lowQualScore : 11111 1111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 4444444444444 1 222222 22 4444444444444 1111 66666666666666666666666666666666666666666666666666 22222 11 00000 1 111 2222222222222 1 333333333 1111111 3333 5555555555555555555 111111 1 9999999999 1111111 44444444444444444444 222222222222222 111 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1111 11111111 55555555 4444444444
lowQualScore : 6 6 6 1 6666666666666 777 7 2 0 1 6 2 99 111111 33 8 8 8 9999999999999 33 1111 6 99999999999999999999999999999999999999999999999999 88888 99 00000 0 2 777 1111111111111 0 7 4 444444444 8888888 66 0 55 0 00 5 66 1 5 6 7777 1 8 8 1111111111111111111 666666 4 3 7777777777 66 4444444 66 4 4 77777777777777777777 0 000000000000000 444 5 88 0 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2 6 7777 88888888 99 8 66666666 0 8 2 0 8 1111111111 4
lowQualScore : . . . . ............. ... . . . . . . .. ...... .. . . . ............. .. .... . .................................................. ..... .. ..... . . ... ............. . . . ......... ....... .. . .. . .. . .. . . . .... . . . ................... ...... . . .......... .. ....... .. . . .................... . ............... ... . .. . ................................................................................................................................................................................................................................................................... . . .... ........ .. . ........ . . . . . .......... .
lowQualScore : 0 8 4 4 2222222222222 333 8 5 8 0 7 5 22 000000 00 0 0 0 0000000000000 22 2222 7 88888888888888888888888888888888888888888888888888 00000 55 00000 0 2 555 0000000000000 7 1 7 333333333 6666666 77 7 44 1 99 0 99 0 2 0 8888 1 9 9 6666666666666666666 444444 7 6 2222222222 99 6666666 11 4 4 44444444444444444444 8 444444444444444 000 6 00 8 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 8 4 0000 88888888 55 8 00000000 8 0 2 8 0 6666666666 5
consensus : ATGAGAAATAAATAAGGACAAGGTAAA-TA-GTTCCGATGTGT-TTATTCTGTTGATGGCGT-TACTGGCCG--CGGTGAA---T--TTGAGGC-T-ACCG-TANC--AA---ATA-GGGCCGCC-T--CACA-AA-----AC--------AA---C-AA-CAA----TNA---CAAGTCA-----CAAATCACAATTATCAANTCAAATCGTNNGTTCAAATCACAAATAG-TTCGA---ACATATAAGCAA----ATTTCCAAGATATGAAAAGTCTGTGCAACG--------ACATAAACA-------TGTTCCATGGCCACATAGTGGCCATGCGCAAAGTGCATATCCATATGTACA-AT--AGAAGNCACAGACTCACGATATC-CAATGTGCC-A-TATCAACGATATA-----AGCA----A-----AATTCAC------AGCNAAATGGTTTGAAATTAGTAGCACTCTTC--CATT------GGAG--TTGG-GGTG-CGACGAAAGCGCCA-TCGCA-ANAGG--G-----TTATCC-CGAG---TC-----ACC---GCGACGGTTGGTATATG-TAG-AGCTCG--CA---CCA--ANTGGCGATAGANNAGGNTT-CATC-AGTCTGAAAAATAAACTACAGAG-AGCAGNATGTG---GGC-C--AA-AATTTGGGGAGGGAGGGAGGGGAAT-T-C-T-GATATTTTTTGGGACGACAAA---TTTCCGTGTCT--TACCA-AAT----G-ATGA-----AAAGCA-TGAAANGGAAGT-GTGGAAATTGTAAATT-C--GGAG--------------C--GG------TTTTGCNAAACCGGGAAA----ATTCCG---TCA-NGGCAAAACCACTCGGAGTTAA--CCCTTGGATAAAA-TTCGCATATACTAG-ACAAGCTA-------AT-ATATGCACTAT
Reference ( gi|1 ) : ATGAAAAATAAATAAAGACTAGGTAAA-TA-A--CTGATGTGT-TTATTCTGTTGAGGGCGT-TACTGGCCG--CGGTGAA---T--TTGATAC-T-ACCG-TAGT--AA---A-A-GGGCTGCC-T--CACA-AA-----AC--------AA---C-AA-CAA----TAA---CAAGTCA-----CAAATCA-AATCATCAATTCAAATC-----TTCAAATCACAAATAG-TTCAA---ACA--------A----ATTTCCAAGATATGAAAAGT-TGTTCAAC---------ACATAAACA-------TGTTTCATGGCCACATGGTGGCCATGCGCAAAGTGCATATCCATATGTACA-AT--AGAAGTCACAGACTCATAATATC----TGTGCC-A-TATCAACGATATA-----TGCA----A-----AATTCAC------AGCAAAATGGTTTAAAATTA----------TC--CATT------GGAG--TTGG-GGTG-CGACGAAAGCGCCA--TACA-ACAGG--G-----TTATCC-AGAG---TC-----ACC---GCGACGGATGGTATATA-GAG-AGCTCA--CA---CCATGACT-GCGACAGACAAGGACTGCATTCGGTCTGAAAAATAAACTACAGAG-AGCAGAATCTG---GGTCC--AA-AATTTGGGGAGGGAGGGAGGGAAATTTGTTTGGATATTTTTGGGGATGATAAA---TTTCCGTGTCT--CACCA-AGT----G-ATGA-----AAAGCA-TGAAACGGAAGT-ATAGGAATTGTAAATTAT--GGAG--------------C--GG------TTTCGCCAAACCGGGAAA----ATTCCG---TCA-AGGCAAAACCACTCGGAGTTAACTCCCTTGGATAAAA-TTTGCATATACTAG-ACAAGCTA-------AT-ATATGCATTAT
gi|6 : ATGAGAAATAAATAAAGGCTATGGAAACTA-A--CGAGTGTGT-TTATTGT-TTGATGGCACGTACT-GCCG--CGGTGAA---T--TTGA-GC-TAACCGATAGCAAAA---A-A-GGGCTGCCTT--CACA-AAGAGAGACCACGCACAAA---CAAA-CAA----CAA---CAAG
gi|14 : atccaagAATATATAAGGACAAGGT-----------TCAGATGT-TTATTCTGTTGATGGCGT-TACCGGCCG--CGGTGAAT--T--TTGAGGC-T-ACCG-TAcatgtgacgggccatcaataaagcattattgtgcaatgggtaagcgccaaatgcacaacgcggtcaccaaaacatcaaatcaaggtcaaagtcacaaatcaaatcagtcaattcacgtcacaaatcaaaatcaatcaaatcgtcagttcaaatcacaaatagttcgaacatataagcaaatttccaagatataaagttgttcaacacataaacatgttccatggccacatagtggccatgcgcaaagtgcatatccatatgtacaataggggtcatagactcatgatatctgtgccatatcaacga
gi|10 : ccaagatgtctAACAAATAAACAC--AGTTTA-TATA--C--ATGTAA-ATGTTTGGTTGATGACGT-TAATTGCCGATATGTGAAGGTT--CTCAGAC-T-A--A-TAAT--AC---ATA-GGGCCGCC-T--CGCACAA-----AC--------AAATTC-AA-CAA-----AA----AAGT-A-----CAA
gi|5 : tatccaagatatctATAAATAG-GACAAGGTAAA-TT-GTTCCGATGTTTATTATT-TGTTGATGCGGT-TACTGGCCG--CGGTGAA---T--TTGAGGCTT-ACCG-TA-C--AA---ATT-GGGCTGCC-TCGCACA-AA-----AC--------AA---C-GA-AAA----TCA---CAA---A-----CAAAgatgtgactgcatgtcaat
gi|12 : atcaagatgtctgTAAGTAAGTACAAAGTAAA-TA-GTTCTGATGTTA-TCATTTTGTTGATGGTGA-CACTGACCA--GGGC-AA---TTATTGAGGC-T-ACCT-TATT--AACTTA-ATGGG----C-A--CATA-TA-----AC--------AC---C-AA-AAA----ATA---CA---TA-----CAAATataggtgacggtccatcaatagactcattgtgtcaatggtaggcgcaaatgccacaaacgccacaacacaacatcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatagtctcaaagtgagatcaaaagtctgtgcaacgacataaacatgttcaattgccacatagtggccatgcgcaaagtgcattattaataagacacagactcacgatatctcaatctgttaatatcaacgatataagcatttcacaattcaaagccaaatggtttgaaattagtagcactcttccattagttggggtgcgacgaaagcgccacttgcaagggcaat
gi|15 : tatcaaagatgcctgtTGT-TTATTCTTCTATGGTTGT-TACTGGCCG--CGGTGAA---C--TTacgtatgt
gi|2 : aaactgcctcctgataaaaaccacaattgttcacaagaGCG-T--CACA-AA-----A----------A---C-AT-CAAATCATAAGTTCAAGTCATAATTCAAGTCACAATTATCAAATCAAATCGTATGTTCAAATCACAATTAGCTTCAATATATA--------AGCACATTTCTAAGATATGAAAAGT-TGTGCAAC---------ACATAAACA-------CATTCCATGGC-----------CATGCGCAAAGTACATATCCATATGTACA-AT--AGAAGTCACAGACTCATGGTATT----TGTGCC-A-TATCAACGATATA-----ATCA----A-----AATCCAC------AGCAAAATGGTTTAAAATTATTAGCAATCTTC--CATT------GGAG--TTGG-AGTG-CGACGAAAGCGCCA--TAAA-CCAGG--G-----TTATCC-CGAG---TC-----ACC---ACGACGAATGGTATATG-TAG-ATCTCA--CA---CC-----------------AGGCCT--ATCCGGTCTGAAAAATAAACTACAGAGCAGTAAAATGAG---GG-------------AGGGAGGGAGGGAGGTGAATTTGCGTGGATATCTTTGGGGATGATAAT---TTTACGTGACT--CACCA-AAT----G-ATGA-----AAAGCATTGAAAT-GAAGT-GTAGAAATTGTAAATTAT--GGAG--------------C--GG------TTTCGCTAAACCGGGAAA----ATTCCG---TCA-AGGCAAAGCCACTCGGAGTTAACTCCCTTGGATAAAA-TTTACATATACTAG-ACAAGCTA-------AT-ATATGCATTATaggct
gi|6 : tgcaacaaaatatgcaacggccattcaataggcttattgtgcaatgagtaagtgcaaatgcacac-T--CACA-AA-----TC--------AAAT-C-AGTCAA----TT----CACGTCA-----CAAATCA-AA--ATCAAT-CAAATCGTCAGTTCAAATCACAAATAG-TTCGA---ACATATAAGCAA----ATTTCCAAGATAT--AAAGT-TGTTCAAC---------ACATAAACA-------TGTTCCATGGCCACATAGTGGCCATGCGCAAAGTGCATATCCATATGTACA-AT--AGGGGTCATAGACTCATGATATC----TGTGCC-A-TATCAACGAtattttcattataggga
gi|11 : atccaagatgagaaataaataaaggctatggaaactaacgagtgtgtttattgtttgatggcacgtactgccgcggtgaatttgagctaaccgatagcaaaaaagggctgccttcacaaagagagaccacgcacaaacaaacaacaacaagcatgtgacgggccatcaataaagcattattgtgcaatgggtaagcgccaaatgcacaacgcggtcaccaaaacatcaaatcaaggtcaaagCAAATAG-TTCGA---ACATATAAGCAA----ATTTCCAAGATATGAAAAGT-TGTTTAAC---------ACATTAGCA-------TTTTCCATGGCCACATGGTGGCCACGC
gi|9 : aagtcacaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAATAG-TTCGA---ACATATAAGCAA----ATTTCCAAGATATGAAAAGT-TGTTCAAC---------ACATAAACA-------TGTTCCTTGGCCACATGGTGGCCATGCGCAAAATGCATATCCATATGTACA-AT--AGAAGTCACAGACTCATGATATC----TGTGCC-A-TATCAACGATATA-----AGCA----A-----AATTCAC------AGGAAAATGGTTT-AAATTA----------a
gi|3 : AGATACGAAAAGTCTGTGCAATGACAATCTGACATAAACACATTATATGTTCAATTGCCACA--GTGGCCATGCATCAGATGCATGCGTAAACGTGCATATCAATAAGACACAGACTCACGATATCTCAATCTGTT-ATTATCAACGATATA-----AGC-----------AGTTCAC------A-------GGTTT-GAATTAGTAGCACTCTTC--CATT------GGAG--TTAG-TGTG-CGACGAAAGCGCCA--GAAA-GGAAG--A-----TTATCC-CGGG---TC-----ACC---GCGACGGTTGGTAAATG-TAC-AGCT-----------ATCAAT-AGGACAGATTCGGAT--CA---AATCTGAAAAATAAACTAAAGAC-AGCAGTATAT-----------AATGGTTTGGGGAGGGAAGGAAGGGAATATTTTTTAACA-------GGATTTT------TTTCCGC-TCT--TATCA-AATATCAA-AT-A-----AAAGCC-TGGAAAGGAAGT-GCAGAGATTGTAATTTCC--GAAGTTGTTTTGCACAGCC--GGAAAACATTTTGCAAAGCTGGGAAA----ATTCCA---TCA-TGGCAAAACCACTCGAA--TGA--CCCTTGGATAAAA-TTAACATATACTAG-ACAAACTAAT-----AT-ATATGCGCTAT
gi|8 : gtctcaaagtgAGATACGAAAAGTCTGTGCAACG--------ACATAAACA-------TGTTCAATTGCCACATAGTGGCCATGCGCAAAGTGCATATTAATA-----------AGA---CACAGACTCACGATATCTCAATCTGTTAA-TATCAACGCTATA-----GGC-----------AGTTCACAATCAAAGCCAAATGGTTTGAAATTAGTAGCACTCTTC--CATT------GGAG--TTGG-GGTC-CGACGAAAGCGCCAGTTGCA-Atattacatatgtatatactgattacacacaaaatcaaagtaaataatgcaatgaaatatacaattaaaaaaa
gi|5 : aaagtgGAGATCAAAAGTCTGTGCAACG--------ACATAAACA-------TGTTCAATTGCCACATAGTGGCCATGCGCAAAGTGCAT-----TAT---TA-AT----AAGACACAGACTCACGATATCTCAATCTGTTAA-TATCAACGATATA-----AGCATTTCAC----AATTCAA------AGCCAAATGGTTTGAAATTAGTAGCACTCTTC--CATT--------AG--TTGG-GGTG-CGACGAAAGCGCCACTTGCA-Agg
gi|16 : atcaagatgtctgataaataggacaaggtaaattgttccgatgtttattatttgttgatgcggttactggccgcggtgaatttgaggcttaccgtacaaattgggctgcctcgcacaaaacaacgaaaatcacaaacaaaataggtgacggtccatcaatagactcattgtgtcaatggtaggcgcaaatgccacaaacgccacaacacaacatcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatagtctcaaagtTGCATATCCATATGTACA-AT--AGAAGTCAAAGACCCATGATATC----TGTGCC-A-TATCAACGATgggcaat
gi|13 : CA-AT--ATATGATGCAGACTCTTGATATA----TGTGCC-A-TATCAACGATATAAGGAGTTCA----A-----AATTCAC------AGCAAAATTGTTTGAAATTA----------TTAGCATTCTTTCAAGAGATTTGG-GGTA-CGACGAAAG
gi|4 : AAGACACAGATTTACGATATCGCAATTTGTT-AATATCAGCGATATA-----AGCA----GTTCACAATTCAA------AGCCAAATGGTTTGAAATTAGTAGCACTCTTC--CATT------GGAG--TTAG-GGTG-CGACGAAAGCTCCA-----G-AAAGG--GGAAGACTATTC-CCGGTTTTC-----ACC---GCG-CGGTTGGTA
gi|7 : atattaat----------TC--CACT------AGAG--TTTATGGTG-CGACGAAAGCGCC---CACG-AC--C--A-----TT-TCC-AGA----TCTGTAGACT---GCGCC--ATCGT-TAAACGAGAAGCCCGGTCAGGGCCA-GATTGGCG-TTGACA-----T-CATT--GAATG-AAAGTA----ACAAAG-AGCAGTATGTATATGGTTCATAA-AA---GGGGA-GGAAGGAG---------------TATTTTTTTGGAAGACAAA---ATTCAGTA------------------G-AGG-------AAGCA-T------GGAGC-ATG-----TGCTAATTTC--AGAG--------------T--GG------GTTTGTTAGATCGAGAAA----ATTCCGGAATAATAAACACAA-CAATAGG--------CCCACAGAT-AAA-TGCACATATACCAA-ACAAGCTATGACTGTATCATATGCAGTAaaggtacagctatgcagggtttggggtggcaacgaaaagccgcgcagaaaggaagacatccgagagtcacccccgcgacgattgcgatatattacagctagcaatagagcaggttcggatcaaatctgaaaataaactaaggacttgcacgtataattttgggagggagggtggggatattttttgacagcaaacagttctcgttctaataccacaatgtataatcttgaaagaaaggaaagtgatgagattgtaatttcggagtttttgcacagccggaaaattccgttcattaaatttcaggagtttgtttttgccaaactgggacattccattccatatggtaaaccactggaatgacccttggataaaaattcgcatatactagaacaagctaatatgcact
gi|19 : aatagttgtactct----------TC--CATT------GGAC--ATAG-GGTC-TGACGAACACGCCACTTGCA-Agtatt
gi|4 : cattct--TTGG-GGTGGCAACGAAAA-GCCG--CGCAGAAAGGAAG-----ACATCCGAGAG---TC-----ACCCCCGCGACGATTGCGATATA--------TTA--CA--------GCTAGCAATAGAGCAGGTTCGGATCAAATCTGAAAA-TAAACTA---------AGGACTTG---CACGT--AT-AATTTTGGGAGGGAGGGTGGG-----------GATATTTTTTG--ACAGCAAACAGTTCTCGT-TCTAATACCACAAT----GTATAATCTTGAAAG-----AAAGGAAAGTGATGAGA-TTGTAATTT-C--GGAG--------------T----------TTTTGCACAGCCGG-AAA----ATTCCG---T
gi|4 : atattaataagacacagatttacgatatcgcaatttgttaatatcagcgatataagcagttcacaattcaaagccaaatggtttgaaattagtagcactcttccattggagttagggtgcgacgaaagctccagaaaggggaagactattcccggttttcaccgcgcggttggtaaaggtacagctatgcagggtTAAATT-TCAGGAG--------------TTTGT------TTTTGCCAAACTGGGACATTCCATTCCA---T-A-TGGTAAA-CCACT-GGAATGA---CCCTTGGATAAAAATTCGCATATACTAGAACAAGCTA----------ATATGCACtcattaaatttcaggagtttgtttttgccaaactgggacattccattccatatggtaaaccactggaatgacccttggataaaaattcgcatatactagaacaagctaatatgcact
gi|17 : atattaataagacacagatttacgatatcgcaatttgttaatatcagcgatataagcagttcacaattcaaagccaaatggtttgaaattagtagcactcttccattggagttagggtgcgacgaaagctccagaaaggggaagactattcccggttttcaccgcgcggttggtaaaggtacagctatgcagggtttggggtggcaacgaaaagccgcgcagaaaggaagacatccgagagtcacccccgcgacgattgcgatatattacagctagcaatagagcaggttcggatcaaatctgaaaataaactaaggacttgcacgtataattttgggagggagggtggggatattttttgacagcaaacagttctcgttctaataccacaatgtataatcttgaaagaaaggaaagtgatgagattgtaatttcggagtttttgcacagccggaaaattccgttcatCCCTTGGATAAAA-TTTGCA-ATACTAA-ACAAACTA-------AT-ATATGCA
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): TTATCCAAAATGTCTGATAGATAAGGACAAGGTAATAATTCCGATGG
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 111111 111 111111 11111111 11 1111 22222222222222222222222222222 11111111111111 111111 2222222 11 2 2 11111111 1111111 4444 11111 2222222222 111111 4444444444444444444444 111 11111 111 11111111111111111111111111111111111111111 111 777777777777777777777 9999999999999 1111 333333333333333333333333333333 11 2222 1111 55555555555555555555 1111 11 1111111 3333333333
lowQualScore : 5 5 666666 5 444 5 0 5 5 77 666666 0 0 5 5 6 77777777 00 0000 0 5 66 5 5 66666666666666666666666666666 55555555555555 888888 6666666 2 77 11 0 1 2 1 88888888 6666666 22 2 4 9999 1 1111 8 4 4 22222 5555555555 444444 2 0 2 4 4 3333333333333333333333 99 111 66666 111 7 99 4 1 5 77777777777777777777777777777777777777777 444 3 0 5 0 8 1 444444444444444444444 0000000000000 88 6 5555 555555555555555555555555555555 88 11 5555 4 7777 2222 1 44444444444444444444 4444 5 1 11 55 8888888 6 2 6 1111111111
lowQualScore : . . ...... . ... . . . . .. ...... . . . . . ........ .. .... . . .. . . ............................. .............. ...... ....... . .. .. . . . . ........ ....... .. . . .... . .... . . . ..... .......... ...... . . . . . ...................... .. ... ..... ... . .. . . . ......................................... ... . . . . . . ..................... ............. .. . .... .............................. .. .. .... . .... .... . .................... .... . . .. .. ....... . . . ..........
