lowQualScore : 1111111111111111111111111111111111
lowQualScore : 444 1 3333333333333333333333333 1111111 2222 0000000000000000000000000000000000 6666666666666666666666666666666 11111111 22222 55555
lowQualScore : 000 2 2 2 2 33 5 33 7777777777777777777777777 1111111 3333 2 8888888 6666666666666666666666666666666666 44 2 2 2 1 1 222 22 2 77 9999999 22 33 8888888888888888888888888888888 33 0 2 44 66666666 2 22222 2 33 2 11111
lowQualScore : ... . . . . .. . .. ......................... ....... .... . ....... .................................. .. . . . . . ... .. . .. ....... .. .. ............................... .. . . .. ........ . ..... . .. . .....
lowQualScore : 333 7 7 7 7 44 2 11 2222222222222222222222222 1111111 9999 4 1111111 1111111111111111111111111111111111 44 0 0 0 8 8 888 66 0 33 8888888 99 55 0000000000000000000000000000000 33 9 7 99 88888888 4 66666 4 22 4 77777
consensus : TACGAAA--G-CC-GGCT-GG-GC--TCATTTT--T----GG------G-------A----AA-------AAATAAT---CTCG-T-T---A-TAAC-GA-ATAAAC----TAAGCTCGT---ATT-A-T-TCG-TTAT-A-A-C-GA-G--ATAATTAT--C-TCGTT-----T-A--TAA-CGAG-A--ATA-A-C-TA-A--C-CGTT-TAT-T-AACGAGTTAA-TTTTTTTTTAT-TTTTTC----C---AAA-A-----T-GA--GCCC-AGCCGG----CTTTCGTAC
Reference ( gi|1 ) : TACGAA---G-CC-GGCT-GG-GC--TCAATTT--T----GG------G-------A----AA-------AAATAAT---CTCG-T-T---A-TAAC-GACATAAAC----TAAGCTCGT---ATT-A-T-TCG-TTAT-A-A-C-GA-G--ATAATTAT--C-TCGTT-----T-A--TAA-CGAG-A--ATA-A-C-TA-A--C-CGTT-TAT-T-AACGAGTTAA-TTTTTTTTTAT-TTTTTC----C---AAA-A-----T-GA--GCCC-AGCCGGTC--TTTTCGTAC
gi|2 : TACGAAAG-G-CC-GACT-GG-GC--TCAGTTTGTT----GAC-----G-------A----AATAT----AAAAAATTAACTCG-T-TTTTA-TAAC-GAGTTA--C----TA---TC-------------TCA-TTAT-A-A-C-GAGG--ATAGTTAT--C-TC-TT-----T-G--TAA--GAG----------C-T---------TT-TAT-------GGTTTA-TTTTCTCTCAT-TGTTTTGCTAC---AAA-AGCGGCT-GG--GCTC-A
gi|4 : TACGGAAAGG-CC-GACTTGG-GC--TCCATTT--TTTT-GGAC----G-------A----AATAAAAGAAAATTAA---CTCC-T----------C-GG--TAAAC-----GAGTTTAG---ATT-A-TCTCA-TTAT-A-A-C-GA-GTTATGATT-T--C-TT-TT-----T-A--AAA-GGAG-
gi|3 : cataaaaagcTACGAAA--G-CC-GGTT-GG-GA--CCA-TCT--T----TT------G-------A----AA-------AAATA----------------------------AAA-----TAA-------------A-T-TCT-TTAT-A-A-C-GA-G--TTAGT-AT--C-TCGTT---------------------------------A--T-CAGT-TAT---AACGAGTTA------TTTTTCT-CCTCTC----C---AAA-AA----T-GA--GCCC-AGCCGG----TTTTCGTA
gi|3 : TACGAA---AACC-GGCT-GG-GC--TCATTTT--T----GGA-----G-------AGGAGAA-------AAATAA----CTCG-T-T---A-TAACTGAT---AAC-----GAG---AT---ACTAA-C-TCG-TTAT-A-A-A-GA----AT--TTAT--T-TTATT-----T-
gi|7 : TACGAAA--G-CC-GGCT-GG-GC--TCA------T----G---------------------A-------TACTAAT----TCA-T-T---A-TAAC-GAAATA---------------T---ATA-A-C-TCC-TTAT-A-A-C----G--ATAATTAT--A-TTG-T-----T-A--TAA-CGAG-A--tttcaaaagatggtcccaaccggctttcgta
gi|10 : TACGAAA--G-CC-GGCT-GG-GC--TCATTTT--T----GGAAATAAA-------A----AA-------AAATAA----CTCG-T-T---
gi|11 : gTACGAAA--G-CC-GGCT-GG-GC--TCATTTT--TTGGGGG------G-------A----AA-------AATTAA----CTCG-T-T---A-
gi|15 : cTACGAAC--G-CC-GGCT-GG-GC--TCATTTT--T----GG-------------------AA-------AAATAA
gi|12 : aTNCGAAA--G-CC-GGCT-GG-GC--TCATTTT--T----TG------A-------A----TA-------AAATAA
gi|17 : agTACGAAA--G-CC-GGCT-GG-GC--TCATTTT--T----TG------G-------A----AA-------Aagaaaaa
gi|6 : gACGAAA--G-CC-GGCT-GG-GC--TCATTTT--T----GGAAAAATA-------A----AA-------AAAAAATTAACTCG-T-T---ACTAAC-G-----AGT----TAGG---------TT-A-TCTCG-TTAT-AGA-C-GA-G--ATAATTt
gi|5 : ACGAAA--G-CTTGGCT-GA-TTCTTCAGTTT--T----GG------ACGAAATAA----AA-------AAAAAATTAACTCG-T------------GAAATAAACGAGTTAGGATCTC---ATT-A-T-T----TA--A-A-C-GA-G--ATAGTTAT--C-TCtagctgtgga
gi|16 : aaACGAAA--G-CC-GGCT-GG-GC--TCATTTT--T----GT------A-------A----AA-------AAA
gi|18 : ACGAAA--G-CC-GGCT-GA-GC--TCATTTT--T----GA------A-------A----Aaa
gi|13 : cACGAAA--G-CT-GGCT-TGTGC--TTATTTT--T----GG-------------------AA-------AAATAAT---t
