lowQualScore : 1111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 5555555555555 11111 999999999 2222 33333333333 44 1 2 1 1 1 22 4 55 11 2 111 11 1111 11 2 444444444 111 1 44444444444444 11 4444 11 11 1 1 1 1 11111 2222 111 2222222 2222222222222222222222 111111 11111111 2222222222222222222222222222222222 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111111111 2222222222222222222222222222222222222222 11 11 11111 222222222222222 22222 55555555555555555555555555555555555555555555555555555 111111111 111111111 3333333 111111 555555555555 11
lowQualScore : 6 3333333333333 99 6 8 0 88888 555555555 8 8 4444 11111111111 99 1 22 3 6 7 0 3 3 0 0 6 44 3 0 55 88 8 0 8 444 66 0 8 8 7777 00 6 222222222 2 000 8 8 8 5 8 3 77777777777777 11 66 6666 8 0 5 88 6 8 66 1 11 0 2 0 0 0 1 0 88888 8 999 5 5 6666 5 66 5 5 666 66 5 0 5 8888888 4 4 2222222222222222222222 444444 0 6 55555555 99 77 8 5555555555555555555555555555555555 1 33 3 33 5 5555 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 1 111111111 1 22 1 0000000000000000000000000000000000000000 33 2 44 444 00 2 11111 2 5 2 8888 555555555555555 44 0 00000 3 00000000000000000000000000000000000000000000000000000 999999999 444444444 4 0000000 000000 888888888888 55 1 4 0 11
lowQualScore : . ............. .. . . . ..... ......... . . .... ........... .. . .. . . . . . . . . . .. . . .. .. . . . ... .. . . . .... .. . ......... . ... . . . . . . .............. .. .. .... . . . .. . . .. . .. . . . . . . . ..... . ... . . .... . .. . . ... .. . . . ....... . . ...................... ...... . . ........ .. .. . .................................. . .. . .. . .... ............................................................................................................................................................................................................................................................................................................................................. . . ......... . .. . ........................................ .. . .. ... .. . ..... . . . .... ............... .. . ..... . ..................................................... ......... ......... . ....... ...... ............ .. . . . ..
lowQualScore : 0 0000000000000 44 0 0 8 88888 777777777 0 0 6666 77777777777 22 7 55 3 7 5 0 2 2 0 0 0 88 2 0 00 66 0 4 0 000 22 8 0 0 0000 88 4 666666666 8 000 0 0 0 0 0 8 00000000000000 00 44 6666 0 8 0 88 0 0 88 0 22 0 5 0 0 0 4 8 44444 0 777 7 0 8888 0 99 0 0 222 99 0 4 0 9999999 4 4 5555555555555555555555 444444 1 5 88888888 55 00 0 7777777777777777777777777777777777 5 99 5 44 0 3333 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 8 9 999999999 7 66 9 2222222222222222222222222222222222222222 77 7 77 777 33 5 22222 5 0 5 4444 333333333333333 22 2 55555 1 44444444444444444444444444444444444444444444444444444 222222222 555555555 0 0000000 333333 777777777777 66 1 4 1 00
consensus : NNNNNTACGATTTACGTATCACTT---TACCG--GAGACTT-AATTTTCAACATT-ATCACAA-ACGGTCGAGTGAA-A-T-A---GTTTGTTGAAATATTACATAAACGAT-CGTCGTACA-TATAG---GCC-----------TATA--GCGTACAAAACGGTC-GT-GCGAA-TAGCTGATCAAC-AGTGAT-TATAGTCATTA-CGATAT-GTACACAACCGTTGTGCAA-CACTA-CCGATTCAT--TCGAACTATAAAA-T-AAAAACT-GACGTAATA---AA-CCACT-CA-CAT----TTCA-TCGGCATTCAA-------A-TTTTCATTG-T-CGTGT-GC-GACCCACGGGTGCTT-CTTACCGA-TCTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATNGATCACGAT-GCTTTTGACAGCTC-ATAAAAGATGGCGTTCGTA-TATCGCGCCTAAATTGGTCTTCCCAGAATGCAATAGCCCG-AGCCCGAACCCGACGC-TT-ATAT-ATACATACGAA-C---CCG-ATCGTTTTA-TTGCCAG-AATG-T-TACC-A--AAAT-T-TG--TTGC--AG-CTA-GT--TG--GCAA-TA-TT---A-C---A-AA-C-T-----GTA------TGCTGATAGCTGAT-T-CAC-ATAGGAATG-TTG-C----AG----AA-A---AT-T---T---------TTCT-GGCAGTATTGC--CAG-A----A--T----GTTACC-AG-A----------A-GT-----TG--TT-GC--AGC--TA-----GT-N--GCAA---T-A-C--------------TAT--TG-TA-CT--T--CA--C-------------------T-----CT-T----TC-TGG-CA--GTAT--TG--C--CAGA---A--G--TNAC---C---A------G-A----------A-GT-----TGT---T-G-CAGC-----TA--G-----T---G-CA----AT-----A-T-T---T------C----AC---T------C--------------T-------T----TC-TGG-CA--------GTACTG--CCAG-A---A--------T--G-TT-ACC---A-G-A----A-GT-TG--TTGC-AGC--TA--GTG--GCA-AT-----A-TT-T-C---ACT-----TGTTCT-CA-AAA--TCTGGT----TTCTGGC-AA------CA------A-A---AA---------AT-GT-G----TTGC------TGCAAT------G--TTGC---------CGTAAT-ATTCGC-GGCGA--T---ATT-----T-GC-TG-CAACAA-TTTTACTTT--GGTAA
Reference ( gi|1 ) : GAAATTACGATTTATGTATCAATCGGACACTGTCGAGACTT-AATTTTCAACATT-ATCACAA-ACAGTCGAGTGAA-ATT-AATTGTTTGTTGAAATATTACATAAACGAT-CGTCGTACA-TATAT---GCC-----------TATA--GCGTACAAAACGGT--GT-GCGAA-TAGCTGATCAACCAGTGAT-TATAGTCATTA-CGATAT-GTACACAACCATTGTGCAAACACTAACCAATTCATATTCGAACTATAAAA-T-AAAAACT-GACGTAATA---AA-TCACT-CA-CAT----TTCG-TCGGCACTCAA-------AATTTCCATTG-T-CGTGT-GC-GACCCATGGGTGCTT-CTTACAAA-TCTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATTCATCATGAT-GCTTTTGACAGCTC-ATAAAAGATGGCGTTCATA-TATCGCGCCT-AATTGGTCTTCCCAGAATGCAATAGCCCG-AGCCCGAACCCGACGC-TT-ATAT-ATACATACGAA-C---CCG-ATCATTTTA-TTGCCAG-AATGTT-TACC-A--AAAT-T-TG--TTGC--AG-CTA-GT--TG--GCAA-TA-TT---A-C---A-AA-C-T-----GTA------TGCTGATAGCTGAT-T-CAC-ATAGGAATG-TTG-C----AG----AA-A---AT-T---T---------TTCT-GGCAGTATTGC--CAG-A----A--T----GTTACC-AG-A----------A-GT-----TG--TT-GC--AGC--TA-----GT-G--GCAA---T-A-C-----G--------TAT--TG-TA-CT--T--CA--C-------------------T-----CT-T----TC-TGG-CA--GTAT--TG--C--CAGA---A--G--TAAC---C---A------G-A----------A-GT-----TGT---T-G-CAGC-----TA--G-----T---G-CA----AT-----A-T-T---T------C----AC---T------C--------------T-------T----TC-TGG-CA--------GTATTG--CCAG-A---A--------T--G-TT-ACC---A-G-A----A-GT-TG--TTGC-AGC--TA--GTG--GCA-AT-----A-TT-T-C---ACT-----TGTTCT-CA-AAA--TCTGGT----CTCTGGC-AA------CA------A-A---AA---------AT-GT-G----TTGC-----TTGCAAT------G--TTGC---------CGTAAT-ATTCGCGGGCGA--T---ATT-----TGGCGTG-CAACAA-TTTTACTTT--GGTAA
gi|2 : TACAATTTACGTATCACTT---TACCG--GAGACTA-AATTTTCAAC-TT-ATCA-AA-GCGGTCGAGTGAA---T-A---GTTTGTTGAAATATTACATAAACGACACGTCGTACA-TATAG---GCC-----------TATA--GCGTACAAAACGGTC-GTCACGA--TAGTTGATTAAC-AGTGAT-TA--GTCATTAACGATATCGTACACAACAGTTGTGCAA-CACTA-CCAATTCAT--TCGAACTATAAAAATGAAAAACT-GACGTAATA---AAACCACT-CA-CAT----TTCA-TCCGCA-TCAA-------A-TTTTCATTGGT-CGTGTCGC-GACCCACGGGTGCTTTCTTACCGA-TCTTCTCTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATG-ATCGCGAT-GCTTTTGACAGCTCCATGAAACATGGCGTTCGTAATATCGCGCCT-AATTGGTCTTCCCAGAATGCAATAGCCCACAG-CCGAACCCGACGCTTT-ATAT-ATACATA-GAA-C---CCGAATCATTTTATTTGCCAG-AATG-T-TACCAA--AAAT-T-TG---TGC--AG-CT--GT--C----CAA-TA-TT---A-C---A-AA-CGT-----GTA------TGCTGATAGCTGAA-T-CAC-ATAGGAG-G-TTG-CA---AG----AA-A---AT-T---T---------TTCT--GCAGTATTGC--CAG-A----A--T----ATTACC-AG-A----------A-GT-----TG--TT-GC--AGC---A-----GT----GCA-------------------------------TA-TT--T--CA--C-------------------T-----CT-T----TC-T-G-CA--GTAT--TG--C--CAGA---AT-G--TTACCA-C---A------G-A----------A-GT-----TGT---T-G-CAGC-----TA--G-----TG--G-CA----AT-----A-T-T---T------C----AC---T------C--------------T-------T----TC-TGG-CA--------GTATTG--CCAG-A---A--------T--G-TT-ACC---ACG-A----A-GT-TG--TTGC-AGC--TA--GTG--GCA-AT-----A-TT-T-C---ACT-----TG-TCT-CA-AAA--TCTGGT----TTCT-GC-AA------CA------A-A---CA---------AT-GTGG----TTGC------TGCAAT------G--TTGC---------CGTAAT-A-TCGC-GGCGA--TCTAATC-----TGCACTGCCAACAA-TTTTACTTT--GGTAA
gi|12 : tataACGATTTACGTATCA--------CCG--GAGACTT-AATTTCCAACATT-ATCAC-A-ACAGTCGAGTGAA-gg
gi|4 : ttaGAGACTT-AATTTTCAACATT-ATCA-AA-ACAGTCGAGTGAA---T-A---GTTTGTTGAAATATTACATAAACGAT-CGTCGTACA-TATAG---GCC-----------TATA--GCGTACAAAACGGTC-GT-GCAAA-TAGCTGATCAAC-AGTGAT-TATAGTC-TTA-CGATAT-GTACACAACCGTTGTGCAA-CACTA-CCGATTCAT--TCGAACTATAAA--T-AAAA-CT-GACGTAATA---AA-CCACT-CA-CAT----TTCA-TCGGCA-TCAA-------A-TTTTCATTG-T-CGTGT-GC-GACCCATGGGTG-TT-CTTACCAATTTTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGA-TGATCATGAT-GCTTTTGACAGCTC-ATAAAAGATGGCGTTCGTA-TATCGCGCCTAAATTGGTCTTCCCAGAATGCAATAGCCCG-AGCCCGAA-CCGACGC-TT-ATAT-ATACTTACG-A-C---CCG-ATCGGTTTA-TTGCCAG-AATG-T-TACC-A--AAAT-T-TG--TTGC--AG-CTA-G---TG--GCAA-TA-TT---A-C---A-AA-C-T-----GTA------TGCTGATAGCTGA--T-CAC-ATAGG-ATG-TTGCC----AT----AA-A---TT-T---T---------TTCT-GGCAGTATTGC--CAG-A----A--T----GTTACC-AG-A----------A-GT-----TG--TT-GC--AGC--TA-----GT-G--GCAA------------------------------TA-CT--T--CA--C-------------------T-----CT-C----TC-TGG-CA--GTAT--TG--C--CAGA---AT-G--TTAC---C---A------G-A----------A-GT-----TGT---T-G-CAGC-----TA--G-----TG--G-CA----AT-----ATT-T---T------C----AC---T------TGTCTCAAAATCTGGT-------C----TC-TGG-CAACAAAAATGTGTTG--CTGC-A---A--------T--G-TT-GCC---G-T-A----A----TA--TCGC-GGCGATA--TTGCTGCA-ACA----A-TT-T-T---ACT-----Ttagtt
gi|10 : catatcaccaGAGACTA-AATGTTCAACTTTTATCACATTACGGCTGTGTGAATACTGAATAGTCTGTTGAAATATTACATACACGAC-CGTCGTGCATTATATATAGACAGTTGAAACATTATATTGCGTACAAGACGGTC-AT-GCAAA-TAGCTGTTCGACtgg
gi|3 : taccgAGACTTTAATTTTCAACATT-A-CACAA--CAGTCGAGTGAA-A-------GTTTGTTGAAATATTACATAAACGAT-CGTCGTACA-TATAG---GCC-----------TATA--GCGTACAAA-CGGTCCGTAGCGAAATAGCTGATCAAC-AGTGACGTATAGTCATTA-CGATAT-GTACACAACCGTTGTGCCAAC--TA-CCGATTCAT--TCGAACTATAAAA-T-AAAA-CT-GACGTAATA---AA-CCACT-CA-CAT----TTCGATCGGCATCCAA-------AATTTC-ATTG-TTCGTGT-GGAGACCCATGGGTGCTT-CTTGCCAA-TCTTCTT-ATCTGT--------------AGAAAC--CGTGG-ACTGTTT-ACGATG-ATCATGAT-GCTTTTGACAGCTC-ATAAAAGATGGCGTTCGTA-TATCGCGCCTAAATTGGTCTTCCCAGAAT-CAATAGCCCG-AGCCCGAACCCGACGC-TTAATATAATACTTACGAA-TCGACCG-ATCG-GTTA-TTGCCAG-AATG-T-TACC-ATCAAAT-T-GT--TTGCCAAG-CTA-GT--GG--GC-A-TA-TT---ATC---AGAA-C-T-----GTA------TGCTGATAGCTGAT-C-CAC-ATAGG-ATGTTTG-C----AT----AATA---AA-T---T---------TTCTGGGCAGTA--GC--CAGAA----A--T----GTTACCTAG-A----------A-GT-----TG--TT-CC--AGC--TA-----GT-T--G------T-G-C-----A--------TAT--T------T--T--CA--A-------------------------CT-T----TCGTGG--A--GTATTGTG--C--CAAAT--G--G--TTAC---CGTAA------GTA----------A-GT-----T-T---T-GCCAGC-----TA--T-----G---G-C-----AT-----A-T-T---T------C-----C---T------T--------------G-------T----TC-Ta
gi|9 : gattacatatcaccgcCAGTCGAGTGAA---T-A---GTTTGTTGAAATTTTGCATAAACGAT-CGTCGTACA-TATAA---GCC-----------TATA--GCGTACAAAACGGTC-GT-GCGAA-TAGCTGATCAA-CAGTGAT-TATAGTCATTG-CGATAT-GTAcaaaatctcgtgcctctcgctggcacaaaattgtgttgctgcgatattattgttgttattttcttcgtaatatcgcgggcgatacttgccgcaaaaatttttacttttggataa
gi|15 : cttcttcttcttccggttacggtacatgacactataaatgtgtattttcgtac-----------TATT--GCGTACACCGCGGTC-GT-GCGAA-TAGCTGTTCAA
gi|5 : ctataACACAACCGTTGTGCA--CACTA-CCAATTCAT--TCGAACTATAAA--T-AAAA-CT-GACGTAATA---AA-CCACT-CA-CAT----TTCA-TCGGCA-TCAA-------A-TTTTCATTG-T-CGTGT-GC-GACCCATGGGTGCTT-CTTACCGA-TCTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGA-TGATCATGAT-GCTTTTGACAG-TC-ATAAAAGATGGCGTTCGTA-TATCGCGCCT-ATTTGGTCTTCCCAGAATGCAATAGCCC--AG-CCGAACCCGACGC-TT-ATAT-ATACATACGAA-C---CCG-ATAATTTTA-TTGCCAG-AATG-T-TACC-A--AAAT-T-TG--TTGC--AG-CTA-G---TG--GCAA-TA-TT---A-C---A-AA-C-T-----GTA------TGCTGATAGCTGA--T-CAC-ATAGG-ATG-TTGCC----AG----AA-A---TT-T---T---------TTCT-GGCAGTATTGC--CAG-A----A--T----GTTACC-AG-A----------A-GT-----TG--TT-GC--AG---TA-----GT-G--GCAA---T-----------------------------CT--T--CA--C-------------------T-----CT-T----TC-TGG-CA--GTAT--TG--C--CAGA---AT-G--TTAC---C---A------G-A----------A-GT-----T-T---T-G-CAGC-----TA--G-----TG--G-CA----AT------------------------------------------------------------------------------------ATTG--CCAG-A---A--------T--G-TTAACA---A-G-A----A-GT-TG--TTGC-AGC--TA--GTG--GCA-AT-----A-TT-T-C---ACT-----TG-TCT-CA-AAA--TCTGGT----CTCTGGC-AA------T---------A---AA---------AT-GT-T----TTGC------TGCAAT------G--TTGC---------CGCAAT-A--CGC-GGCGA--T---ATT-------GC-TG-CAACAA-TTTTACgag
gi|7 : A-T-AAAAATTTGATGTAATACAGAA-AC-CTGCAACATGTTTTTCA-TCAGCATTCAACTCCCTCATTCTTCGCTA-C-AGTGA-GC-TTTTCACGGGTGCTT-CTTATCGA-TCTTCTCCATCTGTGGACTCAATAGTCAGGAAACGGCGTGGGCGTGTT----G----GCCACGATAGCTTT--ATAGATC---CAAAGATGGCATT
gi|16 : tacgaaatataaaaaggcactactaccaccaagttgacataggaattttctaatgcacagatatttttaggagtccaaataatcctttggcactA-TATCGCGCC-------GTCTTCCCAGAATGCAATAGCCTG-AGCCCGAtgtttttgccgctattctctacccaattcgcatagtgtagaacccg
gi|6 : gCATACGAAAT---CTG-AT------A-TTACCAC-AATATT--GCC-G--CAAC-A-TGCTTTGC--AG-C-A-GTACTGCCGCAACTAGTT---T-C---A-AA---------ATA------TGCT--TTGC-------------AGCAATA-TTG-C----TG----CA-AC--AC-T---T---------CTCT-GGCAATATTGCCGCAA-ATCTAA--T-----TTAC--AT-A----------A-AT-----T---------------TA-------------AA---T-A-C-----GAAATCTGATAT--T---A-CC--G--CA--A-------------------T-----AT-T----GC-TG--CAATGTAT--TG--C--CAGA---A---------------------------------------------TGT---T-A-C------------------T---A-CA----AT-----A-T-T---------------GC---T---------------------------------------G-CA--------ATAATG--CCAG-AAG-A--------T--A-TC-GCC---A-G-A----A-G
gi|5 : gttgcattgcaagaatactaggtaccacataatagttggaaatgcgttgcagtaatattgccgcaaatcctttctggcaatattgccgcaaatctaattagCATTTTA-TTGCCAG-AG------ACC-A--GATT-T-TG--------AGACAA-GT------GAAA-TA-TTGCCA-C---T-AG-C-T-----GCAACAACTTCTTGTTAAC--AT-T-C----TGGCAATA-TTG-CCACTAGCTGCAA-A---AC-T---TCTGGTAACATTCT-GGCAATACTGC--CAG-A----AAGA----GT------G-A----------A-G-------A--TT-GC--CAC--TA-----CT----GCAA---CAA-C-----T--------TCT--GG-TA-A------CA-------------------------------T----TC-TGG-CA--ATAC--TG--C--CAGA---A--ggctgtatttcaataaggg
gi|6 : acacaaccgttgtgcacactaccaattcattcgaactataaataaaactgacgtaataaaccactcacatttcatcggcatcaaattttcattgtcgtgtgcgacccatgggtgcttcttaccgatcttctttatctgtagaaaccgtgggactgttttacgatgatcatgatgcttttgacagtcataaaagatggcgttcgtatatcgcgcctatttggtcttcccagaatgcaatagcccagccgaacccgacgcttatatatacatacgaacccgataattttattgccagaatgttaccaaaatttgttgcagctagtggcaatattacaaactgtatgctgatagctgatcacataggatgttgccagaaattttTTA-TTGC-AGCAATATTGTAGT-A--ACAT-TCTG----GC--AA--TACAT--TGCAGCAA-TA-TT---G-C---G------------GTA-----------ATATCAGAT-TTCGT-ATTTAAAT--TTA-T-----G----TA-A---AT-TAGAT---------TTGC-GGCAATATTGC--CAG---------------------AG-A----------A-G------TG--TT-GC--AGCAATA-----TT-GCTGCAA---A-G-C-----A--------TAT--T------T--TGAAA--C-------------------T-----AG-T----TG-CGG-CA--GTAC--TG--CTGCA-A---A--G--CA--------------------------------------TGT---T-G-CGGCAA---TATTG-----TG--G-TA----ATATCAGA-T-T---T------CGTATGC---TAATTAGA--------------T-------T----TG-CGG-CA--------ATATTG--CCAG-A---A--------ttttgctgcaatgttgccgcaatacgcggcgatattgctgcaacaattttac
gi|8 : gttgcattgcaagaatactaggtaccacataatagttggaaatgcgttgcagtaatattgccgcaaatcctCCAG-AATG---TACC-A--GAACGT-TG--TC-C--A--CTA-GT------GCAA-TA-TT---tgccagaagatatcgccagaagggctgtatttcaataaggg
gi|6 : ttgtgacagcctagttgcaattatcttcactctttcttgcatact--TG--GCAA-TA-TT---G-CCGCA-AATC-TAATTAGCA------TAC-GAAATCTGATAT-TACCACA---ATA-TTG-C----CG----CA-AC--ATGC---T---------TTGC-AGCAGTACTGC--CGC-A----A--CTA--GTT-TC-AA-A----------A-TA-----TGCTTT-GC--AGC-----------------AA---T-A-T--------------TGC--TG-CA-A------CA--C-------------------T------T-C----TC-TGG-CA--ATAT--TG--C--CGCA---A--ATCTAATTTAC---A------T-A----------A-AT-----T-TAAAT-A-CGA-------A--A-----T---C-TG----AT-----A-T-TACCG------C----AA---T------A--------------T-------T----GC-T-G-CAAT------GTATTG--CCAG-A---A--------T--G-TT-ACT---A-C-A----ATAT-TG--CTGC-AA---TA--ATG--CCA-ttcacttgtctcaaaatctggctctgccaaacactaaaatgtgttgctgcaatgtttccgtaattatcctcgcgaatgcgcaaaacaattttactttggttaagt
gi|4 : gttgcattgcaagaatactaggtaccacataatagttggaaatgcgttgcagtaatattgccgcaaatcctttcAACA-TTG-C----AG----CA-ACACAT-T---T---------TT---------GTTGC--CAG-A----G----------ACC-AG-ATTTTGAGACAA-GTGAAAATA--TT-GC--CAC--TA-----GC-T--GCAA---C-AAC-----T--------TCT--GG-TA-A------CA-------------------------------T----TC-TGG-CA--ATAC--TG--C--CAGAGAGA--G--T-----------------G-A----------A-GT------AT---T-G-CCAC-----TA--GC----T---G-CA----AC-----A-------------------AC---TT-----C--------------TGGTAACAT----TC-TGG-CA--------ATACTG--CCAG-A---A--------gaagatatcgccagaagggctgtatttcaataaggg