lowQualScore : 0 0 444444 0 111 3 7 7 7 99 777777 7 7 7 7 7 33333333 22 4444 7 0 99 0 0 00000000000000000000000000000 11111111111111 888888 0000000 2 66 00 8 2 5 2 11111111 2222222 88 5 4 1111 0 9999 0 0 0 55555 9999999999 444444 8 2 5 0 0 2222222222222222222222 22 777 77777 777 3 22 0 0 2 88888888888888888888888888888888888888888 000 8 8 0 8 0 0 666666666666666666666 8888888888888 88 4 4444 000000000000000000000000000000 66 00 2222 0 2222 3333 0 22222222222222222222 2222 0 0 88 88 5555555 7 2 7 7777777777
consensus : ATGAGAAATAAATAAGGACAAGGTAAA-TAGTTC-CGA-TGTGT-TTATTCTGTTGATGGC-GT-TACTGGCCGCG--GTGAA---T--TTGAGGC-T-ACCG-TANC-A----AAT-AGGGCC---GCC-T--CACA-AAA-CAA---CAA--CAATNA---CAAGTCA-----CAAA-----TCACAAT-CATCA----ANTCA-------AATCGTANGTTCAAAT--CACAAATAGTTCGAACATATAAGCAAATTTCCAAGATATGAAAAGTCTGTNCAACGACA--------TAAACA-------TGTTCCATGGCCACATGGTGGCCATGCGCAAAGTGCATATCCATATGTACA-AT--AGAAGNCACAGACTCACGATATC-CAATGTGCC-A-T-ATCAACGATATAAG-----CA----A-----AATTCAC------AGCAAAATGGTTTGAAATTAGTAGCACTCTTCCATTGGAGTTGG-GGTG-CGACGAAAGCGCCA-T-GCA-A--GAGG--G-----TTATCCN-GAG---TC-----ACC---GCGACGGTTG--GTANATGTANAGCTCGCACCA--A-TGGCGACAGACTAGGATTG-C--A-TCGG-TCTGA---AAAATAAACTACAGAG-AGCAGNATG----TGGG--C--AA-AATTTGGGGAGGGAGGGAGGGGAATTTG--T---GATATTTTTTGGGACGATAAA---TTTCCGTGTCT--CACCA-AAT----G-ATGA-----AAAGCA-TGAAANGGAAGTGTAGAGATTGTAANTT-C--GGAGC--GGTTTCGCNAAACCGG--------------------GAAA----ATTCCGTCATGGCAAA-ACCACTCGGAGTTGA--CCCTTGGATAAAA-TTCGCATATACTAG-ACAAGCTA-------AT-ATATGCACTAT
Reference ( family-5271 ) : ATGAGAAATAAATAAGGACAAGGTAAA-TAGTTC-CGA-TGTGT-TTATTCTGTTGATGGC-GT-TACTGGCCGCG--GTGAA---T--TTGAGGC-T-ACCG-TANC-A----AAT-AGGGCC---GCC-T--CACA-AAA-CAA---CAA--CAATNA---CAAGTCA-----CAAA-----TCACAAT-TATCA----ANTCA-------AATCGTNNGTTCAAAT--CACAAATAGTTCGAACATATAAGCAAATTTCCAAGATATGAAAAGTCTGTGCAACGACA--------TAAACA-------TGTTCCATGGCCACATAGTGGCCATGCGCAAAGTGCATATCCATATGTACA-AT--AGAAGNCACAGACTCACGATATC-CAATGTGCC-A-T-ATCAACGATATAAG-----CA----A-----AATTCAC------AGCNAAATGGTTTGAAATTAGTAGCACTCTTCCATTGGAGTTGG-GGTG-CGACGAAAGCGCCA-TCGCA-A--NAGG--G-----TTATCCC-GAG---TC-----ACC---GCGACGGTTG--GTATATGTAGAGCTCGCACCA--ANTGGCGATAGANNAGGNTT--C--A-TCAG-TCTGA---AAAATAAACTACAGAG-AGCAGNATG----TGGG-CC--AA-AATTTGGGGAGGGAGGGAGGGGAATTC---T---GATATTTTTTGGGACGACAAA---TTTCCGTGTCT--TACCA-AAT----G-ATGA-----AAAGCA-TGAAANGGAAGTGTGGAAATTGTAAATT-C--GGAGC--GGTTTTGCNAAACCGG--------------------GAAA----ATTCCGTCANGGCAAA-ACCACTCGGAGTTAA--CCCTTGGATAAAA-TTCGCATATACTAG-ACAAGCTA-------AT-ATATGCACTAT
gi|1 : ATGAAAAATAAATAAAGACTAGGTAAA-TAA--C-TGA-TGTGT-TTATTCTGTTGAGGGC-GT-TACTGGCCGCG--GTGAA---T--TTGATAC-T-ACCG-TAGT-A----AA--AGGGCT---GCC-T--CACA-AAA-CAA---CAA--CAATAA---CAAGTCA-----CAAA-----TCA-AAT-CATCA----ATTCA-------AATC-----TTCAAAT--CACAAATAGTTCAAACA--------AATTTCCAAGATATGAAAAGT-TGTTCAAC-ACA--------TAAACA-------TGTTTCATGGCCACATGGTGGCCATGCGCAAAGTGCATATCCATATGTACA-AT--AGAAGTCACAGACTCATAATATC----TGTGCC-A-T-ATCAACGATATATG-----CA----A-----AATTCAC------AGCAAAATGGTTTAAAATTA----------TCCATTGGAGTTGG-GGTG-CGACGAAAGCGCCA-T-ACA-A--CAGG--G-----TTATCCA-GAG---TC-----ACC---GCGACGGATG--GTATATAGAGAGCTCACACCATGACT-GCGACAGACAAGGACTG-C--ATTCGG-TCTGA---AAAATAAACTACAGAG-AGCAGAATC----TGGGTCC--AA-AATTTGGGGAGGGAGGGAGGGAAATTTG--TTTGGATATTTTTGGGGATGATAAA---TTTCCGTGTCT--CACCA-AGT----G-ATGA-----AAAGCA-TGAAACGGAAGTATAGGAATTGTAAATTAT--GGAGC--GGTTTCGCCAAACCGG--------------------GAAA----ATTCCGTCAAGGCAAA-ACCACTCGGAGTTAACTCCCTTGGATAAAA-TTTGCATATACTAG-ACAAGCTA-------AT-ATATGCATTAT
gi|10 : AACAAATAAACACAGTTTATA-TA-----C-A-TGTAA-ATGTTTGGTTGATGAC-GT-TAATTGCCGATATGTGAAGGTT--CTCAGAC-T-A--A-TAAT-A----CAT-AGGGCC---GCC-T--CGCACAAA-CAAATTCAA--CAA--A---AAAGT-A-----CAA
gi|11 : tatccaagatatct-T--CACA-AAN-NNN---NNN--NNNNNN---NNNNNNN-----NNNN-----NNNNNNN-NNNNN----NNNNN-------NNNNNNNNNNNNNNNN--NNCAAATAGTTCGAACATATAAGCAAATTTCCAAGATATGAAAAGT-TGTTTAAC-ACA--------TTAGCA-------TTTTCCATGGCCACATGGTGGCCACGCgatgtgactgcatgtcaat
gi|12 : aagTAAGTAAGTACAAAGTAAA-TAGTTC-TGA-TGTTA-TCATTTTGTTGATGGT-GA-CACTGACCAGG--GC-AA---TTATTGAGGC-T-ACCT-TATT-AACTTAAT-GGG--------C-A--CATA-TAA-CAC---CAA--AAAATA---CA---TA-----CAAA-----Ta
gi|13 : tatcaaagatgcctgtCA-AT--ATATGATGCAGACTCTTGATAT----ATGTGCC-A-T-ATCAACGATATAAGGAGTTCA----A-----AATTCAC------AGCAAAATTGTTTGAAATTATTAGCATTCTTTCAAGAGATTTGG-GGTA-CGACGAAAGacgtatgt
gi|14 : AATATATAAGGACAAGGT--------TC-AGA-TGT---TTATTCTGTTGATGGC-GT-TACCGGCCGCG--GTGAAT--T--TTGAGGC-T-ACCG-TA
gi|15 : ccaagatgtctAA-TTGTTCACAA-GATGT-TTATTCTTCT-ATGGTTGT-TACTGGCCGCG--GTGAA---C--TT-AGGC-T-
gi|16 : aaactgcctcctgataaaaaccacTGCATATCCATATGTACA-AT--AGAAGTCAAAGACCCATGATATC----TGTGCC-A-T-ATCAACGAT
gi|17 : TGA--CCCTTGGATAAAA-TTTGCA-ATACTAA-ACAAACTA-------AT-ATATGCAC
gi|18 : gaaATAGATAAGGACAAGGT-AA-TAATTC-CGA-TG
gi|19 : ttatccaaaatgtctgCATTCTTCCATTGGACATAG-GGTC-TGACGAACACGCCACTTGCA-A--g
gi|2 : C---GCG-T--CACA-AAAACAT---CAAATCA-TAAGTTCAAGTCATAATTCAAG-----TCACAAT-TATCA----AATCA-------AATCGTATGTTCAAAT--CACAATTAGCTTCAATATATAAGCACATTTCTAAGATATGAAAAGT-TGTGCAAC-ACA--------TAAACA-------CATTCCATGGCCA-----------TGCGCAAAGTACATATCCATATGTACA-AT--AGAAGTCACAGACTCATGGTATT----TGTGCC-A-T-ATCAACGATATAAT-----CA----A-----AATCCAC------AGCAAAATGGTTTAAAATTATTAGCAATCTTCCATTGGAGTTGG-AGTG-CGACGAAAGCGCCA-T---A-AACCAGG--G-----TTATCCC-GAG---TC-----ACC---ACGACGAATG--GTATATGTAGATCTCACACCA-----GGC------CTA----T--C-----CGG-TCTGA---AAAATAAACTACAGAGCAGTAAAATG----AGGG-------------AGGGAGGGAGGGAGGTGAATTTGCGTG--GATATCTTTGGGGATGATAAT---TTTACGTGACT--CACCA-AAT----G-ATGA-----AAAGCATTGAAAT-GAAGTGTAGAAATTGTAAATTAT--GGAGC--GGTTTCGCTAAACCGG--------------------GAAA----ATTCCGTCAAGGCAAA-GCCACTCGGAGTTAACTCCCTTGGATAAAA-TTTACATATACTAG-ACAAGCTA-------AT-ATATGCATTAT
gi|3 : tgcaacaaaatatgcaacggccattcaataggcttattgtgcaatgagtaagtgcaaatgcacaAGATACGAAAAGTCTGTGCAATGACAATCTGACATAAACACATTATATGTTCAATTGCCACA--GTGGCCATGCATCAGATGCATGCGTAAACGTGCATATCAATAAGACACAGACTCACGATATCTCAATCTGTT-A-TTATCAACGATATAAG-----CA----G-------TTCAC------AG-------GTTTGAA-TTAGTAGCACTCTTCCATTGGAGTTAG-TGTG-CGACGAAAGCGCCA---GAA-AG-GAAG--A-----TTATCCC-GGG---TC-----ACC---GCGACGGTTG--GTAAATGTACAGCT---ATCA--A-TAG-GACAGATTCGGA-T--C--A---AA-TCTGA---AAAATAAACTAAAGAC-AGCAGTATA----T--------AATGGTTTGGGGAGGGAAGGAAGGGA------------ATATTTTTTAACAGGATTTT---TTTCCGC-TCT--TATCA-AATATCAA-AT-A-----AAAGCC-TGGAAAGGAAGTGCAGAGATTGTAATTTCC--GAAGT--TGTTTTGCACAGCCGGAAAACATTTTGCAAAGCTGGGAAA----ATTCCATCATGGCAAA-ACCACTCGAA--TGA--CCCTTGGATAAAA-TTAACATATACTAG-ACAAACTAAT-----AT-ATATGCGCTATtattttcattataggga
gi|4 : gtctcaaagtgAAGACACAGATTTACGATATCGCAATTTGTT-AAT-ATCAGCGATATAAG-----CA----GTTCACAATTCAA------AGCCAAATGGTTTGAAATTAGTAGCACTCTTCCATTGGAGTTAG-GGTG-CGACGAAAGCTCCA-----G-A--AAGG--GGAAGACTATTCC-CGGTTTTC-----ACC---GCG-CGGTTG--GTAAAGGTACAGCTtattacatatgtatatactgattacacacaaaatcaaagtaaataatgcaatgaaatatacaattaaaaaaa
gi|4 : atattaatTTGG-GGTGGCAACGAAAA-GCCG--CGCAGA--AAGGAAG-----ACATCCGAGAG---TC-----ACCCCCGCGACGATTGCGATATAT-TACAGCTAGCA------------ATAGAGCAGG-TT--CGGA-TCAAATCTGA---AAA-TAAACTA-AG-G-ACTTGCACG----T--------AT-AATTTTGGGAGGGAGGGTGGG-------------GATATTTTTT--GACAGCAAACAGTTCTCGT-TCTAATACCACAAT----GTATAATCTTGAAA-----GAAAGGAAAGTGATGAGATTGTAATTT-C--GGAGT----TTTTGCACAGCC-G--------------------GAAA----ATTCCGTatgcagggtttggggtggcaacgaaaagccgcgcagaaaggaagacatccgagagtcacccccgcgacgattgcgatatattacagctagcaatagagcaggttcggatcaaatctgaaaataaactaaggacttgcacgtataattttgggagggagggtggggatattttttgacagcaaacagttctcgttctaataccacaatgtataatcttgaaagaaaggaaagtgatgagattgtaatttcggagtttttgcacagccggaaaattccgttcattaaatttcaggagtttgtttttgccaaactgggacattccattccatatggtaaaccactggaatgacccttggataaaaattcgcatatactagaacaagctaatatgcact
gi|4 : atattaataagacacagatttacgatatcgcaatttgttaatatcagcgatataagcagttcacaattcaaagccaaatggtttgaaattagtagcactcttccattggagttagggtgcgacgaaagctccagaaaggggaagactattcccggttttcaccgcgcggttggtaaaggtacagctatgcagggtTAAATT-TCAGGAGTTTGTTTTTGCCAAACTGG--------------------GACATTCCATTCCAT-ATGGTAAA--CCACT-GGAAT-GA--CCCTTGGATAAAAATTCGCATATACTAGAACAAGCTA----------ATATGCACTtcattaaatttcaggagtttgtttttgccaaactgggacattccattccatatggtaaaccactggaatgacccttggataaaaattcgcatatactagaacaagctaatatgcact
gi|5 : atattaataagacacagatttacgatatcgcaatttgttaatatcagcgatataagcagttcacaattcaaagccaaatggtttgaaattagtagcactcttccattggagttagggtgcgacgaaagctccagaaaggggaagactattcccggttttcaccgcgcggttggtaaaggtacagctatgcagggtttggggtggcaacgaaaagccgcgcagaaaggaagacatccgagagtcacccccgcgacgattgcgatatattacagctagcaatagagcaggttcggatcaaatctgaaaataaactaaggacttgcacgtataattttgggagggagggtggggatattttttgacagcaaacagttctcgttctaataccacaatgtataatcttgaaagaaaggaaagtgatgagattgtaatttcggagtttttgcacagccggaaaattccgttcatATAAATA-GGACAAGGTAAA-TTGTTC-CGA-TGTTTATTATT-TGTTGATGCG-GT-TACTGGCCGCG--GTGAA---T--TTGAGGCTT-ACCG-TA-C-A----AAT-TGGGCT---GCC-TCGCACA-AAA-CAA---CGA--AAATCA---CAA---A-----CAAAATAGGTGACGGTCCATCAATAGACTCATTGTGTCAATGGTAGGCGCAAATGCCACAAA
gi|5 : atcaagatgtctgGAGATCAAAAGTCTGTGCAACGACA--------TAAACA-------TGTTCAATTGCCACATAGTGGCCATGCGCAAAGTGCAT-----TAT---TA-AT----AAGACACAGACTCACGATATCTCAATCTGTTAA-T-ATCAACGATATAAG-----CATTTCAC----AATTCAA------AGCCAAATGGTTTGAAATTAGTAGCACTCTTCCATT--AGTTGG-GGTG-CGACGAAAGCGCCACTTGCA-A--GGGcgccacaacacaacatcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatagtctcaaagtgagatcaaaagtctgtgcaacgacataaacatgttcaattgccacatagtggccatgcgcaaagtgcattattaataagacacagactcacgatatctcaatctgttaatatcaacgatataagcatttcacaattcaaagccaaatggtttgaaattagtagcactcttccattagttggggtgcgacgaaagcgccacttgcaagggcaat
gi|6 : atcaagatgtctgataaataggacaaggtaaattgttccgatgtttattatttgttgatgcggttactggccgcggtgaatttgaggcttaccgtacaaattgggctgcctcgcacaaaacaacgaaaatcacaaacaaaataggtgacggtccatcaatagactcattgtgtcaatggtaggcgcaaatgccacaaacgccacaacacaacatcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatagtctcaaagtATGAGAAATAAATAAAGGCTATGGAAACTAA----CGAGTGTGT-TTATTGT-TTGATGGC-ACGTACTG-CCGCG--GTGAA---T--TTGA-GC-TAACCGATAGCAA----AAA-AGGGCT---GCCTT--CACA-AAG-AGA---GAC--CACGCA---CAA---A-----CAAA-----CAACAAcaat
gi|6 : atccaagATC-A----AATCAAGGTCAAAG---T--CACA-AAT-CAAAT-CAGT-CAATT----CACGTCA-----CAAA-----TCA-AA---ATCA----A-TCA-------AATCGTCAGTTCAAAT--CACAAATAGTTCGAACATATAAGCAAATTTCCAAGATAT--AAAGT-TGTTCAAC-ACA--------TAAACA-------TGTTCCATGGCCACATAGTGGCCATGCGCAAAGTGCATATCCATATGTACA-AT--AGGGGTCATAGACTCATGATATC----TGTGCC-A-T-ATCAACGAcaagcatgtgacgggccatcaataaagcattattgtgcaatgggtaagcgccaaatgcacaacgcggtcaccaaaacatcaaatcaaggtcaaagtcacaaatcaaatcagtcaattcacgtcacaaatcaaaatcaatcaaatcgtcagttcaaatcacaaatagttcgaacatataagcaaatttccaagatataaagttgttcaacacataaacatgttccatggccacatagtggccatgcgcaaagtgcatatccatatgtacaataggggtcatagactcatgatatctgtgccatatcaacga
gi|7 : atccaagatgagaaataaataaaggctatggaaactaacgagtgtgtttattgtttgatggcacgtactgccgcggtgaatttgagctaaccgatagcaaaaaagggctgccttcacaaagagagaccacgcacaaacaaacaacaacaagcatgtgacgggccatcaataaagcattattgtgcaatgggtaagcgccaaatgcacaacgcggtcaccaaaacTAGTTGTACTCTTCCACTAGAGTTTATGGTG-CGACGAAAGCGCC-----CA-C--GACC--A-----TT-TCCA-GA----TCTGTAGACT---GCG-CCATCG--TTAAACGAGAAGCCCG-GTCA--G--GGC--CAGATTGGCGTTGAC--A-TCA---TTGAATGAAAGTA----ACAAAG-AGCAGTATGTATATGGT-TCATAA-AA---GGGGA-GGAAGGAG-----------------TATTTTTTTGGAAGACAAA---ATTCAGTA------------------G-AGG-------AAGCA-TGGAGC----ATGTG------CTAATTT-C--AGAGT--GGGTTTGTTAGATCGA--------------------GAAA----ATTCCGGAATAATAAACACAAC----AATAGG--CCCACAGAT-AAA-TGCACATATACCAA-ACAAGCTATGACTGTATCATATGCAGTA
gi|8 : aaAGATACGAAAAGTCTGTGCAACGACA--------TAAACA-------TGTTCAATTGCCACATAGTGGCCATGCGCAAAGTGCATAT---------TA-AT----AAGACACAGACTCACGATATCTCAATCTGTTAA-T-ATCAACGCTATAGG-----C-----------AGTTCACAATCAAAGCCAAATGGTTTGAAATTAGTAGCACTCTTCCATTGGAGTTGG-GGTC-CGACGAAAGCGCCAGTTGCA-A--gtatt
gi|9 : aaagtgAAATAGTTCGAACATATAAGCAAATTTCCAAGATATGAAAAGT-TGTTCAAC-ACA--------TAAACA-------TGTTCCTTGGCCACATGGTGGCCATGCGCAAAATGCATATCCATATGTACA-AT--AGAAGTCACAGACTCATGATATC----TGTGCC-A-T-ATCAACGATATAAG-----CA----A-----AATTCAC------AGGAAAATGGTTT-AAATTAgg
Alignments
lowQualScore : 111111 111 111111 11111111 11 1111 22222222222222222222222222222 11111 1111 2222222 11 2 2 11111111 1111111 4444 11111 2222222222 111111 222 111111 111 11111 111 77777777777777777777777777777777777777 111 7777777777777777777777 77777777777 1111 333333333333333333333333333333 222 1111 55555555555555555555 1111 11 11 3333333333
lowQualScore : 5 5 666666 5 444 5 0 5 5 77 666666 0 0 5 5 6 77777777 00 0000 0 5 66 5 5 66666666666666666666666666666 44444 0 4 8 2 7777 1 6666666 2 66 11 0 1 1 1 88888888 6666666 22 2 4 9999 1 1111 8 4 4 22222 5555555555 444444 3 0 2 4 4 111 4 333333 77 111 66666 111 7 99 1 1 1 66666666666666666666666666666666666666 444 3 0 5 0 8 1 3333333333333333333333 88888888888 0 3 6 5555 444444444444444444444444444444 88 44 88 1 1 222 2222 0 1 44444444444444444444 4444 6 2 11 55 6 3 88 6 2 6 1111111111
lowQualScore : . . ...... . ... . . . . .. ...... . . . . . ........ .. .... . . .. . . ............................. ..... . . . . .... . ....... . .. .. . . . . ........ ....... .. . . .... . .... . . . ..... .......... ...... . . . . . ... . ...... .. ... ..... ... . .. . . . ...................................... ... . . . . . . ...................... ........... . . . .... .............................. .. .. .. . . ... .... . . .................... .... . . .. .. . . .. . . . ..........