gi|9 : C--TCGATTA--T----AA------C-------G----AA-------TAACAAA---CTCG-T-T---A-TAAC-GAGAT--AC----TTAACTCG----GTT-A---------AT-A-A-C-GA-G--ATAACTAaaagaaaaa
gi|4 : ataattaTTT--T----AA------A-------A----AG-------AAATCATAA-CTCG-T-T---A-TAAT-GAGATAATC----TAAACTCGT----TT-A---CCG--------A-G-GA-G--TTAATTTT--C-T--TT-----T-A--T
gi|2 : cataaaaagcctcc--T----GA------G-------A----GA-------AAATAA-------------------AC---CATAAA-------AGCTC-----------------TTAC-A-A-A-GA-G--ATAACTAT--CCTCGTT-------A--TAA-TGAG-ATAGTA-A-C-T-------CGTTATAA-A-AACGAGTTAA-TTTTTTAT-AT-TTCGTCAA--C---AAA-C-----T-GA--GCCC-AGTCGG-C--CTTTCGTAttcgtccaaaaaaatggagcccaagtcggcctttccgta
gi|6 : -------AAATTAT---CTCG-TCT---A-TAAC-GAGATAACC----TAA-CTCG-----TT-A---------GT-A-A-C-GA-G--TTAATT-T--T-TTTTT-----T-A--Tttgttttgctacaaaagcggctgggctca
gi|9 : acgaaagccggctgggctcatttttggaaaaATAATTA-CTCGAT-T---A-TAAC-GA-ATAA------CAAACTCGT----------------TAT-A-A-C-GA-G--ATACTTAA--C-TCGGT-----TAA--TAA-CGAG----ATA-A-C-TA-agctgtgga
gi|9 : AT---CTCG-T-T---A-TAAC-GA--------------GTTTGT-----T-A-T-TCG-TTAT-A-ATC-GA-G---TAATTAT--
gi|9 : AT---CTCG-T-T---ATTAAC-----CGAGT----TAA----GT---AT----C-TCG-TTAT-A-A-C-GA-G--TTTGTTAT----TCG-T-----T-A--TAATCGAG-----TA-A-T-TA-acttaactcggttaataacgagataacta
gi|7 : aT---CTCG-T-T---A-TAAC-AATATA-------------------ATT-A---TCG-TTAT-A-A-G-GA-G--TTATATAT--T-TCG-T-----T-A--TAA-TGAaacta
gi|7 : tacgaaagccggctgggctcatgatactaatC----TGGGCTCATGATACT-AAT-TCA-TTAT-A-A-C-GA-A--ATATATAA--C-TC-CT-----T-A--TAA-CG------ATA-A-T-TATA--T-TG-T-TA--T-AACGAG
gi|9 : tacgaaagccgg---ATT-A-C-TCGATTAT-A-A-C-GA----ATAACAAA--C-TCGTT-------A--TAA-CGAG----ATA-C-T-TA-A--CTCGGT-TAA-T-AACGAGATAA-CTa
gi|9 : ataTT-A-TCTCG-TTATTA-A-CCGA-G--TTAAGTAT--C-TCG-T-----T-A--TAA-CGAG-a
gi|4 : ataattactcgattataacgaataacaaa-TCC-TTTT-A-A-A-AA-G--A-AATCATAAC-TCGTT-------A--TAA-TGAG-A---TA-ATC-TA-AACT-CGTT-TAC-C-GAGGAGTTAA-TTTTCTTTTAT-TTCGTC----CAAAAAA-A-----TGGA--GCCCAAGTCGGCC--TTTCCGTActa
gi|7 : cataaaaagcc-TCG-TTAT-A-A-C-AA-T--ATAATTA-----TCG-T-----T-A--TAA-GGAGTT--ATATA-T-T-----T-CG-T-TA--T-AATGAATTAG---------TAT-C-----------------A-----T-GA--GCCC-AGCCGG----CTTTCGTA
gi|5 : -GA-G--ATAACTAT--C-TCGTT-----T-AAATAA-TGAG-A--TC----C-TA-A--CTCGTT-TAT-TTCACGAGTTAATTTTTTTTTTAT-TTCGTC----C---AAA-AC----T-GAAGAATC-AGCCAAGC---TTTCGTga
gi|3 : aa-GA-G--AAAAATAA--C-TCGTTATAACTGA--TAA-CGAG-A---TA---C-TA-A--CTCGTT--AT---AAAGAATTTA-TTTT-----AT-TTTTTC----A---AAAGA-----T-GG--TCCC-AACCGG----CTTTCGTA
gi|6 : tacgaaaaccggctgggctcatttttggagagAATTAT--C-TCGTC-----T-A--TAA-CGAG-A---TA-A-CCTA-A--CTCGTT--AG-T-AACGAGTTAA-TTTTTTTTTTA-TTTTTC----CA--AAA-A-----T-GA--GCCC-AGCCGG----CTTTCGT
gi|8 : T-----T-A--TAA-CGAG-AT-ATA-T-T-TA-A----------ATCT-CACGAGTTGA-TTTTTTTTT-C-TTCTTC----CAA-AAA-A-----T-GA--GCCC-AGGCAGTCGGCTTTCGtagctgtgga
gi|11 : g-T-AACGAGTTAA-TTTTTCCCC--------C----C---AAA-AAA---T-GA--GCCC-AGCCGG----CTTTCGTA
gi|10 : c-AACGAGTTA--TTTTTTTTTAT-TT---C----C---AAA-AA----T-GA--GCCC-AGCCGG----CTTTCGTAC
gi|12 : -TTTTTCTTTAT-TTTATT----C---AAA-AAA---T-GA--GCCC-AGCCGG----CTTTCGNAC
gi|16 : a-TTTTTTTTTA-------C----A---AAA-A-----T-GA--GCCC-AGCCGG----CTTTCGT
gi|14 : TTTATCTTTTTC----A---AAA-A-----T-GA--GCTT-AGCTGG----CTTTCGTA
gi|15 : TTAT-TTTTCC----A---AAA-A-----T-GA--GCCC-AGCCGG----CGTTCGTA
gi|17 : aTTTTC----C---AAA-AAA---T-GA--GCCC-AGCCGG----CTTTCGTAC
gi|18 : TTTTC----A---AAA-A-----T-GA--GCTC-AGCCGG----CTTTCGTt
Alignments
lowQualScore : 1111111111111111111111111
lowQualScore : 22222222 22222222222 0000000000000000000000000 11111 4444444444444444 11111 22222222 22222
lowQualScore : 4 4 4 4 22222222 777 99999999999 6 6 7777777777777777777777777 5 66 4 00000 2 7777777777777777 3 5 77777 99 44 22222222 11111 3 55 7777 3 4 99 55
lowQualScore : . . . . ........ ... ........... . . ......................... . .. . ..... . ................ . . ..... .. .. ........ ..... . .. .... . . .. ..
