lowQualScore : 222 111 1111111 1111 2 222222222222222 333333333333333333333333333 111 11 222 88888888888888888888888888888888888888888888888888888888888888888888888888888 111111 11111 22222 5555555555555555 3333 111 2222222 111 33333333333 77777777777777777 2222 333333 1 1 111 99999999999999999999999999999999 2222 11 555555555555555555 11111 22222222 3333333333333333 2222 111 11 6666666666666666666666666666666666666 333333333 111111 2222 222 66666666666666666666666666 1111 111 1 22222 3333333333333 1111 2 22
lowQualScore : 4 222 8 6 111 6 6 8888888 6 6 0000 8 6 6 5 5 888888888888888 5 555555555555555555555555555 555 5 5 5 33 555 55555555555555555555555555555555555555555555555555555555555555555555555555555 6 111111 88888 6 6 00000 0000000000000000 8 1111 8 222 8 8 6666666 8 444 8 8 88888888888 8 3 44444444444444444 8888 888888 0 3 3 2 6 444 2 1 11111111111111111111111111111111 6 3333 55 666 888 6 444444444444444444 2 99 6 3 22222 6 6 00000000 6 7777777777777777 0 0000 5 444 11 1 6666666666666666666666666666666666666 55 888 999999999 3 3 222222 0000 0 2 5 777 6 55555555555555555555555555 2222 444 0 77777 8 5555555555555 3333 3 7 44
lowQualScore : . ... . . ... . . ....... . . .... . . . . . ............... . ........................... ... . . . .. ... ............................................................................. . ...... ..... . . ..... ................ . .... . ... . . ....... . ... . . ........... . . ................. .... ...... . . . . . ... . . ................................ . .... .. ... ... . .................. . .. . . ..... . . ........ . ................ . .... . ... .. . ..................................... .. ... ......... . . ...... .... . . . ... . .......................... .... ... . ..... . ............. .... . . ..
lowQualScore : 0 000 0 7 777 7 7 5555555 7 7 8888 7 7 7 7 7 333333333333333 7 777777777777777777777777777 777 7 7 7 66 000 88888888888888888888888888888888888888888888888888888888888888888888888888888 7 888888 00000 7 7 00000 4444444444444444 0 2222 0 222 0 0 0000000 0 000 0 0 00000000000 0 8 22222222222222222 3333 333333 7 3 7 3 7 222 5 0 44444444444444444444444444444444 7 5555 88 888 777 7 333333333333333333 5 22 7 5 88888 7 7 77777777 7 7777777777777777 3 8888 4 000 00 0 8888888888888888888888888888888888888 00 666 666666666 5 3 888888 5555 7 3 7 555 7 55555555555555555555555555 6666 000 0 00000 0 5555555555555 3333 2 8 00
consensus : AGCTNAAAA--TCAT-TTT-C---CGTTT-CG-TTC-C-G--CA-TTTA-GC--A-ATA-CCC-TCTTAT-G-ACG--TCA----C-C-T-G-AGACAC-T--TG---CAT--T---TA-G---C-CACT---AT-A-TT-AA--TTT---ATGTG----ACAAATGAC-CAGA---T-TTAT-AT---TGACTCCGTGCATG--GACT-G-G------TG-A--T-G-C---CAG-AC--T---TTC-AA--GAG-TG-AAAG-----GACTTTA------AC-TT-AATAT-ATAC--GA-GGGAC-T-GGAC-C-A-------GTTTT-TT---AG-TC-ACA-----------TGGAA-CTAGGAGCG---------GGGGGGGGGGGGGGGG----GGG------GAGAG-GGNGGGCGGGGGGGGGGGGG--GGGGGGGGGGGGGTATGTAC----------ATTTA-GTACC--ATTG-GAC-TAAA-AC--CTCGGCTT--GAC-ATT-A-TTC-ACTGCC--ACT-----------GGCCAG--CCCACAG-AGAATT-TGTAATA-TTC-TATCAATA--------GATA-ATC--T--------GTG-GTTTTAAAGG----AATTATATCNAACT---AACTT--ACTGTAAACATAA--------G----GT--T-GA---GCG-TAC------CTAAGCGCT-GTTTTT-G------ATAAACGATG-T-C-GT--ATCCGGACC-TAATA--TTG-ACATAA-A----ATT--G-TG-TTT-----G-CAGTT--TTACC--TCC-GC----CTC-TTCCAAGTANCCTATATTTT--TAATT--TTGNAATG-ACAATAGACGNTCGTGA
Reference ( gi|1 ) : AGCTTAAA---TCAT-TTT-C---CGTTT-CG-TTC-C-G--CA-TTTA-GC--A-ATATCCC-TCTTAT-G-ACG--TAA----C-C-T-G-AGACAC-T--TG---CAT--T---TA-G---C-CACT---AT-A-TT-AA--TTT---ATGTG----AC-AATCAC-CAAAATGT-TTAT-AT---TGACTCCATGCATG--GACT-G-G------TG-A--T-G-C---CAG-AC--T---TTC-AA--GAG-TG-AAAG-----GACTTTA------AC-TA-AATAT-ATAC--AA-GGGAC-T-GGAC-C-A-------GTTTT-TT---AG-TC-ACA-----------TGGAA-CTAGGTACG---------GGGGGGGGGGGGGGGG----GGG------GAGGG-GGGGGGTGGGGGGGGGGGGG--GGGGGGGGGGGGGTATGTAC----------ATTTG-GTACC--ATTGGGAC-TAAA-AC--CTCGGCTT--GGC-ATT-A-TTC-ACTGCC--ACT-----------GGCCAG--CCCACAG-AGAATT-TGTAATA-TTC-TATCAATA--------GATA-ATC--T--------GTG-GTTTTAAAGG----AATTATATCTAACT---AACTT--ACTGTAAACATAA--------G----GT--T-G----GCG-TGC------CTAAGTGCT-GTTTTTGG------ATAAACGGTG-T-C-GT--ACCCGGACC-TAATA--CTG-ACATAA-A----ATT--G-TG-TTT-----G-CAGTT--TTACC--TCC-GC----GTC-TTCCAAGTAACCTATATTTT--TAATT--TTGCAATGAACAATAGACGA-CGTGATT
gi|2 : AGCTTAAAA--TCAT-TTTTC---CGTTT-CG-TTC-C-G--CA-TTTAGGC--A-ATA-CCC-TCTTAT-G-ACGTTTCA----C-C-T-G-AGACACTT--TGC--CATAAT---TA-G-----CACT---AT-ACTT-AA--TTT---ATGTG----ACAAATGAC-CAA----T-TT-T-AT---TGACTC----CATG--GACT-G-G------TG-AT-T-GTC---CAG-AC--T---TTT-CA--GAG-TG-AAAG-----GACTTTA------AC-T----TAT-ATAT--AAGGGGAC-TGGGAC-C-A-------GTTTTGTT---AG-TC-ACA-----------TGGAA-CTGGGGGTG---------GGGGGTGGGCGG