gi|5 : catatcaccagagacttaattttcaacattatcaaaacagtcgagtgaatagtttgttgaaatattacataaacgatcgtcgtacatataggcctatagcgtacaaaacggtcgtgcaaatagctgatcaacagtgattatagtcttacgatatgtacacaaccgttgtgcaacactaccgattcattcgaactataaataaaactgacgtaataaaccactcacatttcatcggcatcaaattttcattgtcgtgtgcgacccatgggtgttcttaccaatttttctttatctgtagaaaccgtgggactgttttacgatgatcatgatgcttttgacagctcataaaagatggcgttcgtatatcgcgcctaaattggtcttcccagaatgcaatagcccgagcccgaaccgacgcttatatatacttacgacccgatcggtttattgccagaatgttaccaaaatttgttgcagctagtggcaatattacaaactgtatgctgatagctgatcacataggatgttgccataaattttAACA-TTG-C----AGC---AA-A---AC-A---T---------TT--------TATTGC--CAG-A----G----------ACC-AG-ATTTTGAGACAA-GTGAAA-TA--TT-GC--CAC--TA-----GC-T--GCAA---C-AAC-----T--------TCT--TG-T------T--AA--C-------------------A--------T----TC-TGG-CA--ATAT--TG--C--C------A--C--TAGCTG-C---A------A-A----------A-CT-----T------------C-----TG--G-----T------A----AC-----A------------------------------------------------------T----TC-TGG-CA--------ATACTG--CCAG-A---A--------gccgtaatatcgcggcgatattgctgcaacaattttactttgg
gi|8 : acacaaccgttgtgcacactaccaattcattcgaactataaataaaactgacgtaataaaccactcacatttcatcggcatcaaattttcattgtcgtgtgcgacccatgggtgcttcttaccgatcttctttatctgtagaaaccgtgggactgttttacgatgatcatgatgcttttgacagtcataaaagatggcgttcgtatatcgcgcctatttggtcttcccagaatgcaatagcccagccgaacccgacgcttatatatacatacgaacccgataattttattgccagaatgttaccaaaatttgttgcagctagtggcaatattacaaactgtatgctgatagctgatcacataggatgttgccagaaattttttctggcagtattgccagaatgttaccagaagttgttgcagtagtggcaatcttcactctT-C---T---------TTCT-TGCA-TACT-C--CAG-A----A--T----G-TACC-AG-A----------ACGT-----TG--TC--C--A-C--TA-----GT----GCAA----------------------TAT--T------T--T--CA--CTTG----------------T-----CT-CAAAATC-TGG-C----T-C--TG--C--CAAA----------CAC---T---A------A-A----------A-TG-----TGT---T-G-C------------------T---G-CA----AT-----G-T-T---T------C----gccgcaatacgcggcgatattgctgcaacaattttac
gi|6 : ttgtgacagcctagttgcaattatcttcac-T---C---------TTCT-GGCATTATTGC---AGCA----A--T----ATT--------------------GT-----AG--TA-AC--A----TT-----CT-G--GCAA---T-A-C---------------AT--TG-CA---------------------------------------------------G-CA--ATAT--TG--C---------G--G--TAATAT-C---A------G-A-------------T-----T-T---C-G-TATT-----TA--AATTTAT---G-TA----A------A-T-T---A------G----A--------------------------T-------T----TG-CGG-CA--------ATATTG--CCAG----------------------------A-G-A----A-G--TG--TTGC-AGCAATA--TTGCTGCA-A------A----------GCA-----TATTTT-GA-AA----CTAGT----TGC-GGC-AG------TACTGCTGC-A---AA---------GC-AT-G----TTGC------GGCAAT------A--TTGT---------GGTAAT-ATcgtaattatcctcgcgaatgcgcaaaacaattttactttggttaagt
gi|2 : gttgcattgcaagaatactaggtaccacataatagttggaaatgcgttgcagtaatattgccgcaaatcctttctggcaatattgccgcaaatctaattagcatacgaaatctg---------TTCT-GGCAATACTGC--CAG-A----A--A----G--AGT-GA-A----------A--------TA--TT-GC--CAC--TA-----GC-T--GCAA---C-A-------------------------A-CT--T--CT--G-------------------TGGTAACA-T----TC-TGG-CA--ATAC--TG-----CAGA---A--A--GAGT--------------G-A----------A-AT-------A---T-G-CA-C-----TG--C-----T---G-CA----AC-----A-------------------ACT--T------C--------------TGGTAATAT----TC-TGG-CA--------ATACTG---CAG-A---A--------tatcgccagaagggctgtatttcaataaggg
gi|6 : tatatacaatttacgtatcactttaccggagactaaattttcaacttatcaaagcggtcgagtgaatagtttgttgaaatattacataaacgacacgtcgtacatataggcctatagcgtacaaaacggtcgtcacgatagttgattaacagtgattagtcattaacgatatcgtacacaacagttgtgcaacactaccaattcattcgaactataaaaatgaaaaactgacgtaataaaaccactcacatttcatccgcatcaaattttcattggtcgtgtcgcgacccacgggtgctttcttaccgatcttctctatctgtagaaaccgtgggactgttttacgatgatcgcgatgcttttgacagctccatgaaacatggcgttcgtaatatcgcgcctaattggtcttcccagaatgcaatagcccacagccgaacccgacgctttatatatacatagaacccgaatcattttatttgccagaatgttaccaaaaatttgtgcagctgtccaatattacaaacgtgtatgctgatagctgaatcacataggaggttgcaagaaaatttGCATTGC--AAG-A----A--TACTAGGTACC-AC-AT---------A-AT-----AG--TT-GG--AAA--TGC----GT-T--GCAG---T-A-------A--------TAT--TG----CC--G--CAAAT-------------------C-----CT-T----TC-TGG-CA--ATAT--TG--C--CGCA---A--ATCTAAT---T---AGCATACG-A----------A-AT-------C---T-G-ATAT-----TA--C-----C---A-CA----AT-----A-T-T---GCCGCAAC----AT---G------C--------------T-------T----TG-CAG-CA--------GTACTG--CCGC-A---A--------CTAG-TT--TC---A-A-A----A-TA-TGCTTTGC-AGCAATA--TTGCTGCA-AC-----A-CT-T-C---TCTGGCAATATTGC-CGCAAA--TCTAAT----TT---AC--A------TA------A-ATTTAA---------AT-AC-G----AAAT-----CTG--AT------A--TTAC---------CGCAAT-ATT-GC-TGCAA--T---GTA-----T----TG-CCAGAA-TGTTACTtgttaccacgaagttgttgcagctagtggcaatatttcacttgtctcaaaatctggtttctgcaacaaacaatgtggttgctgcaatgttgccgtaatatcgcggcgatctaatctgcactgccaacaattttactttggtaagg
gi|4 : gttTATTGC--CAG-A----A--T----GTTACC-AA-A----------A-TT-----TG--TT-GC--AGC--TA-----GT-G--GCAATATT-A-CAAACTG--------TATGCTGATAGCTGAT--CA--CATAGGATGTTGCCATAAATT-----TT-T----TC-TGG-CA--GTAT--TG--C--CAGA---AT-G--TTAC---C---A------G-A----------A-GT-----TGT---T-G-CAGC-----TA--G-----T---GGCA----AT-----A-C-T---T------C----AC---T------C--------------T-------C----TC-TGG-CA--------GTATTG--CCAG-A---A--------T--G-TT-ACC---A-G-A----A-GT-TG--TTGC-AGC--TA--GTG--GCA-AT-----ATTT-T-C---ACT-----TG-TCT-CA-AAA--TCTGGT----CTCTGGC-AA------C-------A-A---AA---------AT-GT-G----TTGC------TGCAAT------G--TTGC---------CGTAAT-A-TCGC-GGCGA--T---ATT-------GC-TG-CAACAA-TTTTACTTT--GGacaatattgctgcaataatgccagaagatatcgccagaagggctgtatttcaataaggg
gi|3 : catatcaccagagacttaattttcaacattatcaaaacagtcgagtgaatagtttgttgaaatattacataaacgatcgtcgtacatataggcctatagcgtacaaaacggtcgtgcaaatagctgatcaacagtgattatagtcttacgatatgtacacaaccgttgtgcaacactaccgattcattcgaactataaataaaactgacgtaataaaccactcacatttcatcggcatcaaattttcattgtcgtgtgcgacccatgggtgttcttaccaatttttctttatctgtagaaaccgtgggactgttttacgatgatcatgatgcttttgacagctcataaaagatggcgttcgtatatcgcgcctaaattggtcttcccagaatgcaatagcccgagcccgaaccgacgcttatatatacttacgacccgatcggttTATTGC--CAG-A----A--T----GTTACC-ATCA----------A-AT-----TG--TTTGCCAAGC--TA-----GTGG--GC-A---T-A-T--------------TAT--CA-GA---------A--C-------------------T-----GTAT----GC-TGA-TA--GC----TGATC--CA------------------C---A------T-A----------G-GA-----TGT---TTG-CA-------TA--A-----T---A--A----AT----------------------------------------------------T-------T----TC-TGGGCA--------GTA--G--CCAG-A---AA-------T--G-TT-ACCT--A-G-A----A-GT-TG--TTCC-AGC--TA--GTT--GTGCAT-----A-TT-T-TCA-ACT-----T
gi|4 : gattacatatcaccgcagactttaattttcaacattacacaacagtcgagtgaaagtttgttgaaatattacataaacgatcgtcgtacatataggcctatagcgtacaaacggtccgtagcgaaatagctgatcaacagtgacgtatagtcattacgatatgtacacaaccgttgtgccaactaccgattcattcgaactataaaataaaactgacgtaataaaccactcacatttcgatcggcatccaaaatttcattgttcgtgtggagacccatgggtgcttcttgccaatcttcttatctgtagaaaccgtggactgtttacgatgatcatgatgcttttgacagctcataaaagatggcgttcgtatatcgcgcctaaattggtcttcccagaatcaatagcccgagcccgaacccgacgcttaatataatacttacgaatcgaccgatcggt-A----------A-AT-----TG--TT-GC--AGCAATATCGCCGC-G--ATAT---T-A-C-----GGCAA----CAT--TG-CAGCA--A--CA--C-------------------A-----TT-T----T-----------TGT--TG--C--CAGA---G-------AC---C---A------G-ATTTTGAGACAA-GTGAAAATAT---T-G-CCAC-----TA--GC----T---G-CA----AC-----A-------------------AC---TT-----C--------------TGGTAACAT----TC-TGG-CA--------ATACTG--CCAG-AGAGA-----------G-T----------G-A----A-G--TA--TTGC-CAC--TA--GCT--GCA-AC-----A----------ACT--------------------TCTGGTAACATTCTGGC-AA------TA------tcgtggagtattgtgccaaatggttaccgtaagtaagttttgccagctatggcatatttccttgttctcaaaatctcgtgcctctcgctggcacaaaattgtgttgctgcgatattattgttgttattttcttcgtaatatcgcgggcgatacttgccgcaaaaatttttacttttggataa
gi|8 : catatcaccagagacttaattttcaacattatcaaaacagtcgagtgaatagtttgttgaaatattacataaacgatcgtcgtacatataggcctatagcgtacaaaacggtcgtgcaaatagctgatcaacagtgattatagtcttacgatatgtacacaaccgttgtgcaacactaccgattcattcgaactataaataaaactgacgtaataaaccactcacatttcatcggcatcaaattttcattgtcgtgtgcgacccatgggtgttcttaccaatttttctttatctgtagaaaccgtgggactgttttacgatgatcatgatgcttttgacagctcataaaagatggcgttcgtatatcgcgcctaaattggtcttcccagaatgcaatagcccgagcccgaaccgacgcttatatatacttacgacccgatcggtttattgccagaatgttaccaaaatttgttgcagctagtggcaatattacaaactgtatgctgatagctgatcacataggatgttgccataaattttttctggcagT-----TG--TG-AC--AGCC-TA-----GT-T--GCAA---T------------------TAT--------CT--T--CA--C-------------------T-----CT-T----TC-TTG-CA---TAC--T---C--CAGA---AT-G--T-AC---C---A------G-A----------ACGT-----TGT---C---CA-C-----TA--G-----T---G-CA----AT-----ATT-T---T------C----ACTTGT------C--------------T-------CAAAATC-TGG-C----------T-CTG--CCAA-A------------------C-ACT---A-A-A----A-TG-TG--TT----GC--T--------GCA-AT-----G-TT-T-CCGTAAT-----TATCCT-Ctactttgg
gi|5 : -----TA--TT-GC--CAC--TA-----GC-T--GCAA---A-A-C-----T--------TCT--GG-TA-A------CA-------------------------------T----TC-TGG-CA--ATAC--TG--C--CAGA---A--A--GAGT--------------G-A----------A-G-------AT---T-G-CCAC-----TA--C-----T---G-CA----AC-----A-------------------AC---TT-----C--------------TGGTAACAT----TC-TGG-CA--------ATACTG--CCAG-A---A--------gcgaatgcgcaaaacaattttactttggttaagt
gi|3 : acacaaccgttgtgcacactaccaattcattcgaactataaataaaactgacgtaataaaccactcacatttcatcggcatcaaattttcattgtcgtgtgcgacccatgggtgcttcttaccgatcttctttatctgtagaaaccgtgggactgttttacgatgatcatgatgcttttgacagtcataaaagatggcgttcgtatatcgcgcctatttggtcttcccagaatgcaatagcccagccgaacccgacgcttatatatacatacgaacccgataattttattgccagaatgttaccaaaatttgttgcagctagtggcaatattacaaactgtatgctgatagctgatcacataggatgttgccagaaattttT-T----TC-TGGGCA--GTA----G--C--CAGA---AATG--TTAC---CT--A------G-A----------A-GT-----TGT---T-C-CAGC-----TA--G-----TTGTG-CA-----T-----A-T-T---TT-----C----AA----------C--------------T-------T----TCGTGG--A--------GTATTGTGCCA--A---A--------T--GGTT-ACCGTAA-GTA----A-GT-T---TTGCCAGC--TA---TG--GCA--T-----A-TT-T-C----CT-----TGTTCT-CA-AAA--TCTCGTGC--CTCTCGCTGG------CA------C-A---AA---------ATTGT-G----TTGC-----T-GCGATATTATTG--TTGTTATTTTCTTCGTAAT-AT-CGCGGGCGA--T---ACT-----TGCC--G-CAAAAATTTTTACTTTTGGATAAttgccagaatgttaacaagaagttgttgcagctagtggcaatatttcacttgtctcaaaatctggtctctggcaataaaatgttttgctgcaatgttgccgcaatacgcggcgatattgctgcaacaattttac
gi|6 : gattacatatcaccgcagactttaattttcaacattacacaacagtcgagtgaaagtttgttgaaatattacataaacgatcgtcgtacatataggcctatagcgtacaaacggtccgtagcgaaatagctgatcaacagtgacgtatagtcattacgatatgtacacaaccgttgtgccaactaccgattcattcgaactataaaataaaactgacgtaataaaccactcacatttcgatcggcatccaaaatttcattgttcgtgtggagacccatgggtgcttcttgccaatcttcttatctgtagaaaccgtggactgtttacgatgatcatgatgcttttgacagctcataaaagatggcgttcgtatatcgcgcctaaattggtcttcccagaatcaatagcccgagcccgaacccgacgcttaatataatacttacgaatcgaccgatcggttattgccagaatgttaccatcaaattgtttgccaagctagtgggcatattatcagaactgtatgctgatagctgatccacataggatgtttgcataataaatT-T----TG-CGG-CA--ATAT--TG--C--CAG---------------------A------G-A----------A-G------TGT---T-G-CAGCAATATTG--C-----T---G-CAAAGCAT-----A-T-T---T------TGAA-AC---T------A--------------G-------T----TG-CGG-CA--------GTACTG--C-----------------T--G------C---A---A----A-GCATG--TTGC-GGCAATATTGTG--GTA-ATATCAGA-TT-T-C---GTA-----TGCT-------AA--TTAGAT----TTGCGGC-AA------TATTGCC-A-G---AA---------AG-GA-T----TTGC------GGCAAT------A--TTAC---------TGCAA
gi|4 : gttgcattgcaagaatactaggtaccacataatagttggaaatgcg--C--CA-A---A--G--TAA----------------------------A-AT-----TGT---T-G-CAGCAA---TATCGC----C---G-CG----AT-----A-T-T---------------AC------------------------------------------GG-CA--------ACATTG---CAGCA---ACACATTTTT--G-TT-GCC---A-G-AGACCA-GA-TT--TTGA-GAC--AA--GTG--AAA-AT-----A-TTGC-C---ACT-----AG--CTGCA-ACA--ACT--------TCTGGT-AA------CA----------------------------------TT-C-----TGGCAAT------A--CTGC---------CAGA-------GAGAGTGAAGT---ATTGCCACTAGC-TG-CAACAA-CT----TCT--GGTAAtctaatttacataaatttaaatacgaaatctgatattaccgcaatattgctgcaatgtattgccagaatgttactacaatattgctgcaataatgccagaagatatcgccagaagggctgtatttcaataaggg
gi|8 : catatcaccagagacttaattttcaacattatcaaaacagtcgagtgaatagtttgttgaaatattacataaacgatcgtcgtacatataggcctatagcgtacaaaacggtcgtgcaaatagctgatcaacagtgattatagtcttacgatatgtacacaaccgttgtgcaacactaccgattcattcgaactataaataaaactgacgtaataaaccactcacatttcatcggcatcaaattttcattgtcgtgtgcgacccatgggtgttcttaccaatttttctttatctgtagaaaccgtgggactgttttacgatgatcatgatgcttttgacagctcataaaagatggcgttcgtatatcgcgcctaaattggtcttcccagaatgcaatagcccgagcccgaaccgacgcttatatatacttacgacccgatcggtttattgccagaatgttaccaaaatttgttgcagctagtggcaatattacaaactgtatgctgatagctgatcacataggatgttgccataaattttttctggcagtattgccagaatgT-----TGT---G-A-CAGCC----TA--G-----TT--G-CA----ATT----A-TCT---T------C----AC---T------C--------------T-------T----TC-TTG-CA---------TACT---CCAG-A---A--------T--G-T--ACC---A-G-A----ACGT-TG--TC-C-A-C--TA--GTG---CA-AT-----A-TT-TTC---ACT-----TGT-CT-CA-AAA--TCTGG-----CTCTGCC-AAA-----CA------CTA---AA---------AT-GT-G----TTGC-----T-GCAAT------G--TTTC---------CGTAATTATCCTCG--CGA------AT--------GCGCA-AAACAA-TTTTACTTT--GGT
gi|2 : -----TAT---T-G-CCAC-----TA--GC----T---G-CA----AC-----AAC-T---T------C----GTGG-TAA----C--------------A-------T----TC-TGG-CA--------ATACTG--CCAG-A---A--------A--G----AGT---G-A-A----A----TA--TTGC-CAC--TA--GCT--GCA-ACA----A-CT-T-C-----------TGTGGT--A-ACA--T----------TCTGGC-AATACTG-CA------G-A---AAGAGTGAAATAT-GC-A----CTGC------TGCAAC------AACTTCT---------GGTAAT-ATT--CTGGCAA--T---ACT-------GCA-G--AAAAA-TTTT-CTTtaagt
gi|5 : tatatacaatttacgtatcactttaccggagactaaattttcaacttatcaaagcggtcgagtgaatagtttgttgaaatattacataaacgacacgtcgtacatataggcctatagcgtacaaaacggtcgtcacgatagttgattaacagtgattagtcattaacgatatcgtacacaacagttgtgcaacactaccaattcattcgaactataaaaatgaaaaactgacgtaataaaaccactcacatttcatccgcatcaaattttcattggtcgtgtcgcgacccacgggtgctttcttaccgatcttctctatctgtagaaaccgtgggactgttttacgatgatcgcgatgcttttgacagctccatgaaacatggcgttcgtaatatcgcgcctaattggtcttcccagaatgcaatagcccacagccgaacccgacgctttatatatacatagaacccgaatcattttatttgccagaatgttaccaaaaatttgtgcagctgtccaatattacaaacgtgtatgctgatagctgaatcacataggaggttgcTG--GCA-AT-----A-TTGC-C---ACT-----AG--CTGCA-AAACTTCTGGTAACATTCTGGC-AATACTGCCA------G-A---AA---------GA-GT-GAAGATTGCCACTACTGCAAC------AACTTCT---------GGTAAC-ATT--CTGGCAA--T---ACT-------GCCAG-AAAAAA-TTTtttcacttgtctcaaaatctggtttctgcaacaaacaatgtggttgctgcaatgttgccgtaatatcgcggcgatctaatctgcactgccaacaattttactttggtaagg
gi|14 : acacaaccgttgtgcacactaccaattcattcgaactataaataaaactgacgtaataaaccactcacatttcatcggcatcaaattttcattgtcgtgtgcgacccatgggtgcttcttaccgatcttctttatctgtagaaaccgtgggactgttttacgatgatcatgatgcttttgacagtcataaaagatggcgttcgtatatcgcgcctatttggtcttcccagaatgcaatagcccagccgaacccgacgcttatatatacatacgaacccgataattttattgccagaatgttaccaaaatttgttgcagctagtggcaatattacaaactgtatgctgatagctgatcacataggatgttgccagT-----A-TT-T-C---ACT------GT-------AAA--TCTGGC----ATCTGGC-AA------CA------A-A---AT---------AT-AT-G----TTGC-----ATGgaatgttaacaagaagttgttgcagctagtggcaatatttcacttgtctcaaaatctggtctctggcaataaaatgttttgctgcaatgttgccgcaatacgcggcgatattgctgcaacaattttac
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): AGTTTCAATCGCAACTTCTCCTTCTTCCGGTTACGGTACATGACACTATNNNNNNNNNNNNNNNNNNNNNNNNNAGATGAACATTACTTGGATCTTATTCCGTATAAACA
Unaligned ( gi|13 ): TTCTTCTTCTTCCGGTTACGGACATGACACTTATAACTGTGTATTTT
Unaligned ( gi|17 ): CCATGCCTCAATTTTAAATTTGCATAAATTTTTATATG
Alignments
lowQualScore : 333333 3333333333333 11111 2222222222 1 11 1111 1111 11 2222222 33333333333333 2 111 111 11 11 1 1 1 1 1111 777777777777 333333 111 11111 444444444444444444444444444444444444444444444 11111111 1111111 11 11 111111111 2222222222 3333333333333333333 111111111 222222222 11 1 11 22222 11
lowQualScore : 444444 99 6 3 6 99999 1 6666666666666 6 66666 9999999999 77 0 5 1 5 5 8 0 0 8 8 88 8 11 0 6 6 7 6 4444 6 4444 6 11 1111111 6 6 666 6 6 0 6 6 1 99999999999999 99 3 9 0 6 2 6 5 333 77 6 8 8 8 1 0 444 8 5 8 8 8 11 0 11 0 0 0 8 8 8 5 5 6 3 888 6 6 1 5 77 2222 5 5 2 6 7 111111111111 99 1 5 5 66 66 111111 2 66 333 888 5 6 4 55555 444444444444444444444444444444444444444444444 4 88888888 66 5 66 99999 3333333 8888 66 5 33 5 33 4 4 2 444444444 5 66 4 5 5 5 0000000000 1111111111111111111 5 666666666 222222222 33 2 22 22222 5 77 55 5 77 5 5 33
lowQualScore : ...... .. . . . ..... . ............. . ..... .......... .. . . . . . . . . . . .. . .. . . . . . .... . .... . .. ....... . . ... . . . . . . .............. .. . . . . . . . ... .. . . . . . . ... . . . . . .. . .. . . . . . . . . . . ... . . . . .. .... . . . . . ............ .. . . . .. .. ...... . .. ... ... . . . ..... ............................................. . ........ .. . .. ..... ....... .... .. . .. . .. . . . ......... . .. . . . . .......... ................... . ......... ......... .. . .. ..... . .. .. . .. . . ..
