lowQualScore : 1111111111111111111111111111111111111
lowQualScore : 444 4 1 777777 1 1 1 333 22 1 22 444444 11111 1 1 4444444444444444444444444444444444444 2 22222 1 1 3333333 1 88888888888 11 555555 222 22222 1111111111 1 1 222 1 333333333 1 3333333 333 555555 1 22222 1 1 1 1 22 33333333333 1 111 2 2 22 2 222 22 2222 1 444 22 555 44444 333 2 2 1 444444 2 22 1 2 444444444 33333 2 1 222 11 1 1 333333 11 2222222222222 1 44 1 11 1 11 333333 1 22 1 333333 222222222222 1 11 888888888888888888888888888888 1 33333333333333 11 111 1111111 111111 22222 111 11 1111 111 88888888888888888888888888888888888888888888 1 111111111 1 11 3333333333333 222222222 11111111 1 1 22222222 111 111 222222222 333333333 1111 11111 11111 1111111111 111 1111111 1 3333 111 111 33333 33333333 22
lowQualScore : 666 0 3 5 111111 5 5 5 777 44 5 33 222222 22222 3 5 7 88 7 3 888 4444444444444444444444444444444444444 3 7 1 00000 3 3 6 6666666 3 22222222222 22 0 111111 8 444 00000 3 8888888888 7 6 5 3 333 3 4 444444444 5 0000000 1 77 4 000 333333 1 99999 5 5 3 5 2 5 4 44 11111111111 5 777 7 3 4 3 6 0 22 0 222 3 66 3333 5 111 33 888 3 22222 111 2 0 0 5 2 2 000000 2 4 0 2 00 3 6 7 222222222 55555 7 3 3 333 7 88 0 2 3 0 888888 6 11 0 9999999999999 0 55 8 2 7 88 3 55 222222 2 7 7 33 3 888888 6 7 1 111111111111 7 3 7 8 11 6 3 8 6 777777777777777777777777777777 8 8 0 88 2 3 2 0 2 66666666666666 33 8 111 6666666 555555 22222 7 111 44 99 3 444 999 1 5 99999 0 2222 77 5 5 777 0 5 5 5 77 4 33333333333333333333333333333333333333333333 77 4 4 0 4 5 5 0 5 888888888 2 0 1 1 3 888 5 0 1 5 666 5 8888 8 4 99999 4 4 4 00 7777777777777 22 555555555 4 9 4 99999999 3 4 7 4 55555555 5 55 5 1 6 6 000 5 77 5 1 77 5 1 99 1 111 666666666 0 111111111 0000 77 5 44444 55555 7777777777 7 000 0 5 1 5 3 5 5 3333333 888 2 3 6 4444 6 1 3333 1 777 6 6 6 4 111 6 6 333 8 8 0 44444 8 55555555 33 7
lowQualScore : ... . . . ...... . . . ... .. . .. ...... ..... . . . .. . . ... ..................................... . . . ..... . . . ....... . ........... .. . ...... . ... ..... . .......... . . . . ... . . ......... . ....... . .. . ... ...... . ..... . . . . . . . .. ........... . ... . . . . . . .. . ... . .. .... . ... .. ... . ..... ... . . . . . . ...... . . . . .. . . . ......... ..... . . . ... . .. . . . . ...... . .. . ............. . .. . . . .. . .. ...... . . . .. . ...... . . . ............ . . . . .. . . . . .............................. . . . .. . . . . . .............. .. . ... ....... ...... ..... . ... .. .. . ... ... . . ..... . .... .. . . ... . . . . .. . ............................................ .. . . . . . . . . ......... . . . . . ... . . . . ... . .... . . ..... . . . .. ............. .. ......... . . . ........ . . . . ........ . .. . . . . ... . .. . . .. . . .. . ... ......... . ......... .... .. . ..... ..... .......... . ... . . . . . . . ....... ... . . . .... . . .... . ... . . . . ... . . ... . . . ..... . ........ .. .
lowQualScore : 000 0 0 5 000000 0 5 0 000 00 0 00 333333 77777 3 0 7 33 0 7 333 3333333333333333333333333333333333333 7 3 0 33333 3 7 0 7777777 3 77777777777 00 7 000000 3 000 77777 7 7777777777 3 7 0 3 333 3 7 000000000 0 3333333 0 00 0 555 000000 5 00000 0 0 0 5 5 5 0 00 55555555555 5 000 5 0 0 0 0 0 55 0 555 0 00 0000 5 000 00 000 0 00000 000 5 0 0 0 5 5 000000 5 0 0 5 77 3 7 3 000000000 77777 3 7 3 333 3 77 0 5 2 0 888888 8 00 8 8888888888888 0 00 3 0 3 33 3 00 777777 3 3 3 33 3 333333 7 3 0 777777777777 3 3 3 0 00 4 8 0 0 000000000000000000000000000000 0 0 8 88 5 2 5 0 5 22222222222222 22 0 888 0000000 222222 77777 8 777 00 22 5 111 666 4 7 66666 3 1111 44 7 7 999 7 7 3 7 99 3 11111111111111111111111111111111111111111111 99 3 5 8 4 0 0 0 0 222222222 0 0 7 8 2 888 0 1 4 0 000 0 9999 2 4 66666 4 4 4 00 7777777777777 99 111111111 6 1 4 00000000 3 4 8 4 44444444 0 99 0 0 7 7 888 7 99 7 4 99 7 8 22 0 777 555555555 7 000000000 1111 99 0 22222 88888 1111111111 3 111 1 0 7 7 0 7 7 4444444 333 2 3 7 3333 7 0 8888 7 333 7 7 7 2 777 7 7 888 0 0 8 00000 0 88888888 33 3
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACTTTACCCCCT-AAGAAAA-GAGTTAGAAAACGAAGCTNTAGAATCTAACATACCATG-ACCAAAAGAAAAGGAGGTAACCATCTTGCCCNTCCAGGAAAANTAACAAC--TGAGCAATTAAACTT-GTTGG-ANAAGGNTTGAAATGTNTACCGACGNAGCAAAATATCGATTTTA-----CTCG---ATTG-T--------------TAA--GGATT-AAAAAACATGGGAACGTAAGA-TGCGTCTGCGGGAAT-TTTTTT----C--GAA-AAAGAATCCGAGAATGAACCATCTTCAANTAATGACG--AAG-GTTACAAAT-TGAAAA-TTNTAAAGGTAATTGGACA-C--AAGAAGGAAGAGACAAATGGCTCGAT-AATAC-AT---TA-GNCAAGTCAAA-GAA-AC-TTATTAGAGGGC-GAGAAAGGANNTTTTCTNGAANAATACTTTANTACNCGCGGCGNAGAAAGGGCTATGACGGAGCTANTGACCGACCAAAACATAGTNATGNAGACCTGGCCAGACAAAGGATCTGGGATAGCGGTNATGGATTCGGATCGANACGTCGANCAAGTTGGAAAANCGAAATGCTTCANNAGCGCNTCTTACAGTGAAATAAACGTACGGCAAAAGCNAACAAATTACCAATNAAATGAAATNAAA--TAGTAAATAATNTACACGAAAAAGGACCCATTGTGCNTCTGAATTAAGACATTAATCTCCCTACCCANCGAANTGGACAGTCCNGGGANACTCCAAAGNTAAA-TCC-AAAA-TACACAA--A--GA--ACAATCCGT----TTCGAA-CT-ATA---GTAAATGGCCGACAGC-ACCCGACGGAAAAATT-AGCCGAGTAC------GTTGAGTCGCAACTC--GAGAATGCAAATAAGTCGC----T-TGATAG-TTATGTACAAG-ATACGACAGATTTTTTAAAGAAACTTTCAATT--GTGAAACAACCATTACCAGA-CCCTTGTATTCT-TTTTGCA-T----GGACGTGAAAGCTCTTTACCCCAGTATACCT-GAAAAGAAGCGCGCG-ATGTCATT------AAAAATGCTTTACAAGAACGTCATGAAAAGAAGTAGA-CACGGAAA-GTGTATTA-GAAATGATGGA-TGCT--GTCCTT-GATAATAAT-A--ATTTTAGT----------TTT-----AAT-GAT-AAACACTACATTCAGA-CCGAAGGTACCGCTATCGGAT-CGAAACTTGGT--CGTAACTACGCTTGTG-TTT-ATAT--GG---G---GGATGGGAA--NAAATC--CT-TTTTTGAAAAAT---CTG-AAAAG--CTACCAGTATTTTA-T-GTA-C-G--ATATAT----TGA-TGACA-TTT-T---GGCAT-CTGGACCGG-AAC--AGAAGAANA-CTTAAA--CAATTTCAT--AAAACCG-CGAA-TGA------AAT--ACATCCGAATAT-TCAGCT-TGA-CC-TGC-GCCA--------ATCTAATA-CAAAAACGGATTTCCTTGAT---G-TAACGATCTCAAT-AACGG-ACGGATT-CCTTTCT-ACTGACTTATA-TTGC----AA-AC-C-TAC-CGATAA------A------CATATGTACCT------T-AATAAAAGCTCTAAC-CA-C------CC-GAATC-CACA-AAAAAAG------C-TAT-TCCC-TTTGGACT-T-GGTCT-A-CGTGC-GC--GT-AGAATAT--GTT-CNAC--AGAA--GAAAACTA-CCAG-ATTCAACGAAA-NG---A--AAT---AA--A-AAA---ATAACTTA----AGAAAACGCGGT---TATTTAGATAATGATA--TAGAAAAAAGAA-CTCATCA-AA-GTAGA--TAAA-CTCG-ACCGATCNAATCTCCT-AAA-CTACAGAAAA-AAGACGA---AAGCAG-TATAATCG-TGTTCCCC-TTG-TAGTAA---ACT-ATTC-TAAAG-GACTTC-C-AATATTCATAAAATTNTAAAA-AAA-------TCGACAAAAAA-TTCTTGAG
Reference ( gi|1 ) : CCAACAAATGTTTAATTCAACCGATACAAACACTTTACCCCATGAAGAAAAAGAGTTAGAAAACGAAACTATAGAATCTAACATAC-ATGTACCAAAAGAAAAGGAGGTAATCAACCTGTC-ATCAAAGAAA-TTAACAAC--TGAGCAATTAAGGTT-GTTGGGAAAAGGTCTGAAATTTGTACCGACAAAACAAAATATTGATTTTA-----CTCA---ATTG-T--------------GAAG-GGATTTAAAAAACATGGAAACGGAGGA-TGCGTCTGCGGGAATATTTTTT----C--GAA-AAAGAATCCGAGATTGA------CTCAAGAAATGACG--A---GTAACAAATATAAAAAATTCTAAAGGTAATTGGACACCCGAAGAAGGAAGAGACAAATGGCTCGATGAATAC-AT---TA-GACAAGTTAAAAGAAGACGTTATTAGAGGGCTGAAAAAGAATTTTTTCTAG--AAATA-----TTACACGCGGTGAAGAAAGGGCTATGAAGGAGCTACTAACCGACCAAAACATAGTAAT-AAGACCTG--CAGACAAGGGATCTGGGATAGTGGTCATGGATGCGGATAAATACGTTGATCGAG-TGGAAAAG-GAAATGC-TCAAAAGCGCTTCTTATAGTGAAATAAA-ATACGACAAAAGCCAACAAATTACCAA-ATAATAAAA-AAAATTTAGTAAATAATATGCAC-AAAAAGGATCCATT-T-CGTCTGAATTAAGACATT-ATCTT-CTACCCACCGAAGTGG-CA-T-CCGGAAAACTCC-AAGCTAAA-TCC-AAAA-TACACAA--A--GG--ACAATCCGT----TTCGAAACT-ATA---GTAAATGGCCGACAGC-ACCCAACGGAAAAATT-AGCCGAGTAC------GTTGAGTCACAACTC--GAGAATGCAAATAAGTCGC----T-TGATAG-TTATGTACAA--ATACGACAGAATTTTGAAAGAAACTTTCAATT--GTGAAACAACCATTACCAGA-CCCTTGTATTCTTTTTTGCA-T----GGATGTGAAAGCTCTTTACCCCAGTATACCTAGAAAAGAAGCGCGCG-ATGTCATT------AAAAATGCTTTACAAGAACGTCATGAAAAAAAGTAGA-CACGGAAA-GTGTATTA-GAAATGATGGA-TGCT--GTCCTT-GATAATAAT-A--ATTTTAGT----------TTT-----AAT-GAT-AAACACTACATTCAGA-CCGAAGGTACCGCTATCGGAT-CGAAACTTGGT--CGTAACTA-GCTTGTG-TTT-ATAT--GG---G---GGATGGGAA--AAAATC--CT-TTTTTGAAAAAT---CTG-AAAAG--CTACCAGTATTTTA-T-GTA-C-G--GTATAT----TGA-TGACA-TTT-T---GGCAT-CTGGACCGG-AAC--AGAAGAAGAACTTAAA--CAATTTCAT--AAAACCG-CGAA-TGA------AAT--ACATCCGAATAT-TCAGCT-TGA-CC-TGC-GCCA--------ATCTAATA-CAAAAACGGATTTCCTTGAT---G-TAACGATCTCAAT-AACAG-ACGGATT-CCTTTCT-ACAGACTTGTA-TTGC----AA-AC-C-TAC-CGATAA------A------CATATGTACCT------T-AATAAAAACTCTAAC-CA-C------CC-GAATC-C-CA-AAAAAAG------C-TAT-TCCC-TTTGGACT-T-GGTCT-A-CGTGC-GC--GT-AGAATAT--GTT-CAAC--AGAA--GAAAACTA-TCAGAATTCAACGAAA-TA---A--AAT---AA--A-AAA---ATAACTTA----AGAAAACGCGGT---TATTTAGATAATGATA--TAGAAAAAAGAA-CTCATCA-AA-GTAGA--TAAA-CTCG-ACCGATCAAATCTCCT-AAA-CTACAGAAAA-AAGACGA---AAGCAG-TATAATCG-TGTTCCCC-TTG-TAGTAA---ACT-ATTC-TAAAG-GACTTC-C-AATATTCATAAAATTTTAAAA-AAA-------TCGACAAAAAAATTCTTGAG
gi|2 : AACACTTTACCCCCT-AAGAAAA-GAGTTAGAAAACGAAACTCTAGAA-CTAACATACCATG-ACCAAAAGAAA-GGAG-TAATCA--TTGCCCATCCAAGAAAATTAACAACAATGAGCAAT--AAGTT-GTTGG-ATAAGGTCTGAAAAGTTTACCGACATAACAAAATATTGATTTTA-----CC-----ATTGAT--------------TAA--CGATT---AAAACATTGGAAC-GAGGATTGCTCCTGCGGGAAT-TATTTT----CAAGAA-AAAGAATCCGAGA-TGA------CTCAGAAAATGACGAAA---GTAACAAAT---AAAATTTGTAAAGGTAATTGGACAACCCAAGAAGGA--AAACAAATGGCTCGAC--ATAC-AT---TA-GTCAAGTT-AAAGAA-AC-TTATTAGAGGGC---GAAAGAATGTTTTCTAGAAAAATA-----GTACTCGC---GCAGAAA-GGCTAT-ACGGAGC-ACTAACCGACC-AAACATAGTAATGAAGACCTGGCTAG-CA---GATC-GGGATAGTGGTTA-GGAT-CGGATCGAAACGTTGAGCAAGTTGGAAAAGCGAAATGCTTCAACAGCGCTTCTTATAGTGAAATAAACGTACGACAAAA-CC-AC-AATTACCAA-TAAATAAAA-CAAA--TAGTAAATAATCT-CACAAAAAAGGATCCATTGTGCGTCTGAATTAAGACATTAATCTTCCTA-CCACCGAATTGGACA-TCCCGGAAAACTCCAAAGCTAAAGTCCGAAAA-TAC-CAAAGA--GA--ACAGATCG------TCG-AACTGATA---G-AAATGA-CGACAGCAACCCAA-GG---AATTAAGCCGAGTACG-----GTTGAGTC-CAACTC--G-GAATGCAAAT-AGTCGC----TCTGATAGTTTATGTATCATCATCCGACAGATTTTTTAACGAAAC-TTCAATTTGGTGAAACAACCATTACCAGACCCCTTGTATTC--TTTTGCATT----GGA--TAAAAGCTC-TTACCCCAGTCT--CT--GAAAGAACCGCGCGAATGTCATT------GAAAAT-CTTAACA--AACGTCATGAAAAGAAGTAGACCACGGAAATGTGTATTGCGAAA-GATGGATTGCTTGGTCC-T-GAAATTAAT-A--ATTTTTTTCTCACATCCATTTACACAAATCGAT-AAACAC-ACATTCATAGCCGAAAGTACTGCTATC--AT-CGAAACTTGGT--CGAAAT---GC-TGTG-TTTCATATTGGG---A---GGATGGAAA--GA---C--GC-TTTTTG-AAAAT---CTGCAAAAGCACT-CCAGTATTTTA-TGGTATC-G--ATAGAT----TGA--GACATTTT-T---GCCAT-CTGA--CGG-AAA--TGAA-AAGAACTTAAAATC-ATTTCAT--AAAACCG-CGAACTGA------ATTTAACATCCGAATAT-TCAGCT-TGA-CCGTGC-GCCA--------A-CTAAGA-CAATAACGGATTTCC-TGAT---G-T-ACGAT-TCAA--AAC---ACGGATT-CCTTTCT--CAGACCTTTA-TTGC----AT-AC-C-TAC---GTAA------A------CATA--TACT----------AT-AAAACTCTAACTCA--------CC-GAA-C-C-CACAAGAAAG------CGTAT-TCCT-TT--GACT-TCGGTCG-ATCGTGCGGC--GT-AAAA-----GTTACGAC--TGAA---AACAC---TCAG--TTTAA--AAC-TG---A--AGA---AATCA-AAA---ATAACTTA----AGAAA--GCGGT---TA-TTAGAT-ATGAT---T--GAAAAAGAA-CTCAT-A-AA-GT--A--T--A-CTCG-ACCGATCAA--CTCCA-TAA-C-ACAGAAAA----GCGAG--AAGCAG-C-TTATCG-TGTTCCCC-TTGTTAGTAA---ACT-A-TC-TAAA--GACTCC-CAAATATTCATGAA---TTAAAA-AAAAAAAAATTCGAAAAAAAAA-TCTTGAG
gi|3 : cGAAAACGAAGCTATAAAATCTAACATA------AC-AAAAGAAAAAGAAGTAACCATCTTGTC-TTCCAGGAAA-GTAA--A---TAAGCAATTACGCTTAGTTGAGAAAAGGGTTGAAATTTGTACCGACGATGCAAAATATCGATTTTAATATACTCA---GTTG-T--------------TAAC-GGATT-AAAAAACATGAGAACGTAAGA-TACGTCTGTGGGGATATTTTTTTTTTC--GAATAAAGAATCCGAGAAAGAATCATCTTCAAGTAATGATG--AAG-GTTACAAATGTGAAAA-TTATAAAGATAATTGGACACCGGAAGAAGGAAGAGACAAATGGATC-ATGAAAAG-AT---TA-GAGTAGTCAAA-GAAGACGTAATTAA------GAAAAAGGAATTTTTCTTG--CAATACTTTATTACGCGCGGCAAAGAAAGGGCTATGAAAGAACTAGTGACCGACCAAAACATAGTTAT-TAGACCTG--CAGACAAAGGATCTGGGATAACGATAATGGATTCGGATAAATACGTCGATCAAG-TAGAAAAT-GAAATGC-TTATA-GTGCGTCTTACAGTGAAATAAA-GTACGGCAAAAGCAAACAAATTACCAATAAAATGAAATAAAA---AGTAAATAATATACATGAAAAAGGACCCATT-T-CTTCTGAATTAAGACATT-ATTTC-CTACCCAGTGAAGTGA-TAGT-CAGGGATACTCC-AAGGTAA--TCC-AAAACTACACAA--AAAGA--ACAATCCGT----TTCGAA-CT-ATATAGGTAAATGGCCGACAAC-ATCCGACGGAAAAATC-AGCCCAGTACCGGTATGTTGAGTAGCAACTCTCGAGAGTGCAAATAG---------------AG-TTATGTACAAG-ATACTACAGATTTTTAAAAGAAACTTTTAATT--GTAAAGTAACCATTACCAGA-TTCCTCTGTTCTATTCTGTA-TATGTGGACGTGAAAGTACTATACCTCAGTATACC-AGAAAAAAAGCTCGCG-ATATCATTTTTTTTAAAAAGGCAGTACAAGAGCGTCATAAATAAAAATA---------------TATTA-GAAATGATGGA-TGCT--GTTCCT-GACA----------------------------TT-----AAT-AAT-AAACACTACATTCAGA-CTGAAGGaagcctgacgcccctcaaaaatgctttcccaaa
gi|10 : --TGAGGAATTAAACTT-GTTGGTACAAGTATTGAAATGTATACCCAAACAGCAAAACATTGAATTTA-----TTCGTGCATGG-TTTTTTTTGGGGGGGGGGGCGGATTTAAAAA-CATGGAAA-GTTAGA-TGCGTTTGGGGGAATTTTTTTT----C--AAA-AAAGACTACAAAAATGAACTATCTTCAATTAATGGTG--AAAGGTTGCATGTTTAAAAAAATC--------AT----------AAGAATGAAGAGACAAATGGCTCGATTAATACGATACATATGGCAAGTCA----TACACTTTATCTGAGGATTAAGAAgaggggaataaatcctttttttttttatttaaaaacctaccagtattttaagtacaatatattgatgacatttttttggcatctgaactggaacagaagaactacaaataatccgcaaatgatatactagtacatccaaacagtcaggctgacctgcgacaatacaatatcaaattgatttccttgatgtaacgatctcaataaagacgtatttatttcttctgctttatattgcaaacctatcgataaacatatgtaccttaataaaagctctaactatcccgaatccacaaaaattgctattccctttgaatttagtctaattgcgcgtaaaatatgctccacaaatgaaaaatgccagattcaacgaaagtaaataataaaaaaaaaaaaacttaagaaaac
gi|5 : AA-TCC-AAAAATACACAA--A--GAGAACAATCCGTGCGTTTCGAA-CT-ATA---GTAAATG-CCAACAGC-ACCCGACGGAAAAATT-AGCCGAGTAC------GTTGAGTCACAACTC--GAGAAAGCAAAT-AGTCGC----T-TGATAG-TTATGTACAAG-ATACGACATAATTTTTTAAGAAACTTTCAATT--GTGAAACAACCATTACCAGA-CCCTTGTATTCTTTTTTGCA-T----GGATGTGAAAGCTCTTTACCCCAGTATACCTTGAAAAGAAGCGTGCG-ATGTCATT------AAAAATGCTTTACAAGAACGTCATGAAAAGAAGTAGA-CACGGAAA-GTGTA-TA-GAAATGATGGA-TGAT--GT-CTT-GATAATAATAA--ATTTTAGT----------TTT-----AAT-GAT-AAACACTA-ATTCAGA-CCGAAGGTACCGCTATCGGAT-CGAAACTTGGT--CATAACTACGCTTGTG-TTT-ATAT--GG---G---GGATGGG----AAAATC--C--TTTTTGAAAAAT---CTG--AAAG--CTACCAA-ATTTTA-T-GTA-C-G--GTATAT----TGA-TGACA-TTT-T---GGCAT-CTGGA-CGG-AAC--AGAAGAATA---TAAA--CAATTTCAT--AAAACCG-CGAA---G------AAT--ACATCCGAATAT-g
gi|17 : -ACCCAACGGAAAAATT-AGCCGAGTAC------GTGGAGTCACAACTC--GAGAATGCAAATAAGT
gi|4 : tatatatatatatatatatCGCAGATC--GAAAGTGCGAATAGATCTCAAGAT-TGATAG-TTATAT
gi|4 : aattgatgctgttcttgataatgataaataaacattacattcagactgaagggaccgctattggatcaaaacttgacgaccgtattgcatgggggtgggtgggagcaaatcttctttttttttaaatctgaaaagctatccgatatgttgatgacattttggcatctggatcggaacaaaaccgcgaataaagtacatcagaacattcagctttctctacggctacaacacatatctaacaccaaaaATTGA-TGCT--GTTCTT-GATAATGAT-A--A------------------------------AT-AAACATTACATTCAGA-CTGAAGGGACCGCTATTGGAT-CAAAACTTG--------ACGA-CC--GTA--TT-GCAT--GG---GGGTGGGTGGGAG--CAAATCTTCT-TTTTTTTTAAAT---CTG-AAAAG--CTATC----------------C-G--ATATGT----TGA-TGACA-TTT-T---GGCAT-CTGGATCGG-AAC--AAAA-----------------------------CCG-CGAA-TAA------AGT--ACATCAGAACAT-TCAGCT-TTC-TC-TACGGCTACAACACATATCTAACA-CCAAAACGtatattgtatgtacattttaaaaaagaaagaaagccggatttccttgatataatgattttaataacagaaggcttccctttctactgacttttactgcaataaaactctaacgataaagatacacgtatgtacatgtatcataacaaaagctctatccgtccagaatctacaacaaacctaccccctttggacttatcctccgtgcgcttagatgttctacggaatttaaaatactagattcaacgaaaggaactaaagagaatcttagaaaacatgcttatttagataatgacgaagaaaaaaacccttttaaaatacacaaatctcctaaactacagggaaaatacgaagcggtataactgttgtcttttgtggtaaattgttct
gi|7 : a-TGCT--GTCATTCGATAATAAT-ATAATTATAGT----------TTA-----AAT-GATTGAACACTACATTCAG--CC-AAGGTACCG-TA-CGGATGCGAAACTTGGTGCCGTAA-TACGCTTGTGGTTT-TTAT--GGCAGG---GGATGG--A--GAAATC---T-TTTTTGAAAAAT---CTG--AAAG--CGTTCAGTATTTAC-T-G-A-C-GAAGTATA-----TGATTGACA-TTT-T---TG-ATACT-GACCGGAAACAGAGAAGAAGA--TTAAA--CAATTTCATACAAAACCGCCGAA-TGA------AAT--A-ATCCCGATATATCAGAT-TGA-CCATGC-GCC---------ATCTAATA-CAAAAACGGATT---CTGAT---GTTCACGAGCTCAAT-AAAGA-ACGGAT---CCTTCT-A-AG-CTTGTATTTGC----AA-AC-CATACGCGAT-A------A------CATATGTACCT------TAAATAAAACTTCTAAC-CA-C------CC-GAATC-CACA-AAAcagatcgaaagtgcgaatagatctcaagattgatagttatattatattgtatgtacattttaaaaaagaaagaaagccggatttccttgatataatgattttaataacagaaggcttccctttctactgacttttactgcaataaaactctaacgataaagatacacgtatgtacatgtatcataacaaaagctctatccgtccagaatctacaacaaacctaccccctttggacttatcctccgtgcgcttagatgttctacggaatttaaaatactagattcaacgaaaggaactaaagagaatcttagaaaacatgcttatttagataatgacgaagaaaaaaacccttttaaaatacacaaatctcctaaactacagggaaaatacgaagcggtataactgttgtcttttgtggtaaattgttct
gi|9 : -ATA---GG---G---GGATCGGAACCAAAACA--TTATTTTTGAAAAAAAAACTT-AAAAG--CTAC--ATATGTTACT-GTA-CCG--ATACATGTAATGA-AGACG-TTT-TTG-GAAAT-CTGGATCAG-AAC--AGAAGAAC--CTTAAAA-CAATT-----------------------------AT--ACATTC-----------CTATGAACC-TG-----A--------AC--AATAACCAAAACAGAGCTCCT-GAT---G-TAAAAAACTCAATTAACGGCGCGCATT-CTCTTCTCACTGATTAATA-TTGC----AA-CG-C-TACTCGATAATATAT-G------CACATGTACCT------T--AT-AAAGCTCTGAT-TC-C------CT-GAACCAC-CA-AAGAA----------TACATCCC-TTT
gi|3 : ---G---GGAGGGGAA--TAAATC--CT-TTTTTTTTTTAT---TTA-AAAAC--CTACCAGTATTTTA-A-GTA-C-A--ATATAT----TGA-TGACA-TTT-TTTTGGCAT-CTGAACTGG-AAC--AGAAGAACTAC--AAA--TAAT-----------CCG-CAAA-TGATATACTAGT--ACATCCAAACAG-TCAGGC-TGA-CC-TGC-GACA--------ATACAATATCAAA--TTGATTTCCTTGAT---G-TAACGATCTCAAT-AA-AG-ACGTATT-TATTTCT-TCTGCTTTATA-TTGC----AA-AC-C-TAT-CGATAA------A------CATATGTACCT------T-AATAAAAGCTCTAAC-TATC------CC-GAATC-CACA-AAAATTG------C-TAT-TCCC-TTTGAATT-T-AGTCT-A-ATTGC-GC--GT-AAAATAT--GCT-CCAC--AAAT--GAAAAATG-CCAG-ATTCAACGAAAGTA---AATAATAAAAA--A-AAA---AAAACTTA----AGAAAAC
gi|11 : gaaaacgaagctataaaatctaacataacaaaagaaaaagaagtaaccatcttgtcttccaggaaagtaaataagcaattacgcttagttgagaaaagggttgaaatttgtaccgacgatgcaaaatatcgattttaatatactcagttgttaacggattaaaaaacatgagaacgtaagatacgtctgtggggatattttttttttcgaataaagaatccgagaaagaatcatcttcaagtaatgatgaaggttacaaatgtgaaaattataaagataattggacaccggaagaaggaagagacaaatggatcatgaaaagattagagtagtcaaagaagacgtaattaagaaaaaggaatttttcttgcaatactttattacgcgcggcaaagaaagggctatgaaagaactagtgaccgaccaaaacatagttattagacctgcagacaaaggatctgggataacgataatggattcggataaatacgtcgatcaagtagaaaatgaaatgcttatagtgcgtcttacagtgaaataaagtacggcaaaagcaaacaaattaccaataaaatgaaataaaaagtaaataatatacatgaaaaaggacccatttcttctgaattaagacattatttcctacccagtgaagtgatagtcagggatactccaaggtaatccaaaactacacaaaaagaacaatccgtttcgaactatataggtaaatggccgacaacatccgacggaaaaatcagcccagtaccggtatgttgagtagcaactctcgagagtgcaaatagagttatgtacaagatactacagatttttaaaagaaacttttaattgtaaagtaaccattaccagattcctctgttctattctgtatatgtggacgtgaaagtactatacctcagtataccagaaaaaaagctcgcgatatcattttttttaaaaaggcagtacaagagcgtcataaataaaaatatattagaaatgatggatgctgttcctgacattaataataaacactacattcagactgaaTATCTTA-T-GTA-C-A--ATAATT----TGA-TGACA-TTTAT---TGCAT-ATAGACCGC-CAC--AGAGGAA---CTTAAA--CAA-----------ACT----AA-TGC------AAT--A---------------GCC-TAA-AC-TGC-AACC--------ATCTAG------GAA--GATTTTATT-ATTTTG-TAACGATCTCAAT-AACAT-ACGGATT-CCTTTAT-ACTGATTTATG-TTGT-----A-TC-A-TAC-CGATAA--------------------ACCT-------------AAGC---AAC-CACC------CC-GAATC-C-AC-ATAAAAC------C-TAT-TCTT-TTT
gi|19 : ATCCGAATAT-TCAGCT-TGA-CC-TGC-GCCA--------ATCt
gi|6 : aattg-TCAGCT-TGA-C--TGC-GCCA--------ATCTAATA-CAAAA-CGGATT-CCTTGAT---G-TAACGATG-CAAT-AACAG-ACGGATT-CCTTTCT-ACAGACTTGTA-TTG-----AA-AC-C-TAC-CGACAA------A------CAT--GCACCT------T-GATAAAA-CTCTAAC-CA-C------CCCGAATC-CACA-AAAAAAG------C-TAT-TCCC-TTTGAA-T-T-GGTCT-G-CGTGC-GC--GT-AGAATAT--GTT-CAAC--AGAA--GAAAACTA-TCAG-ATTCAACGAAA--G---A--AAT----A--A-AAA---ATAACTT-----AGAAAA-GCGGG---TA-TTAGATAATGATA--TAG--AAAAGAACCTCATCA-AA-GTAGA--TAAA-CTCG-A-CGATCAAATCTCCTAAAA-CTACA-AAAA-AAGACG----AAGCAG-TATAATCG-TGTTCCCC-TTG-TAGTAA---ACT-ATTC-TAA---GACTTC-C-CATATTCATAAA--TTTAAAA-AA---------TAACAAAAAATTTC-TGAG
gi|13 : AATA-TCAAAACAGAGTTCCTTGAT---G-TAAAGATCTCAAT-AGCGG-GCGGATT-CCTTTCT-ACTGATTAATA-TTGC----AA-AC-C-TAC-CGATAA------ATATATGCACATGTACCT------T-AATAAAAGCTCTGAT-TA-C------CCTGAATC-CACA-AAATA--------C-TA--TCCC-TTTGGACT-T-GGTGT-A-TATGC--CAAGA-AGAATAT--GTT-aactctgaccgctcaaaatgcttccaa
gi|4 : AAAGCCGGATTTCCTTGAT---A-TAATGATTTTAAT-AACAG-AAGGCTTCCCTTTCT-ACTGACTTTTA-CTGCAATAAA-ACTC-TAA-CGATAAAGATACA------CGTATGTACATGTATCAT-AACAAAAGCTCTATC-CG-T------CCAGAATC-T-AC-AACAAAC------C-TAC-CCCC-TTTGGACT-T-ATCCT-C-CGTGC-GC--TT-AG---AT--GTT-CTAC--GGAATTTAAAA-TA-CTAG-ATTCAACGAAA-GG---A--ACT---AA--AGAGA---AT--CTT-----AGAAAACATGCT---TATTTAGATAATGACG--AAGAAAAAAACC-CTT-TTA-AA-ATACA------------------CAAATCTCCT-AAA-CTACAGGGAA-AATACG----AAGCGG-TATAACTGTTGT--CTT-TTG-TGGTAA---ATT-GTTC-T
gi|8 : aattgatgctgttcttgataatgataaataaacattacattcagactgaagggaccgctattggatcaaaacttgacgaccgtattgcatgggggtgggtgggagcaaatcttctttttttttaaatctgaaaagctatccgatatgttgatgacattttggcatctggatcggaacaaaaccgcgaataaagtacatcagaacattcagctttctctacggctacaacacatatctaacaccaaaacgcagatcgaaagtgcgaatagatctcaagattgatagttatattatattgtatgtacattttaaaaaagaaagACTT-TA-TTGG----AGCGC-C-TAC---ATAA------T------TATAT---------------ATAAAAGCTCGAAC-CA-CGGAGATCC---ATC-T-CA-AAAAAAAAAAAAAC-TAT-TCCCCTTTGGACTAT-GGTCTTA-CGTGC-GT--GTTATAATATTCGTT-CAACTTA-AA--GAAAA-TA-CCA-AATTAAAAAAAA--A---C--AAC---AA--C-AAC---A-AACGTATAGTAGAACAC-CGGTGAATAT---GATAATGAGAAATAGAAAAAGAAA-CTCATCATAATGTAGAACTGAATCTCGGACTGATCTAATCTCCA-AAAGCTAT-GAAAA-AAGACG----AAGCAGATAGAATCG-TGTTCCCCATTG-T--TACGTTACTAATTCTTAAAGAAATTTC-C-AATA-TCATAAA----TAAAA-AA
gi|16 : C-GT--AT-AGAATAT--GTT-CAAC--AGAA--GAAAGCTAGTC-GAG-TCAACGGAA-AAGAGA--AAT---GA--A-AAACGGA-AATCTG----AGAAA
gi|12 : TCAGCGAAA-GA---A--AAT---AA--A-GAA----TAATTTA----AGGAA---C--------TTGAGATAATGATG--TAGAAGGAA-AA-TTTATAA-AA-GTAGA--TAAA-CTCG-AGCAATCGAATTTCGT-AAA-CTA-ATAAAACAAAACAATCGAAGC---------CG-TGTTCATT-TTG-TGGTAA---ACT-ATTC-TAAAG-CATTTCAC-AATATTCACAAAATTAAAAAA-AAA-------TC
gi|14 : -AAA---ACAACTTA----GGAAAACGCAGT---TATTTACATAATGATA--TAGAAAA-AGAA-CTCATCA-AA-GTAGA--TAAA-CTCG-ACCGATCTAATCTCCTAAAA-CTACAG-AAA-AAGACGA---AA-CAA-TATAATCG-TGTTCCCT-GTG-TAGTAA---ACT-ATTC-TAAAG-GAC
gi|18 : TTAGATAATGAGA--TAGAAAA-AGAA-CTCATCA-AA-GTAGA--
gi|15 : C-C-AATATCCTCAAAATTAAAAAAGAAA-------TCGACAAAAAA-TTCTTGAG
Alignments
lowQualScore : 2 2 333333 11 22 222 11 1 1 2 77777777777777777777777777777777777777 11 1 33333 1 11 1 333333 111 22222222 11 4444444 222 1 111 1 1 2 1 1 111111 1 4444444444 1111 22 33 11 1 2 22 11111 2 1 1 22 222 1 1 333 2 222222222 1 1 1 2 11111 11 22222 1 1 111 333333 11 1 1 1 1 11 1 222 1 222222 1 111 1 222222 1 1 1 555555555555555555555555555555 111111111 1111111 1111 111 1111 111 333333333333333333333333 1111111111 11111111 1111 333333333333 11111111 1 1111111111 11 1111111 11111 11111 111 1 2222 111 222222 1
lowQualScore : 2 0 0 0 1 7 111111 6 7 6 0 00 0 44 0 000 33 3 2 0 0 0 1 1 2 1 33 2 66666666666666666666666666666666666666 33 3 2 9 0 0 55555 0 33 0 9 777777 55 333 4 3 77777777 11 3 3 6666666 2 2 444 3 0 777 0 1 3 6 3 3 444444 7 0 22 1 0000000000 1 1 5555 6 6 6 7 1 0 7 1 44 00 7 11 7 0 1 7 5 77 1 0 1 3 44 55555 1 0 3 0 4 7 4 7 0 44 555 1 2 2 0 777 1 3 6 6 6 1 1 555555555 0 1 2 88 0 0 0 3 88888 33 44444 0 0 777 3 99 1 0 8 111111 9 11 0 44 0 0 0 8 0 66 3 33 0 333 0 222222 0 3 3 777 3 0 888888 2 3 3 0 2 0 0 3 0 3 6 99 3 1 6 3 444444444444444444444444444444 6 6 6 0 8 777777777 3 3 88 6 99 2222222 888 2222 77 5 000 5 1 77 1 0 777 0 5 5 66 0000 55 5 5 555 5 0 3 5 0 66 444444444444444444444444 5 6666666666 66 2 2 4 4 4 8 4 66666666 0 8 0 0 777 4 0 4 666 44 4 2 5 4 2222 4 4 8 333333333333 0 66666666 4 4 4 8 2 9999999999 00 4 4 4 5 5 888 5 66 5 0 66 5 1 77 888 7 11 5 2 888 888 5 5 9999999 4 00000 33333 888 000 5 777 3 0 5 1 5 5 8888 5 5 4 1 1 5 00 5 7777 0 5 1 5 5 5 2 000 5 5 99 6 6 88888 6 000000 0
lowQualScore : . . . . . . ...... . . . . .. . .. . ... .. . . . . . . . . . .. . ...................................... .. . . . . . ..... . .. . . ...... .. ... . . ........ .. . . ....... . . ... . . ... . . . . . . ...... . . .. . .......... . . .... . . . . . . . . .. .. . .. . . . . . .. . . . . .. ..... . . . . . . . . . .. ... . . . . ... . . . . . . . ......... . . . .. . . . . ..... .. ..... . . ... . .. . . . ...... . .. . .. . . . . . .. . .. . ... . ...... . . . ... . . ...... . . . . . . . . . . . .. . . . . .............................. . . . . . ......... . . .. . .. ....... ... .... .. . ... . . .. . . ... . . . .. .... .. . . ... . . . . . .. ........................ . .......... .. . . . . . . . ........ . . . . ... . . . ... .. . . . . .... . . . ............ . ........ . . . . . .......... .. . . . . . ... . .. . . .. . . .. ... . .. . . ... ... . . ....... . ..... ..... ... ... . ... . . . . . . .... . . . . . . .. . .... . . . . . . . ... . . .. . . ..... . ...... .