lowQualScore : 0 0 444444 0 111 3 7 7 7 99 777777 7 7 7 7 7 33333333 22 4444 7 0 99 0 0 00000000000000000000000000000 33333 2 3 0 8 0000 0 0000000 2 44 00 8 2 0 2 11111111 2222222 44 5 4 1111 0 9999 0 0 0 55555 9999999999 444444 0 2 5 0 0 888 4 333333 77 777 77777 777 3 22 0 0 0 22222222222222222222222222222222222222 000 8 8 0 8 0 0 8888888888888888888888 66666666666 6 2 4 4444 666666666666666666666666666666 66 66 22 4 0 000 3333 7 0 22222222222222222222 2222 7 5 88 88 4 5 33 7 2 7 7777777777
consensus : ATGAGAAATAAATAAGGACAAGGTAAA-TAGTTC-CGA-TGTGT-TTATTCTGTTGATGGC-GT-TACTGGCCGCG--GTGAA---T--TTGAGGC-T-ACCG-TANC-A----AAT-AGGGCC---GCC-T--CACA-AAA-CAA---CAA--CAATNA---CAAGTCA-----CAAA-----TCACAAT-CATCA----ANTCA-------AATCGTANGTTCAAAT--CACAAATAGTTCGAACATATAAGCAAATTTCCAAGATATGAAAAGTCTGTNCAACGACA--------TAAACA-------TGTTCCATGGCCACATGGTGGCCATGCGCAAAGTGCATATCCATATGTACA-AT--AGAAGNCACAGACTCACGATATC-CAATGTGCC-A-T-ATCAACGATATAAG-----CA----A-----AATTCAC------AGCAAAATGGTTTGAAATTAGTAGCACTCTTCCATTGGAGTTGG-GGTG-CGACGAAAGCGCCA--TGCA-AGAG---G--GTTATCCN-GAG---TC-----ACC---GCGACGGTTG--GTANATGTANAGCTCGCACCAATG---GCGACAGATTNGGATTG-CA-TCGGTCTGA---AAAATAAACTACAGAG-AGCAGNATG----TGG---G---AA-AATTTGGGGAGGGAGGGAGGGGAATTTG--TGGATATTTTTTGGGACGATAAA---TTTCCGTGTCT--CACCA-AAT----G-ATGA-----AAAGCA-TGAAANGGAAGTGCAGAGATTGTAATTT-C-GGAGC--GGTTTCGCNAAACCGG--------------------GAAA----ATTCCG-TCATGGCAAA-ACCACTCGGAGTTGA--CCCTTGGATAAAA-TTCGCATATACTAG-ACAAGCTA-------AT-ATATGCACTAT
Reference ( family-5271 ) : ATGAGAAATAAATAAGGACAAGGTAAA-TAGTTC-CGA-TGTGT-TTATTCTGTTGATGGC-GT-TACTGGCCGCG--GTGAA---T--TTGAGGC-T-ACCG-TANC-A----AAT-AGGGCC---GCC-T--CACA-AAA-CAA---CAA--CAATNA---CAAGTCA-----CAAA-----TCACAAT-CATCA----ANTCA-------AATCGTANGTTCAAAT--CACAAATAGTTCGAACATATAAGCAAATTTCCAAGATATGAAAAGTCTGTNCAACGACA--------TAAACA-------TGTTCCATGGCCACATGGTGGCCATGCGCAAAGTGCATATCCATATGTACA-AT--AGAAGNCACAGACTCACGATATC-CAATGTGCC-A-T-ATCAACGATATAAG-----CA----A-----AATTCAC------AGCAAAATGGTTTGAAATTAGTAGCACTCTTCCATTGGAGTTGG-GGTG-CGACGAAAGCGCCA--TGCA-AGAG---G--GTTATCCN-GAG---TC-----ACC---GCGACGGTTG--GTANATGTANAGCTCGCACCAATG---GCGACAGACTAGGATTG-CA-TCGGTCTGA---AAAATAAACTACAGAG-AGCAGNATG----TGG---G--CAA-AATTTGGGGAGGGAGGGAGGGGAATTTGT---GATATTTTTTGGGACGATAAA---TTTCCGTGTCT--CACCA-AAT----G-ATGA-----AAAGCA-TGAAANGGAAGTGTAGAGATTGTAANTT-C-GGAGC--GGTTTCGCNAAACCGG--------------------GAAA----ATTCCG-TCATGGCAAA-ACCACTCGGAGTTGA--CCCTTGGATAAAA-TTCGCATATACTAG-ACAAGCTA-------AT-ATATGCACTAT
gi|1 : ATGAAAAATAAATAAAGACTAGGTAAA-TAA--C-TGA-TGTGT-TTATTCTGTTGAGGGC-GT-TACTGGCCGCG--GTGAA---T--TTGATAC-T-ACCG-TAGT-A----AA--AGGGCT---GCC-T--CACA-AAA-CAA---CAA--CAATAA---CAAGTCA-----CAAA-----TCA-AAT-CATCA----ATTCA-------AATC-----TTCAAAT--CACAAATAGTTCAAACA--------AATTTCCAAGATATGAAAAGT-TGTTCAAC-ACA--------TAAACA-------TGTTTCATGGCCACATGGTGGCCATGCGCAAAGTGCATATCCATATGTACA-AT--AGAAGTCACAGACTCATAATATC----TGTGCC-A-T-ATCAACGATATATG-----CA----A-----AATTCAC------AGCAAAATGGTTTAAAATTA----------TCCATTGGAGTTGG-GGTG-CGACGAAAGCGCCA--TACA-ACAG---G--GTTATCCA-GAG---TC-----ACC---GCGACGGATG--GTATATAGAGAGCTCACACC-ATGACTGCGACAGACAAGGACTG-CATTCGGTCTGA---AAAATAAACTACAGAG-AGCAGAATC----TGG---GTCCAA-AATTTGGGGAGGGAGGGAGGGAAATTTGTTTGGATATTTTTGGGGATGATAAA---TTTCCGTGTCT--CACCA-AGT----G-ATGA-----AAAGCA-TGAAACGGAAGTATAGGAATTGTAAATTAT-GGAGC--GGTTTCGCCAAACCGG--------------------GAAA----ATTCCG-TCAAGGCAAA-ACCACTCGGAGTTAACTCCCTTGGATAAAA-TTTGCATATACTAG-ACAAGCTA-------AT-ATATGCATTAT
gi|10 : AACAAATAAACACAGTTTATA-TA-----C-A-TGTAA-ATGTTTGGTTGATGAC-GT-TAATTGCCGATATGTGAAGGTT--CTCAGAC-T-A--A-TAAT-A----CAT-AGGGCC---GCC-T--CGCACAAA-CAAATTCAA--CAA--A---AAAGT-A-----CAA
gi|11 : tatccaagatatct-T--CACA-AAN-NNN---NNN--NNNNNN---NNNNNNN-----NNNN-----NNNNNNN-NNNNN----NNNNN-------NNNNNNNNNNNNNNNN--NNCAAATAGTTCGAACATATAAGCAAATTTCCAAGATATGAAAAGT-TGTTTAAC-ACA--------TTAGCA-------TTTTCCATGGCCACATGGTGGCCACGCgatgtgactgcatgtcaat
gi|12 : aagTAAGTAAGTACAAAGTAAA-TAGTTC-TGA-TGTTA-TCATTTTGTTGATGGT-GA-CACTGACCAGG--GC-AA---TTATTGAGGC-T-ACCT-TATT-AACTTAAT-GGG--------C-A--CATA-TAA-CAC---CAA--AAAATA---CA---TA-----CAAA-----Ta
gi|13 : tatcaaagatgcctgtCA-AT--ATATGATGCAGACTCTTGATAT----ATGTGCC-A-T-ATCAACGATATAAGGAGTTCA----A-----AATTCAC------AGCAAAATTGTTTGAAATTATTAGCATTCTTTCAAGAGATTTGG-GGTA-CGACGAAAGacgtatgt
gi|14 : AATATATAAGGACAAGGT--------TC-AGA-TGT---TTATTCTGTTGATGGC-GT-TACCGGCCGCG--GTGAAT--T--TTGAGGC-T-ACCG-TA
gi|15 : ccaagatgtctAA-TTGTTCACAA-GATGT-TTATTCTTCT-ATGGTTGT-TACTGGCCGCG--GTGAA---C--TT-AGGC-T-
gi|16 : aaactgcctcctgataaaaaccacTGCATATCCATATGTACA-AT--AGAAGTCAAAGACCCATGATATC----TGTGCC-A-T-ATCAACGAT
gi|17 : TGA--CCCTTGGATAAAA-TTTGCA-ATACTAA-ACAAACTA-------AT-ATATGCAC
gi|18 : gaaATAGATAAGGACAAGGT-AA-TAATTC-CGA-TG
gi|19 : ttatccaaaatgtctgCATTCTTCCATTGGACATAG-GGTC-TGACGAACACGCCACTTGCA-Ag
gi|2 : C---GCG-T--CACA-AAAACAT---CAAATCA-TAAGTTCAAGTCATAATTCAAG-----TCACAAT-TATCA----AATCA-------AATCGTATGTTCAAAT--CACAATTAGCTTCAATATATAAGCACATTTCTAAGATATGAAAAGT-TGTGCAAC-ACA--------TAAACA-------CATTCCATGGCCA-----------TGCGCAAAGTACATATCCATATGTACA-AT--AGAAGTCACAGACTCATGGTATT----TGTGCC-A-T-ATCAACGATATAAT-----CA----A-----AATCCAC------AGCAAAATGGTTTAAAATTATTAGCAATCTTCCATTGGAGTTGG-AGTG-CGACGAAAGCGCCA--TAAA-CCAG---G--GTTATCCC-GAG---TC-----ACC---ACGACGAATG--GTATATGTAGATCTCACACCA--G---GC------CT---AT------CCGGTCTGA---AAAATAAACTACAGAGCAGTAAAATG----AGG---G-----------AGGGAGGGAGGGAGGTGAATTTGCGTGGATATCTTTGGGGATGATAAT---TTTACGTGACT--CACCA-AAT----G-ATGA-----AAAGCATTGAAAT-GAAGTGTAGAAATTGTAAATTAT-GGAGC--GGTTTCGCTAAACCGG--------------------GAAA----ATTCCG-TCAAGGCAAA-GCCACTCGGAGTTAACTCCCTTGGATAAAA-TTTACATATACTAG-ACAAGCTA-------AT-ATATGCATTAT
gi|3 : tgcaacaaaatatgcaacggccattcaataggcttattgtgcaatgagtaagtgcaaatgcacaAGATACGAAAAGTCTGTGCAATGACAATCTGACATAAACACATTATATGTTCAATTGCCACA--GTGGCCATGCATCAGATGCATGCGTAAACGTGCATATCAATAAGACACAGACTCACGATATCTCAATCTGTT-A-TTATCAACGATATAAG-----CA----G-------TTCAC------AG-------GTTTGAA-TTAGTAGCACTCTTCCATTGGAGTTAG-TGTG-CGACGAAAGCGCCA--GAAA-GGAA---G--ATTATCCC-GGG---TC-----ACC---GCGACGGTTG--GTAAATGTACAGCT---ATCAATA---G-GACAGATTCGGAT---CA---AATCTGA---AAAATAAACTAAAGAC-AGCAGTATA----T---------AATGGTTTGGGGAGGGAAGGAAGGGA----------ATATTTTTTAACAGGATTTT---TTTCCGC-TCT--TATCA-AATATCAA-AT-A-----AAAGCC-TGGAAAGGAAGTGCAGAGATTGTAATTTCC-GAAGT--TGTTTTGCACAGCCGGAAAACATTTTGCAAAGCTGGGAAA----ATTCCA-TCATGGCAAA-ACCACTCGAA--TGA--CCCTTGGATAAAA-TTAACATATACTAG-ACAAACTAAT-----AT-ATATGCGCTATtattttcattataggga
gi|4 : gtctcaaagtgAAGACACAGATTTACGATATCGCAATTTGTT-AAT-ATCAGCGATATAAG-----CA----GTTCACAATTCAA------AGCCAAATGGTTTGAAATTAGTAGCACTCTTCCATTGGAGTTAG-GGTG-CGACGAAAGCTCCA---GAA-AGGGGAAG--ACTATTCC-CGGTTTTC-----ACC---GCG-CGGTTG--GTAAAGGTACAGCTtattacatatgtatatactgattacacacaaaatcaaagtaaataatgcaatgaaatatacaattaaaaaaa
gi|4 : atattaatTTGG-GGTGGCAACGAAAA-GCCG--CGCAGAAAG---GAAGACATCCGAGAG---TC-----ACCCCCGCGACGATTGCGATATAT-TACAGCTAGCA---ATA---GAG-CAGGTTCGGAT---CA---AATCTGA---AAA-TAAACTA-AG-G-ACTTGCACG----T---------AT-AATTTTGGGAGGGAGGGTGGGGA-----------TATTTTTTG--ACAGCAAACAGTTCTCGT-TCTAATACCACAAT----GTATAATCTTGAAAG-----AAAGGAAAGTGATGAGATTGTAATTT-C-GGAGT----TTTTGCACAGCC-G--------------------GAAA----ATTCCGTTCATatgcagggtttggggtggcaacgaaaagccgcgcagaaaggaagacatccgagagtcacccccgcgacgattgcgatatattacagctagcaatagagcaggttcggatcaaatctgaaaataaactaaggacttgcacgtataattttgggagggagggtggggatattttttgacagcaaacagttctcgttctaataccacaatgtataatcttgaaagaaaggaaagtgatgagattgtaatttcggagtttttgcacagccggaaaattccgttcattaaatttcaggagtttgtttttgccaaactgggacattccattccatatggtaaaccactggaatgacccttggataaaaattcgcatatactagaacaagctaatatgcact
gi|4 : atattaataagacacagatttacgatatcgcaatttgttaatatcagcgatataagcagttcacaattcaaagccaaatggtttgaaattagtagcactcttccattggagttagggtgcgacgaaagctccagaaaggggaagactattcccggttttcaccgcgcggttggtaaaggtacagctatgcagggtAATTT-CAGGAGTTTGTTTTTGCCAAACTGG--------------------GACATTCCATTCCA-T-ATGGTAAA--CCACT-GGAAT-GA--CCCTTGGATAAAAATTCGCATATACTAGAACAAGCTA----------ATATGCACTtaaatttcaggagtttgtttttgccaaactgggacattccattccatatggtaaaccactggaatgacccttggataaaaattcgcatatactagaacaagctaatatgcact
gi|5 : atattaataagacacagatttacgatatcgcaatttgttaatatcagcgatataagcagttcacaattcaaagccaaatggtttgaaattagtagcactcttccattggagttagggtgcgacgaaagctccagaaaggggaagactattcccggttttcaccgcgcggttggtaaaggtacagctatgcagggtttggggtggcaacgaaaagccgcgcagaaaggaagacatccgagagtcacccccgcgacgattgcgatatattacagctagcaatagagcaggttcggatcaaatctgaaaataaactaaggacttgcacgtataattttgggagggagggtggggatattttttgacagcaaacagttctcgttctaataccacaatgtataatcttgaaagaaaggaaagtgatgagattgtaatttcggagtttttgcacagccggaaaattccgttcattaATAAATA-GGACAAGGTAAA-TTGTTC-CGA-TGTTTATTATT-TGTTGATGCG-GT-TACTGGCCGCG--GTGAA---T--TTGAGGCTT-ACCG-TA-C-A----AAT-TGGGCT---GCC-TCGCACA-AAA-CAA---CGA--AAATCA---CAA---A-----CAAAATAGGTGACGGTCCATCAATAGACTCATTGTGTCAATGGTAGGCGCAAATGCCACAAA
gi|5 : atcaagatgtctgGAGATCAAAAGTCTGTGCAACGACA--------TAAACA-------TGTTCAATTGCCACATAGTGGCCATGCGCAAAGTGCAT-----TAT---TA-AT----AAGACACAGACTCACGATATCTCAATCTGTTAA-T-ATCAACGATATAAG-----CATTTCAC----AATTCAA------AGCCAAATGGTTTGAAATTAGTAGCACTCTTCCATT--AGTTGG-GGTG-CGACGAAAGCGCCACTTGCA-AGGG---cgccacaacacaacatcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatagtctcaaagtgagatcaaaagtctgtgcaacgacataaacatgttcaattgccacatagtggccatgcgcaaagtgcattattaataagacacagactcacgatatctcaatctgttaatatcaacgatataagcatttcacaattcaaagccaaatggtttgaaattagtagcactcttccattagttggggtgcgacgaaagcgccacttgcaagggcaat
gi|6 : atcaagatgtctgataaataggacaaggtaaattgttccgatgtttattatttgttgatgcggttactggccgcggtgaatttgaggcttaccgtacaaattgggctgcctcgcacaaaacaacgaaaatcacaaacaaaataggtgacggtccatcaatagactcattgtgtcaatggtaggcgcaaatgccacaaacgccacaacacaacatcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatagtctcaaagtATGAGAAATAAATAAAGGCTATGGAAACTAA----CGAGTGTGT-TTATTGT-TTGATGGC-ACGTACTG-CCGCG--GTGAA---T--TTGA-GC-TAACCGATAGCAA----AAA-AGGGCT---GCCTT--CACA-AAG-AGA---GAC--CACGCA---CAA---A-----CAAA-----CAACAAcaat
gi|6 : atccaagATC-A----AATCAAGGTCAAAG---T--CACA-AAT-CAAAT-CAGT-CAATT----CACGTCA-----CAAA-----TCAAAAT-CA--------ATCA-------AATCGTCAGTTCAAAT--CACAAATAGTTCGAACATATAAGCAAATTTCCAAGATAT--AAAGT-TGTTCAAC-ACA--------TAAACA-------TGTTCCATGGCCACATAGTGGCCATGCGCAAAGTGCATATCCATATGTACA-AT--AGGGGTCATAGACTCATGATATC----TGTGCC-A-T-ATCAACGAcaagcatgtgacgggccatcaataaagcattattgtgcaatgggtaagcgccaaatgcacaacgcggtcaccaaaacatcaaatcaaggtcaaagtcacaaatcaaatcagtcaattcacgtcacaaatcaaaatcaatcaaatcgtcagttcaaatcacaaatagttcgaacatataagcaaatttccaagatataaagttgttcaacacataaacatgttccatggccacatagtggccatgcgcaaagtgcatatccatatgtacaataggggtcatagactcatgatatctgtgccatatcaacga
gi|7 : atccaagatgagaaataaataaaggctatggaaactaacgagtgtgtttattgtttgatggcacgtactgccgcggtgaatttgagctaaccgatagcaaaaaagggctgccttcacaaagagagaccacgcacaaacaaacaacaacaagcatgtgacgggccatcaataaagcattattgtgcaatgggtaagcgccaaatgcacaacgcggtcaccaaaacTAGTTGTACTCTTCCACTAGAGTTTATGGTG-CGACGAAAGCGCC-----CA-CGAC---C--ATT-TCCA-GA----TCTGTAGACT---GCG-CCATCG--TTAAACGAGAAGCCCG-GTCAG-G---GC--CAGATTGGCGTTGACA-TCA--TTGAATGAAAGTA----ACAAAG-AGCAGTATGTATATGGTTCA--TAA-AA---GGGGA-GGAAGGAG---------------TATTTTTTTGGAAGACAAA---ATTCAGTA------------------G-AGG-------AAGCA-TGGA--GCATGTGC--------TAATTT-C-AGAGT--GGGTTTGTTAGATCGA--------------------GAAA----ATTCCG-GAATAATAAACACAAC----AATAGG--CCCACAGAT-AAA-TGCACATATACCAA-ACAAGCTATGACTGTATCATATGCAGTA
gi|8 : aaAGATACGAAAAGTCTGTGCAACGACA--------TAAACA-------TGTTCAATTGCCACATAGTGGCCATGCGCAAAGTGCATAT---------TA-AT----AAGACACAGACTCACGATATCTCAATCTGTTAA-T-ATCAACGCTATAGG-----C-----------AGTTCACAATCAAAGCCAAATGGTTTGAAATTAGTAGCACTCTTCCATTGGAGTTGG-GGTC-CGACGAAAGCGCCAGTTGCA-AGgtatt
gi|9 : aaagtgAAATAGTTCGAACATATAAGCAAATTTCCAAGATATGAAAAGT-TGTTCAAC-ACA--------TAAACA-------TGTTCCTTGGCCACATGGTGGCCATGCGCAAAATGCATATCCATATGTACA-AT--AGAAGTCACAGACTCATGATATC----TGTGCC-A-T-ATCAACGATATAAG-----CA----A-----AATTCAC------AGGAAAATGGTTT-AAATTAg
Alignments
lowQualScore : 111111 111 111111 11111111 11 1111 22222222222222222222222222222 11111 1111 2222222 11 2 2 11111111 1111111 4444 11111 2222222222 111111 222 111111 111 11111 111 66666666666666666666666666666666666666 111 7777777777777777777 66666666666666 1111 333333333333333333333333333333 1 1111 55555555555555555555 1111 11 11 3333333333
lowQualScore : 5 5 666666 5 444 5 0 5 5 77 666666 0 0 5 5 6 77777777 00 0000 0 5 66 5 5 66666666666666666666666666666 44444 0 4 8 2 7777 1 6666666 2 66 11 0 1 1 1 88888888 6666666 22 2 4 9999 1 1111 8 4 4 22222 5555555555 444444 3 0 2 4 4 111 4 333333 77 111 66666 111 7 99 1 1 1 99999999999999999999999999999999999999 444 3 0 5 0 8 1 0000000000000000000 0 33333333333333 0 3 6 5555 444444444444444444444444444444 88 44 77 1 3 888 2222 0 1 44444444444444444444 4444 6 2 11 55 6 3 88 6 2 6 1111111111
lowQualScore : . . ...... . ... . . . . .. ...... . . . . . ........ .. .... . . .. . . ............................. ..... . . . . .... . ....... . .. .. . . . . ........ ....... .. . . .... . .... . . . ..... .......... ...... . . . . . ... . ...... .. ... ..... ... . .. . . . ...................................... ... . . . . . . ................... . .............. . . . .... .............................. .. .. .. . . ... .... . . .................... .... . . .. .. . . .. . . . ..........