lowQualScore : 0 0 0 0 33333333 000 77777777777 7 7 7777777777777777777777777 0 11 4 11111 3 6666666666666666 1 0 66666 99 44 33333333 44444 6 00 7777 6 0 55 55
consensus : TACGAAAG-CCGGCTGG-GCTCA-TTT-TT----GG-GAAA---AAATAAT---CTCG---TTATAACG-A-ATAA--CA----AGCTC-TAT-AT-TCNTTATAACGA-GATAATTAT--C-TCGTTT-A--TAACGAGA--ATAA-CTAA--C-CGTT-TAT-T-AACGAGTTAA-TTTTTTTTTATTTTNTC----C---AAAA-----T-GA--GCC----C-AGCC-GG--C--TTTCGTAC
Reference ( family-6069 ) : TACGAAAG-CCGGCTGG-GCTCA-TTT-TT----GG-GAAA---AAATAAT---CTCG---TTATAACG-A-ATAAACTA----AGCTCGTATTAT-TCGTTATAACGA-GATAATTAT--C-TCGTTT-A--TAACGAGA--ATAA-CTAA--C-CGTT-TAT-T-AACGAGTTAA-TTTTTTTTTATTTTTTC----C---AAAA-----T-GA--GCC----C-AGCC-GG--C--TTTCGTAC
gi|1 : TACGAA-G-CCGGCTGG-GCTCA-ATT-TT----GG-GAAA---AAATAAT---CTCG---TTATAACG-ACATAAACTA----AGCTCGTATTAT-TCGTTATAACGA-GATAATTAT--C-TCGTTT-A--TAACGAGA--ATAA-CTAA--C-CGTT-TAT-T-AACGAGTTAA-TTTTTTTTTATTTTTTC----C---AAAA-----T-GA--GCC----C-AGCC-GGTCT--TTTCGTAC
gi|10 : -AACGAGTTA--TTTTTTTTTATTT---C----C---AAAAA----T-GA--GCC----C-AGCC-GG--C--TTTCGTAC
gi|11 : TACGAAAG-CCGGCTGG-GCTCA-TTT-TTTGGGGG-GAAA---AATTAA----CTCG---TTA
gi|12 : c-TTTTTCTTTATTTTATT----C---AAAAAA---T-GA--GCC----C-AGCC-GG--C--TTTCGNAC
gi|13 : aACGAAAG-CTGGCTTGTGCTTA-TTT-TT----GG---AA---AAATAAT---
gi|14 : TACGAAAG-CCAGCTAA-GCTCA-TTT-TT-----G-AAAA---AGATAAaaagaaaaa
gi|15 : TACGAACG-CCGGCTGG-GCTCA-TTT-TT----GG---AA---AAATAAa
gi|16 : aACGAAAG-CCGGCTGG-GCTCA-TTT-TT----GT-AAAA---AAA
gi|17 : TACGAAAG-CCGGCTGG-GCTCA-TTT-TT----TG-GAAA---Aaa
gi|18 : gTTTTC----A---AAAA-----T-GA--GCT----C-AGCC-GG--C--TTTCGTt
gi|2 : c-A-ATAAACCATAAAAGCTC-----------TTACAAAGA-GATAACTAT--CCTCGTT--A--TAATGAGATAGTAA-CT------CGTTATAA-A-AACGAGTTAA--TTTTTTATATTTCGTCAA--C---AAAC-----T-GA--GCC----C-AGTC-GGC-C--TTTCGTAt
gi|2 : TACGAAAGGCCGACTGG-GCTCAGTTTGTT----GACGAAATATAAAAAATTAACTCGTTTTTATAACG-A-GT----------------TACTATCTCATTATAACGAGGATAGTTAT--C-TC-TTT-G--TAA-GAG--------CT--------TT-TAT-------GGTTTA-TTTTCTCTCATTGTTTTGCTAC---AAAAGCGGCT-GG--GCT----C-Attctctcattgttttgctacaaaagcggctgggctca
gi|3 : TACGAAAG-CCGGTTGG-GACCA-TCT-TT-----T-GAAA---AAATAA--------------------A-ATAA------------------AT-TCTTTATAACGA-GTTAG-TAT--C-TCGTT-----------------------A--T-CAGT-TA--T-AACGAGTTA------TTTTTCTCCTCTC----CA--AAAA-----T-GA--GCC----C-AGCC-GG--T--TTTCGTA
gi|4 : -TCCTTTTAAAAA-GA-AATCATAAC-TCGTT--A--TAATGAGA---TAATCTAAACT-CGTT-TAC-C-GAGGAGTTAA-TTTTCTTTTATTTCGTC----CAAAAAAA-----TGGA--GCC----CAAGTC-GG--CCTTTCCGTA
gi|5 : cataaaaagccGA-GATAACTAT--C-TCGTTT-AAATAATGAGA--TC---CTAA--CTCGTT-TAT-TTCACGAGTTAATTTTTTTTTTATTTCGTC----C---AAAAC----T-GAAGAAT----C-AGCCAAG--C--TTTCGT
gi|6 : aaAATTAT--C-TCGTCT-A--TAACGAG---ATAACCTAA--CTCG-T-TAG-T-AACGAGTTAATTTTTTTTTTATTTTTCC----A---AAAA-----T-GA--GCC----C-AGCC-GG--C--TTTCGT
gi|7 : TACGAAAG-CCGGCTGG-GCTCA-T--------------GA---TACTAAT----TCA---TTATAACGAA-ATA---------------TATAAC-TCCTTATAAC---GATAATTAT--A-TTG-TT-A--TAACGAGA--tagctgtgga
gi|8 : TT-A--TAACGAGAT-ATAT-TTAA----------ATCT-CACGAGTTGA-TTTTTTTTT-CTTCTTC----CAA-AAAA-----T-GA--GCCCAGGC-AGTC-GG--C--TTTCG
gi|9 : gATAATTA-CTCGA--TTATAACG-A-ATAA--CA----AACTCGT----------TATAACGA-GATACTTAA--C-TCGGTTAA--TAACGAG---ATAA-CTA
Alignments
lowQualScore : 1111111 88888888888888888888888888888888888888888 11 3333333333333333 1111 11 111 11 11
lowQualScore : 4 6666666 99999999999999999999999999999999999999999 66 5 0 11 66 4444444444444444 4 5 4444 22 88 66 333 99 4 66 9999 4 4 00 66
lowQualScore : . ....... ......................................... .. . . .. .. ................ . . .... .. .. .. ... .. . .. .... . . .. ..