lowQualScore : 5 0 0 7 0 3 333333 7 3 7 7 77 7 33 7 777 88 2 5 0 0 0 0 0 5 0 00 0 88888888888888888888888888888888888888 88 2 5 2 0 2 00000 0 88 0 8 000000 00 555 0 2 88888888 00 2 2 5555555 5 5 888 2 0 555 0 0 3 7 3 3 000000 3 7 00 0 7777777777 0 0 0000 7 7 7 3 0 7 3 0 33 00 3 33 3 7 0 3 3 33 0 7 0 7 33 00000 0 7 3 7 0 3 0 3 7 77 777 0 3 0 7 777 0 7 0 7 7 0 0 333333333 7 0 3 33 0 0 0 2 55555 88 55555 0 0 555 2 00 4 8 0 000000 6 00 8 66 0 0 0 8 0 88 2 88 0 222 0 222222 5 2 2 555 2 0 888888 5 2 2 2 5 0 0 2 0 2 7 22 7 7 7 5 333333333333333333333333333333 7 7 7 8 0 000000000 2 8 88 7 22 3333333 999 3333 99 4 000 7 4 99 4 1 222 1 0 0 99 6666 44 0 0 666 0 2 4 0 4 99 444444444444444444444444 0 6666666666 99 5 9 0 4 4 9 4 11111111 8 9 6 7 888 4 1 4 222 66 4 3 6 0 5555 0 0 0 000000000000 7 88888888 0 1 0 0 0 2222222222 44 4 4 4 7 7 000 0 99 0 1 99 0 0 99 666 9 99 7 5 888 888 9 0 5555555 4 77777 00000 888 000 0 888 2 2 0 4 0 0 4444 7 7 3 0 4 7 99 7 7777 1 7 4 7 7 7 3 000 7 7 22 7 7 77777 7 888888 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACTTTACCCCNTGAAGAAAAAGAGTTAGAAAACGAAACTATAGAATCTAACATAC-ATG-ACCAAAAGAAAAGGAGGTAATCATCCTGTC-ATCCAAGAAAGTTAACAAC--TGAGCAATTAAGNTT-GTTG-G-ANAAGGNCTGAAATNTGTACCGACANAGCAAAATATTGATTTTA-----CTCG---ATTG-TT----------------AA-GGA--TTAAAAAACATGGGAACGTAGGAT-GCGTCTGCGGGAATA----TTTTTT-C--GAA-AAAGAATCCGAGAATGAACCATCCTCAAGNAATGACGAA-GGTNACAAATGTGAAAA-TTT-TAAAGGTAATTGGACA---CC-GAAGAAGGAAGAGACAAATGGCTCGA-TGAATAC-AT---TA-GACAAGTCAAA-GAAGAC-TTA-TTAGAGGGC-GAAAAAGAATTTTTTCTAGAAAAATA---TATTACGCGCGGCGAAGAAAGGGCTATGAAGGAGCTACTAACCGACCAAAACATAGTAAT-AAGACCTG--CAGACAAGGGATCTGGGATAGCGGTNATGGAT-CGGATAAATACGTCGATCGAGT-GGAAAAG-GAAATGCTTCAANAGCGCTTCTTATAGTGAAATAAA-GTACGACAAAAGC-AACAAATTACCAAT-AAATAAAA-AAAAT--AGTAAATAATATGCACGAAAAAGGATCCATT-T-CGTCTGAATTAAGACATTA-TCTTCCTACCCACCGAAGTGGACA-TCC-GGAAAACTCCAAGGCTAAA-TCC-AAAA-TACACAA--A--GA--ACAATCCGT----TTCGAA-CT-ATA---GTAAATGGCCGACAGCACCCGACGGAAAAATT-AGCCGAGTAC------GTTGAGTCACAACTC--GAGAATGCAAATAAGTCGCT-TGATAG-TTATGTA-CAAGATACGACA-GATTTTTNAAAGAAACTTTCAATT--GTGAAACAACCATTACCAGA-CCCTTGTATTC-T-TTTT-GCA-T----GGACGTGAAAGCTCTTTACCCCAGTATACC-T-GAAAAGAAGCGCGCG-ATGTCATT------AAAAATGCTTTACAAGAACGTCATGAAAAGAAGTAGA-CACGGAAA-GTGTATTA-GAAATGATGGA-TGCT--GTCCTT-GATAATAAT-A--ATTTTAGT----------TTT-----AAT-GAT-AAACACTACATTCAGA-CCGAAGGTACCGCTATCGGAT-CGAAACTTGGT--CGTAACTACGCTTGTG-TTT-ATAT--GG---G---GGATGGGAAN-AAATC--CTT--TTTTGAAAAAT---CTG-AAAAGCTA--CCAGTATTTTA-T-GTA-C-GA--TATAT----TGAT-GACA-TTT-T---GGCAT-CTGGACCGGAA-CAGA--AGAAN-A-CTTAAA--CAATTTCATA--AAACCGC-GAA-TGA------AAT--ACATCCGAATAT-TCAGCT-TGA-CC-TGC-GCCA--------ATCTAATA-CAAAAACGGATTTCCTTGAT---GT-AACGATCTCAAT-AACGG-ACGGATTCC-TTTCT-ACTGACTTGTATT-GCAA----AC-C-TAC-CGATAA-----A------CATATGTACCT------TAA-TAAAAGCTCTAAC-CA-CCC-GAATCCAC---------AAAAAAAGC-TAT-TCCC-TTTGGACT-T-GGTCT-A-CGTGC-GC--GT-AGAATAT--GTT-CAAC--AGAA--GAAAACTACCAGA-TTCAACG---AA---AGGA-AAT------AAA-AAA---ATAACTTA----AGAAAACGCGGT---TATTTAGATAATGATA--TAGAAAAAAGAA-CTCATCA-AA-GTAGA--TAAA-CTCG-ACCGATCAAATCTCCT-AAA-CTACAGAAAA-AAGACGA---AAGCAG-TATAATCG-TGTTCCCC-TTG-TAGTAA---ACT-ATTC-TAAAG-GACTTC-C-AATATTCATAAAATTANAAAA-AAA-----TCGAC-AAAAAATTCTTGAG
Reference ( family-5727 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACTTTACCCCCT-AAGAAAA-GAGTTAGAAAACGAAGCTNTAGAATCTAACATACCATG-ACCAAAAGAAAAGGAGGTAACCATCTTGCCCNTCCAGGAAAANTAACAAC--TGAGCAATTAAACTT-GTTG-G-ANAAGGNTTGAAATGTNTACCGACGNAGCAAAATATCGATTTTA-----CTCG---ATTG-TT----------------AA-GGA--TTAAAAAACATGGGAACGTAAGAT-GCGTCTGCGGGAAT-----TTTTTT-C--GAA-AAAGAATCCGAGAATGAACCATCTTCAANTAATGACGAA-GGTTACAAAT-TGAAAA-TTN-TAAAGGTAATTGGACA---C---AAGAAGGAAGAGACAAATGGCTCGA-T-AATAC-AT---TA-GNCAAGTCAAA-GAA-AC-TTA-TTAGAGGGC-GAGAAAGGANNTTTTCTNGAANAATACTTTANTACNCGCGGCGNAGAAAGGGCTATGACGGAGCTANTGACCGACCAAAACATAGTNATGNAGACCTGGCCAGACAAAGGATCTGGGATAGCGGTNATGGATTCGGATCGANACGTCGANCAAGTTGGAAAANCGAAATGCTTCANNAGCGCNTCTTACAGTGAAATAAACGTACGGCAAAAGCNAACAAATTACCAATNAAATGAAATNAAAT--AGTAAATAATNTACACGAAAAAGGACCCATTGTGCNTCTGAATTAAGACATTAATCTCCCTACCCANCGAANTGGACAGTCCNGGGANACTCCAAAGNTAAA-TCC-AAAA-TACACAA--A--GA--ACAATCCGT----TTCGAA-CT-ATA---GTAAATGGCCGACAGCACCCGACGGAAAAATT-AGCCGAGTAC------GTTGAGTCGCAACTC--GAGAATGCAAATAAGTCGCT-TGATAG-TTATGTA-CAAGATACGACA-GATTTTTTAAAGAAACTTTCAATT--GTGAAACAACCATTACCAGA-CCCTTGTATTC-T-TTTT-GCA-T----GGACGTGAAAGCTCTTTACCCCAGTATACC-T-GAAAAGAAGCGCGCG-ATGTCATT------AAAAATGCTTTACAAGAACGTCATGAAAAGAAGTAGA-CACGGAAA-GTGTATTA-GAAATGATGGA-TGCT--GTCCTT-GATAATAAT-A--ATTTTAGT----------TTT-----AAT-GAT-AAACACTACATTCAGA-CCGAAGGTACCGCTATCGGAT-CGAAACTTGGT--CGTAACTACGCTTGTG-TTT-ATAT--GG---G---GGATGGGAAN-AAATC--CTT--TTTTGAAAAAT---CTG-AAAAGCTA--CCAGTATTTTA-T-GTA-C-GA--TATAT----TGAT-GACA-TTT-T---GGCAT-CTGGACCGGAA-CAGA--AGAAN-A-CTTAAA--CAATTTCATA--AAACCGC-GAA-TGA------AAT--ACATCCGAATAT-TCAGCT-TGA-CC-TGC-GCCA--------ATCTAATA-CAAAAACGGATTTCCTTGAT---GT-AACGATCTCAAT-AACGG-ACGGATTCC-TTTCT-ACTGACTTATATT-GCAA----AC-C-TAC-CGATAA-----A------CATATGTACCT------TAA-TAAAAGCTCTAAC-CA-CCC-GAATCCAC---------AAAAAAAGC-TAT-TCCC-TTTGGACT-T-GGTCT-A-CGTGC-GC--GT-AGAATAT--GTT-CNAC--AGAA--GAAAACTACCAGA-TTCAACG---AA---ANGA-AAT------AAA-AAA---ATAACTTA----AGAAAACGCGGT---TATTTAGATAATGATA--TAGAAAAAAGAA-CTCATCA-AA-GTAGA--TAAA-CTCG-ACCGATCNAATCTCCT-AAA-CTACAGAAAA-AAGACGA---AAGCAG-TATAATCG-TGTTCCCC-TTG-TAGTAA---ACT-ATTC-TAAAG-GACTTC-C-AATATTCATAAAATTNTAAAA-AAA-----TCGAC-AAAAAATTCTTGAG
gi|1 : AACACTTTACCCCATGAAGAAAAAGAGTTAGAAAACGAAACTATAGAATCTAACATAC-ATGTACCAAAAGAAAAGGAGGTAATCAACCTGTC-ATCAAAGAAA-TTAACAAC--TGAGCAATTAAGGTT-GTTG-GGAAAAGGTCTGAAATTTGTACCGACAAAACAAAATATTGATTTTA-----CTCA---ATTG-TG----------------AA-GGGATTTAAAAAACATGGAAACGGAGGAT-GCGTCTGCGGGAATA----TTTTTT-C--GAA-AAAGAATCCGAGATTGA------CTCAAGAAATGACGA---GTAACAAATATAAAAAATTC-TAAAGGTAATTGGACA---CCCGAAGAAGGAAGAGACAAATGGCTCGA-TGAATAC-AT---TA-GACAAGTTAAAAGAAGACGTTA-TTAGAGGGCTGAAAAAGAATTTTTTCTAGAAA-------TATTACACGCGGTGAAGAAAGGGCTATGAAGGAGCTACTAACCGACCAAAACATAGTAAT-AAGACCTG--CAGACAAGGGATCTGGGATAGTGGTCATGGATGCGGATAAATACGTTGATCGAGT-GGAAAAG-GAAATGCT-CAAAAGCGCTTCTTATAGTGAAATAAA-ATACGACAAAAGCCAACAAATTACCAAATAA-TAAAA-AAAATTTAGTAAATAATATGCAC-AAAAAGGATCCATT-T-CGTCTGAATTAAGACATTA-TCTTC-TACCCACCGAAGTGG-CA-TCC-GGAAAACTCCAA-GCTAAA-TCC-AAAA-TACACAA--A--GG--ACAATCCGT----TTCGAAACT-ATA---GTAAATGGCCGACAGCACCCAACGGAAAAATT-AGCCGAGTAC------GTTGAGTCACAACTC--GAGAATGCAAATAAGTCGCT-TGATAG-TTATGTA-CAA-ATACGACA-GAATTTTGAAAGAAACTTTCAATT--GTGAAACAACCATTACCAGA-CCCTTGTATTC-T-TTTTTGCA-T----GGATGTGAAAGCTCTTTACCCCAGTATACC-TAGAAAAGAAGCGCGCG-ATGTCATT------AAAAATGCTTTACAAGAACGTCATGAAAAAAAGTAGA-CACGGAAA-GTGTATTA-GAAATGATGGA-TGCT--GTCCTT-GATAATAAT-A--ATTTTAGT----------TTT-----AAT-GAT-AAACACTACATTCAGA-CCGAAGGTACCGCTATCGGAT-CGAAACTTGGT--CGTAACTA-GCTTGTG-TTT-ATAT--GG---G---GGATGGGAAA-AAATC--CTT--TTTTGAAAAAT---CTG-AAAAGCTA--CCAGTATTTTA-T-GTA-C-GG--TATAT----TGAT-GACA-TTT-T---GGCAT-CTGGACCGGAA-CAGA--AGAAG-AACTTAAA--CAATTTCATA--AAACCGC-GAA-TGA------AAT--ACATCCGAATAT-TCAGCT-TGA-CC-TGC-GCCA--------ATCTAATA-CAAAAACGGATTTCCTTGAT---GT-AACGATCTCAAT-AACAG-ACGGATTCC-TTTCT-ACAGACTTGTATT-GCAA----AC-C-TAC-CGATAA-----A------CATATGTACCT------TAA-TAAAAACTCTAAC-CA-CCC-GAATCC-C---------AAAAAAAGC-TAT-TCCC-TTTGGACT-T-GGTCT-A-CGTGC-GC--GT-AGAATAT--GTT-CAAC--AGAA--GAAAACTATCAGAATTCAACG---AA---ATAA-AAT------AAA-AAA---ATAACTTA----AGAAAACGCGGT---TATTTAGATAATGATA--TAGAAAAAAGAA-CTCATCA-AA-GTAGA--TAAA-CTCG-ACCGATCAAATCTCCT-AAA-CTACAGAAAA-AAGACGA---AAGCAG-TATAATCG-TGTTCCCC-TTG-TAGTAA---ACT-ATTC-TAAAG-GACTTC-C-AATATTCATAAAATTTTAAAA-AAA-----TCGACAAAAAAATTCTTGAG
gi|10 : ccaacaaatgtttaattcaaccgataca--TGAGGAATTAAACTT-GTTG-GTACAAGTATTGAAATGTATACCCAAACAGCAAAACATTGAATTTA-----TTCGTGCATGG-TTTTTTTTGGGGGGGGGGGC-GGA--TTTAAAAACATGGAAA-GTTAGAT-GCGTTTGGGGGAAT-----TTTTTTTC--AAA-AAAGACTACAAAAATGAACTATCTTCAATTAATGGTGAAAGGTTGCA----TG------TT-TAAAAA-AAT----CA---T---AAGAATGAAGAGACAAATGGCTCGATT-AATACGATACATATGGCAAGTCA
gi|11 : TATCTTA-T-GTA-C-AA--TAATT----TGAT-GACA-TTTAT---TGCAT-ATAGACCGCCA-CAGA--GGAA----CTTAAA--CAA-----------ACT----AA-TGC------AAT--A---------------GCC-TAA-AC-TGC-AACC--------ATCTAG------GAA--GATTTTATT-ATTTTGT-AACGATCTCAAT-AACAT-ACGGATTCC-TTTAT-ACTGATTTATGTT-GTAT-----C-A-TAC-CGATAA-----A------C--------CT-------------AAGC---AAC-CA-CCCCGAATCCAC----------ATAAAACC-TAT-TCTT-TTTtacactttatctgaggattaagaag
gi|12 : TCAGCG---AA---AGAA-AAT------AAA-GAA----TAATTTA----AGGAA---C--------TTGAGATAATGATG--TAGAAGGAA-AA-TTTATAA-AA-GTAGA--TAAA-CTCG-AGCAATCGAATTTCGT-AAA-CTA-ATAAAACAAAACAATCGAAGC---------CG-TGTTCATT-TTG-TGGTAA---ACT-ATTC-TAAAG-CATTTCAC-AATATTCACAAAATTAAAAAA-AAA-----TCt
gi|13 : AATA-TCAAAACAGAGTTCCTTGAT---GT-AAAGATCTCAAT-AGCGG-GCGGATTCC-TTTCT-ACTGATTAATATT-GCAA----AC-C-TAC-CGATAA-----ATATATGCACATGTACCT------TAA-TAAAAGCTCTGAT-TA-CCCTGAATCCAC---------AAAATA--C-TA--TCCC-TTTGGACT-T-GGTGT-A-TATGC--CAAGA-AGAATAT--GTT-
gi|14 : -AAA---ACAACTTA----GGAAAACGCAGT---TATTTACATAATGATA--TAGAAAA-AGAA-CTCATCA-AA-GTAGA--TAAA-CTCG-ACCGATCTAATCTCCTAAAA-CTACAG-AAA-AAGACGA---AA-CAA-TATAATCG-TGTTCCCT-GTG-TAGTAA---ACT-ATTC-TAAAG-GAC
gi|15 : C-C-AATATCCTCAAAATTAAAAAAGAAA-----TCGAC-AAAAAATTCTTGAG
gi|16 : cC-GT--AT-AGAATAT--GTT-CAAC--AGAA--GAAAGCTAGTCGA-GTCAACGGAAAA---GAGA-AAT------GAA-AAACGGA-AATCTG----AGAAAaactctgaccgccccaaatatgctttccaaaa
gi|17 : ACCCAACGGAAAAATT-AGCCGAGTAC------GTGGAGTCACAACTC--GAGAATGCAAATAAGT
gi|18 : tatatatatatatatatatTTAGATAATGAGA--TAGAAAA-AGAA-CTCATCA-AA-GTAGA--
gi|19 : ATCCGAATAT-TCAGCT-TGA-CC-TGC-GCCA--------ATC
gi|2 : aattgAACACTTTACCCCCT-AAGAAAA-GAGTTAGAAAACGAAACTCTAGAA-CTAACATACCATG-ACCAAAAGAAA-GGAG-TAATCAT--TGCCCATCCAAGAAAATTAACAACAATGAGCAAT--AAGTT-GTTG-G-ATAAGGTCTGAAAAGTTTACCGACATAACAAAATATTGATTTTA-----CC-----ATTGATT----------------AA-CGA--TTAAAA--CATTGGAACG-AGGATTGCTCCTGCGGGAAT-----TATTTT-CAAGAA-AAAGAATCCGAGA-TGA------CTCAGAAAATGACGAA-AGTAACAAAT---AAAA-TTTGTAAAGGTAATTGGACAACCC---AAGAAGGAAAA--CAAATGGCTCGA-C-A-TAC-AT---TA-GTCAAGTTAAA-GAA-AC-TTA-TTAGAGGGC-GA--AAGAATGTTTTCTAGAAAAATA-----GTACTCGCG---CAGAAAGG-CTAT-ACGGAGC-ACTAACCGACCAAA-CATAGTAATGAAGACCTGGCTAG-CA---GATC-GGGATAGTGGTTA-GGAT-CGGATCGAAACGTTGAGCAAGTTGGAAAAGCGAAATGCTTCAACAGCGCTTCTTATAGTGAAATAAACGTACGACAAAACC--AC-AATTACCAAT-AAATAAAA-CAAAT--AGTAAATAATCT-CACAAAAAAGGATCCATTGTGCGTCTGAATTAAGACATTAATCTTCCTA-CCACCGAATTGGACA-TCCCGGAAAACTCCAAAGCTAAAGTCCGAAAA-TAC-CAAAGA--GA--ACAGATCG------TCGAA-CTGATA---G-AAATGA-CGACAGCAACCCAAGG---AATTAAGCCGAGTACG-----GTTGAGTC-CAACTC--G-GAATGCAAAT-AGTCGCTCTGATAGTTTATGTATCATCATCCGACA-GATTTTTTAACGAAAC-TTCAATTTGGTGAAACAACCATTACCAGACCCCTTGTATTC---TTTT-GCATT----GGA--TAAAAGCTC-TTACCCCAGTCT--C-T-G-AAAGAACCGCGCGAATGTCATT------GAAAAT-CTTAACA--AACGTCATGAAAAGAAGTAGACCACGGAAATGTGTATTGCGAAA-GATGGATTGCTTGGTCC-T-GAAATTAAT-A--ATTTTTTTCTCACATCCATTTACACAAATCGAT-AAACAC-ACATTCATAGCCGAAAGTACTGCTATC--AT-CGAAACTTGGT--CG-AA--ATGC-TGTG-TTTCATATTGGG---A---GGATGGAAAG-A---C--GCT--TTTTG-AAAAT---CTGCAAAAGC-ACTCCAGTATTTTA-TGGTATC-GA--TAGAT----TGA--GACATTTT-T---GCCAT-CTGA--CGGAA-ATGA--AAAGA-A-CTTAAAATC-ATTTCATA--AAACCGC-GAACTGA------ATTTAACATCCGAATAT-TCAGCT-TGA-CCGTGC-GCCA--------A-CTAAGA-CAATAACGGATTTCC-TGAT---GT--ACGAT-TCAA--AAC---ACGGATTCC-TTTCT--CAGACCTTTATT-GCAT----AC-C-TAC---GTAA-----A------CATA--TACT---------A-TAAAA-CTCTAACTCA--CC-GAACCCAC----------AAGAAAGCGTAT-TCCT-TT--GACT-TCGGTCG-ATCGTGCGGC--GT-AAAA-----GTTACGAC--TGAA---AACACT--CAG--TTTAA-----AACTGAAGA-AAT-------CA-AAA---ATAACTTA----AGAAA--GCGGT---TA-TTAGAT-ATGAT---T--GAAAAAGAA-CTCAT-A-AA-GT--A--T--A-CTCG-ACCGATCAA--CTCCA-TAA-C-ACAGAAAA----GCGAG--AAGCAG-C-TTATCG-TGTTCCCC-TTGTTAGTAA---ACT-A-TC-TAAA--GACTCC-CAAATATTCAT-GAATTAAAAAA-AAAAAAATTCGAA-AAAAAAATCTTGAG
gi|3 : cGAAAACGAAGCTATAAAATCTAACATA------AC-AAAAGAAAAAGAAGTAACCATCTTGTC-TTCCAGGAAAGT----AAA--TAAGCAATTACGCTTAGTTGAG-AAAAGGGTTGAAATTTGTACCGACGATGCAAAATATCGATTTTAATATACTCA---GTTG-TT----------------AACGGA--TTAAAAAACATGAGAACGTAAGAT-ACGTCTGTGGGGATATTTTTTTTTT-C--GAATAAAGAATCCGAGAAAGAATCATCTTCAAGTAATGATGAA-GGTTACAAATGTGAAAA-TTA-TAAAGATAATTGGACA---CCGGAAGAAGGAAGAGACAAATGGATC-A-TGAAAAG-AT---TA-GAGTAGTCAAA-GAAGAC-GTAATTAA------GAAAAAGGAATTTTTCTTG--CAATACTTTATTACGCGCGGCAAAGAAAGGGCTATGAAAGAACTAGTGACCGACCAAAACATAGTTAT-TAGACCTG--CAGACAAAGGATCTGGGATAACGATAATGGATTCGGATAAATACGTCGATCAAGT-AGAAAAT-GAAATGCTT--ATAGTGCGTCTTACAGTGAAATAAA-GTACGGCAAAAGCAAACAAATTACCAATAAAATGAAATAAAA---AGTAAATAATATACATGAAAAAGGACCCATT-T-CTTCTGAATTAAGACATTA--TTTCCTACCCAGTGAAGTG-ATAGTC-AGGGATACTCCAAGGT--AA-TCC-AAAACTACACAA--AAAGA--ACAATCCGT----TTCGAA-CT-ATATAGGTAAATGGCCGACAACATCCGACGGAAAAATC-AGCCCAGTACCGGTATGTTGAGTAGCAACTCTCGAGAGTGCAAATAG-----------AG-TTATGTA-CAAGATACTACA-GATTTTTAAAAGAAACTTTTAATT--GTAAAGTAACCATTACCAGA-TTCCTCTGTTC-TATTCT-GTA-TATGTGGACGTGAAAGTACTATACCTCAGTATACC-A-GAAAAAAAGCTCGCG-ATATCATTTTTTTTAAAAAGGCAGTACAAGAGCGTCATAAA------TA--------AAA-ATATATTA-GAAATGATGGA-TGCT--GTTCCT-GACA----------------------------TT-----AAT-AAT-AAACACTACATTCAGA-CTGAAGGaagcctgacgcccctcaaaaatgctttcccaaa
gi|3 : ---G---GGAGGGGAAT-AAATC--CTT--TTTTTTTTTAT---TTA-AAAACCTA--CCAGTATTTTA-A-GTA-C-AA--TATAT----TGAT-GACA-TTT-TTTTGGCAT-CTGAACTGGAA-CAGA--AGAACTA-C--AAA--TAAT-----------CCGC-AAA-TGATATACTAGT--ACATCCAAACAG-TCAGGC-TGA-CC-TGC-GACA--------ATACAATATCAAA--TTGATTTCCTTGAT---GT-AACGATCTCAAT-AA-AG-ACGTATTTA-TTTCT-TCTGCTTTATATT-GCAA----AC-C-TAT-CGATAA-----A------CATATGTACCT------TAA-TAAAAGCTCTAAC-TATCCC-GAATCCAC---------AAAAATTGC-TAT-TCCC-TTTGAATT-T-AGTCT-A-ATTGC-GC--GT-AAAATAT--GCT-CCAC--AAAT--GAAAAATGCCAGA-TTCAACG---AA---AGTA-AATAATAAAAAA-AAA---AAAACTTA----AGAAAACgaggggaataaatcctttttttttttatttaaaaacctaccagtattttaagtacaatatattgatgacatttttttggcatctgaactggaacagaagaactacaaataatccgcaaatgatatactagtacatccaaacagtcaggctgacctgcgacaatacaatatcaaattgatttccttgatgtaacgatctcaataaagacgtatttatttcttctgctttatattgcaaacctatcgataaacatatgtaccttaataaaagctctaactatcccgaatccacaaaaattgctattccctttgaatttagtctaattgcgcgtaaaatatgctccacaaatgaaaaatgccagattcaacgaaagtaaataataaaaaaaaaaaaacttaagaaaac
gi|4 : gaaaacgaagctataaaatctaacataacaaaagaaaaagaagtaaccatcttgtcttccaggaaagtaaataagcaattacgcttagttgagaaaagggttgaaatttgtaccgacgatgcaaaatatcgattttaatatactcagttgttaacggattaaaaaacatgagaacgtaagatacgtctgtggggatattttttttttcgaataaagaatccgagaaagaatcatcttcaagtaatgatgaaggttacaaatgtgaaaattataaagataattggacaccggaagaaggaagagacaaatggatcatgaaaagattagagtagtcaaagaagacgtaattaagaaaaaggaatttttcttgcaatactttattacgcgcggcaaagaaagggctatgaaagaactagtgaccgaccaaaacatagttattagacctgcagacaaaggatctgggataacgataatggattcggataaatacgtcgatcaagtagaaaatgaaatgcttatagtgcgtcttacagtgaaataaagtacggcaaaagcaaacaaattaccaataaaatgaaataaaaagtaaataatatacatgaaaaaggacccatttcttctgaattaagacattatttcctacccagtgaagtgatagtcagggatactccaaggtaatccaaaactacacaaaaagaacaatccgtttcgaactatataggtaaatggccgacaacatccgacggaaaaatcagcccagtaccggtatgttgagtagcaactctcgagagtgcaaatagagttatgtacaagatactacagatttttaaaagaaacttttaattgtaaagtaaccattaccagattcctctgttctattctgtatatgtggacgtgaaagtactatacctcagtataccagaaaaaaagctcgcgatatcattttttttaaaaaggcagtacaagagcgtcataaataaaaatatattagaaatgatggatgctgttcctgacattaataataaacactacattcagactgaaATTGA-TGCT--GTTCTT-GATAATGAT-A--A------------------------------AT-AAACATTACATTCAGA-CTGAAGGGACCGCTATTGGAT-CAAAACTTG-----------ACGACCGTA--TT-GCAT--GG---GGGTGGGTGGGAGC-AAATCTTCTT--TTTTTTTAAAT---CTG-AAAAGCTA--TC----------------C-GA--TATGT----TGAT-GACA-TTT-T---GGCAT-CTGGATCGGAA-C------------------------------A--AAACCGC-GAA-TAA------AGT--ACATCAGAACAT-TCAGCT-TTC-TC-TACGGCTACAACACATATCTAACA-CCAAAACG
gi|4 : aAAAGCCGGATTTCCTTGAT---AT-AATGATTTTAAT-AACAG-AAGGCTTCCCTTTCT-ACTGACTTTTACT-GCAATAAAACTC-TAA-CGATAA-----AGATACACGTATGTACATGTATCATAA-CAAAAGCTCTATC-CG-TCCAGAATCTAC---------AACAAAC-C-TAC-CCCC-TTTGGACT-T-ATCCT-C-CGTGC-GC--TT-AG---AT--GTT-CTAC--GGAATTTAAAA-TACTAGA-TTCAACG---AA---AGGA-ACT------AAAGAGA---AT--CTT-----AGAAAACATGCT---TATTTAGATAATGACG--AAGAAAAAAACC-CTT-TTA-AA-ATACA------------------CAAATCTCCT-AAA-CTACAGGGAA-AATACG----AAGCGG-TATAACTGTTGT--CTT-TTG-TGGTAA---ATT-GTTC-Tcagatcgaaagtgcgaatagatctcaagattgatagttatattatattgtatgtacattttaaaaaagaaagaaagccggatttccttgatataatgattttaataacagaaggcttccctttctactgacttttactgcaataaaactctaacgataaagatacacgtatgtacatgtatcataacaaaagctctatccgtccagaatctacaacaaacctaccccctttggacttatcctccgtgcgcttagatgttctacggaatttaaaatactagattcaacgaaaggaactaaagagaatcttagaaaacatgcttatttagataatgacgaagaaaaaaacccttttaaaatacacaaatctcctaaactacagggaaaatacgaagcggtataactgttgtcttttgtggtaaattgttct
gi|5 : aattgatgctgttcttgataatgataaataaacattacattcagactgaagggaccgctattggatcaaaacttgacgaccgtattgcatgggggtgggtgggagcaaatcttctttttttttaaatctgaaaagctatccgatatgttgatgacattttggcatctggatcggaacaaaaccgcgaataaagtacatcagaacattcagctttctctacggctacaacacatatctaacaccaaaacgcagatcgaaagtgcgaatagatctcaagattgatagttatattatattgtatgtacattttaaaaaagaaagAA-TCC-AAAAATACACAA--A--GAGAACAATCCGTGCGTTTCGAA-CT-ATA---GTAAATG-CCAACAGCACCCGACGGAAAAATT-AGCCGAGTAC------GTTGAGTCACAACTC--GAGAAAGCAAATA-GTCGCT-TGATAG-TTATGTA-CAAGATACGACATAATTTTTT-AAGAAACTTTCAATT--GTGAAACAACCATTACCAGA-CCCTTGTATTCTT-TTTT-GCA-T----GGATGTGAAAGCTCTTTACCCCAGTATACCTT-GAAAAGAAGCGTGCG-ATGTCATT------AAAAATGCTTTACAAGAACGTCATGAAAAGAAGTAGA-CACGGAAA-GTGTA-TA-GAAATGATGGA-TGAT--GT-CTT-GATAATAATAA--ATTTTAGT----------TTT-----AAT-GAT-AAACACTA-ATTCAGA-CCGAAGGTACCGCTATCGGAT-CGAAACTTGGT--CATAACTACGCTTGTG-TTT-ATAT--GG---G---GGATGGGA---AAATC--C-T--TTTTGAAAAAT---CTG--AAAGCTA--CCAA-ATTTTA-T-GTA-C-GG--TATAT----TGAT-GACA-TTT-T---GGCAT-CTGGA-CGGAA-CAGA--AGAAT-A---TAAA--CAATTTCATA--AAACCGC-GAA---G------AAT--ACATCCGAATAT-
gi|6 : -TCAGCT-TGA-C--TGC-GCCA--------ATCTAATA-CAAAA-CGGATT-CCTTGAT---GT-AACGATG-CAAT-AACAG-ACGGATTCC-TTTCT-ACAGACTTGTATT-G-AA----AC-C-TAC-CGACAA-----A------CAT--GCACCT------TGA-TAAAA-CTCTAAC-CACCCC-GAATCCAC---------AAAAAAAGC-TAT-TCCC-TTTGAA-T-T-GGTCT-G-CGTGC-GC--GT-AGAATAT--GTT-CAAC--AGAA--GAAAACTATCAGA-TTCAACG---AA---A-GA-AAT-------AA-AAA---ATAACTT-----AGAAAA-GCGGG---TA-TTAGATAATGATA--TAG--AAAAGAACCTCATCA-AA-GTAGA--TAAA-CTCG-A-CGATCAAATCTCCTAAAA-CTACA-AAAA-AAGACG----AAGCAG-TATAATCG-TGTTCCCC-TTG-TAGTAA---ACT-ATTC-TAA---GACTTC-C-CATATTCATAAA--TTTAAAA-AA-------TAAC-AAAAAATTTCTGAG
gi|7 : -TGCT--GTCATTCGATAATAAT-ATAATTATAGT----------TTA-----AAT-GATTGAACACTACATTCAG--CC-AAGGTACCG-TA-CGGATGCGAAACTTGGTGCCGTAA-TACGCTTGTGGTTT-TTAT--GGCAGG---GGATGG--AG-AAATC---TT--TTTTGAAAAAT---CTG-AAA-GCGT--TCAGTATTTAC-T-G-A-C-GAAGTATAT-----GATTGACA-TTT-T---TG-ATACTG-ACCGGAAACAGAGAAGAAG-A--TTAAA--CAATTTCATACAAAACCGCCGAA-TGA------AAT--A-ATCCCGATATATCAGAT-TGA-CCATGC-GCCA---------TCTAATA-CAAAAACGGATTC---TGAT---GTTCACGAGCTCAAT-AAAGA-ACGGATCC---TTCT-A--AGCTTGTATTTGCAA----AC-CATACGCGATAA------------CATATGTACCT------TAAATAAAACTTCTAAC-CA-CCC-GAATCCAC---------AAAAaactctgaccgctcaaaatgcttccaa
gi|8 : ACTT-TATT-GGAGC---GC-C-TAC---ATAA-----T------TATAT--------------A-TAAAAGCTCGAAC-CA-CGG-AGATCCATCTCAAAAAAAAAAAAAAC-TAT-TCCCCTTTGGACTAT-GGTCTTA-CGTGC-GT--GTTATAATATTCGTT-CAACTTA-AA--GAAAA-TACCAAA-TTAAA-----AA---AAAACAAC------AAC-AAC---A-AACGTATAGTAGAACAC-CGGTGAATAT---GATAATGAGAAATAGAAAAAGAAA-CTCATCATAATGTAGAACTGAATCTCGGACTGATCTAATCTCCA-AAAGCTAT-GAAAA-AAGACG----AAGCAGATAGAATCG-TGTTCCCCATTG-T--TACGTTACTAATTCTTAAAGAAATTTC-C-AATA-TCATAAA----TAAAA-AA
gi|9 : -ATA---GG---G---GGATCGGAACCAAAAC--ATTATTTTTGAAAAAAAAACTT-AAAAGCTA--C--ATATGTTACT-GTA-CCGA--TACATGTAATGAA-GACG-TTT-TTG-GAAAT-CTGGATCAGAA-CAGA--AGAAC---CTTAAAA-CAATT-----------------------------AT--ACATTC-----------CTATGAACC-TG-----A--------AC--AATAACCAAAACAGAGCTCCT-GAT---GT-AAAAAACTCAATTAACGGCGCGCATTCT-CTTCTCACTGATTAATATT-GCAA----CG-C-TACTCGATAATATATG------CACATGTACCT------T-A-T-AAAGCTCTGAT-TC-CCT-GAA-CCAC---------CAAAGAA---TACATCCC-TTT
Alignments
lowQualScore : 1 1 222222 11 1 1 11 1 1 1 2 77777777777777777777777777777777777777 11 1 2222222 1 333333 1 222 1 11 1 2222 1 111 1 111 2 1 111 444444 1111 1 11 11 2 1 1 11 1 1111 1 11 1 1 111 1 1111111 1 1 2 11111 11 22222 1 1 111 333333 11 1 1 1 1 11 1 222 1 222222 1 111 1 222222 1 1 1 555555555555555555555555555555 111111111 1111111 1111 111 1111 111 333333333333333333333333 1111111111 11111111 1111 333333333333 11111111 1 1111111111 11 1111111 11111 11111 111 1 2222 111 22222 1
lowQualScore : 1 5 5 7 999999 6 7 6 00 3 2 7 33 3 0 0 0 0 1 1 1 0 1 66666666666666666666666666666666666666 33 9 2 9 0 0 9 5555555 0 3 777777 11 0 33 1 3 222 0 11 3 3 0 5555 3 2 8 0 777 0 1 000 8 0 0 3 000 3 777777 7 2222 6 6 7 7 3 88 7 11 7 0 1 7 6 0 0 3 3 44 1 3 6 6666 7 3 7 88 2 2 777 3 6 6 6 8888888 999 0 0 0 3 88888 33 44444 0 0 777 3 99 1 0 8 111111 3 11 0 44 0 0 0 8 0 44 3 33 0 333 0 222222 0 3 3 777 3 0 888888 2 3 3 0 2 0 0 3 0 3 6 99 3 1 6 3 444444444444444444444444444444 6 6 6 0 8 777777777 3 3 88 6 99 2222222 888 2222 77 5 000 5 1 77 1 0 777 0 5 5 66 0000 55 5 5 555 5 0 3 5 0 66 444444444444444444444444 5 6666666666 66 2 2 4 4 4 8 4 66666666 0 8 0 0 777 4 0 4 666 44 4 2 6 4 2222 4 4 8 333333333333 0 66666666 4 4 4 8 2 9999999999 00 4 4 4 5 5 888 5 66 5 0 66 5 0 77 888 7 11 5 66 66 99 5 9999999 4 00000 33333 888 000 5 777 3 0 5 1 5 5 8888 5 5 4 0 1 5 00 5 7777 0 5 1 5 5 5 2 000 5 5 99 6 6 3 66 6 00000 0
lowQualScore : . . . . ...... . . . .. . . . .. . . . . . . . . . . ...................................... .. . . . . . . ....... . . ...... .. . .. . . ... . .. . . . .... . . . . ... . . ... . . . . ... . ...... . .... . . . . . .. . .. . . . . . . . . . .. . . . .... . . . .. . . ... . . . . ....... ... . . . . ..... .. ..... . . ... . .. . . . ...... . .. . .. . . . . . .. . .. . ... . ...... . . . ... . . ...... . . . . . . . . . . . .. . . . . .............................. . . . . . ......... . . .. . .. ....... ... .... .. . ... . . .. . . ... . . . .. .... .. . . ... . . . . . .. ........................ . .......... .. . . . . . . . ........ . . . . ... . . . ... .. . . . . .... . . . ............ . ........ . . . . . .......... .. . . . . . ... . .. . . .. . . .. ... . .. . .. .. .. . ....... . ..... ..... ... ... . ... . . . . . . .... . . . . . . .. . .... . . . . . . . ... . . .. . . . .. . ..... .