lowQualScore : 0 0 444444 0 111 3 7 7 7 99 777777 7 7 7 7 7 33333333 22 4444 7 0 99 0 0 00000000000000000000000000000 33333 2 3 0 8 0000 0 0000000 2 44 00 8 2 0 2 11111111 2222222 44 5 4 1111 0 9999 0 0 0 55555 9999999999 444444 0 2 5 0 0 888 4 333333 77 777 77777 777 3 22 0 0 0 00000000000000000000000000000000000000 000 8 8 0 8 0 0 6666666666666666666 8 00000000000000 6 2 4 4444 666666666666666666666666666666 66 66 44 4 3 777 3333 7 0 22222222222222222222 2222 7 5 88 88 4 5 33 7 2 7 7777777777
consensus : ATGAGAAATAAATAAGGACAAGGTAAA-TAGTTC-CGA-TGTGT-TTATTCTGTTGATGGC-GT-TACTGGCCGCG--GTGAA---T--TTGAGGC-T-ACCG-TANC-A----AAT-AGGGCC---GCC-T--CACA-AAA-CAA---CAA--CAATNA---CAAGTCA-----CAAA-----TCACAAT-CATCA----ANTCA-------AATCGTANGTTCAAAT--CACAAATAGTTCGAACATATAAGCAAATTTCCAAGATATGAAAAGTCTGTNCAACGACA--------TAAACA-------TGTTCCATGGCCACATGGTGGCCATGCGCAAAGTGCATATCCATATGTACA-AT--AGAAGNCACAGACTCACGATATC-CAATGTGCC-A-T-ATCAACGATATAAG-----CA----A-----AATTCAC------AGCAAAATGGTTTGAAATTAGTAGCACTCTTCCATTGGAGTTGG-GGTG-CGACGAAAGCGCCA--TGCA-AGAG---G--GTTATCCN-GAG---TC-----ACC---GCGACGGTTG--GTANATGTANAGCTCGCACCAATG---GCGACAGATTNGGATTG-CA-TCGGTCTGA---AAAATAAACTACAGAG-AGCAGNATGTG---GGT-C--AA-AATTTGGGGAGGGAGGGAGGGGAATTT--G--TGGATATTTTTTGGGACGATAAA---TTTCCGTGTCT--CACCA-AAT----G-ATGA-----AAAGCA-TGAAANGGAAGTGCAGAGATTGT-AATTT-C-GGAGC--GGTTTCGCNAAACCGG--------------------GAAA----ATTCCG-TCATGGCAAA-ACCACTCGGAGTTGA--CCCTTGGATAAAA-TTCGCATATACTAG-ACAAGCTA-------AT-ATATGCACTAT
Reference ( family-5271 ) : ATGAGAAATAAATAAGGACAAGGTAAA-TAGTTC-CGA-TGTGT-TTATTCTGTTGATGGC-GT-TACTGGCCGCG--GTGAA---T--TTGAGGC-T-ACCG-TANC-A----AAT-AGGGCC---GCC-T--CACA-AAA-CAA---CAA--CAATNA---CAAGTCA-----CAAA-----TCACAAT-CATCA----ANTCA-------AATCGTANGTTCAAAT--CACAAATAGTTCGAACATATAAGCAAATTTCCAAGATATGAAAAGTCTGTNCAACGACA--------TAAACA-------TGTTCCATGGCCACATGGTGGCCATGCGCAAAGTGCATATCCATATGTACA-AT--AGAAGNCACAGACTCACGATATC-CAATGTGCC-A-T-ATCAACGATATAAG-----CA----A-----AATTCAC------AGCAAAATGGTTTGAAATTAGTAGCACTCTTCCATTGGAGTTGG-GGTG-CGACGAAAGCGCCA--TGCA-AGAG---G--GTTATCCN-GAG---TC-----ACC---GCGACGGTTG--GTANATGTANAGCTCGCACCAATG---GCGACAGATTNGGATTG-CA-TCGGTCTGA---AAAATAAACTACAGAG-AGCAGNATGTG---GG-----AA-AATTTGGGGAGGGAGGGAGGGGAATTT--G--TGGATATTTTTTGGGACGATAAA---TTTCCGTGTCT--CACCA-AAT----G-ATGA-----AAAGCA-TGAAANGGAAGTGCAGAGATTGT-AATTT-C-GGAGC--GGTTTCGCNAAACCGG--------------------GAAA----ATTCCG-TCATGGCAAA-ACCACTCGGAGTTGA--CCCTTGGATAAAA-TTCGCATATACTAG-ACAAGCTA-------AT-ATATGCACTAT
gi|1 : ATGAAAAATAAATAAAGACTAGGTAAA-TAA--C-TGA-TGTGT-TTATTCTGTTGAGGGC-GT-TACTGGCCGCG--GTGAA---T--TTGATAC-T-ACCG-TAGT-A----AA--AGGGCT---GCC-T--CACA-AAA-CAA---CAA--CAATAA---CAAGTCA-----CAAA-----TCA-AAT-CATCA----ATTCA-------AATC-----TTCAAAT--CACAAATAGTTCAAACA--------AATTTCCAAGATATGAAAAGT-TGTTCAAC-ACA--------TAAACA-------TGTTTCATGGCCACATGGTGGCCATGCGCAAAGTGCATATCCATATGTACA-AT--AGAAGTCACAGACTCATAATATC----TGTGCC-A-T-ATCAACGATATATG-----CA----A-----AATTCAC------AGCAAAATGGTTTAAAATTA----------TCCATTGGAGTTGG-GGTG-CGACGAAAGCGCCA--TACA-ACAG---G--GTTATCCA-GAG---TC-----ACC---GCGACGGATG--GTATATAGAGAGCTCACACC-ATGACTGCGACAGACAAGGACTG-CATTCGGTCTGA---AAAATAAACTACAGAG-AGCAGAATCTG---GGTCC--AA-AATTTGGGGAGGGAGGGAGGGAAATTT--GTTTGGATATTTTTGGGGATGATAAA---TTTCCGTGTCT--CACCA-AGT----G-ATGA-----AAAGCA-TGAAACGGAAGTATAGGAATTGTAAATTA-T-GGAGC--GGTTTCGCCAAACCGG--------------------GAAA----ATTCCG-TCAAGGCAAA-ACCACTCGGAGTTAACTCCCTTGGATAAAA-TTTGCATATACTAG-ACAAGCTA-------AT-ATATGCATTAT
gi|10 : AACAAATAAACACAGTTTATA-TA-----C-A-TGTAA-ATGTTTGGTTGATGAC-GT-TAATTGCCGATATGTGAAGGTT--CTCAGAC-T-A--A-TAAT-A----CAT-AGGGCC---GCC-T--CGCACAAA-CAAATTCAA--CAA--A---AAAGT-A-----CAA
gi|11 : tatccaagatatct-T--CACA-AAN-NNN---NNN--NNNNNN---NNNNNNN-----NNNN-----NNNNNNN-NNNNN----NNNNN-------NNNNNNNNNNNNNNNN--NNCAAATAGTTCGAACATATAAGCAAATTTCCAAGATATGAAAAGT-TGTTTAAC-ACA--------TTAGCA-------TTTTCCATGGCCACATGGTGGCCACGCgatgtgactgcatgtcaat
gi|12 : aagTAAGTAAGTACAAAGTAAA-TAGTTC-TGA-TGTTA-TCATTTTGTTGATGGT-GA-CACTGACCAGG--GC-AA---TTATTGAGGC-T-ACCT-TATT-AACTTAAT-GGG--------C-A--CATA-TAA-CAC---CAA--AAAATA---CA---TA-----CAAA-----Ta
gi|13 : tatcaaagatgcctgtCA-AT--ATATGATGCAGACTCTTGATAT----ATGTGCC-A-T-ATCAACGATATAAGGAGTTCA----A-----AATTCAC------AGCAAAATTGTTTGAAATTATTAGCATTCTTTCAAGAGATTTGG-GGTA-CGACGAAAGacgtatgt
gi|14 : AATATATAAGGACAAGGT--------TC-AGA-TGT---TTATTCTGTTGATGGC-GT-TACCGGCCGCG--GTGAAT--T--TTGAGGC-T-ACCG-TA
gi|15 : ccaagatgtctAA-TTGTTCACAA-GATGT-TTATTCTTCT-ATGGTTGT-TACTGGCCGCG--GTGAA---C--TT-AGGC-T-
gi|16 : aaactgcctcctgataaaaaccacTGCATATCCATATGTACA-AT--AGAAGTCAAAGACCCATGATATC----TGTGCC-A-T-ATCAACGAT
gi|17 : TGA--CCCTTGGATAAAA-TTTGCA-ATACTAA-ACAAACTA-------AT-ATATGCAC
gi|18 : gaaATAGATAAGGACAAGGT-AA-TAATTC-CGA-TG
gi|19 : ttatccaaaatgtctgCATTCTTCCATTGGACATAG-GGTC-TGACGAACACGCCACTTGCA-Ag
gi|2 : C---GCG-T--CACA-AAAACAT---CAAATCA-TAAGTTCAAGTCATAATTCAAG-----TCACAAT-TATCA----AATCA-------AATCGTATGTTCAAAT--CACAATTAGCTTCAATATATAAGCACATTTCTAAGATATGAAAAGT-TGTGCAAC-ACA--------TAAACA-------CATTCCATGGCCA-----------TGCGCAAAGTACATATCCATATGTACA-AT--AGAAGTCACAGACTCATGGTATT----TGTGCC-A-T-ATCAACGATATAAT-----CA----A-----AATCCAC------AGCAAAATGGTTTAAAATTATTAGCAATCTTCCATTGGAGTTGG-AGTG-CGACGAAAGCGCCA--TAAA-CCAG---G--GTTATCCC-GAG---TC-----ACC---ACGACGAATG--GTATATGTAGATCTCACACCA--G---GC------CT---AT------CCGGTCTGA---AAAATAAACTACAGAGCAGTAAAATGAG---GG-----A--------GGGAGGGAGGGAGGTGAATTTGCG--TGGATATCTTTGGGGATGATAAT---TTTACGTGACT--CACCA-AAT----G-ATGA-----AAAGCATTGAAAT-GAAGTGTAGAAATTGTAAATTA-T-GGAGC--GGTTTCGCTAAACCGG--------------------GAAA----ATTCCG-TCAAGGCAAA-GCCACTCGGAGTTAACTCCCTTGGATAAAA-TTTACATATACTAG-ACAAGCTA-------AT-ATATGCATTAT
gi|3 : tgcaacaaaatatgcaacggccattcaataggcttattgtgcaatgagtaagtgcaaatgcacaAGATACGAAAAGTCTGTGCAATGACAATCTGACATAAACACATTATATGTTCAATTGCCACA--GTGGCCATGCATCAGATGCATGCGTAAACGTGCATATCAATAAGACACAGACTCACGATATCTCAATCTGTT-A-TTATCAACGATATAAG-----CA----G-------TTCAC------AG-------GTTTGAA-TTAGTAGCACTCTTCCATTGGAGTTAG-TGTG-CGACGAAAGCGCCA--GAAA-GGAA---G--ATTATCCC-GGG---TC-----ACC---GCGACGGTTG--GTAAATGTACAGCT---ATCAATA---G-GACAGATTCGGAT---CA---AATCTGA---AAAATAAACTAAAGAC-AGCAGTATAT-----------AATGGTTTGGGGAGGGAAGGAAGGGA------------ATATTTTTTAACAGGATTTT---TTTCCGC-TCT--TATCA-AATATCAA-AT-A-----AAAGCC-TGGAAAGGAAGTGCAGAGATTGT-AATTTCC-GAAGT--TGTTTTGCACAGCCGGAAAACATTTTGCAAAGCTGGGAAA----ATTCCA-TCATGGCAAA-ACCACTCGAA--TGA--CCCTTGGATAAAA-TTAACATATACTAG-ACAAACTAAT-----AT-ATATGCGCTATtattttcattataggga
gi|4 : gtctcaaagtgAAGACACAGATTTACGATATCGCAATTTGTT-AAT-ATCAGCGATATAAG-----CA----GTTCACAATTCAA------AGCCAAATGGTTTGAAATTAGTAGCACTCTTCCATTGGAGTTAG-GGTG-CGACGAAAGCTCCA---GAA-AGGGGAAG--ACTATTCC-CGGTTTTC-----ACC---GCG-CGGTTG--GTAAAGGTACAGCTtattacatatgtatatactgattacacacaaaatcaaagtaaataatgcaatgaaatatacaattaaaaaaa
gi|4 : atattaatTTGG-GGTGGCAACGAAAA-GCCG--CGCAGAAAG---GAAGACATCCGAGAG---TC-----ACCCCCGCGACGATTGCGATATAT-TACAGCTAGCA---ATA---GAG-CAGGTTCGGAT---CA---AATCTGA---AAA-TAAACTA-AG-G-ACTTGCACGT-----------AT-AATTTTGGGAGGGAGGG---------T--G--GGGATATTTTTTG--ACAGCAAACAGTTCTCGT-TCTAATACCACAAT----GTATAATCTTGAAAG-----AAAGGAAAGTGATGAGATTGT-AATTT-C-GGAGT----TTTTGCACAGCC-G--------------------GAAA----ATTCCGTTCATatgcagggtttggggtggcaacgaaaagccgcgcagaaaggaagacatccgagagtcacccccgcgacgattgcgatatattacagctagcaatagagcaggttcggatcaaatctgaaaataaactaaggacttgcacgtataattttgggagggagggtggggatattttttgacagcaaacagttctcgttctaataccacaatgtataatcttgaaagaaaggaaagtgatgagattgtaatttcggagtttttgcacagccggaaaattccgttcattaaatttcaggagtttgtttttgccaaactgggacattccattccatatggtaaaccactggaatgacccttggataaaaattcgcatatactagaacaagctaatatgcact
gi|4 : atattaataagacacagatttacgatatcgcaatttgttaatatcagcgatataagcagttcacaattcaaagccaaatggtttgaaattagtagcactcttccattggagttagggtgcgacgaaagctccagaaaggggaagactattcccggttttcaccgcgcggttggtaaaggtacagctatgcagggt-AATTT-CAGGAGTTTGTTTTTGCCAAACTGG--------------------GACATTCCATTCCA-T-ATGGTAAA--CCACT-GGAAT-GA--CCCTTGGATAAAAATTCGCATATACTAGAACAAGCTA----------ATATGCACTtaaatttcaggagtttgtttttgccaaactgggacattccattccatatggtaaaccactggaatgacccttggataaaaattcgcatatactagaacaagctaatatgcact
gi|5 : atattaataagacacagatttacgatatcgcaatttgttaatatcagcgatataagcagttcacaattcaaagccaaatggtttgaaattagtagcactcttccattggagttagggtgcgacgaaagctccagaaaggggaagactattcccggttttcaccgcgcggttggtaaaggtacagctatgcagggtttggggtggcaacgaaaagccgcgcagaaaggaagacatccgagagtcacccccgcgacgattgcgatatattacagctagcaatagagcaggttcggatcaaatctgaaaataaactaaggacttgcacgtataattttgggagggagggtggggatattttttgacagcaaacagttctcgttctaataccacaatgtataatcttgaaagaaaggaaagtgatgagattgtaatttcggagtttttgcacagccggaaaattccgttcattaATAAATA-GGACAAGGTAAA-TTGTTC-CGA-TGTTTATTATT-TGTTGATGCG-GT-TACTGGCCGCG--GTGAA---T--TTGAGGCTT-ACCG-TA-C-A----AAT-TGGGCT---GCC-TCGCACA-AAA-CAA---CGA--AAATCA---CAA---A-----CAAAATAGGTGACGGTCCATCAATAGACTCATTGTGTCAATGGTAGGCGCAAATGCCACAAA
gi|5 : atcaagatgtctgGAGATCAAAAGTCTGTGCAACGACA--------TAAACA-------TGTTCAATTGCCACATAGTGGCCATGCGCAAAGTGCAT-----TAT---TA-AT----AAGACACAGACTCACGATATCTCAATCTGTTAA-T-ATCAACGATATAAG-----CATTTCAC----AATTCAA------AGCCAAATGGTTTGAAATTAGTAGCACTCTTCCATT--AGTTGG-GGTG-CGACGAAAGCGCCACTTGCA-AGGG---cgccacaacacaacatcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatagtctcaaagtgagatcaaaagtctgtgcaacgacataaacatgttcaattgccacatagtggccatgcgcaaagtgcattattaataagacacagactcacgatatctcaatctgttaatatcaacgatataagcatttcacaattcaaagccaaatggtttgaaattagtagcactcttccattagttggggtgcgacgaaagcgccacttgcaagggcaat
gi|6 : atcaagatgtctgataaataggacaaggtaaattgttccgatgtttattatttgttgatgcggttactggccgcggtgaatttgaggcttaccgtacaaattgggctgcctcgcacaaaacaacgaaaatcacaaacaaaataggtgacggtccatcaatagactcattgtgtcaatggtaggcgcaaatgccacaaacgccacaacacaacatcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatagtctcaaagtATGAGAAATAAATAAAGGCTATGGAAACTAA----CGAGTGTGT-TTATTGT-TTGATGGC-ACGTACTG-CCGCG--GTGAA---T--TTGA-GC-TAACCGATAGCAA----AAA-AGGGCT---GCCTT--CACA-AAG-AGA---GAC--CACGCA---CAA---A-----CAAA-----CAACAAcaat
gi|6 : atccaagATC-A----AATCAAGGTCAAAG---T--CACA-AAT-CAAAT-CAGT-CAATT----CACGTCA-----CAAA-----TCAAAAT-CA--------ATCA-------AATCGTCAGTTCAAAT--CACAAATAGTTCGAACATATAAGCAAATTTCCAAGATAT--AAAGT-TGTTCAAC-ACA--------TAAACA-------TGTTCCATGGCCACATAGTGGCCATGCGCAAAGTGCATATCCATATGTACA-AT--AGGGGTCATAGACTCATGATATC----TGTGCC-A-T-ATCAACGAcaagcatgtgacgggccatcaataaagcattattgtgcaatgggtaagcgccaaatgcacaacgcggtcaccaaaacatcaaatcaaggtcaaagtcacaaatcaaatcagtcaattcacgtcacaaatcaaaatcaatcaaatcgtcagttcaaatcacaaatagttcgaacatataagcaaatttccaagatataaagttgttcaacacataaacatgttccatggccacatagtggccatgcgcaaagtgcatatccatatgtacaataggggtcatagactcatgatatctgtgccatatcaacga