lowQualScore : 0 8888888 77777777777777777777777777777777777777777 99 0 1 88 11 9999999999999999 9 7 9999 11 33 11 999 44 4 11 4444 4 4 66 11
consensus : TACGAAAGCCGGCTGG-GCTCATTTTT----GGGAAAAAATAAT--CTCG-TTATAACGA-ATAA---AAGCTC-T---ATTCNTTATAACGAGATAATTAT--C-TCGTTT-A--TAACGAGA--ATAA-CTAA--C-CGTT-TAT-T-AACGAGTTAA-TTTTTTTTTATTTCGTC--C---AAAA--T-GA--GCC----C-AGCC-GG--C--TTTCGTAC
Reference ( family-6069 ) : TACGAAAGCCGGCTGG-GCTCATTTTT----GGGAAAAAATAAT--CTCG-TTATAACGA-ATAA--CAAGCTC-TAT-ATTCNTTATAACGAGATAATTAT--C-TCGTTT-A--TAACGAGA--ATAA-CTAA--C-CGTT-TAT-T-AACGAGTTAA-TTTTTTTTTATTTTNTC--C---AAAA--T-GA--GCC----C-AGCC-GG--C--TTTCGTAC
gi|1 : TACGAA-GCCGGCTGG-GCTCAATTTT----GGGAAAAAATAAT--CTCG-TTATAACGACATAAACTAAGCTCGTATTATTCGTTATAACGAGATAATTAT--C-TCGTTT-A--TAACGAGA--ATAA-CTAA--C-CGTT-TAT-T-AACGAGTTAA-TTTTTTTTTATTTTTTC--C---AAAA--T-GA--GCC----C-AGCC-GGTCT--TTTCGTAC
gi|10 : -AACGAGTTA--TTTTTTTTTATTT---C--C---AAAAA-T-GA--GCC----C-AGCC-GG--C--TTTCGTAC
gi|11 : TACGAAAGCCGGCTGG-GCTCATTTTTTGGGGGGAAAAATTAA---CTCG-TTA
gi|12 : c-TTTTTCTTTATTTTATT--C---AAAAAAT-GA--GCC----C-AGCC-GG--C--TTTCGNAC
gi|13 : aACGAAAGCTGGCTTGTGCTTATTTTT----GG--AAAAATAAT--
gi|14 : TACGAAAGCCAGCTAA-GCTCATTTTT-----GAAAAAGATAAaaagaaaaa
gi|15 : TACGAACGCCGGCTGG-GCTCATTTTT----GG--AAAAATAAa
gi|16 : aACGAAAGCCGGCTGG-GCTCATTTTT----GTAAAAAAA
gi|17 : TACGAAAGCCGGCTGG-GCTCATTTTT----TGGAAAAaa
gi|18 : gACGAAAGCCGGCTGA-GCTCATTTTT----GAAAAt
gi|2 : cT----GAGAGAAAATAAA--CC-------------ATAA---AAGCTC-T---------TACAAAGAGATAACTAT--CCTCGTT--A--TAATGAGATAGTAA-CT------CGTTATAA-A-AACGAGTTAA--TTTTTTATATTTCGTCAAC---AAAC--T-GA--GCC----C-AGTC-GGC-C--TTTCGTAt
gi|3 : TACGAAAGCCGGTTGG-GACCATCTTT----TG-AAAAAATAA----------------A-ATAA--------------ATTCTTTATAACGAGTTAGT-AT--C-TCGTT-----------------------A--T-CAGT-TAT---AACGAGTTA------TTTTTCTCCTCTC--C---AAAAA-T-GA--GCC----C-AGCC-GG--T--TTTCGTAttgttttgctacaaaagcggctgggctca
gi|4 : -ATAA--AAAGCC--------TCCTTTTAAAAAGA-AATCATAAC-TCGTT--A--TAATGAGA---TAATCTAAACT-CGTT-TAC-C-GAGGAGTTAA-TTTTCTTTTATTTCGTC--CAAAAAAA--TGGA--GCC----CAAGTC-GG--CCTTTCCGTA
gi|5 : cGAGATAACTAT--C-TCGTTT-AAATAATGAGA--TC---CTAA--CTCGTT-TAT-TTCACGAGTTAATTTTTTTTTTATTTCGTC--C---AAAAC-T-GAAGAAT----C-AGCCAAG--C--TTTCGT
gi|6 : aaAATTAT--C-TCGTCT-A--TAACGAG---ATAACCTAA--CTCG-T-TAG-T-AACGAGTTAATTTTTTTTTTATTTTTCC--A---AAAA--T-GA--GCC----C-AGCC-GG--C--TTTCGT
gi|7 : TACGAAAGCCGGCTGG-GCTCAT------------GATACTAAT---TCA-TTATAACGA---AA--TA------TATAACTCCTTATAAC--GATAATTAT--A-TTG-TT-A--TAACGAGA--tagctgtgga
gi|8 : TT-A--TAACGAGAT-ATAT-TTAA----------ATCT-CACGAGTTGA-TTTTTTTTTCTTCT-TC--CAA-AAAA--T-GA--GCCCAGGC-AGTC-GG--C--TTTCG
gi|9 : gATAATTACTCGATTATAACGA-ATAA--CAAACTC---------GTTATAACGAGATACTTAA--C-TCGGTTAA--TAACGAG---ATAA-CTA
Alignments
lowQualScore : 1111111 8888888888888888888888888888888888888888888888 11 3333333333333333 1111 111111111 11
lowQualScore : 4 6666666 1111111111111111111111111111111111111111111111 0 66 5 0 11 66 4444444444444444 4 5 4444 77 4 55 888888888 33 4 55 8888 4 4 4 99 55
lowQualScore : . ....... .............................................. . .. . . .. .. ................ . . .... .. . .. ......... .. . .. .... . . . .. ..