lowQualScore : 0 0 5 3 777777 7 3 7 33 3 0 3 88 2 8 0 0 0 0 0 0 2 0 88888888888888888888888888888888888888 88 8 5 2 0 2 8 0000000 0 2 000000 22 0 55 0 2 222 0 22 2 2 0 0000 2 5 8 0 555 0 2 222 8 0 0 2 555 2 777777 3 3333 7 7 3 3 3 33 3 00 3 7 0 3 7 7 7 3 3 00 0 3 7 7777 3 3 7 33 0 0 777 3 7 7 7 0000000 333 0 0 0 2 55555 88 55555 0 0 555 2 00 4 8 0 000000 8 00 8 66 0 0 0 8 0 22 2 88 0 222 0 222222 5 2 2 555 2 0 888888 5 2 2 2 5 0 0 2 0 2 7 22 7 7 7 5 333333333333333333333333333333 7 7 7 8 0 000000000 2 8 88 7 22 3333333 999 3333 99 4 000 7 4 99 4 1 222 1 0 0 99 6666 44 0 0 666 0 2 4 0 4 99 444444444444444444444444 0 6666666666 99 5 9 0 4 4 9 4 11111111 8 9 6 7 888 4 1 4 222 66 4 3 4 0 5555 0 0 0 000000000000 7 88888888 0 1 0 0 0 2222222222 44 4 4 4 7 7 000 0 99 0 1 99 0 3 99 666 9 99 7 99 99 55 0 5555555 4 77777 00000 888 000 0 888 2 2 0 4 0 0 4444 7 7 3 6 4 7 99 7 7777 1 7 4 7 7 7 3 000 7 7 22 7 7 5 88 7 00000 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACTTTACCCCNTGAAGAAAAAGAGTTAGAAAACGAAACTATAGAATCTAACATAC-ATG-ACCAAAAGAAAAGGAGGTAATCATCCTGTC-ATCCAAGAAAGTTAACAAC--TGAGCAATTAAGCTT-GTTG-G-ANAAGGNCTGAAATNTGTACCGACANAGCAAAATATTGATTTTA-----CTCG---ATTG-TT----------------AA-GGA--TTAAAAAACATGGGAACGTAGGA-TGCGTCTGCGGGAATATTTTTT----C--GAA-AAAGAATCCGAGAATGAACCATCCTCAAGNAATGACG-AAGGTNACAAATGTGAAAA-TTT-TAAAGGTAATTGGAC-ACC-G-AAGAAGGAAGAGACAAATGGCTCGATGAATAC-AT---TA-GACAAGTCAAA-GAAGAC-TTA-TTAGAGGGC-GAAAAAGAATTTTTTCTAGAAA-A-T--TATTACGCGCGGCGAAGAAAGGGCTATGAAGGAGCTACTAACCGACCAAAACATAGTAAT-AAGACCTG--CAGACAAGGGATCTGGGATAGCGGTNATGGAT-CGGATAAATACGTCGATCGAG-TGGAAAAG-GAAATGCTTCAANAGCGCTTCTTATAGTGAAATAAA-GTACGACAAAAGC-AA-CAAATTACCAATAAA-TAAAANAAAT--AGTAAATAATATGCACGAAAAAGGATCCATT-T-CGTCTGAATTAAGACATT-ATCTTCCTACCCACCGAAGTGGACA-T-CCGGAAAACTCCAAGGCTAAA-TCC-AAAA-TACACAA--A--GA--ACAATCCGT----TTCGAA-CT-ATA---GTAAATGGCCGACAGCACCCGACGGAAAAATT-AGCCGAGTAC------GTTGAGTCACAACTC--GAGAATGCAAATAAGTCGCT-TGATAG-TTATGTA-CAAGATACGACA-GATTTTTNAAAGAAACTTTCAATT--GTGAAACAACCATTACCAGA-CCCTTGTATTC-T-TTTT-GCA-T----GGACGTGAAAGCTCTTTACCCCAGTATACC-T-GAAAAGAAGCGCGCG-ATGTCATT------AAAAATGCTTTACAAGAACGTCATGAAAAGAAGTAGA-CACGGAAA-GTGTATTA-GAAATGATGGA-TGCT--GTCCTT-GATAATAAT-A--ATTTTAGT----------TTT-----AAT-GAT-AAACACTACATTCAGA-CCGAAGGTACCGCTATCGGAT-CGAAACTTGGT--CGTAACTACGCTTGTG-TTT-ATAT--GG---G---GGATGGGAAN-AAATC--CTT--TTTTGAAAAAT---CTG-AAAAGCTA--CCAGTATTTTA-T-GTA-C-GA--TATAT----TGAT-GACA-TTT-T---GGCAT-CTGGACCGGAA-CAGA--AGAAN-A-CTTAAA--CAATTTCATA--AAACCGC-GAA-TGA------AAT--ACATCCGAATAT-TCAGCT-TGA-CC-TGC-GCCA--------ATCTAATA-CAAAAACGGATTTCCTTGAT---GT-AACGATCTCAAT-AACGG-ACGGATTCC-TTTCT-ACTGACTTGTATT-GCAA----AC-C-TAC-CGATAA-----A------CATATGTACCT------TAA-TAAAAGCTCTAAC-CA-CCC-GAATCCAC---------AAAAAAAGC-TAT-TCCC-TTTGGACT-T-GGTCT-A-CGTGC-GC--GT-AGAATAT--GTT-CAAC--AGAA--GAAAACTACCAGA-TTCAA--CG--AAAG-GA-AAT------AAA-AAA---ATAACTTA----AGAAAACGCGGT---TATTTAGATAATGATA--TAGAAAAAAGAA-CTCATCA-AA-GTAGA--TAAA-CTCG-ACCGATCAAATCTCCT-AAA-CTACAGAAAA-AAGACGA---AAGCAG-TATAATCG-TGTTCCCC-TTG-TAGTAA---ACT-ATTC-TAAAG-GACTTC-C-AATATTCATAAAATTAAAAAA-AAA-----TCGAC-AAAAAATTCTTGAG
Reference ( family-5727 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACTTTACCCCNTGAAGAAAAAGAGTTAGAAAACGAAACTATAGAATCTAACATAC-ATG-ACCAAAAGAAAAGGAGGTAATCATCCTGTC-ATCCAAGAAAGTTAACAAC--TGAGCAATTAAGNTT-GTTG-G-ANAAGGNCTGAAATNTGTACCGACANAGCAAAATATTGATTTTA-----CTCG---ATTG-TT----------------AA-GGA--TTAAAAAACATGGGAACGTAGGA-TGCGTCTGCGGGAATATTTTTT----C--GAA-AAAGAATCCGAGAATGAACCATCCTCAAGNAATGACG-AAGGTNACAAATGTGAAAA-TTT-TAAAGGTAATTGGAC-ACC-G-AAGAAGGAAGAGACAAATGGCTCGATGAATAC-AT---TA-GACAAGTCAAA-GAAGAC-TTA-TTAGAGGGC-GAAAAAGAATTTTTTCTAGAAA-AATA-TATTACGCGCGGCGAAGAAAGGGCTATGAAGGAGCTACTAACCGACCAAAACATAGTAAT-AAGACCTG--CAGACAAGGGATCTGGGATAGCGGTNATGGAT-CGGATAAATACGTCGATCGAG-TGGAAAAG-GAAATGCTTCAANAGCGCTTCTTATAGTGAAATAAA-GTACGACAAAAGC-AA-CAAATTACCAATAAA-TAAAAAAAAT--AGTAAATAATATGCACGAAAAAGGATCCATT-T-CGTCTGAATTAAGACATT-ATCTTCCTACCCACCGAAGTGGACA-T-CCGGAAAACTCCAAGGCTAAA-TCC-AAAA-TACACAA--A--GA--ACAATCCGT----TTCGAA-CT-ATA---GTAAATGGCCGACAGCACCCGACGGAAAAATT-AGCCGAGTAC------GTTGAGTCACAACTC--GAGAATGCAAATAAGTCGCT-TGATAG-TTATGTA-CAAGATACGACA-GATTTTTNAAAGAAACTTTCAATT--GTGAAACAACCATTACCAGA-CCCTTGTATTC-T-TTTT-GCA-T----GGACGTGAAAGCTCTTTACCCCAGTATACC-T-GAAAAGAAGCGCGCG-ATGTCATT------AAAAATGCTTTACAAGAACGTCATGAAAAGAAGTAGA-CACGGAAA-GTGTATTA-GAAATGATGGA-TGCT--GTCCTT-GATAATAAT-A--ATTTTAGT----------TTT-----AAT-GAT-AAACACTACATTCAGA-CCGAAGGTACCGCTATCGGAT-CGAAACTTGGT--CGTAACTACGCTTGTG-TTT-ATAT--GG---G---GGATGGGAAN-AAATC--CTT--TTTTGAAAAAT---CTG-AAAAGCTA--CCAGTATTTTA-T-GTA-C-GA--TATAT----TGAT-GACA-TTT-T---GGCAT-CTGGACCGGAA-CAGA--AGAAN-A-CTTAAA--CAATTTCATA--AAACCGC-GAA-TGA------AAT--ACATCCGAATAT-TCAGCT-TGA-CC-TGC-GCCA--------ATCTAATA-CAAAAACGGATTTCCTTGAT---GT-AACGATCTCAAT-AACGG-ACGGATTCC-TTTCT-ACTGACTTGTATT-GCAA----AC-C-TAC-CGATAA-----A------CATATGTACCT------TAA-TAAAAGCTCTAAC-CA-CCC-GAATCCAC---------AAAAAAAGC-TAT-TCCC-TTTGGACT-T-GGTCT-A-CGTGC-GC--GT-AGAATAT--GTT-CAAC--AGAA--GAAAACTACCAGA-TTCAA--CG--AAAG-GA-AAT------AAA-AAA---ATAACTTA----AGAAAACGCGGT---TATTTAGATAATGATA--TAGAAAAAAGAA-CTCATCA-AA-GTAGA--TAAA-CTCG-ACCGATCAAATCTCCT-AAA-CTACAGAAAA-AAGACGA---AAGCAG-TATAATCG-TGTTCCCC-TTG-TAGTAA---ACT-ATTC-TAAAG-GACTTC-C-AATATTCATAAAATTANAAAA-AAA-----TCGAC-AAAAAATTCTTGAG
gi|1 : AACACTTTACCCCATGAAGAAAAAGAGTTAGAAAACGAAACTATAGAATCTAACATAC-ATGTACCAAAAGAAAAGGAGGTAATCAACCTGTC-ATCAAAGAAA-TTAACAAC--TGAGCAATTAAGGTT-GTTG-GGAAAAGGTCTGAAATTTGTACCGACAAAACAAAATATTGATTTTA-----CTCA---ATTG-TG----------------AA-GGGATTTAAAAAACATGGAAACGGAGGA-TGCGTCTGCGGGAATATTTTTT----C--GAA-AAAGAATCCGAGATTGA------CTCAAGAAATGACG-A--GTAACAAATATAAAAAATTC-TAAAGGTAATTGGAC-ACCCG-AAGAAGGAAGAGACAAATGGCTCGATGAATAC-AT---TA-GACAAGTTAAAAGAAGACGTTA-TTAGAGGGCTGAAAAAGAATTTTTTCTAGAAA------TATTACACGCGGTGAAGAAAGGGCTATGAAGGAGCTACTAACCGACCAAAACATAGTAAT-AAGACCTG--CAGACAAGGGATCTGGGATAGTGGTCATGGATGCGGATAAATACGTTGATCGAG-TGGAAAAG-GAAATGCT-CAAAAGCGCTTCTTATAGTGAAATAAA-ATACGACAAAAGCCAA-CAAATTACCAAATAA-TAAAAAAAATTTAGTAAATAATATGCAC-AAAAAGGATCCATT-T-CGTCTGAATTAAGACATT-ATCTTC-TACCCACCGAAGTGG-CA-T-CCGGAAAACTCCAAG-CTAAA-TCC-AAAA-TACACAA--A--GG--ACAATCCGT----TTCGAAACT-ATA---GTAAATGGCCGACAGCACCCAACGGAAAAATT-AGCCGAGTAC------GTTGAGTCACAACTC--GAGAATGCAAATAAGTCGCT-TGATAG-TTATGTA-CAA-ATACGACA-GAATTTTGAAAGAAACTTTCAATT--GTGAAACAACCATTACCAGA-CCCTTGTATTC-T-TTTTTGCA-T----GGATGTGAAAGCTCTTTACCCCAGTATACC-TAGAAAAGAAGCGCGCG-ATGTCATT------AAAAATGCTTTACAAGAACGTCATGAAAAAAAGTAGA-CACGGAAA-GTGTATTA-GAAATGATGGA-TGCT--GTCCTT-GATAATAAT-A--ATTTTAGT----------TTT-----AAT-GAT-AAACACTACATTCAGA-CCGAAGGTACCGCTATCGGAT-CGAAACTTGGT--CGTAACTA-GCTTGTG-TTT-ATAT--GG---G---GGATGGGAAA-AAATC--CTT--TTTTGAAAAAT---CTG-AAAAGCTA--CCAGTATTTTA-T-GTA-C-GG--TATAT----TGAT-GACA-TTT-T---GGCAT-CTGGACCGGAA-CAGA--AGAAG-AACTTAAA--CAATTTCATA--AAACCGC-GAA-TGA------AAT--ACATCCGAATAT-TCAGCT-TGA-CC-TGC-GCCA--------ATCTAATA-CAAAAACGGATTTCCTTGAT---GT-AACGATCTCAAT-AACAG-ACGGATTCC-TTTCT-ACAGACTTGTATT-GCAA----AC-C-TAC-CGATAA-----A------CATATGTACCT------TAA-TAAAAACTCTAAC-CA-CCC-GAATCC-C---------AAAAAAAGC-TAT-TCCC-TTTGGACT-T-GGTCT-A-CGTGC-GC--GT-AGAATAT--GTT-CAAC--AGAA--GAAAACTATCAGAATTCAA--CG--AAAT-AA-AAT------AAA-AAA---ATAACTTA----AGAAAACGCGGT---TATTTAGATAATGATA--TAGAAAAAAGAA-CTCATCA-AA-GTAGA--TAAA-CTCG-ACCGATCAAATCTCCT-AAA-CTACAGAAAA-AAGACGA---AAGCAG-TATAATCG-TGTTCCCC-TTG-TAGTAA---ACT-ATTC-TAAAG-GACTTC-C-AATATTCATAAAATTTTAAAA-AAA-----TCGACAAAAAAATTCTTGAG
gi|10 : ccaacaaatgtttaattcaaccgataca--TGAGGAATTAAACTT-GTTG-GTACAAGTATTGAAATGTATACCCAAACAGCAAAACATTGAATTTA-----TTCGTGCATGG-TTTTTTTTGGGGGGGGGGGC-GGA--TTTAAAAACATGGAAA-GTTAGA-TGCGTTTGGGGGAATTTTTTTT----C--AAA-AAAGACTACAAAAATGAACTATCTTCAATTAATGGTGAAAGGTTGC--ATG--------TT-TAAAAA-AAT----C-AT----AAGAATGAAGAGACAAATGGCTCGATTAATACGATACATATGGCAAGTCA----TACACTTTA-TCTGAGGAT-TAAGAAG
gi|11 : TATCTTA-T-GTA-C-AA--TAATT----TGAT-GACA-TTTAT---TGCAT-ATAGACCGCCA-CAGA--GGAA----CTTAAA--CAA-----------ACT----AA-TGC------AAT--A---------------GCC-TAA-AC-TGC-AACC--------ATCTAG------GAA--GATTTTATT-ATTTTGT-AACGATCTCAAT-AACAT-ACGGATTCC-TTTAT-ACTGATTTATGTT-GTAT-----C-A-TAC-CGATAA-----A------C--------CT-------------AAGC---AAC-CA-CCCCGAATCCAC----------ATAAAACC-TAT-TCTT-TTT
gi|12 : TCAG--CG--AAAG-AA-AAT------AAA-GAA----TAATTTA----AGGAA---C--------TTGAGATAATGATG--TAGAAGGAA-AA-TTTATAA-AA-GTAGA--TAAA-CTCG-AGCAATCGAATTTCGT-AAA-CTA-ATAAAACAAAACAATCGAAGC---------CG-TGTTCATT-TTG-TGGTAA---ACT-ATTC-TAAAG-CATTTCAC-AATATTCACAAAATTAAAAAA-AAA-----TCt
gi|13 : AATA-TCAAAACAGAGTTCCTTGAT---GT-AAAGATCTCAAT-AGCGG-GCGGATTCC-TTTCT-ACTGATTAATATT-GCAA----AC-C-TAC-CGATAA-----ATATATGCACATGTACCT------TAA-TAAAAGCTCTGAT-TA-CCCTGAATCCAC---------AAAATA--C-TA--TCCC-TTTGGACT-T-GGTGT-A-TATGC--CAAGA-AGAATAT--GTT-
gi|14 : -AAA---ACAACTTA----GGAAAACGCAGT---TATTTACATAATGATA--TAGAAAA-AGAA-CTCATCA-AA-GTAGA--TAAA-CTCG-ACCGATCTAATCTCCTAAAA-CTACAG-AAA-AAGACGA---AA-CAA-TATAATCG-TGTTCCCT-GTG-TAGTAA---ACT-ATTC-TAAAG-GAC
gi|15 : C-C-AATATCCTCAAAATTAAAAAAGAAA-----TCGAC-AAAAAATTCTTGAG
gi|16 : cC-GT--AT-AGAATAT--GTT-CAAC--AGAA--GAAAGCTAGTCGA-GTCAA--CGGAAAAGAGA-AAT------GAA-AAACGGA-AATCTG----AGAAAaactctgaccgccccaaatatgctttccaaaa
gi|17 : ACCCAACGGAAAAATT-AGCCGAGTAC------GTGGAGTCACAACTC--GAGAATGCAAATAAGT
gi|18 : tatatatatatatatatatTTAGATAATGAGA--TAGAAAA-AGAA-CTCATCA-AA-GTAGA--
gi|19 : ATCCGAATAT-TCAGCT-TGA-CC-TGC-GCCA--------ATC
gi|2 : aattgAACACTTTACCCCCT-AAGAAAA-GAGTTAGAAAACGAAACTCTAGAA-CTAACATACCATG-ACCAAAAGAAA-GGAG-TAATCAT--TGCCCATCCAAGAAAATTAACAACAATGAGCAA-TAAG-TT-GTTG-G-ATAAGGTCTGAAAAGTTTACCGACATAACAAAATATTGATTTTA-----CC-----ATTGATT----------------AA-CGA--TT--AAAACATTGGAACG-AGGATTGCTCCTGCGGGAAT-TATTTT----CAAGAA-AAAGAATCCGAG-ATGA------CTCAGAAAATGACG-AAAGTAACAAAT---AAAA-TTTGTAAAGGTAATTGGACAACC-C-AAGAAGGA--AAACAAATGGCTCGAC--ATAC-AT---TA-GTCAAGTTAAA-GAA-AC-TTA-TTAGAGGGC-G--AAAGAATGTTTTCTAGAAA-AATAGTACT-CGCGC-----AGAAA-GGCTAT-ACGGAGC-ACTAACCGACC-AAACATAGTAATGAAGACCTGGCTAG-CA---GATC-GGGATAGTGGTTA-GGAT-CGGATCGAAACGTTGAGCAAGTTGGAAAAGCGAAATGCTTCAACAGCGCTTCTTATAGTGAAATAAACGTACGACAAAA-C-CA-C-AATTACCAATAAA-TAAAACAAAT--AGTAAATAATCT-CACAAAAAAGGATCCATTGTGCGTCTGAATTAAGACATTAATCTTCCTA-CCACCGAATTGGACA-TCCCGGAAAACTCCAAAGCTAAAGTCCGAAAA-TAC-CAAAGA--GA--ACAGATCG------TCGAA-CTGATA---G-AAATGA-CGACAGCAACCCAAGG---AATTAAGCCGAGTACG-----GTTGAGTC-CAACTC--G-GAATGCAAAT-AGTCGCTCTGATAGTTTATGTATCATCATCCGACA-GATTTTTTAACGAAAC-TTCAATTTGGTGAAACAACCATTACCAGACCCCTTGTATTC---TTTT-GCATT----GGA--TAAAAGCTC-TTACCCCAGTCT--C-T-G-AAAGAACCGCGCGAATGTCATT------GAAAAT-CTTAACA--AACGTCATGAAAAGAAGTAGACCACGGAAATGTGTATTGCGAAA-GATGGATTGCTTGGTCC-T-GAAATTAAT-A--ATTTTTTTCTCACATCCATTTACACAAATCGAT-AAACAC-ACATTCATAGCCGAAAGTACTGCTATC--AT-CGAAACTTGGT--CG-AA--ATGC-TGTG-TTTCATATTGGG---A---GGATGGAAAG-A---C--GCT--TTTTG-AAAAT---CTGCAAAAGC-ACTCCAGTATTTTA-TGGTATC-GA--TAGAT----TGA--GACATTTT-T---GCCAT-CTGA--CGGAA-ATGA--AAAGA-A-CTTAAAATC-ATTTCATA--AAACCGC-GAACTGA------ATTTAACATCCGAATAT-TCAGCT-TGA-CCGTGC-GCCA--------A-CTAAGA-CAATAACGGATTTCC-TGAT---GT--ACGAT-TCAA--AAC---ACGGATTCC-TTTCT--CAGACCTTTATT-GCAT----AC-C-TAC---GTAA-----A------CATA--TACT---------A-TAAAA-CTCTAACTCA--CC-GAACCCAC----------AAGAAAGCGTAT-TCCT-TT--GACT-TCGGTCG-ATCGTGCGGC--GT-AAAA-----GTTACGAC--TGAA---AACACT--CAGT-TTAAAACTG--AA---GA-AAT-------CA-AAA---ATAACTTA----AGAAA--GCGGT---TA-TTAGAT-ATGAT---T--GAAAAAGAA-CTCAT-A-AA-GT--A--T--A-CTCG-ACCGATCAA--CTCCA-TAA-C-ACAGAAAA----GCGAG--AAGCAG-C-TTATCG-TGTTCCCC-TTGTTAGTAA---ACT-A-TC-TAAA--GACTCC-CAAATATTCAT-GAATTAAAAAA-AAAAAAATTCGAA-AAAAAAATCTTGAG
gi|3 : cGAAAACGAAGCTATAAAATCTAACATA------AC-AAAAGAAAAAGAAGTAACCATCTTGTC-TTCCAGGAAAGT----AAA--TAAGCAATTACGCTTAGTTGAG-AAAAGGGTTGAAATTTGTACCGACGATGCAAAATATCGATTTTAATATACTCA---GTTG-TT----------------AACGGA--TTAAAAAACATGAGAACGTAAGA-TACGTCTGTGGGGATATTTTTTTTTTC--GAATAAAGAATCCGAGAAAGAATCATCTTCAAGTAATGATG-AAGGTTACAAATGTGAAAA-TTA-TAAAGATAATTGGAC-ACC-GGAAGAAGGAAGAGACAAATGGATC-ATGAAAAG-AT---TA-GAGTAGTCAAA-GAAGAC-GTAATTAA------GAAAAAGGAATTTTTCTTGCAATACTT-TATTACGCGCGGCAAAGAAAGGGCTATGAAAGAACTAGTGACCGACCAAAACATAGTTAT-TAGACCTG--CAGACAAAGGATCTGGGATAACGATAATGGATTCGGATAAATACGTCGATCAAG-TAGAAAAT-GAAATGCTT--ATAGTGCGTCTTACAGTGAAATAAA-GTACGGCAAAAGC-AAACAAATTACCAATAAAATGAAATAAAA--AGTAAATAATATACATGAAAAAGGACCCATT-T-CTTCTGAATTAAGACATT-AT-TTCCTACCCAGTGAAGTG-ATAGT-CAGGGATACTCCAAGGT--AA-TCC-AAAACTACACAA--AAAGA--ACAATCCGT----TTCGAA-CT-ATATAGGTAAATGGCCGACAACATCCGACGGAAAAATC-AGCCCAGTACCGGTATGTTGAGTAGCAACTCTCGAGAGTGCAAATAG-----------AG-TTATGTA-CAAGATACTACA-GATTTTTAAAAGAAACTTTTAATT--GTAAAGTAACCATTACCAGA-TTCCTCTGTTC-TATTCT-GTA-TATGTGGACGTGAAAGTACTATACCTCAGTATACC-A-GAAAAAAAGCTCGCG-ATATCATTTTTTTTAAAAAGGCAGTACAAGAGCGTCATAAA------TA--------AAA-ATATATTA-GAAATGATGGA-TGCT--GTTCCT-GACA----------------------------TT-----AAT-AAT-AAACACTACATTCAGA-CTGAAGGaagcctgacgcccctcaaaaatgctttcccaaa
gi|3 : ---G---GGAGGGGAAT-AAATC--CTT--TTTTTTTTTAT---TTA-AAAACCTA--CCAGTATTTTA-A-GTA-C-AA--TATAT----TGAT-GACA-TTT-TTTTGGCAT-CTGAACTGGAA-CAGA--AGAACTA-C--AAA--TAAT-----------CCGC-AAA-TGATATACTAGT--ACATCCAAACAG-TCAGGC-TGA-CC-TGC-GACA--------ATACAATATCAAA--TTGATTTCCTTGAT---GT-AACGATCTCAAT-AA-AG-ACGTATTTA-TTTCT-TCTGCTTTATATT-GCAA----AC-C-TAT-CGATAA-----A------CATATGTACCT------TAA-TAAAAGCTCTAAC-TATCCC-GAATCCAC---------AAAAATTGC-TAT-TCCC-TTTGAATT-T-AGTCT-A-ATTGC-GC--GT-AAAATAT--GCT-CCAC--AAAT--GAAAAATGCCAGA-TTCAA--CG--AAAG-TA-AATAATAAAAAA-AAA---AAAACTTA----AGAAAACgaggggaataaatcctttttttttttatttaaaaacctaccagtattttaagtacaatatattgatgacatttttttggcatctgaactggaacagaagaactacaaataatccgcaaatgatatactagtacatccaaacagtcaggctgacctgcgacaatacaatatcaaattgatttccttgatgtaacgatctcaataaagacgtatttatttcttctgctttatattgcaaacctatcgataaacatatgtaccttaataaaagctctaactatcccgaatccacaaaaattgctattccctttgaatttagtctaattgcgcgtaaaatatgctccacaaatgaaaaatgccagattcaacgaaagtaaataataaaaaaaaaaaaacttaagaaaac
gi|4 : gaaaacgaagctataaaatctaacataacaaaagaaaaagaagtaaccatcttgtcttccaggaaagtaaataagcaattacgcttagttgagaaaagggttgaaatttgtaccgacgatgcaaaatatcgattttaatatactcagttgttaacggattaaaaaacatgagaacgtaagatacgtctgtggggatattttttttttcgaataaagaatccgagaaagaatcatcttcaagtaatgatgaaggttacaaatgtgaaaattataaagataattggacaccggaagaaggaagagacaaatggatcatgaaaagattagagtagtcaaagaagacgtaattaagaaaaaggaatttttcttgcaatactttattacgcgcggcaaagaaagggctatgaaagaactagtgaccgaccaaaacatagttattagacctgcagacaaaggatctgggataacgataatggattcggataaatacgtcgatcaagtagaaaatgaaatgcttatagtgcgtcttacagtgaaataaagtacggcaaaagcaaacaaattaccaataaaatgaaataaaaagtaaataatatacatgaaaaaggacccatttcttctgaattaagacattatttcctacccagtgaagtgatagtcagggatactccaaggtaatccaaaactacacaaaaagaacaatccgtttcgaactatataggtaaatggccgacaacatccgacggaaaaatcagcccagtaccggtatgttgagtagcaactctcgagagtgcaaatagagttatgtacaagatactacagatttttaaaagaaacttttaattgtaaagtaaccattaccagattcctctgttctattctgtatatgtggacgtgaaagtactatacctcagtataccagaaaaaaagctcgcgatatcattttttttaaaaaggcagtacaagagcgtcataaataaaaatatattagaaatgatggatgctgttcctgacattaataataaacactacattcagactgaaATTGA-TGCT--GTTCTT-GATAATGAT-A--A------------------------------AT-AAACATTACATTCAGA-CTGAAGGGACCGCTATTGGAT-CAAAACTTG-----------ACGACCGTA--TT-GCAT--GG---GGGTGGGTGGGAGC-AAATCTTCTT--TTTTTTTAAAT---CTG-AAAAGCTA--TC----------------C-GA--TATGT----TGAT-GACA-TTT-T---GGCAT-CTGGATCGGAA-C------------------------------A--AAACCGC-GAA-TAA------AGT--ACATCAGAACAT-TCAGCT-TTC-TC-TACGGCTACAACACATATCTAACA-CCAAAACG
gi|4 : aAAAGCCGGATTTCCTTGAT---AT-AATGATTTTAAT-AACAG-AAGGCTTCCCTTTCT-ACTGACTTTTACT-GCAATAAAACTC-TAA-CGATAA-----AGATACACGTATGTACATGTATCATAA-CAAAAGCTCTATC-CG-TCCAGAATCTAC---------AACAAAC-C-TAC-CCCC-TTTGGACT-T-ATCCT-C-CGTGC-GC--TT-AG---AT--GTT-CTAC--GGAATTTAAAA-TACTAGA-TTCAA--CG--AAAG-GA-ACT------AAAGAGA---AT--CTT-----AGAAAACATGCT---TATTTAGATAATGACG--AAGAAAAAAACC-CTT-TTA-AA-ATACA------------------CAAATCTCCT-AAA-CTACAGGGAA-AATACG----AAGCGG-TATAACTGTTGT--CTT-TTG-TGGTAA---ATT-GTTC-Tcagatcgaaagtgcgaatagatctcaagattgatagttatattatattgtatgtacattttaaaaaagaaagaaagccggatttccttgatataatgattttaataacagaaggcttccctttctactgacttttactgcaataaaactctaacgataaagatacacgtatgtacatgtatcataacaaaagctctatccgtccagaatctacaacaaacctaccccctttggacttatcctccgtgcgcttagatgttctacggaatttaaaatactagattcaacgaaaggaactaaagagaatcttagaaaacatgcttatttagataatgacgaagaaaaaaacccttttaaaatacacaaatctcctaaactacagggaaaatacgaagcggtataactgttgtcttttgtggtaaattgttct
gi|5 : aattgatgctgttcttgataatgataaataaacattacattcagactgaagggaccgctattggatcaaaacttgacgaccgtattgcatgggggtgggtgggagcaaatcttctttttttttaaatctgaaaagctatccgatatgttgatgacattttggcatctggatcggaacaaaaccgcgaataaagtacatcagaacattcagctttctctacggctacaacacatatctaacaccaaaacgcagatcgaaagtgcgaatagatctcaagattgatagttatattatattgtatgtacattttaaaaaagaaagAA-TCC-AAAAATACACAA--A--GAGAACAATCCGTGCGTTTCGAA-CT-ATA---GTAAATG-CCAACAGCACCCGACGGAAAAATT-AGCCGAGTAC------GTTGAGTCACAACTC--GAGAAAGCAAATA-GTCGCT-TGATAG-TTATGTA-CAAGATACGACATAATTTTTT-AAGAAACTTTCAATT--GTGAAACAACCATTACCAGA-CCCTTGTATTCTT-TTTT-GCA-T----GGATGTGAAAGCTCTTTACCCCAGTATACCTT-GAAAAGAAGCGTGCG-ATGTCATT------AAAAATGCTTTACAAGAACGTCATGAAAAGAAGTAGA-CACGGAAA-GTGTA-TA-GAAATGATGGA-TGAT--GT-CTT-GATAATAATAA--ATTTTAGT----------TTT-----AAT-GAT-AAACACTA-ATTCAGA-CCGAAGGTACCGCTATCGGAT-CGAAACTTGGT--CATAACTACGCTTGTG-TTT-ATAT--GG---G---GGATGGGA---AAATC--C-T--TTTTGAAAAAT---CTG--AAAGCTA--CCAA-ATTTTA-T-GTA-C-GG--TATAT----TGAT-GACA-TTT-T---GGCAT-CTGGA-CGGAA-CAGA--AGAAT-A---TAAA--CAATTTCATA--AAACCGC-GAA---G------AAT--ACATCCGAATAT-
gi|6 : -TCAGCT-TGA-C--TGC-GCCA--------ATCTAATA-CAAAA-CGGATT-CCTTGAT---GT-AACGATG-CAAT-AACAG-ACGGATTCC-TTTCT-ACAGACTTGTATT-G-AA----AC-C-TAC-CGACAA-----A------CAT--GCACCT------TGA-TAAAA-CTCTAAC-CACCCC-GAATCCAC---------AAAAAAAGC-TAT-TCCC-TTTGAA-T-T-GGTCT-G-CGTGC-GC--GT-AGAATAT--GTT-CAAC--AGAA--GAAAACTATCAGA-TTCAA--CG--AAA--GA-AAT-------AA-AAA---ATAACTT-----AGAAAA-GCGGG---TA-TTAGATAATGATA--TAG--AAAAGAACCTCATCA-AA-GTAGA--TAAA-CTCG-A-CGATCAAATCTCCTAAAA-CTACA-AAAA-AAGACG----AAGCAG-TATAATCG-TGTTCCCC-TTG-TAGTAA---ACT-ATTC-TAA---GACTTC-C-CATATTCATAAATTT---AAA-AAA-----T-AAC-AAAAAATTTCTGAG
gi|7 : -TGCT--GTCATTCGATAATAAT-ATAATTATAGT----------TTA-----AAT-GATTGAACACTACATTCAG--CC-AAGGTACCG-TA-CGGATGCGAAACTTGGTGCCGTAA-TACGCTTGTGGTTT-TTAT--GGCAGG---GGATGG--AG-AAATC---TT--TTTTGAAAAAT---CTG-AAA-GCGT--TCAGTATTTAC-T-G-A-C-GAAGTATAT-----GATTGACA-TTT-T---TG-ATACTG-ACCGGAAACAGAGAAGAAG-A--TTAAA--CAATTTCATACAAAACCGCCGAA-TGA------AAT--A-ATCCCGATATATCAGAT-TGA-CCATGC-GCCA---------TCTAATA-CAAAAACGGATTC---TGAT---GTTCACGAGCTCAAT-AAAGA-ACGGATCC---TTCT-A--AGCTTGTATTTGCAA----AC-CATACGCGATAA------------CATATGTACCT------TAAATAAAACTTCTAAC-CA-CCC-GAATCCAC---------AAAAaactctgaccgctcaaaatgcttccaa
gi|8 : ACTT-TATT-GGAGC---GC-C-TAC---ATAA-----T------TATAT--------------A-TAAAAGCTCGAAC-CA-CGG-AGATCCATCTCAAAAAAAAAAAAAAC-TAT-TCCCCTTTGGACTAT-GGTCTTA-CGTGC-GT--GTTATAATATTCGTT-CAACTTA-AA--GAAAA-TACCAAA-TTAAA------AAAA-AACAAC------AAC-AAC---A-AACGTATAGTAGAACAC-CGGTGAATAT---GATAATGAGAAATAGAAAAAGAAA-CTCATCATAATGTAGAACTGAATCTCGGACTGATCTAATCTCCA-AAAGCTAT-GAAAA-AAGACG----AAGCAGATAGAATCG-TGTTCCCCATTG-T--TACGTTACTAATTCTTAAAGAAATTTC-C-AATA-TCATAAA--TAAAAAA-
