---TC---TG-A-GA-CG--CTTT-A----------------GT---CAGTCGTACTCA-CGT---TTT-TCTCATAACGA--TTCTTGT-GAACTCTTATTT-CTGTC-----A---TTTT--------TT---------TACCACT-ACC-AT-GAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcgtaaagact
gi|2 : ccAGTCTATCCCAAA-AGCATCGGTC-CG-CC-GG-TC--TTAA--CAG--GT-G-AAAATCAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTCT--GGGTG---TCCA--------A---AGGTTG-C-G---TTG-GTTG-G-G-T-TTTAC---ATTTT--ATTTTCCAT--AT--TCC--ATCG-TTT-A-GA-TG--CTTT-ATCTATAA-TACCGA-GAT-A-CAGTCTTACAAA-CAT---TTT-TCTGATAACGA--TTGTTGT-GAACTC-TAGTT-CAGTC-----A----TTT--------TT---------TACCGCT-ACT-GT-GATCA---GAA-TCA-GTC-AGTAA-AAAGG-AGAAAA-A---TTATAA-TTACAAG-CATGCGAA-AAGGGAT-TCCAAGACTTGAAGAGT-CA--CCATTACGATC-GTT-ATAAATGA-T-AAAAG-T-TTCGGACTGGCGAAAATTCATTCGGTCCGGTGAAG-CATAGAGAACT-GTCCGTCCAA--ATGTCC--TGTGATGA-T-TTT-ATTTTT
gi|20 : cAGTCTATCCCAAA-AGCACCAGTC-CG-TC-GG-TC--TTAA--CAG--GT-G-AAAATCAGT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AAA-TCGATCC--AGATG---TCTG--------A---AGGTTA-C-G---Ttcgcgaaga
gi|21 : acAGTCTATCCCAAA-AGCACCAGTC-CG-TC-G--TC--TTAA--CAG--GT-G-AAAATCAGT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AAA-TCGATCC--AGATG---TCTG--------A---AGGTT
gi|22 : acCT-ACC-AT-GATCA---G--------TC-AGTAA-G---G-AGTAAA-A---T--TAA-TTACAGG-AGTGCG---------TG--C--------AAGAGG-CA--TCAATATGATT-A---ATAAATGA-T-AAAAG-T-c
gi|23 : ctttattGA-T-AAAAG-T-TTCGGACTGGCGAAAATTCATTCGGTCCGGTGAAG-TATAGAGAACT-
gi|24 : TG-GTTG-G---T-TTTAC---ATTTT--ATTTTCCAT--AT--TCC--ATCG-TTT-A-GACCG--CTTT-ATC--TAA-TACCGA-GAT-ttttattttttcgcgaagac
gi|25 : TGTCCAA--ATGTCC--TGTGATGA-T-TTT-ATTTTT
gi|3 : anaacaacaAGGCTATCCCAAA-AGCACCGGTC-CG-TC-GG-TC--TTAAA-CAG--GTTG-AAAATTAAT-TTGGA-C-G-AT----GTA--CT-T-GTCAG---TA-------A-A-TCGGTTC--GGATG---TCCG--------A---AGGTTG-C-G---TTG-GTCG-G-G-T-TTTAC---A-TTT--ATTTTCAAT--AT--TCC--ATCG-TTT-A-GA-CG--CTTT-ATCT-TAA-TTATAA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAACGA--TTGTTGT-GAACTC-TATTT-CTGTC-----A---TTTT--------TT---------TACCG-T-ACC-AT-GATCA---GAA-TCA-GAC-AGTAA-GAAGG-AGTAAA-A---T--TAATTTACAAGACGTGCGAA-AAGGGATGTCC--------AAGAGG-CA--TCATTATGATC-ATT-ATAAATGATT-AAAAG-T-TTCAGACTAGTGAAAATTCA-TCGGTCCGGTGAAG-TATAGAGAACT-GTCTGCCCAA--ATGTCCCGTGTGATGA-T-TTT-ATTTTTacgcgaaggc
gi|4 : AGTCTATCCCAAA-AGCACAGGTC-CG-TC-AG-TC--TTAA--CAG--GT-G-AAAATCAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTCC--GGATG---TCCG--------A---AGGTTG-T-G---TTG-GTTG-G-G-T-TTTAC---ATTTA--ATTTTCCAT--AT--TCC--ATCG-TTT-A-GA-TG--CTTT-ATC--TAA-TACTAA-GAT-A-CAGTCTTACAAA-CCT---TTT-TCTGATAACGA--TTGTTGT-GAACTC-TATTT-CTGTC-----A---TTTT--------TT---------TACCACT-ACC-AT-GATCA---GAA-TCA-GTC-AGTAA-GAAGG-AGAAAA-A---T--TAA-TTACAAG-CGTGCGAA-AAGGGATGTCC--------AAGAGG-CA--TCATTATTATC-ATT-ATAANNNN-N-NNNNN-N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNN-NNNNNNNNNN--NNNNNN--NNNNNTGA-T-TTT-ATTTCTttgcgcgaagac
gi|5 : agcAGGCTTTCCAAAA-AGCACCGGTC-CG-TC-GG-TC--TTAA--CAG--GT-G-AAAATTAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTTC--GGATG---TCCG--------A---AGGTTG-CGG---TTG-GTCG-G-G-TGTTTAC---A-TTT--ATTTTCAAT--AT--TCC--ATCG-TTT-A-GA-CG--CTTTAATCT-TAA-TTATAA-GAT-A-CAGTCTT-CCAA-CGT---TTTGTCTGATCACGA--TTGTTGT-GAACTC-TATTT-CTGTC-----A---TTTT--------TT---------TACCGCT-ACC-AT-GATCGAT-GAA-TCA-GAC-AGTAA-GAAGA-GGTAAT-A---T--TAA-TTACAA--CGTGCGAA-AAGGGATGTCC---------AGA-G-CAATTCATTA-GATC-ATT-ATAAATGA-T--AAAG-T-TTCAGACTAGTG-AAATTCA-TCGGTCCGGTGAAG-TATAGAG--CTCGTCTGC---A--ATGTCC--TGTGATGA-TGTTT-ATTTTTtcgcaaagac
gi|6 : gcAGGCTTTCCAAAA-AGCACCGGTC-CG-TC-GG-TC--TTAA--CAG--GT-G-AAAATTAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTTC--GGATG---TCCG--------A---AGGTTG-CGG---TTG-GTC--G-G-T-TTTAC---A-TTT--ATTTTCAAT--AT--TCC--ATC--TTT-A-GA-CG--CTTTAATCT-TAA-TTATAA-GAT-ACCAGTCTTCC--A-CGT---TTT-TCTGAT-ACGA--TTGTTGT-GAACTC-TATTT-CTGTC-----A---TTTT--------TT---------TACCGCT-ACC-AT-GATCGAATGAA-TCA-GAC-AGTAA-GAAGA-GGTAAT-A---T--TAA-TTAC-AG-CGTGCGAA-AAGGGATGTCC--------AAGAGG-CA--TTAT--TGAT---TT-ATAAATGA-T-AAAAG-T-TTCAGACTAGTG-AAATTCA-TCGGTCCGGTGAAG-TATAGAGAACT-GTCTGCCC-A--ATGTCC--TGTGATGA-T-TTT-ATTTTTttcgcggaagac
gi|7 : cAGGCTATCCCAA---GCACCGGTC-CG-TC-GG-TC--TTAA--CAG--GT-G-AAAATTAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTTC--GGATG---TCCG--------A---AGGTTG-CGG---TTG-GTCG-G-----TTTAC---A-TTT--ATTTTCAAT--AT--TCC--ATCG-TTT-A-GA-CG--CTTT-ATCT-TAA-TTATAA-GAT-A-CAGTCTTAC-AA-CG-----TT-TCTGATAACGA--TTGTTGT-GAACTC-TATTT-CTGTC-----A---TTTT--------TT---------TACCGCT-ACC-AT-GATCA---GAATTCA-GAC-AGTAA-GAAGA-GT-AAA-A---T--TAA-TTACAAGACGTGCGAA-AAGGGATGTCC--------AAGAGG-CAT-TCATTA-GATC-ATT-ATAAA-GA-T-AAAAG-TCTTCAGACTAGTGAAAATTCA-TCGGTCCGGTGAAGTTATAGAGAACT-GTCTGCCCAA--A-GTCC--TGTGATGA-T-TTT-ATTTTTttcgcgaagact