lowQualScore : 0 8888888 3333333333333333333333333333333333333333333333 9 99 0 1 88 11 9999999999999999 9 7 9999 22 0 55 555555555 55 0 55 5555 0 0 0 55 55
consensus : TACGAAAGCCGGCTGG-GCTCATTTTT----GGGAAAAAATAAT--CTCG-TTATAACG-A-ATAA-A---AGCTC----TAT---TCNTTATAACGAGATAATTAT--C-TCGTTT-A--TAACGAGA--ATAA-CTAA--C-CGTT-TAN-T-AACGAGTTAA-TTTT-TTTTTATT--TCGTC--C---AAAA--T-GA--GCC----C-A-GCC-GG--C--TTTCGTAC
Reference ( family-6069 ) : TACGAAAGCCGGCTGG-GCTCATTTTT----GGGAAAAAATAAT--CTCG-TTATAACG-A-ATAA-A---AGCTC----TAT---TCNTTATAACGAGATAATTAT--C-TCGTTT-A--TAACGAGA--ATAA-CTAA--C-CGTT-TAT-T-AACGAGTTAA-TTTT-TTTTTATT--TCGTC--C---AAAA--T-GA--GCC----C-A-GCC-GG--C--TTTCGTAC
gi|1 : TACGAA-GCCGGCTGG-GCTCAATTTT----GGGAAAAAATAAT--CTCG-TTATAACG-ACATAA-ACTAAGCTCGTATTAT---TCGTTATAACGAGATAATTAT--C-TCGTTT-A--TAACGAGA--ATAA-CTAA--C-CGTT-TAT-T-AACGAGTTAA-TTTT-TTTTTATT--TTTTC--C---AAAA--T-GA--GCC----C-A-GCC-GGTCT--TTTCGTAC
gi|10 : -AACGAGTTA--TTTT-TTTTTATT--TC--C--A---AAAA--T-GA--GCC----C-A-GCC-GG--C--TTTCGTAC
gi|11 : TACGAAAGCCGGCTGG-GCTCATTTTTTGGGGGGAAAAATTAA---CTCG-TTA
gi|12 : c-TTTT-TCTTTATT--TTATT--C---AAAAAAT-GA--GCC----C-A-GCC-GG--C--TTTCGNAC
gi|13 : aACGAAAGCTGGCTTGTGCTTATTTTT----GG--AAAAATAAT--
gi|13 : -TTTT-TCTTTATTATTTTTC--C---AAAAA-T-AA--GCA----C-AAGCC-AG--C--TTTCGTaaagaaaaa
gi|14 : TACGAAAGCCAGCTAA-GCTCATTTTT-----GAAAAAGATAA
gi|15 : TACGAACGCCGGCTGG-GCTCATTTTT----GG--AAAAATAAa
gi|16 : aACGAAAGCCGGCTGG-GCTCATTTTT----GTAAAAAAA
gi|17 : TACGAAAGCCGGCTGG-GCTCATTTTT----TGGAAAAaa
gi|18 : gACGAAAGCCGGCTGA-GCTCATTTTT----GAAAAt
gi|2 : cT----GAGAGAAAATAAA--CC--------------ATAA-A---AGCTC----T---------TACAAAGAGATAACTAT--CCTCGTT--A--TAATGAGATAGTAA-CT------CGTTATAA-A-AACGAGTTAA--TTT-TTTATATT--TCGTCAAC---AAAC--T-GA--GCC----C-A-GTC-GGC-C--TTTCGTAt
gi|3 : TACGAAAGCCGGTTGG-GACCATCTTT-----TGAAAAAATAA-----------------A-ATAA---------------AT---TCTTTATAACGAGTTAG-TAT--C-TCGTT-----------------------A--T-CAGT-TA--T-AACGAGTTA---TTT-TTCTCCTC--TC--C--A---AAAA--T-GA--GCC----C-A-GCC-GG--T--TTTCGTAttgttttgctacaaaagcggctgggctca
gi|4 : AA-A---AGCC-----------TCCTTTTAAAAAGA-AATCATAAC-TCGTT--A--TAATGAGA---TAATCTAAACT-CGTT-TAC-C-GAGGAGTTAA-TTTT-CTTTTATT--TCGTC--CAAAAAAA--TGGA--GCC----CAA-GTC-GG--CCTTTCCGTA
gi|5 : cataGAGATAACTAT--C-TCGTTT-AAATAATGAGA--TC---CTAA--CTCGTT-TAT-TTCACGAGTTAA-TTTTTTTTTTATT--TCGTC--C---AAAAC-T-GAAGAAT----C-A-GCCAAG--C--TTTCGT
gi|6 : aaAATTAT--C-TCGTCT-A--TAACGAG---ATAACCTAA--CTCG-T-TAG-T-AACGAGTTAATTTTT-TTTTTATT--TT-TC--CA--AAAA--T-GA--GCC----C-A-GCC-GG--C--TTTCGT
gi|7 : TACGAAAGCCGGCTGG-GCTCAT------------GATACTAAT---TCA-TTATAACGAA-ATA---------------TATAACTCCTTATAAC--GATAATTAT--A-TTG-TT-A--TAACGAGA--tagctgtgga
gi|8 : TT-A--TAACGAGAT-ATAT-TTAA----------ATCT-CACGAGTTGA-TTTT-TTTTT-CT--TCTTC--CAA-AAAA--T-GA--GCCCAGGC-A-GTC-GG--C--TTTCG
gi|9 : gATAATTACTCGATTATAACG-A-ATAACA---AACTC------------GTTATAACGAGATACTTAA--C-TCGGTTAA--TAACGAG---ATAA-CTA
Alignments
lowQualScore : 1111111 8888888888888888888888888888888888888888888888 3333333333333333 111111111 11
lowQualScore : 4 6666666 1111111111111111111111111111111111111111111111 0 66 5 6 66 66 6666666666666666 777777 77 4 55 888888888 33 4 55 8888 4 4 4 99 55
lowQualScore : . ....... .............................................. . .. . . .. .. ................ ...... .. . .. ......... .. . .. .... . . . .. ..