gi|9 : -ATA---GG---G---GGATCGGAACCAAAAC--ATTATTTTTGAAAAAAAAACTT-AAAAGCTA--C--ATATGTTACT-GTA-CCGA--TACATGTAATGAA-GACG-TTT-TTG-GAAAT-CTGGATCAGAA-CAGA--AGAAC---CTTAAAA-CAATT-----------------------------AT--ACATTC-----------CTATGAACC-TG-----A--------AC--AATAACCAAAACAGAGCTCCT-GAT---GT-AAAAAACTCAATTAACGGCGCGCATTCT-CTTCTCACTGATTAATATT-GCAA----CG-C-TACTCGATAATATATG------CACATGTACCT------T-A-T-AAAGCTCTGAT-TC-CCT-GAA-CCAC---------CAAAGAA---TACATCCC-TTT
Alignments
lowQualScore : 1 1 222222 11 1 1 11 1 1 2 77777777777777777777777777777777777777 11 1 2222222 1 333333 111 11111111 11 1 2222 1 111 1 111 2 1 111 44444 1 1 11 11 2 1 1 11 1 1111 1 11 1 1 111 1 1111111 1 1 2 11111 11 22222 1 1 111 333333 11 1 1 1 1 11 1 222 1 222222 1 111 1 222222 1 1 1 555555555555555555555555555555 111111111 1111111 1111 111 1111 111 333333333333333333333333 1111111111 11111111 1111 333333333333 11111111 1 1111111111 11 1111111 11111 11111 111 1 2222 111 222222 1
lowQualScore : 1 5 5 7 999999 6 7 6 00 3 2 7 33 3 8 0 0 0 1 1 1 0 1 66666666666666666666666666666666666666 33 9 2 9 0 0 9 5555555 0 3 777777 11 333 1 3 44444444 11 3 3 0 5555 3 2 8 0 777 0 1 000 8 0 0 3 000 3 66666 3 6 2 6 6 7 7 3 88 7 11 7 0 1 7 6 0 0 3 3 44 1 3 6 6666 7 3 1 88 2 2 777 3 6 6 6 8888888 999 0 0 0 3 88888 33 44444 0 0 777 3 99 1 0 8 111111 3 11 0 44 0 0 0 8 0 44 3 33 0 333 0 222222 0 3 3 777 3 0 888888 2 3 3 0 2 0 0 3 0 3 6 99 3 1 6 3 444444444444444444444444444444 6 6 6 0 8 777777777 3 3 88 6 99 2222222 888 2222 77 5 000 5 1 77 1 0 777 0 5 5 66 0000 55 5 5 555 5 0 3 5 0 66 444444444444444444444444 5 6666666666 66 2 2 4 4 4 8 4 66666666 0 8 0 0 777 4 0 4 666 44 4 2 6 4 2222 4 4 8 333333333333 0 66666666 4 4 4 8 2 9999999999 00 4 4 4 5 5 888 5 66 5 0 66 5 0 77 888 7 11 5 66 66 99 5 9999999 4 00000 33333 888 000 5 777 3 0 5 1 5 5 8888 5 5 4 0 1 5 00 5 7777 0 5 1 5 5 5 2 000 5 5 99 6 6 3 6 000000 0
lowQualScore : . . . . ...... . . . .. . . . .. . . . . . . . . . . ...................................... .. . . . . . . ....... . . ...... .. ... . . ........ .. . . . .... . . . . ... . . ... . . . . ... . ..... . . . . . . . . .. . .. . . . . . . . . . .. . . . .... . . . .. . . ... . . . . ....... ... . . . . ..... .. ..... . . ... . .. . . . ...... . .. . .. . . . . . .. . .. . ... . ...... . . . ... . . ...... . . . . . . . . . . . .. . . . . .............................. . . . . . ......... . . .. . .. ....... ... .... .. . ... . . .. . . ... . . . .. .... .. . . ... . . . . . .. ........................ . .......... .. . . . . . . . ........ . . . . ... . . . ... .. . . . . .... . . . ............ . ........ . . . . . .......... .. . . . . . ... . .. . . .. . . .. ... . .. . .. .. .. . ....... . ..... ..... ... ... . ... . . . . . . .... . . . . . . .. . .... . . . . . . . ... . . .. . . . . ...... .
lowQualScore : 0 0 5 3 777777 7 3 7 33 3 0 3 88 2 8 0 0 0 0 0 0 2 0 88888888888888888888888888888888888888 88 8 5 2 0 2 8 0000000 0 2 000000 22 555 0 2 22222222 22 2 2 0 0000 2 5 8 0 555 0 2 222 8 0 0 2 555 2 77777 7 7 0 7 7 3 3 3 33 3 00 3 7 0 3 7 7 7 3 3 00 0 3 7 7777 3 3 0 33 0 0 777 3 7 7 7 0000000 333 0 0 0 2 55555 88 55555 0 0 555 2 00 4 8 0 000000 8 00 8 66 0 0 0 8 0 22 2 88 0 222 0 222222 5 2 2 555 2 0 888888 5 2 2 2 5 0 0 2 0 2 7 22 7 7 7 5 333333333333333333333333333333 7 7 7 8 0 000000000 2 8 88 7 22 3333333 999 3333 99 4 000 7 4 99 4 1 222 1 0 0 99 6666 44 0 0 666 0 2 4 0 4 99 444444444444444444444444 0 6666666666 99 5 9 0 4 4 9 4 11111111 8 9 6 7 888 4 1 4 222 66 4 3 4 0 5555 0 0 0 000000000000 7 88888888 0 1 0 0 0 2222222222 44 4 4 4 7 7 000 0 99 0 1 99 0 3 99 666 9 99 7 99 99 55 0 5555555 4 77777 00000 888 000 0 888 2 2 0 4 0 0 4444 7 7 3 6 4 7 99 7 7777 1 7 4 7 7 7 3 000 7 7 22 7 7 5 7 888888 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACTTTACCCCNTGAAGAAAAAGAGTTAGAAAACGAAACTATAGAATCTAACATAC-ATG-ACCAAAAGAAAAGGAGGTAATCATCCTGTC-ATCCAAGAAAGTTAACAAC--TGAGCAATTAAGCTT-GTTG-G-ANAAGGNCTGAAATNTGTACCGACANAGCAAAATATTGATTTTA-----CTCG---ATTG-TT----------------AA-GGA--TTAAAAAACATGGGAACGTAGGA-TGCGTCTGCGGGAATATTTTTT----C--GAA-AAAGAATCCGAGAATGAACCATCCTCAAGNAATGACGAA-GGTNACAAATGTGAAAA-TTT-TAAAGGTAATTGGAC-ACC-G-AAGAAGGAAGAGACAAATGGCTCGATGAATAC-AT---TA-GACAAGTCAAA-GAAGAC-TTA-TTAGAGGGC-GAAAAAGAATTTTTTCTAGAAA-A---TATTACGCGCGGCGAAGAAAGGGCTATGAAGGAGCTACTAACCGACCAAAACATAGTAAT-AAGACCTG--CAGACAAGGGATCTGGGATAGCGGTNATGGAT-CGGATAAATACGTCGATCGAG-TGGAAAAG-GAAATGCTTCAANAGCGCTTCTTATAGTGAAATAAA-GTACGACAAAAGC-AA-CAAATTACCAATAAA-TAAAANAAAT--AGTAAATAATATGCACGAAAAAGGATCCATT-T-CGTCTGAATTAAGACATT-ATCTTCCTACCCACCGAAGTGGACA-T-CCGGAAAACTCCAAGGCTAAA-TCC-AAAA-TACACAA--A--GA--ACAATCCGT----TTCGAA-CT-ATA---GTAAATGGCCGACAGCACCCGACGGAAAAATT-AGCCGAGTAC------GTTGAGTCACAACTC--GAGAATGCAAATAAGTCGCT-TGATAG-TTATGTA-CAAGATACGACA-GATTTTTNAAAGAAACTTTCAATT--GTGAAACAACCATTACCAGA-CCCTTGTATTC-T-TTTT-GCA-T----GGACGTGAAAGCTCTTTACCCCAGTATACC-T-GAAAAGAAGCGCGCG-ATGTCATT------AAAAATGCTTTACAAGAACGTCATGAAAAGAAGTAGA-CACGGAAA-GTGTATTA-GAAATGATGGA-TGCT--GTCCTT-GATAATAAT-A--ATTTTAGT----------TTT-----AAT-GAT-AAACACTACATTCAGA-CCGAAGGTACCGCTATCGGAT-CGAAACTTGGT--CGTAACTACGCTTGTG-TTT-ATAT--GG---G---GGATGGGAAN-AAATC--CTT--TTTTGAAAAAT---CTG-AAAAGCTA--CCAGTATTTTA-T-GTA-C-GA--TATAT----TGAT-GACA-TTT-T---GGCAT-CTGGACCGGAA-CAGA--AGAAN-A-CTTAAA--CAATTTCATA--AAACCGC-GAA-TGA------AAT--ACATCCGAATAT-TCAGCT-TGA-CC-TGC-GCCA--------ATCTAATA-CAAAAACGGATTTCCTTGAT---GT-AACGATCTCAAT-AACGG-ACGGATTCC-TTTCT-ACTGACTTGTATT-GCAA----AC-C-TAC-CGATAA-----A------CATATGTACCT------TAA-TAAAAGCTCTAAC-CA-CCC-GAATCCAC---------AAAAAAAGC-TAT-TCCC-TTTGGACT-T-GGTCT-A-CGTGC-GC--GT-AGAATAT--GTT-CAAC--AGAA--GAAAACTACCAGA-TTCAA--CG--AAAG-GA-AAT------AAA-AAA---ATAACTTA----AGAAAACGCGGT---TATTTAGATAATGATA--TAGAAAAAAGAA-CTCATCA-AA-GTAGA--TAAA-CTCG-ACCGATCAAATCTCCT-AAA-CTACAGAAAA-AAGACGA---AAGCAG-TATAATCG-TGTTCCCC-TTG-TAGTAA---ACT-ATTC-TAAAG-GACTTC-C-AATATTCATAAAATTAAAAAA-AAA-----TCGAC-AAAAAATTCTTGAG
Reference ( family-5727 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACTTTACCCCNTGAAGAAAAAGAGTTAGAAAACGAAACTATAGAATCTAACATAC-ATG-ACCAAAAGAAAAGGAGGTAATCATCCTGTC-ATCCAAGAAAGTTAACAAC--TGAGCAATTAAGCTT-GTTG-G-ANAAGGNCTGAAATNTGTACCGACANAGCAAAATATTGATTTTA-----CTCG---ATTG-TT----------------AA-GGA--TTAAAAAACATGGGAACGTAGGA-TGCGTCTGCGGGAATATTTTTT----C--GAA-AAAGAATCCGAGAATGAACCATCCTCAAGNAATGACGAA-GGTNACAAATGTGAAAA-TTT-TAAAGGTAATTGGAC-ACC-G-AAGAAGGAAGAGACAAATGGCTCGATGAATAC-AT---TA-GACAAGTCAAA-GAAGAC-TTA-TTAGAGGGC-GAAAAAGAATTTTTTCTAGAAA-A--TTATTACGCGCGGCGAAGAAAGGGCTATGAAGGAGCTACTAACCGACCAAAACATAGTAAT-AAGACCTG--CAGACAAGGGATCTGGGATAGCGGTNATGGAT-CGGATAAATACGTCGATCGAG-TGGAAAAG-GAAATGCTTCAANAGCGCTTCTTATAGTGAAATAAA-GTACGACAAAAGC-AA-CAAATTACCAATAAA-TAAAANAAAT--AGTAAATAATATGCACGAAAAAGGATCCATT-T-CGTCTGAATTAAGACATT-ATCTTCCTACCCACCGAAGTGGACA-T-CCGGAAAACTCCAAGGCTAAA-TCC-AAAA-TACACAA--A--GA--ACAATCCGT----TTCGAA-CT-ATA---GTAAATGGCCGACAGCACCCGACGGAAAAATT-AGCCGAGTAC------GTTGAGTCACAACTC--GAGAATGCAAATAAGTCGCT-TGATAG-TTATGTA-CAAGATACGACA-GATTTTTNAAAGAAACTTTCAATT--GTGAAACAACCATTACCAGA-CCCTTGTATTC-T-TTTT-GCA-T----GGACGTGAAAGCTCTTTACCCCAGTATACC-T-GAAAAGAAGCGCGCG-ATGTCATT------AAAAATGCTTTACAAGAACGTCATGAAAAGAAGTAGA-CACGGAAA-GTGTATTA-GAAATGATGGA-TGCT--GTCCTT-GATAATAAT-A--ATTTTAGT----------TTT-----AAT-GAT-AAACACTACATTCAGA-CCGAAGGTACCGCTATCGGAT-CGAAACTTGGT--CGTAACTACGCTTGTG-TTT-ATAT--GG---G---GGATGGGAAN-AAATC--CTT--TTTTGAAAAAT---CTG-AAAAGCTA--CCAGTATTTTA-T-GTA-C-GA--TATAT----TGAT-GACA-TTT-T---GGCAT-CTGGACCGGAA-CAGA--AGAAN-A-CTTAAA--CAATTTCATA--AAACCGC-GAA-TGA------AAT--ACATCCGAATAT-TCAGCT-TGA-CC-TGC-GCCA--------ATCTAATA-CAAAAACGGATTTCCTTGAT---GT-AACGATCTCAAT-AACGG-ACGGATTCC-TTTCT-ACTGACTTGTATT-GCAA----AC-C-TAC-CGATAA-----A------CATATGTACCT------TAA-TAAAAGCTCTAAC-CA-CCC-GAATCCAC---------AAAAAAAGC-TAT-TCCC-TTTGGACT-T-GGTCT-A-CGTGC-GC--GT-AGAATAT--GTT-CAAC--AGAA--GAAAACTACCAGA-TTCAA--CG--AAAG-GA-AAT------AAA-AAA---ATAACTTA----AGAAAACGCGGT---TATTTAGATAATGATA--TAGAAAAAAGAA-CTCATCA-AA-GTAGA--TAAA-CTCG-ACCGATCAAATCTCCT-AAA-CTACAGAAAA-AAGACGA---AAGCAG-TATAATCG-TGTTCCCC-TTG-TAGTAA---ACT-ATTC-TAAAG-GACTTC-C-AATATTCATAAAATTAAAAAA-AAA-----TCGAC-AAAAAATTCTTGAG
gi|1 : AACACTTTACCCCATGAAGAAAAAGAGTTAGAAAACGAAACTATAGAATCTAACATAC-ATGTACCAAAAGAAAAGGAGGTAATCAACCTGTC-ATCAAAGAAA-TTAACAAC--TGAGCAATTAAGGTT-GTTG-GGAAAAGGTCTGAAATTTGTACCGACAAAACAAAATATTGATTTTA-----CTCA---ATTG-TG----------------AA-GGGATTTAAAAAACATGGAAACGGAGGA-TGCGTCTGCGGGAATATTTTTT----C--GAA-AAAGAATCCGAGATTGA------CTCAAGAAATGACGA---GTAACAAATATAAAAAATTC-TAAAGGTAATTGGAC-ACCCG-AAGAAGGAAGAGACAAATGGCTCGATGAATAC-AT---TA-GACAAGTTAAAAGAAGACGTTA-TTAGAGGGCTGAAAAAGAATTTTTTCTAGAAA-----TATTACACGCGGTGAAGAAAGGGCTATGAAGGAGCTACTAACCGACCAAAACATAGTAAT-AAGACCTG--CAGACAAGGGATCTGGGATAGTGGTCATGGATGCGGATAAATACGTTGATCGAG-TGGAAAAG-GAAATGCT-CAAAAGCGCTTCTTATAGTGAAATAAA-ATACGACAAAAGCCAA-CAAATTACCAAATAA-TAAAAAAAATTTAGTAAATAATATGCAC-AAAAAGGATCCATT-T-CGTCTGAATTAAGACATT-ATCTTC-TACCCACCGAAGTGG-CA-T-CCGGAAAACTCCAAG-CTAAA-TCC-AAAA-TACACAA--A--GG--ACAATCCGT----TTCGAAACT-ATA---GTAAATGGCCGACAGCACCCAACGGAAAAATT-AGCCGAGTAC------GTTGAGTCACAACTC--GAGAATGCAAATAAGTCGCT-TGATAG-TTATGTA-CAA-ATACGACA-GAATTTTGAAAGAAACTTTCAATT--GTGAAACAACCATTACCAGA-CCCTTGTATTC-T-TTTTTGCA-T----GGATGTGAAAGCTCTTTACCCCAGTATACC-TAGAAAAGAAGCGCGCG-ATGTCATT------AAAAATGCTTTACAAGAACGTCATGAAAAAAAGTAGA-CACGGAAA-GTGTATTA-GAAATGATGGA-TGCT--GTCCTT-GATAATAAT-A--ATTTTAGT----------TTT-----AAT-GAT-AAACACTACATTCAGA-CCGAAGGTACCGCTATCGGAT-CGAAACTTGGT--CGTAACTA-GCTTGTG-TTT-ATAT--GG---G---GGATGGGAAA-AAATC--CTT--TTTTGAAAAAT---CTG-AAAAGCTA--CCAGTATTTTA-T-GTA-C-GG--TATAT----TGAT-GACA-TTT-T---GGCAT-CTGGACCGGAA-CAGA--AGAAG-AACTTAAA--CAATTTCATA--AAACCGC-GAA-TGA------AAT--ACATCCGAATAT-TCAGCT-TGA-CC-TGC-GCCA--------ATCTAATA-CAAAAACGGATTTCCTTGAT---GT-AACGATCTCAAT-AACAG-ACGGATTCC-TTTCT-ACAGACTTGTATT-GCAA----AC-C-TAC-CGATAA-----A------CATATGTACCT------TAA-TAAAAACTCTAAC-CA-CCC-GAATCC-C---------AAAAAAAGC-TAT-TCCC-TTTGGACT-T-GGTCT-A-CGTGC-GC--GT-AGAATAT--GTT-CAAC--AGAA--GAAAACTATCAGAATTCAA--CG--AAAT-AA-AAT------AAA-AAA---ATAACTTA----AGAAAACGCGGT---TATTTAGATAATGATA--TAGAAAAAAGAA-CTCATCA-AA-GTAGA--TAAA-CTCG-ACCGATCAAATCTCCT-AAA-CTACAGAAAA-AAGACGA---AAGCAG-TATAATCG-TGTTCCCC-TTG-TAGTAA---ACT-ATTC-TAAAG-GACTTC-C-AATATTCATAAAATTTTAAAA-AAA-----TCGACAAAAAAATTCTTGAG
gi|10 : ccaacaaatgtttaattcaaccgataca--TGAGGAATTAAACTT-GTTG-GTACAAGTATTGAAATGTATACCCAAACAGCAAAACATTGAATTTA-----TTCGTGCATGG-TTTTTTTTGGGGGGGGGGGC-GGA--TTTAAAAACATGGAAA-GTTAGA-TGCGTTTGGGGGAATTTTTTTT----C--AAA-AAAGACTACAAAAATGAACTATCTTCAATTAATGGTGAAAGGTTGCA----TG------TT-TAAAAA-AAT----C-AT----AAGAATGAAGAGACAAATGGCTCGATTAATACGATACATATGGCAAGTCA----TACACTTTA-TCTGAGGAT-TAAGAAG
gi|11 : TATCTTA-T-GTA-C-AA--TAATT----TGAT-GACA-TTTAT---TGCAT-ATAGACCGCCA-CAGA--GGAA----CTTAAA--CAA-----------ACT----AA-TGC------AAT--A---------------GCC-TAA-AC-TGC-AACC--------ATCTAG------GAA--GATTTTATT-ATTTTGT-AACGATCTCAAT-AACAT-ACGGATTCC-TTTAT-ACTGATTTATGTT-GTAT-----C-A-TAC-CGATAA-----A------C--------CT-------------AAGC---AAC-CA-CCCCGAATCCAC----------ATAAAACC-TAT-TCTT-TTT
gi|12 : TCAG--CG--AAAG-AA-AAT------AAA-GAA----TAATTTA----AGGAA---C--------TTGAGATAATGATG--TAGAAGGAA-AA-TTTATAA-AA-GTAGA--TAAA-CTCG-AGCAATCGAATTTCGT-AAA-CTA-ATAAAACAAAACAATCGAAGC---------CG-TGTTCATT-TTG-TGGTAA---ACT-ATTC-TAAAG-CATTTCAC-AATATTCACAAAATTAAAAAA-AAA-----TCt
gi|13 : AATA-TCAAAACAGAGTTCCTTGAT---GT-AAAGATCTCAAT-AGCGG-GCGGATTCC-TTTCT-ACTGATTAATATT-GCAA----AC-C-TAC-CGATAA-----ATATATGCACATGTACCT------TAA-TAAAAGCTCTGAT-TA-CCCTGAATCCAC---------AAAATA--C-TA--TCCC-TTTGGACT-T-GGTGT-A-TATGC--CAAGA-AGAATAT--GTT-
gi|14 : -AAA---ACAACTTA----GGAAAACGCAGT---TATTTACATAATGATA--TAGAAAA-AGAA-CTCATCA-AA-GTAGA--TAAA-CTCG-ACCGATCTAATCTCCTAAAA-CTACAG-AAA-AAGACGA---AA-CAA-TATAATCG-TGTTCCCT-GTG-TAGTAA---ACT-ATTC-TAAAG-GAC
gi|15 : C-C-AATATCCTCAAAATTAAAAAAGAAA-----TCGAC-AAAAAATTCTTGAG
gi|16 : cC-GT--AT-AGAATAT--GTT-CAAC--AGAA--GAAAGCTAGTCGA-GTCAA--CGGAAAAGAGA-AAT------GAA-AAACGGA-AATCTG----AGAAAaactctgaccgccccaaatatgctttccaaaa
gi|17 : ACCCAACGGAAAAATT-AGCCGAGTAC------GTGGAGTCACAACTC--GAGAATGCAAATAAGT
gi|18 : tatatatatatatatatatTTAGATAATGAGA--TAGAAAA-AGAA-CTCATCA-AA-GTAGA--
gi|19 : ATCCGAATAT-TCAGCT-TGA-CC-TGC-GCCA--------ATC
gi|2 : aattgAACACTTTACCCCCT-AAGAAAA-GAGTTAGAAAACGAAACTCTAGAA-CTAACATACCATG-ACCAAAAGAAA-GGAG-TAATCAT--TGCCCATCCAAGAAAATTAACAACAATGAGCAA-TAAG-TT-GTTG-G-ATAAGGTCTGAAAAGTTTACCGACATAACAAAATATTGATTTTA-----CC-----ATTGATT----------------AA-CGA--TT--AAAACATTGGAACG-AGGATTGCTCCTGCGGGAAT-TATTTT----CAAGAA-AAAGAATCCGAG-ATGA------CTCAGAAAATGACGAA-AGTAACAAAT---AAAA-TTTGTAAAGGTAATTGGACAACC-C-AAGAAGGA--AAACAAATGGCTCGAC--ATAC-AT---TA-GTCAAGTTAAA-GAA-AC-TTA-TTAGAGGGC-G--AAAGAATGTTTTCTAGAAA-A--ATAGTACTCGC-GC--AGAAA-GGCTAT-ACGGAGC-ACTAACCGACC-AAACATAGTAATGAAGACCTGGCTAG-CA---GATC-GGGATAGTGGTTA-GGAT-CGGATCGAAACGTTGAGCAAGTTGGAAAAGCGAAATGCTTCAACAGCGCTTCTTATAGTGAAATAAACGTACGACAAAA-C-CA-C-AATTACCAATAAA-TAAAACAAAT--AGTAAATAATCT-CACAAAAAAGGATCCATTGTGCGTCTGAATTAAGACATTAATCTTCCTA-CCACCGAATTGGACA-TCCCGGAAAACTCCAAAGCTAAAGTCCGAAAA-TAC-CAAAGA--GA--ACAGATCG------TCGAA-CTGATA---G-AAATGA-CGACAGCAACCCAAGG---AATTAAGCCGAGTACG-----GTTGAGTC-CAACTC--G-GAATGCAAAT-AGTCGCTCTGATAGTTTATGTATCATCATCCGACA-GATTTTTTAACGAAAC-TTCAATTTGGTGAAACAACCATTACCAGACCCCTTGTATTC---TTTT-GCATT----GGA--TAAAAGCTC-TTACCCCAGTCT--C-T-G-AAAGAACCGCGCGAATGTCATT------GAAAAT-CTTAACA--AACGTCATGAAAAGAAGTAGACCACGGAAATGTGTATTGCGAAA-GATGGATTGCTTGGTCC-T-GAAATTAAT-A--ATTTTTTTCTCACATCCATTTACACAAATCGAT-AAACAC-ACATTCATAGCCGAAAGTACTGCTATC--AT-CGAAACTTGGT--CG-AA--ATGC-TGTG-TTTCATATTGGG---A---GGATGGAAAG-A---C--GCT--TTTTG-AAAAT---CTGCAAAAGC-ACTCCAGTATTTTA-TGGTATC-GA--TAGAT----TGA--GACATTTT-T---GCCAT-CTGA--CGGAA-ATGA--AAAGA-A-CTTAAAATC-ATTTCATA--AAACCGC-GAACTGA------ATTTAACATCCGAATAT-TCAGCT-TGA-CCGTGC-GCCA--------A-CTAAGA-CAATAACGGATTTCC-TGAT---GT--ACGAT-TCAA--AAC---ACGGATTCC-TTTCT--CAGACCTTTATT-GCAT----AC-C-TAC---GTAA-----A------CATA--TACT---------A-TAAAA-CTCTAACTCA--CC-GAACCCAC----------AAGAAAGCGTAT-TCCT-TT--GACT-TCGGTCG-ATCGTGCGGC--GT-AAAA-----GTTACGAC--TGAA---AACACT--CAGT-TTAAAACTG--AA---GA-AAT-------CA-AAA---ATAACTTA----AGAAA--GCGGT---TA-TTAGAT-ATGAT---T--GAAAAAGAA-CTCAT-A-AA-GT--A--T--A-CTCG-ACCGATCAA--CTCCA-TAA-C-ACAGAAAA----GCGAG--AAGCAG-C-TTATCG-TGTTCCCC-TTGTTAGTAA---ACT-A-TC-TAAA--GACTCC-CAAATATTCAT-GAATTAAAAAA-AAAAAAATTCGAA-AAAAAAATCTTGAG
gi|3 : cGAAAACGAAGCTATAAAATCTAACATA------AC-AAAAGAAAAAGAAGTAACCATCTTGTC-TTCCAGGAAAGT----AAA--TAAGCAATTACGCTTAGTTGAG-AAAAGGGTTGAAATTTGTACCGACGATGCAAAATATCGATTTTAATATACTCA---GTTG-TT----------------AACGGA--TTAAAAAACATGAGAACGTAAGA-TACGTCTGTGGGGATATTTTTTTTTTC--GAATAAAGAATCCGAGAAAGAATCATCTTCAAGTAATGATGAA-GGTTACAAATGTGAAAA-TTA-TAAAGATAATTGGAC-ACC-GGAAGAAGGAAGAGACAAATGGATC-ATGAAAAG-AT---TA-GAGTAGTCAAA-GAAGAC-GTAATTAA------GAAAAAGGAATTTTTCTTGCAATACTTTATTACGCGCGGCAAAGAAAGGGCTATGAAAGAACTAGTGACCGACCAAAACATAGTTAT-TAGACCTG--CAGACAAAGGATCTGGGATAACGATAATGGATTCGGATAAATACGTCGATCAAG-TAGAAAAT-GAAATGCTT--ATAGTGCGTCTTACAGTGAAATAAA-GTACGGCAAAAGC-AAACAAATTACCAATAAAATGAAATAAAA--AGTAAATAATATACATGAAAAAGGACCCATT-T-CTTCTGAATTAAGACATT-AT-TTCCTACCCAGTGAAGTG-ATAGT-CAGGGATACTCCAAGGT--AA-TCC-AAAACTACACAA--AAAGA--ACAATCCGT----TTCGAA-CT-ATATAGGTAAATGGCCGACAACATCCGACGGAAAAATC-AGCCCAGTACCGGTATGTTGAGTAGCAACTCTCGAGAGTGCAAATAG-----------AG-TTATGTA-CAAGATACTACA-GATTTTTAAAAGAAACTTTTAATT--GTAAAGTAACCATTACCAGA-TTCCTCTGTTC-TATTCT-GTA-TATGTGGACGTGAAAGTACTATACCTCAGTATACC-A-GAAAAAAAGCTCGCG-ATATCATTTTTTTTAAAAAGGCAGTACAAGAGCGTCATAAA------TA--------AAA-ATATATTA-GAAATGATGGA-TGCT--GTTCCT-GACA----------------------------TT-----AAT-AAT-AAACACTACATTCAGA-CTGAAGGaagcctgacgcccctcaaaaatgctttcccaaa
gi|3 : ---G---GGAGGGGAAT-AAATC--CTT--TTTTTTTTTAT---TTA-AAAACCTA--CCAGTATTTTA-A-GTA-C-AA--TATAT----TGAT-GACA-TTT-TTTTGGCAT-CTGAACTGGAA-CAGA--AGAACTA-C--AAA--TAAT-----------CCGC-AAA-TGATATACTAGT--ACATCCAAACAG-TCAGGC-TGA-CC-TGC-GACA--------ATACAATATCAAA--TTGATTTCCTTGAT---GT-AACGATCTCAAT-AA-AG-ACGTATTTA-TTTCT-TCTGCTTTATATT-GCAA----AC-C-TAT-CGATAA-----A------CATATGTACCT------TAA-TAAAAGCTCTAAC-TATCCC-GAATCCAC---------AAAAATTGC-TAT-TCCC-TTTGAATT-T-AGTCT-A-ATTGC-GC--GT-AAAATAT--GCT-CCAC--AAAT--GAAAAATGCCAGA-TTCAA--CG--AAAG-TA-AATAATAAAAAA-AAA---AAAACTTA----AGAAAACgaggggaataaatcctttttttttttatttaaaaacctaccagtattttaagtacaatatattgatgacatttttttggcatctgaactggaacagaagaactacaaataatccgcaaatgatatactagtacatccaaacagtcaggctgacctgcgacaatacaatatcaaattgatttccttgatgtaacgatctcaataaagacgtatttatttcttctgctttatattgcaaacctatcgataaacatatgtaccttaataaaagctctaactatcccgaatccacaaaaattgctattccctttgaatttagtctaattgcgcgtaaaatatgctccacaaatgaaaaatgccagattcaacgaaagtaaataataaaaaaaaaaaaacttaagaaaac
gi|4 : gaaaacgaagctataaaatctaacataacaaaagaaaaagaagtaaccatcttgtcttccaggaaagtaaataagcaattacgcttagttgagaaaagggttgaaatttgtaccgacgatgcaaaatatcgattttaatatactcagttgttaacggattaaaaaacatgagaacgtaagatacgtctgtggggatattttttttttcgaataaagaatccgagaaagaatcatcttcaagtaatgatgaaggttacaaatgtgaaaattataaagataattggacaccggaagaaggaagagacaaatggatcatgaaaagattagagtagtcaaagaagacgtaattaagaaaaaggaatttttcttgcaatactttattacgcgcggcaaagaaagggctatgaaagaactagtgaccgaccaaaacatagttattagacctgcagacaaaggatctgggataacgataatggattcggataaatacgtcgatcaagtagaaaatgaaatgcttatagtgcgtcttacagtgaaataaagtacggcaaaagcaaacaaattaccaataaaatgaaataaaaagtaaataatatacatgaaaaaggacccatttcttctgaattaagacattatttcctacccagtgaagtgatagtcagggatactccaaggtaatccaaaactacacaaaaagaacaatccgtttcgaactatataggtaaatggccgacaacatccgacggaaaaatcagcccagtaccggtatgttgagtagcaactctcgagagtgcaaatagagttatgtacaagatactacagatttttaaaagaaacttttaattgtaaagtaaccattaccagattcctctgttctattctgtatatgtggacgtgaaagtactatacctcagtataccagaaaaaaagctcgcgatatcattttttttaaaaaggcagtacaagagcgtcataaataaaaatatattagaaatgatggatgctgttcctgacattaataataaacactacattcagactgaaATTGA-TGCT--GTTCTT-GATAATGAT-A--A------------------------------AT-AAACATTACATTCAGA-CTGAAGGGACCGCTATTGGAT-CAAAACTTG-----------ACGACCGTA--TT-GCAT--GG---GGGTGGGTGGGAGC-AAATCTTCTT--TTTTTTTAAAT---CTG-AAAAGCTA--TC----------------C-GA--TATGT----TGAT-GACA-TTT-T---GGCAT-CTGGATCGGAA-C------------------------------A--AAACCGC-GAA-TAA------AGT--ACATCAGAACAT-TCAGCT-TTC-TC-TACGGCTACAACACATATCTAACA-CCAAAACG
gi|4 : aAAAGCCGGATTTCCTTGAT---AT-AATGATTTTAAT-AACAG-AAGGCTTCCCTTTCT-ACTGACTTTTACT-GCAATAAAACTC-TAA-CGATAA-----AGATACACGTATGTACATGTATCATAA-CAAAAGCTCTATC-CG-TCCAGAATCTAC---------AACAAAC-C-TAC-CCCC-TTTGGACT-T-ATCCT-C-CGTGC-GC--TT-AG---AT--GTT-CTAC--GGAATTTAAAA-TACTAGA-TTCAA--CG--AAAG-GA-ACT------AAAGAGA---AT--CTT-----AGAAAACATGCT---TATTTAGATAATGACG--AAGAAAAAAACC-CTT-TTA-AA-ATACA------------------CAAATCTCCT-AAA-CTACAGGGAA-AATACG----AAGCGG-TATAACTGTTGT--CTT-TTG-TGGTAA---ATT-GTTC-Tcagatcgaaagtgcgaatagatctcaagattgatagttatattatattgtatgtacattttaaaaaagaaagaaagccggatttccttgatataatgattttaataacagaaggcttccctttctactgacttttactgcaataaaactctaacgataaagatacacgtatgtacatgtatcataacaaaagctctatccgtccagaatctacaacaaacctaccccctttggacttatcctccgtgcgcttagatgttctacggaatttaaaatactagattcaacgaaaggaactaaagagaatcttagaaaacatgcttatttagataatgacgaagaaaaaaacccttttaaaatacacaaatctcctaaactacagggaaaatacgaagcggtataactgttgtcttttgtggtaaattgttct