gi|8 : cAGTCTATCCCAAA-AGCACCGGTC-CG-TC--------TTAA--CAG--GT-G-AAATTCAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TTGGTGC--GGATG---TCCA--------A---AGGTTG-C-GATTTTACATTG-G-G-T-TTTAC---ATTTT--ATT-------------CC--ATCG-TTT-A-GA-CG--ATTT-ATC--TAA-TACCGA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAACGA--TTATAGT-GAACTC-TATTT-CTGTC-----A----TTT--------TT---------TACCGCT-ACC-AT-GATCA---GAA-TCA-ATC-AGTAA-GAAGG-AGAAAA-A---T--TAA-TTACAAG-CGTTCGAA-AAGGAATGTCC--------AAGAGG-CA--TCATTATGGTC-ATT-ATAAATGA-T-AAAAG-T-TTCGGACTGGTGAAAATTCATTCGGTCCGGTGAAG-TATAGAGAACT-GTCTGTCCAGATATGTCC--TGTGATGA-T-TTT-ATTTTTtcgcgaag
gi|9 : cAGTCTATCTCAAA-AGCACCGGTC-TG-TC-GG-TC--TTTA--CAG--GT-G-AGAATCAAT-TTGGA-CCG-AT----GCA--CT-T-GTCAG---TA-------AGA-TCGGTCC--GGATG---TCCG--------A---AGGTTG-C-G---TTG-GTTG-G-G-T-TTTAC---ATTTT--ATTTTCCAT--AT--TCC--ATCA-TTT-A-GA-CG--CTTT-ATC--TAA-TACCGA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAACGA--TTGTTGT-GAACTC-TATTT-CTGTC-----A----TTT--------TT---------TACTGCT-ACT-GT-GATCA---GAA-TCA-GAC-AGTAA-GAAGG-AG-TAA-A---T--TAA-TTACAAG-CGTGTGAA-AAGGGATCCCC--------AAGAGG-CA--TCATTATGATC-ATT-ATAAATGA-T-AAAAG-T-TTCGGACTGGTGAAAATTCATTTGGTCCGATGAAG-TATAGACAACT-GTCAGTCCAA--ATGTCC--GGTGATGA-T-TTT-ATTTTTtcgcgaaga
Alignments
lowQualScore : 11 2
lowQualScore : 2 2 2 2 2 33 55 33 2 2 2 2 2 4444 33 2 2 333 7777777 2 33 333 88888888 333 2 7 444 2 2 2 2 2 333 4 22 0 22 22 22 22 2 2 2 22 4 11 2 2 2 2 0 2 444 2 33 2 2 2 55555 9999 88888888 888888888 2 2 2 777 2 2 2 2 2 2 2 666 33 2 5 44 99999999 2 55 1 2 2 2 2 2 2 6 2 2 44 0 44 3 3 3
lowQualScore : . . . . . .. .. .. . . . . . .... .. . . ... ....... . .. ... ........ ... . . ... . . . . . ... . .. . .. .. .. .. . . . .. . .. . . . . . . ... . .. . . . ..... .... ........ ......... . . . ... . . . . . . . ... .. . . .. ........ . .. . . . . . . . . . . .. . .. . . .
lowQualScore : 5 5 5 5 5 22 66 22 4 4 4 4 2 7777 11 2 2 999 2222222 2 11 999 11111111 999 4 1 111 4 2 2 2 2 999 6 99 5 99 99 99 55 1 1 1 99 2 33 2 2 2 4 6 4 111 4 22 4 4 4 99999 5555 11111111 999999999 1 1 1 444 4 5 5 5 5 5 5 999 44 5 0 11 11111111 5 99 2 5 5 5 5 5 5 4 9 9 22 1 22 1 1 1
consensus : AGTCTATCCCAAA-AGCACCGGTC-CG-TC-GG-TC--TTAA--CAG--GT-G-AAAATCAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTCC--GGATG---TCCG--------A---AGGTTG-C-G---TTG-GTTG-G-G-T-TTTAC---ATTTT--ATTTTCCAT--AT--TCC--ATCG-TTT-A-GA-CG--CTTT-ATC--TAA-TACCGA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAACGA--TTGTTGT-GAACTC-TATTT-CTGTC-----A---TTTT--------TT---------TACCGCT-ACC-AT-GATCA---GAA-TCA-GTC-AGTAA-GAAGG-AG-AAA-A---T--TAA-TTACAAG-CGTGCGAA-AAGGGATGTCC--------AAGAGG-CA--TCATTATGATC-ATT-ATAAATGA-T-AAAAG-T-TTCGGACTGGTGAAAATTCATTCGGTCCGGTGAAG-TATAGAGAACT-GTCTGTCCAA--ATGTCC--TGTGATGA-T-TTT-ATTTTT
Reference ( family-6122 ) : AGTCTATCCCAAA-AGCACCGGTC-CG-TC-GG-TC--TTAA--CAG--GT-G-AAAATCAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTCC--GGATG---TCCG--------A---AGGTTG-C-G---TTG-GTTG-G-G-T-TTTAC---ATTTT--ATTTTCCAT--AT--TCC--ATCG-TTT-A-GA-CG--CTTT-ATC--TAA-TACCGA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAACGA--TTGTTGT-GAACTC-TATTT-CTGTC-----A---TTTT--------TT---------TACCGCT-ACC-AT-GATCA---GAA-TCA-GTC-AGTAA-GAAGG-AG-AAA-A---T--TAA-TTACAAG-CGTGCGAA-AAGGGATGTCC--------AAGAGG-CA--TCATTATGATC-ATT-ATAAATGA-T-AAAAG-T-TTCGGACTGGTGAAAATTCATTCGGTCCGGTGAAG-TATAGAGAACT-GTCTGTCCAA--ATGTCC--TGTGATGA-T-TTT-ATTTTT
gi|1 : TATCCCAAATAGCACCGGTC-CG-TTTGG-TCCCTTAAACCAG--GT-GTAAAAT-AAT-TGGAG-CCGCATAGGGGTA--CT-TTGTCAG---TA-------AAT-TCTGTCC--GGGTG---TCCA--------ATATAGGTTG-C-G---TT--------------TTAC---ATTTCTAATTTTCCATTAAT--TCC----CGGTTT-AAGA-CGGCTTTT-ATC--TAAATACCGATGATTA-CAGTCTTACAAAACGTAGTTTC-TCTGATAACGGATTTGTTGTTGAACTC-TATTT-TCGTT-----A---TGTT--------T-----------ACTGTTTACC-GTTGATCA---GAA-TCAAGTCCAGTAAAGAAGG-AG-AAA-AAAAT--TTA-TTACAAG-CTTTCGAACAAAAGATGTCC--------AAGAGGCCA--TCATTATGATCAATT-ATAAATGA-T-AAAAGTT-TTTGGACTTNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNN-NNNNNNNNNN--NNNNNA--TGTGATGATT-TTT-ATTTTT