lowQualScore : 0 8888888 3333333333333333333333333333333333333333333333 9 99 0 2 33 11 0000000000000000 999999 22 0 55 555555555 55 0 55 5555 0 0 0 55 55
consensus : TACGAAAGCCGGCTGG-GCTCATTTTT----GGGAAAAAATAAT--CTCG-TTATAACG-A-ATAA-A---AGCTC----TAT---TCNTTATAACGAGATAATTAT--C-TCGTTT-A--TAACGAGA--ATAA-CTAA--C-CGTT-TANT-AACGAGTTAA-TTTT-TTTTTATT--TCGTC--C---AAAA--T-GA--GCC----C-A-GCC-GG--C--TTTCGTAC
Reference ( family-6069 ) : TACGAAAGCCGGCTGG-GCTCATTTTT----GGGAAAAAATAAT--CTCG-TTATAACG-A-ATAA-A---AGCTC----TAT---TCNTTATAACGAGATAATTAT--C-TCGTTT-A--TAACGAGA--ATAA-CTAA--C-CGTT-TANT-AACGAGTTAA-TTTT-TTTTTATT--TCGTC--C---AAAA--T-GA--GCC----C-A-GCC-GG--C--TTTCGTAC
gi|1 : TACGAA-GCCGGCTGG-GCTCAATTTT----GGGAAAAAATAAT--CTCG-TTATAACG-ACATAA-ACTAAGCTCGTATTAT---TCGTTATAACGAGATAATTAT--C-TCGTTT-A--TAACGAGA--ATAA-CTAA--C-CGTT-TATT-AACGAGTTAA-TTTT-TTTTTATT--TTTTC--C---AAAA--T-GA--GCC----C-A-GCC-GGTCT--TTTCGTAC
gi|10 : -AACGAGTTA--TTTT-TTTTTATT--TC--C--A---AAAA--T-GA--GCC----C-A-GCC-GG--C--TTTCGTAC
gi|11 : TACGAAAGCCGGCTGG-GCTCATTTTTTGGGGGGAAAAATTAA---CTCG-TTA
gi|12 : c-TTTT-TCTTTATT--TTATT--C---AAAAAAT-GA--GCC----C-A-GCC-GG--C--TTTCGNAC
gi|13 : aACGAAAGCTGGCTTGTGCTTATTTTT----GG--AAAAATAAT--
gi|13 : -TTTT-TCTTTATTATTTTTC--C---AAAAA-T-AA--GCA----C-AAGCC-AG--C--TTTCGTaaagaaaaa
gi|14 : TACGAAAGCCAGCTAA-GCTCATTTTT-----GAAAAAGATAA
gi|15 : TACGAACGCCGGCTGG-GCTCATTTTT----GG--AAAAATAAa
gi|16 : aACGAAAGCCGGCTGG-GCTCATTTTT----GTAAAAAAA
gi|17 : TACGAAAGCCGGCTGG-GCTCATTTTT----TGGAAAAaa
gi|18 : gACGAAAGCCGGCTGA-GCTCATTTTT----GAAAAt
gi|2 : cT----GAGAGAAAATAAA--CC--------------ATAA-A---AGCTC----T---------TACAAAGAGATAACTAT--CCTCGTT--A--TAATGAGATAGTAA-CT------CGTTATAAA-AACGAGTTAA--TTT-TTTATATT--TCGTCAAC---AAAC--T-GA--GCC----C-A-GTC-GGC-C--TTTCGTAt
gi|3 : TACGAAAGCCGGTTGG-GACCATCTTT-----TGAAAAAATAA-----------------A-ATAA---------------AT---TCTTTATAACGAGTTAG-TAT--C-TCG-TT-A--T--------------------C-AGTT---AT-AACGAGTTA---TTT-TTCTCCTC--TC--C--A---AAAA--T-GA--GCC----C-A-GCC-GG--T--TTTCGTAttgttttgctacaaaagcggctgggctca
gi|4 : AA-A---AGCC-----------TCCTTTTAAAAAGA-AATCATAAC-TCGTT--A--TAATGAGA---TAATCTAAACT-CGTT-TACC-GAGGAGTTAA-TTTT-CTTTTATT--TCGTC--CAAAAAAA--TGGA--GCC----CAA-GTC-GG--CCTTTCCGTA
gi|5 : cataGAGATAACTAT--C-TCGTTT-AAATAATGAGA--TC---CTAA--CTCGTT-TATTTCACGAGTTAA-TTTTTTTTTTATT--TCGTC--C---AAAAC-T-GAAGAAT----C-A-GCCAAG--C--TTTCGT
gi|6 : aaAATTAT--C-TCGTCT-A--TAACGAG---ATAACCTAA--CTCG-T-TAGT-AACGAGTTAATTTTT-TTTTTATT--TT-TC--CA--AAAA--T-GA--GCC----C-A-GCC-GG--C--TTTCGT
gi|7 : TACGAAAGCCGGCTGG-GCTCAT------------GATACTAAT---TCA-TTATAACGAA-ATA---------------TATAACTCCTTATAAC--GATAATTAT--A-TTG-TT-A--TAACGAGA--tagctgtgga
gi|8 : TT-A--TAACGAGAT-ATAT-TTAA-----AT----CT-CACGAGTTGA-TTTT-TTTTT-CT--TCTTC--CAA-AAAA--T-GA--GCCCAGGC-A-GTC-GG--C--TTTCG
gi|9 : gATAATTACTCGATTATAACG-A-ATAACA---AACTC------------GTTATAACGAGATACTTAA--C-TCGGTTAA--TAACGAG---ATAA-CTA
Alignments
lowQualScore : 1111111 8888888888888888888888888888888888888888888888 3333333333333333 111111111 11
lowQualScore : 4 6666666 1111111111111111111111111111111111111111111111 0 66 5 6 66 66 6666666666666666 777777 77 4 55 888888888 33 4 55 8888 4 4 4 99 55
lowQualScore : . ....... .............................................. . .. . . .. .. ................ ...... .. . .. ......... .. . .. .... . . . .. ..