gi|5 : aattgatgctgttcttgataatgataaataaacattacattcagactgaagggaccgctattggatcaaaacttgacgaccgtattgcatgggggtgggtgggagcaaatcttctttttttttaaatctgaaaagctatccgatatgttgatgacattttggcatctggatcggaacaaaaccgcgaataaagtacatcagaacattcagctttctctacggctacaacacatatctaacaccaaaacgcagatcgaaagtgcgaatagatctcaagattgatagttatattatattgtatgtacattttaaaaaagaaagAA-TCC-AAAAATACACAA--A--GAGAACAATCCGTGCGTTTCGAA-CT-ATA---GTAAATG-CCAACAGCACCCGACGGAAAAATT-AGCCGAGTAC------GTTGAGTCACAACTC--GAGAAAGCAAATA-GTCGCT-TGATAG-TTATGTA-CAAGATACGACATAATTTTTT-AAGAAACTTTCAATT--GTGAAACAACCATTACCAGA-CCCTTGTATTCTT-TTTT-GCA-T----GGATGTGAAAGCTCTTTACCCCAGTATACCTT-GAAAAGAAGCGTGCG-ATGTCATT------AAAAATGCTTTACAAGAACGTCATGAAAAGAAGTAGA-CACGGAAA-GTGTA-TA-GAAATGATGGA-TGAT--GT-CTT-GATAATAATAA--ATTTTAGT----------TTT-----AAT-GAT-AAACACTA-ATTCAGA-CCGAAGGTACCGCTATCGGAT-CGAAACTTGGT--CATAACTACGCTTGTG-TTT-ATAT--GG---G---GGATGGGA---AAATC--C-T--TTTTGAAAAAT---CTG--AAAGCTA--CCAA-ATTTTA-T-GTA-C-GG--TATAT----TGAT-GACA-TTT-T---GGCAT-CTGGA-CGGAA-CAGA--AGAAT-A---TAAA--CAATTTCATA--AAACCGC-GAA---G------AAT--ACATCCGAATAT-
gi|6 : -TCAGCT-TGA-C--TGC-GCCA--------ATCTAATA-CAAAA-CGGATT-CCTTGAT---GT-AACGATG-CAAT-AACAG-ACGGATTCC-TTTCT-ACAGACTTGTATT-G-AA----AC-C-TAC-CGACAA-----A------CAT--GCACCT------TGA-TAAAA-CTCTAAC-CACCCC-GAATCCAC---------AAAAAAAGC-TAT-TCCC-TTTGAA-T-T-GGTCT-G-CGTGC-GC--GT-AGAATAT--GTT-CAAC--AGAA--GAAAACTATCAGA-TTCAA--CG--AAA--GA-AAT-------AA-AAA---ATAACTT-----AGAAAA-GCGGG---TA-TTAGATAATGATA--TAG--AAAAGAACCTCATCA-AA-GTAGA--TAAA-CTCG-A-CGATCAAATCTCCTAAAA-CTACA-AAAA-AAGACG----AAGCAG-TATAATCG-TGTTCCCC-TTG-TAGTAA---ACT-ATTC-TAA---GACTTC-C-CATATTCATAAATTTAAAAAA-TA---------AC-AAAAAATTTCTGAG
gi|7 : -TGCT--GTCATTCGATAATAAT-ATAATTATAGT----------TTA-----AAT-GATTGAACACTACATTCAG--CC-AAGGTACCG-TA-CGGATGCGAAACTTGGTGCCGTAA-TACGCTTGTGGTTT-TTAT--GGCAGG---GGATGG--AG-AAATC---TT--TTTTGAAAAAT---CTG-AAA-GCGT--TCAGTATTTAC-T-G-A-C-GAAGTATAT-----GATTGACA-TTT-T---TG-ATACTG-ACCGGAAACAGAGAAGAAG-A--TTAAA--CAATTTCATACAAAACCGCCGAA-TGA------AAT--A-ATCCCGATATATCAGAT-TGA-CCATGC-GCCA---------TCTAATA-CAAAAACGGATTC---TGAT---GTTCACGAGCTCAAT-AAAGA-ACGGATCC---TTCT-A--AGCTTGTATTTGCAA----AC-CATACGCGATAA------------CATATGTACCT------TAAATAAAACTTCTAAC-CA-CCC-GAATCCAC---------AAAAaactctgaccgctcaaaatgcttccaa
gi|8 : ACTT-TATT-GGAGC---GC-C-TAC---ATAA-----T------TATAT--------------A-TAAAAGCTCGAAC-CA-CGG-AGATCCATCTCAAAAAAAAAAAAAAC-TAT-TCCCCTTTGGACTAT-GGTCTTA-CGTGC-GT--GTTATAATATTCGTT-CAACTTA-AA--GAAAA-TACCAAA-TTAAA------AAAA-AACAAC------AAC-AAC---A-AACGTATAGTAGAACAC-CGGTGAATAT---GATAATGAGAAATAGAAAAAGAAA-CTCATCATAATGTAGAACTGAATCTCGGACTGATCTAATCTCCA-AAAGCTAT-GAAAA-AAGACG----AAGCAGATAGAATCG-TGTTCCCCATTG-T--TACGTTACTAATTCTTAAAGAAATTTC-C-AATA-TCATAAA--TAAAAAA-
gi|9 : -ATA---GG---G---GGATCGGAACCAAAAC--ATTATTTTTGAAAAAAAAACTT-AAAAGCTA--C--ATATGTTACT-GTA-CCGA--TACATGTAATGAA-GACG-TTT-TTG-GAAAT-CTGGATCAGAA-CAGA--AGAAC---CTTAAAA-CAATT-----------------------------AT--ACATTC-----------CTATGAACC-TG-----A--------AC--AATAACCAAAACAGAGCTCCT-GAT---GT-AAAAAACTCAATTAACGGCGCGCATTCT-CTTCTCACTGATTAATATT-GCAA----CG-C-TACTCGATAATATATG------CACATGTACCT------T-A-T-AAAGCTCTGAT-TC-CCT-GAA-CCAC---------CAAAGAA---TACATCCC-TTT
Alignments
lowQualScore : 1 1 222222 11 1 1 11 1 1 2 77777777777777777777777777777777777777 11 1 2222222 1 333333 111 11111111 11 1 2222 1 111 1 111 2 1 111 1 44444 1 1 11 11 2 1 1 11 1 1111 1 11 1 1 111 1 1111111 1 1 2 11111 11 22222 1 1 111 333333 11 1 1 1 1 11 1 222 1 222222 1 111 1 222222 1 1 1 555555555555555555555555555555 111111111 1111111 1111 111 1111 111 333333333333333333333333 1111111111 11111111 1111 333333333333 11111111 1 1111111111 11 1111111 11111 11111 111 1 2222 111 222222 1
lowQualScore : 1 5 5 7 999999 6 7 6 00 3 2 7 33 3 8 0 0 0 1 1 1 0 1 66666666666666666666666666666666666666 33 9 2 9 0 0 9 5555555 0 3 777777 11 333 1 3 44444444 11 3 3 0 5555 3 2 8 0 777 0 1 000 8 0 0 3 000 3 3 44444 3 6 2 6 6 7 7 3 88 7 11 7 0 1 7 6 0 0 3 3 44 1 3 6 6666 7 3 1 88 2 2 777 3 6 6 6 8888888 999 0 0 0 3 88888 33 44444 0 0 777 3 99 1 0 8 111111 3 11 0 44 0 0 0 8 0 44 3 33 0 333 0 222222 0 3 3 777 3 0 888888 2 3 3 0 2 0 0 3 0 3 6 99 3 1 6 3 444444444444444444444444444444 6 6 6 0 8 777777777 3 3 88 6 99 2222222 888 2222 77 5 000 5 1 77 1 0 777 0 5 5 66 0000 55 5 5 555 5 0 3 5 0 66 444444444444444444444444 5 6666666666 66 2 2 4 4 4 8 4 66666666 0 8 0 0 777 4 0 4 666 44 4 2 6 4 2222 4 4 8 333333333333 0 66666666 4 4 4 8 2 9999999999 00 4 4 4 5 5 888 5 66 5 0 66 5 0 77 888 7 11 5 66 66 99 5 9999999 4 00000 33333 888 000 5 777 3 0 5 1 5 5 8888 5 5 4 0 1 5 00 5 7777 0 5 1 5 5 5 2 000 5 5 99 6 6 3 6 000000 0
lowQualScore : . . . . ...... . . . .. . . . .. . . . . . . . . . . ...................................... .. . . . . . . ....... . . ...... .. ... . . ........ .. . . . .... . . . . ... . . ... . . . . ... . . ..... . . . . . . . . .. . .. . . . . . . . . . .. . . . .... . . . .. . . ... . . . . ....... ... . . . . ..... .. ..... . . ... . .. . . . ...... . .. . .. . . . . . .. . .. . ... . ...... . . . ... . . ...... . . . . . . . . . . . .. . . . . .............................. . . . . . ......... . . .. . .. ....... ... .... .. . ... . . .. . . ... . . . .. .... .. . . ... . . . . . .. ........................ . .......... .. . . . . . . . ........ . . . . ... . . . ... .. . . . . .... . . . ............ . ........ . . . . . .......... .. . . . . . ... . .. . . .. . . .. ... . .. . .. .. .. . ....... . ..... ..... ... ... . ... . . . . . . .... . . . . . . .. . .... . . . . . . . ... . . .. . . . . ...... .
lowQualScore : 0 0 5 3 777777 7 3 7 33 3 0 3 88 2 8 0 0 0 0 0 0 2 0 88888888888888888888888888888888888888 88 8 5 2 0 2 8 0000000 0 2 000000 22 555 0 2 22222222 22 2 2 0 0000 2 5 8 0 555 0 2 222 8 0 0 2 555 2 3 00000 7 7 0 7 7 3 3 3 33 3 00 3 7 0 3 7 7 7 3 3 00 0 3 7 7777 3 3 0 33 0 0 777 3 7 7 7 0000000 333 0 0 0 2 55555 88 55555 0 0 555 2 00 4 8 0 000000 8 00 8 66 0 0 0 8 0 22 2 88 0 222 0 222222 5 2 2 555 2 0 888888 5 2 2 2 5 0 0 2 0 2 7 22 7 7 7 5 333333333333333333333333333333 7 7 7 8 0 000000000 2 8 88 7 22 3333333 999 3333 99 4 000 7 4 99 4 1 222 1 0 0 99 6666 44 0 0 666 0 2 4 0 4 99 444444444444444444444444 0 6666666666 99 5 9 0 4 4 9 4 11111111 8 9 6 7 888 4 1 4 222 66 4 3 4 0 5555 0 0 0 000000000000 7 88888888 0 1 0 0 0 2222222222 44 4 4 4 7 7 000 0 99 0 1 99 0 3 99 666 9 99 7 99 99 55 0 5555555 4 77777 00000 888 000 0 888 2 2 0 4 0 0 4444 7 7 3 6 4 7 99 7 7777 1 7 4 7 7 7 3 000 7 7 22 7 7 5 7 888888 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACTTTACCCCNTGAAGAAAAAGAGTTAGAAAACGAAACTATAGAATCTAACATAC-ATG-ACCAAAAGAAAAGGAGGTAATCATCCTGTC-ATCCAAGAAAGTTAACAAC--TGAGCAATTAAGCTT-GTTG-G-ANAAGGNCTGAAATNTGTACCGACANAGCAAAATATTGATTTTA-----CTCG---ATTG-TT----------------AA-GGA--TTAAAAAACATGGGAACGTAGGA-TGCGTCTGCGGGAATATTTTTT----C--GAA-AAAGAATCCGAGAATGAACCATCCTCAAGNAATGACGAA-GGTNACAAATGTGAAAA-TTT-TAAAGGTAATTGGAC-ACC-G-AAGAAGGAAGAGACAAATGGCTCGATGAATAC-AT---TA-GACAAGTCAAA-GAAGAC-TTA-TTAGAGGGC-GAAAAAGAATTTTTTCTAG-AAA-A---TATTACGCGCGGCGAAGAAAGGGCTATGAAGGAGCTACTAACCGACCAAAACATAGTAAT-AAGACCTG--CAGACAAGGGATCTGGGATAGCGGTNATGGAT-CGGATAAATACGTCGATCGAG-TGGAAAAG-GAAATGCTTCAANAGCGCTTCTTATAGTGAAATAAA-GTACGACAAAAGC-AA-CAAATTACCAATAAA-TAAAANAAAT--AGTAAATAATATGCACGAAAAAGGATCCATT-T-CGTCTGAATTAAGACATT-ATCTTCCTACCCACCGAAGTGGACA-T-CCGGAAAACTCCAAGGCTAAA-TCC-AAAA-TACACAA--A--GA--ACAATCCGT----TTCGAA-CT-ATA---GTAAATGGCCGACAGCACCCGACGGAAAAATT-AGCCGAGTAC------GTTGAGTCACAACTC--GAGAATGCAAATAAGTCGCT-TGATAG-TTATGTA-CAAGATACGACA-GATTTTTNAAAGAAACTTTCAATT--GTGAAACAACCATTACCAGA-CCCTTGTATTC-T-TTTT-GCA-T----GGACGTGAAAGCTCTTTACCCCAGTATACC-T-GAAAAGAAGCGCGCG-ATGTCATT------AAAAATGCTTTACAAGAACGTCATGAAAAGAAGTAGA-CACGGAAA-GTGTATTA-GAAATGATGGA-TGCT--GTCCTT-GATAATAAT-A--ATTTTAGT----------TTT-----AAT-GAT-AAACACTACATTCAGA-CCGAAGGTACCGCTATCGGAT-CGAAACTTGGT--CGTAACTACGCTTGTG-TTT-ATAT--GG---G---GGATGGGAAN-AAATC--CTT--TTTTGAAAAAT---CTG-AAAAGCTA--CCAGTATTTTA-T-GTA-C-GA--TATAT----TGAT-GACA-TTT-T---GGCAT-CTGGACCGGAA-CAGA--AGAAN-A-CTTAAA--CAATTTCATA--AAACCGC-GAA-TGA------AAT--ACATCCGAATAT-TCAGCT-TGA-CC-TGC-GCCA--------ATCTAATA-CAAAAACGGATTTCCTTGAT---GT-AACGATCTCAAT-AACGG-ACGGATTCC-TTTCT-ACTGACTTGTATT-GCAA----AC-C-TAC-CGATAA-----A------CATATGTACCT------TAA-TAAAAGCTCTAAC-CA-CCC-GAATCCAC---------AAAAAAAGC-TAT-TCCC-TTTGGACT-T-GGTCT-A-CGTGC-GC--GT-AGAATAT--GTT-CAAC--AGAA--GAAAACTACCAGA-TTCAA--CG--AAAG-GA-AAT------AAA-AAA---ATAACTTA----AGAAAACGCGGT---TATTTAGATAATGATA--TAGAAAAAAGAA-CTCATCA-AA-GTAGA--TAAA-CTCG-ACCGATCAAATCTCCT-AAA-CTACAGAAAA-AAGACGA---AAGCAG-TATAATCG-TGTTCCCC-TTG-TAGTAA---ACT-ATTC-TAAAG-GACTTC-C-AATATTCATAAAATTAAAAAA-AAA-----TCGAC-AAAAAATTCTTGAG
Reference ( family-5727 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACTTTACCCCNTGAAGAAAAAGAGTTAGAAAACGAAACTATAGAATCTAACATAC-ATG-ACCAAAAGAAAAGGAGGTAATCATCCTGTC-ATCCAAGAAAGTTAACAAC--TGAGCAATTAAGCTT-GTTG-G-ANAAGGNCTGAAATNTGTACCGACANAGCAAAATATTGATTTTA-----CTCG---ATTG-TT----------------AA-GGA--TTAAAAAACATGGGAACGTAGGA-TGCGTCTGCGGGAATATTTTTT----C--GAA-AAAGAATCCGAGAATGAACCATCCTCAAGNAATGACGAA-GGTNACAAATGTGAAAA-TTT-TAAAGGTAATTGGAC-ACC-G-AAGAAGGAAGAGACAAATGGCTCGATGAATAC-AT---TA-GACAAGTCAAA-GAAGAC-TTA-TTAGAGGGC-GAAAAAGAATTTTTTCTAG-AAA-A---TATTACGCGCGGCGAAGAAAGGGCTATGAAGGAGCTACTAACCGACCAAAACATAGTAAT-AAGACCTG--CAGACAAGGGATCTGGGATAGCGGTNATGGAT-CGGATAAATACGTCGATCGAG-TGGAAAAG-GAAATGCTTCAANAGCGCTTCTTATAGTGAAATAAA-GTACGACAAAAGC-AA-CAAATTACCAATAAA-TAAAANAAAT--AGTAAATAATATGCACGAAAAAGGATCCATT-T-CGTCTGAATTAAGACATT-ATCTTCCTACCCACCGAAGTGGACA-T-CCGGAAAACTCCAAGGCTAAA-TCC-AAAA-TACACAA--A--GA--ACAATCCGT----TTCGAA-CT-ATA---GTAAATGGCCGACAGCACCCGACGGAAAAATT-AGCCGAGTAC------GTTGAGTCACAACTC--GAGAATGCAAATAAGTCGCT-TGATAG-TTATGTA-CAAGATACGACA-GATTTTTNAAAGAAACTTTCAATT--GTGAAACAACCATTACCAGA-CCCTTGTATTC-T-TTTT-GCA-T----GGACGTGAAAGCTCTTTACCCCAGTATACC-T-GAAAAGAAGCGCGCG-ATGTCATT------AAAAATGCTTTACAAGAACGTCATGAAAAGAAGTAGA-CACGGAAA-GTGTATTA-GAAATGATGGA-TGCT--GTCCTT-GATAATAAT-A--ATTTTAGT----------TTT-----AAT-GAT-AAACACTACATTCAGA-CCGAAGGTACCGCTATCGGAT-CGAAACTTGGT--CGTAACTACGCTTGTG-TTT-ATAT--GG---G---GGATGGGAAN-AAATC--CTT--TTTTGAAAAAT---CTG-AAAAGCTA--CCAGTATTTTA-T-GTA-C-GA--TATAT----TGAT-GACA-TTT-T---GGCAT-CTGGACCGGAA-CAGA--AGAAN-A-CTTAAA--CAATTTCATA--AAACCGC-GAA-TGA------AAT--ACATCCGAATAT-TCAGCT-TGA-CC-TGC-GCCA--------ATCTAATA-CAAAAACGGATTTCCTTGAT---GT-AACGATCTCAAT-AACGG-ACGGATTCC-TTTCT-ACTGACTTGTATT-GCAA----AC-C-TAC-CGATAA-----A------CATATGTACCT------TAA-TAAAAGCTCTAAC-CA-CCC-GAATCCAC---------AAAAAAAGC-TAT-TCCC-TTTGGACT-T-GGTCT-A-CGTGC-GC--GT-AGAATAT--GTT-CAAC--AGAA--GAAAACTACCAGA-TTCAA--CG--AAAG-GA-AAT------AAA-AAA---ATAACTTA----AGAAAACGCGGT---TATTTAGATAATGATA--TAGAAAAAAGAA-CTCATCA-AA-GTAGA--TAAA-CTCG-ACCGATCAAATCTCCT-AAA-CTACAGAAAA-AAGACGA---AAGCAG-TATAATCG-TGTTCCCC-TTG-TAGTAA---ACT-ATTC-TAAAG-GACTTC-C-AATATTCATAAAATTAAAAAA-AAA-----TCGAC-AAAAAATTCTTGAG
gi|1 : AACACTTTACCCCATGAAGAAAAAGAGTTAGAAAACGAAACTATAGAATCTAACATAC-ATGTACCAAAAGAAAAGGAGGTAATCAACCTGTC-ATCAAAGAAA-TTAACAAC--TGAGCAATTAAGGTT-GTTG-GGAAAAGGTCTGAAATTTGTACCGACAAAACAAAATATTGATTTTA-----CTCA---ATTG-TG----------------AA-GGGATTTAAAAAACATGGAAACGGAGGA-TGCGTCTGCGGGAATATTTTTT----C--GAA-AAAGAATCCGAGATTGA------CTCAAGAAATGACGA---GTAACAAATATAAAAAATTC-TAAAGGTAATTGGAC-ACCCG-AAGAAGGAAGAGACAAATGGCTCGATGAATAC-AT---TA-GACAAGTTAAAAGAAGACGTTA-TTAGAGGGCTGAAAAAGAATTTTTTCTAG-AAA-----TATTACACGCGGTGAAGAAAGGGCTATGAAGGAGCTACTAACCGACCAAAACATAGTAAT-AAGACCTG--CAGACAAGGGATCTGGGATAGTGGTCATGGATGCGGATAAATACGTTGATCGAG-TGGAAAAG-GAAATGCT-CAAAAGCGCTTCTTATAGTGAAATAAA-ATACGACAAAAGCCAA-CAAATTACCAAATAA-TAAAAAAAATTTAGTAAATAATATGCAC-AAAAAGGATCCATT-T-CGTCTGAATTAAGACATT-ATCTTC-TACCCACCGAAGTGG-CA-T-CCGGAAAACTCCAAG-CTAAA-TCC-AAAA-TACACAA--A--GG--ACAATCCGT----TTCGAAACT-ATA---GTAAATGGCCGACAGCACCCAACGGAAAAATT-AGCCGAGTAC------GTTGAGTCACAACTC--GAGAATGCAAATAAGTCGCT-TGATAG-TTATGTA-CAA-ATACGACA-GAATTTTGAAAGAAACTTTCAATT--GTGAAACAACCATTACCAGA-CCCTTGTATTC-T-TTTTTGCA-T----GGATGTGAAAGCTCTTTACCCCAGTATACC-TAGAAAAGAAGCGCGCG-ATGTCATT------AAAAATGCTTTACAAGAACGTCATGAAAAAAAGTAGA-CACGGAAA-GTGTATTA-GAAATGATGGA-TGCT--GTCCTT-GATAATAAT-A--ATTTTAGT----------TTT-----AAT-GAT-AAACACTACATTCAGA-CCGAAGGTACCGCTATCGGAT-CGAAACTTGGT--CGTAACTA-GCTTGTG-TTT-ATAT--GG---G---GGATGGGAAA-AAATC--CTT--TTTTGAAAAAT---CTG-AAAAGCTA--CCAGTATTTTA-T-GTA-C-GG--TATAT----TGAT-GACA-TTT-T---GGCAT-CTGGACCGGAA-CAGA--AGAAG-AACTTAAA--CAATTTCATA--AAACCGC-GAA-TGA------AAT--ACATCCGAATAT-TCAGCT-TGA-CC-TGC-GCCA--------ATCTAATA-CAAAAACGGATTTCCTTGAT---GT-AACGATCTCAAT-AACAG-ACGGATTCC-TTTCT-ACAGACTTGTATT-GCAA----AC-C-TAC-CGATAA-----A------CATATGTACCT------TAA-TAAAAACTCTAAC-CA-CCC-GAATCC-C---------AAAAAAAGC-TAT-TCCC-TTTGGACT-T-GGTCT-A-CGTGC-GC--GT-AGAATAT--GTT-CAAC--AGAA--GAAAACTATCAGAATTCAA--CG--AAAT-AA-AAT------AAA-AAA---ATAACTTA----AGAAAACGCGGT---TATTTAGATAATGATA--TAGAAAAAAGAA-CTCATCA-AA-GTAGA--TAAA-CTCG-ACCGATCAAATCTCCT-AAA-CTACAGAAAA-AAGACGA---AAGCAG-TATAATCG-TGTTCCCC-TTG-TAGTAA---ACT-ATTC-TAAAG-GACTTC-C-AATATTCATAAAATTTTAAAA-AAA-----TCGACAAAAAAATTCTTGAG
gi|10 : ccaacaaatgtttaattcaaccgataca--TGAGGAATTAAACTT-GTTG-GTACAAGTATTGAAATGTATACCCAAACAGCAAAACATTGAATTTA-----TTCGTGCATGG-TTTTTTTTGGGGGGGGGGGC-GGA--TTTAAAAACATGGAAA-GTTAGA-TGCGTTTGGGGGAATTTTTTTT----C--AAA-AAAGACTACAAAAATGAACTATCTTCAATTAATGGTGAAAGGTTGCA----TG------TT-TAAAAA-AAT----C-AT----AAGAATGAAGAGACAAATGGCTCGATTAATACGATACATATGGCAAGTCA----TACACTTTA-TCTGAGGAT-TAAGAAG
gi|11 : TATCTTA-T-GTA-C-AA--TAATT----TGAT-GACA-TTTAT---TGCAT-ATAGACCGCCA-CAGA--GGAA----CTTAAA--CAA-----------ACT----AA-TGC------AAT--A---------------GCC-TAA-AC-TGC-AACC--------ATCTAG------GAA--GATTTTATT-ATTTTGT-AACGATCTCAAT-AACAT-ACGGATTCC-TTTAT-ACTGATTTATGTT-GTAT-----C-A-TAC-CGATAA-----A------C--------CT-------------AAGC---AAC-CA-CCCCGAATCCAC----------ATAAAACC-TAT-TCTT-TTT
gi|12 : TCAG--CG--AAAG-AA-AAT------AAA-GAA----TAATTTA----AGGAA---C--------TTGAGATAATGATG--TAGAAGGAA-AA-TTTATAA-AA-GTAGA--TAAA-CTCG-AGCAATCGAATTTCGT-AAA-CTA-ATAAAACAAAACAATCGAAGC---------CG-TGTTCATT-TTG-TGGTAA---ACT-ATTC-TAAAG-CATTTCAC-AATATTCACAAAATTAAAAAA-AAA-----TCt
gi|13 : AATA-TCAAAACAGAGTTCCTTGAT---GT-AAAGATCTCAAT-AGCGG-GCGGATTCC-TTTCT-ACTGATTAATATT-GCAA----AC-C-TAC-CGATAA-----ATATATGCACATGTACCT------TAA-TAAAAGCTCTGAT-TA-CCCTGAATCCAC---------AAAATA--C-TA--TCCC-TTTGGACT-T-GGTGT-A-TATGC--CAAGA-AGAATAT--GTT-
gi|14 : -AAA---ACAACTTA----GGAAAACGCAGT---TATTTACATAATGATA--TAGAAAA-AGAA-CTCATCA-AA-GTAGA--TAAA-CTCG-ACCGATCTAATCTCCTAAAA-CTACAG-AAA-AAGACGA---AA-CAA-TATAATCG-TGTTCCCT-GTG-TAGTAA---ACT-ATTC-TAAAG-GAC
gi|15 : C-C-AATATCCTCAAAATTAAAAAAGAAA-----TCGAC-AAAAAATTCTTGAG
gi|16 : cC-GT--AT-AGAATAT--GTT-CAAC--AGAA--GAAAGCTAGTCGA-GTCAA--CGGAAAAGAGA-AAT------GAA-AAACGGA-AATCTG----AGAAAaactctgaccgccccaaatatgctttccaaaa
gi|17 : ACCCAACGGAAAAATT-AGCCGAGTAC------GTGGAGTCACAACTC--GAGAATGCAAATAAGT
gi|18 : tatatatatatatatatatTTAGATAATGAGA--TAGAAAA-AGAA-CTCATCA-AA-GTAGA--
gi|19 : ATCCGAATAT-TCAGCT-TGA-CC-TGC-GCCA--------ATC
gi|2 : aattgAACACTTTACCCCCT-AAGAAAA-GAGTTAGAAAACGAAACTCTAGAA-CTAACATACCATG-ACCAAAAGAAA-GGAG-TAATCAT--TGCCCATCCAAGAAAATTAACAACAATGAGCAA-TAAG-TT-GTTG-G-ATAAGGTCTGAAAAGTTTACCGACATAACAAAATATTGATTTTA-----CC-----ATTGATT----------------AA-CGA--TT--AAAACATTGGAACG-AGGATTGCTCCTGCGGGAAT-TATTTT----CAAGAA-AAAGAATCCGAG-ATGA------CTCAGAAAATGACGAA-AGTAACAAAT---AAAA-TTTGTAAAGGTAATTGGACAACC-C-AAGAAGGA--AAACAAATGGCTCGAC--ATAC-AT---TA-GTCAAGTTAAA-GAA-AC-TTA-TTAGAGGGC-G--AAAGAATGTTTTCTAGAAAA-A---TAGTACTCGC-GC--AGAAA-GGCTAT-ACGGAGC-ACTAACCGACC-AAACATAGTAATGAAGACCTGGCTAG-CA---GATC-GGGATAGTGGTTA-GGAT-CGGATCGAAACGTTGAGCAAGTTGGAAAAGCGAAATGCTTCAACAGCGCTTCTTATAGTGAAATAAACGTACGACAAAA-C-CA-C-AATTACCAATAAA-TAAAACAAAT--AGTAAATAATCT-CACAAAAAAGGATCCATTGTGCGTCTGAATTAAGACATTAATCTTCCTA-CCACCGAATTGGACA-TCCCGGAAAACTCCAAAGCTAAAGTCCGAAAA-TAC-CAAAGA--GA--ACAGATCG------TCGAA-CTGATA---G-AAATGA-CGACAGCAACCCAAGG---AATTAAGCCGAGTACG-----GTTGAGTC-CAACTC--G-GAATGCAAAT-AGTCGCTCTGATAGTTTATGTATCATCATCCGACA-GATTTTTTAACGAAAC-TTCAATTTGGTGAAACAACCATTACCAGACCCCTTGTATTC---TTTT-GCATT----GGA--TAAAAGCTC-TTACCCCAGTCT--C-T-G-AAAGAACCGCGCGAATGTCATT------GAAAAT-CTTAACA--AACGTCATGAAAAGAAGTAGACCACGGAAATGTGTATTGCGAAA-GATGGATTGCTTGGTCC-T-GAAATTAAT-A--ATTTTTTTCTCACATCCATTTACACAAATCGAT-AAACAC-ACATTCATAGCCGAAAGTACTGCTATC--AT-CGAAACTTGGT--CG-AA--ATGC-TGTG-TTTCATATTGGG---A---GGATGGAAAG-A---C--GCT--TTTTG-AAAAT---CTGCAAAAGC-ACTCCAGTATTTTA-TGGTATC-GA--TAGAT----TGA--GACATTTT-T---GCCAT-CTGA--CGGAA-ATGA--AAAGA-A-CTTAAAATC-ATTTCATA--AAACCGC-GAACTGA------ATTTAACATCCGAATAT-TCAGCT-TGA-CCGTGC-GCCA--------A-CTAAGA-CAATAACGGATTTCC-TGAT---GT--ACGAT-TCAA--AAC---ACGGATTCC-TTTCT--CAGACCTTTATT-GCAT----AC-C-TAC---GTAA-----A------CATA--TACT---------A-TAAAA-CTCTAACTCA--CC-GAACCCAC----------AAGAAAGCGTAT-TCCT-TT--GACT-TCGGTCG-ATCGTGCGGC--GT-AAAA-----GTTACGAC--TGAA---AACACT--CAGT-TTAAAACTG--AA---GA-AAT-------CA-AAA---ATAACTTA----AGAAA--GCGGT---TA-TTAGAT-ATGAT---T--GAAAAAGAA-CTCAT-A-AA-GT--A--T--A-CTCG-ACCGATCAA--CTCCA-TAA-C-ACAGAAAA----GCGAG--AAGCAG-C-TTATCG-TGTTCCCC-TTGTTAGTAA---ACT-A-TC-TAAA--GACTCC-CAAATATTCAT-GAATTAAAAAA-AAAAAAATTCGAA-AAAAAAATCTTGAG
gi|3 : cGAAAACGAAGCTATAAAATCTAACATA------AC-AAAAGAAAAAGAAGTAACCATCTTGTC-TTCCAGGAAAGT----AAA--TAAGCAATTACGCTTAGTTGAG-AAAAGGGTTGAAATTTGTACCGACGATGCAAAATATCGATTTTAATATACTCA---GTTG-TT----------------AACGGA--TTAAAAAACATGAGAACGTAAGA-TACGTCTGTGGGGATATTTTTTTTTTC--GAATAAAGAATCCGAGAAAGAATCATCTTCAAGTAATGATGAA-GGTTACAAATGTGAAAA-TTA-TAAAGATAATTGGAC-ACC-GGAAGAAGGAAGAGACAAATGGATC-ATGAAAAG-AT---TA-GAGTAGTCAAA-GAAGAC-GTAATTAA------GAAAAAGGAATTTTTCTTG-CAATACTTTATTACGCGCGGCAAAGAAAGGGCTATGAAAGAACTAGTGACCGACCAAAACATAGTTAT-TAGACCTG--CAGACAAAGGATCTGGGATAACGATAATGGATTCGGATAAATACGTCGATCAAG-TAGAAAAT-GAAATGCTT--ATAGTGCGTCTTACAGTGAAATAAA-GTACGGCAAAAGC-AAACAAATTACCAATAAAATGAAATAAAA--AGTAAATAATATACATGAAAAAGGACCCATT-T-CTTCTGAATTAAGACATT-AT-TTCCTACCCAGTGAAGTG-ATAGT-CAGGGATACTCCAAGGT--AA-TCC-AAAACTACACAA--AAAGA--ACAATCCGT----TTCGAA-CT-ATATAGGTAAATGGCCGACAACATCCGACGGAAAAATC-AGCCCAGTACCGGTATGTTGAGTAGCAACTCTCGAGAGTGCAAATAG-----------AG-TTATGTA-CAAGATACTACA-GATTTTTAAAAGAAACTTTTAATT--GTAAAGTAACCATTACCAGA-TTCCTCTGTTC-TATTCT-GTA-TATGTGGACGTGAAAGTACTATACCTCAGTATACC-A-GAAAAAAAGCTCGCG-ATATCATTTTTTTTAAAAAGGCAGTACAAGAGCGTCATAAA------TA--------AAA-ATATATTA-GAAATGATGGA-TGCT--GTTCCT-GACA----------------------------TT-----AAT-AAT-AAACACTACATTCAGA-CTGAAGGaagcctgacgcccctcaaaaatgctttcccaaa