gi|10 : gtgctGTCTATCCCAAA-ATCATCGGTC-CG-TC-GG-TC--TTAA--CAG--GT-G-AAAATCAAT-TTGGA-CCG-AT----GTT--CT-T-GTCAG---TA-------AGA-TCGGTCC--GGATG---TCCG--------A---AGGTTG-T-G---TTG-GTTG-G-GTT-TTTGC---ATTTT--ATTTTCCAT--AT--ACC--ATCT-TTT---GA-CA--CTTT-ATC--TAT-TACTG---------AGTCTGACAAA-CG---------------------TTGTTGT-GAACTC-TATTT-CTGTCTTCTTT---TTTT--------TT---------TACCACT-ACC-AT-GATCA---GAA-TCA-GTC-AGTAA-GAAGG-AG-AAATA---T--TAA-TTACAAG-CGTGCGAA-AAGGGATGTCC--------AAGAGG-CA--TCATTATGATC-ATT-ATAAATGA-T-AAAAG-T-TTCAGACTGGTGAAAATTCATTCGGTTCGGTGAAG-CATAGAGAACT-GTCTGTCCAA--ATGTCC--TGTGATGA-T-TTT-TTTTTTtcgcaaaga
gi|11 : AGTCTATCCCAAA-AGCACCGGTC-CG-TC-GG-TC--TTAA--CAG--GT-G-AAAATCAAT-TTGGA-CAG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTCC--GGATG---TCCA--------A---AGGTTG-T-A---TTG-GTTG-G-G-T-TTTAC---A-TTT--ATTTTCCAT--AT--TCC--ATCG-TTT-A-GA-CG--CTTT--TC--TAA-TACCGA--AT-A-CAGTCTTACAAA-CG----TTT-TCTGATAACGA--TTATAGT-GAACTC-TATTT-CTATC-----A----TTT--------TT---------TACCGCT-ACC-AT-GATCA----AA-TCA-GTC-AGTAA-GAAGG-AGAAAA-A---T--TAA-TTACAAG-CGTTCGAA--------------------AAGAGG-CA--TCATTATGATC-ATT-ATAAATGA-TAAAAAG-T-TTTGGACTGGTGAAAATTCATTCGGTCCGGTGAAG-TATAGAGAACT-GTCTGTCCAA--A--TCC--TGTGATGA-T-TTT-ATTTTTttcgtgaagac
gi|12 : cCTATCCCAAA-AGCAC-GGTC-C--TC-G--TC--T-AA--CAG--CT-G-AAAATCAATATTGAATCCG-AT----GTAATCT-T-GT-AG---TATCTTTAAAGAATCGGTC----GGTG---TCAG--------A-----GTTG-C-G---TTG--TTGCGCG-T-TTTAC---ATTTT--ATTTCCAAT---C--TCC--AC---TTT-A-AT-CG--CTTT-ATC--TAA-TACCGA-GAT-A-CAATCTTATAAA-CGT---TTT-TCTGATAACGA--TTATAGT-GAATTC-TATTTTCTGTC-----A---TTTT--------TT----------ACCGCT-TTC-AT--ATCA---GAA-TCA-GTC-AGTAA-GAAGGGAG-AAA-AG--T--TAA-TTACAAG-CATTCGAA-AAGGGATGTCC--------AAGAGG-CA--TCATTATGATC-ATT-ATAAATGA-T-AAAAG-T-TTCGGCCTGGTGAAAATTCATTCGGTTCAGTGAAA-TATAGAGAACT-GTCtcgcgaaga
gi|13 : TG-G-G-T-TTTAT---ATTTT--ATTTTCCAC--AT--ACC--ATCA-TTT-C-GA-TG--CTTT-ATC--TAA-TACCGA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAACGA--TTGTTGT-GAATTC-TATTT-CTGTC-----A---TTTT--------TT----------ACTGCT-ACC-AT-GATCA---GAA-TCA-GTC-AGTAA-AAAGA-GA-AAA-A---T--TAA-TTACAAG-CGTGCTAA---GGTATGTCT--------AAGAGG-CA--TCATTATGATC-ATT-ATAAATGA-T-AAAAG-T-TTCGGACTGGTGAAAATTCATTCGGTTCGGTGAAT-TATAGAGAACT-GTCTGTCCAA--ATGTTC--TGTGATGA-T-TTTAATTTTT
gi|14 : G-GT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTCC--GGATA---TCCG--------G---AGGTTT-T-G---TTG-GTTG-G-G-T-TTTAC---ATTTT--ATTTTCCAT--AT--TCC--ATTG-TTT-A-GG-TG--CTTT-ATT--TAA-TATCGA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAGCGA--TTGTTGT-GAACTC-TATAT-CTGTC-----A----TTT--------TT---------TACCGCT-ACC-AT-GATCA---GAA-TCA-GTC-AGTAT-GAAGG-AGAAAA-A---T--TAA-TTACAAG-CGTGCGAA-CAGGGATGTCC--------AAGAGG-CA--TCATT---ATC--------AATGA-T-AAAAG-T-cgcgaaga
gi|15 : AGTCTATCTCAAA-AGCACTGGTT-CG-TC-TG-TC--TTAA--CAG--GT-A-AAAATCAAT-TCGGA-CCG-AT----GTA--TA-T-GTCAG---TA-------AAA-TCGGTCC--AGATG---TCCG--------A---AGGTTG-C-G---TTG-GTTG-A-G-T-TTTAC---ATTTT--ATTTTCAAT--AT--GGA--ATCG-TTT-A-GA-CG--CTTT-ATC--TAA-TACCAA-GAT-A-CAGTCTTACGAA-TGT---TTT-ACTGATAACGA--TTATTGT-GAACTC-TATTT-CCGTC-----A---TTTTATACCCACTTTTTACCCCGTACCGCT-ACCAAT-GA
gi|16 : C--TTAA--CAG--GT-G-AAAATCAAT-TTGGA-CCA-AT----ATT--CT-T-GTCAG---TA-------AAA-TCGGTCC--GGATG---TCCG--------A---AGGTTG-T-G---TTG-GTTG-G-G-T-TTTAC---ATTTT--ATTTTCCAT--AT--TCCATATCA-TTT-C-GA-CG--CTTT-ATC--TAA-TACTGA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAACGA--TTGTTGT-GAACTC-TATTT-CTGTC-----ATTTTTTT--------TT---------TACCGCT-ACC-AT-GATCA---GAA-
gi|17 : AGTCTATCCCAAA-GTCAC--GTCACGTTC-GGTTC--TTAA--CAGTTGT-G----ATCAAT-CCATA-CCG--T----GCA--CTAT-GTAAAGTTTA-------GAA-TTGGTCCCAAGATGAGATTCGGTCACAAAA---AGGTTGAT-G---TTG-GTTG-G-G---TTTACAAAATTAT--ATTTC---T--AT--TCC--A-CG-TTTAA-GA-CA--CTCT-TTC--TA
gi|18 : cTC--------TT---------TATTCCT-ACC-AT-GATCA---G--------TC-AGTAA-GA--G-TA-AAA-A---T--TAA-TTACAGG-AGTGCG---------TG--C--------AAGAGG-CA--TCATCAATATC-ATTAATAAtgatttaccgtattcctgccttcgcatttt
gi|19 : TC--ATATTCCAT--ATACTCC---TC---TG-A-GA-CG--CTTT-A----------------GT---CAGTCGTACTCA-CGT---TTT-TCTCATAACGA--TTCTTGT-GAACTCTTATTT-CTGTC-----A---TTTT--------TT---------TACCACT-ACC-AT-GAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcgtaaagact
gi|2 : ccAGTCTATCCCAAA-AGCATCGGTC-CG-CC-GG-TC--TTAA--CAG--GT-G-AAAATCAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTCT--GGGTG---TCCA--------A---AGGTTG-C-G---TTG-GTTG-G-G-T-TTTAC---ATTTT--ATTTTCCAT--AT--TCC--ATCG-TTT-A-GA-TG--CTTT-ATCTATAA-TACCGA-GAT-A-CAGTCTTACAAA-CAT---TTT-TCTGATAACGA--TTGTTGT-GAACTC-TAGTT-CAGTC-----A----TTT--------TT---------TACCGCT-ACT-GT-GATCA---GAA-TCA-GTC-AGTAA-AAAGG-AGAAAA-A---TTATAA-TTACAAG-CATGCGAA-AAGGGAT-TCCAAGACTTGAAGAGT-CA--CCATTACGATC-GTT-ATAAATGA-T-AAAAG-T-TTCGGACTGGCGAAAATTCATTCGGTCCGGTGAAG-CATAGAGAACT-GTCCGTCCAA--ATGTCC--TGTGATGA-T-TTT-ATTTTT