lowQualScore : 0 8888888 3333333333333333333333333333333333333333333333 9 99 0 2 33 11 0000000000000000 999999 22 0 55 555555555 55 0 55 5555 0 0 0 55 55
consensus : TACGAAAGCCGGCTGG-GCTCATTTTT----GGGAAAAAATAAT--CTCG-TTATAACG-A-ATAA-A---AGCTC----TAT---TCNTTATAACGAGATAATTAT--C-TCGTTT-A--TAACGAGA--ATAA-CTAA--C-CGTT-TANT-AACGAGTTAA-TTTT-TTTTTATT--TCGTC--C---AAAA--T-GA--GCC----C-A-GCC-GG--C--TTTCGTAC
Reference ( family-6069 ) : TACGAAAGCCGGCTGG-GCTCATTTTT----GGGAAAAAATAAT--CTCG-TTATAACG-A-ATAA-A---AGCTC----TAT---TCNTTATAACGAGATAATTAT--C-TCGTTT-A--TAACGAGA--ATAA-CTAA--C-CGTT-TANT-AACGAGTTAA-TTTT-TTTTTATT--TCGTC--C---AAAA--T-GA--GCC----C-A-GCC-GG--C--TTTCGTAC
gi|1 : TACGAA-GCCGGCTGG-GCTCAATTTT----GGGAAAAAATAAT--CTCG-TTATAACG-ACATAA-ACTAAGCTCGTATTAT---TCGTTATAACGAGATAATTAT--C-TCGTTT-A--TAACGAGA--ATAA-CTAA--C-CGTT-TATT-AACGAGTTAA-TTTT-TTTTTATT--TTTTC--C---AAAA--T-GA--GCC----C-A-GCC-GGTCT--TTTCGTAC
gi|10 : -AACGAGTTA--TTTT-TTTTTATT--TC--C--A---AAAA--T-GA--GCC----C-A-GCC-GG--C--TTTCGTAC
gi|11 : TACGAAAGCCGGCTGG-GCTCATTTTTTGGGGGGAAAAATTAA---CTCG-TTA
gi|12 : c-TTTT-TCTTTATT--TTATT--C---AAAAAAT-GA--GCC----C-A-GCC-GG--C--TTTCGNAC
gi|13 : aACGAAAGCTGGCTTGTGCTTATTTTT----GG--AAAAATAAT--
gi|13 : -TTTT-TCTTTATTATTTTTC--C---AAAAA-T-AA--GCA----C-AAGCC-AG--C--TTTCGTaaagaaaaa
gi|14 : TACGAAAGCCAGCTAA-GCTCATTTTT-----GAAAAAGATAA
gi|15 : TACGAACGCCGGCTGG-GCTCATTTTT----GG--AAAAATAAa
gi|16 : aACGAAAGCCGGCTGG-GCTCATTTTT----GTAAAAAAA
gi|17 : TACGAAAGCCGGCTGG-GCTCATTTTT----TGGAAAAaa
gi|18 : gACGAAAGCCGGCTGA-GCTCATTTTT----GAAAAt
gi|2 : cT----GAGAGAAAATAAA--CC--------------ATAA-A---AGCTC----T---------TACAAAGAGATAACTAT--CCTCGTT--A--TAATGAGATAGTAA-CT------CGTTATAAA-AACGAGTTAA--TTT-TTTATATT--TCGTCAAC---AAAC--T-GA--GCC----C-A-GTC-GGC-C--TTTCGTAt
gi|3 : TACGAAAGCCGGTTGG-GACCATCTTT-----TGAAAAAATAA-----------------A-ATAA---------------AT---TCTTTATAACGAGTTAG-TAT--C-TCG-TT-A--T--------------------C-AGTT---AT-AACGAGTTA---TTT-TTCTCCTC--TC--C--A---AAAA--T-GA--GCC----C-A-GCC-GG--T--TTTCGTAttgttttgctacaaaagcggctgggctca
gi|4 : AA-A---AGCC-----------TCCTTTTAAAAAGA-AATCATAAC-TCGTT--A--TAATGAGA---TAATCTAAACT-CGTT-TACC-GAGGAGTTAA-TTTT-CTTTTATT--TCGTC--CAAAAAAA--TGGA--GCC----CAA-GTC-GG--CCTTTCCGTA
gi|5 : cataGAGATAACTAT--C-TCGTTT-AAATAATGAGA--TC---CTAA--CTCGTT-TATTTCACGAGTTAA-TTTTTTTTTTATT--TCGTC--C---AAAAC-T-GAAGAAT----C-A-GCCAAG--C--TTTCGT
gi|6 : aaAATTAT--C-TCGTCT-A--TAACGAG---ATAACCTAA--CTCG-T-TAGT-AACGAGTTAATTTTT-TTTTTATT--TT-TC--CA--AAAA--T-GA--GCC----C-A-GCC-GG--C--TTTCGT
gi|7 : TACGAAAGCCGGCTGG-GCTCAT------------GATACTAAT---TCA-TTATAACGAA-ATA---------------TATAACTCCTTATAAC--GATAATTAT--A-TTG-TT-A--TAACGAGA--tagctgtgga
gi|8 : TT-A--TAACGAGAT-ATAT-TTAA-----AT----CT-CACGAGTTGA-TTTT-TTTTT-CT--TCTTC--CAA-AAAA--T-GA--GCCCAGGC-A-GTC-GG--C--TTTCG
gi|9 : gATAATTACTCGATTATAACG-A-ATAACA---AACTC------------GTTATAACGAGATACTTAA--C-TCGGTTAA--TAACGAG---ATAA-CTA
blockSeqs : T TGGGGGG TTACTCGATTATAACGAATAACAAACTCG AA C T TA AA ATAATCTAAACT ATAAA AT T AT GTCCAAA AA G AG CAGG A A A C CT
blockSeqs : . GTA TTCATTATAACGAAATATATAACTCC . . T T . ATAACCTAACT TATTT A . . GTCAAC A . . . . . . . .
blockSeqs : . TGG ACCATAAAAGCTCT . . T T . ATATATTTAA TACC A . . TTCCAA C . . . . . . . .
blockSeqs : . GAA AATAAATTCT . . T T . ATAGTAACT TAGT A . . ATTC . . . . . . . . .
blockSeqs : . GAG . . G T . ATCCTAACT AT A . . TTCC . . . . . . . . .
blockSeqs : . GG . . . T . C CT . . . GTCC . . . . . . . . .
blockSeqs : . GA . . . . . . . . TCCA . . . . . . . . .
blockSeqs : . GG . . . . CA . . . . . . . . .
blockSeqs : . TG . . CA . . . . . . . . .
blockSeqs : .