gi|3 : ---G---GGAGGGGAAT-AAATC--CTT--TTTTTTTTTAT---TTA-AAAACCTA--CCAGTATTTTA-A-GTA-C-AA--TATAT----TGAT-GACA-TTT-TTTTGGCAT-CTGAACTGGAA-CAGA--AGAACTA-C--AAA--TAAT-----------CCGC-AAA-TGATATACTAGT--ACATCCAAACAG-TCAGGC-TGA-CC-TGC-GACA--------ATACAATATCAAA--TTGATTTCCTTGAT---GT-AACGATCTCAAT-AA-AG-ACGTATTTA-TTTCT-TCTGCTTTATATT-GCAA----AC-C-TAT-CGATAA-----A------CATATGTACCT------TAA-TAAAAGCTCTAAC-TATCCC-GAATCCAC---------AAAAATTGC-TAT-TCCC-TTTGAATT-T-AGTCT-A-ATTGC-GC--GT-AAAATAT--GCT-CCAC--AAAT--GAAAAATGCCAGA-TTCAA--CG--AAAG-TA-AATAATAAAAAA-AAA---AAAACTTA----AGAAAACgaggggaataaatcctttttttttttatttaaaaacctaccagtattttaagtacaatatattgatgacatttttttggcatctgaactggaacagaagaactacaaataatccgcaaatgatatactagtacatccaaacagtcaggctgacctgcgacaatacaatatcaaattgatttccttgatgtaacgatctcaataaagacgtatttatttcttctgctttatattgcaaacctatcgataaacatatgtaccttaataaaagctctaactatcccgaatccacaaaaattgctattccctttgaatttagtctaattgcgcgtaaaatatgctccacaaatgaaaaatgccagattcaacgaaagtaaataataaaaaaaaaaaaacttaagaaaac
gi|4 : gaaaacgaagctataaaatctaacataacaaaagaaaaagaagtaaccatcttgtcttccaggaaagtaaataagcaattacgcttagttgagaaaagggttgaaatttgtaccgacgatgcaaaatatcgattttaatatactcagttgttaacggattaaaaaacatgagaacgtaagatacgtctgtggggatattttttttttcgaataaagaatccgagaaagaatcatcttcaagtaatgatgaaggttacaaatgtgaaaattataaagataattggacaccggaagaaggaagagacaaatggatcatgaaaagattagagtagtcaaagaagacgtaattaagaaaaaggaatttttcttgcaatactttattacgcgcggcaaagaaagggctatgaaagaactagtgaccgaccaaaacatagttattagacctgcagacaaaggatctgggataacgataatggattcggataaatacgtcgatcaagtagaaaatgaaatgcttatagtgcgtcttacagtgaaataaagtacggcaaaagcaaacaaattaccaataaaatgaaataaaaagtaaataatatacatgaaaaaggacccatttcttctgaattaagacattatttcctacccagtgaagtgatagtcagggatactccaaggtaatccaaaactacacaaaaagaacaatccgtttcgaactatataggtaaatggccgacaacatccgacggaaaaatcagcccagtaccggtatgttgagtagcaactctcgagagtgcaaatagagttatgtacaagatactacagatttttaaaagaaacttttaattgtaaagtaaccattaccagattcctctgttctattctgtatatgtggacgtgaaagtactatacctcagtataccagaaaaaaagctcgcgatatcattttttttaaaaaggcagtacaagagcgtcataaataaaaatatattagaaatgatggatgctgttcctgacattaataataaacactacattcagactgaaATTGA-TGCT--GTTCTT-GATAATGAT-A--A------------------------------AT-AAACATTACATTCAGA-CTGAAGGGACCGCTATTGGAT-CAAAACTTG-----------ACGACCGTA--TT-GCAT--GG---GGGTGGGTGGGAGC-AAATCTTCTT--TTTTTTTAAAT---CTG-AAAAGCTA--TC----------------C-GA--TATGT----TGAT-GACA-TTT-T---GGCAT-CTGGATCGGAA-C------------------------------A--AAACCGC-GAA-TAA------AGT--ACATCAGAACAT-TCAGCT-TTC-TC-TACGGCTACAACACATATCTAACA-CCAAAACG
gi|4 : aAAAGCCGGATTTCCTTGAT---AT-AATGATTTTAAT-AACAG-AAGGCTTCCCTTTCT-ACTGACTTTTACT-GCAATAAAACTC-TAA-CGATAA-----AGATACACGTATGTACATGTATCATAA-CAAAAGCTCTATC-CG-TCCAGAATCTAC---------AACAAAC-C-TAC-CCCC-TTTGGACT-T-ATCCT-C-CGTGC-GC--TT-AG---AT--GTT-CTAC--GGAATTTAAAA-TACTAGA-TTCAA--CG--AAAG-GA-ACT------AAAGAGA---AT--CTT-----AGAAAACATGCT---TATTTAGATAATGACG--AAGAAAAAAACC-CTT-TTA-AA-ATACA------------------CAAATCTCCT-AAA-CTACAGGGAA-AATACG----AAGCGG-TATAACTGTTGT--CTT-TTG-TGGTAA---ATT-GTTC-Tcagatcgaaagtgcgaatagatctcaagattgatagttatattatattgtatgtacattttaaaaaagaaagaaagccggatttccttgatataatgattttaataacagaaggcttccctttctactgacttttactgcaataaaactctaacgataaagatacacgtatgtacatgtatcataacaaaagctctatccgtccagaatctacaacaaacctaccccctttggacttatcctccgtgcgcttagatgttctacggaatttaaaatactagattcaacgaaaggaactaaagagaatcttagaaaacatgcttatttagataatgacgaagaaaaaaacccttttaaaatacacaaatctcctaaactacagggaaaatacgaagcggtataactgttgtcttttgtggtaaattgttct
gi|5 : aattgatgctgttcttgataatgataaataaacattacattcagactgaagggaccgctattggatcaaaacttgacgaccgtattgcatgggggtgggtgggagcaaatcttctttttttttaaatctgaaaagctatccgatatgttgatgacattttggcatctggatcggaacaaaaccgcgaataaagtacatcagaacattcagctttctctacggctacaacacatatctaacaccaaaacgcagatcgaaagtgcgaatagatctcaagattgatagttatattatattgtatgtacattttaaaaaagaaagAA-TCC-AAAAATACACAA--A--GAGAACAATCCGTGCGTTTCGAA-CT-ATA---GTAAATG-CCAACAGCACCCGACGGAAAAATT-AGCCGAGTAC------GTTGAGTCACAACTC--GAGAAAGCAAATA-GTCGCT-TGATAG-TTATGTA-CAAGATACGACATAATTTTTT-AAGAAACTTTCAATT--GTGAAACAACCATTACCAGA-CCCTTGTATTCTT-TTTT-GCA-T----GGATGTGAAAGCTCTTTACCCCAGTATACCTT-GAAAAGAAGCGTGCG-ATGTCATT------AAAAATGCTTTACAAGAACGTCATGAAAAGAAGTAGA-CACGGAAA-GTGTA-TA-GAAATGATGGA-TGAT--GT-CTT-GATAATAATAA--ATTTTAGT----------TTT-----AAT-GAT-AAACACTA-ATTCAGA-CCGAAGGTACCGCTATCGGAT-CGAAACTTGGT--CATAACTACGCTTGTG-TTT-ATAT--GG---G---GGATGGGA---AAATC--C-T--TTTTGAAAAAT---CTG--AAAGCTA--CCAA-ATTTTA-T-GTA-C-GG--TATAT----TGAT-GACA-TTT-T---GGCAT-CTGGA-CGGAA-CAGA--AGAAT-A---TAAA--CAATTTCATA--AAACCGC-GAA---G------AAT--ACATCCGAATAT-
gi|6 : -TCAGCT-TGA-C--TGC-GCCA--------ATCTAATA-CAAAA-CGGATT-CCTTGAT---GT-AACGATG-CAAT-AACAG-ACGGATTCC-TTTCT-ACAGACTTGTATT-G-AA----AC-C-TAC-CGACAA-----A------CAT--GCACCT------TGA-TAAAA-CTCTAAC-CACCCC-GAATCCAC---------AAAAAAAGC-TAT-TCCC-TTTGAA-T-T-GGTCT-G-CGTGC-GC--GT-AGAATAT--GTT-CAAC--AGAA--GAAAACTATCAGA-TTCAA--CG--AAA--GA-AAT-------AA-AAA---ATAACTT-----AGAAAA-GCGGG---TA-TTAGATAATGATA--TAG--AAAAGAACCTCATCA-AA-GTAGA--TAAA-CTCG-A-CGATCAAATCTCCTAAAA-CTACA-AAAA-AAGACG----AAGCAG-TATAATCG-TGTTCCCC-TTG-TAGTAA---ACT-ATTC-TAA---GACTTC-C-CATATTCATAAATTTAAAAAA-TA---------AC-AAAAAATTTCTGAG
gi|7 : -TGCT--GTCATTCGATAATAAT-ATAATTATAGT----------TTA-----AAT-GATTGAACACTACATTCAG--CC-AAGGTACCG-TA-CGGATGCGAAACTTGGTGCCGTAA-TACGCTTGTGGTTT-TTAT--GGCAGG---GGATGG--AG-AAATC---TT--TTTTGAAAAAT---CTG-AAA-GCGT--TCAGTATTTAC-T-G-A-C-GAAGTATAT-----GATTGACA-TTT-T---TG-ATACTG-ACCGGAAACAGAGAAGAAG-A--TTAAA--CAATTTCATACAAAACCGCCGAA-TGA------AAT--A-ATCCCGATATATCAGAT-TGA-CCATGC-GCCA---------TCTAATA-CAAAAACGGATTC---TGAT---GTTCACGAGCTCAAT-AAAGA-ACGGATCC---TTCT-A--AGCTTGTATTTGCAA----AC-CATACGCGATAA------------CATATGTACCT------TAAATAAAACTTCTAAC-CA-CCC-GAATCCAC---------AAAAaactctgaccgctcaaaatgcttccaa
gi|8 : ACTT-TATT-GGAGC---GC-C-TAC---ATAA-----T------TATAT--------------A-TAAAAGCTCGAAC-CA-CGG-AGATCCATCTCAAAAAAAAAAAAAAC-TAT-TCCCCTTTGGACTAT-GGTCTTA-CGTGC-GT--GTTATAATATTCGTT-CAACTTA-AA--GAAAA-TACCAAA-TTAAA------AAAA-AACAAC------AAC-AAC---A-AACGTATAGTAGAACAC-CGGTGAATAT---GATAATGAGAAATAGAAAAAGAAA-CTCATCATAATGTAGAACTGAATCTCGGACTGATCTAATCTCCA-AAAGCTAT-GAAAA-AAGACG----AAGCAGATAGAATCG-TGTTCCCCATTG-T--TACGTTACTAATTCTTAAAGAAATTTC-C-AATA-TCATAAA--TAAAAAA-
gi|9 : -ATA---GG---G---GGATCGGAACCAAAAC--ATTATTTTTGAAAAAAAAACTT-AAAAGCTA--C--ATATGTTACT-GTA-CCGA--TACATGTAATGAA-GACG-TTT-TTG-GAAAT-CTGGATCAGAA-CAGA--AGAAC---CTTAAAA-CAATT-----------------------------AT--ACATTC-----------CTATGAACC-TG-----A--------AC--AATAACCAAAACAGAGCTCCT-GAT---GT-AAAAAACTCAATTAACGGCGCGCATTCT-CTTCTCACTGATTAATATT-GCAA----CG-C-TACTCGATAATATATG------CACATGTACCT------T-A-T-AAAGCTCTGAT-TC-CCT-GAA-CCAC---------CAAAGAA---TACATCCC-TTT
Alignments
lowQualScore : 1 1 222222 11 1 1 11 1 1 2 77777777777777777777777777777777777777 11 1 2222222 1 333333 111 11111111 11 1 2222 1 111 1 111 2 1 111 1 44444 1 1 11 11 2 1 1 11 1 1111 1 11 1 1 111 1 1111111 1 1 2 11111 11 22222 1 1 111 333333 11 1 1 1 1 11 1 222 1 222222 1 111 1 222222 1 1 1 555555555555555555555555555555 111111111 1111111 1111 111 1111 111 333333333333333333333333 1111111111 11111111 1111 333333333333 11111111 1 1111111111 11 1111111 11111 11111 111 1 2222 111 222222 1
lowQualScore : 1 5 5 7 999999 6 7 6 00 3 2 7 33 3 8 0 0 0 1 1 1 0 1 66666666666666666666666666666666666666 33 9 2 9 0 0 9 5555555 0 3 777777 11 333 1 3 44444444 11 3 3 0 5555 3 2 8 0 777 0 1 000 8 0 0 3 000 3 3 44444 3 6 2 6 6 7 7 3 88 7 11 7 0 1 7 6 0 0 3 3 44 1 3 6 6666 7 3 1 88 2 2 777 3 6 6 6 8888888 999 0 0 0 3 88888 33 44444 0 0 777 3 99 1 0 8 111111 3 11 0 44 0 0 0 8 0 44 3 33 0 333 0 222222 0 3 3 777 3 0 888888 2 3 3 0 2 0 0 3 0 3 6 99 3 1 6 3 444444444444444444444444444444 6 6 6 0 8 777777777 3 3 88 6 99 2222222 888 2222 77 5 000 5 1 77 1 0 777 0 5 5 66 0000 55 5 5 555 5 0 3 5 0 66 444444444444444444444444 5 6666666666 66 2 2 4 4 4 8 4 66666666 0 8 0 0 777 4 0 4 666 44 4 2 6 4 2222 4 4 8 333333333333 0 66666666 4 4 4 8 2 9999999999 00 4 4 4 5 5 888 5 66 5 0 66 5 0 77 888 7 11 5 66 66 99 5 9999999 4 00000 33333 888 000 5 777 3 0 5 1 5 5 8888 5 5 4 0 1 5 00 5 7777 0 5 1 5 5 5 2 000 5 5 99 6 6 3 6 000000 0
lowQualScore : . . . . ...... . . . .. . . . .. . . . . . . . . . . ...................................... .. . . . . . . ....... . . ...... .. ... . . ........ .. . . . .... . . . . ... . . ... . . . . ... . . ..... . . . . . . . . .. . .. . . . . . . . . . .. . . . .... . . . .. . . ... . . . . ....... ... . . . . ..... .. ..... . . ... . .. . . . ...... . .. . .. . . . . . .. . .. . ... . ...... . . . ... . . ...... . . . . . . . . . . . .. . . . . .............................. . . . . . ......... . . .. . .. ....... ... .... .. . ... . . .. . . ... . . . .. .... .. . . ... . . . . . .. ........................ . .......... .. . . . . . . . ........ . . . . ... . . . ... .. . . . . .... . . . ............ . ........ . . . . . .......... .. . . . . . ... . .. . . .. . . .. ... . .. . .. .. .. . ....... . ..... ..... ... ... . ... . . . . . . .... . . . . . . .. . .... . . . . . . . ... . . .. . . . . ...... .
lowQualScore : 0 0 5 3 777777 7 3 7 33 3 0 3 88 2 8 0 0 0 0 0 0 2 0 88888888888888888888888888888888888888 88 8 5 2 0 2 8 0000000 0 2 000000 22 555 0 2 22222222 22 2 2 0 0000 2 5 8 0 555 0 2 222 8 0 0 2 555 2 3 00000 7 7 0 7 7 3 3 3 33 3 00 3 7 0 3 7 7 7 3 3 00 0 3 7 7777 3 3 0 33 0 0 777 3 7 7 7 0000000 333 0 0 0 2 55555 88 55555 0 0 555 2 00 4 8 0 000000 8 00 8 66 0 0 0 8 0 22 2 88 0 222 0 222222 5 2 2 555 2 0 888888 5 2 2 2 5 0 0 2 0 2 7 22 7 7 7 5 333333333333333333333333333333 7 7 7 8 0 000000000 2 8 88 7 22 3333333 999 3333 99 4 000 7 4 99 4 1 222 1 0 0 99 6666 44 0 0 666 0 2 4 0 4 99 444444444444444444444444 0 6666666666 99 5 9 0 4 4 9 4 11111111 8 9 6 7 888 4 1 4 222 66 4 3 4 0 5555 0 0 0 000000000000 7 88888888 0 1 0 0 0 2222222222 44 4 4 4 7 7 000 0 99 0 1 99 0 3 99 666 9 99 7 99 99 55 0 5555555 4 77777 00000 888 000 0 888 2 2 0 4 0 0 4444 7 7 3 6 4 7 99 7 7777 1 7 4 7 7 7 3 000 7 7 22 7 7 5 7 888888 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACTTTACCCCNTGAAGAAAAAGAGTTAGAAAACGAAACTATAGAATCTAACATAC-ATG-ACCAAAAGAAAAGGAGGTAATCATCCTGTC-ATCCAAGAAAGTTAACAAC--TGAGCAATTAAGCTT-GTTG-G-ANAAGGNCTGAAATNTGTACCGACANAGCAAAATATTGATTTTA-----CTCG---ATTG-TT----------------AA-GGA--TTAAAAAACATGGGAACGTAGGA-TGCGTCTGCGGGAATATTTTTT----C--GAA-AAAGAATCCGAGAATGAACCATCCTCAAGNAATGACGAA-GGTNACAAATGTGAAAA-TTT-TAAAGGTAATTGGAC-ACC-G-AAGAAGGAAGAGACAAATGGCTCGATGAATAC-AT---TA-GACAAGTCAAA-GAAGAC-TTA-TTAGAGGGC-GAAAAAGAATTTTTTCTAG-AAA-A---TATTACGCGCGGCGAAGAAAGGGCTATGAAGGAGCTACTAACCGACCAAAACATAGTAAT-AAGACCTG--CAGACAAGGGATCTGGGATAGCGGTNATGGAT-CGGATAAATACGTCGATCGAG-TGGAAAAG-GAAATGCTTCAANAGCGCTTCTTATAGTGAAATAAA-GTACGACAAAAGC-AA-CAAATTACCAATAAA-TAAAANAAAT--AGTAAATAATATGCACGAAAAAGGATCCATT-T-CGTCTGAATTAAGACATT-ATCTTCCTACCCACCGAAGTGGACA-T-CCGGAAAACTCCAAGGCTAAA-TCC-AAAA-TACACAA--A--GA--ACAATCCGT----TTCGAA-CT-ATA---GTAAATGGCCGACAGCACCCGACGGAAAAATT-AGCCGAGTAC------GTTGAGTCACAACTC--GAGAATGCAAATAAGTCGCT-TGATAG-TTATGTA-CAAGATACGACA-GATTTTTNAAAGAAACTTTCAATT--GTGAAACAACCATTACCAGA-CCCTTGTATTC-T-TTTT-GCA-T----GGACGTGAAAGCTCTTTACCCCAGTATACC-T-GAAAAGAAGCGCGCG-ATGTCATT------AAAAATGCTTTACAAGAACGTCATGAAAAGAAGTAGA-CACGGAAA-GTGTATTA-GAAATGATGGA-TGCT--GTCCTT-GATAATAAT-A--ATTTTAGT----------TTT-----AAT-GAT-AAACACTACATTCAGA-CCGAAGGTACCGCTATCGGAT-CGAAACTTGGT--CGTAACTACGCTTGTG-TTT-ATAT--GG---G---GGATGGGAAN-AAATC--CTT--TTTTGAAAAAT---CTG-AAAAGCTA--CCAGTATTTTA-T-GTA-C-GA--TATAT----TGAT-GACA-TTT-T---GGCAT-CTGGACCGGAA-CAGA--AGAAN-A-CTTAAA--CAATTTCATA--AAACCGC-GAA-TGA------AAT--ACATCCGAATAT-TCAGCT-TGA-CC-TGC-GCCA--------ATCTAATA-CAAAAACGGATTTCCTTGAT---GT-AACGATCTCAAT-AACGG-ACGGATTCC-TTTCT-ACTGACTTGTATT-GCAA----AC-C-TAC-CGATAA-----A------CATATGTACCT------TAA-TAAAAGCTCTAAC-CA-CCC-GAATCCAC---------AAAAAAAGC-TAT-TCCC-TTTGGACT-T-GGTCT-A-CGTGC-GC--GT-AGAATAT--GTT-CAAC--AGAA--GAAAACTACCAGA-TTCAA--CG--AAAG-GA-AAT------AAA-AAA---ATAACTTA----AGAAAACGCGGT---TATTTAGATAATGATA--TAGAAAAAAGAA-CTCATCA-AA-GTAGA--TAAA-CTCG-ACCGATCAAATCTCCT-AAA-CTACAGAAAA-AAGACGA---AAGCAG-TATAATCG-TGTTCCCC-TTG-TAGTAA---ACT-ATTC-TAAAG-GACTTC-C-AATATTCATAAAATTAAAAAA-AAA-----TCGAC-AAAAAATTCTTGAG
Reference ( family-5727 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACTTTACCCCNTGAAGAAAAAGAGTTAGAAAACGAAACTATAGAATCTAACATAC-ATG-ACCAAAAGAAAAGGAGGTAATCATCCTGTC-ATCCAAGAAAGTTAACAAC--TGAGCAATTAAGCTT-GTTG-G-ANAAGGNCTGAAATNTGTACCGACANAGCAAAATATTGATTTTA-----CTCG---ATTG-TT----------------AA-GGA--TTAAAAAACATGGGAACGTAGGA-TGCGTCTGCGGGAATATTTTTT----C--GAA-AAAGAATCCGAGAATGAACCATCCTCAAGNAATGACGAA-GGTNACAAATGTGAAAA-TTT-TAAAGGTAATTGGAC-ACC-G-AAGAAGGAAGAGACAAATGGCTCGATGAATAC-AT---TA-GACAAGTCAAA-GAAGAC-TTA-TTAGAGGGC-GAAAAAGAATTTTTTCTAG-AAA-A---TATTACGCGCGGCGAAGAAAGGGCTATGAAGGAGCTACTAACCGACCAAAACATAGTAAT-AAGACCTG--CAGACAAGGGATCTGGGATAGCGGTNATGGAT-CGGATAAATACGTCGATCGAG-TGGAAAAG-GAAATGCTTCAANAGCGCTTCTTATAGTGAAATAAA-GTACGACAAAAGC-AA-CAAATTACCAATAAA-TAAAANAAAT--AGTAAATAATATGCACGAAAAAGGATCCATT-T-CGTCTGAATTAAGACATT-ATCTTCCTACCCACCGAAGTGGACA-T-CCGGAAAACTCCAAGGCTAAA-TCC-AAAA-TACACAA--A--GA--ACAATCCGT----TTCGAA-CT-ATA---GTAAATGGCCGACAGCACCCGACGGAAAAATT-AGCCGAGTAC------GTTGAGTCACAACTC--GAGAATGCAAATAAGTCGCT-TGATAG-TTATGTA-CAAGATACGACA-GATTTTTNAAAGAAACTTTCAATT--GTGAAACAACCATTACCAGA-CCCTTGTATTC-T-TTTT-GCA-T----GGACGTGAAAGCTCTTTACCCCAGTATACC-T-GAAAAGAAGCGCGCG-ATGTCATT------AAAAATGCTTTACAAGAACGTCATGAAAAGAAGTAGA-CACGGAAA-GTGTATTA-GAAATGATGGA-TGCT--GTCCTT-GATAATAAT-A--ATTTTAGT----------TTT-----AAT-GAT-AAACACTACATTCAGA-CCGAAGGTACCGCTATCGGAT-CGAAACTTGGT--CGTAACTACGCTTGTG-TTT-ATAT--GG---G---GGATGGGAAN-AAATC--CTT--TTTTGAAAAAT---CTG-AAAAGCTA--CCAGTATTTTA-T-GTA-C-GA--TATAT----TGAT-GACA-TTT-T---GGCAT-CTGGACCGGAA-CAGA--AGAAN-A-CTTAAA--CAATTTCATA--AAACCGC-GAA-TGA------AAT--ACATCCGAATAT-TCAGCT-TGA-CC-TGC-GCCA--------ATCTAATA-CAAAAACGGATTTCCTTGAT---GT-AACGATCTCAAT-AACGG-ACGGATTCC-TTTCT-ACTGACTTGTATT-GCAA----AC-C-TAC-CGATAA-----A------CATATGTACCT------TAA-TAAAAGCTCTAAC-CA-CCC-GAATCCAC---------AAAAAAAGC-TAT-TCCC-TTTGGACT-T-GGTCT-A-CGTGC-GC--GT-AGAATAT--GTT-CAAC--AGAA--GAAAACTACCAGA-TTCAA--CG--AAAG-GA-AAT------AAA-AAA---ATAACTTA----AGAAAACGCGGT---TATTTAGATAATGATA--TAGAAAAAAGAA-CTCATCA-AA-GTAGA--TAAA-CTCG-ACCGATCAAATCTCCT-AAA-CTACAGAAAA-AAGACGA---AAGCAG-TATAATCG-TGTTCCCC-TTG-TAGTAA---ACT-ATTC-TAAAG-GACTTC-C-AATATTCATAAAATTAAAAAA-AAA-----TCGAC-AAAAAATTCTTGAG
gi|1 : AACACTTTACCCCATGAAGAAAAAGAGTTAGAAAACGAAACTATAGAATCTAACATAC-ATGTACCAAAAGAAAAGGAGGTAATCAACCTGTC-ATCAAAGAAA-TTAACAAC--TGAGCAATTAAGGTT-GTTG-GGAAAAGGTCTGAAATTTGTACCGACAAAACAAAATATTGATTTTA-----CTCA---ATTG-TG----------------AA-GGGATTTAAAAAACATGGAAACGGAGGA-TGCGTCTGCGGGAATATTTTTT----C--GAA-AAAGAATCCGAGATTGA------CTCAAGAAATGACGA---GTAACAAATATAAAAAATTC-TAAAGGTAATTGGAC-ACCCG-AAGAAGGAAGAGACAAATGGCTCGATGAATAC-AT---TA-GACAAGTTAAAAGAAGACGTTA-TTAGAGGGCTGAAAAAGAATTTTTTCTAG-AAA-----TATTACACGCGGTGAAGAAAGGGCTATGAAGGAGCTACTAACCGACCAAAACATAGTAAT-AAGACCTG--CAGACAAGGGATCTGGGATAGTGGTCATGGATGCGGATAAATACGTTGATCGAG-TGGAAAAG-GAAATGCT-CAAAAGCGCTTCTTATAGTGAAATAAA-ATACGACAAAAGCCAA-CAAATTACCAAATAA-TAAAAAAAATTTAGTAAATAATATGCAC-AAAAAGGATCCATT-T-CGTCTGAATTAAGACATT-ATCTTC-TACCCACCGAAGTGG-CA-T-CCGGAAAACTCCAAG-CTAAA-TCC-AAAA-TACACAA--A--GG--ACAATCCGT----TTCGAAACT-ATA---GTAAATGGCCGACAGCACCCAACGGAAAAATT-AGCCGAGTAC------GTTGAGTCACAACTC--GAGAATGCAAATAAGTCGCT-TGATAG-TTATGTA-CAA-ATACGACA-GAATTTTGAAAGAAACTTTCAATT--GTGAAACAACCATTACCAGA-CCCTTGTATTC-T-TTTTTGCA-T----GGATGTGAAAGCTCTTTACCCCAGTATACC-TAGAAAAGAAGCGCGCG-ATGTCATT------AAAAATGCTTTACAAGAACGTCATGAAAAAAAGTAGA-CACGGAAA-GTGTATTA-GAAATGATGGA-TGCT--GTCCTT-GATAATAAT-A--ATTTTAGT----------TTT-----AAT-GAT-AAACACTACATTCAGA-CCGAAGGTACCGCTATCGGAT-CGAAACTTGGT--CGTAACTA-GCTTGTG-TTT-ATAT--GG---G---GGATGGGAAA-AAATC--CTT--TTTTGAAAAAT---CTG-AAAAGCTA--CCAGTATTTTA-T-GTA-C-GG--TATAT----TGAT-GACA-TTT-T---GGCAT-CTGGACCGGAA-CAGA--AGAAG-AACTTAAA--CAATTTCATA--AAACCGC-GAA-TGA------AAT--ACATCCGAATAT-TCAGCT-TGA-CC-TGC-GCCA--------ATCTAATA-CAAAAACGGATTTCCTTGAT---GT-AACGATCTCAAT-AACAG-ACGGATTCC-TTTCT-ACAGACTTGTATT-GCAA----AC-C-TAC-CGATAA-----A------CATATGTACCT------TAA-TAAAAACTCTAAC-CA-CCC-GAATCC-C---------AAAAAAAGC-TAT-TCCC-TTTGGACT-T-GGTCT-A-CGTGC-GC--GT-AGAATAT--GTT-CAAC--AGAA--GAAAACTATCAGAATTCAA--CG--AAAT-AA-AAT------AAA-AAA---ATAACTTA----AGAAAACGCGGT---TATTTAGATAATGATA--TAGAAAAAAGAA-CTCATCA-AA-GTAGA--TAAA-CTCG-ACCGATCAAATCTCCT-AAA-CTACAGAAAA-AAGACGA---AAGCAG-TATAATCG-TGTTCCCC-TTG-TAGTAA---ACT-ATTC-TAAAG-GACTTC-C-AATATTCATAAAATTTTAAAA-AAA-----TCGACAAAAAAATTCTTGAG
gi|10 : ccaacaaatgtttaattcaaccgataca--TGAGGAATTAAACTT-GTTG-GTACAAGTATTGAAATGTATACCCAAACAGCAAAACATTGAATTTA-----TTCGTGCATGG-TTTTTTTTGGGGGGGGGGGC-GGA--TTTAAAAACATGGAAA-GTTAGA-TGCGTTTGGGGGAATTTTTTTT----C--AAA-AAAGACTACAAAAATGAACTATCTTCAATTAATGGTGAAAGGTTGCA----TG------TT-TAAAAA-AAT----C-AT----AAGAATGAAGAGACAAATGGCTCGATTAATACGATACATATGGCAAGTCA----TACACTTTA-TCTGAGGAT-TAAGAAG
gi|11 : TATCTTA-T-GTA-C-AA--TAATT----TGAT-GACA-TTTAT---TGCAT-ATAGACCGCCA-CAGA--GGAA----CTTAAA--CAA-----------ACT----AA-TGC------AAT--A---------------GCC-TAA-AC-TGC-AACC--------ATCTAG------GAA--GATTTTATT-ATTTTGT-AACGATCTCAAT-AACAT-ACGGATTCC-TTTAT-ACTGATTTATGTT-GTAT-----C-A-TAC-CGATAA-----A------C--------CT-------------AAGC---AAC-CA-CCCCGAATCCAC----------ATAAAACC-TAT-TCTT-TTT
gi|12 : TCAG--CG--AAAG-AA-AAT------AAA-GAA----TAATTTA----AGGAA---C--------TTGAGATAATGATG--TAGAAGGAA-AA-TTTATAA-AA-GTAGA--TAAA-CTCG-AGCAATCGAATTTCGT-AAA-CTA-ATAAAACAAAACAATCGAAGC---------CG-TGTTCATT-TTG-TGGTAA---ACT-ATTC-TAAAG-CATTTCAC-AATATTCACAAAATTAAAAAA-AAA-----TCt
gi|13 : AATA-TCAAAACAGAGTTCCTTGAT---GT-AAAGATCTCAAT-AGCGG-GCGGATTCC-TTTCT-ACTGATTAATATT-GCAA----AC-C-TAC-CGATAA-----ATATATGCACATGTACCT------TAA-TAAAAGCTCTGAT-TA-CCCTGAATCCAC---------AAAATA--C-TA--TCCC-TTTGGACT-T-GGTGT-A-TATGC--CAAGA-AGAATAT--GTT-
gi|14 : -AAA---ACAACTTA----GGAAAACGCAGT---TATTTACATAATGATA--TAGAAAA-AGAA-CTCATCA-AA-GTAGA--TAAA-CTCG-ACCGATCTAATCTCCTAAAA-CTACAG-AAA-AAGACGA---AA-CAA-TATAATCG-TGTTCCCT-GTG-TAGTAA---ACT-ATTC-TAAAG-GAC
gi|15 : C-C-AATATCCTCAAAATTAAAAAAGAAA-----TCGAC-AAAAAATTCTTGAG
gi|16 : cC-GT--AT-AGAATAT--GTT-CAAC--AGAA--GAAAGCTAGTCGA-GTCAA--CGGAAAAGAGA-AAT------GAA-AAACGGA-AATCTG----AGAAAaactctgaccgccccaaatatgctttccaaaa
gi|17 : ACCCAACGGAAAAATT-AGCCGAGTAC------GTGGAGTCACAACTC--GAGAATGCAAATAAGT
gi|18 : tatatatatatatatatatTTAGATAATGAGA--TAGAAAA-AGAA-CTCATCA-AA-GTAGA--
gi|19 : ATCCGAATAT-TCAGCT-TGA-CC-TGC-GCCA--------ATC