gi|8 : aAGCTAAAA---TCAT-TTT-C---CGTTT-CG-TTC-C-G---A-TTTA-GC--A-ATA-CCC-T-TAAT-G-ACG--TCA----C-CTT-G-AGA--------A---CA----------------CACTG--AT-A-TT--A--TTTCA-ATGTGTAAAACAAATGAC-CAGA---T-TTGCGAT---TGACTCCAT---TG--G-CT-G-G------TG-A--TGG-T---CAG-A---T---TTC-AA--GAG-TG-AAA------GACTTAA------AC-TT-TATAT-ATAA--TA-GAGACTT-GGACGCAA-------GTTTT-TTTAAAG-TC-ACA-----------TGGAA-C---GT-----------------GGGGGGGGGGG----GGG------GAGAACGGAAGGTGGGGGGGGGGGGttatgtaccatatagcacatttgtaccattgactaaaactcgttgacatttattccactgccactggccagcccacagagaattttaatattctatcaatagataaatagataatctgtgtttcaaaggaaattatatctaactaactttctgtaaacataaggttggcgttacctaagtgctcggttttcgataacgatgtccgtaccggacctaatatttgcacataaaattgattttgcagtttacctccggcctcttccaagtaaacaattgcaatgatcaatagacgtttcgtaat
gi|7 : taGCTAAAA---TCATATTT-C---CGTTT-CG-TTC-CGG--CA-TTTA-GCCAA-ATACCTC-T-TTAT-GAACG--TCA----C-C-T-GAAGACAC-G--TG---CAT--TGTATG-T---C-CACTATAAT-A-TT-AAT-TTT---ATGTG----GCAAATGAC-CAA------TTCT-AT---TG-CTC----CATG--GACTGG-G------TGTAGTT-G-TCCGCAG-ACAAT---TTC-AAGTGAG-TG-CGAGATAGTGACTGT-------AC-T----TATAATACCTAA-GGGAC-T-GGAC-C-AACTCTCGGTTTT-TA---AGCTC-ACAATGGCAGCGGGCGGAT-CCAGGAATGTCTAGTTTAGGGGGGGGGGGGGc
gi|13 : TTAAAACTTCAT-GTT-CGTATATTT-TGATTCAC-GACTA-TTTA-GC--A-ATA-ACC-TC-TAT-G-ACG--TCA----CACAT-G-AGACAC-T--TG---CTT--T---TA-GCGCC-CACT---ATAA-TT-AA--TTcgttggatttttttttc
gi|15 : AAA---TCAT-TT--C---CGTTT-CG-TTC-C-GG-CAGTTTA-GC--C-ATA--CC-TCTTATCG-ACG--TCA----C-----G-AGACAC-T--TG---CAT--T---TAGG---C-CACT---AT-A-TT-AA--T
gi|5 : cttacTT-C---CGTGTGCG-TTC---G--CA-TTTA-GC--ATGTACCCCCTCTTAC-G-TCG--CTGTCCCC-C-TCA-AGACAA-TGTTGAGCCTT--T---TA-G---CGCACT---AT-A-TTTAA--TTT---ATGTG----AC-GATGACTC--AATGTATGAC-GTGCCTACCTCCACGTTCG--CACT-G-T------CG------------CAG-CC--TCTGTTC--A--GAGTTGTAAAG-----GATCTTATTAAAGACTTT-AATAT-ATACG-GA-GGGAA-A-GGAC-C-A-------GTTTT-TT---AG-TC-ACA-----------TGGAATCTATGAGCG---------AGGCGGGGGGGTGGCGCGCCGGGCGTGCAGAGAG-CGCGGGCAGCGGGGGCGCGGCCCGGGGGGGTGGGTTATGTAC----------Ag
gi|12 : AT-G-ACG--TCA----T-C-T-G-AGACAC----TG---TAT--T---TA-T---C-CACT---AT-A-TC-AACGTTTTTAAAGAA----ACTATTTGC-TAG------TTAT-AT---TGACTCCGTGGATAATGACT-GTGAAATACTG-G--T-G-A---CAG-AC--T---T-------GAG-TG-AAc
gi|3 : CATG--GACT-G-G------TG-A--T-GTC---CAGCAC--T---TTCCAA--GAG-TG-AAAG------ACTT-A------AC-TTTAATAT-ATA----A-GGGAC-T-GGAC-C-A-------GTTTT-TT---AG-TCCACA-----------TGGAA-CTAGG---------------------GGGGGGGG----GGG------GGGGG-GGGGGG-GGG-----------------------GGTATGTAC----------ATTTT-GTACC--ATTG-----CAAA-AG--CTCGGCTT--GACAATT-AGTTC--CTGCC--ACT-----------GG-CAG--CCCACAGAAGAATTGTGT-ATACTTCTTAACAATA--------GATAGATC--T--------GT--GTTTTAAGGA----AATTATATCTAACT---AACTT--ACTGTCAACACAA--------G----GT--TGG----GCGCTAC------CTAAGTGCT-GTTTT--G------ATAAACGGTC-T-C-GT--A-CCGGA-C-TAATA---TG-ACATAA-A------T--G-TG-TT---------ATTT--TTA
gi|2 : GGGGGTG--GGGGGTGGGCGGTTATGTACCATATAGCACATTTG--TACC--ATTG--AC-TAAA-AC---TCG--TT--GAC-ATTTA-TTCCACTGCC--ACT-----------GGCCAG--CCCACAG-AGAATT-T-TAATA-TTC-TATCAATAGATAAATAGATA-ATC--T--------GT--GTTTCAAAGGA---AATTATATCTAACT---AACTT--TCTGTAAACATAA--------G----GT--T-G----GCGTTAC------CTAAGTGCTCGGTTTTCG------AT-AACGATG-TCC-GT--A-CCGGACC-TAATAT-TTGCACATAA-A----ATT--G-AT-TTT-----G-CAG-T--TTACC--TCCGGC----CTC-TTCCAAGTAAAC-----------AA----TTGCAATGATCAATAGACGattcgttgcaatgacaatagacaatcgtga
gi|6 : aagcttaaaatcatttttccgtttcgttccgcatttaggcaataccctcttatgacgtttcacctgagacactttgccataattagcactatacttaatttatgtgacaaatgaccaattttattgactccatggactggtgattgtccagacttttcagagtgaaaggactttaacttatatataaggggactgggaccagttttgttagtcacatggaactGGGGG--AAAAGGGAGGGGATACCAAC----------GCCTA-GAG----ATAAAGACATAGA-AGA-CTCGGCTA--GAC-ATT-A-TTC-ACT-------------------GGCCAG--CCCTCAG-AGAATT-TGTAATA-TTA-TATCAATA--------GATT-GTG--T--------TTGTGTTTTAAAAG----ATTTATATCGAAAT---AATTT--ACTGTTATCATAA--------AATCCGT--T-GATGAGCG-TAT------CTAAGGACT-GTTTT--G------AAAAACGAT--T-CAGT--ATCAGG-CC-TAATA--TTG-ACCTAG-A----AATAAG-TGATTTTTTCCC-CAATTTCTTATT--TCC-ACTATTTTC-TTCCCAATA---TATAATGG--TAATC--TTtttcgtaat
gi|11 : gttacaaggaacaGGGGG--GGGGGGGGCGGGG-----AA----------A-------AC---------AC-TAAGGAC--TCCGGCTTT-GAC-ATG-A-TTA-ACTG------------------GGCCAG--CCCACAG-AG-AT----------TTC-TATCCATA--------GATA-ATCTTT--------GTG-TTTTCAAAGA----AATT
gi|4 : gtcacatggaatGGGGGGAGGTATGTAC----------AATTATGTACTAAATT--GACATAAA-A---CTCGGCTTGAGAC-ATA-T-TTC-ACTGCCCAACTAATAGATCGAGGACCAGTCCCTACAA-AGAATT-GGTATTA------ATGAATT--------GATA-CTC--T--------G------TTAAAGGAGGAAATTGTAC---ACTTCAGACTTTCACTTTAAAAAACA--------G----ATACC-GA---GGA-TAC------TTAGGCTCT--TTTTTGGAATTGAATTAACGATGTT-C-GTTAATCCAGATCGTAATATTTTG-ACAACA-ACCATATT--GTTGTTTT-----GTCAG-T--TTACCCTTCC-GC----TTCTTTCCAAGTATTCC---TTTTAATAATC--TTATAAT
gi|19 : AC-AAGA-ACGTCTCAGCTA--GAA-ATT-A-TTC-ACTGCC--------------------------CACAG-AGTATT-GGCAATG-TTC-TATCAAAA--------GA
gi|9 : agaggaaaA--------GATA-ATC--TTTTAAGTTGTG-TTTTAAAAGA----AATAATATCGAACT---CATTA--ACTGTATACATAAAATCAGTAG----GT--G-G----GTG-TACACGTATCTAAGGACA-GGTTT--G------AAAAACGATA-C-A-GT--ACC-GGGCC-TAATA--TTG-ACCTAACA----AT
gi|18 : G------ATAAACGATG-T-C-GT--A-CCGGACG-TAATaagttttataaaaatggatttcttcaaattcactattttcaaaa
gi|17 : CGGGCC-TAACA--TTG-ATATTA-T----ATT--A-AG-----------CAGTT--TCTCA--TCC-GC----CTC-TTCCAAGTTTCCTGAAATTT--AAGCT--TTGGAATG-ACAGTAgttttacaagtagcctatatttctaactttaaaatgacaatagacgtcgtgtt