gi|7 : atccaagatgagaaataaataaaggctatggaaactaacgagtgtgtttattgtttgatggcacgtactgccgcggtgaatttgagctaaccgatagcaaaaaagggctgccttcacaaagagagaccacgcacaaacaaacaacaacaagcatgtgacgggccatcaataaagcattattgtgcaatgggtaagcgccaaatgcacaacgcggtcaccaaaacTAGTTGTACTCTTCCACTAGAGTTTATGGTG-CGACGAAAGCGCC-----CA-CGAC---C--ATT-TCCA-GA----TCTGTAGACT---GCG-CCATCG--TTAAACGAGAAGCCCG-GTCAG-G---GC--CAGATTGGCGTTGACA-TCA--TTGAATGAAAGTA----ACAAAG-AGCAGTATGTATATGGTTCATAA-AA---GGGGA-GGAAGGAG-----------------TATTTTTTTGGAAGACAAA---ATTCAGTA------------------G-AGG-------AAGCA-TGGA--GCATGTGC--------T-AATTT-C-AGAGT--GGGTTTGTTAGATCGA--------------------GAAA----ATTCCG-GAATAATAAACACAAC----AATAGG--CCCACAGAT-AAA-TGCACATATACCAA-ACAAGCTATGACTGTATCATATGCAGTA
gi|8 : aaAGATACGAAAAGTCTGTGCAACGACA--------TAAACA-------TGTTCAATTGCCACATAGTGGCCATGCGCAAAGTGCATAT---------TA-AT----AAGACACAGACTCACGATATCTCAATCTGTTAA-T-ATCAACGCTATAGG-----C-----------AGTTCACAATCAAAGCCAAATGGTTTGAAATTAGTAGCACTCTTCCATTGGAGTTGG-GGTC-CGACGAAAGCGCCAGTTGCA-AGgtatt
gi|9 : aaagtgAAATAGTTCGAACATATAAGCAAATTTCCAAGATATGAAAAGT-TGTTCAAC-ACA--------TAAACA-------TGTTCCTTGGCCACATGGTGGCCATGCGCAAAATGCATATCCATATGTACA-AT--AGAAGTCACAGACTCATGATATC----TGTGCC-A-T-ATCAACGATATAAG-----CA----A-----AATTCAC------AGGAAAATGGTTT-AAATTAg
Alignments
lowQualScore : 111111 111 111111 11111111 11 1111 22222222222222222222222222222 11111 1111 2222222 11 2 2 11111111 1111111 4444 11111 2222222222 111111 222 111111 111 11111 111 66666666666666666666666666666666666666 111 777777777777777777777 66666666666666 1111 333333333333333333333333333333 1 1111 55555555555555555555 1111 11 11 3333333333
lowQualScore : 5 5 666666 5 444 5 0 5 5 77 666666 0 0 5 5 6 77777777 00 0000 0 5 66 5 5 66666666666666666666666666666 44444 0 4 8 2 7777 1 6666666 2 66 11 0 1 1 1 88888888 6666666 22 2 4 9999 1 1111 8 4 4 22222 5555555555 444444 3 0 2 4 4 111 4 333333 77 111 66666 111 7 99 1 1 1 99999999999999999999999999999999999999 444 3 0 5 0 8 1 111111111111111111111 0 33333333333333 0 3 6 5555 444444444444444444444444444444 88 44 77 1 3 888 2222 0 1 44444444444444444444 4444 6 2 11 55 6 3 88 6 2 6 1111111111
lowQualScore : . . ...... . ... . . . . .. ...... . . . . . ........ .. .... . . .. . . ............................. ..... . . . . .... . ....... . .. .. . . . . ........ ....... .. . . .... . .... . . . ..... .......... ...... . . . . . ... . ...... .. ... ..... ... . .. . . . ...................................... ... . . . . . . ..................... . .............. . . . .... .............................. .. .. .. . . ... .... . . .................... .... . . .. .. . . .. . . . ..........
lowQualScore : 0 0 444444 0 111 3 7 7 7 99 777777 7 7 7 7 7 33333333 22 4444 7 0 99 0 0 00000000000000000000000000000 33333 2 3 0 8 0000 0 0000000 2 44 00 8 2 0 2 11111111 2222222 44 5 4 1111 0 9999 0 0 0 55555 9999999999 444444 0 2 5 0 0 888 4 333333 77 777 77777 777 3 22 0 0 0 00000000000000000000000000000000000000 000 8 8 0 8 0 0 888888888888888888888 8 00000000000000 6 2 4 4444 666666666666666666666666666666 66 66 44 4 3 777 3333 7 0 22222222222222222222 2222 7 5 88 88 4 5 33 7 2 7 7777777777
consensus : ATGAGAAATAAATAAGGACAAGGTAAA-TAGTTC-CGA-TGTGT-TTATTCTGTTGATGGC-GT-TACTGGCCGCG--GTGAA---T--TTGAGGC-T-ACCG-TANC-A----AAT-AGGGCC---GCC-T--CACA-AAA-CAA---CAA--CAATNA---CAAGTCA-----CAAA-----TCACAAT-CATCA----ANTCA-------AATCGTANGTTCAAAT--CACAAATAGTTCGAACATATAAGCAAATTTCCAAGATATGAAAAGTCTGTNCAACGACA--------TAAACA-------TGTTCCATGGCCACATGGTGGCCATGCGCAAAGTGCATATCCATATGTACA-AT--AGAAGNCACAGACTCACGATATC-CAATGTGCC-A-T-ATCAACGATATAAG-----CA----A-----AATTCAC------AGCAAAATGGTTTGAAATTAGTAGCACTCTTCCATTGGAGTTGG-GGTG-CGACGAAAGCGCCA--TGCA-AGAG---G--GTTATCCN-GAG---TC-----ACC---GCGACGGTTG--GTANATGTANAGCTCGCACCAATG---GCGACAGATTNGGATTG-CA-TCGGTCTGA---AAAATAAACTACAGAG-AGCAGNATG----TGGGT-C--AA-AATTTGGGGAGGGAGGGAGGGGAATTT--G--TGGATATTTTTTGGGACGATAAA---TTTCCGTGTCT--CACCA-AAT----G-ATGA-----AAAGCA-TGAAANGGAAGTGCAGAGATTGT-AATTT-C-GGAGC--GGTTTCGCNAAACCGG--------------------GAAA----ATTCCG-TCATGGCAAA-ACCACTCGGAGTTGA--CCCTTGGATAAAA-TTCGCATATACTAG-ACAAGCTA-------AT-ATATGCACTAT
Reference ( family-5271 ) : ATGAGAAATAAATAAGGACAAGGTAAA-TAGTTC-CGA-TGTGT-TTATTCTGTTGATGGC-GT-TACTGGCCGCG--GTGAA---T--TTGAGGC-T-ACCG-TANC-A----AAT-AGGGCC---GCC-T--CACA-AAA-CAA---CAA--CAATNA---CAAGTCA-----CAAA-----TCACAAT-CATCA----ANTCA-------AATCGTANGTTCAAAT--CACAAATAGTTCGAACATATAAGCAAATTTCCAAGATATGAAAAGTCTGTNCAACGACA--------TAAACA-------TGTTCCATGGCCACATGGTGGCCATGCGCAAAGTGCATATCCATATGTACA-AT--AGAAGNCACAGACTCACGATATC-CAATGTGCC-A-T-ATCAACGATATAAG-----CA----A-----AATTCAC------AGCAAAATGGTTTGAAATTAGTAGCACTCTTCCATTGGAGTTGG-GGTG-CGACGAAAGCGCCA--TGCA-AGAG---G--GTTATCCN-GAG---TC-----ACC---GCGACGGTTG--GTANATGTANAGCTCGCACCAATG---GCGACAGATTNGGATTG-CA-TCGGTCTGA---AAAATAAACTACAGAG-AGCAGNATG----TGGGT-C--AA-AATTTGGGGAGGGAGGGAGGGGAATTT--G--TGGATATTTTTTGGGACGATAAA---TTTCCGTGTCT--CACCA-AAT----G-ATGA-----AAAGCA-TGAAANGGAAGTGCAGAGATTGT-AATTT-C-GGAGC--GGTTTCGCNAAACCGG--------------------GAAA----ATTCCG-TCATGGCAAA-ACCACTCGGAGTTGA--CCCTTGGATAAAA-TTCGCATATACTAG-ACAAGCTA-------AT-ATATGCACTAT
gi|1 : ATGAAAAATAAATAAAGACTAGGTAAA-TAA--C-TGA-TGTGT-TTATTCTGTTGAGGGC-GT-TACTGGCCGCG--GTGAA---T--TTGATAC-T-ACCG-TAGT-A----AA--AGGGCT---GCC-T--CACA-AAA-CAA---CAA--CAATAA---CAAGTCA-----CAAA-----TCA-AAT-CATCA----ATTCA-------AATC-----TTCAAAT--CACAAATAGTTCAAACA--------AATTTCCAAGATATGAAAAGT-TGTTCAAC-ACA--------TAAACA-------TGTTTCATGGCCACATGGTGGCCATGCGCAAAGTGCATATCCATATGTACA-AT--AGAAGTCACAGACTCATAATATC----TGTGCC-A-T-ATCAACGATATATG-----CA----A-----AATTCAC------AGCAAAATGGTTTAAAATTA----------TCCATTGGAGTTGG-GGTG-CGACGAAAGCGCCA--TACA-ACAG---G--GTTATCCA-GAG---TC-----ACC---GCGACGGATG--GTATATAGAGAGCTCACACC-ATGACTGCGACAGACAAGGACTG-CATTCGGTCTGA---AAAATAAACTACAGAG-AGCAGAATC----TGGGTCC--AA-AATTTGGGGAGGGAGGGAGGGAAATTT--GTTTGGATATTTTTGGGGATGATAAA---TTTCCGTGTCT--CACCA-AGT----G-ATGA-----AAAGCA-TGAAACGGAAGTATAGGAATTGTAAATTA-T-GGAGC--GGTTTCGCCAAACCGG--------------------GAAA----ATTCCG-TCAAGGCAAA-ACCACTCGGAGTTAACTCCCTTGGATAAAA-TTTGCATATACTAG-ACAAGCTA-------AT-ATATGCATTAT
gi|10 : AACAAATAAACACAGTTTATA-TA-----C-A-TGTAA-ATGTTTGGTTGATGAC-GT-TAATTGCCGATATGTGAAGGTT--CTCAGAC-T-A--A-TAAT-A----CAT-AGGGCC---GCC-T--CGCACAAA-CAAATTCAA--CAA--A---AAAGT-A-----CAA
gi|11 : tatccaagatatct-T--CACA-AAN-NNN---NNN--NNNNNN---NNNNNNN-----NNNN-----NNNNNNN-NNNNN----NNNNN-------NNNNNNNNNNNNNNNN--NNCAAATAGTTCGAACATATAAGCAAATTTCCAAGATATGAAAAGT-TGTTTAAC-ACA--------TTAGCA-------TTTTCCATGGCCACATGGTGGCCACGCgatgtgactgcatgtcaat
gi|12 : aagTAAGTAAGTACAAAGTAAA-TAGTTC-TGA-TGTTA-TCATTTTGTTGATGGT-GA-CACTGACCAGG--GC-AA---TTATTGAGGC-T-ACCT-TATT-AACTTAAT-GGG--------C-A--CATA-TAA-CAC---CAA--AAAATA---CA---TA-----CAAA-----Ta
gi|13 : tatcaaagatgcctgtCA-AT--ATATGATGCAGACTCTTGATAT----ATGTGCC-A-T-ATCAACGATATAAGGAGTTCA----A-----AATTCAC------AGCAAAATTGTTTGAAATTATTAGCATTCTTTCAAGAGATTTGG-GGTA-CGACGAAAGacgtatgt
gi|14 : AATATATAAGGACAAGGT--------TC-AGA-TGT---TTATTCTGTTGATGGC-GT-TACCGGCCGCG--GTGAAT--T--TTGAGGC-T-ACCG-TA
gi|15 : ccaagatgtctAA-TTGTTCACAA-GATGT-TTATTCTTCT-ATGGTTGT-TACTGGCCGCG--GTGAA---C--TT-AGGC-T-
gi|16 : aaactgcctcctgataaaaaccacTGCATATCCATATGTACA-AT--AGAAGTCAAAGACCCATGATATC----TGTGCC-A-T-ATCAACGAT
gi|17 : TGA--CCCTTGGATAAAA-TTTGCA-ATACTAA-ACAAACTA-------AT-ATATGCAC
gi|18 : gaaATAGATAAGGACAAGGT-AA-TAATTC-CGA-TG
gi|19 : ttatccaaaatgtctgCATTCTTCCATTGGACATAG-GGTC-TGACGAACACGCCACTTGCA-Ag
gi|2 : C---GCG-T--CACA-AAAACAT---CAAATCA-TAAGTTCAAGTCATAATTCAAG-----TCACAAT-TATCA----AATCA-------AATCGTATGTTCAAAT--CACAATTAGCTTCAATATATAAGCACATTTCTAAGATATGAAAAGT-TGTGCAAC-ACA--------TAAACA-------CATTCCATGGCCA-----------TGCGCAAAGTACATATCCATATGTACA-AT--AGAAGTCACAGACTCATGGTATT----TGTGCC-A-T-ATCAACGATATAAT-----CA----A-----AATCCAC------AGCAAAATGGTTTAAAATTATTAGCAATCTTCCATTGGAGTTGG-AGTG-CGACGAAAGCGCCA--TAAA-CCAG---G--GTTATCCC-GAG---TC-----ACC---ACGACGAATG--GTATATGTAGATCTCACACCA--G---GC------CT---AT------CCGGTCTGA---AAAATAAACTACAGAGCAGTAAAATG----AGGG-------------AGGGAGGGAGGGAGGTGAATTTGCG--TGGATATCTTTGGGGATGATAAT---TTTACGTGACT--CACCA-AAT----G-ATGA-----AAAGCATTGAAAT-GAAGTGTAGAAATTGTAAATTA-T-GGAGC--GGTTTCGCTAAACCGG--------------------GAAA----ATTCCG-TCAAGGCAAA-GCCACTCGGAGTTAACTCCCTTGGATAAAA-TTTACATATACTAG-ACAAGCTA-------AT-ATATGCATTAT
gi|3 : tgcaacaaaatatgcaacggccattcaataggcttattgtgcaatgagtaagtgcaaatgcacaAGATACGAAAAGTCTGTGCAATGACAATCTGACATAAACACATTATATGTTCAATTGCCACA--GTGGCCATGCATCAGATGCATGCGTAAACGTGCATATCAATAAGACACAGACTCACGATATCTCAATCTGTT-A-TTATCAACGATATAAG-----CA----G-------TTCAC------AG-------GTTTGAA-TTAGTAGCACTCTTCCATTGGAGTTAG-TGTG-CGACGAAAGCGCCA--GAAA-GGAA---G--ATTATCCC-GGG---TC-----ACC---GCGACGGTTG--GTAAATGTACAGCT---ATCAATA---G-GACAGATTCGGAT---CA---AATCTGA---AAAATAAACTAAAGAC-AGCAGTATA----T--------AATGGTTTGGGGAGGGAAGGAAGGGA------------ATATTTTTTAACAGGATTTT---TTTCCGC-TCT--TATCA-AATATCAA-AT-A-----AAAGCC-TGGAAAGGAAGTGCAGAGATTGT-AATTTCC-GAAGT--TGTTTTGCACAGCCGGAAAACATTTTGCAAAGCTGGGAAA----ATTCCA-TCATGGCAAA-ACCACTCGAA--TGA--CCCTTGGATAAAA-TTAACATATACTAG-ACAAACTAAT-----AT-ATATGCGCTATtattttcattataggga
gi|4 : gtctcaaagtgAAGACACAGATTTACGATATCGCAATTTGTT-AAT-ATCAGCGATATAAG-----CA----GTTCACAATTCAA------AGCCAAATGGTTTGAAATTAGTAGCACTCTTCCATTGGAGTTAG-GGTG-CGACGAAAGCTCCA---GAA-AGGGGAAG--ACTATTCC-CGGTTTTC-----ACC---GCG-CGGTTG--GTAAAGGTACAGCTtattacatatgtatatactgattacacacaaaatcaaagtaaataatgcaatgaaatatacaattaaaaaaa
gi|4 : atattaatTTGG-GGTGGCAACGAAAA-GCCG--CGCAGAAAG---GAAGACATCCGAGAG---TC-----ACCCCCGCGACGATTGCGATATAT-TACAGCTAGCA---ATA---GAG-CAGGTTCGGAT---CA---AATCTGA---AAA-TAAACTA-AG-G-ACTTGCACG----T--------AT-AATTTTGGGAGGGAGGG---------T--G--GGGATATTTTTTG--ACAGCAAACAGTTCTCGT-TCTAATACCACAAT----GTATAATCTTGAAAG-----AAAGGAAAGTGATGAGATTGT-AATTT-C-GGAGT----TTTTGCACAGCC-G--------------------GAAA----ATTCCGTTCATatgcagggtttggggtggcaacgaaaagccgcgcagaaaggaagacatccgagagtcacccccgcgacgattgcgatatattacagctagcaatagagcaggttcggatcaaatctgaaaataaactaaggacttgcacgtataattttgggagggagggtggggatattttttgacagcaaacagttctcgttctaataccacaatgtataatcttgaaagaaaggaaagtgatgagattgtaatttcggagtttttgcacagccggaaaattccgttcattaaatttcaggagtttgtttttgccaaactgggacattccattccatatggtaaaccactggaatgacccttggataaaaattcgcatatactagaacaagctaatatgcact
gi|4 : atattaataagacacagatttacgatatcgcaatttgttaatatcagcgatataagcagttcacaattcaaagccaaatggtttgaaattagtagcactcttccattggagttagggtgcgacgaaagctccagaaaggggaagactattcccggttttcaccgcgcggttggtaaaggtacagctatgcagggt-AATTT-CAGGAGTTTGTTTTTGCCAAACTGG--------------------GACATTCCATTCCA-T-ATGGTAAA--CCACT-GGAAT-GA--CCCTTGGATAAAAATTCGCATATACTAGAACAAGCTA----------ATATGCACTtaaatttcaggagtttgtttttgccaaactgggacattccattccatatggtaaaccactggaatgacccttggataaaaattcgcatatactagaacaagctaatatgcact
gi|5 : atattaataagacacagatttacgatatcgcaatttgttaatatcagcgatataagcagttcacaattcaaagccaaatggtttgaaattagtagcactcttccattggagttagggtgcgacgaaagctccagaaaggggaagactattcccggttttcaccgcgcggttggtaaaggtacagctatgcagggtttggggtggcaacgaaaagccgcgcagaaaggaagacatccgagagtcacccccgcgacgattgcgatatattacagctagcaatagagcaggttcggatcaaatctgaaaataaactaaggacttgcacgtataattttgggagggagggtggggatattttttgacagcaaacagttctcgttctaataccacaatgtataatcttgaaagaaaggaaagtgatgagattgtaatttcggagtttttgcacagccggaaaattccgttcattaATAAATA-GGACAAGGTAAA-TTGTTC-CGA-TGTTTATTATT-TGTTGATGCG-GT-TACTGGCCGCG--GTGAA---T--TTGAGGCTT-ACCG-TA-C-A----AAT-TGGGCT---GCC-TCGCACA-AAA-CAA---CGA--AAATCA---CAA---A-----CAAAATAGGTGACGGTCCATCAATAGACTCATTGTGTCAATGGTAGGCGCAAATGCCACAAA