lowQualScore : 888888 22 7 5 7 55555 4 6666666666666 7 77777 2222222222 99 1 7 4 7 7 0 8 8 0 0 88 0 00 8 7 7 3 7 2222 7 2222 7 55 7777777 7 7 888 7 7 7 7 7 7 22222222222222 22 2 3 7 7 5 7 7 888 77 7 0 0 0 4 8 000 0 6 0 0 0 00 8 00 8 6 8 0 0 0 8 5 7 3 333 7 7 7 7 99 1111 7 7 5 7 5 555555555555 22 7 0 0 99 99 555555 8 99 888 888 0 7 4 66666 222222222222222222222222222222222222222222222 4 11111111 99 6 99 22222 0000000 5555 99 0 88 6 88 4 4 0 888888888 0 99 5 0 0 0 8888888888 0000000000000000000 0 666666666 999999999 66 0 11 11111 7 99 99 7 99 7 7 88
consensus : NNNNNTACGATTTACGTATCACTT---CACCG--GAGACTT-AATTTTCAACATT-ATCACAA-ACGGTCGAGTGAA------AT--A--GTTTGTTGAAATATTACATAAACGAT-CGTCGTAC-----ATATAGGC----------CTATA--GCGTACAAAACGGTC-GT-GCGAA-TAGCTGATCAAC-AGTGAT-TATAGTCATTA-CGATAT-GTACACAACCGTTGTGCAA-CACTA-CCGATTCAT--TCGAACTATAAAA-T-AAAAACT-GACGTAATA----AA-CCACTCACAT----TTC-ATCGGCATTCAA-------A-TT-TTCATTG-T-CGTGT-GC-GACCCACGGGTGCTT-CTTACCGA-TCTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGAT-GATCACGAT-GCTTTTGACAGCT-CATAAAAGATGGCGTTCGT-ATATCGCGCCTAAATTGGTCTTCCCAGAATGCAATAGCCCG-AGCCCGAACCCGACGC-TT-ATAT-ATACATACGAAC---CCG-ATCGTTTTA-TTGCCAGAATGTT-ACC-A--AAATTTGTTGC--AGCTAGTTGGCAATATTA-CA-AAC-TGTATGCTGATAGCTGATTCACATAGGAATG-TTG-C-ANAA-AATTTTTCT-GGCAGTATTGCCAG-A--AT----GTTACC-AGA-AGTTGTTGCAGCTA-GTGGCAATA--TATT-TACTTCA--CTCTTTC-TGG-CAGTAT--TGCC--AGA---A--GTTAC--C---A---G-AAGTTGTTG-CAGC-----TAGT---GCA----AT-A-T-TTC------ACTC--------------TTTC-TGGCA--------GTATTG--CCGGAAT--G-TT-ACC---A-G-AA-GT-TG--TTGC-AGC--TAGTG--GCAAT-ATTT-CACT-----TGTTCTCA-AAATCTGGT--CTCTGGC-A-A-C--AA-A----AAAT-GT-G--------------TTGC-TGCAAT------G--TTGC---------CGTAA--TATTCGC-GGCGAT---A-TT-G--C-TG-C--AACA-A-TTTTACTTT--GGTAA
Reference ( family-580 ) : NNNNNTACGATTTACGTATCACTT---TACCG--GAGACTT-AATTTTCAACATT-ATCACAA-ACGGTCGAGTGAA------AT--A--GTTTGTTGAAATATTACATAAACGAT-CGTCGTAC-----ATATAGGC----------CTATA--GCGTACAAAACGGTC-GT-GCGAA-TAGCTGATCAAC-AGTGAT-TATAGTCATTA-CGATAT-GTACACAACCGTTGTGCAA-CACTA-CCGATTCAT--TCGAACTATAAAA-T-AAAAACT-GACGTAATA----AA-CCACTCACAT----TTC-ATCGGCATTCAA-------A-TT-TTCATTG-T-CGTGT-GC-GACCCACGGGTGCTT-CTTACCGA-TCTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATNGATCACGAT-GCTTTTGACAGCT-CATAAAAGATGGCGTTCGT-ATATCGCGCCTAAATTGGTCTTCCCAGAATGCAATAGCCCG-AGCCCGAACCCGACGC-TT-ATAT-ATACATACGAAC---CCG-ATCGTTTTA-TTGCCAGAATGTT-ACC-A--AAATTTGTTGC--AGCTAGTTGGCAATATTA-CA-AAC-TGTATGCTGATAGCTGATTCACATAGGAATG-TTG-C-AGAA-AATTTTTCT-GGCAGTATTGCCAG-A--AT----GTTACC-AGA-AGTTGTTGCAGCTA-GTNGCAATAC-TATTGTACTTCA--CTCTTTC-TGG-CAGTAT--TGCC--AGA---A--GTNAC--C---A---G-AAGTTGTTG-CAGC-----TAGT---GCA----AT-A-T-TTC------ACTC--------------TTTC-TGGCA--------GTACTG--CCAGAAT--G-TT-ACC---A-G-AA-GT-TG--TTGC-AGC--TAGTG--GCAAT-ATTT-CACT-----TGTTCTCA-AAATCTGGT--TTCTGGC-A-A-C--AA-A----AAAT-GT-G--------------TTGC-TGCAAT------G--TTGC---------CGTAA--TATTCGC-GGCGAT---ATTT-G--C-TG-C--AACA-A-TTTTACTTT--GGTAA
gi|1 : TACGATTTATGTATCAATCGGACACTGTCGAGACTT-AATTTTCAACATT-ATCACAA-ACAGTCGAGTGAA------ATTAATTGTTTGTTGAAATATTACATAAACGAT-CGTCGTAC-----ATATATGC----------CTATA--GCGTACAAAACGGT--GT-GCGAA-TAGCTGATCAACCAGTGAT-TATAGTCATTA-CGATAT-GTACACAACCATTGTGCAAACACTAACCAATTCATATTCGAACTATAAAA-T-AAAAACT-GACGTAATA----AA-TCACTCACAT----TTC-GTCGGCACTCAA-------AATT-TCCATTG-T-CGTGT-GC-GACCCATGGGTGCTT-CTTACAAA-TCTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATTCATCATGAT-GCTTTTGACAGCT-CATAAAAGATGGCGTTCAT-ATATCGCGCCTAA-TTGGTCTTCCCAGAATGCAATAGCCCG-AGCCCGAACCCGACGC-TT-ATAT-ATACATACGAAC---CCG-ATCATTTTA-TTGCCAGAATGTTTACC-A--AAATTTGTTGC--AGCTAGTTGGCAATATTA-CA-AAC-TGTATGCTGATAGCTGATTCACATAGGAATG-TTG-C-AGAA-AATTTTTCT-GGCAGTATTGCCAG-A--AT----GTTACC-AGA-AGTTGTTGCAGCTA-GTGGCAATACGTATTGTACTTCA--CTCTTTC-TGG-CAGTAT--TGCC--AGA---A--GTAAC--C---A---G-AAGTTGTTG-CAGC-----TAGT---GCA----AT-A-T-TTC------ACTC--------------TTTC-TGGCA--------GTATTG--CCAGAAT--G-TT-ACC---A-G-AA-GT-TG--TTGC-AGC--TAGTG--GCAAT-ATTT-CACT-----TGTTCTCA-AAATCTGGT--CTCTGGC-A-A-C--AA-A----AAAT-GT-G--------------TTGCTTGCAAT------G--TTGC---------CGTAA--TATTCGCGGGCGAT---ATTTGG--CGTG-C--AACA-A-TTTTACTTT--GGTAA
gi|10 : gaaat---TACCG--GAGACTA-AATGTTCAACTTTTATCACATTACGGCTGTGTGAATACTGAAT--A--GTCTGTTGAAATATTACATACACGAC-CGTCGTGCATTATATATAGACAGTTGAAACATTATATTGCGTACAAGACGGTC-AT-GCAAA-TAGCTGTTCGAC-A
gi|12 : ACGATTTACGTATCAC--------CG--GAGACTT-AATTTCCAACATT-ATCAC-A-ACAGTCGAGTG-A------AT--A--GTT
gi|14 : ttaT-ATTT-CACT------GT------AAATCTGGC--ATCTGGC-A-A-C--AA-A----ATAT-AT-G--------------TTGC-
gi|15 : TATT--GCGTACACCGCGGTC-GT-GCGAA-TAGCTGTTCAAG-AGatg
gi|16 : ctata-ATATCGCGCC-------GTCTTCCCAGAATGCAATAGCCTG-AGCCCGA
gi|2 : gTACAATTTACGTATCACTT---TACCG--GAGACTA-AATTTTCAAC-TT-ATCA-AA-GCGGTCGAGTGAA-------T--A--GTTTGTTGAAATATTACATAAACGACACGTCGTAC-----ATATAGGC----------CTATA--GCGTACAAAACGGTC-GTCACGA--TAGTTGATTAAC-AGTGAT-TA--GTCATTAACGATATCGTACACAACAGTTGTGCAA-CACTA-CCAATTCAT--TCGAACTATAAAAATGAAAAACT-GACGTAATA----AAACCACTCACAT----TTC-ATCCGCAT-CAA-------A-TT-TTCATTGGT-CGTGTCGC-GACCCACGGGTGCTTTCTTACCGA-TCTTCTCTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGAT-GATCGCGAT-GCTTTTGACAGCTCCATGAAACATGGCGTTCGTAATATCGCGCCT-AATTGGTCTTCCCAGAATGCAATAGCCCACAG-CCGAACCCGACGCTTT-ATAT-ATACATA-GAAC---CCGAATCATTTTATTTGCCAGAATGTT-ACCAA--AAATTTG-TGC--AGCT-GTC--CAATATTA-CA-AACGTGTATGCTGATAGCTGAATCACATAGGAG-G-TTG-CAAGAA-AATTTTTCT--GCAGTATTGCCAG-A--AT----ATTACC-AGA-AGTTGTTGCAGC-A-GT-GCA----------TATTTCA--CTCTTTC-T-G-CAGTAT--TGCC--AGA---AT-GTTACCAC---A---G-AAGTTGTTG-CAGC-----TAGTG--GCA----AT-A-T-TTC------ACTC--------------TTTC-TGGCA--------GTATTG--CCAGAAT--G-TT-ACC---ACG-AA-GT-TG--TTGC-AGC--TAGTG--GCAAT-ATTT-CACT-----TG-TCTCA-AAATCTGGT--TTCT-GC-A-A-C--AA-A----CAAT-GTGG--------------TTGC-TGCAAT------G--TTGC---------CGTAA--TA-TCGC-GGCGATCTAATCT-GCAC-TGCC--AACA-A-TTTTACTTT--GGTAA
gi|3 : tataTTACATATCAC--------CG--CAGACTTTAATTTTCAACATT-A-CACAA--CAGTCGAGTGAA------A------GTTTGTTGAAATATTACATAAACGAT-CGTCGTAC-----ATATAGGC----------CTATA--GCGTACAAA-CGGTCCGTAGCGAAATAGCTGATCAAC-AGTGACGTATAGTCATTA-CGATAT-GTACACAACCGTTGTGCCA--ACTA-CCGATTCAT--TCGAACTATAAAA-T-AAAA-CT-GACGTAATA----AA-CCACTCACAT----TTCGATCGGCATCCAA-------A-AT-TTCATTG-TTCGTGT-GGAGACCCATGGGTGCTT-CTTGCCAA-TCTTCTT-ATCTGT--------------AGAAAC--CGTGG-ACTGTTT-ACGAT-GATCATGAT-GCTTTTGACAGCT-CATAAAAGATGGCGTTCGT-ATATCGCGCCTAAATTGGTCTTCCCAGAAT-CAATAGCCCG-AGCCCGAACCCGACGC-TTAATATAATACTTACGAATCGACCG-ATCG-GTTA-TTGCCAGAATGTT-ACC-ATCAAATTGTTTGCCAAGCTAGTGGGC-ATATTATCAGAAC-TGTATGCTGATAGCTGATCCACATAGG-ATGTTTG-C-ATAATAAATTTTCTGGGCAGTA--GCCAGAA--AT----GTTACCTAGA-AGTTGTTCCAGCTA-GTTG---TGCATATT----TTCA--A-CTTTCGTGG--AGTATTGTGCC--AAAT--G--GTTAC--CGTAA---GTAAGTT-TTGCCAGC-----TATG---GC-----AT-A-T-TTC-------CTT--------------GTTC-Tgg
gi|3 : gaTTTC-TGGGCAGTA----GCC--AGA---AATGTTAC--CT--A---G-AAGTTGTTC-CAGC-----TAGTTGTGCAT---AT---T-TTC------AA-C--------------TTTCGTGG-A--------GTATTGTGCCA-AAT--GGTT-ACCGTAA-GTAA-GT-T---TTGCCAGC--TA-TG--GCA-T-ATTT-C-CT-----TGTTCTCA-AAATCTCGTGCCTCTCGCTG-G-C--AC-A----AAATTGT-G--------------TTGC-TGCGATATTATTG--TTGTTATTTTCTTCGTAA--TA-TCGCGGGCGAT---ACTT-G--C-CG-C--AAAA-ATTTTTACTTTTGGATAAcaaaatctcgtgcctctcgctggcacaaaattgtgttgctgcgatattattgttgttattttcttcgtaatatcgcgggcgatacttgccgcaaaaatttttacttttggataa
gi|4 : gattacatatcaccgcagactttaattttcaacattacacaacagtcgagtgaaagtttgttgaaatattacataaacgatcgtcgtacatataggcctatagcgtacaaacggtccgtagcgaaatagctgatcaacagtgacgtatagtcattacgatatgtacacaaccgttgtgccaactaccgattcattcgaactataaaataaaactgacgtaataaaccactcacatttcgatcggcatccaaaatttcattgttcgtgtggagacccatgggtgcttcttgccaatcttcttatctgtagaaaccgtggactgtttacgatgatcatgatgcttttgacagctcataaaagatggcgttcgtatatcgcgcctaaattggtcttcccagaatcaatagcccgagcccgaacccgacgcttaatataatacttacgaatcgaccgatcggttattgccagaatgttaccatcaaattgtttgccaagctagtgggcatattatcagaactgtatgctgatagctgatccacataggatgtttgcataataaatT---CACCA--GAGACTT-AATTTTCAACATT-ATCA-AA-ACAGTCGAGTGAA-------T--A--GTTTGTTGAAATATTACATAAACGAT-CGTCGTAC-----ATATAGGC----------CTATA--GCGTACAAAACGGTC-GT-GCAAA-TAGCTGATCAAC-AGTGAT-TATAGTC-TTA-CGATAT-GTACACAACCGTTGTGCAA-CACTA-CCGATTCAT--TCGAACTAT-AAA-T--AAAACT-GACGTAATA----AA-CCACTCACAT----TTC-ATCGGCA-TCAA-------A-TT-TTCATTG-T-CGTGT-GC-GACCCATGGGTG-TT-CTTACCAATTTTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGAT-GATCATGAT-GCTTTTGACAGCT-CATAAAAGATGGCGTTCGT-ATATCGCGCCTAAATTGGTCTTCCCAGAATGCAATAGCCCG-AGCCCGAA-CCGACGC-TT-ATAT-ATACTTACG-AC---CCG-ATCGGTTTA-TTGCCAGAATGTT-ACC-A--AAATTTGTTGC--AGCTAG-TGGCAATATTA-CA-AAC-TGTATGCTGATAGCTGA-TCACATAGG-ATG-TTGCC-ATAA-ATTTTTTCT-GGCAGTATTGCCAG-A--AT----GTTACC-AGA-AGTTGTTGCAGCTA-GTGGCAA---------TACTTCA--CTCTCTC-TGG-CAGTAT--TGCC--AGA---AT-GTTAC--C---A---G-AAGTTGTTG-CAGC-----TAGTG--GCA----AT-ATT-TTC------ACTTGTCTCAAAATCTGGTCTC-TGGCAACAAAAATGTGTTG--CTGCAAT--G-TT-GCC---G-T-AA----TA--TCGC-GGCGATATTGCTGCAACAATTT-TACT-----T
gi|5 : cataACACAACCGTTGTGCA--CACTA-CCAATTCAT--TCGAACTATAAA--T-AAAA-CT-GACGTAATA----AA-CCACTCACAT----TTC-ATCGGCAT-CAA-------A-TT-TTCATTG-T-CGTGT-GC-GACCCATGGGTGCTT-CTTACCGA-TCTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGAT-GATCATGAT-GCTTTTGACAG-T-CATAAAAGATGGCGTTCGT-ATATCGCGCCT-ATTTGGTCTTCCCAGAATGCAATAGCCC--AG-CCGAACCCGACGC-TT-ATAT-ATACATACGAAC---CCG-ATAATTTTA-TTGCCAGAATGTT-ACC-A--AAATTTGTTGC--AGCTAG-TGGCAATATTA-CA-AAC-TGTATGCTGATAGCTGA-TCACATAGG-ATG-TTGCC-AGAA-ATTTTTTCT-GGCAGTATTGCCAG-A--AT----GTTACC-AGA-AGTTGTTGCAG-TA-GTGGCAAT----------CTTCA--CTCTTTC-TGG-CAGTAT--TGCC--AGA---AT-GTTAC--C---A---G-AAGTT-TTG-CAGC-----TAG--------------------------------------------------TGGCA--------ATATTG--CCAGAAT--G-TTAACA---A-G-AA-GT-TG--TTGC-AGC--TAGTG--GCAAT-ATTT-CACT-----TG-TCTCA-AAATCTGGT--CTCTGGC-A-A-T-----A----AAAT-GT-T--------------TTGC-TGCAAT------G--TTGC---------CGCAA--TA--CGC-GGCGAT---A-TT-G--C-TG-C--AACA-A-TTTTACtgg
gi|6 : GCATTGCAAG-A--ATACTAGGTACC-ACATAATAGTTGGAAATGCGTTGCAGTAA-TATTG--CCGCAAATCCTTTC-TGG-CAATAT--TGCCGCAAATCTA--ATTAG--C---ATACG-AAATC--TG-ATAT-----TACC---ACA----AT-A-T-TGCCGCAACATGC--------------TTTG-CAGCA--------GTACTG--CCGCAACTAG-TT--TC---A-A-AA-TA-TGCTTTGC-AGCAATATTGCTGCAAC-ACTT-CTCTGGCAATATTGCCGCAAATCTAAT--TTACATA-A-A-TTTAA-ATACGAAAT-CT-GATATTACCGCAATATTGC-TGCAAT------GTATTGC---------CAGAA--TGTT-AC-TACAAT---A-TT-G--C-TG-C--AATA-A-T
gi|6 : gttTTTG-CGG-CAATAT--TGCC--AG------------------A---G-AAG-TGTTG-CAGCAATATTGCT---GCAAAGCAT-A-T-TTTGAA---ACTA--------------GTTG-CGGCA--------GTACTG--C-----T--G------C---A---AA-GCATG--TTGC----------G--GCAAT-ATT----GT-----GGT----A-ATATCAGAT--TTC--GT-ATG-C--TA-ATT--AGAT-------------------TTGC-GGCAAT------A--TTGC---------CAGAAAGGATTTGC-GGCAAT---A-TT-A--C-TG-C--AACGCA-TTTgccagaagatatcgccagaagggctgtatttcaataaggg
gi|6 : gttgcattgcaagaatactaggtaccacataatagttggGAATG-TTA-C--TAC-AATATTGCT-G-CAATAATGCCAG-AAGAT----ATCGCC-AGA-AGtctaatttacataaatttaaatacgaaatctgatattaccgcaatattgctgcaatgtattgccagaatgttactacaatattgctgcaataatgccagaagatatcgccagaagggctgtatttcaataaggg
gi|7 : gttgcattgcaagaatactaggtaccacataatagttggaaatgcgttgcagtaatattgccgcaaatcctttctggcaatattgccgcaaatctaattagcatacgaaatctgatattaccacaatattgccgcaacatgctttgcagcagtactgccgcaactagtttcaaaatatgctttgcagcaatattgctgcaacacttctctggcaatattgccgcaaatctaatttacataaatttaaatacgaaatctgatattaccgcaatattgctgcaatgtattgccaA-T-AAAAATTTGATGTAATACAGAAA-CCTGCAACATGTTTTTC-ATCAGCATTCAACTCCCTCA-TTCTTCGCTA-C-AGTGA-GC-TTTTCACGGGTGCTT-CTTATCGA-TCTTCTCCATCTGTGGACTCAATAGTCAGGAAACGGCGTGGGCGTGTT--------GGCCACGATAGCTTT--ATAGAT-C--CAAAGATGGCATTTGT-ggctgtatttcaataaggg
gi|8 : tacgaaatataaaaaggcactactaccaccaagttgacataggaattttctaatgcacagatatttttaggagtccaaataatcctttggcactTTGTGA-CAGCC----TAGTT--GCA----ATTA-TCTTC------ACTC--------------TTTC-TTGCA---------TACT---CCAGAAT--G-T--ACC---A-G-AACGT-TG--TC-C-A-C--TAGTG---CAAT-ATTTTCACT-----TGT-CTCA-AAATCTGGC--T-CTGCC-A-AAC--ACTA----AAAT-GT-G--------------TTGC-TGCAAT------G--TTTC---------CGTAAT-TATCCTC--GCGA----A--T-G--C--G-CAAAACA-A-TTTTACTTT--GGTttttgccgctattctctacccaattcgcatagtgtagaacccg
gi|9 : CAGTCGAGTGAA-------T--A--GTTTGTTGAAATTTTGCATAAACGAT-CGTCGTAC-----ATATAAGC----------CTATA--GCGTACAAAACGGTC-GT-GCGAA-TAGCTGATCAAC-AGTGAT-TATAGTCATTG-CGATAT-GTAtaagt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AGTTTCAATCGCAACTTCTCCTTCTTCCGGTTACGGTACATGACACTATNNNNNNNNNNNNNNNNNNNNNNNNNAGATGAACATTACTTGGATCTTATTCCGTATAAACA
Unaligned ( gi|13 ): TTCTTCTTCTTCCGGTTACGGACATGACACTTATAACTGTGTATTTT
Unaligned ( gi|17 ): CCATGCCTCAATTTTAAATTTGCATAAATTTTTATATG
Alignments
lowQualScore : 333333 3333333333333 11111 2222222222 1 11 11 1 1111 1111 1 2222222 33333333333333 111 111 2222222 1 1 1 1 1111 66666666666666666 111111 333333 1111111 11111 444444444444444444444444444444444444444444444444444444 11111111 11 11 11 111111111 11111111111 11111 111111 222222222 22 1 2222222222222 1111111 11
lowQualScore : 666666 99 6 3 6 99999 1 6666666666666 6 66666 9999999999 77 0 5 1 5 5 8 0 0 8 8 88 8 11 44 6 5 6 4444 6 4444 6 8 1111111 6 6 666 6 6 0 6 6 1 99999999999999 99 3 6 0 6 2 6 5 333 77 6 8 8 8 6 111 6 99 6 6 9999 99 99 1111111 5 1 5 5 5 2 1 9 5 0 5 1 5 5 66 2 4 4 66 8888 4 4 5 5 666 5 66 00000000000000000 555555 4 1 4 66 66 66 444444 55 2222222 4 8 1 3 66666 444444444444444444444444444444444444444444444444444444 4 66666666 66 55 00 4 9999999 777 66 8 22 5 22 4 4 0 444444444 5 66 4 5 5 99999999999 5 1 00000 5 666666 222222222 11 2 5555555555555 0000000 88888 55 5 77 5 5 33
lowQualScore : ...... .. . . . ..... . ............. . ..... .......... .. . . . . . . . . . . .. . .. .. . . . .... . .... . . ....... . . ... . . . . . . .............. .. . . . . . . . ... .. . . . . . ... . .. . . .... .. .. ....... . . . . . . . . . . . . . . .. . . . .. .... . . . . ... . .. ................. ...... . . . .. .. .. ...... .. ....... . . . . ..... ...................................................... . ........ .. .. .. . ....... ... .. . .. . .. . . . ......... . .. . . . ........... . . ..... . ...... ......... .. . ............. ....... ..... .. . .. . . ..