gi|20 : cAGTCTATCCCAAA-AGCACCAGTC-CG-TC-GG-TC--TTAA--CAG--GT-G-AAAATCAGT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AAA-TCGATCC--AGATG---TCTG--------A---AGGTTA-C-G---Ttcgcgaaga
gi|21 : acAGTCTATCCCAAA-AGCACCAGTC-CG-TC-G--TC--TTAA--CAG--GT-G-AAAATCAGT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AAA-TCGATCC--AGATG---TCTG--------A---AGGTT
gi|22 : acCT-ACC-AT-GATCA---G--------TC-AGTAA-G---G-AGTAAA-A---T--TAA-TTACAGG-AGTGCG---------TG--C--------AAGAGG-CA--TCAATATGATT-A---ATAAATGA-T-AAAAG-T-c
gi|23 : ctttattGA-T-AAAAG-T-TTCGGACTGGCGAAAATTCATTCGGTCCGGTGAAG-TATAGAGAACT-
gi|24 : TG-GTTG-G---T-TTTAC---ATTTT--ATTTTCCAT--AT--TCC--ATCG-TTT-A-GACCG--CTTT-ATC--TAA-TACCGA-GAT-ttttattttttcgcgaagac
gi|25 : TGTCCAA--ATGTCC--TGTGATGA-T-TTT-ATTTTT
gi|3 : anaacaacaAGGCTATCCCAAA-AGCACCGGTC-CG-TC-GG-TC--TTAAA-CAG--GTTG-AAAATTAAT-TTGGA-C-G-AT----GTA--CT-T-GTCAG---TA-------A-A-TCGGTTC--GGATG---TCCG--------A---AGGTTG-C-G---TTG-GTCG-G-G-T-TTTAC---A-TTT--ATTTTCAAT--AT--TCC--ATCG-TTT-A-GA-CG--CTTT-ATCT-TAA-TTATAA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAACGA--TTGTTGT-GAACTC-TATTT-CTGTC-----A---TTTT--------TT---------TACCG-T-ACC-AT-GATCA---GAA-TCA-GAC-AGTAA-GAAGG-AGTAAA-A---T--TAATTTACAAGACGTGCGAA-AAGGGATGTCC--------AAGAGG-CA--TCATTATGATC-ATT-ATAAATGATT-AAAAG-T-TTCAGACTAGTGAAAATTCA-TCGGTCCGGTGAAG-TATAGAGAACT-GTCTGCCCAA--ATGTCCCGTGTGATGA-T-TTT-ATTTTTacgcgaaggc
gi|4 : AGTCTATCCCAAA-AGCACAGGTC-CG-TC-AG-TC--TTAA--CAG--GT-G-AAAATCAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTCC--GGATG---TCCG--------A---AGGTTG-T-G---TTG-GTTG-G-G-T-TTTAC---ATTTA--ATTTTCCAT--AT--TCC--ATCG-TTT-A-GA-TG--CTTT-ATC--TAA-TACTAA-GAT-A-CAGTCTTACAAA-CCT---TTT-TCTGATAACGA--TTGTTGT-GAACTC-TATTT-CTGTC-----A---TTTT--------TT---------TACCACT-ACC-AT-GATCA---GAA-TCA-GTC-AGTAA-GAAGG-AGAAAA-A---T--TAA-TTACAAG-CGTGCGAA-AAGGGATGTCC--------AAGAGG-CA--TCATTATTATC-ATT-ATAANNNN-N-NNNNN-N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNN-NNNNNNNNNN--NNNNNN--NNNNNTGA-T-TTT-ATTTCTttgcgcgaagac
gi|5 : agcAGGCTTTCCAAAA-AGCACCGGTC-CG-TC-GG-TC--TTAA--CAG--GT-G-AAAATTAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTTC--GGATG---TCCG--------A---AGGTTG-CGG---TTG-GTCG-G-G-TGTTTAC---A-TTT--ATTTTCAAT--AT--TCC--ATCG-TTT-A-GA-CG--CTTTAATCT-TAA-TTATAA-GAT-A-CAGTCTT-CCAA-CGT---TTTGTCTGATCACGA--TTGTTGT-GAACTC-TATTT-CTGTC-----A---TTTT--------TT---------TACCGCT-ACC-AT-GATCGAT-GAA-TCA-GAC-AGTAA-GAAGA-GGTAAT-A---T--TAA-TTACAA--CGTGCGAA-AAGGGATGTCC---------AGA-G-CAATTCATTA-GATC-ATT-ATAAATGA-T--AAAG-T-TTCAGACTAGTG-AAATTCA-TCGGTCCGGTGAAG-TATAGAG--CTCGTCTGC---A--ATGTCC--TGTGATGA-TGTTT-ATTTTTtcgcaaagac
gi|6 : gcAGGCTTTCCAAAA-AGCACCGGTC-CG-TC-GG-TC--TTAA--CAG--GT-G-AAAATTAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTTC--GGATG---TCCG--------A---AGGTTG-CGG---TTG-GTC--G-G-T-TTTAC---A-TTT--ATTTTCAAT--AT--TCC--ATC--TTT-A-GA-CG--CTTTAATCT-TAA-TTATAA-GAT-ACCAGTCTTCC--A-CGT---TTT-TCTGAT-ACGA--TTGTTGT-GAACTC-TATTT-CTGTC-----A---TTTT--------TT---------TACCGCT-ACC-AT-GATCGAATGAA-TCA-GAC-AGTAA-GAAGA-GGTAAT-A---T--TAA-TTAC-AG-CGTGCGAA-AAGGGATGTCC--------AAGAGG-CA--TTAT--TGAT---TT-ATAAATGA-T-AAAAG-T-TTCAGACTAGTG-AAATTCA-TCGGTCCGGTGAAG-TATAGAGAACT-GTCTGCCC-A--ATGTCC--TGTGATGA-T-TTT-ATTTTTttcgcggaagac
gi|7 : cAGGCTATCCCAA---GCACCGGTC-CG-TC-GG-TC--TTAA--CAG--GT-G-AAAATTAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTTC--GGATG---TCCG--------A---AGGTTG-CGG---TTG-GTCG-G-----TTTAC---A-TTT--ATTTTCAAT--AT--TCC--ATCG-TTT-A-GA-CG--CTTT-ATCT-TAA-TTATAA-GAT-A-CAGTCTTAC-AA-CG-----TT-TCTGATAACGA--TTGTTGT-GAACTC-TATTT-CTGTC-----A---TTTT--------TT---------TACCGCT-ACC-AT-GATCA---GAATTCA-GAC-AGTAA-GAAGA-GT-AAA-A---T--TAA-TTACAAGACGTGCGAA-AAGGGATGTCC--------AAGAGG-CAT-TCATTA-GATC-ATT-ATAAA-GA-T-AAAAG-TCTTCAGACTAGTGAAAATTCA-TCGGTCCGGTGAAGTTATAGAGAACT-GTCTGCCCAA--A-GTCC--TGTGATGA-T-TTT-ATTTTTttcgcgaagact
gi|8 : cAGTCTATCCCAAA-AGCACCGGTC-CG-TC--------TTAA--CAG--GT-G-AAATTCAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TTGGTGC--GGATG---TCCA--------A---AGGTTG-C-GATTTTACATTG-G-G-T-TTTAC---ATTTT--ATT-------------CC--ATCG-TTT-A-GA-CG--ATTT-ATC--TAA-TACCGA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAACGA--TTATAGT-GAACTC-TATTT-CTGTC-----A----TTT--------TT---------TACCGCT-ACC-AT-GATCA---GAA-TCA-ATC-AGTAA-GAAGG-AGAAAA-A---T--TAA-TTACAAG-CGTTCGAA-AAGGAATGTCC--------AAGAGG-CA--TCATTATGGTC-ATT-ATAAATGA-T-AAAAG-T-TTCGGACTGGTGAAAATTCATTCGGTCCGGTGAAG-TATAGAGAACT-GTCTGTCCAGATATGTCC--TGTGATGA-T-TTT-ATTTTTtcgcgaag