gi|18 : ----GTT-TTACAAGTAGCCTATATTTC--TAACT--TTAAAATG-ACAATAGACGT-CGTG
gi|3 : gataaacgatgtcgtaccggacgtaatTATTTT--TAATTCGTTGCAATG-ACAATAGACAATCGTGAtt
10 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): GGGGGGGGGGGGGGGGTGGGGGGGGGGGCTACTATTTACATGGATATTGAAATAAGTAGGGCCCCTTAGTTTCATTTCTACAGTACACATCTTTATCTTTCTTTACAGTACATTTAATGGTTGAAATCTTTTGTGTTTTAGAAATTGTGCCT
Unaligned ( gi|14 ): GCAGGGGCGGATCCAGGAATTCTGGTTAGGGGGGGCGTGGATTTTTTTTTTTCAGAGGCAGGGGGTCTGGGGGCCGCCTTAAGGCCCCTAGT
Unaligned ( gi|16 ): AGGGGCGGATCCAGGAATTCTGGTTAGGTGGGGGGGGGGCATTGATAATTTTTTGTTTCACTGAGGCAGTGGGTCCATGGGCAAGGC
Unaligned ( gi|20 ): CAGGGGCGGATCCAGGAATTCTTGGTAGGGGGGGCGGGATTTTTTTTTCAGAGGCAGGG
Unaligned ( gi|21 ): GGGGCGGAATCCAGAATTCTGGTTGGGGGGGGGGGGGGCGTGGATTTTTTTCAGA
Unaligned ( gi|22 ): AGGGGCGGATCCAGGAATCCTGGTTAGGGAGGGCGTGGATTTTTTTTCAGAGGCA
Unaligned ( gi|23 ): CAGGGCGGATCCAGGAATTCTGGTTAGAGGGGCATGGATTTTTTTCAGAGGCAG
Unaligned ( gi|24 ): TGCAGGGGCGGATCCAGGAATTCTGGTAAAGGGGCGTGATTACTTTTCAAGAGG
Unaligned ( gi|25 ): CAAGGGCGGATTCAGGAGTTGTGGTTAGGGGGGCGTGGATTTTTTTTCAGA
Unaligned ( gi|26 ): TGACAGAGGCGGATCCAGGAATTCTGGTTAGGGGG
Alignments
lowQualScore : 1 111 11 1111 111 11111111111111111111111111 111 1111 11 1111 222222 222222222222222222 2222 111111 333333333333 111 11111 11111 22222222 22 22222 2222222 111 33333333333 444444444444444444 44444444444444444444444 44444444444444444444444444444444444444444444 4444444444444444 11111111 2222222222222 1111 1111 5555555 1 1 111111 1111 1111111 1 2 111111 33333333333333333 11 11111 111111 222
lowQualScore : 4 6 99 6 5 000 5 5 5 99 5 5 8888 5 77 1 5 5 7777 111 5 5 44444444444444444444444444 5 5 5 333 5 0000 55 4444 444444 999999999999999999 3 1111 77 5 5 666666 666666666666 5 77 000 22222 5 5 66666 11111111 55 66666 888 6 6 1111111 6 111 6 6 11111111111 6 1 999999999999999999 2 22222222222222222222222 44 99 1 0 88888888888888888888888888888888888888888888 5 77 5 666 5 0 1111111111111111 0 77 5 1 777 1 5 5 88888888 5 77 3333333333333 5 2222 4444 1 3 2222222 2 3 999999 6 8888 77 8888888 1 3 1 5 77 1 0 5 5 66 5 222222 88888888888888888 99 1 11 8 88888 6 111111 1 77 8888 1 8 8 444
lowQualScore : . . .. . . ... . . . .. . . .... . .. . . . .... ... . . .......................... . . . ... . .... .. .... ...... .................. . .... .. . . ...... ............ . .. ... ..... . . ..... ........ .. ..... ... . . ....... . ... . . ........... . . .................. . ....................... .. .. . . ............................................ . .. . ... . . ................ . .. . . ... . . . ........ . .. ............. . .... .... . . ....... . . ...... . .... .. ....... . . . . .. . . . . .. . ...... ................. .. . .. . ..... . ...... . .. .... . . . ...
lowQualScore : 0 7 22 7 7 000 7 7 7 33 7 7 0000 7 99 7 0 0 5555 222 0 0 00000000000000000000000000 0 0 0 888 0 6666 88 2222 000000 000000000000000000 2 7777 99 7 7 444444 333333333333 7 99 000 99999 7 7 77777 88888888 00 22222 777 7 7 7777777 7 777 7 7 77777777777 7 7 222222222222222222 5 88888888888888888888888 55 22 7 1 11111111111111111111111111111111111111111111 7 99 7 111 7 7 9999999999999999 7 99 7 7 777 4 7 7 11111111 7 99 1111111111111 7 1111 2222 0 2 5555555 3 3 222222 3 8888 44 6666666 7 0 4 7 99 1 9 0 0 99 7 666666 88888888888888888 22 7 00 0 44444 7 666666 9 99 9999 0 0 0 000
consensus : AGCTTA-AAA--TCAT-TTT-C---CGTTT-CG-TTC-CG--CA-TTTAG-C--A-ATA-CCC--TCTTAT-GA-CGT----CAC-C-T-GA-GACACT--T-G---C-AT--T---TA-G---C-CACT-AT-A---TT-AA----TTT--ATGTG----ACAAA-----TGACCAGA---TTTAT-A------TTGACTCCATGCATG--GACT-G-G------TG-A--T-G-C---CAG-AC--T---TTC-AA--GAGT-G-AAAG-----GACTTTA------ACTT-AATATATAC--G-AGGGAC-T-GGAC-C-A-------GTTTT-TT---AG-TC-ACA-----------TGGAA-CTAGG-GCG---------GGG-GGGGGGGGGGGGG----GGG------GAGAG-GGNGGGCGGGGGGGGGGGGG--GGGGGGGGGGGGGTATGTAC----------ATTTA-G---TACCA--TT-GGAC-TAAAAC--CTCGGCTT-GA--C-ATT-A-TTC-ACTGCC--ACT-----------GGCCAGCCC--ACAG-AGAATT-TGTAATA-TTC-TATCAATA--------GATA-ATC--T--------GTG-GTTTTAAAGG-A----ATTATA----TCNAACTAACTTACTGTAAACATAAGGT-------TGGGCG-TAC------CTAAGCGCT--GTTTTT-G-------ATAAACGATGT-C-GT--A-CCGGACC-TAATA-TT--G-ACATAA-A----ATT--GT-G-TTT-----G-CAGTT--TTACC--TCC-GC----CTCTT-CCAAGTANCCTATATTTT--TAATT--TTGCAATG-A-CAATAGACG-ATCGTGA
Reference ( family-526 ) : AGCTNA-AAA--TCAT-TTT-C---CGTTT-CG-TTC-CG--CA-TTTAG-C--A-ATA-CCC--TCTTAT-GA-CGT----CAC-C-T-GA-GACACT--T-G---C-AT--T---TA-G---C-CACT-AT-A---TT-AA----TTT--ATGTG----ACAAA-----TGACCAGA---TTTAT-A------TTGACTCCGTGCATG--GACT-G-G------TG-A--T-G-C---CAG-AC--T---TTC-AA--GAGT-G-AAAG-----GACTTTA------ACTT-AATATATAC--G-AGGGAC-T-GGAC-C-A-------GTTTT-TT---AG-TC-ACA-----------TGGAA-CTAGGAGCG---------GGG-GGGGGGGGGGGGG----GGG------GAGAG-GGNGGGCGGGGGGGGGGGGG--GGGGGGGGGGGGGTATGTAC----------ATTTA-G---TACCA--TT-GGAC-TAAAAC--CTCGGCTT-GA--C-ATT-A-TTC-ACTGCC--ACT-----------GGCCAGCCC--ACAG-AGAATT-TGTAATA-TTC-TATCAATA--------GATA-ATC--T--------GTG-GTTTTAAAGG-A----ATTATA----TCNAACTAACTTACTGTAAACATAAGGT-------TGAGCG-TAC------CTAAGCGCT--GTTTTT-G-------ATAAACGATGT-C-GT--ATCCGGACC-TAATA-TT--G-ACATAA-A----ATT--GT-G-TTT-----G-CAGTT--TTACC--TCC-GC----CTCTT-CCAAGTANCCTATATTTT--TAATT--TTGNAATG-A-CAATAGACG-NTCGTGA