lowQualScore : 333333 22 7 5 7 55555 4 6666666666666 7 77777 2222222222 99 1 7 4 7 7 0 8 8 0 0 88 0 00 00 7 5 7 2222 7 2222 7 0 7777777 7 7 888 7 7 7 7 7 7 22222222222222 22 2 7 7 7 5 7 7 888 77 7 0 0 0 7 777 7 33 7 7 3333 22 22 5555555 7 4 7 7 7 1 4 4 0 0 0 0 0 0 11 0 4 4 11 9999 4 4 0 6 222 6 99 44444444444444444 999999 4 1 4 11 11 11 222222 55 9999999 0 0 4 6 44444 111111111111111111111111111111111111111111111111111111 0 11111111 11 66 66 4 4444444 777 11 9 22 7 22 0 0 9 888888888 0 99 5 0 0 88888888888 0 4 00000 0 444444 999999999 44 0 9999999999999 4444444 00000 99 7 99 7 7 88
consensus : NNNNNTACGATTTACGTATCACTT---CACCG--GAGACTT-AATTTTCAACATT-ATCACAA-ACGGTCGAGTGAA------AT--A--GTTTGTTGAAATATTACATAAACGAT-CGTCGTAC-----ATATAGGC----------CTATA--GCGTACAAAACGGTC-GT-GCGAA-TAGCTGATCAAC-AGTGAT-TATAGTCATTA-CGATAT-GTACACAACCGTTGTGCAA-CACTA-CCGATTCAT--TCGAACTATAAAA-T-AAAAACT-GACGTAATA----AA-CCACTCACAT----TTC-ATCGGCATTCAA-------A-TT-TTCATTG-T-CGTGT-GC-GACCCACGGGTGCTT-CTTACCGA-TCTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATG-ATCACGAT-GCTTTTGACAGCT-CATAAAAGATGGCGTTCGT-ATATCGCGCCTAAATTGGTCTTCCCAGAATGCAATAGCCCG-AGCCCGAACCCGACGC-TT-ATAT-ATACATACG-AAC---CCG-ATCGTTTTA-TTGCCAGAATGTT-ACC-A--AAATTTG--TTGC--AGCTAGT--TG--GCAA-TA-TTA-CA-AAC-TGTATGCTGATAGCTGATTCACATAGGAATG-TTG-C-ANAA-AATTTTTCT-GGCAG--TATTGCCA-G-A--AT----GTTACC-AGA-AGTTGT-TGCAGCTA-G-TGG--CA-AT---A---TATT-TACTTCA--C---TCTTTC-TGG-CA--GTAT--TGC--CAGA---AT-GTTAC--C---A---G-AA-GTTGTTG-CAGC-----TA---GT-GC---AA----T-A-T-TT------C---ACTC--------------TTTC-TGGCA--------GTAT--TGCCGNAAT--GTT-ACC---A-G-AA-GTTG--TCG-CAGC--TAGTG--GCAAT-ATTT-CACT-----TGTTCTCA-AAATCTGGT--CTCTGGC-A-A--CAA-A----AAA-TGT-G---TTGC-TGCAA------TGTTG---------CCGTAA--TATTCGC-GG----------CGAT---A-T-T--G--C-TG-C--AACA-A-TTTTACTTT--GGTAA
Reference ( family-580 ) : NNNNNTACGATTTACGTATCACTT---CACCG--GAGACTT-AATTTTCAACATT-ATCACAA-ACGGTCGAGTGAA------AT--A--GTTTGTTGAAATATTACATAAACGAT-CGTCGTAC-----ATATAGGC----------CTATA--GCGTACAAAACGGTC-GT-GCGAA-TAGCTGATCAAC-AGTGAT-TATAGTCATTA-CGATAT-GTACACAACCGTTGTGCAA-CACTA-CCGATTCAT--TCGAACTATAAAA-T-AAAAACT-GACGTAATA----AA-CCACTCACAT----TTC-ATCGGCATTCAA-------A-TT-TTCATTG-T-CGTGT-GC-GACCCACGGGTGCTT-CTTACCGA-TCTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATG-ATCACGAT-GCTTTTGACAGCT-CATAAAAGATGGCGTTCGT-ATATCGCGCCTAAATTGGTCTTCCCAGAATGCAATAGCCCG-AGCCCGAACCCGACGC-TT-ATAT-ATACATACG-AAC---CCG-ATCGTTTTA-TTGCCAGAATGTT-ACC-A--AAATTTG--TTGC--AGCTAGT--TG--GCAA-TA-TTA-CA-AAC-TGTATGCTGATAGCTGATTCACATAGGAATG-TTG-C-ANAA-AATTTTTCT-GGCAG--TATTGCCA-G-A--AT----GTTACC-AGA-AGTTGT-TGCAGCTA-G-TGG--CA-AT---A---TATT-TACTTCA--C---TCTTTC-TGG-CA--GTAT--TGC--CAGA---A--GTTAC--C---A---G-AA-GTTGTTG-CAGC-----TA---GT-GC---AA----T-A-T-TT------C---ACTC--------------TTTC-TGGCA--------GTAT--TGCCGGAAT--GTT-ACC---A-G-AA-GTTG--TTG-CAGC--TAGTG--GCAAT-ATTT-CACT-----TGTTCTCA-AAATCTGGT--CTCTGGC-A-A--CAA-A----AAA-TGT-G---TTGC-TGCAA------TGTTG---------CCGTAA--TATTCGC-GG----------CGAT---A-T-T--G--C-TG-C--AACA-A-TTTTACTTT--GGTAA
gi|1 : TACGATTTATGTATCAATCGGACACTGTCGAGACTT-AATTTTCAACATT-ATCACAA-ACAGTCGAGTGAA------ATTAATTGTTTGTTGAAATATTACATAAACGAT-CGTCGTAC-----ATATATGC----------CTATA--GCGTACAAAACGGT--GT-GCGAA-TAGCTGATCAACCAGTGAT-TATAGTCATTA-CGATAT-GTACACAACCATTGTGCAAACACTAACCAATTCATATTCGAACTATAAAA-T-AAAAACT-GACGTAATA----AA-TCACTCACAT----TTC-GTCGGCACTCAA-------AATT-TCCATTG-T-CGTGT-GC-GACCCATGGGTGCTT-CTTACAAA-TCTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATTCATCATGAT-GCTTTTGACAGCT-CATAAAAGATGGCGTTCAT-ATATCGCGCCTAA-TTGGTCTTCCCAGAATGCAATAGCCCG-AGCCCGAACCCGACGC-TT-ATAT-ATACATACG-AAC---CCG-ATCATTTTA-TTGCCAGAATGTTTACC-A--AAATTTG--TTGC--AGCTAGT--TG--GCAA-TA-TTA-CA-AAC-TGTATGCTGATAGCTGATTCACATAGGAATG-TTG-C-AGAA-AATTTTTCT-GGCAG--TATTGCCA-G-A--AT----GTTACC-AGA-AGTTGT-TGCAGCTA-G-TGG--CA-AT---ACG-TATTGTACTTCA--C---TCTTTC-TGG-CA--GTAT--TGC--CAGA---A--GTAAC--C---A---G-AA-GTTGTTG-CAGC-----TA---GT-GC---AA----T-A-T-TT------C---ACTC--------------TTTC-TGGCA--------GTAT--TGCCAGAAT--GTT-ACC---A-G-AA-GTTG--TTG-CAGC--TAGTG--GCAAT-ATTT-CACT-----TGTTCTCA-AAATCTGGT--CTCTGGC-A-A--CAA-A----AAA-TGT-G---TTGCTTGCAA------TGTTG---------CCGTAA--TATTCGCGGG----------CGAT---A-T-TTGG--CGTG-C--AACA-A-TTTTACTTT--GGTAA
gi|10 : gaaatACCG--GAGACTA-AATGTTCAACTTTTATCACATTACGGCTGTGTGAATACTGAAT--A--GTCTGTTGAAATATTACATACACGAC-CGTCGTGCATTATATATAGACAGTTGAAACATTATATTGCGTACAAGACGGTC-AT-GCAAA-TAGCTGTTCGAC-A
gi|12 : tACGATTTACGTATCAC--------CG--GAGACTT-AATTTCCAACATT-ATCAC-A-ACAGTCGAGTG-A------AT--A--GTT
gi|14 : ttaT-ATTT-CACT------GT------AAATCTGGC--ATCTGGC-A-A--CAA-A----ATA-TAT-G---TTGC-
gi|15 : TATT--GCGTACACCGCGGTC-GT-GCGAA-TAGCTGTTCAAG-AGatg
gi|16 : ctata-ATATCGCGCC-------GTCTTCCCAGAATGCAATAGCCTG-AGCCCGA
gi|2 : gTACAATTTACGTATCACTT---TACCG--GAGACTA-AATTTTCAAC-TT-ATCA-AA-GCGGTCGAGTGAA-------T--A--GTTTGTTGAAATATTACATAAACGACACGTCGTAC-----ATATAGGC----------CTATA--GCGTACAAAACGGTC-GTCACGA--TAGTTGATTAAC-AGTGAT-TA--GTCATTAACGATATCGTACACAACAGTTGTGCAA-CACTA-CCAATTCAT--TCGAACTATAAAAATGAAAAACT-GACGTAATA----AAACCACTCACAT----TTC-ATCCGCAT-CAA-------A-TT-TTCATTGGT-CGTGTCGC-GACCCACGGGTGCTTTCTTACCGA-TCTTCTCTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATG-ATCGCGAT-GCTTTTGACAGCTCCATGAAACATGGCGTTCGTAATATCGCGCCT-AATTGGTCTTCCCAGAATGCAATAGCCCACAG-CCGAACCCGACGCTTT-ATAT-ATACATA-G-AAC---CCGAATCATTTTATTTGCCAGAATGTT-ACCAA--AAATTTG---TGC--AGCT-GT--C----CAA-TA-TTA-CA-AACGTGTATGCTGATAGCTGAATCACATAGGAG-G-TTG-CAAGAA-AATTTTTCT--GCAG--TATTGCCA-G-A--AT----ATTACC-AGA-AGTTGT-TGCAGC-A-G-T-G--CA---------------TATTTCA--C---TCTTTC-T-G-CA--GTAT--TGC--CAGA---AT-GTTACCAC---A---G-AA-GTTGTTG-CAGC-----TA---GTGGC---AA----T-A-T-TT------C---ACTC--------------TTTC-TGGCA--------GTAT--TGCCAGAAT--GTT-ACC---ACG-AA-GTTG--TTG-CAGC--TAGTG--GCAAT-ATTT-CACT-----TG-TCTCA-AAATCTGGT--TTCT-GC-A-A--CAA-A----CAA-TGTGG---TTGC-TGCAA------TGTTG---------CCGTAA--TA-TCGC-GG----------CGATCTAA-TCT--GCAC-TGCC--AACA-A-TTTTACTTT--GGTAA
gi|3 : tataTTACATATCAC--------CG--CAGACTTTAATTTTCAACATT-A-CACAA--CAGTCGAGTGAA------A------GTTTGTTGAAATATTACATAAACGAT-CGTCGTAC-----ATATAGGC----------CTATA--GCGTACAAA-CGGTCCGTAGCGAAATAGCTGATCAAC-AGTGACGTATAGTCATTA-CGATAT-GTACACAACCGTTGTGCCA--ACTA-CCGATTCAT--TCGAACTATAAAA-T-AAAA-CT-GACGTAATA----AA-CCACTCACAT----TTCGATCGGCATCCAA-------A-AT-TTCATTG-TTCGTGT-GGAGACCCATGGGTGCTT-CTTGCCAA-TCTTCTT-ATCTGT--------------AGAAAC--CGTGG-ACTGTTT-ACGATG-ATCATGAT-GCTTTTGACAGCT-CATAAAAGATGGCGTTCGT-ATATCGCGCCTAAATTGGTCTTCCCAGAAT-CAATAGCCCG-AGCCCGAACCCGACGC-TTAATATAATACTTACG-AATCGACCG-ATCG-GTTA-TTGCCAGAATGTT-ACC-ATCAAATTGT--TTGCCAAGCTAGT--GG--GC-A-TA-TTATCAGAAC-TGTATGCTGATAGCTGATCCACATAGG-ATGTTTG-C-ATAATAAATTTTCTGGGCAG--TA--GCCA-GAA--AT----GTTACCTAGA-AGTTGT-TCCAGCTA-G-TTG--T--GC---A---TATT----TTCA--A----CTTTCGTGG--A--GTATTGTGC--CAAAT--G--GTTAC--CGTAA---GTAA-GTT-TTGCCAGC-----TA---TG-GC----A----T-A-T-TT------C----CTT--------------GTTC-Tgg
gi|3 : gaAA-TACTTA-CG-AAT-CG---ACCGATCGGTTATTGCCA---GAATG-TTA-CCATCA-AATTGTT-T-GCCAAGCTAGTG--G-G-C--AT----ATTATC-AGA-A-CTGTATGCTGATA-GCTGATCCACAT---AGGATGTT-TGCATAA--TAAAT-TTTC-TGGGCA--GTA----GC--CAGA---AATGTTAC--CT--A---G-AA-GTTGTTC-CAGC-----TAGTTGT-GC----A----T-ATT-TT------C---AA-C--------------TTTCGTGG-A--------GTATTGTGCC-AAATG-GTT-ACCGTAA-GTAA-GTT---TTGCCAGC--TA-TG--GC-AT-ATTT-C-CT-----TGTTCTCA-AAATCTCGTGCCTCTCGCTG-G--CAC-A----AAATTGT-G---TTGC-TGCGATATTATTGTTGTTATTTTCTTCGTAA--TA-TCGCGGG----------CGAT---ACT-T--G--C-CG-C--AAAA-ATTTTTACTTTTGGATAAcaaaatctcgtgcctctcgctggcacaaaattgtgttgctgcgatattattgttgttattttcttcgtaatatcgcgggcgatacttgccgcaaaaatttttacttttggataa
gi|4 : gattacatatcaccgcagactttaattttcaacattacacaacagtcgagtgaaagtttgttgaaatattacataaacgatcgtcgtacatataggcctatagcgtacaaacggtccgtagcgaaatagctgatcaacagtgacgtatagtcattacgatatgtacacaaccgttgtgccaactaccgattcattcgaactataaaataaaactgacgtaataaaccactcacatttcgatcggcatccaaaatttcattgttcgtgtggagacccatgggtgcttcttgccaatcttcttatctgtagaaaccgtggactgtttacgatgatcatgatgcttttgacagctcataaaagatggcgttcgtatatcgcgcctaaattggtcttcccagaatcaatagcccgagcccgaacccgacgcttaatatT---CACCA--GAGACTT-AATTTTCAACATT-ATCA-AA-ACAGTCGAGTGAA-------T--A--GTTTGTTGAAATATTACATAAACGAT-CGTCGTAC-----ATATAGGC----------CTATA--GCGTACAAAACGGTC-GT-GCAAA-TAGCTGATCAAC-AGTGAT-TATAGTC-TTA-CGATAT-GTACACAACCGTTGTGCAA-CACTA-CCGATTCAT--TCGAACTATAAA--T-AAAA-CT-GACGTAATA----AA-CCACTCACAT----TTC-ATCGGCAT-CAA-------A-TT-TTCATTG-T-CGTGT-GC-GACCCATGGGTG-TT-CTTACCAATTTTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATG-ATCATGAT-GCTTTTGACAGCT-CATAAAAGATGGCGTTCGT-ATATCGCGCCTAAATTGGTCTTCCCAGAATGCAATAGCCCG-AGCCCGAA-CCGACGC-TT-ATAT-ATACTTACG--AC---CCG-ATCGGTTTA-TTGCCAGAATGTT-ACC-A--AAATTTG--TTGC--AGCTAG---TG--GCAA-TA-TTA-CA-AAC-TGTATGCTGATAGCTGA-TCACATAGG-ATG-TTGCC-ATAA-ATTTTTTCT-GGCAG--TATTGCCA-G-A--AT----GTTACC-AGA-AGTTGT-TGCAGCTA-G-TGG--CA-A-------------TACTTCA--C---TCTCTC-TGG-CA--GTAT--TGC--CAGA---AT-GTTAC--C---A---G-AA-GTTGTTG-CAGC-----TA---GTGGC---AA----T-ATT-TT------C---ACTTGTCTCAAAATCTGGTCTC-TGGCAACAAAAATGTGT--TGCTGCAAT--GTT-GCC---G-T-AA---TA--TCG-CGGCGATATTGCTGCAACAATTT-TACT-----T
gi|5 : cataACACAACCGTTGTGCA--CACTA-CCAATTCAT--TCGAACTATAAA--T-AAAA-CT-GACGTAATA----AA-CCACTCACAT----TTC-ATCGGCAT-CAA-------A-TT-TTCATTG-T-CGTGT-GC-GACCCATGGGTGCTT-CTTACCGA-TCTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATG-ATCATGAT-GCTTTTGACAG-T-CATAAAAGATGGCGTTCGT-ATATCGCGCCT-ATTTGGTCTTCCCAGAATGCAATAGCCC--AG-CCGAACCCGACGC-TT-ATAT-ATACATACG-AAC---CCG-ATAATTTTA-TTGCCAGAATGTT-ACC-A--AAATTTG--TTGC--AGCTAG---TG--GCAA-TA-TTA-CA-AAC-TGTATGCTGATAGCTGA-TCACATAGG-ATG-TTGCC-AGAA-ATTTTTTCT-GGCAG--TATTGCCA-G-A--AT----GTTACC-AGA-AGTTGT-TGCAG-TA-G-TGG--CA-AT--------------CTTCA--C---TCTTTC-TGG-CA--GTAT--TGC--CAGA---AT-GTTAC--C---A---G-AA-GTT-TTG-CAGC-----TA---G------------------------------------------------------TGGCA--------ATAT--TGCCAGAAT--GTTAACA---A-G-AA-GTTG--TTG-CAGC--TAGTG--GCAAT-ATTT-CACT-----TG-TCTCA-AAATCTGGT--CTCTGGC-A-A--T---A----AAA-TGT-T---TTGC-TGCAA------TGTTG---------CCGCAA--TA--CGC-GG----------CGAT---A-T-T--G--C-TG-C--AACA-A-TTTTACtgg
gi|6 : G--CATTGCAA-G-A--ATACTAGGTACC-ACATAATAGT-TGGAAATGCG-TTG--CA-GT---AA--TATT--GCCGCAAAT---CCTTTC-TGG-CA--ATAT--TGCCGCAAATCTA--ATTAG--C---ATACG-AA-AT--CTG-ATAT-----TA---CC-AC---AA----T-A-T-TGCCGCAAC---ATGC--------------TTTG-CAGCA--------GTAC--TGCCGCAACTAGTT--TC---A-A-AA-TATGCTTTG-CAGCAATATTGCTGCAAC-ACTT-CTCTGGCAATATTGCCGCAAATCTAAT--TTACATA-A-ATTTAA-ATACGAAA-TCT-GATATTAC-CGCAA------TATTG---------CTGCAATGTATTGCC-AGAATGTTACTACAAT---A-T-T--G--C-TG-C--AATA-A-T
gi|6 : gttTTTG-CGG-CA--ATAT--TGC--CAGA---------------------G-AA-GT-GTTG-CAGCAATATTG---CT-GC---AAAGCAT-A-T-TT------TGAAACTA--------------GTTG-CGGCA--------GTAC--TGCTGCAA-------AGC---A--------TG--TTG-C---------G--GCAAT-ATT----GT-----GGT----A-ATATCAGAT--TTC--GT-ATG--CTA-ATT--AGA-T-------TTGC-GGCAA------TATTG---------CCAGAAAGGATTTGC-GG----------CAAT---A-T-T--A--C-TG-C--AACGCA-TTTgccagaagatatcgccagaagggctgtatttcaataaggg
gi|6 : gttgcattgcaagaatactaggtaccacataatagttggCATACGAAAT---CTG-A------TA-TTACCACAATATT-GCC-G--CAACATGCTTTGC--AGC-AGTACTGCCGCAACTAGTTT-CA-AA---ATATGCT--TTGC----------AGCAATA-TTG-CTGCAA-CACTTCTCT-GGCAA--TATTGCCGCA-A--ATCTAATTTA-C-ATA-AATT-----TAAATA----CG--AA-ATCTGA---TA-T-TACCGCA--A---TATTGC-T-G-CAATGTAT--TGC--CAGA---AT-GTTAC--T---A---C-AATATTGCTG-CAA------TA---AT-GC---tctaatttacataaatttaaatacgaaatctgatattaccgcaatattgctgcaatgtattgccagaatgttactacaatattgctgcaataatgccagaagatatcgccagaagggctgtatttcaataaggg
gi|6 : gttgcattgcaagaatactaggtaccacataatagttggaaatgcgttgcagtaatattgccgcaaatcctttctggcaatattgccgcaaatctaattagTTAC--C---G---C-AATATTGCTG-CAATG----TA---TT-GCCAGAA----T-G-T-T-----------ACT----------------------ACA--------ATAT--TGCTGCAAT--AAT-GCC---A-G-AA-GATA--TCGCCAG----AAGG--GCTGT-ATTT-CAcagaagatatcgccagaagggctgtatttcaataaggg
gi|6 : gttgcattgcaagaatactaggtaccacataatagttggaaatgcgttgcagtaatattgccgcaaatcctttctggcaatattgccgcaaatctaattagcatacgaaatctgatattaccacaatattgccgcaacatgctttgcagcagtactgccgcaactagtttcaaaatatgctttgcagcaatattgctgcaacacttctctggcaatattgccgcaaatctaatttacataaatttaaatacgaaatctgataGAATG-TTA-C--TAC-AATATTGCT-G-CAA--TAATGCCA-G-AAGAT----ATCGCC-AGA-AGataaggg
gi|7 : gttgcattgcaagaatactaggtaccacataatagttggaaatgcgttgcagtaatattgccgcaaatcctttctggcaatattgccgcaaatctaattagcatacgaaatctgatattaccacaatattgccgcaacatgctttgcagcagtactgccgcaactagtttcaaaatatgctttgcagcaatattgctgcaacacttctctggcaatattgccgcaaatctaatttacataaatttaaatacgaaatctgatattaccgcaatattgctgcaatgtattgccaA-T-AAAAATTTGATGTAATACAGAAA-CCTGCAACATGTTTTTC-ATCAGCATTCAACTCCCTCA-TTCTTCGCTA-C-AGTGA-GC-TTTTCACGGGTGCTT-CTTATCGA-TCTTCTCCATCTGTGGACTCAATAGTCAGGAAACGGCGTGGGCGTGT-------TG-GCCACGATAGCTTT--ATAGAT-C--CAAAGATGGCATTTGT-ggctgtatttcaataaggg