gi|9 : cAGTCTATCTCAAA-AGCACCGGTC-TG-TC-GG-TC--TTTA--CAG--GT-G-AGAATCAAT-TTGGA-CCG-AT----GCA--CT-T-GTCAG---TA-------AGA-TCGGTCC--GGATG---TCCG--------A---AGGTTG-C-G---TTG-GTTG-G-G-T-TTTAC---ATTTT--ATTTTCCAT--AT--TCC--ATCA-TTT-A-GA-CG--CTTT-ATC--TAA-TACCGA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAACGA--TTGTTGT-GAACTC-TATTT-CTGTC-----A----TTT--------TT---------TACTGCT-ACT-GT-GATCA---GAA-TCA-GAC-AGTAA-GAAGG-AG-TAA-A---T--TAA-TTACAAG-CGTGTGAA-AAGGGATCCCC--------AAGAGG-CA--TCATTATGATC-ATT-ATAAATGA-T-AAAAG-T-TTCGGACTGGTGAAAATTCATTTGGTCCGATGAAG-TATAGACAACT-GTCAGTCCAA--ATGTCC--GGTGATGA-T-TTT-ATTTTTtcgcgaaga
blockSeqs : . A T . T . A TT T . A T . . AT A . GTT TCTTTAA A CA AGA GTCACAAA . A G ATT C C C T G AAA T . . AC AT T A . C . A TA . . . C . . G . . T T TTCTT TTTT ATACCCAC TTTACCCCG . A . AAT T . . . G A T G TA T A A AAGACTTG . AT T . A T A . C T T C AT CG . G A
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . T . . . . G . . . . A T . . . . . . . . . . . . T . . . . . AT . . . . . A . . . . A A . . T T . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . T . . . . A . . . . . T . . . . . . . . . . . . T . . . . . . . . . . . A . . . . . C . . . T . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . G . . . . . T . . . . . . . . . . . . T . . . . . . . . . . . T . . . . . A . . . T . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . G . . . . . T . . . . . . . . . . . . T . . . . . . . . . . . T . . . . . A . . . A . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . A . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . A . . . . . A . . . C . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . G . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . T . . . . . A . . . T . . . . . . N . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . G . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . T . . . . . A . . . T . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . G . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . A . . . . . A . . . T . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . G . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . A . . . T . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . G . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . A . . . T . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqCons : ** ** **** *** ** ** G* ** *** ** *** A*
originalCons : AGTCTATCCCAAA-AGCACCGGTC-CG-TC-GG-TC--TTAA--CAG--GT-G-AAAATCAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTCC--GGATG---TCCG--------A---AGGTTG-C-G---TTG-GTTG-G-G-T-TTTAC---ATTTT--ATTTTCCAT--AT--TCC--ATCG-TTT-A-GA-CG--CTTT-ATC--TAA-TACCGA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAACGA--TTGTTGT-GAACTC-TATTT-CTGTC-----A---TTTT--------TT---------TACCGCT-ACC-AT-GATCA---GAA-TCA-GTC-AGTAA-GAAGG-AG-AAA-A---T--TAA-TTACAAG-CGTGCGAA-AAGGGATGTCC--------AAGAGG-CA--TCATTATGATC-ATT-ATAAATGA-T-AAAAG-T-TTCGGACTGGTGAAAATTCATTCGGTCCGGTGAAG-TATAGAGAACT-GTCTGTCCAA--ATGTCC--TGTGATGA-T-TTT-ATTTTT
finalCons : AGTCTATCCCAAA-AGCACCGGTC-CG-TC-GG-TC--TTAA--CAG--GT-G-AAAATCAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTCC--GGATG---TCCG--------A---AGGTTG-C-G---TTG-GTTG-G-G-T-TTTAC---ATTTT--ATTTTCCAT--AT--TCC--ATCG-TTT-A-GA-CG--CTTT-ATC--TAA-TACCGA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAACGA--TTGTTGT-GAACTC-TATTT-CTGTC-----A---TTTT--------TT---------TACCGCT-ACC-AT-GATCA---GAA-TCA-GTC-AGTAA-GAAGG-AG-AAA-A---T--TAA-TTACAAG-CGTGCGAAA-AGGGATGTCC--------AAGAGG-CA--TCATTATGATC-ATT-ATAAATGA-T-AAAAG-T-TTCGGACTGGTGAAAATTCATTCGGTCCGGTGAAG-TATAGAGAACT-GTCTGTCCAA--ATGTCC--TGTGATGA-T-TTT-ATTTTT
Alignments
lowQualScore : 11 2
lowQualScore : 2 2 2 2 2 33 55 33 2 2 2 2 2 4444 33 2 2 333 7777777 2 33 333 88888888 333 2 7 444 2 2 2 2 2 333 4 22 0 22 22 22 22 2 2 2 22 4 11 2 2 2 2 0 2 444 2 33 2 2 2 55555 9999 88888888 888888888 2 2 2 777 2 2 2 2 2 2 2 666 33 2 5 44 99999999 2 55 1 2 2 2 2 2 2 6 2 2 44 0 44 3 3 3
lowQualScore : . . . . . .. .. .. . . . . . .... .. . . ... ....... . .. ... ........ ... . . ... . . . . . ... . .. . .. .. .. .. . . . .. . .. . . . . . . ... . .. . . . ..... .... ........ ......... . . . ... . . . . . . . ... .. . . .. ........ . .. . . . . . . . . . . .. . .. . . .