gi|2 : aattgAACACTTTACCCCCT-AAGAAAA-GAGTTAGAAAACGAAACTCTAGAA-CTAACATACCATG-ACCAAAAGAAA-GGAG-TAATCAT--TGCCCATCCAAGAAAATTAACAACAATGAGCAA-TAAG-TT-GTTG-G-ATAAGGTCTGAAAAGTTTACCGACATAACAAAATATTGATTTTA-----CC-----ATTGATT----------------AA-CGA--TT--AAAACATTGGAACG-AGGATTGCTCCTGCGGGAAT-TATTTT----CAAGAA-AAAGAATCCGAG-ATGA------CTCAGAAAATGACGAA-AGTAACAAAT---AAAA-TTTGTAAAGGTAATTGGACAACC-C-AAGAAGGA--AAACAAATGGCTCGAC--ATAC-AT---TA-GTCAAGTTAAA-GAA-AC-TTA-TTAGAGGGC-G--AAAGAATGTTTTCTAGAAAA-A---TAGTACTCGC-GC--AGAAA-GGCTAT-ACGGAGC-ACTAACCGACC-AAACATAGTAATGAAGACCTGGCTAG-CA---GATC-GGGATAGTGGTTA-GGAT-CGGATCGAAACGTTGAGCAAGTTGGAAAAGCGAAATGCTTCAACAGCGCTTCTTATAGTGAAATAAACGTACGACAAAA-C-CA-C-AATTACCAATAAA-TAAAACAAAT--AGTAAATAATCT-CACAAAAAAGGATCCATTGTGCGTCTGAATTAAGACATTAATCTTCCTA-CCACCGAATTGGACA-TCCCGGAAAACTCCAAAGCTAAAGTCCGAAAA-TAC-CAAAGA--GA--ACAGATCG------TCGAA-CTGATA---G-AAATGA-CGACAGCAACCCAAGG---AATTAAGCCGAGTACG-----GTTGAGTC-CAACTC--G-GAATGCAAAT-AGTCGCTCTGATAGTTTATGTATCATCATCCGACA-GATTTTTTAACGAAAC-TTCAATTTGGTGAAACAACCATTACCAGACCCCTTGTATTC---TTTT-GCATT----GGA--TAAAAGCTC-TTACCCCAGTCT--C-T-G-AAAGAACCGCGCGAATGTCATT------GAAAAT-CTTAACA--AACGTCATGAAAAGAAGTAGACCACGGAAATGTGTATTGCGAAA-GATGGATTGCTTGGTCC-T-GAAATTAAT-A--ATTTTTTTCTCACATCCATTTACACAAATCGAT-AAACAC-ACATTCATAGCCGAAAGTACTGCTATC--AT-CGAAACTTGGT--CG-AA--ATGC-TGTG-TTTCATATTGGG---A---GGATGGAAAG-A---C--GCT--TTTTG-AAAAT---CTGCAAAAGC-ACTCCAGTATTTTA-TGGTATC-GA--TAGAT----TGA--GACATTTT-T---GCCAT-CTGA--CGGAA-ATGA--AAAGA-A-CTTAAAATC-ATTTCATA--AAACCGC-GAACTGA------ATTTAACATCCGAATAT-TCAGCT-TGA-CCGTGC-GCCA--------A-CTAAGA-CAATAACGGATTTCC-TGAT---GT--ACGAT-TCAA--AAC---ACGGATTCC-TTTCT--CAGACCTTTATT-GCAT----AC-C-TAC---GTAA-----A------CATA--TACT---------A-TAAAA-CTCTAACTCA--CC-GAACCCAC----------AAGAAAGCGTAT-TCCT-TT--GACT-TCGGTCG-ATCGTGCGGC--GT-AAAA-----GTTACGAC--TGAA---AACACT--CAGT-TTAAAACTG--AA---GA-AAT-------CA-AAA---ATAACTTA----AGAAA--GCGGT---TA-TTAGAT-ATGAT---T--GAAAAAGAA-CTCAT-A-AA-GT--A--T--A-CTCG-ACCGATCAA--CTCCA-TAA-C-ACAGAAAA----GCGAG--AAGCAG-C-TTATCG-TGTTCCCC-TTGTTAGTAA---ACT-A-TC-TAAA--GACTCC-CAAATATTCAT-GAATTAAAAAA-AAAAAAATTCGAA-AAAAAAATCTTGAG
gi|3 : cGAAAACGAAGCTATAAAATCTAACATA------AC-AAAAGAAAAAGAAGTAACCATCTTGTC-TTCCAGGAAAGT----AAA--TAAGCAATTACGCTTAGTTGAG-AAAAGGGTTGAAATTTGTACCGACGATGCAAAATATCGATTTTAATATACTCA---GTTG-TT----------------AACGGA--TTAAAAAACATGAGAACGTAAGA-TACGTCTGTGGGGATATTTTTTTTTTC--GAATAAAGAATCCGAGAAAGAATCATCTTCAAGTAATGATGAA-GGTTACAAATGTGAAAA-TTA-TAAAGATAATTGGAC-ACC-GGAAGAAGGAAGAGACAAATGGATC-ATGAAAAG-AT---TA-GAGTAGTCAAA-GAAGAC-GTAATTAA------GAAAAAGGAATTTTTCTTG-CAATACTTTATTACGCGCGGCAAAGAAAGGGCTATGAAAGAACTAGTGACCGACCAAAACATAGTTAT-TAGACCTG--CAGACAAAGGATCTGGGATAACGATAATGGATTCGGATAAATACGTCGATCAAG-TAGAAAAT-GAAATGCTT--ATAGTGCGTCTTACAGTGAAATAAA-GTACGGCAAAAGC-AAACAAATTACCAATAAAATGAAATAAAA--AGTAAATAATATACATGAAAAAGGACCCATT-T-CTTCTGAATTAAGACATT-AT-TTCCTACCCAGTGAAGTG-ATAGT-CAGGGATACTCCAAGGT--AA-TCC-AAAACTACACAA--AAAGA--ACAATCCGT----TTCGAA-CT-ATATAGGTAAATGGCCGACAACATCCGACGGAAAAATC-AGCCCAGTACCGGTATGTTGAGTAGCAACTCTCGAGAGTGCAAATAG-----------AG-TTATGTA-CAAGATACTACA-GATTTTTAAAAGAAACTTTTAATT--GTAAAGTAACCATTACCAGA-TTCCTCTGTTC-TATTCT-GTA-TATGTGGACGTGAAAGTACTATACCTCAGTATACC-A-GAAAAAAAGCTCGCG-ATATCATTTTTTTTAAAAAGGCAGTACAAGAGCGTCATAAA------TA--------AAA-ATATATTA-GAAATGATGGA-TGCT--GTTCCT-GACA----------------------------TT-----AAT-AAT-AAACACTACATTCAGA-CTGAAGGaagcctgacgcccctcaaaaatgctttcccaaa
gi|3 : ---G---GGAGGGGAAT-AAATC--CTT--TTTTTTTTTAT---TTA-AAAACCTA--CCAGTATTTTA-A-GTA-C-AA--TATAT----TGAT-GACA-TTT-TTTTGGCAT-CTGAACTGGAA-CAGA--AGAACTA-C--AAA--TAAT-----------CCGC-AAA-TGATATACTAGT--ACATCCAAACAG-TCAGGC-TGA-CC-TGC-GACA--------ATACAATATCAAA--TTGATTTCCTTGAT---GT-AACGATCTCAAT-AA-AG-ACGTATTTA-TTTCT-TCTGCTTTATATT-GCAA----AC-C-TAT-CGATAA-----A------CATATGTACCT------TAA-TAAAAGCTCTAAC-TATCCC-GAATCCAC---------AAAAATTGC-TAT-TCCC-TTTGAATT-T-AGTCT-A-ATTGC-GC--GT-AAAATAT--GCT-CCAC--AAAT--GAAAAATGCCAGA-TTCAA--CG--AAAG-TA-AATAATAAAAAA-AAA---AAAACTTA----AGAAAACgaggggaataaatcctttttttttttatttaaaaacctaccagtattttaagtacaatatattgatgacatttttttggcatctgaactggaacagaagaactacaaataatccgcaaatgatatactagtacatccaaacagtcaggctgacctgcgacaatacaatatcaaattgatttccttgatgtaacgatctcaataaagacgtatttatttcttctgctttatattgcaaacctatcgataaacatatgtaccttaataaaagctctaactatcccgaatccacaaaaattgctattccctttgaatttagtctaattgcgcgtaaaatatgctccacaaatgaaaaatgccagattcaacgaaagtaaataataaaaaaaaaaaaacttaagaaaac
gi|4 : gaaaacgaagctataaaatctaacataacaaaagaaaaagaagtaaccatcttgtcttccaggaaagtaaataagcaattacgcttagttgagaaaagggttgaaatttgtaccgacgatgcaaaatatcgattttaatatactcagttgttaacggattaaaaaacatgagaacgtaagatacgtctgtggggatattttttttttcgaataaagaatccgagaaagaatcatcttcaagtaatgatgaaggttacaaatgtgaaaattataaagataattggacaccggaagaaggaagagacaaatggatcatgaaaagattagagtagtcaaagaagacgtaattaagaaaaaggaatttttcttgcaatactttattacgcgcggcaaagaaagggctatgaaagaactagtgaccgaccaaaacatagttattagacctgcagacaaaggatctgggataacgataatggattcggataaatacgtcgatcaagtagaaaatgaaatgcttatagtgcgtcttacagtgaaataaagtacggcaaaagcaaacaaattaccaataaaatgaaataaaaagtaaataatatacatgaaaaaggacccatttcttctgaattaagacattatttcctacccagtgaagtgatagtcagggatactccaaggtaatccaaaactacacaaaaagaacaatccgtttcgaactatataggtaaatggccgacaacatccgacggaaaaatcagcccagtaccggtatgttgagtagcaactctcgagagtgcaaatagagttatgtacaagatactacagatttttaaaagaaacttttaattgtaaagtaaccattaccagattcctctgttctattctgtatatgtggacgtgaaagtactatacctcagtataccagaaaaaaagctcgcgatatcattttttttaaaaaggcagtacaagagcgtcataaataaaaatatattagaaatgatggatgctgttcctgacattaataataaacactacattcagactgaaATTGA-TGCT--GTTCTT-GATAATGAT-A--A------------------------------AT-AAACATTACATTCAGA-CTGAAGGGACCGCTATTGGAT-CAAAACTTG-----------ACGACCGTA--TT-GCAT--GG---GGGTGGGTGGGAGC-AAATCTTCTT--TTTTTTTAAAT---CTG-AAAAGCTA--TC----------------C-GA--TATGT----TGAT-GACA-TTT-T---GGCAT-CTGGATCGGAA-C------------------------------A--AAACCGC-GAA-TAA------AGT--ACATCAGAACAT-TCAGCT-TTC-TC-TACGGCTACAACACATATCTAACA-CCAAAACG
gi|4 : aAAAGCCGGATTTCCTTGAT---AT-AATGATTTTAAT-AACAG-AAGGCTTCCCTTTCT-ACTGACTTTTACT-GCAATAAAACTC-TAA-CGATAA-----AGATACACGTATGTACATGTATCATAA-CAAAAGCTCTATC-CG-TCCAGAATCTAC---------AACAAAC-C-TAC-CCCC-TTTGGACT-T-ATCCT-C-CGTGC-GC--TT-AG---AT--GTT-CTAC--GGAATTTAAAA-TACTAGA-TTCAA--CG--AAAG-GA-ACT------AAAGAGA---AT--CTT-----AGAAAACATGCT---TATTTAGATAATGACG--AAGAAAAAAACC-CTT-TTA-AA-ATACA------------------CAAATCTCCT-AAA-CTACAGGGAA-AATACG----AAGCGG-TATAACTGTTGT--CTT-TTG-TGGTAA---ATT-GTTC-Tcagatcgaaagtgcgaatagatctcaagattgatagttatattatattgtatgtacattttaaaaaagaaagaaagccggatttccttgatataatgattttaataacagaaggcttccctttctactgacttttactgcaataaaactctaacgataaagatacacgtatgtacatgtatcataacaaaagctctatccgtccagaatctacaacaaacctaccccctttggacttatcctccgtgcgcttagatgttctacggaatttaaaatactagattcaacgaaaggaactaaagagaatcttagaaaacatgcttatttagataatgacgaagaaaaaaacccttttaaaatacacaaatctcctaaactacagggaaaatacgaagcggtataactgttgtcttttgtggtaaattgttct
gi|5 : aattgatgctgttcttgataatgataaataaacattacattcagactgaagggaccgctattggatcaaaacttgacgaccgtattgcatgggggtgggtgggagcaaatcttctttttttttaaatctgaaaagctatccgatatgttgatgacattttggcatctggatcggaacaaaaccgcgaataaagtacatcagaacattcagctttctctacggctacaacacatatctaacaccaaaacgcagatcgaaagtgcgaatagatctcaagattgatagttatattatattgtatgtacattttaaaaaagaaagAA-TCC-AAAAATACACAA--A--GAGAACAATCCGTGCGTTTCGAA-CT-ATA---GTAAATG-CCAACAGCACCCGACGGAAAAATT-AGCCGAGTAC------GTTGAGTCACAACTC--GAGAAAGCAAATA-GTCGCT-TGATAG-TTATGTA-CAAGATACGACATAATTTTTT-AAGAAACTTTCAATT--GTGAAACAACCATTACCAGA-CCCTTGTATTCTT-TTTT-GCA-T----GGATGTGAAAGCTCTTTACCCCAGTATACCTT-GAAAAGAAGCGTGCG-ATGTCATT------AAAAATGCTTTACAAGAACGTCATGAAAAGAAGTAGA-CACGGAAA-GTGTA-TA-GAAATGATGGA-TGAT--GT-CTT-GATAATAATAA--ATTTTAGT----------TTT-----AAT-GAT-AAACACTA-ATTCAGA-CCGAAGGTACCGCTATCGGAT-CGAAACTTGGT--CATAACTACGCTTGTG-TTT-ATAT--GG---G---GGATGGGA---AAATC--C-T--TTTTGAAAAAT---CTG--AAAGCTA--CCAA-ATTTTA-T-GTA-C-GG--TATAT----TGAT-GACA-TTT-T---GGCAT-CTGGA-CGGAA-CAGA--AGAAT-A---TAAA--CAATTTCATA--AAACCGC-GAA---G------AAT--ACATCCGAATAT-
gi|6 : -TCAGCT-TGA-C--TGC-GCCA--------ATCTAATA-CAAAA-CGGATT-CCTTGAT---GT-AACGATG-CAAT-AACAG-ACGGATTCC-TTTCT-ACAGACTTGTATT-G-AA----AC-C-TAC-CGACAA-----A------CAT--GCACCT------TGA-TAAAA-CTCTAAC-CACCCC-GAATCCAC---------AAAAAAAGC-TAT-TCCC-TTTGAA-T-T-GGTCT-G-CGTGC-GC--GT-AGAATAT--GTT-CAAC--AGAA--GAAAACTATCAGA-TTCAA--CG--AAA--GA-AAT-------AA-AAA---ATAACTT-----AGAAAA-GCGGG---TA-TTAGATAATGATA--TAG--AAAAGAACCTCATCA-AA-GTAGA--TAAA-CTCG-A-CGATCAAATCTCCTAAAA-CTACA-AAAA-AAGACG----AAGCAG-TATAATCG-TGTTCCCC-TTG-TAGTAA---ACT-ATTC-TAA---GACTTC-C-CATATTCATAAATTTAAAAAA-TA---------AC-AAAAAATTTCTGAG
gi|7 : -TGCT--GTCATTCGATAATAAT-ATAATTATAGT----------TTA-----AAT-GATTGAACACTACATTCAG--CC-AAGGTACCG-TA-CGGATGCGAAACTTGGTGCCGTAA-TACGCTTGTGGTTT-TTAT--GGCAGG---GGATGG--AG-AAATC---TT--TTTTGAAAAAT---CTG-AAA-GCGT--TCAGTATTTAC-T-G-A-C-GAAGTATAT-----GATTGACA-TTT-T---TG-ATACTG-ACCGGAAACAGAGAAGAAG-A--TTAAA--CAATTTCATACAAAACCGCCGAA-TGA------AAT--A-ATCCCGATATATCAGAT-TGA-CCATGC-GCCA---------TCTAATA-CAAAAACGGATTC---TGAT---GTTCACGAGCTCAAT-AAAGA-ACGGATCC---TTCT-A--AGCTTGTATTTGCAA----AC-CATACGCGATAA------------CATATGTACCT------TAAATAAAACTTCTAAC-CA-CCC-GAATCCAC---------AAAAaactctgaccgctcaaaatgcttccaa
gi|8 : ACTT-TATT-GGAGC---GC-C-TAC---ATAA-----T------TATAT--------------A-TAAAAGCTCGAAC-CA-CGG-AGATCCATCTCAAAAAAAAAAAAAAC-TAT-TCCCCTTTGGACTAT-GGTCTTA-CGTGC-GT--GTTATAATATTCGTT-CAACTTA-AA--GAAAA-TACCAAA-TTAAA------AAAA-AACAAC------AAC-AAC---A-AACGTATAGTAGAACAC-CGGTGAATAT---GATAATGAGAAATAGAAAAAGAAA-CTCATCATAATGTAGAACTGAATCTCGGACTGATCTAATCTCCA-AAAGCTAT-GAAAA-AAGACG----AAGCAGATAGAATCG-TGTTCCCCATTG-T--TACGTTACTAATTCTTAAAGAAATTTC-C-AATA-TCATAAA--TAAAAAA-
gi|9 : -ATA---GG---G---GGATCGGAACCAAAAC--ATTATTTTTGAAAAAAAAACTT-AAAAGCTA--C--ATATGTTACT-GTA-CCGA--TACATGTAATGAA-GACG-TTT-TTG-GAAAT-CTGGATCAGAA-CAGA--AGAAC---CTTAAAA-CAATT-----------------------------AT--ACATTC-----------CTATGAACC-TG-----A--------AC--AATAACCAAAACAGAGCTCCT-GAT---GT-AAAAAACTCAATTAACGGCGCGCATTCT-CTTCTCACTGATTAATATT-GCAA----CG-C-TACTCGATAATATATG------CACATGTACCT------T-A-T-AAAGCTCTGAT-TC-CCT-GAA-CCAC---------CAAAGAA---TACATCCC-TTT
blockSeqs : C . . T CCATG C A G CT C A T AA T C A A T C A G C TTCGTGCATGGTTTTTTTTGGGGGGGGGGGC . T C T T T TTTTC T A ACTATC TT AAG T A GTGAAAA TG T T A CGG A G T G ACA T G AA C T A A AT A A TACTT T G A G G T A G GC A AA T T T T T C TC C C G AAA A A C . A A GTG A C C C GACATC GCT G G C A AGA GA TGCGT . G TAG T GC A A CGGTAT A TC AA C T T C T TA T TG C TA . TATGT C T A TT A A TTTTTT G A A G C T T C T T TG C C C T AATTTTTTTCTCACATCCATTTACACA C T G G GCCGTAAT T C GT C TG GGGT ACC TTCT AT T AAA C T CT A TG T C AG GTAA TT T A TTT A C A GA AACTTAAAATCATTTCATA C TGATATACT TA C G A A A G G CAACACAT T TTT T T GGC CC C T A T TAAA T A G ATATATG GTATCATA A G T T C CTCAAAAAAA AC G A C A C AT G AA T TC A TT TTT C AG . AC GA GA C AATAAAA G CGGA ATAGT ACG GAA T AAA A C A T T ACTG T G G A G C ATCG A A T A T G GTT A T GA A A A G AAAAAT .
blockSeqs : . . . . . . . G . . T C . . . T T G T ATATACTCAGTTGTTAAC . A C T . A CAA . A ATCATC AA AA A A AAAA T T T . CC A G G . . . T AA G . . A GC A . A G . . . . . . . . . . . A . . . . T T . . CA . . T . . G T . . C . ATAGT GT . . A A AAA . T . . . T A C . G G . AG . . . G . AA T . . TT . TT T T A T A . . G A A G . . T . T . . T T . A ATAATTATAGTTTA . . . . CATAACT C T T . . CAGG AG GC . T . . T . A CT . . . . T . . TG . C . . GATTAAACAATTTCATACA . CTGA . C G . . . A . . A . . . AT C . T A . C . . T AGATACA TA . G . C T A AG . . . . . TA . . . . . . G C GC . . . G . A . AC A ACA . T G A . C . . TA . . C A . . AG . A . . . A . . . G . . A . A .
blockSeqs : . . . . . . A G T A CCATTGATTAA . . . . . . C . . . GT AG T . TG A . . . . . . . . . . A . . . . . . . . . . . A . . . . . . C G . . A . A . . . G . T . . . . . T . . . A . . . . . . . . . . . . . . T T . A AAATTTTAGTTTT . . . . CGAA C T T . . A AT CT . A . . T . A T . . . . T . . . . T . . TATAAACAATTTCATA . TGC . C A . . . . . . . . . . GG C . A T . . . . . TATATG TA . G . . A A TG . . . . . A . . . . . . G A AC . . . G . G . AT A AG . T A A . C . . TA . . C . . . A . A . . . A . . . G . . A . A .
blockSeqs : G . . . . A . . C T . A TT . . . . . C . . . . G GC AT . A . . G . A A . . . . T . . . . C . . CCTTAAAACAATT . TAA . C G . . . . . . . . . . AG C . T A . . . . . A TG . G . . . A AG . . . . . A . . . . . . G C AT . . . G . A . AA G AC . T A A . T . . TA . . C . . . . . A . . . G . . . . . . T . .
blockSeqs : . . . . . . AA . . . . . G AG C . A . . T . . T . . . . T . . . . T . . CTACAAATAAT . TGA . C G . . . . . . . . . . AG A . T T . . . . . A TA . C . . . A AA . . . . . C . . . . . . G . AC . . . A . A . AT A G . . G A . C . . T . . . . . . . . . . . . A . . . . . . . .
blockSeqs : G . T . . . . . . . T . . . . A . . . . . . . CTTAAACAA . G . . C . . . . . . . . . . AG C . A G . . . . . A T . G . . . A C . . . . . G . . . . . . . . . . . . . . . . AT A . . . A . . C . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . A . . . . . . . . . . . . . . . GA T . T G . . . . . A . . G . . . C A . . . . . . . . . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . A . . . . . T . . . . . . . . . . . . A .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqCons : AATTTTTTT********************* CGAA***** ACG A*** G*
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACTTTACCCCNTGAAGAAAAAGAGTTAGAAAACGAAACTATAGAATCTAACATAC-ATG-ACCAAAAGAAAAGGAGGTAATCATCCTGTC-ATCCAAGAAAGTTAACAAC--TGAGCAATTAAGCTT-GTTG-G-ANAAGGNCTGAAATNTGTACCGACANAGCAAAATATTGATTTTA-----CTCG---ATTG-TT----------------AA-GGA--TTAAAAAACATGGGAACGTAGGA-TGCGTCTGCGGGAATATTTTTT----C--GAA-AAAGAATCCGAGAATGAACCATCCTCAAGNAATGACGAA-GGTNACAAATGTGAAAA-TTT-TAAAGGTAATTGGAC-ACC-G-AAGAAGGAAGAGACAAATGGCTCGATGAATAC-AT---TA-GACAAGTCAAA-GAAGAC-TTA-TTAGAGGGC-GAAAAAGAATTTTTTCTAG-AAA-A---TATTACGCGCGGCGAAGAAAGGGCTATGAAGGAGCTACTAACCGACCAAAACATAGTAAT-AAGACCTG--CAGACAAGGGATCTGGGATAGCGGTNATGGAT-CGGATAAATACGTCGATCGAG-TGGAAAAG-GAAATGCTTCAANAGCGCTTCTTATAGTGAAATAAA-GTACGACAAAAGC-AA-CAAATTACCAATAAA-TAAAANAAAT--AGTAAATAATATGCACGAAAAAGGATCCATT-T-CGTCTGAATTAAGACATT-ATCTTCCTACCCACCGAAGTGGACA-T-CCGGAAAACTCCAAGGCTAAA-TCC-AAAA-TACACAA--A--GA--ACAATCCGT----TTCGAA-CT-ATA---GTAAATGGCCGACAGCACCCGACGGAAAAATT-AGCCGAGTAC------GTTGAGTCACAACTC--GAGAATGCAAATAAGTCGCT-TGATAG-TTATGTA-CAAGATACGACA-GATTTTTNAAAGAAACTTTCAATT--GTGAAACAACCATTACCAGA-CCCTTGTATTC-T-TTTT-GCA-T----GGACGTGAAAGCTCTTTACCCCAGTATACC-T-GAAAAGAAGCGCGCG-ATGTCATT------AAAAATGCTTTACAAGAACGTCATGAAAAGAAGTAGA-CACGGAAA-GTGTATTA-GAAATGATGGA-TGCT--GTCCTT-GATAATAAT-A--ATTTTAGT----------TTT-----AAT-GAT-AAACACTACATTCAGA-CCGAAGGTACCGCTATCGGAT-CGAAACTTGGT--CGTAACTACGCTTGTG-TTT-ATAT--GG---G---GGATGGGAAN-AAATC--CTT--TTTTGAAAAAT---CTG-AAAAGCTA--CCAGTATTTTA-T-GTA-C-GA--TATAT----TGAT-GACA-TTT-T---GGCAT-CTGGACCGGAA-CAGA--AGAAN-A-CTTAAA--CAATTTCATA--AAACCGC-GAA-TGA------AAT--ACATCCGAATAT-TCAGCT-TGA-CC-TGC-GCCA--------ATCTAATA-CAAAAACGGATTTCCTTGAT---GT-AACGATCTCAAT-AACGG-ACGGATTCC-TTTCT-ACTGACTTGTATT-GCAA----AC-C-TAC-CGATAA-----A------CATATGTACCT------TAA-TAAAAGCTCTAAC-CA-CCC-GAATCCAC---------AAAAAAAGC-TAT-TCCC-TTTGGACT-T-GGTCT-A-CGTGC-GC--GT-AGAATAT--GTT-CAAC--AGAA--GAAAACTACCAGA-TTCAA--CG--AAAG-GA-AAT------AAA-AAA---ATAACTTA----AGAAAACGCGGT---TATTTAGATAATGATA--TAGAAAAAAGAA-CTCATCA-AA-GTAGA--TAAA-CTCG-ACCGATCAAATCTCCT-AAA-CTACAGAAAA-AAGACGA---AAGCAG-TATAATCG-TGTTCCCC-TTG-TAGTAA---ACT-ATTC-TAAAG-GACTTC-C-AATATTCATAAAATTAAAAAA-AAA-----TCGAC-AAAAAATTCTTGAG
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACTTTACCCCNTGAAGAAAAAGAGTTAGAAAACGAAACTATAGAATCTAACATAC-ATG-ACCAAAAGAAAAGGAGGTAATCATCCTGTC-ATCCAAGAAAGTTAACAAC--TGAGCAATTAAGCTT-GTTG-G-ANAAGGNCTGAAATNTGTACCGACANAGCAAAATATTGATTTTA-----CTCG---ATTG-TT----------------AA-GGA--TTAAAAAACATGGGAACGTAGGA-TGCGTCTGCGGGAATATTTTTT----C--GAA-AAAGAATCCGAGAATGAACCATCCTCAAGNAATGACGAA-GGTNACAAATGTGAAAA-TTT-TAAAGGTAATTGGAC-ACC-G-AAGAAGGAAGAGACAAATGGCTCGATGAATAC-AT---TA-GACAAGTCAAA-GAAGAC-TTA-TTAGAGGGC-GAAAAAGAATTTTTTCTAG-AAA-A---TATTACGCGCGGCGAAGAAAGGGCTATGAAGGAGCTACTAACCGACCAAAACATAGTAAT-AAGACCTG--CAGACAAGGGATCTGGGATAGCGGTNATGGAT-CGGATAAATACGTCGATCGAG-TGGAAAAG-GAAATGCTTCAANAGCGCTTCTTATAGTGAAATAAA-GTACGACAAAAGC-AA-CAAATTACCAATAAA-TAAAANAAAT--AGTAAATAATATGCACGAAAAAGGATCCATT-T-CGTCTGAATTAAGACATT-ATCTTCCTACCCACCGAAGTGGACA-T-CCGGAAAACTCCAAGGCTAAA-TCC-AAAA-TACACAA--A--GA--ACAATCCGT----TTCGAA-CT-ATA---GTAAATGGCCGACAGCACCCGACGGAAAAATT-AGCCGAGTAC------GTTGAGTCACAACTC--GAGAATGCAAATAAGTCGCT-TGATAG-TTATGTA-CAAGATACGACA-GATTTTTNAAAGAAACTTTCAATT--GTGAAACAACCATTACCAGA-CCCTTGTATTC-T-TTTT-GCA-T----GGACGTGAAAGCTCTTTACCCCAGTATACC-T-GAAAAGAAGCGCGCG-ATGTCATT------AAAAATGCTTTACAAGAACGTCATGAAAAGAAGTAGA-CACGGAAA-GTGTATTA-GAAATGATGGA-TGCT--GTCCTT-GATAATAATAATTTTTTT---------------------AAT-GAT-AAACACTACATTCAGA-CCGAAGGTACCGCTATCGGAT-CGAAACTTGGTCGAA-----ACGCTTGTG-TTT-ATAT--GG---G---GGATGGGAAN-AAATC--CTT--TTTTGAAAAAT---CTG-AAAAGCTA--CCAGTATTTTA-T-GTA-C-GA--TATAT----TGAT-GACA-TTT-T---GGCAT-CTGGACCGGAA-CAGA--AGAAN-A-CTTAAA--CAATTTCATA--AAACCGC-GAA-TGA------AAT--ACATCCGAATAT-TCAGCT-TGA-CC-TGC-GCCA--------ATCTAATA-CAAAAACGGATTTCCTTGAT---GT-AACGATCTCAAT-AACGG-ACGGATTCC-TTTCT-ACTGACTTGTATT-GCAA----AC-C-TAC-CGATAA-----A------CATATGTACCT------TAA-TAAAAGCTCTAAC-CA-CCC-GAATCCAC---------AAAAAAAGC-TAT-TCCC-TTTGGACT-T-GGTCT-A-CGTGC-GC--GT-AGAATAT--GTT-CAAC--AGAA--GAAAACTACCAGA-TTCAA--CG--AAAG-GA-AAT------AAA-AAA---ATAACTTA----AGAAAACGCGGT---TATTTAGATAATGATA--TAGAAAAAAGAA-CTCATCA-AA-GTAGA--TAAA-CTCG-ACCGATCAAATCTCCT-AAA-CTACAGAAAA-AAGACGA---AAGCAG-TATAATCG-TGTTCCCC-TTG-TAGTAA---ACT-ATTC-TAAAG-GACTTC-C-AATATTCATAAAATTAAAAAA-AAA-----TCGAC-AAAAAATTCTTGAG
Alignments
lowQualScore : 1 1 222222 11 1 1 11 1 1 2 77777777777777777777777777777777777777 11 1 2222222 1 333333 1 222 1 11 1 2222 1 111 1 111 2 1 111 1 44444 1 1 11 11 2 1 1 11 1 1111 1 11 1 1 111 1 1111111 1 1 2 11111 11 22222 1 1 111 333333 11 1 1 1 1 11 1 222 1 222222 1 111 1 222222 1 1 1 888888888888888888888888888888888888 333333333 11 1111111 1111 111 1111 111 333333333333333333333333 1111111111 11111111 1111 333333333333 11111111 1 1111111111 11 1111111 11111 11111 111 1 2222 111 222222 1
lowQualScore : 1 5 5 7 999999 6 7 6 00 3 2 7 33 3 8 0 0 0 1 1 1 0 1 66666666666666666666666666666666666666 33 9 2 9 0 0 9 5555555 0 3 777777 11 0 33 1 3 222 0 11 3 3 0 5555 3 2 8 0 777 0 1 000 8 0 0 3 000 3 3 44444 3 6 2 6 6 7 7 3 88 7 11 7 0 1 7 6 0 0 3 3 44 1 3 6 6666 7 3 1 88 2 2 777 3 6 6 6 8888888 999 0 0 0 3 88888 33 44444 0 0 777 3 99 1 0 8 111111 3 11 0 44 0 0 0 8 0 44 3 33 0 333 0 222222 0 3 3 777 3 0 888888 2 3 3 0 2 0 0 3 0 3 6 99 3 1 6 3 111111111111111111111111111111111111 888 6 6 0 8 666666666 11 3 88 6 99 2222222 888 2222 77 5 000 5 1 77 1 0 777 0 5 5 66 0000 55 5 5 555 5 0 3 5 0 66 444444444444444444444444 5 6666666666 66 2 2 4 4 4 8 4 66666666 0 8 0 0 777 4 0 4 666 44 4 2 6 4 2222 4 4 8 333333333333 0 66666666 4 4 4 8 2 9999999999 00 4 4 4 5 5 888 5 66 5 0 66 5 0 77 888 7 11 5 66 66 99 5 9999999 4 00000 33333 888 000 5 777 3 0 5 1 5 5 8888 5 5 4 0 1 5 00 5 7777 0 5 1 5 5 5 2 000 5 5 99 6 6 3 6 000000 0
lowQualScore : . . . . ...... . . . .. . . . .. . . . . . . . . . . ...................................... .. . . . . . . ....... . . ...... .. . .. . . ... . .. . . . .... . . . . ... . . ... . . . . ... . . ..... . . . . . . . . .. . .. . . . . . . . . . .. . . . .... . . . .. . . ... . . . . ....... ... . . . . ..... .. ..... . . ... . .. . . . ...... . .. . .. . . . . . .. . .. . ... . ...... . . . ... . . ...... . . . . . . . . . . . .. . . . . .................................... ... . . . . ......... .. . .. . .. ....... ... .... .. . ... . . .. . . ... . . . .. .... .. . . ... . . . . . .. ........................ . .......... .. . . . . . . . ........ . . . . ... . . . ... .. . . . . .... . . . ............ . ........ . . . . . .......... .. . . . . . ... . .. . . .. . . .. ... . .. . .. .. .. . ....... . ..... ..... ... ... . ... . . . . . . .... . . . . . . .. . .... . . . . . . . ... . . .. . . . . ...... .