gi|1 : AGCTTA-AA---TCAT-TTT-C---CGTTT-CG-TTC-CG--CA-TTTAG-C--A-ATATCCC--TCTTAT-GA-CGT----AAC-C-T-GA-GACACT--T-G---C-AT--T---TA-G---C-CACT-AT-A---TT-AA----TTT--ATGTG----ACAA------TCACCAAAATGTTTAT-A------TTGACTCCATGCATG--GACT-G-G------TG-A--T-G-C---CAG-AC--T---TTC-AA--GAGT-G-AAAG-----GACTTTA------ACTA-AATATATAC--A-AGGGAC-T-GGAC-C-A-------GTTTT-TT---AG-TC-ACA-----------TGGAA-CTAGGTACG---------GGGG-GGGGGGGGGGGG----GGG------GAGGG-GGGGGGTGGGGGGGGGGGGG--GGGGGGGGGGGGGTATGTAC----------ATTTG-G---TACCA--TTGGGAC-TAAAAC--CTCGGCTT-GG--C-ATT-A-TTC-ACTGCC--ACT-----------GGCCAGCCC--ACAG-AGAATT-TGTAATA-TTC-TATCAATA--------GATA-ATC--T--------GTG-GTTTTAAAGG-A----ATTATA----TCTAACTAACTTACTGTAAACATAAGGT-------TG-GCG-TGC------CTAAGTGCT--GTTTTTGG-------ATAAACGGTGT-C-GT--ACCCGGACC-TAATA-CT--G-ACATAA-A----ATT--GT-G-TTT-----G-CAGTT--TTACC--TCC-GC----GTCTT-CCAAGTAACCTATATTTT--TAATT--TTGCAATGAA-CAATAGACG-A-CGTGA
gi|11 : GGGGGG--GGGGGGGCGGGGAAA---AC----------ACTAA-G--------------GAC-T--------CCGGCTTTGA--C-ATG-A-TTA-ACTG------------------GGCCAGCCC--ACAG-AG-AT----------TTC-TATCCATA--------GATA-ATCTTT--------GTG-TTTTCAAAGA-A----ATTtt
gi|12 : gtcacatggaatAT-GA-CGT----CAT-C-T-GA-GACAC---T-G---T-AT--T---TA-T---C-CACT-AT-A---TC-AACGTTTTT--A---A----AGAAACTATTTG-CTAG-----TTAT-A------TTGACTCCGTGGATAATGACT-GTGAAATACTG-G--T-G-A---CAG-AC--T---T-------GAGT-G-AA
gi|13 : TTA-AAACTTCAT-GTT-CGTATATTT-TGATTCACGACTA-TTTAG-C--A-ATA-ACC--TCT-AT-GA-CGT----CACACAT-GA-GACACT--T-G---C-TT--T---TA-GCGCC-CACT-ATAA---TT-AA----TT
gi|15 : CTTACAAA--TCAT-TT--C---CGTTT-CG-TTC-CGG-CAGTTTAG-C--C-ATA-CC---TCTTATCGA-CGT----CAC-----GA-GACACT--T-G---C-AT--T---TAGG---C-CACT-AT-A---TT-AA----T
gi|17 : CGGGCC-TAACA-TT--G-ATATTA-T----ATT--AA-G-----------CAGTT--TCTCA--TCC-GC----CTCTT-CCAAGTTTCCTGAAATTT--AAGCT--TTGGAATG-A-CAGTAg
gi|18 : -G-------ATAAACGATGT-C-GT--A-CCGGACG-TAATG-TT--
gi|18 : TTTT-ACAAGTAGCCTATATTTC--TAACT--TTAAAATG-A-CAATAGACG--TCGTGttacaagtagcctatatttctaactttaaaatgacaatagacgtcgtgtt
gi|19 : gataaacgatgtcgtaccggacgtaatgAC-AAGAACGTCTCAGCTA-GA--A-ATT-A-TTC-ACTGCC------------------------C--ACAG-AGTATT-GGCAATG-TTC-TATCAAAA--------GAtt
gi|2 : agaggaaaAGCTTA-AAA--TCAT-TTTTC---CGTTT-CG-TTC-CG--CA-TTTAGGC--A-ATA-CCC--TCTTAT-GA-CGTTT--CAC-C-T-GA-GACACT--TTG---CCATAAT---TA-G---C--ACT-AT-AC--TT-AA----TTT--ATGTG----ACAAA-----TGACCA-A---TTT-T-A------TTGACTCC----ATG--GACT-G-G------TG-A--TTGTC---CAG-AC--T---TTT-CA--GAGT-G-AAAG-----GACTTTA------ACTT--ATATATAA--G--GGGAC-TGGGAC-C-A-------GTTTTGTT---AG-TC-ACA-----------TGGAA-CTGGGGGTG---------GGG-GGTGGGCGG
gi|2 : aGGGGGTG--GGGGGTGGGCGGTTATGTACCATATAGCACATTT--G---TACCA--TT-G-AC-TAAAAC---TCG--TT-GA--C-ATTTA-TTCCACTGCC--ACT-----------GGCCAGCCC--ACAG-AGAATT-T-TAATA-TTC-TATCAATAGATAAATAGATA-ATC--T--------GT--GTTTCAAAGGAA----ATTATA----TCTAACTAACTTTCTGTAAACATAAGGT-------TG-GCGTTAC------CTAAGTGCTCGGTTTTC-G-------AT-AACGATGTCC-GT--A-CCGGACC-TAATATTT--GCACATAA-A----ATT--GA-T-TTT-----G-CAG-T--TTACC--TCCGGC----CTCTT-CCAAGTAAAC-----------AA----TTGCAATG-ATCAATAGACGTTTCGTAAttatgtaccatatagcacatttgtaccattgactaaaactcgttgacatttattccactgccactggccagcccacagagaattttaatattctatcaatagataaatagataatctgtgtttcaaaggaaattatatctaactaactttctgtaaacataaggttggcgttacctaagtgctcggttttcgataacgatgtccgtaccggacctaatatttgcacataaaattgattttgcagtttacctccggcctcttccaagtaaacaattgcaatgatcaatagacgtttcgtaat
gi|3 : aagcttaaaatcatttttccgtttcgttccgcatttaggcaataccctcttatgacgtttcacctgagacactttgccataattagcactatacttaatttatgtgacaaatgaccaattttattgactccatggactggtgattgtccagacttttcagagtgaaaggactttaacttatatataaggggactgggaccagttttgttagtcacatggaactCATG--GACT-G-G------TG-A--T-GTC---CAGCAC--T---TTCCAA--GAGT-G-AAAG------ACTT-A------ACTTTAATATATA-----AGGGAC-T-GGAC-C-A-------GTTTT-TT---AG-TCCACA-----------TGGAA-CTAGG----------------------GG---------------------------------GGGGGGGGGGGG--GGGGGGGGGGGGGTATGTAC----------ATTTT-G---TACCA--TT-G----CAAAAG--CTCGGCTT-GA--CAATT-AGTTC--CTGCC--ACT-----------GG-CAGCCC--ACAGAAGAATTGTGT-ATACTTCTTAACAATA--------GATAGATC--T--------GT--GTTTTAAGGA-A----ATTATA----TCTAACTAACTTACTGTCAACACAAGGT-------TGGGCGCTAC------CTAAGTGCT--G-TTTT-G-------ATAAACGGTCT-C-GT--A-CCGGA-C-TAATA--T--G-ACATAA-A------T--GT-G-TT---------ATTT--TTAt
gi|3 : TATTTT--TAATTCGTTGCAATG-A-CAATAGACA-ATCGTGAattcgttgcaatgacaatagacaatcgtga
gi|4 : catggactggtgatgtccagcactttccaagagtgaaagacttaactttaatatataagggactggaccagttttttagtccacatggaactagggggggggggggggggggggggggggggtatgtacattttgtaccattgcaaaagctcggcttgacaattagttcctgccactggcagcccacagaagaattgtgtatacttcttaacaatagatagatctgtgttttaaggaaattatatctaactaacttactgtcaacacaaggttgggcgctacctaagtgctgttttgataaacggtctcgtaccggactaatatgacataaatgtgtGGGGGGAGGTATGTAC----------AATTATG---TACTAAATT-G-ACATAAAAC---TCGGCTT-GAGAC-ATA-T-TTC-ACTGCCCAACTAATAGATCGAGGACCAGTCCCTACAA-AGAATT-GGTATTA------ATGAATT--------GATA-CTC--T--------GT------TAAAGG-AGGAAATTGTACACTTCAGACT--TTCACTTTAAAAAACAGATAC-----CGAGGA-TAC------TTAGGCTCT---TTTTT-GGAATTGAATTAACGATGTTC-GTTAATCCAGATCGTAATA-TTTTG-ACAACA-ACCATATT--GTTG-TTTT----GTCAGTT--T-ACCCTTCC-GC----TTCTTTCCAAGTATTCC---TTTTAATAATC--TTATAAT