lowQualScore : 5 5 5 5 5 22 66 22 4 4 4 4 2 7777 11 2 2 999 2222222 2 11 999 11111111 999 4 1 111 4 2 2 2 2 999 6 99 5 99 99 99 55 1 1 1 99 2 33 2 2 2 4 6 4 111 4 22 4 4 4 99999 5555 11111111 999999999 1 1 1 444 4 5 5 5 5 5 5 999 44 5 0 11 11111111 5 99 2 5 5 5 5 5 5 4 9 9 22 1 22 1 1 1
consensus : AGTCTATCCCAAA-AGCACCGGTC-CG-TC-GG-TC--TTAA--CAG--GT-G-AAAATCAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTCC--GGATG---TCCG--------A---AGGTTG-C-G---TTG-GTTG-G-G-T-TTTAC---ATTTT--ATTTTCCAT--AT--TCC--ATCG-TTT-A-GA-CG--CTTT-ATC--TAA-TACCGA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAACGA--TTGTTGT-GAACTC-TATTT-CTGTC-----A---TTTT--------TT---------TACCGCT-ACC-AT-GATCA---GAA-TCA-GTC-AGTAA-GAAGG-AG-AAA-A---T--TAA-TTACAAG-CGTGCGAA-AAGGGATGTCC--------AAGAGG-CA--TCATTATGATC-ATT-ATAAATGA-T-AAAAG-T-TTCGGACTGGTGAAAATTCATTCGGTCCGGTGAAG-TATAGAGAACT-GTCTGTCCAA--ATGTCC--TGTGATGA-T-TTT-ATTTTT
Reference ( family-6122 ) : AGTCTATCCCAAA-AGCACCGGTC-CG-TC-GG-TC--TTAA--CAG--GT-G-AAAATCAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTCC--GGATG---TCCG--------A---AGGTTG-C-G---TTG-GTTG-G-G-T-TTTAC---ATTTT--ATTTTCCAT--AT--TCC--ATCG-TTT-A-GA-CG--CTTT-ATC--TAA-TACCGA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAACGA--TTGTTGT-GAACTC-TATTT-CTGTC-----A---TTTT--------TT---------TACCGCT-ACC-AT-GATCA---GAA-TCA-GTC-AGTAA-GAAGG-AG-AAA-A---T--TAA-TTACAAG-CGTGCGAA-AAGGGATGTCC--------AAGAGG-CA--TCATTATGATC-ATT-ATAAATGA-T-AAAAG-T-TTCGGACTGGTGAAAATTCATTCGGTCCGGTGAAG-TATAGAGAACT-GTCTGTCCAA--ATGTCC--TGTGATGA-T-TTT-ATTTTT
gi|1 : TATCCCAAATAGCACCGGTC-CG-TTTGG-TCCCTTAAACCAG--GT-GTAAAAT-AAT-TGGAG-CCGCATAGGGGTA--CT-TTGTCAG---TA-------AAT-TCTGTCC--GGGTG---TCCA--------ATATAGGTTG-C-G---TT--------------TTAC---ATTTCTAATTTTCCATTAAT--TCC----CGGTTT-AAGA-CGGCTTTT-ATC--TAAATACCGATGATTA-CAGTCTTACAAAACGTAGTTTC-TCTGATAACGGATTTGTTGTTGAACTC-TATTT-TCGTT-----A---TGTT--------T-----------ACTGTTTACC-GTTGATCA---GAA-TCAAGTCCAGTAAAGAAGG-AG-AAA-AAAAT--TTA-TTACAAG-CTTTCGAACAAAAGATGTCC--------AAGAGGCCA--TCATTATGATCAATT-ATAAATGA-T-AAAAGTT-TTTGGACTTNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNN-NNNNNNNNNN--NNNNNA--TGTGATGATT-TTT-ATTTTT
gi|10 : gtgctGTCTATCCCAAA-ATCATCGGTC-CG-TC-GG-TC--TTAA--CAG--GT-G-AAAATCAAT-TTGGA-CCG-AT----GTT--CT-T-GTCAG---TA-------AGA-TCGGTCC--GGATG---TCCG--------A---AGGTTG-T-G---TTG-GTTG-G-GTT-TTTGC---ATTTT--ATTTTCCAT--AT--ACC--ATCT-TTT---GA-CA--CTTT-ATC--TAT-TACTG---------AGTCTGACAAA-CG---------------------TTGTTGT-GAACTC-TATTT-CTGTCTTCTTT---TTTT--------TT---------TACCACT-ACC-AT-GATCA---GAA-TCA-GTC-AGTAA-GAAGG-AG-AAATA---T--TAA-TTACAAG-CGTGCGAA-AAGGGATGTCC--------AAGAGG-CA--TCATTATGATC-ATT-ATAAATGA-T-AAAAG-T-TTCAGACTGGTGAAAATTCATTCGGTTCGGTGAAG-CATAGAGAACT-GTCTGTCCAA--ATGTCC--TGTGATGA-T-TTT-TTTTTTtcgcaaaga
gi|11 : AGTCTATCCCAAA-AGCACCGGTC-CG-TC-GG-TC--TTAA--CAG--GT-G-AAAATCAAT-TTGGA-CAG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTCC--GGATG---TCCA--------A---AGGTTG-T-A---TTG-GTTG-G-G-T-TTTAC---A-TTT--ATTTTCCAT--AT--TCC--ATCG-TTT-A-GA-CG--CTTT--TC--TAA-TACCGA--AT-A-CAGTCTTACAAA-CG----TTT-TCTGATAACGA--TTATAGT-GAACTC-TATTT-CTATC-----A----TTT--------TT---------TACCGCT-ACC-AT-GATCA----AA-TCA-GTC-AGTAA-GAAGG-AGAAAA-A---T--TAA-TTACAAG-CGTTCGAA--------------------AAGAGG-CA--TCATTATGATC-ATT-ATAAATGA-TAAAAAG-T-TTTGGACTGGTGAAAATTCATTCGGTCCGGTGAAG-TATAGAGAACT-GTCTGTCCAA--A--TCC--TGTGATGA-T-TTT-ATTTTTttcgtgaagac
gi|12 : cCTATCCCAAA-AGCAC-GGTC-C--TC-G--TC--T-AA--CAG--CT-G-AAAATCAATATTGAATCCG-AT----GTAATCT-T-GT-AG---TATCTTTAAAGAATCGGTC----GGTG---TCAG--------A-----GTTG-C-G---TTG--TTGCGCG-T-TTTAC---ATTTT--ATTTCCAAT---C--TCC--AC---TTT-A-AT-CG--CTTT-ATC--TAA-TACCGA-GAT-A-CAATCTTATAAA-CGT---TTT-TCTGATAACGA--TTATAGT-GAATTC-TATTTTCTGTC-----A---TTTT--------TT----------ACCGCT-TTC-AT--ATCA---GAA-TCA-GTC-AGTAA-GAAGGGAG-AAA-AG--T--TAA-TTACAAG-CATTCGAA-AAGGGATGTCC--------AAGAGG-CA--TCATTATGATC-ATT-ATAAATGA-T-AAAAG-T-TTCGGCCTGGTGAAAATTCATTCGGTTCAGTGAAA-TATAGAGAACT-GTCtcgcgaaga