lowQualScore : 0 0 5 3 777777 7 3 7 33 3 0 3 88 2 8 0 0 0 0 0 0 2 0 88888888888888888888888888888888888888 88 8 5 2 0 2 8 0000000 0 2 000000 22 0 55 0 2 222 0 22 2 2 0 0000 2 5 8 0 555 0 2 222 8 0 0 2 555 2 3 00000 7 7 0 7 7 3 3 3 33 3 00 3 7 0 3 7 7 7 3 3 00 0 3 7 7777 3 3 0 33 0 0 777 3 7 7 7 0000000 333 0 0 0 2 55555 88 55555 0 0 555 2 00 4 8 0 000000 8 00 8 66 0 0 0 8 0 22 2 88 0 222 0 222222 5 2 2 555 2 0 888888 5 2 2 2 5 0 0 2 0 2 7 22 7 7 7 5 000000000000000000000000000000000000 333 7 7 8 0 000000000 00 8 88 7 22 3333333 999 3333 99 4 000 7 4 99 4 1 222 1 0 0 99 6666 44 0 0 666 0 2 4 0 4 99 444444444444444444444444 0 6666666666 99 5 9 0 4 4 9 4 11111111 8 9 6 7 888 4 1 4 222 66 4 3 4 0 5555 0 0 0 000000000000 7 88888888 0 1 0 0 0 2222222222 44 4 4 4 7 7 000 0 99 0 1 99 0 3 99 666 9 99 7 99 99 55 0 5555555 4 77777 00000 888 000 0 888 2 2 0 4 0 0 4444 7 7 3 6 4 7 99 7 7777 1 7 4 7 7 7 3 000 7 7 22 7 7 5 7 888888 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACTTTACCCCNTGAAGAAAAAGAGTTAGAAAACGAAACTATAGAATCTAACATAC-ATG-ACCAAAAGAAAAGGAGGTAATCATCCTGTC-ATCCAAGAAAGTTAACAAC--TGAGCAATTAAGCTT-GTTG-G-ANAAGGNCTGAAATNTGTACCGACANAGCAAAATATTGATTTTA-----CTCG---ATTG-TT----------------AA-GGA--TTAAAAAACATGGGAACGTAGGA-TGCGTCTGCGGGAATATTTTTT----C--GAA-AAAGAATCCGAGAATGAACCATCCTCAAGNAATGACG-AAGGTNACAAATGTGAAAA-TTT-TAAAGGTAATTGGAC-ACC-G-AAGAAGGAAGAGACAAATGGCTCGATGAATAC-AT---TA-GACAAGTCAAA-GAAGAC-TTA-TTAGAGGGC-GAAAAAGAATTTTTTCTAG-AAA-A---TATTACGCGCGGCGAAGAAAGGGCTATGAAGGAGCTACTAACCGACCAAAACATAGTAAT-AAGACCTG--CAGACAAGGGATCTGGGATAGCGGTNATGGAT-CGGATAAATACGTCGATCGAG-TGGAAAAG-GAAATGCTTCAANAGCGCTTCTTATAGTGAAATAAA-GTACGACAAAAGC-AA-CAAATTACCAATAAA-TAAAANAAAT--AGTAAATAATATGCACGAAAAAGGATCCATT-T-CGTCTGAATTAAGACATT-ATCTTCCTACCCACCGAAGTGGACA-T-CCGGAAAACTCCAAGGCTAAA-TCC-AAAA-TACACAA--A--GA--ACAATCCGT----TTCGAA-CT-ATA---GTAAATGGCCGACAGCACCCGACGGAAAAATT-AGCCGAGTAC------GTTGAGTCACAACTC--GAGAATGCAAATAAGTCGCT-TGATAG-TTATGTA-CAAGATACGACA-GATTTTTNAAAGAAACTTTCAATT--GTGAAACAACCATTACCAGA-CCCTTGTATTC-T-TTTT-GCA-T----GGACGTGAAAGCTCTTTACCCCAGTATACC-T-GAAAAGAAGCGCGCG-ATGTCATT------AAAAATGCTTTACAAGAACGTCATGAAAAGAAGTAGA-CACGGAAA-GTGTATTA-GAAATGATGGA-TGCT--GTCCTT-GATAATAAT-A--ATTT---T---TTT------------------AA-T-GAT-AAACACTACATTCAGA-CCGAAGGTACCGCTATCGGAT-CGAAACTTGGT--CGTAA--AC--GCTTGTG-TTT-ATAT--GG---G---GGATGGGAAN-AAATC--CTT--TTTTGAAAAAT---CTG-AAAAGCTA--CCAGTATTTTA-T-GTA-C-GA--TATAT----TGAT-GACA-TTT-T---GGCAT-CTGGACCGGAA-CAGA--AGAAN-A-CTTAAA--CAATTTCATA--AAACCGC-GAA-TGA------AAT--ACATCCGAATAT-TCAGCT-TGA-CC-TGC-GCCA--------ATCTAATA-CAAAAACGGATTTCCTTGAT---GT-AACGATCTCAAT-AACGG-ACGGATTCC-TTTCT-ACTGACTTGTATT-GCAA----AC-C-TAC-CGATAA-----A------CATATGTACCT------TAA-TAAAAGCTCTAAC-CA-CCC-GAATCCAC---------AAAAAAAGC-TAT-TCCC-TTTGGACT-T-GGTCT-A-CGTGC-GC--GT-AGAATAT--GTT-CAAC--AGAA--GAAAACTACCAGA-TTCAA--CG--AAAG-GA-AAT------AAA-AAA---ATAACTTA----AGAAAACGCGGT---TATTTAGATAATGATA--TAGAAAAAAGAA-CTCATCA-AA-GTAGA--TAAA-CTCG-ACCGATCAAATCTCCT-AAA-CTACAGAAAA-AAGACGA---AAGCAG-TATAATCG-TGTTCCCC-TTG-TAGTAA---ACT-ATTC-TAAAG-GACTTC-C-AATATTCATAAAATTAAAAAA-AAA-----TCGAC-AAAAAATTCTTGAG
Reference ( family-5727 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACTTTACCCCNTGAAGAAAAAGAGTTAGAAAACGAAACTATAGAATCTAACATAC-ATG-ACCAAAAGAAAAGGAGGTAATCATCCTGTC-ATCCAAGAAAGTTAACAAC--TGAGCAATTAAGCTT-GTTG-G-ANAAGGNCTGAAATNTGTACCGACANAGCAAAATATTGATTTTA-----CTCG---ATTG-TT----------------AA-GGA--TTAAAAAACATGGGAACGTAGGA-TGCGTCTGCGGGAATATTTTTT----C--GAA-AAAGAATCCGAGAATGAACCATCCTCAAGNAATGACG-AAGGTNACAAATGTGAAAA-TTT-TAAAGGTAATTGGAC-ACC-G-AAGAAGGAAGAGACAAATGGCTCGATGAATAC-AT---TA-GACAAGTCAAA-GAAGAC-TTA-TTAGAGGGC-GAAAAAGAATTTTTTCTAG-AAA-A---TATTACGCGCGGCGAAGAAAGGGCTATGAAGGAGCTACTAACCGACCAAAACATAGTAAT-AAGACCTG--CAGACAAGGGATCTGGGATAGCGGTNATGGAT-CGGATAAATACGTCGATCGAG-TGGAAAAG-GAAATGCTTCAANAGCGCTTCTTATAGTGAAATAAA-GTACGACAAAAGC-AA-CAAATTACCAATAAA-TAAAANAAAT--AGTAAATAATATGCACGAAAAAGGATCCATT-T-CGTCTGAATTAAGACATT-ATCTTCCTACCCACCGAAGTGGACA-T-CCGGAAAACTCCAAGGCTAAA-TCC-AAAA-TACACAA--A--GA--ACAATCCGT----TTCGAA-CT-ATA---GTAAATGGCCGACAGCACCCGACGGAAAAATT-AGCCGAGTAC------GTTGAGTCACAACTC--GAGAATGCAAATAAGTCGCT-TGATAG-TTATGTA-CAAGATACGACA-GATTTTTNAAAGAAACTTTCAATT--GTGAAACAACCATTACCAGA-CCCTTGTATTC-T-TTTT-GCA-T----GGACGTGAAAGCTCTTTACCCCAGTATACC-T-GAAAAGAAGCGCGCG-ATGTCATT------AAAAATGCTTTACAAGAACGTCATGAAAAGAAGTAGA-CACGGAAA-GTGTATTA-GAAATGATGGA-TGCT--GTCCTT-GATAATAAT-A--ATTT---T---TTT------------------AA-T-GAT-AAACACTACATTCAGA-CCGAAGGTACCGCTATCGGAT-CGAAACTTGGT--CG-AA--AC--GCTTGTG-TTT-ATAT--GG---G---GGATGGGAAN-AAATC--CTT--TTTTGAAAAAT---CTG-AAAAGCTA--CCAGTATTTTA-T-GTA-C-GA--TATAT----TGAT-GACA-TTT-T---GGCAT-CTGGACCGGAA-CAGA--AGAAN-A-CTTAAA--CAATTTCATA--AAACCGC-GAA-TGA------AAT--ACATCCGAATAT-TCAGCT-TGA-CC-TGC-GCCA--------ATCTAATA-CAAAAACGGATTTCCTTGAT---GT-AACGATCTCAAT-AACGG-ACGGATTCC-TTTCT-ACTGACTTGTATT-GCAA----AC-C-TAC-CGATAA-----A------CATATGTACCT------TAA-TAAAAGCTCTAAC-CA-CCC-GAATCCAC---------AAAAAAAGC-TAT-TCCC-TTTGGACT-T-GGTCT-A-CGTGC-GC--GT-AGAATAT--GTT-CAAC--AGAA--GAAAACTACCAGA-TTCAA--CG--AAAG-GA-AAT------AAA-AAA---ATAACTTA----AGAAAACGCGGT---TATTTAGATAATGATA--TAGAAAAAAGAA-CTCATCA-AA-GTAGA--TAAA-CTCG-ACCGATCAAATCTCCT-AAA-CTACAGAAAA-AAGACGA---AAGCAG-TATAATCG-TGTTCCCC-TTG-TAGTAA---ACT-ATTC-TAAAG-GACTTC-C-AATATTCATAAAATTAAAAAA-AAA-----TCGAC-AAAAAATTCTTGAG
gi|1 : AACACTTTACCCCATGAAGAAAAAGAGTTAGAAAACGAAACTATAGAATCTAACATAC-ATGTACCAAAAGAAAAGGAGGTAATCAACCTGTC-ATCAAAGAAA-TTAACAAC--TGAGCAATTAAGGTT-GTTG-GGAAAAGGTCTGAAATTTGTACCGACAAAACAAAATATTGATTTTA-----CTCA---ATTG-TG----------------AA-GGGATTTAAAAAACATGGAAACGGAGGA-TGCGTCTGCGGGAATATTTTTT----C--GAA-AAAGAATCCGAGATTGA------CTCAAGAAATGACG-A--GTAACAAATATAAAAAATTC-TAAAGGTAATTGGAC-ACCCG-AAGAAGGAAGAGACAAATGGCTCGATGAATAC-AT---TA-GACAAGTTAAAAGAAGACGTTA-TTAGAGGGCTGAAAAAGAATTTTTTCTAG-AAA-----TATTACACGCGGTGAAGAAAGGGCTATGAAGGAGCTACTAACCGACCAAAACATAGTAAT-AAGACCTG--CAGACAAGGGATCTGGGATAGTGGTCATGGATGCGGATAAATACGTTGATCGAG-TGGAAAAG-GAAATGCT-CAAAAGCGCTTCTTATAGTGAAATAAA-ATACGACAAAAGCCAA-CAAATTACCAAATAA-TAAAAAAAATTTAGTAAATAATATGCAC-AAAAAGGATCCATT-T-CGTCTGAATTAAGACATT-ATCTTC-TACCCACCGAAGTGG-CA-T-CCGGAAAACTCCAAG-CTAAA-TCC-AAAA-TACACAA--A--GG--ACAATCCGT----TTCGAAACT-ATA---GTAAATGGCCGACAGCACCCAACGGAAAAATT-AGCCGAGTAC------GTTGAGTCACAACTC--GAGAATGCAAATAAGTCGCT-TGATAG-TTATGTA-CAA-ATACGACA-GAATTTTGAAAGAAACTTTCAATT--GTGAAACAACCATTACCAGA-CCCTTGTATTC-T-TTTTTGCA-T----GGATGTGAAAGCTCTTTACCCCAGTATACC-TAGAAAAGAAGCGCGCG-ATGTCATT------AAAAATGCTTTACAAGAACGTCATGAAAAAAAGTAGA-CACGGAAA-GTGTATTA-GAAATGATGGA-TGCT--GTCCTT-GATAATAAT-A--ATTT---TAGTTTT------------------AA-T-GAT-AAACACTACATTCAGA-CCGAAGGTACCGCTATCGGAT-CGAAACTTGGT--CG-TA--ACTAGCTTGTG-TTT-ATAT--GG---G---GGATGGGAAA-AAATC--CTT--TTTTGAAAAAT---CTG-AAAAGCTA--CCAGTATTTTA-T-GTA-C-GG--TATAT----TGAT-GACA-TTT-T---GGCAT-CTGGACCGGAA-CAGA--AGAAG-AACTTAAA--CAATTTCATA--AAACCGC-GAA-TGA------AAT--ACATCCGAATAT-TCAGCT-TGA-CC-TGC-GCCA--------ATCTAATA-CAAAAACGGATTTCCTTGAT---GT-AACGATCTCAAT-AACAG-ACGGATTCC-TTTCT-ACAGACTTGTATT-GCAA----AC-C-TAC-CGATAA-----A------CATATGTACCT------TAA-TAAAAACTCTAAC-CA-CCC-GAATCC-C---------AAAAAAAGC-TAT-TCCC-TTTGGACT-T-GGTCT-A-CGTGC-GC--GT-AGAATAT--GTT-CAAC--AGAA--GAAAACTATCAGAATTCAA--CG--AAAT-AA-AAT------AAA-AAA---ATAACTTA----AGAAAACGCGGT---TATTTAGATAATGATA--TAGAAAAAAGAA-CTCATCA-AA-GTAGA--TAAA-CTCG-ACCGATCAAATCTCCT-AAA-CTACAGAAAA-AAGACGA---AAGCAG-TATAATCG-TGTTCCCC-TTG-TAGTAA---ACT-ATTC-TAAAG-GACTTC-C-AATATTCATAAAATTTTAAAA-AAA-----TCGACAAAAAAATTCTTGAG
gi|10 : ccaacaaatgtttaattcaaccgataca--TGAGGAATTAAACTT-GTTG-GTACAAGTATTGAAATGTATACCCAAACAGCAAAACATTGAATTTA-----TTCGTGCATGG-TTTTTTTTGGGGGGGGGGGC-GGA--TTTAAAAACATGGAAA-GTTAGA-TGCGTTTGGGGGAATTTTTTTT----C--AAA-AAAGACTACAAAAATGAACTATCTTCAATTAATGGTGAAAGGTTGC--ATG--------TT-TAAAAA-AAT----C-AT----AAGAATGAAGAGACAAATGGCTCGATTAATACGATACATATGGCAAGTCA----TACACTTTA-TCTGAGGAT-TAAGAAG
gi|11 : TATCTTA-T-GTA-C-AA--TAATT----TGAT-GACA-TTTAT---TGCAT-ATAGACCGCCA-CAGA--GGAA----CTTAAA--CAA-----------ACT----AA-TGC------AAT--A---------------GCC-TAA-AC-TGC-AACC--------ATCTAG------GAA--GATTTTATT-ATTTTGT-AACGATCTCAAT-AACAT-ACGGATTCC-TTTAT-ACTGATTTATGTT-GTAT-----C-A-TAC-CGATAA-----A------C--------CT-------------AAGC---AAC-CA-CCCCGAATCCAC----------ATAAAACC-TAT-TCTT-TTT
gi|12 : TCAG--CG--AAAG-AA-AAT------AAA-GAA----TAATTTA----AGGAA---C--------TTGAGATAATGATG--TAGAAGGAA-AA-TTTATAA-AA-GTAGA--TAAA-CTCG-AGCAATCGAATTTCGT-AAA-CTA-ATAAAACAAAACAATCGAAGC---------CG-TGTTCATT-TTG-TGGTAA---ACT-ATTC-TAAAG-CATTTCAC-AATATTCACAAAATTAAAAAA-AAA-----TCt
gi|13 : AATA-TCAAAACAGAGTTCCTTGAT---GT-AAAGATCTCAAT-AGCGG-GCGGATTCC-TTTCT-ACTGATTAATATT-GCAA----AC-C-TAC-CGATAA-----ATATATGCACATGTACCT------TAA-TAAAAGCTCTGAT-TA-CCCTGAATCCAC---------AAAATA--C-TA--TCCC-TTTGGACT-T-GGTGT-A-TATGC--CAAGA-AGAATAT--GTT-
gi|14 : -AAA---ACAACTTA----GGAAAACGCAGT---TATTTACATAATGATA--TAGAAAA-AGAA-CTCATCA-AA-GTAGA--TAAA-CTCG-ACCGATCTAATCTCCTAAAA-CTACAG-AAA-AAGACGA---AA-CAA-TATAATCG-TGTTCCCT-GTG-TAGTAA---ACT-ATTC-TAAAG-GAC
gi|15 : C-C-AATATCCTCAAAATTAAAAAAGAAA-----TCGAC-AAAAAATTCTTGAG
gi|16 : cC-GT--AT-AGAATAT--GTT-CAAC--AGAA--GAAAGCTAGTCGA-GTCAA--CGGAAAAGAGA-AAT------GAA-AAACGGA-AATCTG----AGAAAaactctgaccgccccaaatatgctttccaaaa
gi|17 : ACCCAACGGAAAAATT-AGCCGAGTAC------GTGGAGTCACAACTC--GAGAATGCAAATAAGT
gi|18 : tatatatatatatatatatTTAGATAATGAGA--TAGAAAA-AGAA-CTCATCA-AA-GTAGA--
gi|19 : ATCCGAATAT-TCAGCT-TGA-CC-TGC-GCCA--------ATC
gi|2 : aattgAACACTTTACCCCCT-AAGAAAA-GAGTTAGAAAACGAAACTCTAGAA-CTAACATACCATG-ACCAAAAGAAA-GGAG-TAATCAT--TGCCCATCCAAGAAAATTAACAACAATGAGCAA-TAAG-TT-GTTG-G-ATAAGGTCTGAAAAGTTTACCGACATAACAAAATATTGATTTTA-----CC-----ATTGATT----------------AA-CGA--TT--AAAACATTGGAACG-AGGATTGCTCCTGCGGGAAT-TATTTT----CAAGAA-AAAGAATCCGAG-ATGA------CTCAGAAAATGACG-AAAGTAACAAAT---AAAA-TTTGTAAAGGTAATTGGACAACC-C-AAGAAGGA--AAACAAATGGCTCGAC--ATAC-AT---TA-GTCAAGTTAAA-GAA-AC-TTA-TTAGAGGGC-G--AAAGAATGTTTTCTAGAAAA-A---TAGTACTCGC-GC--AGAAA-GGCTAT-ACGGAGC-ACTAACCGACC-AAACATAGTAATGAAGACCTGGCTAG-CA---GATC-GGGATAGTGGTTA-GGAT-CGGATCGAAACGTTGAGCAAGTTGGAAAAGCGAAATGCTTCAACAGCGCTTCTTATAGTGAAATAAACGTACGACAAAA-C-CA-C-AATTACCAATAAA-TAAAACAAAT--AGTAAATAATCT-CACAAAAAAGGATCCATTGTGCGTCTGAATTAAGACATTAATCTTCCTA-CCACCGAATTGGACA-TCCCGGAAAACTCCAAAGCTAAAGTCCGAAAA-TAC-CAAAGA--GA--ACAGATCG------TCGAA-CTGATA---G-AAATGA-CGACAGCAACCCAAGG---AATTAAGCCGAGTACG-----GTTGAGTC-CAACTC--G-GAATGCAAAT-AGTCGCTCTGATAGTTTATGTATCATCATCCGACA-GATTTTTTAACGAAAC-TTCAATTTGGTGAAACAACCATTACCAGACCCCTTGTATTC---TTTT-GCATT----GGA--TAAAAGCTC-TTACCCCAGTCT--C-T-G-AAAGAACCGCGCGAATGTCATT------GAAAAT-CTTAACA--AACGTCATGAAAAGAAGTAGACCACGGAAATGTGTATTGCGAAA-GATGGATTGCTTGGTCC-T-GAAATTAAT-A--ATTT---T---TTTCTCACATCCATTTACACAAA-TCGAT-AAACAC-ACATTCATAGCCGAAAGTACTGCTATC--AT-CGAAACTTGGT--CG-AA--AT--GC-TGTG-TTTCATATTGGG---A---GGATGGAAAG-A---C--GCT--TTTTG-AAAAT---CTGCAAAAGC-ACTCCAGTATTTTA-TGGTATC-GA--TAGAT----TGA--GACATTTT-T---GCCAT-CTGA--CGGAA-ATGA--AAAGA-A-CTTAAAATC-ATTTCATA--AAACCGC-GAACTGA------ATTTAACATCCGAATAT-TCAGCT-TGA-CCGTGC-GCCA--------A-CTAAGA-CAATAACGGATTTCC-TGAT---GT--ACGAT-TCAA--AAC---ACGGATTCC-TTTCT--CAGACCTTTATT-GCAT----AC-C-TAC---GTAA-----A------CATA--TACT---------A-TAAAA-CTCTAACTCA--CC-GAACCCAC----------AAGAAAGCGTAT-TCCT-TT--GACT-TCGGTCG-ATCGTGCGGC--GT-AAAA-----GTTACGAC--TGAA---AACACT--CAGT-TTAAAACTG--AA---GA-AAT-------CA-AAA---ATAACTTA----AGAAA--GCGGT---TA-TTAGAT-ATGAT---T--GAAAAAGAA-CTCAT-A-AA-GT--A--T--A-CTCG-ACCGATCAA--CTCCA-TAA-C-ACAGAAAA----GCGAG--AAGCAG-C-TTATCG-TGTTCCCC-TTGTTAGTAA---ACT-A-TC-TAAA--GACTCC-CAAATATTCAT-GAATTAAAAAA-AAAAAAATTCGAA-AAAAAAATCTTGAG
gi|3 : cGAAAACGAAGCTATAAAATCTAACATA------AC-AAAAGAAAAAGAAGTAACCATCTTGTC-TTCCAGGAAAGT----AAA--TAAGCAATTACGCTTAGTTGAG-AAAAGGGTTGAAATTTGTACCGACGATGCAAAATATCGATTTTAATATACTCA---GTTG-TT----------------AACGGA--TTAAAAAACATGAGAACGTAAGA-TACGTCTGTGGGGATATTTTTTTTTTC--GAATAAAGAATCCGAGAAAGAATCATCTTCAAGTAATGATG-AAGGTTACAAATGTGAAAA-TTA-TAAAGATAATTGGAC-ACC-GGAAGAAGGAAGAGACAAATGGATC-ATGAAAAG-AT---TA-GAGTAGTCAAA-GAAGAC-GTAATTAA------GAAAAAGGAATTTTTCTTG-CAATACTTTATTACGCGCGGCAAAGAAAGGGCTATGAAAGAACTAGTGACCGACCAAAACATAGTTAT-TAGACCTG--CAGACAAAGGATCTGGGATAACGATAATGGATTCGGATAAATACGTCGATCAAG-TAGAAAAT-GAAATGCTT--ATAGTGCGTCTTACAGTGAAATAAA-GTACGGCAAAAGC-AAACAAATTACCAATAAAATGAAATAAAA--AGTAAATAATATACATGAAAAAGGACCCATT-T-CTTCTGAATTAAGACATT-AT-TTCCTACCCAGTGAAGTG-ATAGT-CAGGGATACTCCAAGGT--AA-TCC-AAAACTACACAA--AAAGA--ACAATCCGT----TTCGAA-CT-ATATAGGTAAATGGCCGACAACATCCGACGGAAAAATC-AGCCCAGTACCGGTATGTTGAGTAGCAACTCTCGAGAGTGCAAATAG-----------AG-TTATGTA-CAAGATACTACA-GATTTTTAAAAGAAACTTTTAATT--GTAAAGTAACCATTACCAGA-TTCCTCTGTTC-TATTCT-GTA-TATGTGGACGTGAAAGTACTATACCTCAGTATACC-A-GAAAAAAAGCTCGCG-ATATCATTTTTTTTAAAAAGGCAGTACAAGAGCGTCATAAA------TA--------AAA-ATATATTA-GAAATGATGGA-TGCT--GTTCCT-GACA---------------------TT------------------AA-T-AAT-AAACACTACATTCAGA-CTGAAGGaagcctgacgcccctcaaaaatgctttcccaaa
gi|3 : ---G---GGAGGGGAAT-AAATC--CTT--TTTTTTTTTAT---TTA-AAAACCTA--CCAGTATTTTA-A-GTA-C-AA--TATAT----TGAT-GACA-TTT-TTTTGGCAT-CTGAACTGGAA-CAGA--AGAACTA-C--AAA--TAAT-----------CCGC-AAA-TGATATACTAGT--ACATCCAAACAG-TCAGGC-TGA-CC-TGC-GACA--------ATACAATATCAAA--TTGATTTCCTTGAT---GT-AACGATCTCAAT-AA-AG-ACGTATTTA-TTTCT-TCTGCTTTATATT-GCAA----AC-C-TAT-CGATAA-----A------CATATGTACCT------TAA-TAAAAGCTCTAAC-TATCCC-GAATCCAC---------AAAAATTGC-TAT-TCCC-TTTGAATT-T-AGTCT-A-ATTGC-GC--GT-AAAATAT--GCT-CCAC--AAAT--GAAAAATGCCAGA-TTCAA--CG--AAAG-TA-AATAATAAAAAA-AAA---AAAACTTA----AGAAAACgaggggaataaatcctttttttttttatttaaaaacctaccagtattttaagtacaatatattgatgacatttttttggcatctgaactggaacagaagaactacaaataatccgcaaatgatatactagtacatccaaacagtcaggctgacctgcgacaatacaatatcaaattgatttccttgatgtaacgatctcaataaagacgtatttatttcttctgctttatattgcaaacctatcgataaacatatgtaccttaataaaagctctaactatcccgaatccacaaaaattgctattccctttgaatttagtctaattgcgcgtaaaatatgctccacaaatgaaaaatgccagattcaacgaaagtaaataataaaaaaaaaaaaacttaagaaaac
gi|4 : gaaaacgaagctataaaatctaacataacaaaagaaaaagaagtaaccatcttgtcttccaggaaagtaaataagcaattacgcttagttgagaaaagggttgaaatttgtaccgacgatgcaaaatatcgattttaatatactcagttgttaacggattaaaaaacatgagaacgtaagatacgtctgtggggatattttttttttcgaataaagaatccgagaaagaatcatcttcaagtaatgatgaaggttacaaatgtgaaaattataaagataattggacaccggaagaaggaagagacaaatggatcatgaaaagattagagtagtcaaagaagacgtaattaagaaaaaggaatttttcttgcaatactttattacgcgcggcaaagaaagggctatgaaagaactagtgaccgaccaaaacatagttattagacctgcagacaaaggatctgggataacgataatggattcggataaatacgtcgatcaagtagaaaatgaaatgcttatagtgcgtcttacagtgaaataaagtacggcaaaagcaaacaaattaccaataaaatgaaataaaaagtaaataatatacatgaaaaaggacccatttcttctgaattaagacattatttcctacccagtgaagtgatagtcagggatactccaaggtaatccaaaactacacaaaaagaacaatccgtttcgaactatataggtaaatggccgacaacatccgacggaaaaatcagcccagtaccggtatgttgagtagcaactctcgagagtgcaaatagagttatgtacaagatactacagatttttaaaagaaacttttaattgtaaagtaaccattaccagattcctctgttctattctgtatatgtggacgtgaaagtactatacctcagtataccagaaaaaaagctcgcgatatcattttttttaaaaaggcagtacaagagcgtcataaataaaaatatattagaaatgatggatgctgttcctgacattaataataaacactacattcagactgaaATTGA-TGCT--GTTCTT-GATAATGAT-A--A-------------------------------------AT-AAACATTACATTCAGA-CTGAAGGGACCGCTATTGGAT-CAAAACTTG-----------AC--GACCGTA--TT-GCAT--GG---GGGTGGGTGGGAGC-AAATCTTCTT--TTTTTTTAAAT---CTG-AAAAGCTA--TC----------------C-GA--TATGT----TGAT-GACA-TTT-T---GGCAT-CTGGATCGGAA-C------------------------------A--AAACCGC-GAA-TAA------AGT--ACATCAGAACAT-TCAGCT-TTC-TC-TACGGCTACAACACATATCTAACA-CCAAAACG
gi|4 : aAAAGCCGGATTTCCTTGAT---AT-AATGATTTTAAT-AACAG-AAGGCTTCCCTTTCT-ACTGACTTTTACT-GCAATAAAACTC-TAA-CGATAA-----AGATACACGTATGTACATGTATCATAA-CAAAAGCTCTATC-CG-TCCAGAATCTAC---------AACAAAC-C-TAC-CCCC-TTTGGACT-T-ATCCT-C-CGTGC-GC--TT-AG---AT--GTT-CTAC--GGAATTTAAAA-TACTAGA-TTCAA--CG--AAAG-GA-ACT------AAAGAGA---AT--CTT-----AGAAAACATGCT---TATTTAGATAATGACG--AAGAAAAAAACC-CTT-TTA-AA-ATACA------------------CAAATCTCCT-AAA-CTACAGGGAA-AATACG----AAGCGG-TATAACTGTTGT--CTT-TTG-TGGTAA---ATT-GTTC-Tcagatcgaaagtgcgaatagatctcaagattgatagttatattatattgtatgtacattttaaaaaagaaagaaagccggatttccttgatataatgattttaataacagaaggcttccctttctactgacttttactgcaataaaactctaacgataaagatacacgtatgtacatgtatcataacaaaagctctatccgtccagaatctacaacaaacctaccccctttggacttatcctccgtgcgcttagatgttctacggaatttaaaatactagattcaacgaaaggaactaaagagaatcttagaaaacatgcttatttagataatgacgaagaaaaaaacccttttaaaatacacaaatctcctaaactacagggaaaatacgaagcggtataactgttgtcttttgtggtaaattgttct
gi|5 : aattgatgctgttcttgataatgataaataaacattacattcagactgaagggaccgctattggatcaaaacttgacgaccgtattgcatgggggtgggtgggagcaaatcttctttttttttaaatctgaaaagctatccgatatgttgatgacattttggcatctggatcggaacaaaaccgcgaataaagtacatcagaacattcagctttctctacggctacaacacatatctaacaccaaaacgcagatcgaaagtgcgaatagatctcaagattgatagttatattatattgtatgtacattttaaaaaagaaagAA-TCC-AAAAATACACAA--A--GAGAACAATCCGTGCGTTTCGAA-CT-ATA---GTAAATG-CCAACAGCACCCGACGGAAAAATT-AGCCGAGTAC------GTTGAGTCACAACTC--GAGAAAGCAAATA-GTCGCT-TGATAG-TTATGTA-CAAGATACGACATAATTTTTT-AAGAAACTTTCAATT--GTGAAACAACCATTACCAGA-CCCTTGTATTCTT-TTTT-GCA-T----GGATGTGAAAGCTCTTTACCCCAGTATACCTT-GAAAAGAAGCGTGCG-ATGTCATT------AAAAATGCTTTACAAGAACGTCATGAAAAGAAGTAGA-CACGGAAA-GTGTA-TA-GAAATGATGGA-TGAT--GT-CTT-GATAATAATAA--ATTTTAGT---TTT------------------AA-T-GAT-AAACACTA-ATTCAGA-CCGAAGGTACCGCTATCGGAT-CGAAACTTGGT--CATAACTAC--GCTTGTG-TTT-ATAT--GG---G---GGATGGGA---AAATC--C-T--TTTTGAAAAAT---CTG--AAAGCTA--CCAA-ATTTTA-T-GTA-C-GG--TATAT----TGAT-GACA-TTT-T---GGCAT-CTGGA-CGGAA-CAGA--AGAAT-A---TAAA--CAATTTCATA--AAACCGC-GAA---G------AAT--ACATCCGAATAT-
gi|6 : -TCAGCT-TGA-C--TGC-GCCA--------ATCTAATA-CAAAA-CGGATT-CCTTGAT---GT-AACGATG-CAAT-AACAG-ACGGATTCC-TTTCT-ACAGACTTGTATT-G-AA----AC-C-TAC-CGACAA-----A------CAT--GCACCT------TGA-TAAAA-CTCTAAC-CACCCC-GAATCCAC---------AAAAAAAGC-TAT-TCCC-TTTGAA-T-T-GGTCT-G-CGTGC-GC--GT-AGAATAT--GTT-CAAC--AGAA--GAAAACTATCAGA-TTCAA--CG--AAA--GA-AAT-------AA-AAA---ATAACTT-----AGAAAA-GCGGG---TA-TTAGATAATGATA--TAG--AAAAGAACCTCATCA-AA-GTAGA--TAAA-CTCG-A-CGATCAAATCTCCTAAAA-CTACA-AAAA-AAGACG----AAGCAG-TATAATCG-TGTTCCCC-TTG-TAGTAA---ACT-ATTC-TAA---GACTTC-C-CATATTCATAAATTTAAAAAA-TA---------AC-AAAAAATTTCTGAG
gi|7 : -TGCT--GTCATTCGATAATAAT-ATAATTA---TAG-TTT------------------AAAT-GATTGAACACTACATTCAG--CC-AAGGTACCG-TA-CGGATGCGAAACTTGGTGCCGTAAT-AC--GCTTGTGGTTT-TTAT--GGCAGG---GGATGG--AG-AAATC---TT--TTTTGAAAAAT---CTG-AAA-GCGT--TCAGTATTTAC-T-G-A-C-GAAGTATAT-----GATTGACA-TTT-T---TG-ATACTG-ACCGGAAACAGAGAAGAAG-A--TTAAA--CAATTTCATACAAAACCGCCGAA-TGA------AAT--A-ATCCCGATATATCAGAT-TGA-CCATGC-GCCA---------TCTAATA-CAAAAACGGATTC---TGAT---GTTCACGAGCTCAAT-AAAGA-ACGGATCC---TTCT-A--AGCTTGTATTTGCAA----AC-CATACGCGATAA------------CATATGTACCT------TAAATAAAACTTCTAAC-CA-CCC-GAATCCAC---------AAAAaactctgaccgctcaaaatgcttccaa
gi|8 : ACTT-TATT-GGAGC---GC-C-TAC---ATAA-----T------TATAT--------------A-TAAAAGCTCGAAC-CA-CGG-AGATCCATCTCAAAAAAAAAAAAAAC-TAT-TCCCCTTTGGACTAT-GGTCTTA-CGTGC-GT--GTTATAATATTCGTT-CAACTTA-AA--GAAAA-TACCAAA-TTAAA------AAAA-AACAAC------AAC-AAC---A-AACGTATAGTAGAACAC-CGGTGAATAT---GATAATGAGAAATAGAAAAAGAAA-CTCATCATAATGTAGAACTGAATCTCGGACTGATCTAATCTCCA-AAAGCTAT-GAAAA-AAGACG----AAGCAGATAGAATCG-TGTTCCCCATTG-T--TACGTTACTAATTCTTAAAGAAATTTC-C-AATA-TCATAAA--TAAAAAA-
gi|9 : -ATA---GG---G---GGATCGGAACCAAAAC--ATTATTTTTGAAAAAAAAACTT-AAAAGCTA--C--ATATGTTACT-GTA-CCGA--TACATGTAATGAA-GACG-TTT-TTG-GAAAT-CTGGATCAGAA-CAGA--AGAAC---CTTAAAA-CAATT-----------------------------AT--ACATTC-----------CTATGAACC-TG-----A--------AC--AATAACCAAAACAGAGCTCCT-GAT---GT-AAAAAACTCAATTAACGGCGCGCATTCT-CTTCTCACTGATTAATATT-GCAA----CG-C-TACTCGATAATATATG------CACATGTACCT------T-A-T-AAAGCTCTGAT-TC-CCT-GAA-CCAC---------CAAAGAA---TACATCCC-TTT