gi|8 : tacgaaatataaaaaggcactactaccaccaagttgacataggaattttctaatgcacagatatttttaggagtccaaataatcctttggcactTTGTGA-CAGCC----TA---GTTGC---AA----TTA-TCTT------C---ACTC--------------TTTC-TTGCA---------TAC--T-CCAGAAT--GT--ACC---A-G-AACGTTG--TC--CA-C--TAGTG---CAAT-ATTTTCACT-----TGT-CTCA-AAATCTGG---CTCTGCC-A-AA-CACTA----AAA-TGT-G---TTGC-TGCAA------TGTTT---------CCGTAAT-TATCCTC--G----------CGA----A---T--G--C--G-CAAAACA-A-TTTTACTTT--GGTttttgccgctattctctacccaattcgcatagtgtagaacccg
gi|9 : CAGTCGAGTGAA-------T--A--GTTTGTTGAAATTTTGCATAAACGAT-CGTCGTAC-----ATATAAGC----------CTATA--GCGTACAAAACGGTC-GT-GCGAA-TAGCTGATCAAC-AGTGAT-TATAGTCATTG-CGATAT-GTAtaagt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AGTTTCAATCGCAACTTCTCCTTCTTCCGGTTACGGTACATGACACTATNNNNNNNNNNNNNNNNNNNNNNNNNAGATGAACATTACTTGGATCTTATTCCGTATAAACA
Unaligned ( gi|13 ): TTCTTCTTCTTCCGGTTACGGACATGACACTTATAACTGTGTATTTT
Unaligned ( gi|17 ): CCATGCCTCAATTTTAAATTTGCATAAATTTTTATATG
Alignments
lowQualScore : 333333 3333333333333 11111 2222222222 1 11 11 1 1111 1111 1 2222222 33333333333333 111 11111 111 2222222 1 1 1 111 1111111 66666666666666666 111111 11111 1111111 11111 4444444444444444444444444444444444444444444444444444 11111111 111 11 11 11111 111 11111111111 11111 111111 222222222 22 1 2222222222222 1111111 11
lowQualScore : 666666 99 6 3 6 99999 1 6666666666666 6 66666 9999999999 77 0 5 1 5 5 8 0 0 8 8 88 8 11 44 6 5 6 4444 6 4444 6 8 1111111 6 6 666 6 6 0 6 6 1 99999999999999 99 3 6 0 6 2 6 5 333 77 6 8 8 8 33333 6 111 6 6 9999 99 99 1111111 5 1 5 5 5 2 1 2 5 888 1 5 5 66 0 5 888 3333333 5 5 0 5 5 5 777 66 00000000000000000 555555 4 4 66 66 4 33333 55 2222222 4 8 1 3 66666 0 4444444444444444444444444444444444444444444444444444 4 66666666 66 33 77777777 777 4 4 000 66 1 4 22 5 22 4 4 0 11111 222 5 66 4 5 5 99999999999 5 1 00000 5 666666 222222222 11 2 5555555555555 0000000 88888 55 5 77 5 5 33
lowQualScore : ...... .. . . . ..... . ............. . ..... .......... .. . . . . . . . . . . .. . .. .. . . . .... . .... . . ....... . . ... . . . . . . .............. .. . . . . . . . ... .. . . . . ..... . ... . . .... .. .. ....... . . . . . . . . . ... . . . .. . . ... ....... . . . . . . ... .. ................. ...... . . .. .. . ..... .. ....... . . . . ..... . .................................................... . ........ .. .. ........ ... . . ... .. . . .. . .. . . . ..... ... . .. . . . ........... . . ..... . ...... ......... .. . ............. ....... ..... .. . .. . . ..
lowQualScore : 333333 22 7 5 7 55555 4 6666666666666 7 77777 2222222222 99 1 7 4 7 7 0 8 8 0 0 88 0 00 00 7 5 7 2222 7 2222 7 0 7777777 7 7 888 7 7 7 7 7 7 22222222222222 22 2 7 7 7 5 7 7 888 77 7 0 0 0 77777 7 888 7 7 3333 22 22 5555555 7 4 7 7 7 1 4 0 7 666 0 7 7 99 1 0 888 5555555 0 0 2 0 6 0 888 99 44444444444444444 999999 4 4 11 11 4 33333 55 9999999 0 0 4 6 44444 5 5555555555555555555555555555555555555555555555555555 0 11111111 11 77 77777777 888 4 4 444 11 7 4 22 7 22 0 0 9 11111 000 0 99 5 0 0 88888888888 0 4 00000 0 444444 999999999 44 0 9999999999999 4444444 00000 99 7 99 7 7 88
consensus : NNNNNTACGATTTACGTATCACTT---CACCG--GAGACTT-AATTTTCAACATT-ATCACAA-ACGGTCGAGTGAA------AT--A--GTTTGTTGAAATATTACATAAACGAT-CGTCGTAC-----ATATAGGC----------CTATA--GCGTACAAAACGGTC-GT-GCGAA-TAGCTGATCAAC-AGTGAT-TATAGTCATTA-CGATAT-GTACACAACCGTTGTGCAA-CACTA-CCGATTCAT--TCGAACTATAAAA-T-AAAAACT-GACGTAATA----AA-CCACTCACAT----TTC-ATCGGCATTCAA-------A-TT-TTCATTG-T-CGTGT-GC-GACCCACGGGTGCTT-CTTACCGA-TCTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATG-ATCACGAT-GCTTTTGACAGCT-CATAAAAGATGGCGTTCGT-ATATCGCGCCTAAATTGGTCTTCCCAGAATGCAATAGCCCG-AGCCCGAACCCGACGC-TT-ATAT-ATACATACGAA-C---CCG-ATCGTTTTA-TTGCCAGAATGTT-ACC-A--AAATTTG--TTGC--AGCTAGT--TG--GCAA-TA-TTA-CA-AAC-TGTATGCTGATAGCTGATTCACATAGGAATG-TTG-C-ANAA-AATTTTTCT-GGCAG--TATTGCCAG-AA---T----G--TTACC-AGA-AGTTGT-TGCAGCTA-G-TGG--CA-AT---A---TATT-TACTTCA--C---TCTTTC-TGG-CA--GTAT--TGCCA-GAA-T---GTTAC--C---A---G-AA-GTTGTTG-CAGC-----TAGT---GC---A-A----T-A-T-TT------C---ACTC--------------TTTC-TGGCA--------GTATTG--CCGNAAT--G-TT-ACC---A-G-AA-GTTG--TCG-CAGC--TAGTG--GCAAT-ATTT-CACT-----TGTTCTCA-AAATCTGGT--CTCTGGC-A-A--CAA-A----AAA-TGT-G---TTGC-TGCAA------TGTTG---------CCGTAA--TATTCGC-GG----------CGAT---A-T-T--G--C-TG-C--AACA-A-TTTTACTTT--GGTAA
Reference ( family-580 ) : NNNNNTACGATTTACGTATCACTT---CACCG--GAGACTT-AATTTTCAACATT-ATCACAA-ACGGTCGAGTGAA------AT--A--GTTTGTTGAAATATTACATAAACGAT-CGTCGTAC-----ATATAGGC----------CTATA--GCGTACAAAACGGTC-GT-GCGAA-TAGCTGATCAAC-AGTGAT-TATAGTCATTA-CGATAT-GTACACAACCGTTGTGCAA-CACTA-CCGATTCAT--TCGAACTATAAAA-T-AAAAACT-GACGTAATA----AA-CCACTCACAT----TTC-ATCGGCATTCAA-------A-TT-TTCATTG-T-CGTGT-GC-GACCCACGGGTGCTT-CTTACCGA-TCTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATG-ATCACGAT-GCTTTTGACAGCT-CATAAAAGATGGCGTTCGT-ATATCGCGCCTAAATTGGTCTTCCCAGAATGCAATAGCCCG-AGCCCGAACCCGACGC-TT-ATAT-ATACATACGAA-C---CCG-ATCGTTTTA-TTGCCAGAATGTT-ACC-A--AAATTTG--TTGC--AGCTAGT--TG--GCAA-TA-TTA-CA-AAC-TGTATGCTGATAGCTGATTCACATAGGAATG-TTG-C-ANAA-AATTTTTCT-GGCAG--TATTGCCAG-AA---T----G--TTACC-AGA-AGTTGT-TGCAGCTA-G-TGG--CA-AT---A---TATT-TACTTCA--C---TCTTTC-TGG-CA--GTAT--TGCCA-GAA-T---GTTAC--C---A---G-AA-GTTGTTG-CAGC-----TAGT---GC---A-A----T-A-T-TT------C---ACTC--------------TTTC-TGGCA--------GTATTG--CCGNAAT--G-TT-ACC---A-G-AA-GTTG--TCG-CAGC--TAGTG--GCAAT-ATTT-CACT-----TGTTCTCA-AAATCTGGT--CTCTGGC-A-A--CAA-A----AAA-TGT-G---TTGC-TGCAA------TGTTG---------CCGTAA--TATTCGC-GG----------CGAT---A-T-T--G--C-TG-C--AACA-A-TTTTACTTT--GGTAA
gi|1 : TACGATTTATGTATCAATCGGACACTGTCGAGACTT-AATTTTCAACATT-ATCACAA-ACAGTCGAGTGAA------ATTAATTGTTTGTTGAAATATTACATAAACGAT-CGTCGTAC-----ATATATGC----------CTATA--GCGTACAAAACGGT--GT-GCGAA-TAGCTGATCAACCAGTGAT-TATAGTCATTA-CGATAT-GTACACAACCATTGTGCAAACACTAACCAATTCATATTCGAACTATAAAA-T-AAAAACT-GACGTAATA----AA-TCACTCACAT----TTC-GTCGGCACTCAA-------AATT-TCCATTG-T-CGTGT-GC-GACCCATGGGTGCTT-CTTACAAA-TCTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATTCATCATGAT-GCTTTTGACAGCT-CATAAAAGATGGCGTTCAT-ATATCGCGCCTAA-TTGGTCTTCCCAGAATGCAATAGCCCG-AGCCCGAACCCGACGC-TT-ATAT-ATACATACGAA-C---CCG-ATCATTTTA-TTGCCAGAATGTTTACC-A--AAATTTG--TTGC--AGCTAGT--TG--GCAA-TA-TTA-CA-AAC-TGTATGCTGATAGCTGATTCACATAGGAATG-TTG-C-AGAA-AATTTTTCT-GGCAG--TATTGCCAG-AA---T----G--TTACC-AGA-AGTTGT-TGCAGCTA-G-TGG--CA-AT---ACG-TATTGTACTTCA--C---TCTTTC-TGG-CA--GTAT--TGCCA-GAA-----GTAAC--C---A---G-AA-GTTGTTG-CAGC-----TAGT---GC---A-A----T-A-T-TT------C---ACTC--------------TTTC-TGGCA--------GTATTG--CCAGAAT--G-TT-ACC---A-G-AA-GTTG--TTG-CAGC--TAGTG--GCAAT-ATTT-CACT-----TGTTCTCA-AAATCTGGT--CTCTGGC-A-A--CAA-A----AAA-TGT-G---TTGCTTGCAA------TGTTG---------CCGTAA--TATTCGCGGG----------CGAT---A-T-TTGG--CGTG-C--AACA-A-TTTTACTTT--GGTAA
gi|10 : gaaatACCG--GAGACTA-AATGTTCAACTTTTATCACATTACGGCTGTGTGAATACTGAAT--A--GTCTGTTGAAATATTACATACACGAC-CGTCGTGCATTATATATAGACAGTTGAAACATTATATTGCGTACAAGACGGTC-AT-GCAAA-TAGCTGTTCGAC-A
gi|12 : tACGATTTACGTATCAC--------CG--GAGACTT-AATTTCCAACATT-ATCAC-A-ACAGTCGAGTG-A------AT--A--GTT
gi|14 : ttaT-ATTT-CACT------GT------AAATCTGGC--ATCTGGC-A-A--CAA-A----ATA-TAT-G---TTGC-
gi|15 : TATT--GCGTACACCGCGGTC-GT-GCGAA-TAGCTGTTCAAG-AGatg
gi|16 : ctata-ATATCGCGCC-------GTCTTCCCAGAATGCAATAGCCTG-AGCCCGA
gi|2 : gTACAATTTACGTATCACTT---TACCG--GAGACTA-AATTTTCAAC-TT-ATCA-AA-GCGGTCGAGTGAA-------T--A--GTTTGTTGAAATATTACATAAACGACACGTCGTAC-----ATATAGGC----------CTATA--GCGTACAAAACGGTC-GTCACGA--TAGTTGATTAAC-AGTGAT-TA--GTCATTAACGATATCGTACACAACAGTTGTGCAA-CACTA-CCAATTCAT--TCGAACTATAAAAATGAAAAACT-GACGTAATA----AAACCACTCACAT----TTC-ATCCGCAT-CAA-------A-TT-TTCATTGGT-CGTGTCGC-GACCCACGGGTGCTTTCTTACCGA-TCTTCTCTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATG-ATCGCGAT-GCTTTTGACAGCTCCATGAAACATGGCGTTCGTAATATCGCGCCT-AATTGGTCTTCCCAGAATGCAATAGCCCACAG-CCGAACCCGACGCTTT-ATAT-ATACATA-GAA-C---CCGAATCATTTTATTTGCCAGAATGTT-ACCAA--AAATTTG---TGC--AGCT-GT--C----CAA-TA-TTA-CA-AACGTGTATGCTGATAGCTGAATCACATAGGAG-G-TTG-CAAGAA-AATTTTTCT--GCAG--TATTGCCAG-AA---T----A--TTACC-AGA-AGTTGT-TGCAGC-A-G-T-G--CA---------------TATTTCA--C---TCTTTC-T-G-CA--GTAT--TGCCA-GAA-T---GTTACCAC---A---G-AA-GTTGTTG-CAGC-----TAGTG--GC---A-A----T-A-T-TT------C---ACTC--------------TTTC-TGGCA--------GTATTG--CCAGAAT--G-TT-ACC---ACG-AA-GTTG--TTG-CAGC--TAGTG--GCAAT-ATTT-CACT-----TG-TCTCA-AAATCTGGT--TTCT-GC-A-A--CAA-A----CAA-TGTGG---TTGC-TGCAA------TGTTG---------CCGTAA--TA-TCGC-GG----------CGATCTAA-TCT--GCAC-TGCC--AACA-A-TTTTACTTT--GGTAA
gi|3 : tataTTACATATCAC--------CG--CAGACTTTAATTTTCAACATT-A-CACAA--CAGTCGAGTGAA------A------GTTTGTTGAAATATTACATAAACGAT-CGTCGTAC-----ATATAGGC----------CTATA--GCGTACAAA-CGGTCCGTAGCGAAATAGCTGATCAAC-AGTGACGTATAGTCATTA-CGATAT-GTACACAACCGTTGTGCCA--ACTA-CCGATTCAT--TCGAACTATAAAA-T-AAAA-CT-GACGTAATA----AA-CCACTCACAT----TTCGATCGGCATCCAA-------A-AT-TTCATTG-TTCGTGT-GGAGACCCATGGGTGCTT-CTTGCCAA-TCTTCTT-ATCTGT--------------AGAAAC--CGTGG-ACTGTTT-ACGATG-ATCATGAT-GCTTTTGACAGCT-CATAAAAGATGGCGTTCGT-ATATCGCGCCTAAATTGGTCTTCCCAGAAT-CAATAGCCCG-AGCCCGAACCCGACGC-TTAATATAATACTTACGAA-TCGACCG-ATCG-GTTA-TTGCCAGAATGTT-ACC-ATCAAATTGT--TTGCCAAGCTAGT--GG--GC-A-TA-TTATCAGAAC-TGTATGCTGATAGCTGATCCACATAGG-ATGTTTG-C-ATAATAAATTTTCTGGGCAG--TA--GCCAGAAA---T----G--TTACCTAGA-AGTTGT-TCCAGCTA-G-TTG--T--GC---A---TATT----TTCA--A----CTTTCGTGG--A--GTATTGTGCCA--AA-TG--GTTAC--CGTAA---GTAA-GTT-TTGCCAGC-----TATG---GC-----A----T-A-T-TT------C----CTT--------------GTTC-Tgg
gi|3 : gaAA-TACTTA-CG-AAT-CG---ACCGATCGGTTATTGCCA---GAATG-TTA-CCATCA-AATTGTT-T-GCCAAGCTAGTG--GG-CA---T----A--TTATC-AGA-A-CTGTATGCTGATA-GCTGATCCACAT---AGGATGTT-TGCATAA--TAAAT-TTTC-TGGGCA--GTA----GCCA-GAAAT---GTTAC--CT--A---G-AA-GTTGTTC-CAGC-----TAGTTGTGC---ATA----T---T-TT------C---AA-C--------------TTTCGTGG-A--------GTATTGTGCC-AAAT--GGTT-ACCGTAA-GTAA-GTTT--TGC-CAGC--TA-TG--GCA-T-ATTT-C-CT-----TGTTCTCA-AAATCTCGTGCCTCTCGCTG-G--CAC-A----AAATTGT-G---TTGC-TGCGATATTATTGTTGTTATTTTCTTCGTAA--TA-TCGCGGG----------CGAT---ACT-T--G--C-CG-C--AAAA-ATTTTTACTTTTGGATAAcaaaatctcgtgcctctcgctggcacaaaattgtgttgctgcgatattattgttgttattttcttcgtaatatcgcgggcgatacttgccgcaaaaatttttacttttggataa
gi|4 : gattacatatcaccgcagactttaattttcaacattacacaacagtcgagtgaaagtttgttgaaatattacataaacgatcgtcgtacatataggcctatagcgtacaaacggtccgtagcgaaatagctgatcaacagtgacgtatagtcattacgatatgtacacaaccgttgtgccaactaccgattcattcgaactataaaataaaactgacgtaataaaccactcacatttcgatcggcatccaaaatttcattgttcgtgtggagacccatgggtgcttcttgccaatcttcttatctgtagaaaccgtggactgtttacgatgatcatgatgcttttgacagctcataaaagatggcgttcgtatatcgcgcctaaattggtcttcccagaatcaatagcccgagcccgaacccgacgcttaatatT---CACCA--GAGACTT-AATTTTCAACATT-ATCA-AA-ACAGTCGAGTGAA-------T--A--GTTTGTTGAAATATTACATAAACGAT-CGTCGTAC-----ATATAGGC----------CTATA--GCGTACAAAACGGTC-GT-GCAAA-TAGCTGATCAAC-AGTGAT-TATAGTC-TTA-CGATAT-GTACACAACCGTTGTGCAA-CACTA-CCGATTCAT--TCGAACTATAAA--T-AAAA-CT-GACGTAATA----AA-CCACTCACAT----TTC-ATCGGCAT-CAA-------A-TT-TTCATTG-T-CGTGT-GC-GACCCATGGGTG-TT-CTTACCAATTTTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATG-ATCATGAT-GCTTTTGACAGCT-CATAAAAGATGGCGTTCGT-ATATCGCGCCTAAATTGGTCTTCCCAGAATGCAATAGCCCG-AGCCCGAA-CCGACGC-TT-ATAT-ATACTTACG-A-C---CCG-ATCGGTTTA-TTGCCAGAATGTT-ACC-A--AAATTTG--TTGC--AGCTAG---TG--GCAA-TA-TTA-CA-AAC-TGTATGCTGATAGCTGA-TCACATAGG-ATG-TTGCC-ATAA-ATTTTTTCT-GGCAG--TATTGCCAG-AA---T----G--TTACC-AGA-AGTTGT-TGCAGCTA-G-TGG--CA-A-------------TACTTCA--C---TCTCTC-TGG-CA--GTAT--TGCCA-GAA-T---GTTAC--C---A---G-AA-GTTGTTG-CAGC-----TAGTG--GC---A-A----T-ATT-TT------C---ACTTGTCTCAAAATCTGGTCTC-TGGCAACAAAAATGTGTTG--CTGCAAT--G-TT-GCC---G-T-AA---TA--TCG-CGGCGATATTGCTGCAACAATTT-TACT-----T
gi|5 : cataACACAACCGTTGTGCA--CACTA-CCAATTCAT--TCGAACTATAAA--T-AAAA-CT-GACGTAATA----AA-CCACTCACAT----TTC-ATCGGCAT-CAA-------A-TT-TTCATTG-T-CGTGT-GC-GACCCATGGGTGCTT-CTTACCGA-TCTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATG-ATCATGAT-GCTTTTGACAG-T-CATAAAAGATGGCGTTCGT-ATATCGCGCCT-ATTTGGTCTTCCCAGAATGCAATAGCCC--AG-CCGAACCCGACGC-TT-ATAT-ATACATACGAA-C---CCG-ATAATTTTA-TTGCCAGAATGTT-ACC-A--AAATTTG--TTGC--AGCTAG---TG--GCAA-TA-TTA-CA-AAC-TGTATGCTGATAGCTGA-TCACATAGG-ATG-TTGCC-AGAA-ATTTTTTCT-GGCAG--TATTGCCAG-AA---T----G--TTACC-AGA-AGTTGT-TGCAG-TA-G-TGG--CA-AT--------------CTTCA--C---TCTTTC-TGG-CA--GTAT--TGCCA-GAA-T---GTTAC--C---A---G-AA-GTT-TTG-CAGC-----TAG---------------------------------------------------------TGGCA--------ATATTG--CCAGAAT--G-TTAACA---A-G-AA-GTTG--TTG-CAGC--TAGTG--GCAAT-ATTT-CACT-----TG-TCTCA-AAATCTGGT--CTCTGGC-A-A--T---A----AAA-TGT-T---TTGC-TGCAA------TGTTG---------CCGCAA--TA--CGC-GG----------CGAT---A-T-T--G--C-TG-C--AACA-A-TTTTACtgg