gi|13 : TG-G-G-T-TTTAT---ATTTT--ATTTTCCAC--AT--ACC--ATCA-TTT-C-GA-TG--CTTT-ATC--TAA-TACCGA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAACGA--TTGTTGT-GAATTC-TATTT-CTGTC-----A---TTTT--------TT----------ACTGCT-ACC-AT-GATCA---GAA-TCA-GTC-AGTAA-AAAGA-GA-AAA-A---T--TAA-TTACAAG-CGTGCTAA---GGTATGTCT--------AAGAGG-CA--TCATTATGATC-ATT-ATAAATGA-T-AAAAG-T-TTCGGACTGGTGAAAATTCATTCGGTTCGGTGAAT-TATAGAGAACT-GTCTGTCCAA--ATGTTC--TGTGATGA-T-TTTAATTTTT
gi|14 : G-GT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTCC--GGATA---TCCG--------G---AGGTTT-T-G---TTG-GTTG-G-G-T-TTTAC---ATTTT--ATTTTCCAT--AT--TCC--ATTG-TTT-A-GG-TG--CTTT-ATT--TAA-TATCGA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAGCGA--TTGTTGT-GAACTC-TATAT-CTGTC-----A----TTT--------TT---------TACCGCT-ACC-AT-GATCA---GAA-TCA-GTC-AGTAT-GAAGG-AGAAAA-A---T--TAA-TTACAAG-CGTGCGAA-CAGGGATGTCC--------AAGAGG-CA--TCATT---ATC--------AATGA-T-AAAAG-T-cgcgaaga
gi|15 : AGTCTATCTCAAA-AGCACTGGTT-CG-TC-TG-TC--TTAA--CAG--GT-A-AAAATCAAT-TCGGA-CCG-AT----GTA--TA-T-GTCAG---TA-------AAA-TCGGTCC--AGATG---TCCG--------A---AGGTTG-C-G---TTG-GTTG-A-G-T-TTTAC---ATTTT--ATTTTCAAT--AT--GGA--ATCG-TTT-A-GA-CG--CTTT-ATC--TAA-TACCAA-GAT-A-CAGTCTTACGAA-TGT---TTT-ACTGATAACGA--TTATTGT-GAACTC-TATTT-CCGTC-----A---TTTTATACCCACTTTTTACCCCGTACCGCT-ACCAAT-GA
gi|16 : C--TTAA--CAG--GT-G-AAAATCAAT-TTGGA-CCA-AT----ATT--CT-T-GTCAG---TA-------AAA-TCGGTCC--GGATG---TCCG--------A---AGGTTG-T-G---TTG-GTTG-G-G-T-TTTAC---ATTTT--ATTTTCCAT--AT--TCCATATCA-TTT-C-GA-CG--CTTT-ATC--TAA-TACTGA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAACGA--TTGTTGT-GAACTC-TATTT-CTGTC-----ATTTTTTT--------TT---------TACCGCT-ACC-AT-GATCA---GAA-
gi|17 : AGTCTATCCCAAA-GTCAC--GTCACGTTC-GGTTC--TTAA--CAGTTGT-G----ATCAAT-CCATA-CCG--T----GCA--CTAT-GTAAAGTTTA-------GAA-TTGGTCCCAAGATGAGATTCGGTCACAAAA---AGGTTGAT-G---TTG-GTTG-G-G---TTTACAAAATTAT--ATTTC---T--AT--TCC--A-CG-TTTAA-GA-CA--CTCT-TTC--TA
gi|18 : cTC--------TT---------TATTCCT-ACC-AT-GATCA---G--------TC-AGTAA-GA--G-TA-AAA-A---T--TAA-TTACAGG-AGTGCG---------TG--C--------AAGAGG-CA--TCATCAATATC-ATTAATAAtgatttaccgtattcctgccttcgcatttt
gi|19 : TC--ATATTCCAT--ATACTCC---TC---TG-A-GA-CG--CTTT-A----------------GT---CAGTCGTACTCA-CGT---TTT-TCTCATAACGA--TTCTTGT-GAACTCTTATTT-CTGTC-----A---TTTT--------TT---------TACCACT-ACC-AT-GAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcgtaaagact
gi|2 : ccAGTCTATCCCAAA-AGCATCGGTC-CG-CC-GG-TC--TTAA--CAG--GT-G-AAAATCAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTCT--GGGTG---TCCA--------A---AGGTTG-C-G---TTG-GTTG-G-G-T-TTTAC---ATTTT--ATTTTCCAT--AT--TCC--ATCG-TTT-A-GA-TG--CTTT-ATCTATAA-TACCGA-GAT-A-CAGTCTTACAAA-CAT---TTT-TCTGATAACGA--TTGTTGT-GAACTC-TAGTT-CAGTC-----A----TTT--------TT---------TACCGCT-ACT-GT-GATCA---GAA-TCA-GTC-AGTAA-AAAGG-AGAAAA-A---TTATAA-TTACAAG-CATGCGAA-AAGGGAT-TCCAAGACTTGAAGAGT-CA--CCATTACGATC-GTT-ATAAATGA-T-AAAAG-T-TTCGGACTGGCGAAAATTCATTCGGTCCGGTGAAG-CATAGAGAACT-GTCCGTCCAA--ATGTCC--TGTGATGA-T-TTT-ATTTTT
gi|20 : cAGTCTATCCCAAA-AGCACCAGTC-CG-TC-GG-TC--TTAA--CAG--GT-G-AAAATCAGT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AAA-TCGATCC--AGATG---TCTG--------A---AGGTTA-C-G---Ttcgcgaaga
gi|21 : acAGTCTATCCCAAA-AGCACCAGTC-CG-TC-G--TC--TTAA--CAG--GT-G-AAAATCAGT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AAA-TCGATCC--AGATG---TCTG--------A---AGGTT
gi|22 : acCT-ACC-AT-GATCA---G--------TC-AGTAA-G---G-AGTAAA-A---T--TAA-TTACAGG-AGTGCG---------TG--C--------AAGAGG-CA--TCAATATGATT-A---ATAAATGA-T-AAAAG-T-c
gi|23 : ctttattGA-T-AAAAG-T-TTCGGACTGGCGAAAATTCATTCGGTCCGGTGAAG-TATAGAGAACT-
gi|24 : TG-GTTG-G---T-TTTAC---ATTTT--ATTTTCCAT--AT--TCC--ATCG-TTT-A-GACCG--CTTT-ATC--TAA-TACCGA-GAT-ttttattttttcgcgaagac
gi|25 : TGTCCAA--ATGTCC--TGTGATGA-T-TTT-ATTTTT