gi|5 : TT-C---CGTGTGCG-TTC--G--CA-TTTAG-C--ATGTA-CCCCCTCTTAC-GT-CGCTGTCCCC-C-TCAA-GACAATGTT-GAGCC-TT--T---TA-G---CGCACT-AT-A---TTTAA----TTT--ATGTG----ACGA------TGACTCAA---TGTAT-GACGTGCCTACCTCCACGTTCG--CACT-G-T------CG------------CAG-CC--TCTGTTC-A---GAGTTGTAAAG-----GATCTTATTAAAGACTTTAATATATAC--GGAGGGAA-A-GGAC-C-A-------GTTTT-TT---AG-TC-ACA-----------TGGAATCTATGAGCG---------AGG-CGGGGGGGTGGCGCGCCGGGCGTGCAGAGAG-CGCGGGCAGCGGGGGCGCGGCCCGGGGGGGTGGGTTATGTAC----------A
gi|6 : GGGGG--AAAAGGGAGGGGATACCAAC----------GCCTA-GAGATA--A-----AGACATAGAAGA-CTCGGCTA-GA--C-ATT-A-TTC-ACT-------------------GGCCAGCCC--TCAG-AGAATT-TGTAATA-TTA-TATCAATA--------GATT-GTG--T--------TTGTGTTTTAAAAG-A----TTTATA----TCGAAATAATTTACTGTTATCATAAAATCCGTTGATGAGCG-TAT------CTAAGGACT--G-TTTT-G-------AAAAACGAT-T-CAGT--ATCAGG-CC-TAATA-TT--G-ACCTAG-A----AATAAGT-GATTTTTTCCC-CAATTTCTTATT--TCC-ACTATTTTCTT-CCCAATA---TATAATGG--TAATC--TTc
gi|7 : gttacaaggaacaGCT-A-AAA--TCATATTT-C---CGTTT-CG-TTC-CGG-CA-TTTAG-CCAA-ATA-CCT--CTTTAT-GAACGT----CAC-C-T-GAAGACACG--T-G---C-AT--TGTATG-T---C-CACT-AT-AATATT-AA----TTTT-ATGTG----GCAAA-----TGACCA-A---TTC-T-A------TTG-CTC----CATG--GACTGG-G------TGTAGTT-G-TCCGCAG-ACAAT---TTC-AAGTGAGT-G-CGAGATAGTGACTGT-------ACTT--ATA-ATACCTA-AGGGAC-T-GGAC-C-AACTCTCGGTTTT-TA---AGCTC-ACAATGGCAGCGGGCGGAT-CCAGGAATGTCTAGTTTAGGG-GGGGGGGGGG
gi|8 : AGCT-A-AAA--TCAT-TTT-C---CGTTT-CG-TTC-CG---A-TTTAG-C--A-ATA-CCC--T-TAAT-GA-CGT----CAC-CTT-GA-GA--------A---C-A----------------CACTGAT-A---TT--A----TTTCAATGTGTAAAACAAA-----TGACCAGA---TTTGCGA------TTGACTCCAT---TG--G-CT-G-G------TG-A--TGG-T---CAG-A---T---TTC-AA--GAGT-G-AAA------GACTTAA------ACTT-TATATATAA--T-AGAGACTT-GGACGCAA-------GTTTT-TTTAAAG-TC-ACA-----------TGGAA-C---------------------GTGGGGGGGGGGG----GGG------GAGAACGGAAGGTGGGGGGGGGGGGcgttggatttttttttc
gi|9 : taA--------GATA-ATC--TTTTAAGTTGTG-TTTTAAAAGA-A----ATAATA----TCGAACTCATTAACTGTATACATAAAATCAGTAGGTGGGTG-TACACGTATCTAAGGACA--GGTTT--G-------AAAAACGATAC-A-GT--A-CCGGGCC-TAATA-TT--G-ACCTAACA----ATc
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GGGGGGGGGGGGGGGGTGGGGGGGGGGGCTACTATTTACATGGATATTGAAATAAGTAGGGCCCCTTAGTTTCATTTCTACAGTACACATCTTTATCTTTCTTTACAGTACATTTAATGGTTGAAATCTTTTGTGTTTTAGAAATTGTGCCT
Unaligned ( gi|14 ): GCAGGGGCGGATCCAGGAATTCTGGTTAGGGGGGGCGTGGATTTTTTTTTTTCAGAGGCAGGGGGTCTGGGGGCCGCCTTAAGGCCCCTAGT
Unaligned ( gi|16 ): AGGGGCGGATCCAGGAATTCTGGTTAGGTGGGGGGGGGGCATTGATAATTTTTTGTTTCACTGAGGCAGTGGGTCCATGGGCAAGGC
Unaligned ( gi|20 ): CAGGGGCGGATCCAGGAATTCTTGGTAGGGGGGGCGGGATTTTTTTTTCAGAGGCAGGG
Unaligned ( gi|21 ): GGGGCGGAATCCAGAATTCTGGTTGGGGGGGGGGGGGGCGTGGATTTTTTTCAGA
Unaligned ( gi|22 ): AGGGGCGGATCCAGGAATCCTGGTTAGGGAGGGCGTGGATTTTTTTTCAGAGGCA
Unaligned ( gi|23 ): CAGGGCGGATCCAGGAATTCTGGTTAGAGGGGCATGGATTTTTTTCAGAGGCAG
Unaligned ( gi|24 ): TGCAGGGGCGGATCCAGGAATTCTGGTAAAGGGGCGTGATTACTTTTCAAGAGG
Unaligned ( gi|25 ): CAAGGGCGGATTCAGGAGTTGTGGTTAGGGGGGCGTGGATTTTTTTTCAGA
Unaligned ( gi|26 ): TGACAGAGGCGGATCCAGGAATTCTGGTTAGGGGG
Alignments
lowQualScore : 111 11 1111 111 11111111111111111111111111 111 1111 11 1111 222222 222222222222222222 1111111 111111 333333333333 111 11111 11111 22222222 22 22222 2222222 111 6666666666666666666666666666666 22222222222222222222222 44444444444444444444444444444444444444444444 4444444444444444 11111111 2222222222222 1111 1111 555555555 1 111111 1111 1111111 1 1 111111 33333333333333333 11 11111 111111 11
lowQualScore : 6 99 6 5 000 5 5 5 99 5 5 8888 5 77 1 5 5 7777 111 5 5 44444444444444444444444444 5 5 5 333 5 0000 55 4444 444444 999999999999999999 3 0000000 5 5 666666 666666666666 5 77 000 22222 5 5 66666 11111111 55 66666 888 6 6 1111111 6 111 6 6 6 6 6 9999999999999999999999999999999 2 77777777777777777777777 44 99 1 0 88888888888888888888888888888888888888888888 5 77 5 666 5 0 1111111111111111 0 77 5 1 777 1 5 5 88888888 5 77 3333333333333 5 2222 4444 1 3 222222222 3 999999 6 8888 77 8888888 1 3 1 5 77 1 5 5 66 5 222222 88888888888888888 99 1 11 8 88888 6 111111 1 77 8888 1 8 8 44
lowQualScore : . .. . . ... . . . .. . . .... . .. . . . .... ... . . .......................... . . . ... . .... .. .... ...... .................. . ....... . . ...... ............ . .. ... ..... . . ..... ........ .. ..... ... . . ....... . ... . . . . . ............................... . ....................... .. .. . . ............................................ . .. . ... . . ................ . .. . . ... . . . ........ . .. ............. . .... .... . . ......... . ...... . .... .. ....... . . . . .. . . . .. . ...... ................. .. . .. . ..... . ...... . .. .... . . . ..