gi|6 : G--CATTGCAAG-AA---TACTAG--GTACC-ACATAATAGT-TGGAAATGCG-TTG--CA-GT---AA--TATT--GCCGCAAAT---CCTTTC-TGG-CA--ATAT--TGCCGCAAA-TCTAATTAG--C---ATACG-AA-AT--CTG-ATAT-----TACC---AC---A-A----T-A-T-TGCCGCAAC---ATGC--------------TTTG-CAGCA--------GTACTG--CCGCAACTAG-TT--TC---A-A-AA-TATGCTTTG-CAGCAATATTGCTGCAAC-ACTT-CTCTGGCAATATTGCCGCAAATCTAAT--TTACATA-A-ATTTAA-ATACGAAA-TCT-GATATTAC-CGCAA------TATTG---------CTGCAATGTATTGCC-AGAATGTTACTACAAT---A-T-T--G--C-TG-C--AATA-A-T
gi|6 : gttTTTG-CGG-CA--ATAT--TGCCA-GA---------------------G-AA-GT-GTTG-CAGCAATATTGCT---GC---A-AAGCAT-A-T-TT------TGAAACTA--------------GTTG-CGGCA--------GTACTG--CTGCAA--------------A-G-CA---TG--TTG-C---------G--GCAAT-ATTG----------TGGT---A-ATATCAGAT--TTC--GT-ATG--CTA-ATT--AGA-T-------TTGC-GGCAA------TATTG---------CCAGAAAGGATTTGC-GG----------CAAT---A-T-T--A--C-TG-C--AACGCA-TTTgccagaagatatcgccagaagggctgtatttcaataaggg
gi|6 : gttgcattgcaagaatactaggtaccacataatagttggCATACGAAAT---CTG-AT------A-TTACCACAATATT-GCC-G--CAACATGCTTTGC--AGC-AGTACTGCCGCAACTAGTTT-CA-AA---ATATGCT--TTGC----------AGCAATA-TTG-CTGCAA-CACTTCTCT-GGCAA--TATTGCCGC-AAATCT----AATTTAC--ATA-AATT-----TAAATA-C---G--AA-ATCTGA---TATT--ACCGCA--A---TATTGC-TG--CAATGTAT--TGCCA-GAA-T---GTTAC--T---A---C-AATATTGCTG-CAA------TAAT---GC---tctaatttacataaatttaaatacgaaatctgatattaccgcaatattgctgcaatgtattgccagaatgttactacaatattgctgcaataatgccagaagatatcgccagaagggctgtatttcaataaggg
gi|6 : gttgcattgcaagaatactaggtaccacataatagttggaaatgcgttgcagtaatattgccgcaaatcctttctggcaatattgccgcaaatctaattagA-T---ATTAC--C---G---C-AATATTGCTG-CAATG----TATT---GCCAGA-A----T-G-T-T-----------ACT----------------------ACA--------ATATTG--CTGCAAT--A-AT-GCC---A-G-AA-GATA--TCGCCAG----AAGG--GCTGT-ATTT-CAcagaagatatcgccagaagggctgtatttcaataaggg
gi|7 : gttgcattgcaagaatactaggtaccacataatagttggaaatgcgttgcagtaatattgccgcaaatcctttctggcaatattgccgcaaatctaattagcatacgaaatctgatattaccacaatattgccgcaacatgctttgcagcagtactgccgcaactagtttcaaaatatgctttgcagcaatattgctgcaacacttctctggcaatattgccgcaaatctaatttacataaatttaaatacgaaatctgA-T-AAAAATTTGATGTAATACAGAAA-CCTGCAACATGTTTTTC-ATCAGCATTCAACTCCCTCA-TTCTTCGCTA-C-AGTGA-GC-TTTTCACGGGTGCTT-CTTATCGA-TCTTCTCCATCTGTGGACTCAATAGTCAGGAAACGGCGTGGGCGTGT-------TG-GCCACGATAGCTTT--ATAGAT-C--CAAAGATGGCATTTGT-ataaggg
gi|8 : tacgaaatataaaaaggcactactaccaccaagttgacataggaattttctaatgcacagatatttttaggagtccaaataatcctttggcactTTGTGA-CAGCC----TAGTT--GC---A-A----TTA-TCTT------C---ACTC--------------TTTC-TTGCA---------TACT---CCAGAAT--G-T--ACC---A-G-AACGTTG--TC--CA-C--TAGTG---CAAT-ATTTTCACT-----TGT-CTCA-AAATCTGG---CTCTGCC-A-AA-CACTA----AAA-TGT-G---TTGC-TGCAA------TGTTT---------CCGTAAT-TATCCTC--G----------CGA----A---T--G--C--G-CAAAACA-A-TTTTACTTT--GGTttttgccgctattctctacccaattcgcatagtgtagaacccg
gi|9 : CAGTCGAGTGAA-------T--A--GTTTGTTGAAATTTTGCATAAACGAT-CGTCGTAC-----ATATAAGC----------CTATA--GCGTACAAAACGGTC-GT-GCGAA-TAGCTGATCAAC-AGTGAT-TATAGTCATTG-CGATAT-GTAtaagt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AGTTTCAATCGCAACTTCTCCTTCTTCCGGTTACGGTACATGACACTATNNNNNNNNNNNNNNNNNNNNNNNNNAGATGAACATTACTTGGATCTTATTCCGTATAAACA
Unaligned ( gi|13 ): TTCTTCTTCTTCCGGTTACGGACATGACACTTATAACTGTGTATTTT
Unaligned ( gi|17 ): CCATGCCTCAATTTTAAATTTGCATAAATTTTTATATG
Alignments
lowQualScore : 333333 3333333333333 11111 2222222222 1 11 11 1 1111 1111 1 2222222 33333333333333 111 11111 111 2222222 1 1 1 111 1111111 66666666666666666 111111 11111 1111111 11111 4444444444444444444444444444444444444444444444444444 11111111 111 11 11 11111 111 11111111111 11111 111111 222222222 22 1 2222222222222 1111111 11
lowQualScore : 666666 99 6 3 6 99999 1 6666666666666 6 66666 9999999999 77 0 5 1 5 5 8 0 0 8 8 88 8 11 44 6 5 6 4444 6 4444 6 8 1111111 6 6 666 6 6 0 6 6 1 99999999999999 99 3 6 0 6 2 6 5 333 77 6 8 8 8 33333 6 111 6 6 9999 99 99 1111111 5 1 5 5 5 2 1 2 5 888 1 5 5 66 0 5 888 3333333 5 5 0 5 5 5 777 66 00000000000000000 555555 4 4 66 66 4 33333 55 2222222 4 8 1 3 66666 0 4444444444444444444444444444444444444444444444444444 4 66666666 66 33 77777777 777 4 4 000 66 1 4 22 5 22 4 4 0 11111 222 5 66 4 5 5 99999999999 5 1 00000 5 666666 222222222 11 2 5555555555555 0000000 88888 55 5 77 5 5 33
lowQualScore : ...... .. . . . ..... . ............. . ..... .......... .. . . . . . . . . . . .. . .. .. . . . .... . .... . . ....... . . ... . . . . . . .............. .. . . . . . . . ... .. . . . . ..... . ... . . .... .. .. ....... . . . . . . . . . ... . . . .. . . ... ....... . . . . . . ... .. ................. ...... . . .. .. . ..... .. ....... . . . . ..... . .................................................... . ........ .. .. ........ ... . . ... .. . . .. . .. . . . ..... ... . .. . . . ........... . . ..... . ...... ......... .. . ............. ....... ..... .. . .. . . ..
lowQualScore : 333333 22 7 5 7 55555 4 6666666666666 7 77777 2222222222 99 1 7 4 7 7 0 8 8 0 0 88 0 00 00 7 5 7 2222 7 2222 7 0 7777777 7 7 888 7 7 7 7 7 7 22222222222222 22 2 7 7 7 5 7 7 888 77 7 0 0 0 77777 7 888 7 7 3333 22 22 5555555 7 4 7 7 7 1 4 0 7 666 0 7 7 99 1 0 888 5555555 0 0 2 0 6 0 888 99 44444444444444444 999999 4 4 11 11 4 33333 55 9999999 0 0 4 6 44444 5 5555555555555555555555555555555555555555555555555555 0 11111111 11 77 77777777 888 4 4 444 11 7 4 22 7 22 0 0 9 11111 000 0 99 5 0 0 88888888888 0 4 00000 0 444444 999999999 44 0 9999999999999 4444444 00000 99 7 99 7 7 88
consensus : NNNNNTACGATTTACGTATCACTT---CACCG--GAGACTT-AATTTTCAACATT-ATCACAA-ACGGTCGAGTGAA------AT--A--GTTTGTTGAAATATTACATAAACGAT-CGTCGTAC-----ATATAGGC----------CTATA--GCGTACAAAACGGTC-GT-GCGAA-TAGCTGATCAAC-AGTGAT-TATAGTCATTA-CGATAT-GTACACAACCGTTGTGCAA-CACTA-CCGATTCAT--TCGAACTATAAAA-T-AAAAACT-GACGTAATA----AA-CCACTCACAT----TTC-ATCGGCATTCAA-------A-TT-TTCATTG-T-CGTGT-GC-GACCCACGGGTGCTT-CTTACCGA-TCTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATG-ATCACGAT-GCTTTTGACAGCT-CATAAAAGATGGCGTTCGT-ATATCGCGCCTAAATTGGTCTTCCCAGAATGCAATAGCCCG-AGCCCGAACCCGACGC-TT-ATAT-ATACATACGAA-C---CCG-ATCGTTTTA-TTGCCAGAATGTT-ACC-A--AAATTTG--TTGC--AGCTAGT--TG--GCAA-TA-TTA-CA-AAC-TGTATGCTGATAGCTGATTCACATAGGAATG-TTG-C-ANAA-AATTTTTCT-GGCAG--TATTGCCAG-AA---T----G--TTACC-AGA-AGTTGT-TGCAGCTA-G-TGG--CA-AT---A---TATT-TACTTCA--C---TCTTTC-TGG-CA--GTAT--TGCCA-GAA-T---GTTAC--C---A---G-AA-GTTGTTG-CAGC-----TAGT---GC---A-A----T-A-T-TT------C---ACTC--------------TTTC-TGGCA--------GTATTG--CCGNAAT--G-TT-ACC---A-G-AA-GTTG--TCG-CAGC--TAGTG--GCAAT-ATTT-CACT-----TGTTCTCA-AAATCTGGT--CTCTGGC-A-A--CAA-A----AAA-TGT-G---TTGC-TGCAA------TGTTG---------CCGTAA--TATTCGC-GG----------CGAT---A-T-T--G--C-TG-C--AACA-A-TTTTACTTT--GGTAA
Reference ( family-580 ) : NNNNNTACGATTTACGTATCACTT---CACCG--GAGACTT-AATTTTCAACATT-ATCACAA-ACGGTCGAGTGAA------AT--A--GTTTGTTGAAATATTACATAAACGAT-CGTCGTAC-----ATATAGGC----------CTATA--GCGTACAAAACGGTC-GT-GCGAA-TAGCTGATCAAC-AGTGAT-TATAGTCATTA-CGATAT-GTACACAACCGTTGTGCAA-CACTA-CCGATTCAT--TCGAACTATAAAA-T-AAAAACT-GACGTAATA----AA-CCACTCACAT----TTC-ATCGGCATTCAA-------A-TT-TTCATTG-T-CGTGT-GC-GACCCACGGGTGCTT-CTTACCGA-TCTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATG-ATCACGAT-GCTTTTGACAGCT-CATAAAAGATGGCGTTCGT-ATATCGCGCCTAAATTGGTCTTCCCAGAATGCAATAGCCCG-AGCCCGAACCCGACGC-TT-ATAT-ATACATACGAA-C---CCG-ATCGTTTTA-TTGCCAGAATGTT-ACC-A--AAATTTG--TTGC--AGCTAGT--TG--GCAA-TA-TTA-CA-AAC-TGTATGCTGATAGCTGATTCACATAGGAATG-TTG-C-ANAA-AATTTTTCT-GGCAG--TATTGCCAG-AA---T----G--TTACC-AGA-AGTTGT-TGCAGCTA-G-TGG--CA-AT---A---TATT-TACTTCA--C---TCTTTC-TGG-CA--GTAT--TGCCA-GAA-T---GTTAC--C---A---G-AA-GTTGTTG-CAGC-----TAGT---GC---A-A----T-A-T-TT------C---ACTC--------------TTTC-TGGCA--------GTATTG--CCGNAAT--G-TT-ACC---A-G-AA-GTTG--TCG-CAGC--TAGTG--GCAAT-ATTT-CACT-----TGTTCTCA-AAATCTGGT--CTCTGGC-A-A--CAA-A----AAA-TGT-G---TTGC-TGCAA------TGTTG---------CCGTAA--TATTCGC-GG----------CGAT---A-T-T--G--C-TG-C--AACA-A-TTTTACTTT--GGTAA
gi|1 : TACGATTTATGTATCAATCGGACACTGTCGAGACTT-AATTTTCAACATT-ATCACAA-ACAGTCGAGTGAA------ATTAATTGTTTGTTGAAATATTACATAAACGAT-CGTCGTAC-----ATATATGC----------CTATA--GCGTACAAAACGGT--GT-GCGAA-TAGCTGATCAACCAGTGAT-TATAGTCATTA-CGATAT-GTACACAACCATTGTGCAAACACTAACCAATTCATATTCGAACTATAAAA-T-AAAAACT-GACGTAATA----AA-TCACTCACAT----TTC-GTCGGCACTCAA-------AATT-TCCATTG-T-CGTGT-GC-GACCCATGGGTGCTT-CTTACAAA-TCTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATTCATCATGAT-GCTTTTGACAGCT-CATAAAAGATGGCGTTCAT-ATATCGCGCCTAA-TTGGTCTTCCCAGAATGCAATAGCCCG-AGCCCGAACCCGACGC-TT-ATAT-ATACATACGAA-C---CCG-ATCATTTTA-TTGCCAGAATGTTTACC-A--AAATTTG--TTGC--AGCTAGT--TG--GCAA-TA-TTA-CA-AAC-TGTATGCTGATAGCTGATTCACATAGGAATG-TTG-C-AGAA-AATTTTTCT-GGCAG--TATTGCCAG-AA---T----G--TTACC-AGA-AGTTGT-TGCAGCTA-G-TGG--CA-AT---ACG-TATTGTACTTCA--C---TCTTTC-TGG-CA--GTAT--TGCCA-GAA-----GTAAC--C---A---G-AA-GTTGTTG-CAGC-----TAGT---GC---A-A----T-A-T-TT------C---ACTC--------------TTTC-TGGCA--------GTATTG--CCAGAAT--G-TT-ACC---A-G-AA-GTTG--TTG-CAGC--TAGTG--GCAAT-ATTT-CACT-----TGTTCTCA-AAATCTGGT--CTCTGGC-A-A--CAA-A----AAA-TGT-G---TTGCTTGCAA------TGTTG---------CCGTAA--TATTCGCGGG----------CGAT---A-T-TTGG--CGTG-C--AACA-A-TTTTACTTT--GGTAA
gi|10 : gaaatACCG--GAGACTA-AATGTTCAACTTTTATCACATTACGGCTGTGTGAATACTGAAT--A--GTCTGTTGAAATATTACATACACGAC-CGTCGTGCATTATATATAGACAGTTGAAACATTATATTGCGTACAAGACGGTC-AT-GCAAA-TAGCTGTTCGAC-A
gi|12 : tACGATTTACGTATCAC--------CG--GAGACTT-AATTTCCAACATT-ATCAC-A-ACAGTCGAGTG-A------AT--A--GTT
gi|14 : ttaT-ATTT-CACT------GT------AAATCTGGC--ATCTGGC-A-A--CAA-A----ATA-TAT-G---TTGC-
gi|15 : TATT--GCGTACACCGCGGTC-GT-GCGAA-TAGCTGTTCAAG-AGatg
gi|16 : ctata-ATATCGCGCC-------GTCTTCCCAGAATGCAATAGCCTG-AGCCCGA
gi|2 : gTACAATTTACGTATCACTT---TACCG--GAGACTA-AATTTTCAAC-TT-ATCA-AA-GCGGTCGAGTGAA-------T--A--GTTTGTTGAAATATTACATAAACGACACGTCGTAC-----ATATAGGC----------CTATA--GCGTACAAAACGGTC-GTCACGA--TAGTTGATTAAC-AGTGAT-TA--GTCATTAACGATATCGTACACAACAGTTGTGCAA-CACTA-CCAATTCAT--TCGAACTATAAAAATGAAAAACT-GACGTAATA----AAACCACTCACAT----TTC-ATCCGCAT-CAA-------A-TT-TTCATTGGT-CGTGTCGC-GACCCACGGGTGCTTTCTTACCGA-TCTTCTCTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATG-ATCGCGAT-GCTTTTGACAGCTCCATGAAACATGGCGTTCGTAATATCGCGCCT-AATTGGTCTTCCCAGAATGCAATAGCCCACAG-CCGAACCCGACGCTTT-ATAT-ATACATA-GAA-C---CCGAATCATTTTATTTGCCAGAATGTT-ACCAA--AAATTTG---TGC--AGCT-GT--C----CAA-TA-TTA-CA-AACGTGTATGCTGATAGCTGAATCACATAGGAG-G-TTG-CAAGAA-AATTTTTCT--GCAG--TATTGCCAG-AA---T----A--TTACC-AGA-AGTTGT-TGCAGC-A-G-T-G--CA---------------TATTTCA--C---TCTTTC-T-G-CA--GTAT--TGCCA-GAA-T---GTTACCAC---A---G-AA-GTTGTTG-CAGC-----TAGTG--GC---A-A----T-A-T-TT------C---ACTC--------------TTTC-TGGCA--------GTATTG--CCAGAAT--G-TT-ACC---ACG-AA-GTTG--TTG-CAGC--TAGTG--GCAAT-ATTT-CACT-----TG-TCTCA-AAATCTGGT--TTCT-GC-A-A--CAA-A----CAA-TGTGG---TTGC-TGCAA------TGTTG---------CCGTAA--TA-TCGC-GG----------CGATCTAA-TCT--GCAC-TGCC--AACA-A-TTTTACTTT--GGTAA
gi|3 : tataTTACATATCAC--------CG--CAGACTTTAATTTTCAACATT-A-CACAA--CAGTCGAGTGAA------A------GTTTGTTGAAATATTACATAAACGAT-CGTCGTAC-----ATATAGGC----------CTATA--GCGTACAAA-CGGTCCGTAGCGAAATAGCTGATCAAC-AGTGACGTATAGTCATTA-CGATAT-GTACACAACCGTTGTGCCA--ACTA-CCGATTCAT--TCGAACTATAAAA-T-AAAA-CT-GACGTAATA----AA-CCACTCACAT----TTCGATCGGCATCCAA-------A-AT-TTCATTG-TTCGTGT-GGAGACCCATGGGTGCTT-CTTGCCAA-TCTTCTT-ATCTGT--------------AGAAAC--CGTGG-ACTGTTT-ACGATG-ATCATGAT-GCTTTTGACAGCT-CATAAAAGATGGCGTTCGT-ATATCGCGCCTAAATTGGTCTTCCCAGAAT-CAATAGCCCG-AGCCCGAACCCGACGC-TTAATATAATACTTACGAA-TCGACCG-ATCG-GTTA-TTGCCAGAATGTT-ACC-ATCAAATTGT--TTGCCAAGCTAGT--GG--GC-A-TA-TTATCAGAAC-TGTATGCTGATAGCTGATCCACATAGG-ATGTTTG-C-ATAATAAATTTTCTGGGCAG--TA--GCCAGAAA---T----G--TTACCTAGA-AGTTGT-TCCAGCTA-G-TTG--T--GC---A---TATT----TTCA--A----CTTTCGTGG--A--GTATTGTGCCA--AA-TG--GTTAC--CGTAA---GTAA-GTT-TTGCCAGC-----TATG---GC-----A----T-A-T-TT------C----CTT--------------GTTC-Tgg
gi|3 : gaAA-TACTTA-CG-AAT-CG---ACCGATCGGTTATTGCCA---GAATG-TTA-CCATCA-AATTGTT-T-GCCAAGCTAGTG--GG-CA---T----A--TTATC-AGA-A-CTGTATGCTGATA-GCTGATCCACAT---AGGATGTT-TGCATAA--TAAAT-TTTC-TGGGCA--GTA----GCCA-GAAAT---GTTAC--CT--A---G-AA-GTTGTTC-CAGC-----TAGTTGTGC---ATA----T---T-TT------C---AA-C--------------TTTCGTGG-A--------GTATTGTGCC-AAAT--GGTT-ACCGTAA-GTAA-GTTT--TGC-CAGC--TA-TG--GCA-T-ATTT-C-CT-----TGTTCTCA-AAATCTCGTGCCTCTCGCTG-G--CAC-A----AAATTGT-G---TTGC-TGCGATATTATTGTTGTTATTTTCTTCGTAA--TA-TCGCGGG----------CGAT---ACT-T--G--C-CG-C--AAAA-ATTTTTACTTTTGGATAAcaaaatctcgtgcctctcgctggcacaaaattgtgttgctgcgatattattgttgttattttcttcgtaatatcgcgggcgatacttgccgcaaaaatttttacttttggataa