gi|3 : anaacaacaAGGCTATCCCAAA-AGCACCGGTC-CG-TC-GG-TC--TTAAA-CAG--GTTG-AAAATTAAT-TTGGA-C-G-AT----GTA--CT-T-GTCAG---TA-------A-A-TCGGTTC--GGATG---TCCG--------A---AGGTTG-C-G---TTG-GTCG-G-G-T-TTTAC---A-TTT--ATTTTCAAT--AT--TCC--ATCG-TTT-A-GA-CG--CTTT-ATCT-TAA-TTATAA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAACGA--TTGTTGT-GAACTC-TATTT-CTGTC-----A---TTTT--------TT---------TACCG-T-ACC-AT-GATCA---GAA-TCA-GAC-AGTAA-GAAGG-AGTAAA-A---T--TAATTTACAAGACGTGCGAA-AAGGGATGTCC--------AAGAGG-CA--TCATTATGATC-ATT-ATAAATGATT-AAAAG-T-TTCAGACTAGTGAAAATTCA-TCGGTCCGGTGAAG-TATAGAGAACT-GTCTGCCCAA--ATGTCCCGTGTGATGA-T-TTT-ATTTTTacgcgaaggc
gi|4 : AGTCTATCCCAAA-AGCACAGGTC-CG-TC-AG-TC--TTAA--CAG--GT-G-AAAATCAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTCC--GGATG---TCCG--------A---AGGTTG-T-G---TTG-GTTG-G-G-T-TTTAC---ATTTA--ATTTTCCAT--AT--TCC--ATCG-TTT-A-GA-TG--CTTT-ATC--TAA-TACTAA-GAT-A-CAGTCTTACAAA-CCT---TTT-TCTGATAACGA--TTGTTGT-GAACTC-TATTT-CTGTC-----A---TTTT--------TT---------TACCACT-ACC-AT-GATCA---GAA-TCA-GTC-AGTAA-GAAGG-AGAAAA-A---T--TAA-TTACAAG-CGTGCGAA-AAGGGATGTCC--------AAGAGG-CA--TCATTATTATC-ATT-ATAANNNN-N-NNNNN-N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNN-NNNNNNNNNN--NNNNNN--NNNNNTGA-T-TTT-ATTTCTttgcgcgaagac
gi|5 : agcAGGCTTTCCAAAA-AGCACCGGTC-CG-TC-GG-TC--TTAA--CAG--GT-G-AAAATTAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTTC--GGATG---TCCG--------A---AGGTTG-CGG---TTG-GTCG-G-G-TGTTTAC---A-TTT--ATTTTCAAT--AT--TCC--ATCG-TTT-A-GA-CG--CTTTAATCT-TAA-TTATAA-GAT-A-CAGTCTT-CCAA-CGT---TTTGTCTGATCACGA--TTGTTGT-GAACTC-TATTT-CTGTC-----A---TTTT--------TT---------TACCGCT-ACC-AT-GATCGAT-GAA-TCA-GAC-AGTAA-GAAGA-GGTAAT-A---T--TAA-TTACAA--CGTGCGAA-AAGGGATGTCC---------AGA-G-CAATTCATTA-GATC-ATT-ATAAATGA-T--AAAG-T-TTCAGACTAGTG-AAATTCA-TCGGTCCGGTGAAG-TATAGAG--CTCGTCTGC---A--ATGTCC--TGTGATGA-TGTTT-ATTTTTtcgcaaagac
gi|6 : gcAGGCTTTCCAAAA-AGCACCGGTC-CG-TC-GG-TC--TTAA--CAG--GT-G-AAAATTAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTTC--GGATG---TCCG--------A---AGGTTG-CGG---TTG-GTC--G-G-T-TTTAC---A-TTT--ATTTTCAAT--AT--TCC--ATC--TTT-A-GA-CG--CTTTAATCT-TAA-TTATAA-GAT-ACCAGTCTTCC--A-CGT---TTT-TCTGAT-ACGA--TTGTTGT-GAACTC-TATTT-CTGTC-----A---TTTT--------TT---------TACCGCT-ACC-AT-GATCGAATGAA-TCA-GAC-AGTAA-GAAGA-GGTAAT-A---T--TAA-TTAC-AG-CGTGCGAA-AAGGGATGTCC--------AAGAGG-CA--TTAT--TGAT---TT-ATAAATGA-T-AAAAG-T-TTCAGACTAGTG-AAATTCA-TCGGTCCGGTGAAG-TATAGAGAACT-GTCTGCCC-A--ATGTCC--TGTGATGA-T-TTT-ATTTTTttcgcggaagac
gi|7 : cAGGCTATCCCAA---GCACCGGTC-CG-TC-GG-TC--TTAA--CAG--GT-G-AAAATTAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TCGGTTC--GGATG---TCCG--------A---AGGTTG-CGG---TTG-GTCG-G-----TTTAC---A-TTT--ATTTTCAAT--AT--TCC--ATCG-TTT-A-GA-CG--CTTT-ATCT-TAA-TTATAA-GAT-A-CAGTCTTAC-AA-CG-----TT-TCTGATAACGA--TTGTTGT-GAACTC-TATTT-CTGTC-----A---TTTT--------TT---------TACCGCT-ACC-AT-GATCA---GAATTCA-GAC-AGTAA-GAAGA-GT-AAA-A---T--TAA-TTACAAGACGTGCGAA-AAGGGATGTCC--------AAGAGG-CAT-TCATTA-GATC-ATT-ATAAA-GA-T-AAAAG-TCTTCAGACTAGTGAAAATTCA-TCGGTCCGGTGAAGTTATAGAGAACT-GTCTGCCCAA--A-GTCC--TGTGATGA-T-TTT-ATTTTTttcgcgaagact
gi|8 : cAGTCTATCCCAAA-AGCACCGGTC-CG-TC--------TTAA--CAG--GT-G-AAATTCAAT-TTGGA-CCG-AT----GTA--CT-T-GTCAG---TA-------AGA-TTGGTGC--GGATG---TCCA--------A---AGGTTG-C-GATTTTACATTG-G-G-T-TTTAC---ATTTT--ATT-------------CC--ATCG-TTT-A-GA-CG--ATTT-ATC--TAA-TACCGA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAACGA--TTATAGT-GAACTC-TATTT-CTGTC-----A----TTT--------TT---------TACCGCT-ACC-AT-GATCA---GAA-TCA-ATC-AGTAA-GAAGG-AGAAAA-A---T--TAA-TTACAAG-CGTTCGAA-AAGGAATGTCC--------AAGAGG-CA--TCATTATGGTC-ATT-ATAAATGA-T-AAAAG-T-TTCGGACTGGTGAAAATTCATTCGGTCCGGTGAAG-TATAGAGAACT-GTCTGTCCAGATATGTCC--TGTGATGA-T-TTT-ATTTTTtcgcgaag
gi|9 : cAGTCTATCTCAAA-AGCACCGGTC-TG-TC-GG-TC--TTTA--CAG--GT-G-AGAATCAAT-TTGGA-CCG-AT----GCA--CT-T-GTCAG---TA-------AGA-TCGGTCC--GGATG---TCCG--------A---AGGTTG-C-G---TTG-GTTG-G-G-T-TTTAC---ATTTT--ATTTTCCAT--AT--TCC--ATCA-TTT-A-GA-CG--CTTT-ATC--TAA-TACCGA-GAT-A-CAGTCTTACAAA-CGT---TTT-TCTGATAACGA--TTGTTGT-GAACTC-TATTT-CTGTC-----A----TTT--------TT---------TACTGCT-ACT-GT-GATCA---GAA-TCA-GAC-AGTAA-GAAGG-AG-TAA-A---T--TAA-TTACAAG-CGTGTGAA-AAGGGATCCCC--------AAGAGG-CA--TCATTATGATC-ATT-ATAAATGA-T-AAAAG-T-TTCGGACTGGTGAAAATTCATTTGGTCCGATGAAG-TATAGACAACT-GTCAGTCCAA--ATGTCC--GGTGATGA-T-TTT-ATTTTTtcgcgaaga