gi|5 : atcaagatgtctgGAGATCAAAAGTCTGTGCAACGACA--------TAAACA-------TGTTCAATTGCCACATAGTGGCCATGCGCAAAGTGCAT-----TAT---TA-AT----AAGACACAGACTCACGATATCTCAATCTGTTAA-T-ATCAACGATATAAG-----CATTTCAC----AATTCAA------AGCCAAATGGTTTGAAATTAGTAGCACTCTTCCATT--AGTTGG-GGTG-CGACGAAAGCGCCACTTGCA-AGGG---cgccacaacacaacatcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatagtctcaaagtgagatcaaaagtctgtgcaacgacataaacatgttcaattgccacatagtggccatgcgcaaagtgcattattaataagacacagactcacgatatctcaatctgttaatatcaacgatataagcatttcacaattcaaagccaaatggtttgaaattagtagcactcttccattagttggggtgcgacgaaagcgccacttgcaagggcaat
gi|6 : atcaagatgtctgataaataggacaaggtaaattgttccgatgtttattatttgttgatgcggttactggccgcggtgaatttgaggcttaccgtacaaattgggctgcctcgcacaaaacaacgaaaatcacaaacaaaataggtgacggtccatcaatagactcattgtgtcaatggtaggcgcaaatgccacaaacgccacaacacaacatcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatagtctcaaagtATGAGAAATAAATAAAGGCTATGGAAACTAA----CGAGTGTGT-TTATTGT-TTGATGGC-ACGTACTG-CCGCG--GTGAA---T--TTGA-GC-TAACCGATAGCAA----AAA-AGGGCT---GCCTT--CACA-AAG-AGA---GAC--CACGCA---CAA---A-----CAAA-----CAACAAcaat
gi|6 : atccaagATC-A----AATCAAGGTCAAAG---T--CACA-AAT-CAAAT-CAGT-CAATT----CACGTCA-----CAAA-----TCAAAAT-CA--------ATCA-------AATCGTCAGTTCAAAT--CACAAATAGTTCGAACATATAAGCAAATTTCCAAGATAT--AAAGT-TGTTCAAC-ACA--------TAAACA-------TGTTCCATGGCCACATAGTGGCCATGCGCAAAGTGCATATCCATATGTACA-AT--AGGGGTCATAGACTCATGATATC----TGTGCC-A-T-ATCAACGAcaagcatgtgacgggccatcaataaagcattattgtgcaatgggtaagcgccaaatgcacaacgcggtcaccaaaacatcaaatcaaggtcaaagtcacaaatcaaatcagtcaattcacgtcacaaatcaaaatcaatcaaatcgtcagttcaaatcacaaatagttcgaacatataagcaaatttccaagatataaagttgttcaacacataaacatgttccatggccacatagtggccatgcgcaaagtgcatatccatatgtacaataggggtcatagactcatgatatctgtgccatatcaacga
gi|7 : atccaagatgagaaataaataaaggctatggaaactaacgagtgtgtttattgtttgatggcacgtactgccgcggtgaatttgagctaaccgatagcaaaaaagggctgccttcacaaagagagaccacgcacaaacaaacaacaacaagcatgtgacgggccatcaataaagcattattgtgcaatgggtaagcgccaaatgcacaacgcggtcaccaaaacTAGTTGTACTCTTCCACTAGAGTTTATGGTG-CGACGAAAGCGCC-----CA-CGAC---C--ATT-TCCA-GA----TCTGTAGACT---GCG-CCATCG--TTAAACGAGAAGCCCG-GTCAG-G---GC--CAGATTGGCGTTGACA-TCA--TTGAATGAAAGTA----ACAAAG-AGCAGTATGTATATGGTT-CATAA-AA---GGGGA-GGAAGGAG-----------------TATTTTTTTGGAAGACAAA---ATTCAGTA------------------G-AGG-------AAGCA-TGGA--GCATGTGC--------T-AATTT-C-AGAGT--GGGTTTGTTAGATCGA--------------------GAAA----ATTCCG-GAATAATAAACACAAC----AATAGG--CCCACAGAT-AAA-TGCACATATACCAA-ACAAGCTATGACTGTATCATATGCAGTA
gi|8 : aaAGATACGAAAAGTCTGTGCAACGACA--------TAAACA-------TGTTCAATTGCCACATAGTGGCCATGCGCAAAGTGCATAT---------TA-AT----AAGACACAGACTCACGATATCTCAATCTGTTAA-T-ATCAACGCTATAGG-----C-----------AGTTCACAATCAAAGCCAAATGGTTTGAAATTAGTAGCACTCTTCCATTGGAGTTGG-GGTC-CGACGAAAGCGCCAGTTGCA-AGgtatt
gi|9 : aaagtgAAATAGTTCGAACATATAAGCAAATTTCCAAGATATGAAAAGT-TGTTCAAC-ACA--------TAAACA-------TGTTCCTTGGCCACATGGTGGCCATGCGCAAAATGCATATCCATATGTACA-AT--AGAAGTCACAGACTCATGATATC----TGTGCC-A-T-ATCAACGATATAAG-----CA----A-----AATTCAC------AGGAAAATGGTTT-AAATTAg
Alignments
lowQualScore : 111111 111 111111 11111111 11 1111 22222222222222222222222222222 11111 1111 2222222 11 2 2 11111111 1111111 4444 11111 2222222222 111111 222 111111 111 11111 111 66666666666666666666666666666666666666 111 777777777777777777777 66666666666666 1111 333333333333333333333333333333 1 1111 55555555555555555555 1111 11 11 3333333333
lowQualScore : 5 5 666666 5 444 5 0 5 5 77 666666 0 0 5 5 6 77777777 00 0000 0 5 66 5 5 66666666666666666666666666666 44444 0 4 8 2 7777 1 6666666 2 66 11 0 1 1 1 88888888 6666666 22 2 4 9999 1 1111 8 4 4 22222 5555555555 444444 3 0 2 4 4 111 4 333333 77 111 66666 111 7 99 1 1 1 99999999999999999999999999999999999999 444 3 0 5 0 8 1 111111111111111111111 0 33333333333333 0 3 6 5555 444444444444444444444444444444 88 44 77 1 3 888 2222 0 1 44444444444444444444 4444 6 2 11 55 6 3 88 6 2 6 1111111111
lowQualScore : . . ...... . ... . . . . .. ...... . . . . . ........ .. .... . . .. . . ............................. ..... . . . . .... . ....... . .. .. . . . . ........ ....... .. . . .... . .... . . . ..... .......... ...... . . . . . ... . ...... .. ... ..... ... . .. . . . ...................................... ... . . . . . . ..................... . .............. . . . .... .............................. .. .. .. . . ... .... . . .................... .... . . .. .. . . .. . . . ..........
lowQualScore : 0 0 444444 0 111 3 7 7 7 99 777777 7 7 7 7 7 33333333 22 4444 7 0 99 0 0 00000000000000000000000000000 33333 2 3 0 8 0000 0 0000000 2 44 00 8 2 0 2 11111111 2222222 44 5 4 1111 0 9999 0 0 0 55555 9999999999 444444 0 2 5 0 0 888 4 333333 77 777 77777 777 3 22 0 0 0 00000000000000000000000000000000000000 000 8 8 0 8 0 0 888888888888888888888 8 00000000000000 6 2 4 4444 666666666666666666666666666666 66 66 44 4 3 777 3333 7 0 22222222222222222222 2222 7 5 88 88 4 5 33 7 2 7 7777777777
consensus : ATGAGAAATAAATAAGGACAAGGTAAA-TAGTTC-CGA-TGTGT-TTATTCTGTTGATGGC-GT-TACTGGCCGCG--GTGAA---T--TTGAGGC-T-ACCG-TANC-A----AAT-AGGGCC---GCC-T--CACA-AAA-CAA---CAA--CAATNA---CAAGTCA-----CAAA-----TCACAAT-CATCA----ANTCA-------AATCGTANGTTCAAAT--CACAAATAGTTCGAACATATAAGCAAATTTCCAAGATATGAAAAGTCTGTNCAACGACA--------TAAACA-------TGTTCCATGGCCACATGGTGGCCATGCGCAAAGTGCATATCCATATGTACA-AT--AGAAGNCACAGACTCACGATATC-CAATGTGCC-A-T-ATCAACGATATAAG-----CA----A-----AATTCAC------AGCAAAATGGTTTGAAATTAGTAGCACTCTTCCATTGGAGTTGG-GGTG-CGACGAAAGCGCCA--TGCA-AGAG---G--GTTATCCN-GAG---TC-----ACC---GCGACGGTTG--GTANATGTANAGCTCGCACCAATG---GCGACAGATTNGGATTG-CA-TCGGTCTGA---AAAATAAACTACAGAG-AGCAGNATG----TGGGT-C--AA-AATTTGGGGAGGGAGGGAGGGGAATTT--G--TGGATATTTTTTGGGACGATAAA---TTTCCGTGTCT--CACCA-AAT----G-ATGA-----AAAGCA-TGAAANGGAAGTGCAGAGATTGT-AATTT-C-GGAGC--GGTTTCGCNAAACCGG--------------------GAAA----ATTCCG-TCATGGCAAA-ACCACTCGGAGTTGA--CCCTTGGATAAAA-TTCGCATATACTAG-ACAAGCTA-------AT-ATATGCACTAT
Reference ( family-5271 ) : ATGAGAAATAAATAAGGACAAGGTAAA-TAGTTC-CGA-TGTGT-TTATTCTGTTGATGGC-GT-TACTGGCCGCG--GTGAA---T--TTGAGGC-T-ACCG-TANC-A----AAT-AGGGCC---GCC-T--CACA-AAA-CAA---CAA--CAATNA---CAAGTCA-----CAAA-----TCACAAT-CATCA----ANTCA-------AATCGTANGTTCAAAT--CACAAATAGTTCGAACATATAAGCAAATTTCCAAGATATGAAAAGTCTGTNCAACGACA--------TAAACA-------TGTTCCATGGCCACATGGTGGCCATGCGCAAAGTGCATATCCATATGTACA-AT--AGAAGNCACAGACTCACGATATC-CAATGTGCC-A-T-ATCAACGATATAAG-----CA----A-----AATTCAC------AGCAAAATGGTTTGAAATTAGTAGCACTCTTCCATTGGAGTTGG-GGTG-CGACGAAAGCGCCA--TGCA-AGAG---G--GTTATCCN-GAG---TC-----ACC---GCGACGGTTG--GTANATGTANAGCTCGCACCAATG---GCGACAGATTNGGATTG-CA-TCGGTCTGA---AAAATAAACTACAGAG-AGCAGNATG----TGGGT-C--AA-AATTTGGGGAGGGAGGGAGGGGAATTT--G--TGGATATTTTTTGGGACGATAAA---TTTCCGTGTCT--CACCA-AAT----G-ATGA-----AAAGCA-TGAAANGGAAGTGCAGAGATTGT-AATTT-C-GGAGC--GGTTTCGCNAAACCGG--------------------GAAA----ATTCCG-TCATGGCAAA-ACCACTCGGAGTTGA--CCCTTGGATAAAA-TTCGCATATACTAG-ACAAGCTA-------AT-ATATGCACTAT
gi|1 : ATGAAAAATAAATAAAGACTAGGTAAA-TAA--C-TGA-TGTGT-TTATTCTGTTGAGGGC-GT-TACTGGCCGCG--GTGAA---T--TTGATAC-T-ACCG-TAGT-A----AA--AGGGCT---GCC-T--CACA-AAA-CAA---CAA--CAATAA---CAAGTCA-----CAAA-----TCA-AAT-CATCA----ATTCA-------AATC-----TTCAAAT--CACAAATAGTTCAAACA--------AATTTCCAAGATATGAAAAGT-TGTTCAAC-ACA--------TAAACA-------TGTTTCATGGCCACATGGTGGCCATGCGCAAAGTGCATATCCATATGTACA-AT--AGAAGTCACAGACTCATAATATC----TGTGCC-A-T-ATCAACGATATATG-----CA----A-----AATTCAC------AGCAAAATGGTTTAAAATTA----------TCCATTGGAGTTGG-GGTG-CGACGAAAGCGCCA--TACA-ACAG---G--GTTATCCA-GAG---TC-----ACC---GCGACGGATG--GTATATAGAGAGCTCACACC-ATGACTGCGACAGACAAGGACTG-CATTCGGTCTGA---AAAATAAACTACAGAG-AGCAGAATC----TGGGTCC--AA-AATTTGGGGAGGGAGGGAGGGAAATTT--GTTTGGATATTTTTGGGGATGATAAA---TTTCCGTGTCT--CACCA-AGT----G-ATGA-----AAAGCA-TGAAACGGAAGTATAGGAATTGTAAATTA-T-GGAGC--GGTTTCGCCAAACCGG--------------------GAAA----ATTCCG-TCAAGGCAAA-ACCACTCGGAGTTAACTCCCTTGGATAAAA-TTTGCATATACTAG-ACAAGCTA-------AT-ATATGCATTAT
gi|10 : AACAAATAAACACAGTTTATA-TA-----C-A-TGTAA-ATGTTTGGTTGATGAC-GT-TAATTGCCGATATGTGAAGGTT--CTCAGAC-T-A--A-TAAT-A----CAT-AGGGCC---GCC-T--CGCACAAA-CAAATTCAA--CAA--A---AAAGT-A-----CAA
gi|11 : tatccaagatatct-T--CACA-AAN-NNN---NNN--NNNNNN---NNNNNNN-----NNNN-----NNNNNNN-NNNNN----NNNNN-------NNNNNNNNNNNNNNNN--NNCAAATAGTTCGAACATATAAGCAAATTTCCAAGATATGAAAAGT-TGTTTAAC-ACA--------TTAGCA-------TTTTCCATGGCCACATGGTGGCCACGCgatgtgactgcatgtcaat
gi|12 : aagTAAGTAAGTACAAAGTAAA-TAGTTC-TGA-TGTTA-TCATTTTGTTGATGGT-GA-CACTGACCAGG--GC-AA---TTATTGAGGC-T-ACCT-TATT-AACTTAAT-GGG--------C-A--CATA-TAA-CAC---CAA--AAAATA---CA---TA-----CAAA-----Ta
gi|13 : tatcaaagatgcctgtCA-AT--ATATGATGCAGACTCTTGATAT----ATGTGCC-A-T-ATCAACGATATAAGGAGTTCA----A-----AATTCAC------AGCAAAATTGTTTGAAATTATTAGCATTCTTTCAAGAGATTTGG-GGTA-CGACGAAAGacgtatgt
gi|14 : AATATATAAGGACAAGGT--------TC-AGA-TGT---TTATTCTGTTGATGGC-GT-TACCGGCCGCG--GTGAAT--T--TTGAGGC-T-ACCG-TA
gi|15 : ccaagatgtctAA-TTGTTCACAA-GATGT-TTATTCTTCT-ATGGTTGT-TACTGGCCGCG--GTGAA---C--TT-AGGC-T-
gi|16 : aaactgcctcctgataaaaaccacTGCATATCCATATGTACA-AT--AGAAGTCAAAGACCCATGATATC----TGTGCC-A-T-ATCAACGAT
gi|17 : TGA--CCCTTGGATAAAA-TTTGCA-ATACTAA-ACAAACTA-------AT-ATATGCAC
gi|18 : gaaATAGATAAGGACAAGGT-AA-TAATTC-CGA-TG
gi|19 : ttatccaaaatgtctgCATTCTTCCATTGGACATAG-GGTC-TGACGAACACGCCACTTGCA-Ag
gi|2 : C---GCG-T--CACA-AAAACAT---CAAATCA-TAAGTTCAAGTCATAATTCAAG-----TCACAAT-TATCA----AATCA-------AATCGTATGTTCAAAT--CACAATTAGCTTCAATATATAAGCACATTTCTAAGATATGAAAAGT-TGTGCAAC-ACA--------TAAACA-------CATTCCATGGCCA-----------TGCGCAAAGTACATATCCATATGTACA-AT--AGAAGTCACAGACTCATGGTATT----TGTGCC-A-T-ATCAACGATATAAT-----CA----A-----AATCCAC------AGCAAAATGGTTTAAAATTATTAGCAATCTTCCATTGGAGTTGG-AGTG-CGACGAAAGCGCCA--TAAA-CCAG---G--GTTATCCC-GAG---TC-----ACC---ACGACGAATG--GTATATGTAGATCTCACACCA--G---GC------CT---AT------CCGGTCTGA---AAAATAAACTACAGAGCAGTAAAATG----AGGG-------------AGGGAGGGAGGGAGGTGAATTTGCG--TGGATATCTTTGGGGATGATAAT---TTTACGTGACT--CACCA-AAT----G-ATGA-----AAAGCATTGAAAT-GAAGTGTAGAAATTGTAAATTA-T-GGAGC--GGTTTCGCTAAACCGG--------------------GAAA----ATTCCG-TCAAGGCAAA-GCCACTCGGAGTTAACTCCCTTGGATAAAA-TTTACATATACTAG-ACAAGCTA-------AT-ATATGCATTAT
gi|3 : tgcaacaaaatatgcaacggccattcaataggcttattgtgcaatgagtaagtgcaaatgcacaAGATACGAAAAGTCTGTGCAATGACAATCTGACATAAACACATTATATGTTCAATTGCCACA--GTGGCCATGCATCAGATGCATGCGTAAACGTGCATATCAATAAGACACAGACTCACGATATCTCAATCTGTT-A-TTATCAACGATATAAG-----CA----G-------TTCAC------AG-------GTTTGAA-TTAGTAGCACTCTTCCATTGGAGTTAG-TGTG-CGACGAAAGCGCCA--GAAA-GGAA---G--ATTATCCC-GGG---TC-----ACC---GCGACGGTTG--GTAAATGTACAGCT---ATCAATA---G-GACAGATTCGGAT---CA---AATCTGA---AAAATAAACTAAAGAC-AGCAGTATA----T--------AATGGTTTGGGGAGGGAAGGAAGGGA------------ATATTTTTTAACAGGATTTT---TTTCCGC-TCT--TATCA-AATATCAA-AT-A-----AAAGCC-TGGAAAGGAAGTGCAGAGATTGT-AATTTCC-GAAGT--TGTTTTGCACAGCCGGAAAACATTTTGCAAAGCTGGGAAA----ATTCCA-TCATGGCAAA-ACCACTCGAA--TGA--CCCTTGGATAAAA-TTAACATATACTAG-ACAAACTAAT-----AT-ATATGCGCTATtattttcattataggga