blockSeqCons : GG***** CCATAAAAAACTCT******************************** ATAATCTAACT***** TANT** **
originalCons : TACGAAAGCCGGCTGG-GCTCATTTTT----GGGAAAAAATAAT--CTCG-TTATAACG-A-ATAA-A---AGCTC----TAT---TCNTTATAACGAGATAATTAT--C-TCGTTT-A--TAACGAGA--ATAA-CTAA--C-CGTT-TANT-AACGAGTTAA-TTTT-TTTTTATT--TCGTC--C---AAAA--T-GA--GCC----C-A-GCC-GG--C--TTTCGTAC
finalCons : TACGAAAGCCGGCTGG-GCTCATTTTTGG-----AAAAAATAACCATAAAAAACTCT--------------------------------TTATAACGAGATAATTAT--C-TCGTTT-A--TAACGAGATAATCTAACT-----CGTTTANT--AACGAGTTAA-TTTT-TTTTTATT--TCGTC--C---AAAA--T-GA--GCC----C-A-GCC-GG--C--TTTCGTAC
Alignments
lowQualScore : 111111 5555555555555555555 3333333333 1 11111 1111 222222222 11
lowQualScore : 4 8 0 55 444444 6666666666666666666 99 4 8 2222222222 1 66 4 0 55 4 22222 4 1 0000 3 55 4 0 000000000 55 4 55 8888 4 4 99 55
lowQualScore : . . . .. ...... ................... .. . . .......... . .. . . .. . ..... . . .... . .. . . ......... .. . .. .... . . .. ..
lowQualScore : 4 9 8 55 444444 5555555555555555555 22 2 0 2222222222 4 11 4 6 55 0 66666 4 8 6666 6 44 0 7 000000000 00 0 55 5555 0 0 55 55
consensus : TACGAAAGCCGGCTGG-GCTCA-TTTTTGGAAA--AA------ATAA-CC-------------A--TAAA--AAAC-TC-------T--TTATAACGAGATAATTAT--C-TCGTTTA--TAACGAGA-TA-ATCTAA-CTCGTT-TANT-AACGAGTTAA-TTTT-TTTTTATTTCGTC--C---AAAA--T-GA--GCC----C-AGCC-GG--C--TTTCGTAC
Reference ( family-6069 ) : TACGAAAGCCGGCTGG-GCTCA-TTTTTGGAAA--AA------ATAA-CC-------------A--TAAA--AAAC-TC-------T--TTATAACGAGATAATTAT--C-TCGTTTA--TAACGAGA-TA-ATCTAA-CTCGTT-TANT-AACGAGTTAA-TTTT-TTTTTATTTCGTC--C---AAAA--T-GA--GCC----C-AGCC-GG--C--TTTCGTAC
gi|1 : TACGAA-GCCGGCTGG-GCTCAATTTTGGGAAA--AA------ATAA-TCTCGTTATAACGACA--TAAACTAAGC-TCGTATTATTCGTTATAACGAGATAATTAT--C-TCGTTTA--TAACGAGAATA-A-CTAA-C-CGTT-TATT-AACGAGTTAA-TTTT-TTTTTATTTTTTC--C---AAAA--T-GA--GCC----C-AGCC-GGTCT--TTTCGTAC
gi|10 : -AACGAGTTA--TTTT-TTTTTATTTC--C--A---AAAA--T-GA--GCC----C-AGCC-GG--C--TTTCGTAC
gi|11 : T-AACGAGTTAA-TTTT-TC-------CCCC--C---AAAAAAT-GA--GCC----C-AGCC-GG--C--TTTCGTA
gi|12 : c-TTTT-TCTTTATTTTATT--C---AAAAAAT-GA--GCC----C-AGCC-GG--C--TTTCGNAC
gi|13 : aACGAAAGCTGGCTTGTGCTTA-TTTTTGG-AA--AA------ATA-----------------A--TAAA--GAA
gi|14 : TACGAAAGCCAGCTAA-GCTCA-TTTTTGAAAA--AG------ATAA-aaa
gi|15 : TACGAACGCCGGCTGG-GCTCA-TTTTTGG-AA--AA------ATAA-a
gi|16 : aACGAAAGCCGGCTGG-GCTCA-TTTTTGTAAA--AA------AAAA-
gi|17 : TACGAAAGCCGGCTGG-GCTCATTTTTTGGAAA--A
gi|18 : gACGAAAGCCGGCTGA-GCTCA-TTTTTGAAAA--t
gi|2 : cGAGA--AA------ATAAACC-------------A--TAAA--AG-C-TC-------T--T-ACAAAGAGATAACTAT--CCTCGTT-A--TAATGAGA-TA-GT--AA-CTCGTTATAAA-AACGAGTTAA-TTTT-TTAT-ATTTCGTCAAC---AAAC--T-GA--GCC----C-AGTC-GGC-C--TTTCGTAt
gi|3 : TACGAAAGCCGGTTGG-GACCA-TCTTTTGAAA--AA------ATAA--------------------AAT--AAAT-TC-------T--TTATAACGAGTTAG-TAT--C-TCGTT----------------ATC-A-----GTT---AT-AACGAGTTA---TTT-TTCTCCTCTC--C--A---AAAA--T-GA--GCC----C-AGCC-GG--T--TTTCGTAtcattgttttgctacaaaagcggctgggctca
gi|4 : C-------------A--TAAA--AAGCCTC-------C--TTTTAAAAAGA-AATCATAAC-TCGTT-A--TAATGAGA-TA-ATCTAAACTCGTT-TACC-GAGGAGTTAA-TTTT-CTTTTATTTCGTC--CAAAAAAA--TGGA--GCC----CAAGTC-GG--CCTTTCCGTA
gi|5 : GAGATAACTAT--C-TCGTTTAAATAATGAGA-T---CCTAA-CTCGTT-TATTTCACGAGTTAA-TTTTTTTTTTATTTCGTC--C---AAAAC-T-GAAGAAT----C-AGCCAAG--C--TTTCGT
gi|6 : aaAATTAT--C-TCGTCTA--TAACGAGA-TA-ACCTAA-CTCG-T-TAGT-AACGAGTTAATTTTT-TTTTTATTTT-TC--CA--AAAA--T-GA--GCC----C-AGCC-GG--C--TTTCGT
gi|7 : TACGAAAGCCGGCTGG-GCTCA-T-----GATACTAATTCATTATAA-CG-------------AAATATA--TAAC-TC-------C--TTATAAC--GATAATTAT--A-TTG-TTA--TAACGAGA-tagctgtgga
gi|8 : TTA--TAACGAGA-TATATTTAA-ATC-------T-CACGAGTTGA-TTTT-TTTTT-CTTCTTC--CAA-AAAA--T-GA--GCCCAGGC-AGTC-GG--C--TTTCG
gi|9 : gATAATTA---C-TCGATTA--TAACGA-A-TA-A-CAAA-CTCGTT---AT-AACGAGATAC-TT
gi|9 : --TTATAACGA-ATAACAAA--C-TCGTT-A--TAACGAGA-TA-CT-TAA-CTCGGT-TAAT-AACGAGATAA-CTaactcggttaataacgagataacta