lowQualScore : 7 22 7 7 000 7 7 7 33 7 7 0000 7 99 7 0 0 5555 222 0 0 00000000000000000000000000 0 0 0 888 0 6666 88 2222 000000 000000000000000000 2 9999999 7 7 444444 333333333333 7 99 000 99999 7 7 77777 88888888 00 22222 777 7 7 7777777 7 777 7 7 7 7 7 7777777777777777777777777777777 5 88888888888888888888888 55 22 7 1 11111111111111111111111111111111111111111111 7 99 7 111 7 7 9999999999999999 7 99 7 7 777 4 7 7 11111111 7 99 1111111111111 7 1111 2222 0 2 777777777 3 222222 3 8888 44 6666666 7 0 4 7 99 4 0 0 99 7 666666 88888888888888888 22 7 00 0 44444 7 666666 9 99 9999 0 0 0 77
consensus : AGCTTA-AAA--TCAT-TTT-C---CGTTT-CG-TTC-CG--CA-TTTAG-C--A-ATA-CCC--TCTTAT-GA-CGT----CAC-C-T-GA-GACACT--T-G---C-AT--T---TA-G---C-CACT-AT-A---TT-AA----TTT--ATGTG----ACAAA-----TGACCAGA---TTTAT-A------TTGACTCCATGCATG--GACT-G-G------TG-A--T-G-C---CAG-AC--T---TTC-AA--GAGT-G-AAAG-----GACTTTA------ACTT-AATATATAC--G-AGGGAC-T-GGAC-C-A-------GTTTT-TT---AG-TC-AC-ATGG-AA-CTA-GG-GCGG-----GG-GGGG---------GGGGGGGGG----GGG------GAGAG-GGNGGGCGGGGGGGGGGGGG--GGGGGGGGGGGGGTATGTAC----------ATTTA-G---TACCA--TT-GGAC-TAAAAC--CTCGGCTT-GA--C-ATT-A-TTC-ACTGCC--ACT-----------GGCCAGCCC--ACAG-AGAATT-TGTAATA-TTC-TATCAATA--------GATA-ATC--T--------GTG-GTTTTAAAGG-A----ATTATA----TCNAACTAACTTACTGTAAACATAAGGT-------TGGGCG-TAC------CTAAGCGCT--GTTTTT-G-------ATAAACGATGT-C-GT--A-CCGGACC-TAATA-TT--G-ACATAA-A----ATT--GT-G-TTT-----G-CAGTT--TTACC--TCC-GC----CTCTT-CCAAGTANCCTATATTTT--TAATT--TTGCAATG-A-CAATAGACGATCGTGA
Reference ( family-526 ) : AGCTTA-AAA--TCAT-TTT-C---CGTTT-CG-TTC-CG--CA-TTTAG-C--A-ATA-CCC--TCTTAT-GA-CGT----CAC-C-T-GA-GACACT--T-G---C-AT--T---TA-G---C-CACT-AT-A---TT-AA----TTT--ATGTG----ACAAA-----TGACCAGA---TTTAT-A------TTGACTCCATGCATG--GACT-G-G------TG-A--T-G-C---CAG-AC--T---TTC-AA--GAGT-G-AAAG-----GACTTTA------ACTT-AATATATAC--G-AGGGAC-T-GGAC-C-A-------GTTTT-TT---AG-TC-AC-ATGG-AA-CTA-GG-GCGG-----GG-GGGG---------GGGGGGGGG----GGG------GAGAG-GGNGGGCGGGGGGGGGGGGG--GGGGGGGGGGGGGTATGTAC----------ATTTA-G---TACCA--TT-GGAC-TAAAAC--CTCGGCTT-GA--C-ATT-A-TTC-ACTGCC--ACT-----------GGCCAGCCC--ACAG-AGAATT-TGTAATA-TTC-TATCAATA--------GATA-ATC--T--------GTG-GTTTTAAAGG-A----ATTATA----TCNAACTAACTTACTGTAAACATAAGGT-------TGGGCG-TAC------CTAAGCGCT--GTTTTT-G-------ATAAACGATGT-C-GT--A-CCGGACC-TAATA-TT--G-ACATAA-A----ATT--GT-G-TTT-----G-CAGTT--TTACC--TCC-GC----CTCTT-CCAAGTANCCTATATTTT--TAATT--TTGCAATG-A-CAATAGACGATCGTGA
gi|1 : AGCTTA-AA---TCAT-TTT-C---CGTTT-CG-TTC-CG--CA-TTTAG-C--A-ATATCCC--TCTTAT-GA-CGT----AAC-C-T-GA-GACACT--T-G---C-AT--T---TA-G---C-CACT-AT-A---TT-AA----TTT--ATGTG----ACAA------TCACCAAAATGTTTAT-A------TTGACTCCATGCATG--GACT-G-G------TG-A--T-G-C---CAG-AC--T---TTC-AA--GAGT-G-AAAG-----GACTTTA------ACTA-AATATATAC--A-AGGGAC-T-GGAC-C-A-------GTTTT-TT---AG-TC-AC-ATGG-AA-CTA-GGTACGG-----GGG-GGG---------GGGGGGGGG----GGG------GAGGG-GGGGGGTGGGGGGGGGGGGG--GGGGGGGGGGGGGTATGTAC----------ATTTG-G---TACCA--TTGGGAC-TAAAAC--CTCGGCTT-GG--C-ATT-A-TTC-ACTGCC--ACT-----------GGCCAGCCC--ACAG-AGAATT-TGTAATA-TTC-TATCAATA--------GATA-ATC--T--------GTG-GTTTTAAAGG-A----ATTATA----TCTAACTAACTTACTGTAAACATAAGGT-------T-GGCG-TGC------CTAAGTGCT--GTTTTTGG-------ATAAACGGTGT-C-GT--ACCCGGACC-TAATA-CT--G-ACATAA-A----ATT--GT-G-TTT-----G-CAGTT--TTACC--TCC-GC----GTCTT-CCAAGTAACCTATATTTT--TAATT--TTGCAATGAA-CAATAGACGA-CGTGA
gi|11 : GGGGGG--GGGGGGGCGGGGAAA---AC----------ACTAA-G--------------GAC-T--------CCGGCTTTGA--C-ATG-A-TTA-ACTG------------------GGCCAGCCC--ACAG-AG-AT----------TTC-TATCCATA--------GATA-ATCTTT--------GTG-TTTTCAAAGA-A----ATTtt
gi|12 : gtcacatggaatAT-GA-CGT----CAT-C-T-GA-GACAC---T-G---T-AT--T---TA-T---C-CACT-AT-A---TC-AACGTTTTT--A---A----AGAAACTATTTG-CTAG-----TTAT-A------TTGACTCCGTGGATAATGACT-GTGAAATACTG-G--T-G-A---CAG-AC--T---T-------GAGT-G-AA
gi|13 : TTA-AAACTTCAT-GTT-CGTATATTT-TGATTCACGACTA-TTTAG-C--A-ATA-ACC--TCT-AT-GA-CGT----CACACAT-GA-GACACT--T-G---C-TT--T---TA-GCGCC-CACT-ATAA---TT-AA----TT
gi|15 : CTTACAAA--TCAT-TT--C---CGTTT-CG-TTC-CGG-CAGTTTAG-C--C-ATA-CC---TCTTATCGA-CGT----CAC-----GA-GACACT--T-G---C-AT--T---TAGG---C-CACT-AT-A---TT-AA----T
gi|17 : CGGGCC-TAACA-TT--G-ATATTA-T----ATT--AA-G-----------CAGTT--TCTCA--TCC-GC----CTCTT-CCAAGTTTCCTGAAATTT--AAGCT--TTGGAATG-A-CAGTAg
gi|18 : -G-------ATAAACGATGT-C-GT--A-CCGGACG-TAATG-TT--
gi|18 : TTTT-ACAAGTAGCCTATATTTC--TAACT--TTAAAATG-A-CAATAGACG-TCGTGttacaagtagcctatatttctaactttaaaatgacaatagacgtcgtgtt
gi|19 : gataaacgatgtcgtaccggacgtaatgAC-AAGAACGTCTCAGCTA-GA--A-ATT-A-TTC-ACTGCC------------------------C--ACAG-AGTATT-GGCAATG-TTC-TATCAAAA--------GAtt
gi|2 : agaggaaaAGCTTA-AAA--TCAT-TTTTC---CGTTT-CG-TTC-CG--CA-TTTAGGC--A-ATA-CCC--TCTTAT-GA-CGTTT--CAC-C-T-GA-GACACT--TTG---CCATAAT---TA-G---C--ACT-AT-AC--TT-AA----TTT--ATGTG----ACAAA-----TGACCA-A---TTT-T-A------TTGACTCCATG------GACT-G-G------TG-A--TTGTC---CAG-AC--T---TTT-CA--GAGT-G-AAAG-----GACTTTA------ACTT--ATATATAA--G--GGGAC-TGGGAC-C-A-------GTTTTGTT---AG-TC-AC-ATGG-AA-CTG-GG-GGTG-----GG-GGGT---------GGGCGG