gi|4 : gattacatatcaccgcagactttaattttcaacattacacaacagtcgagtgaaagtttgttgaaatattacataaacgatcgtcgtacatataggcctatagcgtacaaacggtccgtagcgaaatagctgatcaacagtgacgtatagtcattacgatatgtacacaaccgttgtgccaactaccgattcattcgaactataaaataaaactgacgtaataaaccactcacatttcgatcggcatccaaaatttcattgttcgtgtggagacccatgggtgcttcttgccaatcttcttatctgtagaaaccgtggactgtttacgatgatcatgatgcttttgacagctcataaaagatggcgttcgtatatcgcgcctaaattggtcttcccagaatcaatagcccgagcccgaacccgacgcttaatatT---CACCA--GAGACTT-AATTTTCAACATT-ATCA-AA-ACAGTCGAGTGAA-------T--A--GTTTGTTGAAATATTACATAAACGAT-CGTCGTAC-----ATATAGGC----------CTATA--GCGTACAAAACGGTC-GT-GCAAA-TAGCTGATCAAC-AGTGAT-TATAGTC-TTA-CGATAT-GTACACAACCGTTGTGCAA-CACTA-CCGATTCAT--TCGAACTATAAA--T-AAAA-CT-GACGTAATA----AA-CCACTCACAT----TTC-ATCGGCAT-CAA-------A-TT-TTCATTG-T-CGTGT-GC-GACCCATGGGTG-TT-CTTACCAATTTTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATG-ATCATGAT-GCTTTTGACAGCT-CATAAAAGATGGCGTTCGT-ATATCGCGCCTAAATTGGTCTTCCCAGAATGCAATAGCCCG-AGCCCGAA-CCGACGC-TT-ATAT-ATACTTACG-A-C---CCG-ATCGGTTTA-TTGCCAGAATGTT-ACC-A--AAATTTG--TTGC--AGCTAG---TG--GCAA-TA-TTA-CA-AAC-TGTATGCTGATAGCTGA-TCACATAGG-ATG-TTGCC-ATAA-ATTTTTTCT-GGCAG--TATTGCCAG-AA---T----G--TTACC-AGA-AGTTGT-TGCAGCTA-G-TGG--CA-A-------------TACTTCA--C---TCTCTC-TGG-CA--GTAT--TGCCA-GAA-T---GTTAC--C---A---G-AA-GTTGTTG-CAGC-----TAGTG--GC---A-A----T-ATT-TT------C---ACTTGTCTCAAAATCTGGTCTC-TGGCAACAAAAATGTGTTG--CTGCAAT--G-TT-GCC---G-T-AA---TA--TCG-CGGCGATATTGCTGCAACAATTT-TACT-----T
gi|5 : cataACACAACCGTTGTGCA--CACTA-CCAATTCAT--TCGAACTATAAA--T-AAAA-CT-GACGTAATA----AA-CCACTCACAT----TTC-ATCGGCAT-CAA-------A-TT-TTCATTG-T-CGTGT-GC-GACCCATGGGTGCTT-CTTACCGA-TCTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATG-ATCATGAT-GCTTTTGACAG-T-CATAAAAGATGGCGTTCGT-ATATCGCGCCT-ATTTGGTCTTCCCAGAATGCAATAGCCC--AG-CCGAACCCGACGC-TT-ATAT-ATACATACGAA-C---CCG-ATAATTTTA-TTGCCAGAATGTT-ACC-A--AAATTTG--TTGC--AGCTAG---TG--GCAA-TA-TTA-CA-AAC-TGTATGCTGATAGCTGA-TCACATAGG-ATG-TTGCC-AGAA-ATTTTTTCT-GGCAG--TATTGCCAG-AA---T----G--TTACC-AGA-AGTTGT-TGCAG-TA-G-TGG--CA-AT--------------CTTCA--C---TCTTTC-TGG-CA--GTAT--TGCCA-GAA-T---GTTAC--C---A---G-AA-GTT-TTG-CAGC-----TAG---------------------------------------------------------TGGCA--------ATATTG--CCAGAAT--G-TTAACA---A-G-AA-GTTG--TTG-CAGC--TAGTG--GCAAT-ATTT-CACT-----TG-TCTCA-AAATCTGGT--CTCTGGC-A-A--T---A----AAA-TGT-T---TTGC-TGCAA------TGTTG---------CCGCAA--TA--CGC-GG----------CGAT---A-T-T--G--C-TG-C--AACA-A-TTTTACtgg
gi|6 : G--CATTGCAAG-AA---TACTAG--GTACC-ACATAATAGT-TGGAAATGCG-TTG--CA-GT---AA--TATT--GCCGCAAAT---CCTTTC-TGG-CA--ATAT--TGCCGCAAA-TCTAATTAG--C---ATACG-AA-AT--CTG-ATAT-----TACC---AC---A-A----T-A-T-TGCCGCAAC---ATGC--------------TTTG-CAGCA--------GTACTG--CCGCAACTAG-TT--TC---A-A-AA-TATGCTTTG-CAGCAATATTGCTGCAAC-ACTT-CTCTGGCAATATTGCCGCAAATCTAAT--TTACATA-A-ATTTAA-ATACGAAA-TCT-GATATTAC-CGCAA------TATTG---------CTGCAATGTATTGCC-AGAATGTTACTACAAT---A-T-T--G--C-TG-C--AATA-A-T
gi|6 : gttTTTG-CGG-CA--ATAT--TGCCA-GA---------------------G-AA-GT-GTTG-CAGCAATATTGCT---GC---A-AAGCAT-A-T-TT------TGAAACTA--------------GTTG-CGGCA--------GTACTG--CTGCAA--------------A-G-CA---TG--TTG-C---------G--GCAAT-ATTG----------TGGT---A-ATATCAGAT--TTC--GT-ATG--CTA-ATT--AGA-T-------TTGC-GGCAA------TATTG---------CCAGAAAGGATTTGC-GG----------CAAT---A-T-T--A--C-TG-C--AACGCA-TTTgccagaagatatcgccagaagggctgtatttcaataaggg
gi|6 : gttgcattgcaagaatactaggtaccacataatagttggCATACGAAAT---CTG-AT------A-TTACCACAATATT-GCC-G--CAACATGCTTTGC--AGC-AGTACTGCCGCAACTAGTTT-CA-AA---ATATGCT--TTGC----------AGCAATA-TTG-CTGCAA-CACTTCTCT-GGCAA--TATTGCCGC-AAATCT----AATTTAC--ATA-AATT-----TAAATA-C---G--AA-ATCTGA---TATT--ACCGCA--A---TATTGC-TG--CAATGTAT--TGCCA-GAA-T---GTTAC--T---A---C-AATATTGCTG-CAA------TAAT---GC---tctaatttacataaatttaaatacgaaatctgatattaccgcaatattgctgcaatgtattgccagaatgttactacaatattgctgcaataatgccagaagatatcgccagaagggctgtatttcaataaggg
gi|6 : gttgcattgcaagaatactaggtaccacataatagttggaaatgcgttgcagtaatattgccgcaaatcctttctggcaatattgccgcaaatctaattagA-T---ATTAC--C---G---C-AATATTGCTG-CAATG----TATT---GCCAGA-A----T-G-T-T-----------ACT----------------------ACA--------ATATTG--CTGCAAT--A-AT-GCC---A-G-AA-GATA--TCGCCAG----AAGG--GCTGT-ATTT-CAcagaagatatcgccagaagggctgtatttcaataaggg
gi|7 : gttgcattgcaagaatactaggtaccacataatagttggaaatgcgttgcagtaatattgccgcaaatcctttctggcaatattgccgcaaatctaattagcatacgaaatctgatattaccacaatattgccgcaacatgctttgcagcagtactgccgcaactagtttcaaaatatgctttgcagcaatattgctgcaacacttctctggcaatattgccgcaaatctaatttacataaatttaaatacgaaatctgA-T-AAAAATTTGATGTAATACAGAAA-CCTGCAACATGTTTTTC-ATCAGCATTCAACTCCCTCA-TTCTTCGCTA-C-AGTGA-GC-TTTTCACGGGTGCTT-CTTATCGA-TCTTCTCCATCTGTGGACTCAATAGTCAGGAAACGGCGTGGGCGTGT-------TG-GCCACGATAGCTTT--ATAGAT-C--CAAAGATGGCATTTGT-ataaggg
gi|8 : tacgaaatataaaaaggcactactaccaccaagttgacataggaattttctaatgcacagatatttttaggagtccaaataatcctttggcactTTGTGA-CAGCC----TAGTT--GC---A-A----TTA-TCTT------C---ACTC--------------TTTC-TTGCA---------TACT---CCAGAAT--G-T--ACC---A-G-AACGTTG--TC--CA-C--TAGTG---CAAT-ATTTTCACT-----TGT-CTCA-AAATCTGG---CTCTGCC-A-AA-CACTA----AAA-TGT-G---TTGC-TGCAA------TGTTT---------CCGTAAT-TATCCTC--G----------CGA----A---T--G--C--G-CAAAACA-A-TTTTACTTT--GGTttttgccgctattctctacccaattcgcatagtgtagaacccg
gi|9 : CAGTCGAGTGAA-------T--A--GTTTGTTGAAATTTTGCATAAACGAT-CGTCGTAC-----ATATAAGC----------CTATA--GCGTACAAAACGGTC-GT-GCGAA-TAGCTGATCAAC-AGTGAT-TATAGTCATTG-CGATAT-GTAtaagt
blockSeqs : TTT . T T T CATTA G TACTGAATA A ATTAT AGTTGAAACA TT C C A . G A C A . . AA G A T CAGA A GTTT G C CTCCCTC . C GT C A T T T GGACTCAATAGTCA GG T . A C C A AAA AC C T A A TCGA A CAT T . ATC CT CA TACTGCC C C T G G A T A T CA G T G GC A ATC ACTAG T T A C C CTG TC CATAGGATGTTTG TAAA G G AT TG C TCTA CA GTAA T T G C AATAT GGCAATATTTTCACTTGTCTCAAAATCTGGT G ACAAAAAT TG AG GGTTA GTA C T CGT CT T C GA G CT A T GGCAA TTC C GC G T T TTTAAATACG T A GATA . TATTAT TTATTTTCT TG T AGAATGTTACTA CTAATC GCA T C AA C T TG
blockSeqs : . . . A . CAA A ATA . . . . . A . . . . . A . . A . A . . . . . T . . . TT . . . . T . . T . . C . . AAA G C . . . AT . CGG . . AA . . TGG . G . . . T T A . CC T . . . . . AAT . . . C . TT . ATCTGATATTA AAT . . . . . TG . ATAC . T G . G GCAAAGCATATTTTGAAACTAG . . . GC GTTAA . . . GT . G . AA T CT . . . TTG . . C . . CTAATT . G GG . . . AG T GGG ACT G C . . . . .
blockSeqs : . . . A . AAG G TA . . . . . . . . . . . A . . A . . . . . . . . . . . T . . . . T . . T . . C . . AA G C . . . C . AAT . . A . . TC . . . . . T T A . CC T . . . . . A . . . A . TG . GTAATATTG C . . . . . AT . TA . . G . C ACAATATTGCCGCAACATGCT . . . AG TAGTT . . . GT . C . . G . . . . TC . . G . . ACACTA . G G . . . T T GG AT G T . . . . .
blockSeqs : . . A . CAA A TA . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . C . . . . . A . . AT G . . . . C . CG . . A . . TG . . . . . . T . . CC T . . . . . G . . . C . TG . GCATATT A . . . . . T . A . . G . . TGCAATTATCTTCACTCT . . . GC GTTA . . . GT . T . . T . . . . TC . . A . . CAAA . G G . . . . . GG AT G T . . . .
blockSeqs : . . . . AAA A TA . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . C . . . . G . . TG . . . . . . . . . CT G . . . . . A . . . A . TT . ATA C . . . . . T . A . . G . . TGTGCATATTTTCAACT . . . GC GTTG . . . TA . T . . A . . . . GT . . G . . CAAA . C T . . . . . GG AT A T . . . .
blockSeqs : A A . . . . . . . . . . . . . . . C C . . . . . G . . . A . T . TA C . . . . . T . A . . G . . GGCAATATTTCACTCT . . . GC AATG . . . GA . T . . G . . . . TC . . . . . CACA . G G . . . . . G A G . . . . .
blockSeqs : . . . G . . . . . . . AT A . . . . . T . A . . G . . GCCAGAATGTTACT . . . AG GTA . . . . . C . . . . . . . T . . . . . TA . . . .
blockSeqs : . . . . . T . G . . . . . GCATATTTCCTTG . . . A . . . . . . C . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . .
blockSeqCons : ** NAA** TA*********** A* ** A* AA* TG***** CC* ATATATTG********* T**** GTTA**** TC* GG*********** G**** T*
originalCons : NNNNNTACGATTTACGTATCACTT---CACCG--GAGACTT-AATTTTCAACATT-ATCACAA-ACGGTCGAGTGAA------AT--A--GTTTGTTGAAATATTACATAAACGAT-CGTCGTAC-----ATATAGGC----------CTATA--GCGTACAAAACGGTC-GT-GCGAA-TAGCTGATCAAC-AGTGAT-TATAGTCATTA-CGATAT-GTACACAACCGTTGTGCAA-CACTA-CCGATTCAT--TCGAACTATAAAA-T-AAAAACT-GACGTAATA----AA-CCACTCACAT----TTC-ATCGGCATTCAA-------A-TT-TTCATTG-T-CGTGT-GC-GACCCACGGGTGCTT-CTTACCGA-TCTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATG-ATCACGAT-GCTTTTGACAGCT-CATAAAAGATGGCGTTCGT-ATATCGCGCCTAAATTGGTCTTCCCAGAATGCAATAGCCCG-AGCCCGAACCCGACGC-TT-ATAT-ATACATACGAA-C---CCG-ATCGTTTTA-TTGCCAGAATGTT-ACC-A--AAATTTG--TTGC--AGCTAGT--TG--GCAA-TA-TTA-CA-AAC-TGTATGCTGATAGCTGATTCACATAGGAATG-TTG-C-ANAA-AATTTTTCT-GGCAG--TATTGCCAG-AA---T----G--TTACC-AGA-AGTTGT-TGCAGCTA-G-TGG--CA-AT---A---TATT-TACTTCA--C---TCTTTC-TGG-CA--GTAT--TGCCA-GAA-T---GTTAC--C---A---G-AA-GTTGTTG-CAGC-----TAGT---GC---A-A----T-A-T-TT------C---ACTC--------------TTTC-TGGCA--------GTATTG--CCGNAAT--G-TT-ACC---A-G-AA-GTTG--TCG-CAGC--TAGTG--GCAAT-ATTT-CACT-----TGTTCTCA-AAATCTGGT--CTCTGGC-A-A--CAA-A----AAA-TGT-G---TTGC-TGCAA------TGTTG---------CCGTAA--TATTCGC-GG----------CGAT---A-T-T--G--C-TG-C--AACA-A-TTTTACTTT--GGTAA
finalCons : NNNNNTACGATTTACGTATCACTT---CACCG--GAGACTT-AATTTTCAACATT-ATCANAA--CGGTCGAGTGAATA-----------GTTTGTTGAAATATTACATAAACGAT-CGTCGTAC-----ATATAGGC----------CTATA--GCGTACAAAACGGTC-GT-GCGAA-TAGCTGATCAAC-AGTGAT-TATAGTCATTA-CGATAT-GTACACAACCGTTGTGCAA-CACTA-CCGATTCAT--TCGAACTATAAAA-T-AAAAACT-GACGTAATA----AA-CCACTCACAT----TTC-ATCGGCATTCAA-------A-TT-TTCATTG-T-CGTGT-GC-GACCCACGGGTGCTT-CTTACCGA-TCTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATG-ATCACGAT-GCTTTTGACAGCT-CATAAAAGATGGCGTTCGT-ATATCGCGCCTAA-TTGGTCTTCCCAGAATGCAATAGCCCG-AGCCCGAACCCGACGC-TT-ATAT-ATACATACGAA-C---CCG-ATCGTTTTA-TTGCCAGAATGTT-ACC-A--AAATTTG--TTGC--AGCTAGTG-----GCAA-TA-TTA-CA-AAC-TGTATGCTGATAGCTGATTCACATAGGAATG-TTGCC-ANAA-AATTTTTCT-GGCAG--TATTGCCAG-AA---T----G--TTACC-AGA-AGTTGT-TGCAGCTA-G-TGG--CAATATATTG---------CTTCA--C---TCTTTC-TGG-CA--GTAT--TGCCA-GAAT----GTTAC--C---A---G-AA-GTTGTTG-CAGC-----TAGT---GC---A-A----T-A-T-TT------C---ACTC--------------TTTC-TGGCA--------GTATTG--CCGNAATGTTA----CC---A-G-AA-GTTG--TCG-CAGC--TAGTG--GCAAT-ATTT-CACT-----TGTC-TCA-AAATCTGGT--CTCTGGC-A-A--CAA-A----AAA-TGT-G---TTGC-TGCAA------TGTTG---------CCGTAA--TATTCGCGG-----------CGAT---A-T-TG----CT-G-C--AACA-A-TTTTACTTT--GGTAA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AGTTTCAATCGCAACTTCTCCTTCTTCCGGTTACGGTACATGACACTATNNNNNNNNNNNNNNNNNNNNNNNNNAGATGAACATTACTTGGATCTTATTCCGTATAAACA
Unaligned ( gi|13 ): TTCTTCTTCTTCCGGTTACGGACATGACACTTATAACTGTGTATTTT
Unaligned ( gi|17 ): CCATGCCTCAATTTTAAATTTGCATAAATTTTTATATG
Alignments
lowQualScore : 333333 1111 1111111 111 11111 2222222222 1 11 1111 1111 11 2222222 33333333333333 1 11111 111 1 1 1 1111111 4444444444444444444444444 111111 11111 111 11111 444444444444444444444444444444444444444444444444444 11111111 11 11 11111111 11111111111 11111111 111111 222222222 22 1 2222222222222 1111111 11
lowQualScore : 666666 99 6 1 5 1 0000 1 8888888 77 000 6 66666 9999999999 77 0 5 1 5 5 88 0 8 8 88 8 11 88 6 7 6 6 4444 4444 6 11 1111111 6 6 6 6 6 6 0 6 6 1 99999999999999 99 3 6 0 6 2 6 5 3 77 8 8 8 33333 6 111 6 6 9999 99 99 99 6 99 5 1 5 5 5 2 1 2 0 1 5 5 66 0 5 888 3333333 5 5 66 5 5 2 5 4444444444444444444444444 555555 4 4 66 66 4 33333 55 111 777 4 8 1 3 66666 0 444444444444444444444444444444444444444444444444444 4 66666666 66 33 66 4444 9999999 777 66 1 4 22 5 22 4 4 0 66666666 5 5 0 66 4 5 5 99999999999 00000000 5 666666 222222222 11 2 5555555555555 0000000 88888 55 5 77 5 5 33
lowQualScore : ...... .. . . . . .... . ....... .. ... . ..... .......... .. . . . . . .. . . . .. . .. .. . . . . .... .... . .. ....... . . . . . . . . . . .............. .. . . . . . . . . .. . . . ..... . ... . . .... .. .. .. . .. . . . . . . . . . . . . .. . . ... ....... . . .. . . . . ......................... ...... . . .. .. . ..... .. ... ... . . . . ..... . ................................................... . ........ .. .. .. .... ....... ... .. . . .. . .. . . . ........ . . . .. . . . ........... ........ . ...... ......... .. . ............. ....... ..... .. . .. . . ..