gi|4 : gtctcaaagtgAAGACACAGATTTACGATATCGCAATTTGTT-AAT-ATCAGCGATATAAG-----CA----GTTCACAATTCAA------AGCCAAATGGTTTGAAATTAGTAGCACTCTTCCATTGGAGTTAG-GGTG-CGACGAAAGCTCCA---GAA-AGGGGAAG--ACTATTCC-CGGTTTTC-----ACC---GCG-CGGTTG--GTAAAGGTACAGCTtattacatatgtatatactgattacacacaaaatcaaagtaaataatgcaatgaaatatacaattaaaaaaa
gi|4 : atattaatTTGG-GGTGGCAACGAAAA-GCCG--CGCAGAAAG---GAAGACATCCGAGAG---TC-----ACCCCCGCGACGATTGCGATATAT-TACAGCTAGCA---ATA---GAG-CAGGTTCGGAT---CA---AATCTGA---AAA-TAAACTA-AG-G-ACTTGCACG----T--------AT-AATTTTGGGAGGGAGGG---------T--G--GGGATATTTTTTG--ACAGCAAACAGTTCTCGT-TCTAATACCACAAT----GTATAATCTTGAAAG-----AAAGGAAAGTGATGAGATTGT-AATTT-C-GGAGT----TTTTGCACAGCC-G--------------------GAAA----ATTCCGTTCATatgcagggtttggggtggcaacgaaaagccgcgcagaaaggaagacatccgagagtcacccccgcgacgattgcgatatattacagctagcaatagagcaggttcggatcaaatctgaaaataaactaaggacttgcacgtataattttgggagggagggtggggatattttttgacagcaaacagttctcgttctaataccacaatgtataatcttgaaagaaaggaaagtgatgagattgtaatttcggagtttttgcacagccggaaaattccgttcattaaatttcaggagtttgtttttgccaaactgggacattccattccatatggtaaaccactggaatgacccttggataaaaattcgcatatactagaacaagctaatatgcact
gi|4 : atattaataagacacagatttacgatatcgcaatttgttaatatcagcgatataagcagttcacaattcaaagccaaatggtttgaaattagtagcactcttccattggagttagggtgcgacgaaagctccagaaaggggaagactattcccggttttcaccgcgcggttggtaaaggtacagctatgcagggt-AATTT-CAGGAGTTTGTTTTTGCCAAACTGG--------------------GACATTCCATTCCA-T-ATGGTAAA--CCACT-GGAAT-GA--CCCTTGGATAAAAATTCGCATATACTAGAACAAGCTA----------ATATGCACTtaaatttcaggagtttgtttttgccaaactgggacattccattccatatggtaaaccactggaatgacccttggataaaaattcgcatatactagaacaagctaatatgcact
gi|5 : atattaataagacacagatttacgatatcgcaatttgttaatatcagcgatataagcagttcacaattcaaagccaaatggtttgaaattagtagcactcttccattggagttagggtgcgacgaaagctccagaaaggggaagactattcccggttttcaccgcgcggttggtaaaggtacagctatgcagggtttggggtggcaacgaaaagccgcgcagaaaggaagacatccgagagtcacccccgcgacgattgcgatatattacagctagcaatagagcaggttcggatcaaatctgaaaataaactaaggacttgcacgtataattttgggagggagggtggggatattttttgacagcaaacagttctcgttctaataccacaatgtataatcttgaaagaaaggaaagtgatgagattgtaatttcggagtttttgcacagccggaaaattccgttcattaATAAATA-GGACAAGGTAAA-TTGTTC-CGA-TGTTTATTATT-TGTTGATGCG-GT-TACTGGCCGCG--GTGAA---T--TTGAGGCTT-ACCG-TA-C-A----AAT-TGGGCT---GCC-TCGCACA-AAA-CAA---CGA--AAATCA---CAA---A-----CAAAATAGGTGACGGTCCATCAATAGACTCATTGTGTCAATGGTAGGCGCAAATGCCACAAA
gi|5 : atcaagatgtctgGAGATCAAAAGTCTGTGCAACGACA--------TAAACA-------TGTTCAATTGCCACATAGTGGCCATGCGCAAAGTGCAT-----TAT---TA-AT----AAGACACAGACTCACGATATCTCAATCTGTTAA-T-ATCAACGATATAAG-----CATTTCAC----AATTCAA------AGCCAAATGGTTTGAAATTAGTAGCACTCTTCCATT--AGTTGG-GGTG-CGACGAAAGCGCCACTTGCA-AGGG---cgccacaacacaacatcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatagtctcaaagtgagatcaaaagtctgtgcaacgacataaacatgttcaattgccacatagtggccatgcgcaaagtgcattattaataagacacagactcacgatatctcaatctgttaatatcaacgatataagcatttcacaattcaaagccaaatggtttgaaattagtagcactcttccattagttggggtgcgacgaaagcgccacttgcaagggcaat
gi|6 : atcaagatgtctgataaataggacaaggtaaattgttccgatgtttattatttgttgatgcggttactggccgcggtgaatttgaggcttaccgtacaaattgggctgcctcgcacaaaacaacgaaaatcacaaacaaaataggtgacggtccatcaatagactcattgtgtcaatggtaggcgcaaatgccacaaacgccacaacacaacatcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatagtctcaaagtATGAGAAATAAATAAAGGCTATGGAAACTAA----CGAGTGTGT-TTATTGT-TTGATGGC-ACGTACTG-CCGCG--GTGAA---T--TTGA-GC-TAACCGATAGCAA----AAA-AGGGCT---GCCTT--CACA-AAG-AGA---GAC--CACGCA---CAA---A-----CAAA-----CAACAAcaat
gi|6 : atccaagATC-A----AATCAAGGTCAAAG---T--CACA-AAT-CAAAT-CAGT-CAATT----CACGTCA-----CAAA-----TCAAAAT-CA--------ATCA-------AATCGTCAGTTCAAAT--CACAAATAGTTCGAACATATAAGCAAATTTCCAAGATAT--AAAGT-TGTTCAAC-ACA--------TAAACA-------TGTTCCATGGCCACATAGTGGCCATGCGCAAAGTGCATATCCATATGTACA-AT--AGGGGTCATAGACTCATGATATC----TGTGCC-A-T-ATCAACGAcaagcatgtgacgggccatcaataaagcattattgtgcaatgggtaagcgccaaatgcacaacgcggtcaccaaaacatcaaatcaaggtcaaagtcacaaatcaaatcagtcaattcacgtcacaaatcaaaatcaatcaaatcgtcagttcaaatcacaaatagttcgaacatataagcaaatttccaagatataaagttgttcaacacataaacatgttccatggccacatagtggccatgcgcaaagtgcatatccatatgtacaataggggtcatagactcatgatatctgtgccatatcaacga
gi|7 : atccaagatgagaaataaataaaggctatggaaactaacgagtgtgtttattgtttgatggcacgtactgccgcggtgaatttgagctaaccgatagcaaaaaagggctgccttcacaaagagagaccacgcacaaacaaacaacaacaagcatgtgacgggccatcaataaagcattattgtgcaatgggtaagcgccaaatgcacaacgcggtcaccaaaacTAGTTGTACTCTTCCACTAGAGTTTATGGTG-CGACGAAAGCGCC-----CA-CGAC---C--ATT-TCCA-GA----TCTGTAGACT---GCG-CCATCG--TTAAACGAGAAGCCCG-GTCAG-G---GC--CAGATTGGCGTTGACA-TCA--TTGAATGAAAGTA----ACAAAG-AGCAGTATGTATATGGTT-CATAA-AA---GGGGA-GGAAGGAG-----------------TATTTTTTTGGAAGACAAA---ATTCAGTA------------------G-AGG-------AAGCA-TGGA--GCATGTGC--------T-AATTT-C-AGAGT--GGGTTTGTTAGATCGA--------------------GAAA----ATTCCG-GAATAATAAACACAAC----AATAGG--CCCACAGAT-AAA-TGCACATATACCAA-ACAAGCTATGACTGTATCATATGCAGTA
gi|8 : aaAGATACGAAAAGTCTGTGCAACGACA--------TAAACA-------TGTTCAATTGCCACATAGTGGCCATGCGCAAAGTGCATAT---------TA-AT----AAGACACAGACTCACGATATCTCAATCTGTTAA-T-ATCAACGCTATAGG-----C-----------AGTTCACAATCAAAGCCAAATGGTTTGAAATTAGTAGCACTCTTCCATTGGAGTTGG-GGTC-CGACGAAAGCGCCAGTTGCA-AGgtatt
gi|9 : aaagtgAAATAGTTCGAACATATAAGCAAATTTCCAAGATATGAAAAGT-TGTTCAAC-ACA--------TAAACA-------TGTTCCTTGGCCACATGGTGGCCATGCGCAAAATGCATATCCATATGTACA-AT--AGAAGTCACAGACTCATGATATC----TGTGCC-A-T-ATCAACGATATAAG-----CA----A-----AATTCAC------AGGAAAATGGTTT-AAATTAg
blockSeqs : A C TGTTCA G TTA T T G AT GGTT T A A TTAACTT TC CAAA T CG C A CAAATCATAAGTTCAAGTCATAATT ATAGG N C N ATAG N TTGTGTC N NN GC C T G ATCTGACA CATTATA TG C T CAAT A TCAA A A T GAGTT GTTCAC AATCAA A T T G CTT G GAAG GA TTT TGTAG CCC A CG T G G CGGTCAGGGCCAGATTGGCGTTGACATCA ATG A C C A TATATGGTTCATAAAA GTGAATTTGCGT G T ACAG TCTAATACCACAATGTATAATCTTG AT AT TA A A CC TTTG T AAAACATTTTGCAAAGCTGG TTCC T C CA TC G T CT A T A TGACTGTATC
blockSeqs : A . AGTTC . AA T . . . TTA . . . GCAA T C . . . . ATCAGTCAATTCACGTCA . C . T . A . G AT . C G G . . TA C . AT T GCAA A . . . TTTCAC . A T . . CTT . GAA C . . . A . A G C ATCAATAGGACAGATTCGGATCAAA . A A . T TAATGGTTT GGGA A G T TCTTATCAAATATCAAATA C AA CA G . CA CG A . . . C G TC A T . . T . ATAT
blockSeqs : A . AATTC . TA C . . . TT . . . ATA T C . . . . ATTCAACAAAAAAGTA . C . T . C . G AG . C G G . . TA G . AG T TCAA . . . . A . C G . . GTT . G C . . . A . A G C AGCAATAGAGCAGGTTCGGATCAAA . G C . C TATAATTT TGG G C T GACTCACCAAATGATGA A AG AT G . T TT A . . . C A T A T . . A . AT
blockSeqs : A . TGTTC . GT C . . . C . . . TCA T T . . . . NNNNNNNNNNNNNNNN . C . . . A . G CA . . G . . . TA C . AG A TCAA . . . . A . C G . . T . G C . . . . . T G C CACACCAGGCCTATCCGG . . . . T AGGG . . A A AGAGG . . C . . C TG C . . . A . . . A . . C . AT
blockSeqs : . . TC . GT G . . . T . . . CA A T . . . . CAAAAAATACATA . A . T . . . TG C . AG A A . . . . G . C G . . G . C A . . . . . A . A . C T T . . . . . . . C . .
blockSeqs : . . AA . . . . . . T . . . . . . . CGAAAATCACAAA . . G . . . . . . AG A . . . . . A . A G . . C .
blockSeqs : . A . . . . . GACCACGCACAAA . T . . . . . . . T . . . . . . . . G . . . .
blockSeqs : . . A . . . . . . . .
blockSeqs : T . . . . . .
blockSeqCons : AGTTC* T* CAANAAACACGTA**************** AN CAA* T** NNCANCAGGCCAGATTCGGGTCGAA************* TAATGGTTC************ G************* CTCACCAAATGGATG*************** **
originalCons : ATGAGAAATAAATAAGGACAAGGTAAA-TAGTTC-CGA-TGTGT-TTATTCTGTTGATGGC-GT-TACTGGCCGCG--GTGAA---T--TTGAGGC-T-ACCG-TANC-A----AAT-AGGGCC---GCC-T--CACA-AAA-CAA---CAA--CAATNA---CAAGTCA-----CAAA-----TCACAAT-CATCA----ANTCA-------AATCGTANGTTCAAAT--CACAAATAGTTCGAACATATAAGCAAATTTCCAAGATATGAAAAGTCTGTNCAACGACA--------TAAACA-------TGTTCCATGGCCACATGGTGGCCATGCGCAAAGTGCATATCCATATGTACA-AT--AGAAGNCACAGACTCACGATATC-CAATGTGCC-A-T-ATCAACGATATAAG-----CA----A-----AATTCAC------AGCAAAATGGTTTGAAATTAGTAGCACTCTTCCATTGGAGTTGG-GGTG-CGACGAAAGCGCCA--TGCA-AGAG---G--GTTATCCN-GAG---TC-----ACC---GCGACGGTTG--GTANATGTANAGCTCGCACCAATG---GCGACAGATTNGGATTG-CA-TCGGTCTGA---AAAATAAACTACAGAG-AGCAGNATG----TGGGT-C--AA-AATTTGGGGAGGGAGGGAGGGGAATTT--G--TGGATATTTTTTGGGACGATAAA---TTTCCGTGTCT--CACCA-AAT----G-ATGA-----AAAGCA-TGAAANGGAAGTGCAGAGATTGT-AATTT-C-GGAGC--GGTTTCGCNAAACCGG--------------------GAAA----ATTCCG-TCATGGCAAA-ACCACTCGGAGTTGA--CCCTTGGATAAAA-TTCGCATATACTAG-ACAAGCTA-------AT-ATATGCACTAT
finalCons : ATGAGAAATAAATAAGGACAAGGTAAA-TAGTTC-CGA-TGTGT-TTATTCTGTTGATGGC-GT-TACTGGCCGCG--GTGAA---T--TTGAGGC-T-ACCG-TANC-A----AAT-AGGGCC---GCC-T--CACA-AAA-CAACAANAAACACGTA----------------CAAA-----TCACAAT-CATCA----ANTCA-------AATCGTANGTTCAAAT--CACAAATAGTTCGAACATATAAGCAAATTTCCAAGATATGAAAAGTCTGTNCAACGACA--------TAAACA-------TGTTCCATGGCCACATGGTGGCCATGCGCAAAGTGCATATCCATATGTACA-AT--AGAAGNCACAGACTCACGATATCCAA-TGTGCC-A-T-ATCAACGATATAAG-----CA----A-----AATTCAC------AGCAAAATGGTTTGAAATTAGTAGCACTCTTCCATTGGAGTTGG-GGTG-CGACGAAAGCGCCAT--GCA-AGAG---G--GTTATCCN-GAG---TC-----ACC---GCGACGGTTG--GTANATGTANAGCTNNCANCAGGCCAGATTCGGGTCGAA-------------TCTGA---AAAATAAACTACAGAG-AGCAGNATGTAATGGTTC------------GGGGAGGGAGGGAGG-------------GGATATTTTTTGGGACGATAAA---TTTCCGTCTCACCAAATGGATG---------------AAAGCA-TGAAANGGAAGTGCAGAGATTGT-AATTT-C-GGAGC--GGTTTCGCNAAACCGG--------------------GAAA----ATTCCG-TCATGGCAAA-ACCACTCGGAGTTGA--CCCTTGGATAAAA-TTCGCATATACTAG-ACAAGCTA-------AT-ATATGCACTAT
Alignments
lowQualScore : 111111 111 111111 11111111 11 1111 22222222222222222222222222222222 111111 1111 3333333 11 2 2 11111111 1111111 4444 11111 2222222222 111111 222 111111 111 11111 111 3333333 333333333333 111 3333333333333333333 77777777777 1111 44444444444444444444444444444444444 111 1111 55555555555555555555 1111 11 11 3333333333
lowQualScore : 5 5 666666 5 444 5 0 5 5 77 666666 0 0 5 5 6 77777777 00 0000 0 8888 5 5 66666666666666666666666666666666 888888 5 8 6 7777 1 2222222 2 77 33 0 1 1 1 88888888 6666666 22 2 4 9999 1 1111 8 4 4 22222 5555555555 444444 3 0 2 4 4 111 4 333333 77 111 66666 111 3 3 99 1 1 1 888 1 6 0000000 3 2 444444444444 99 111 3 0 5 0 8 1 5555555555555555555 8 66666666666 0 3 6 5555 88888888888888888888888888888888888 8 0 8 44 8 77 1 6 555 2222 0 1 44444444444444444444 4444 6 2 11 55 6 3 88 6 2 6 1111111111
lowQualScore : . . ...... . ... . . . . .. ...... . . . . . ........ .. .... . .... . . ................................ ...... . . . .... . ....... . .. .. . . . . ........ ....... .. . . .... . .... . . . ..... .......... ...... . . . . . ... . ...... .. ... ..... ... . . .. . . . ... . . ....... . . ............ .. ... . . . . . . ................... . ........... . . . .... ................................... . . . .. . .. . . ... .... . . .................... .... . . .. .. . . .. . . . ..........