gi|2 : aGGGGGTG--GGGGGTGGGCGGTTATGTACCATATAGCACATTT--G---TACCA--TT-G-AC-TAAAAC---TCG--TT-GA--C-ATTTA-TTCCACTGCC--ACT-----------GGCCAGCCC--ACAG-AGAATT-T-TAATA-TTC-TATCAATAGATAAATAGATA-ATC--T--------GT--GTTTCAAAGGAA----ATTATA----TCTAACTAACTTTCTGTAAACATAAGGT-------T-GGCGTTAC------CTAAGTGCTCGGTTTTC-G-------AT-AACGATGTCC-GT--A-CCGGACC-TAATATTT--GCACATAA-A----ATT--GA-T-TTT-----G-CAG-T--TTACC--TCCGGC----CTCTT-CCAAGTAAAC-----------AA----TTGCAATG-ATCAATAGACGttatgtaccatatagcacatttgtaccattgactaaaactcgttgacatttattccactgccactggccagcccacagagaattttaatattctatcaatagataaatagataatctgtgtttcaaaggaaattatatctaactaactttctgtaaacataaggttggcgttacctaagtgctcggttttcgataacgatgtccgtaccggacctaatatttgcacataaaattgattttgcagtttacctccggcctcttccaagtaaacaattgcaatgatcaatagacgtttcgtaat
gi|3 : aagcttaaaatcatttttccgtttcgttccgcatttaggcaataccctcttatgacgtttcacctgagacactttgccataattagcactatacttaatttatgtgacaaatgaccaattttattgactccatggactggtgattgtccagacttttcagagtgaaaggactttaacttatatataaggggactgggaccagttttgttagtcacatggaactCATG--GACT-G-G------TG-A--T-GTC---CAGCAC--T---TTCCAA--GAGT-G-AAAG------ACTT-A------ACTTTAATATATA-----AGGGAC-T-GGAC-C-A-------GTTTT-TT---AG-TCCAC-ATGG-AA-CTA-GG-G---------------------------G--------------------------------GGGGGGGGGGGG--GGGGGGGGGGGGGTATGTAC----------ATTTT-G---TACCA--TT-G----CAAAAG--CTCGGCTT-GA--CAATT-AGTTC--CTGCC--ACT-----------GG-CAGCCC--ACAGAAGAATTGTGT-ATACTTCTTAACAATA--------GATAGATC--T--------GT--GTTTTAAGGA-A----ATTATA----TCTAACTAACTTACTGTCAACACAAGGT-------TGGGCGCTAC------CTAAGTGCT--G-TTTT-G-------ATAAACGGTCT-C-GT--A-CCGGA-C-TAATA--T--G-ACATAA-A------T--GT-G-TT---------ATTT--TTAtttcgtaat
gi|3 : TATTTT--TAATTCGTTGCAATG-A-CAATAGACAATCGTGAattcgttgcaatgacaatagacaatcgtga
gi|4 : catggactggtgatgtccagcactttccaagagtgaaagacttaactttaatatataagggactggaccagttttttagtccacatggaactagggggggggggggggggggggggggggggtatgtacattttgtaccattgcaaaagctcggcttgacaattagttcctgccactggcagcccacagaagaattgtgtatacttcttaacaatagatagatctgtgttttaaggaaattatatctaactaacttactgtcaacacaaggttgggcgctacctaagtgctgttttgataaacggtctcgtaccggactaatatgacataaatgtgtGGGGGGAGGTATGTAC----------AATTATG---TACTAAATT-G-ACATAAAAC---TCGGCTT-GAGAC-ATA-T-TTC-ACTGCCCAACTAATAGATCGAGGACCAGTCCCTACAA-AGAATT-GGTATTA------ATGAATT--------GATA-CTC--T--------GT------TAAAGG-AGGAAATTGTACACTTCAGACT--TTCACTTTAAAAAACAGATAC-----CGAGGA-TAC------TTAGGCTCT---TTTTT-GGAATTGAATTAACGATGTTC-GTTAATCCAGATCGTAATA-TTTTG-ACAACA-ACCATATT--GTTG-TTTT----GTCAGTT--T-ACCCTTCC-GC----TTCTTTCCAAGTATTCC---TTTTAATAATC--TTATAAT
gi|5 : TT-C---CGTGTGCG-TTC--G--CA-TTTAG-C--ATGTA-CCCCCTCTTAC-GT-CGCTGTCCCC-C-TCAA-GACAATGTT-GAGCC-TT--T---TA-G---CGCACT-AT-A---TTTAA----TTT--ATGTG----ACGA------TGACTCAA---TGTAT-GACGTGCCTACCTCCACGTTCG--CACT-G-T------CG------------CAG-CC--TCTGTTC-A---GAGTTGTAAAG-----GATCTTATTAAAGACTTTAATATATAC--GGAGGGAA-A-GGAC-C-A-------GTTTT-TT---AG-TC-AC-ATGG-AATCTATGA-GCGA-----GG-CGGG---------GGGGTGGCGCGCCGGGCGTGCAGAGAG-CGCGGGCAGCGGGGGCGCGGCCCGGGGGGGTGGGTTATGTAC----------A
gi|6 : GGGGG--AAAAGGGAGGGGATACCAAC----------GCCTA-GAGATA--A-----AGACATAGAAGA-CTCGGCTA-GA--C-ATT-A-TTC-ACT-------------------GGCCAGCCC--TCAG-AGAATT-TGTAATA-TTA-TATCAATA--------GATT-GTG--T--------TTGTGTTTTAAAAG-A----TTTATA----TCGAAATAATTTACTGTTATCATAAAATCCGTTGATGAGCG-TAT------CTAAGGACT--G-TTTT-G-------AAAAACGAT-T-CAGT--A-TCAGGCC-TAATA-TT--G-ACCTAG-A----AATAAGT-GATTTTTTCCC-CAATTTCTTATT--TCC-ACTATTTTCTT-CCCAATA---TATAATGG--TAATC--TTc
gi|7 : gttacaaggaacaTA-AAA--TCATATTT-C---CGTTT-CG-TTC-CGG-CA-TTTAG-CCAA-ATA-CCT--CTTTAT-GAACGT----CAC-C-T-GAAGACACG--T-G---C-AT--TGTATG-T---C-CACT-AT-AATATT-AA----TTTT-ATGTG----GCAAA-----TGACCA-A---TTC-T-A------TTG-CTC----CATG--GACTGG-G------TGTAGTT-G-TCCGCAG-ACAAT---TTC-AAGTGAGT-G-CGAGATAGTGACTGT-------ACTT--ATA-ATACCTA-AGGGAC-T-GGAC-C-AACTCTCGGTTTT-TA---AGCTC-ACAATGGCAG-C---GG-GCGGATCCAGG-AATGTCTAGTTTAGGGGGGGGG----GGG------G
gi|8 : gcAGCT-A-AAA--TCAT-TTT-C---CGTTT-CG-TTC-CG---A-TTTAG-C--A-ATA-CCC--T-TAAT-GA-CGT----CAC-CTT-GA-GA--------A---C-A----------------CACTGAT-A---TT--A----TTTCAATGTGTAAAACAAA-----TGACCAGA---TTTGCGA------TTGACTCCAT---TG--G-CT-G-G------TG-A--TGG-T---CAG-A---T---TTC-AA--GAGT-G-AAA------GACTTAA------ACTT-TATATATAA--T-AGAGACTT-GGACGCAA-------GTTTT-TTTAAAG-TC-AC-ATGG-AA-C------------------GTGG---------GGGGGGGGG----GGG------GAGAACGGAAGGTGGGGGGGGGGGGcgttggatttttttttc
gi|9 : taA--------GATA-ATC--TTTTAAGTTGTG-TTTTAAAAGA-A----ATAATA----TCGAACTCATTAACTGTATACATAAAATCAGTAGGTGGGTG-TACACGTATCTAAGGACA--GGTTT--G-------AAAAACGATAC-A-GT--A-CCGGGCC-TAATA-TT--G-ACCTAACA----ATc
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GGGGGGGGGGGGGGGGTGGGGGGGGGGGCTACTATTTACATGGATATTGAAATAAGTAGGGCCCCTTAGTTTCATTTCTACAGTACACATCTTTATCTTTCTTTACAGTACATTTAATGGTTGAAATCTTTTGTGTTTTAGAAATTGTGCCT
Unaligned ( gi|14 ): GCAGGGGCGGATCCAGGAATTCTGGTTAGGGGGGGCGTGGATTTTTTTTTTTCAGAGGCAGGGGGTCTGGGGGCCGCCTTAAGGCCCCTAGT
Unaligned ( gi|16 ): AGGGGCGGATCCAGGAATTCTGGTTAGGTGGGGGGGGGGCATTGATAATTTTTTGTTTCACTGAGGCAGTGGGTCCATGGGCAAGGC