lowQualScore : 333333 22 7 7 7 0 1111 4 6666666 99 000 7 77777 2222222222 99 1 7 4 7 7 88 8 0 0 88 0 00 88 7 3 7 7 2222 2222 7 55 7777777 7 7 7 7 7 7 7 7 7 7 22222222222222 22 2 7 7 7 5 7 7 3 77 0 0 0 77777 7 888 7 7 3333 22 22 22 7 22 7 4 7 7 7 1 4 0 7 0 7 7 99 1 0 888 5555555 0 0 99 0 0 5 0 6666666666666666666666666 999999 4 4 11 11 4 33333 55 000 000 0 0 4 6 44444 5 555555555555555555555555555555555555555555555555555 0 11111111 11 77 11 6666 4444444 777 11 7 4 22 7 22 0 0 9 11111111 0 0 1 99 5 0 0 88888888888 44444444 0 444444 999999999 44 0 9999999999999 4444444 00000 99 7 99 7 7 88
consensus : NNNNNTACGATTTACGTATCACTT---CACCG--GAGACTT-AATTTTCAACATT-ATCACA--A-CGGTCG-------AGTGAA--TA---GTTTGTTGAAATATTACATAAACGAT-CGTCGTAC-----ATATAGGC----------CTATA--GCGTACAAAACGGTC-GT-GCGAA-TAGCTGATCAAC-AGTGAT-TATAGTCATT-ACGATAT-GTACACAACCGTTGTGCAA-CACTA-CCGATTCAT--TCGAACTAT-AAAAT-AAAAACT-GACGTAAT-A----AACCACTCACAT----TTC-ATCGGCATTCAA-------A-TT-TTCATT-GT-CGTGT-GC-GACCCACGGGTGC-TTCTTACCGA-TCTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATG-ATCACGAT-GCTTTTGACAGCT-CATAAAAGATGGCGTTCGT-ATATCGCGCCT-AATTGGTCTTCCCAGAATGCAATAGCCCG-AGCCCGAACCCGACGC-TT-ATAT-ATACATACGAA-C---CCG-ATCGTTTTA-TTGCCAGAATG-TTACC-A--AAATTTG--TTGC--AGC--TAG-TG--GCAA-TA-TTA-CA-AAC-TGTATGCTGATAGCTGATTCACATAGGAATGTTGCCANAA-AATTTTTCT-GGCAG--TATTGCCAG-AA---T----G--TTACC-AGA-A--GT-TGTTG-CAGCTA-GTGGCAAT---A--TA------TTG--CTTCA--C---TCTTTC-TGG-CA--GTAT--TGCCA-GAA-T---GTTAC--C---A---G-AA-GTTGTTG-CAGC-----TAGT---GC---A----AT-A-T-TT------C---ACTC--------------TTTC-TGGCA--------GTATTG--CCGNAAT--G-TT-ACC---A-G-AA-GTTG--TCG-CAGC--TAGTG--GCAAT-ATTT-CAC--------TTG-T-CTCAAAATCTGGT--CTCTGGC-A-A--CAA-A----AAAT-GT-G---TTGC-TGCAA------TGTTG---------CCGTAA--TATTCGC-GG----------CGAT---A-T-T--G--C-TG-C--AACA-A-TTTTACTTT--GGTAA
Reference ( family-580 ) : NNNNNTACGATTTACGTATCACTT---CACCG--GAGACTT-AATTTTCAACATT-ATCANA--A-CGGTCG-------AGTGAA--TA---GTTTGTTGAAATATTACATAAACGAT-CGTCGTAC-----ATATAGGC----------CTATA--GCGTACAAAACGGTC-GT-GCGAA-TAGCTGATCAAC-AGTGAT-TATAGTCATT-ACGATAT-GTACACAACCGTTGTGCAA-CACTA-CCGATTCAT--TCGAACTAT-AAAAT-AAAAACT-GACGTAAT-A----AACCACTCACAT----TTC-ATCGGCATTCAA-------A-TT-TTCATT-GT-CGTGT-GC-GACCCACGGGTGC-TTCTTACCGA-TCTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATG-ATCACGAT-GCTTTTGACAGCT-CATAAAAGATGGCGTTCGT-ATATCGCGCCT-AATTGGTCTTCCCAGAATGCAATAGCCCG-AGCCCGAACCCGACGC-TT-ATAT-ATACATACGAA-C---CCG-ATCGTTTTA-TTGCCAGAATG-TTACC-A--AAATTTG--TTGC--AGC--TAG-TG--GCAA-TA-TTA-CA-AAC-TGTATGCTGATAGCTGATTCACATAGGAATGTTGCCANAA-AATTTTTCT-GGCAG--TATTGCCAG-AA---T----G--TTACC-AGA-A--GT-TGTTG-CAGCTA-GTGGCAAT---A--TA------TTG--CTTCA--C---TCTTTC-TGG-CA--GTAT--TGCCA-GAA-T---GTTAC--C---A---G-AA-GTTGTTG-CAGC-----TAGT---GC---A----AT-A-T-TT------C---ACTC--------------TTTC-TGGCA--------GTATTG--CCGNAAT--G-TT-ACC---A-G-AA-GTTG--TCG-CAGC--TAGTG--GCAAT-ATTT-CAC--------TTG-T-CTCAAAATCTGGT--CTCTGGC-A-A--CAA-A----AAAT-GT-G---TTGC-TGCAA------TGTTG---------CCGTAA--TATTCGC-GG----------CGAT---A-T-T--G--C-TG-C--AACA-A-TTTTACTTT--GGTAA
gi|1 : TACGATTTATGTATCAATCGGACACTGTCGAGACTT-AATTTTCAACATT-ATCACA--AACAGTCG-------AGTGAAATTAATTGTTTGTTGAAATATTACATAAACGAT-CGTCGTAC-----ATATATGC----------CTATA--GCGTACAAAACGGT--GT-GCGAA-TAGCTGATCAACCAGTGAT-TATAGTCATT-ACGATAT-GTACACAACCATTGTGCAAACACTAACCAATTCATATTCGAACTAT-AAAAT-AAAAACT-GACGTAAT-A----AATCACTCACAT----TTC-GTCGGCACTCAA-------AATT-TCCATT-GT-CGTGT-GC-GACCCATGGGTGC-TTCTTACAAA-TCTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATTCATCATGAT-GCTTTTGACAGCT-CATAAAAGATGGCGTTCAT-ATATCGCGCCT-AATTGGTCTTCCCAGAATGCAATAGCCCG-AGCCCGAACCCGACGC-TT-ATAT-ATACATACGAA-C---CCG-ATCATTTTA-TTGCCAGAATGTTTACC-A--AAATTTG--TTGC--AGC--TAGTTG--GCAA-TA-TTA-CA-AAC-TGTATGCTGATAGCTGATTCACATAGGAATGTTG-CAGAA-AATTTTTCT-GGCAG--TATTGCCAG-AA---T----G--TTACC-AGA-A--GT-TGTTG-CAGCTA-GTGGCAAT---ACGTA------TTGTACTTCA--C---TCTTTC-TGG-CA--GTAT--TGCCA-GAA-----GTAAC--C---A---G-AA-GTTGTTG-CAGC-----TAGT---GC---A----AT-A-T-TT------C---ACTC--------------TTTC-TGGCA--------GTATTG--CCAGAAT--G-TT-ACC---A-G-AA-GTTG--TTG-CAGC--TAGTG--GCAAT-ATTT-CAC--------TTGTT-CTCAAAATCTGGT--CTCTGGC-A-A--CAA-A----AAAT-GT-G---TTGCTTGCAA------TGTTG---------CCGTAA--TATTCGCGGG----------CGAT---A-T-TTGG--CGTG-C--AACA-A-TTTTACTTT--GGTAA
gi|10 : gaaatACCG--GAGACTA-AATGTTCAACTTTTATCACATTA-CGGCTGTGTGAATACTGAA--TA---GTCTGTTGAAATATTACATACACGAC-CGTCGTGCATTATATATAGACAGTTGAAACATTATATTGCGTACAAGACGGTC-AT-GCAAA-TAGCTGTTCGAC-A
gi|12 : tACGATTTACGTATCAC--------CG--GAGACTT-AATTTCCAACATT-ATCACA--A-CAGTCG-------AGTGAA--TA---GTT
gi|14 : ttaT-ATTT-CAC--------T-G-T-----AAATCTGGC--ATCTGGC-A-A--CAA-A----ATAT-AT-G---TTGC-
gi|15 : TATT--GCGTACACCGCGGTC-GT-GCGAA-TAGCTGTTCAAG-AGatg
gi|16 : ctata-ATATCGCGCC-------GTCTTCCCAGAATGCAATAGCCTG-AGCCCGA
gi|2 : gTACAATTTACGTATCACTT---TACCG--GAGACTA-AATTTTCAAC-TT-ATCAAA--G-CGGTCG-------AGTGAA--TA---GTTTGTTGAAATATTACATAAACGACACGTCGTAC-----ATATAGGC----------CTATA--GCGTACAAAACGGTC-GTCACG-A-TAGTTGATTAAC-AGTGAT---TAGTCATTAACGATATCGTACACAACAGTTGTGCAA-CACTA-CCAATTCAT--TCGAACTATAAAAATGAAAAACT-GACGTAATAA----AACCACTCACAT----TTC-ATCCGCA-TCAA-------A-TT-TTCATTGGT-CGTGTCGC-GACCCACGGGTGCTTTCTTACCGA-TCTTCTCTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATG-ATCGCGAT-GCTTTTGACAGCTCCATGAAACATGGCGTTCGTAATATCGCGCCT-AATTGGTCTTCCCAGAATGCAATAGCCCACAG-CCGAACCCGACGCTTT-ATAT-ATACATA-GAA-C---CCGAATCATTTTATTTGCCAGAATG-TTACCAA--AAATTTG---TGC--AGC--T-G-T---CCAA-TA-TTA-CA-AACGTGTATGCTGATAGCTGAATCACATAGGAG-GTTGCAAGAA-AATTTTTCT--GCAG--TATTGCCAG-AA---T----A--TTACC-AGA-A--GT-TGTTG-CAGC-A-GTG----C---A--TA------T-----TTCA--C---TCTTTC-T-G-CA--GTAT--TGCCA-GAA-T---GTTACCAC---A---G-AA-GTTGTTG-CAGC-----TAGTG--GC---A----AT-A-T-TT------C---ACTC--------------TTTC-TGGCA--------GTATTG--CCAGAAT--G-TT-ACC---ACG-AA-GTTG--TTG-CAGC--TAGTG--GCAAT-ATTT-CAC--------TTG-T-CTCAAAATCTGGT--TTCT-GC-A-A--CAA-A----CAAT-GTGG---TTGC-TGCAA------TGTTG---------CCGTAA--TA-TCGC-GG----------CGATCTAA-TCT--GCAC-TGCC--AACA-A-TTTTACTTT--GGTAA
gi|3 : tataTTACATATCAC--------CG--CAGACTTTAATTTTCAACATT-A-CACA--A-CAGTCG-------AGTGAA---A---GTTTGTTGAAATATTACATAAACGAT-CGTCGTAC-----ATATAGGC----------CTATA--GCGTACAAA-CGGTCCGTAGCGAAATAGCTGATCAAC-AGTGACGTATAGTCATT-ACGATAT-GTACACAACCGTTGTGCCA--ACTA-CCGATTCAT--TCGAACTAT-AAAAT-AAAA-CT-GACGTAAT-A----AACCACTCACAT----TTCGATCGGCATCCAA-------A-AT-TTCATT-GTTCGTGT-GGAGACCCATGGGTGC-TTCTTGCCAA-TCTTCTT-ATCTGT--------------AGAAAC--CGTGG-ACTGTTT-ACGATG-ATCATGAT-GCTTTTGACAGCT-CATAAAAGATGGCGTTCGT-ATATCGCGCCTAAATTGGTCTTCCCAGAAT-CAATAGCCCG-AGCCCGAACCCGACGC-TTAATATAATACTTACGAA-TCGACCG-ATCG-GTTA-TTGCCAGAATG-TTACC-ATCAAATTGT--TTGCCAAGC--TAG-TG--GGCA-TA-TTATCAGAAC-TGTATGCTGATAGCTGATCCACATAGG-ATGTTTGCATAATAAATTTTCTGGGCAG--TA--GCCAGAAA---T----G--TTACCTAGA-A--GT-TGTTC-CAGCTA-GTTGT-GC---A--TA------TT----TTCA--A----CTTTCGTGG--A--GTATTGTGCCA--AA-TG--GTTAC--CGTAA---GTAA-GTT-TTGCCAGC-----TATG---GC--------AT-A-T-TT------C----CTT--------------GTTC-Tgg
gi|3 : gaAA-TACTTA-CG-AAT-CG---ACCGATCGGTTATTGCCA---GAATGTTACCATCA-AATTGTT-T-GCCAAGCTAGTG--GG-CA---T----A--TTATC-AGA-ACTGTATGCTGATAGCTG-AT--CCAC---A--TAGGATGTTTG--CATAA--TAAAT-TTTC-TGGGCA--GTA----GCCA-GAAAT---GTTAC--CT--A---G-AA-GTTGTTC-CAGC-----TAGTTGTGC---AT---AT---T-TT------C---AA-C--------------TTTCGTGG-A--------GTATTGTGCC-AAAT--GGTT-ACCGTAA-GTAA-GTTT--TGC-CAGC--TA-TG--GCA-T-ATTT-C-C--------TTG-TTCTCAAAATCTCGTGCCTCTCGCTG-G--CAC-A----AAATTGT-G---TTGC-TGCGATATTATTGTTGTTATTTTCTTCGTAA--TA-TCGCGGG----------CGAT---ACT-T--G--C-CG-C--AAAA-ATTTTTACTTTTGGATAAcaaaatctcgtgcctctcgctggcacaaaattgtgttgctgcgatattattgttgttattttcttcgtaatatcgcgggcgatacttgccgcaaaaatttttacttttggataa
gi|4 : gattacatatcaccgcagactttaattttcaacattacacaacagtcgagtgaaagtttgttgaaatattacataaacgatcgtcgtacatataggcctatagcgtacaaacggtccgtagcgaaatagctgatcaacagtgacgtatagtcattacgatatgtacacaaccgttgtgccaactaccgattcattcgaactataaaataaaactgacgtaataaaccactcacatttcgatcggcatccaaaatttcattgttcgtgtggagacccatgggtgcttcttgccaatcttcttatctgtagaaaccgtggactgtttacgatgatcatgatgcttttgacagctcataaaagatggcgttcgtatatcgcgcctaaattggtcttcccagaatcaatagcccgagcccgaacccgacgcttaatatT---CACCA--GAGACTT-AATTTTCAACATT-ATCAAA--A-CAGTCG-------AGTGAA--TA---GTTTGTTGAAATATTACATAAACGAT-CGTCGTAC-----ATATAGGC----------CTATA--GCGTACAAAACGGTC-GT-GCAAA-TAGCTGATCAAC-AGTGAT-TATAGTC-TT-ACGATAT-GTACACAACCGTTGTGCAA-CACTA-CCGATTCAT--TCGAACTAT--AAAT--AAAACT-GACGTAAT-A----AACCACTCACAT----TTC-ATCGGCA-TCAA-------A-TT-TTCATT-GT-CGTGT-GC-GACCCATGGGTG--TTCTTACCAATTTTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATG-ATCATGAT-GCTTTTGACAGCT-CATAAAAGATGGCGTTCGT-ATATCGCGCCTAAATTGGTCTTCCCAGAATGCAATAGCCCG-AGCCCGAA-CCGACGC-TT-ATAT-ATACTTACG-A-C---CCG-ATCGGTTTA-TTGCCAGAATG-TTACC-A--AAATTTG--TTGC--AGC--TAG-TG--GCAA-TA-TTA-CA-AAC-TGTATGCTGATAGCTGA-TCACATAGG-ATGTTGCCATAA-ATTTTTTCT-GGCAG--TATTGCCAG-AA---T----G--TTACC-AGA-A--GT-TGTTG-CAGCTA-GTGGCAAT---A---------------CTTCA--C---TCTCTC-TGG-CA--GTAT--TGCCA-GAA-T---GTTAC--C---A---G-AA-GTTGTTG-CAGC-----TAGTG--GC---A----AT-ATT-TT------C---ACTTGTCTCAAAATCTGGTCTC-TGGCAACAAAAATGTGTTG--CTGCAAT--G-TT-GCC---G-T-AA---TA--TCG-CGGCGATATTGCTGCAACAATTT-TAC--------TT
gi|5 : cataACACAACCGTTGTGCA--CACTA-CCAATTCAT--TCGAACTAT-AAA-T-AAAA-CT-GACGTAAT-A----AACCACTCACAT----TTC-ATCGGCAT-CAA-------A-TT-TTCATT-GT-CGTGT-GC-GACCCATGGGTGC-TTCTTACCGA-TCTTCTTTATCTGT--------------AGAAAC--CGTGGGACTGTTTTACGATG-ATCATGAT-GCTTTTGACAG-T-CATAAAAGATGGCGTTCGT-ATATCGCGCCT-ATTTGGTCTTCCCAGAATGCAATAGCCC--AGCC-GAACCCGACGC-TT-ATAT-ATACATACGAA-C---CCG-ATAATTTTA-TTGCCAGAATG-TTACC-A--AAATTTG--TTGC--AGC--TAG-TG--GCAA-TA-TTA-CA-AAC-TGTATGCTGATAGCTGA-TCACATAGG-ATGTTGCCAGAA-ATTTTTTCT-GGCAG--TATTGCCAG-AA---T----G--TTACC-AGA-A--GT-TGTTG-CAG-TA-GTGGCAAT-------------------CTTCA--C---TCTTTC-TGG-CA--GTAT--TGCCA-GAA-T---GTTAC--C---A---G-AA-GTT-TTG-CAGC-----TAG--------------------------------------------------------TGGCA--------ATATTG--CCAGAAT--G-TTAACA---A-G-AA-GTTG--TTG-CAGC--TAGTG--GCAAT-ATTT-CAC--------TTG-T-CTCAAAATCTGGT--CTCTGGC-A-A--T---A----AAAT-GT-T---TTGC-TGCAA------TGTTG---------CCGCAA--TA--CGC-GG----------CGAT---A-T-T--G--C-TG-C--AACA-A-TTTTACtgg
gi|6 : G--CATTGCAAG-AA---TACTAG--GTACC-ACATA--AT-AGTTG-GAAATGCGTTGCAGT---AA-TA------TTG--CCGCAAAT---CCTTTC-TGG-CA--ATAT--TGCCGCAAA-TCTAATTAG--C---ATACG-AA-AT--CTG-ATAT-----TACC---AC---A----AT-A-T-TGCCGCAAC---ATGC--------------TTTG-CAGCA--------GTACTG--CCGCAACTAG-TT--TC---A-A-AA-TATGCTTTG-CAGCAATATTGCTGCAAC-ACTT-CTCTGGCAATATTG-C-CGC-AAATCTAAT--TTACATA-A-ATTTAA-ATACGAAAT-CT-GATATTAC-CGCAA------TATTG---------CTGCAATGTATTGCC-AGAATGTTACTACAAT---A-T-T--G--C-TG-C--AATA-A-T
gi|6 : gttTTTG-CGG-CA--ATAT--TGCCA-G------------------A---G-AA-G-TGTTG-CAGCAATATTGCT---GC---AAAGCAT-A-T-TT------TGAAACTA--------------GTTG-CGGCA--------GTACTG--CTGCAA--------AGC---A--------TG--TTG-C---------G--GCAAT-A---------------TTG-T-GGTAATATCAGAT--TTC--GT-ATG--CTA-ATT--AGAT--------TTGC-GGCAA------TATTG---------CCAGAAAGGATTTGC-GG----------CAAT---A-T-T--A--C-TG-C--AACGCA-TTTgccagaagatatcgccagaagggctgtatttcaataaggg
gi|6 : gttgcattgcaagaatactaggtaccacataatagttggCATACGAAAT---CTG-AT------A-TTACCACAATA-TTGCC-G--CAACATGCTTTGC--AGCAGTAC-TGCCGCAACTAGTTT-CA-AA---ATATGCT--TTGC----------AGCAATATTGCTGCAA-CACTTCTCT-GGCAA--TATTGCCGC-AAATCT----AATTTAC--ATA-A--AT-T-----TAAATA-C--GAAATCTGA--TA------TTA--CCGCA--A---TATTGC-TG--CAATGTAT--TGCCA-GAA-T---GTTAC--T---A---C-AATATTGCTG-CAA------TAAT---GC---tctaatttacataaatttaaatacgaaatctgatattaccgcaatattgctgcaatgtattgccagaatgttactacaatattgctgcaataatgccagaagatatcgccagaagggctgtatttcaataaggg
gi|6 : gttgcattgcaagaatactaggtaccacataatagttggaaatgcgttgcagtaatattgccgcaaatcctttctggcaatattgccgcaaatctaattagA-T---ATTAC--C---G---C-AATATTGCTG-CAATG----TATT---GCCAGA----AT-G-T-T-----------ACT----------------------ACA--------ATATTG--CTGCAAT--A-AT-GCC---A-G-AA-GATA--TCGCCAG----AAGG--GCTGT-ATTT-CAcagaagatatcgccagaagggctgtatttcaataaggg
gi|7 : gttgcattgcaagaatactaggtaccacataatagttggaaatgcgttgcagtaatattgccgcaaatcctttctggcaatattgccgcaaatctaattagcatacgaaatctgatattaccacaatattgccgcaacatgctttgcagcagtactgccgcaactagtttcaaaatatgctttgcagcaatattgctgcaacacttctctggcaatattgccgcaaatctaatttacataaatttaaatacgaaatctgAT-AAAAATTTGATGTAAT-ACAGAAACCTGCAACATGTTTTTC-ATCAGCATTCAACTCCCTCA-TTCTTCGCT-AC-AGTGA-GC-TTTTCACGGGTGC-TTCTTATCGA-TCTTCTCCATCTGTGGACTCAATAGTCAGGAAACGGCGTGGGCGTGT-------TG-GCCACGATAGCTTT--ATAGAT-C--CAAAGATGGCATTTGT-ataaggg
gi|8 : tacgaaatataaaaaggcactactaccaccaagttgacataggaattttctaatgcacagatatttttaggagtccaaataatcctttggcactTTGTGA-CAGCC----TAGTT--GC---A----ATTA-TCTT------C---ACTC--------------TTTC-TTGCA---------TACT---CCAGAAT--G-T--ACC---A-G-AACGTTG--TC--CA-C--TAGTG---CAAT-ATTTTCAC--------TTG-T-CTCAAAATCTGG---CTCTGCC-A-AA-CACTA----AAAT-GT-G---TTGC-TGCAA------TGTTT---------CCGTAAT-TATCCTC--G----------CGA----A---T--G--C--G-CAAAACA-A-TTTTACTTT--GGTttttgccgctattctctacccaattcgcatagtgtagaacccg
gi|9 : ATT-TTCGTA--C-CAGTCG-------AGTGAA--TA---GTTTGTTGAAATTTTGCATAAACGAT-CGTCGTAC-----ATATAAGC----------CTATA--GCGTACAAAACGGTC-GT-GCGAA-TAGCTGATCAAC-AGTGAT-TATAGTCATT-GCGATAT-GTAtaagt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AGTTTCAATCGCAACTTCTCCTTCTTCCGGTTACGGTACATGACACTATNNNNNNNNNNNNNNNNNNNNNNNNNAGATGAACATTACTTGGATCTTATTCCGTATAAACA
Unaligned ( gi|13 ): TTCTTCTTCTTCCGGTTACGGACATGACACTTATAACTGTGTATTTT
Unaligned ( gi|17 ): CCATGCCTCAATTTTAAATTTGCATAAATTTTTATATG