lowQualScore : 0 0 444444 0 111 3 7 7 7 99 777777 7 7 7 7 7 33333333 22 4444 7 3333 7 7 11111111111111111111111111111111 333333 0 0 0 0000 0 5555555 5 55 88 8 2 0 2 11111111 2222222 44 5 4 1111 0 9999 0 0 0 55555 9999999999 444444 0 2 5 0 0 888 4 333333 77 777 77777 777 2 7 22 0 0 0 777 0 7 0000000 2 5 888888888888 22 777 8 8 0 8 0 0 6666666666666666666 0 00000000000 6 2 4 4444 44444444444444444444444444444444444 0 6 0 66 2 44 4 7 333 3333 7 0 22222222222222222222 2222 7 5 88 88 4 5 33 7 2 7 7777777777
consensus : ATGAGAAATAAATAAGGACAAGGTAAA-TAGTTC-CGA-TGTGT-TTATTCTGTTGATGGC-GT-TACTGGCCGCG--GTGAA---T--TTGAGGC-T-ACCG-TANC-A----AAT-AGGGCC---GCC-T--CACA-AAA-CAA---CAAA----AA--A--CA---CGT-A---CAAA-----TCACAAT-CATCA----ANTCA-------AATCGTANGTTCAAAT--CACAAATAGTTCGAACATATAAGCAAATTTCCAAGATATGAAAAGTCTGTNCAACGACA--------TAAACA-------TGTTCCATGGCCACATGGTGGCCATGCGCAAAGTGCATATCCATATGTACA-AT--AGAAGNCACAGACTCACGATATC-CAATGTGCC-A-T-ATCAACGATATAAG-----CA----A-----AATTCAC------AGCAAAATGGTTTGAAATTAGTAGCACTCTTCCATTGGAGTTGG-GGTG-CGACGAAAGCGCCA--TGCA-AGAG---G--GTTATCCN-GAG---TC-----ACC---GCGACGGTTG--GTANATGTANAGCTCGCANCA-GG-C-----CAGATTNGGA------TCGA-ATC--TGAA---AAATAAACTACAGAG-AGCAGNAT----GT--A-ATGGTTCG-GGGAGGG-AGGGAGG--AATTTG--TGGATATTTTTTGGGACGATAAA---TTTCC--G-T--CT--CACCA-AAT---GGAT------G-AAA-GCAT-GAAANGGAAGTGCAGAGATTGT-AATTT-C-GGAGC--GGTTTCGCNAAACCGG--------------------GAAA----ATTCCG-TCATGGCAAA-ACCACTCGGAGTTGA--CCCTTGGATAAAA-TTCGCATATACTAG-ACAAGCTA-------AT-ATATGCACTAT
Reference ( family-5271 ) : ATGAGAAATAAATAAGGACAAGGTAAA-TAGTTC-CGA-TGTGT-TTATTCTGTTGATGGC-GT-TACTGGCCGCG--GTGAA---T--TTGAGGC-T-ACCG-TANC-A----AAT-AGGGCC---GCC-T--CACA-AAA-CAA---CAAN----AA--A--CA---CGT-A---CAAA-----TCACAAT-CATCA----ANTCA-------AATCGTANGTTCAAAT--CACAAATAGTTCGAACATATAAGCAAATTTCCAAGATATGAAAAGTCTGTNCAACGACA--------TAAACA-------TGTTCCATGGCCACATGGTGGCCATGCGCAAAGTGCATATCCATATGTACA-AT--AGAAGNCACAGACTCACGATATC-CAATGTGCC-A-T-ATCAACGATATAAG-----CA----A-----AATTCAC------AGCAAAATGGTTTGAAATTAGTAGCACTCTTCCATTGGAGTTGG-GGTG-CGACGAAAGCGCCA--TGCA-AGAG---G--GTTATCCN-GAG---TC-----ACC---GCGACGGTTG--GTANATGTANAGCTNNCANCA-GG-C-----CAGATTCGGG------TCGA-ATC--TGAA---AAATAAACTACAGAG-AGCAGNAT----GT--A-ATGGTTCG-GGGAGGG-AGGGAGG-----------GGATATTTTTTGGGACGATAAA---TTTCC--G-T--CT--CACCA-AAT---GGAT------G-AAA-GCAT-GAAANGGAAGTGCAGAGATTGT-AATTT-C-GGAGC--GGTTTCGCNAAACCGG--------------------GAAA----ATTCCG-TCATGGCAAA-ACCACTCGGAGTTGA--CCCTTGGATAAAA-TTCGCATATACTAG-ACAAGCTA-------AT-ATATGCACTAT
gi|1 : ATGAAAAATAAATAAAGACTAGGTAAA-TAA--C-TGA-TGTGT-TTATTCTGTTGAGGGC-GT-TACTGGCCGCG--GTGAA---T--TTGATAC-T-ACCG-TAGT-A----AA--AGGGCT---GCC-T--CACA-AAA-CAA---CAAC----AATAA--CA---AGTCA---CAAA-----TCA-AAT-CATCA----ATTCA-------AATC-----TTCAAAT--CACAAATAGTTCAAACA--------AATTTCCAAGATATGAAAAGT-TGTTCAAC-ACA--------TAAACA-------TGTTTCATGGCCACATGGTGGCCATGCGCAAAGTGCATATCCATATGTACA-AT--AGAAGTCACAGACTCATAATATC----TGTGCC-A-T-ATCAACGATATATG-----CA----A-----AATTCAC------AGCAAAATGGTTTAAAATTA----------TCCATTGGAGTTGG-GGTG-CGACGAAAGCGCCA--TACA-ACAG---G--GTTATCCA-GAG---TC-----ACC---GCGACGGATG--GTATATAGAGAGCTCACACCATGA-CTGCGACAGACAAGGACTGCATTCG--GTC--TGAA---AAATAAACTACAGAG-AGCAGAATCTGGGTCCA-A-AATTTG-GGGAGGG-AGGGAGGGAAATTTGTTTGGATATTTTTGGGGATGATAAA---TTTCCGTG-T--CT--CACCA-AGT----GAT------GAAAA-GCAT-GAAACGGAAGTATAGGAATTGTAAATTA-T-GGAGC--GGTTTCGCCAAACCGG--------------------GAAA----ATTCCG-TCAAGGCAAA-ACCACTCGGAGTTAACTCCCTTGGATAAAA-TTTGCATATACTAG-ACAAGCTA-------AT-ATATGCATTAT
gi|10 : AACAAATAAACACAGTTTATA-TA-----C-A-TGTAA-ATGTTTGGTTGATGAC-GT-TAATTGCCGATATGTGAAGGTT--CTCAGAC-T-A--A-TAAT-A----CAT-AGGGCC---GCC-T--CGCACAAA-CAAATTCAAC----AA--A--AA---AGT-A---CAA
gi|11 : tatccaagatatctCAAATAGTTCGAACATATAAGCAAATTTCCAAGATATGAAAAGT-TGTTTAAC-ACA--------TTAGCA-------TTTTCCATGGCCACATGGTGGCCACGCgatgtgactgcatgtcaat
gi|12 : aagtcacaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAAGTAAGTACAAAGTAAA-TAGTTC-TGA-TGTTA-TCATTTTGTTGATGGT-GA-CACTGACCAGG--GC-AA---TTATTGAGGC-T-ACCT-TATT-AACTTAAT-GGG--------C-A--CATA-TAA-CAC---CAAA----AA--A--TA---CAT-A---CAAA-----Ta
gi|13 : tatcaaagatgcctgtCA-AT--ATATGATGCAGACTCTTGATAT----ATGTGCC-A-T-ATCAACGATATAAGGAGTTCA----A-----AATTCAC------AGCAAAATTGTTTGAAATTATTAGCATTCTTTCAAGAGATTTGG-GGTA-CGACGAAAGacgtatgt
gi|14 : AATATATAAGGACAAGGT--------TC-AGA-TGT---TTATTCTGTTGATGGC-GT-TACCGGCCGCG--GTGAAT--T--TTGAGGC-T-ACCG-TA
gi|15 : ccaagatgtctAA-TTGTTCACAA-GATGT-TTATTCTTCT-ATGGTTGT-TACTGGCCGCG--GTGAA---C--TT-AGGC-T-
gi|16 : aaactgcctcctgataaaaaccacTGCATATCCATATGTACA-AT--AGAAGTCAAAGACCCATGATATC----TGTGCC-A-T-ATCAACGAT
gi|17 : TGA--CCCTTGGATAAAA-TTTGCA-ATACTAA-ACAAACTA-------AT-ATATGCAC
gi|18 : gaaATAGATAAGGACAAGGT-AA-TAATTC-CGA-TG
gi|19 : ttatccaaaatgtctgCATTCTTCCATTGGACATAG-GGTC-TGACGAACACGCCACTTGCA-Ag
gi|2 : C---GCG-T--CACA-AAAACAT---CAAATCATAA--GTTCAAGTCAT-AATTCAAG-----TCACAAT-TATCA----AATCA-------AATCGTATGTTCAAAT--CACAATTAGCTTCAATATATAAGCACATTTCTAAGATATGAAAAGT-TGTGCAAC-ACA--------TAAACA-------CATTCCATGGCCA-----------TGCGCAAAGTACATATCCATATGTACA-AT--AGAAGTCACAGACTCATGGTATT----TGTGCC-A-T-ATCAACGATATAAT-----CA----A-----AATCCAC------AGCAAAATGGTTTAAAATTATTAGCAATCTTCCATTGGAGTTGG-AGTG-CGACGAAAGCGCCA--TAAA-CCAG---G--GTTATCCC-GAG---TC-----ACC---ACGACGAATG--GTATATGTAGATCTCACACCA-GG-C-----C-TATCCGG-------------TC--TGAA---AAATAAACTACAGAGCAGTAAAAT----G-----AGGG---A-GGGAGGG-AGGGAGGTGAATTTGCGTGGATATCTTTGGGGATGATAAT---TTTAC--G-TGACT--CACCA-AAT---G-AT------G-AAAAGCATTGAAATG-AAGTGTAGAAATTGT-AAATTAT-GGAGC--GGTTTCGCTAAACCGG--------------------GAAA----ATTCCG-TCAAGGCAAA-GCCACTCGGAGTTAACTCCCTTGGATAAAA-TTTACATATACTAG-ACAAGCTA-------AT-ATATGCATTAT
gi|3 : tgcaacaaaatatgcaacggccattcaataggcttattgtgcaatgagtaagtgcaaatgcacaAGATACGAAAAGTCTGTGCAATGACAATCTGACATAAACACATTATATGTTCAATTGCCACA--GTGGCCATGCATCAGATGCATGCGTAAACGTGCATATCAATAAGACACAGACTCACGATATCTCAATCTGTT-A-TTATCAACGATATAAG-----CA----G-------TTCAC------AG-------GTTTGAA-TTAGTAGCACTCTTCCATTGGAGTTAG-TGTG-CGACGAAAGCGCCA--GAAA-GGAA---G--ATTATCCC-GGG---TC-----ACC---GCGACGGTTG--GTAAATGTACAGCTATCAATA-GG-A-----CAGATTCGGA------TCAA-ATC--TGAA---AAATAAACTAAAGAC-AGCAGTAT----AT--A-ATGGTTTG-GGGAGGGAAGGAAGG-----------GAATATTTTTTAACAGGATTTT---TTTCC--GCT--CT--TATCA-AATATCAAAT------A-AAA-GCCT-GGAAAGGAAGTGCAGAGATTGT-AATTTCC-GAAGT--TGTTTTGCACAGCCGGAAAACATTTTGCAAAGCTGGGAAA----ATTCCA-TCATGGCAAA-ACCACTCGAA--TGA--CCCTTGGATAAAA-TTAACATATACTAG-ACAAACTAAT-----AT-ATATGCGCTATtattttcattataggga
gi|4 : gtctcaaagtgAAGACACAGATTTACGATATCGCAATTTGTT-AAT-ATCAGCGATATAAG-----CA----GTTCACAATTCAA------AGCCAAATGGTTTGAAATTAGTAGCACTCTTCCATTGGAGTTAG-GGTG-CGACGAAAGCTCCA---GAA-AGGGGAAG--ACTATTCC-CGGTTTTC-----ACC---GCG-CGGTTG--GTAAAGGTACAGCTAT--GCA-GG---------GTTTGGGG------TGGC-AAC---GAA---AAtattacatatgtatatactgattacacacaaaatcaaagtaaataatgcaatgaaatatacaattaaaaaaa
gi|4 : atattaatTTGG-GGTGGCAACGAAAA-GCCG--CGCAGAAAG---GAAGACATCCGAGAG---TC-----ACCCCCGCGACGATTGCGATATAT-TACAGCTAGCAATA-GA-G-----CAGGTTCGGA------TCAA-ATC--TGAA---AA-TAAACTA-AG-G-ACTTGCAC----GT--A--TAATTTT-GGGAGGG-AGGGTGG-----------GGATATTTTTTG--ACAGCAAACAGTTCTC--G-TT-CTAATACCACAAT---GTATAATCTTG-AAA-G-----AAAGGAAAGTGATGAGATTGT-AATTT-C-GGAGT----TTTTGCACAGCC-G--------------------GAAA----ATTCCGTTCATgccgcgcagaaaggaagacatccgagagtcacccccgcgacgattgcgatatattacagctagcaatagagcaggttcggatcaaatctgaaaataaactaaggacttgcacgtataattttgggagggagggtggggatattttttgacagcaaacagttctcgttctaataccacaatgtataatcttgaaagaaaggaaagtgatgagattgtaatttcggagtttttgcacagccggaaaattccgttcattaaatttcaggagtttgtttttgccaaactgggacattccattccatatggtaaaccactggaatgacccttggataaaaattcgcatatactagaacaagctaatatgcact
gi|4 : atattaataagacacagatttacgatatcgcaatttgttaatatcagcgatataagcagttcacaattcaaagccaaatggtttgaaattagtagcactcttccattggagttagggtgcgacgaaagctccagaaaggggaagactattcccggttttcaccgcgcggttggtaaaggtacagctatgcagggt-AATTT-CAGGAGTTTGTTTTTGCCAAACTGG--------------------GACATTCCATTCCA-T-ATGGTAAA--CCACT-GGAAT-GA--CCCTTGGATAAAAATTCGCATATACTAGAACAAGCTA----------ATATGCACTtaaatttcaggagtttgtttttgccaaactgggacattccattccatatggtaaaccactggaatgacccttggataaaaattcgcatatactagaacaagctaatatgcact
gi|5 : atattaataagacacagatttacgatatcgcaatttgttaatatcagcgatataagcagttcacaattcaaagccaaatggtttgaaattagtagcactcttccattggagttagggtgcgacgaaagctccagaaaggggaagactattcccggttttcaccgcgcggttggtaaaggtacagctatgcagggtttggggtggcaacgaaaagccgcgcagaaaggaagacatccgagagtcacccccgcgacgattgcgatatattacagctagcaatagagcaggttcggatcaaatctgaaaataaactaaggacttgcacgtataattttgggagggagggtggggatattttttgacagcaaacagttctcgttctaataccacaatgtataatcttgaaagaaaggaaagtgatgagattgtaatttcggagtttttgcacagccggaaaattccgttcattaATAAATA-GGACAAGGTAAA-TTGTTC-CGA-TGTTTATTATT-TGTTGATGCG-GT-TACTGGCCGCG--GTGAA---T--TTGAGGCTT-ACCG-TA-C-A----AAT-TGGGCT---GCC-TCGCACA-AAA-CAA---CGAA----AA--T--CA---CAA-A---CAAAATAGGTGACGGTCCATCAATAGACTCATTGTGTCAATGGTAGGCGCAAATGCCACAAA
gi|5 : atcaagatgtctgGAGATCAAAAGTCTGTGCAACGACA--------TAAACA-------TGTTCAATTGCCACATAGTGGCCATGCGCAAAGTGCAT-----TAT---TA-AT----AAGACACAGACTCACGATATCTCAATCTGTTAA-T-ATCAACGATATAAG-----CATTTCAC----AATTCAA------AGCCAAATGGTTTGAAATTAGTAGCACTCTTCCATT--AGTTGG-GGTG-CGACGAAAGCGCCACTTGCA-AGGG---cgccacaacacaacatcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatagtctcaaagtgagatcaaaagtctgtgcaacgacataaacatgttcaattgccacatagtggccatgcgcaaagtgcattattaataagacacagactcacgatatctcaatctgttaatatcaacgatataagcatttcacaattcaaagccaaatggtttgaaattagtagcactcttccattagttggggtgcgacgaaagcgccacttgcaagggcaat
gi|6 : atcaagatgtctgataaataggacaaggtaaattgttccgatgtttattatttgttgatgcggttactggccgcggtgaatttgaggcttaccgtacaaattgggctgcctcgcacaaaacaacgaaaatcacaaacaaaataggtgacggtccatcaatagactcattgtgtcaatggtaggcgcaaatgccacaaacgccacaacacaacatcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatagtctcaaagtATGAGAAATAAATAAAGGCTATGGAAACTAA----CGAGTGTGT-TTATTGT-TTGATGGC-ACGTACTG-CCGCG--GTGAA---T--TTGA-GC-TAACCGATAGCAA----AAA-AGGGCT---GCCTT--CACA-AAG--------AGA----GA--C--CA---CGC-A---CAA--------ACAAA-CAACA----Acaat
gi|6 : atccaagATC-A----AATCAAGGTCAAAG---T--CACA-AAT-CAAAT-CAGT----CA--ATTCA---CGTCA---CAAA-----TCAAAAT-CA--------ATCA-------AATCGTCAGTTCAAAT--CACAAATAGTTCGAACATATAAGCAAATTTCCAAGATAT--AAAGT-TGTTCAAC-ACA--------TAAACA-------TGTTCCATGGCCACATAGTGGCCATGCGCAAAGTGCATATCCATATGTACA-AT--AGGGGTCATAGACTCATGATATC----TGTGCC-A-T-ATCAACGAcaagcatgtgacgggccatcaataaagcattattgtgcaatgggtaagcgccaaatgcacaacgcggtcaccaaaacatcaaatcaaggtcaaagtcacaaatcaaatcagtcaattcacgtcacaaatcaaaatcaatcaaatcgtcagttcaaatcacaaatagttcgaacatataagcaaatttccaagatataaagttgttcaacacataaacatgttccatggccacatagtggccatgcgcaaagtgcatatccatatgtacaataggggtcatagactcatgatatctgtgccatatcaacga
gi|7 : atccaagatgagaaataaataaaggctatggaaactaacgagtgtgtttattgtttgatggcacgtactgccgcggtgaatttgagctaaccgatagcaaaaaagggctgccttcacaaagagagaccacgcacaaacaaacaacaacaagcatgtgacgggccatcaataaagcattattgtgcaatgggtaagcgccaaatgcacaacgcggtcaccaaaacTAGTTGTACTCTTCCACTAGAGTTTATGGTG-CGACGAAAGCGCC-----CA-CGAC---C--ATT-TCCA-GA----TCTGTAGACT---GCGCCA-TCG--TTAAACGAGAAGCCCG-GTCA-GGGC-----CAGATTGGCG------TTGACATCATTGAATGAAAGTAA----CAAAG-AGCAGTAT----GT--ATATGGTTCATAAAAGGG-GAGGAAG-----------GAGTATTTTTTTGGAAGACAAA---ATTC------------------AGT---AGA-------G-GAA-GCAT-GGA--GCATGTGC--------T-AATTT-C-AGAGT--GGGTTTGTTAGATCGA--------------------GAAA----ATTCCG-GAATAATAAACACAAC----AATAGG--CCCACAGAT-AAA-TGCACATATACCAA-ACAAGCTATGACTGTATCATATGCAGTA
gi|8 : aaAGATACGAAAAGTCTGTGCAACGACA--------TAAACA-------TGTTCAATTGCCACATAGTGGCCATGCGCAAAGTGCATAT---------TA-AT----AAGACACAGACTCACGATATCTCAATCTGTTAA-T-ATCAACGCTATAGG-----C-----------AGTTCACAATCAAAGCCAAATGGTTTGAAATTAGTAGCACTCTTCCATTGGAGTTGG-GGTC-CGACGAAAGCGCCAGTTGCA-AGgtatt
gi|9 : aaagtgAAATAGTTCGAACATATAAGCAAATTTCCAAGATATGAAAAGT-TGTTCAAC-ACA--------TAAACA-------TGTTCCTTGGCCACATGGTGGCCATGCGCAAAATGCATATCCATATGTACA-AT--AGAAGTCACAGACTCATGATATC----TGTGCC-A-T-ATCAACGATATAAG-----CA----A-----AATTCAC------AGGAAAATGGTTT-AAATTAg