Unaligned ( gi|20 ): CAGGGGCGGATCCAGGAATTCTTGGTAGGGGGGGCGGGATTTTTTTTTCAGAGGCAGGG
Unaligned ( gi|21 ): GGGGCGGAATCCAGAATTCTGGTTGGGGGGGGGGGGGGCGTGGATTTTTTTCAGA
Unaligned ( gi|22 ): AGGGGCGGATCCAGGAATCCTGGTTAGGGAGGGCGTGGATTTTTTTTCAGAGGCA
Unaligned ( gi|23 ): CAGGGCGGATCCAGGAATTCTGGTTAGAGGGGCATGGATTTTTTTCAGAGGCAG
Unaligned ( gi|24 ): TGCAGGGGCGGATCCAGGAATTCTGGTAAAGGGGCGTGATTACTTTTCAAGAGG
Unaligned ( gi|25 ): CAAGGGCGGATTCAGGAGTTGTGGTTAGGGGGGCGTGGATTTTTTTTCAGA
Unaligned ( gi|26 ): TGACAGAGGCGGATCCAGGAATTCTGGTTAGGGGG
Alignments
lowQualScore : 111 11 1111 111 11111111111111111111111111 111 1111 11 1111 222222 222222222222222222 1111111 111111 333333333333 111 11111 11111 22222222 22 22222 2222222 111 6666666666666666666666666666666 22222222222222222222222 44444444444444444444444444444444444444444444 4444444444444444 11111111 2222222222222 1111 1111 555555555 1 111111 1111 1111111 1 1 111111 33333333333333333 11 11111 111111 11
lowQualScore : 6 99 6 5 000 5 5 5 99 5 5 8888 5 77 1 5 5 7777 111 5 5 44444444444444444444444444 5 5 5 333 5 0000 55 4444 444444 999999999999999999 3 0000000 5 5 666666 666666666666 5 77 000 22222 5 5 66666 11111111 55 66666 888 6 6 1111111 6 111 6 6 6 6 6 9999999999999999999999999999999 2 77777777777777777777777 44 99 1 0 88888888888888888888888888888888888888888888 5 77 5 666 5 0 1111111111111111 0 77 5 1 777 1 5 5 88888888 5 77 3333333333333 5 2222 4444 1 3 222222222 3 999999 6 8888 77 8888888 1 3 1 5 77 1 5 5 66 5 222222 88888888888888888 99 1 11 8 88888 6 111111 1 77 8888 1 8 8 44
lowQualScore : . .. . . ... . . . .. . . .... . .. . . . .... ... . . .......................... . . . ... . .... .. .... ...... .................. . ....... . . ...... ............ . .. ... ..... . . ..... ........ .. ..... ... . . ....... . ... . . . . . ............................... . ....................... .. .. . . ............................................ . .. . ... . . ................ . .. . . ... . . . ........ . .. ............. . .... .... . . ......... . ...... . .... .. ....... . . . . .. . . . .. . ...... ................. .. . .. . ..... . ...... . .. .... . . . ..
lowQualScore : 7 22 7 7 000 7 7 7 33 7 7 0000 7 99 7 0 0 5555 222 0 0 00000000000000000000000000 0 0 0 888 0 6666 88 2222 000000 000000000000000000 2 9999999 7 7 444444 333333333333 7 99 000 99999 7 7 77777 88888888 00 22222 777 7 7 7777777 7 777 7 7 7 7 7 7777777777777777777777777777777 5 88888888888888888888888 55 22 7 1 11111111111111111111111111111111111111111111 7 99 7 111 7 7 9999999999999999 7 99 7 7 777 4 7 7 11111111 7 99 1111111111111 7 1111 2222 0 2 777777777 3 222222 3 8888 44 6666666 7 0 4 7 99 4 0 0 99 7 666666 88888888888888888 22 7 00 0 44444 7 666666 9 99 9999 0 0 0 77
consensus : AGCTTA-AAA--TCAT-TTT-C---CGTTT-CG-TTC-CG--CA-TTTAG-C--A-ATA-CCC--TCTTAT-GA-CGT----CAC-C-T-GA-GACACT--T-G---C-AT--T---TA-G---C-CACT-AT-A---TT-AA----TTT--ATGTG----ACAAA-----TGACCAGA---TTTAT-A------TTGACTCCATGCATG--GACT-G-G------TG-A--T-G-C---CAG-AC--T---TTC-AA--GAGT-G-AAAG-----GACTTTA------ACTT-AATATATAC--G-AGGGAC-T-GGAC-C-A-------GTTTT-TT---AG-TC-AC-ATGG-AA-CTA-GG-GCGG-----GG-GGGG---------GGGGGGGGG----GGG------GAGAG-GGNGGGCGGGGGGGGGGGGG--GGGGGGGGGGGGGTATGTAC----------ATTTA-G---TACCA--TT-GGAC-TAAAAC--CTCGGCTT-GA--C-ATT-A-TTC-ACTGCC--ACT-----------GGCCAGCCC--ACAG-AGAATT-TGTAATA-TTC-TATCAATA--------GATA-ATC--T--------GTG-GTTTTAAAGG-A----ATTATA----TCNAACTAACTTACTGTAAACATAAGGT-------TGGGCG-TAC------CTAAGCGCT--GTTTTT-G-------ATAAACGATGT-C-GT--A-CCGGACC-TAATA-TT--G-ACATAA-A----ATT--GT-G-TTT-----G-CAGTT--TTACC--TCC-GC----CTCTT-CCAAGTANCCTATATTTT--TAATT--TTGCAATG-A-CAATAGACGATCGTGA
Reference ( family-526 ) : AGCTTA-AAA--TCAT-TTT-C---CGTTT-CG-TTC-CG--CA-TTTAG-C--A-ATA-CCC--TCTTAT-GA-CGT----CAC-C-T-GA-GACACT--T-G---C-AT--T---TA-G---C-CACT-AT-A---TT-AA----TTT--ATGTG----ACAAA-----TGACCAGA---TTTAT-A------TTGACTCCATGCATG--GACT-G-G------TG-A--T-G-C---CAG-AC--T---TTC-AA--GAGT-G-AAAG-----GACTTTA------ACTT-AATATATAC--G-AGGGAC-T-GGAC-C-A-------GTTTT-TT---AG-TC-AC-ATGG-AA-CTA-GG-GCGG-----GG-GGGG---------GGGGGGGGG----GGG------GAGAG-GGNGGGCGGGGGGGGGGGGG--GGGGGGGGGGGGGTATGTAC----------ATTTA-G---TACCA--TT-GGAC-TAAAAC--CTCGGCTT-GA--C-ATT-A-TTC-ACTGCC--ACT-----------GGCCAGCCC--ACAG-AGAATT-TGTAATA-TTC-TATCAATA--------GATA-ATC--T--------GTG-GTTTTAAAGG-A----ATTATA----TCNAACTAACTTACTGTAAACATAAGGT-------TGGGCG-TAC------CTAAGCGCT--GTTTTT-G-------ATAAACGATGT-C-GT--A-CCGGACC-TAATA-TT--G-ACATAA-A----ATT--GT-G-TTT-----G-CAGTT--TTACC--TCC-GC----CTCTT-CCAAGTANCCTATATTTT--TAATT--TTGCAATG-A-CAATAGACGATCGTGA
gi|1 : AGCTTA-AA---TCAT-TTT-C---CGTTT-CG-TTC-CG--CA-TTTAG-C--A-ATATCCC--TCTTAT-GA-CGT----AAC-C-T-GA-GACACT--T-G---C-AT--T---TA-G---C-CACT-AT-A---TT-AA----TTT--ATGTG----ACAA------TCACCAAAATGTTTAT-A------TTGACTCCATGCATG--GACT-G-G------TG-A--T-G-C---CAG-AC--T---TTC-AA--GAGT-G-AAAG-----GACTTTA------ACTA-AATATATAC--A-AGGGAC-T-GGAC-C-A-------GTTTT-TT---AG-TC-AC-ATGG-AA-CTA-GGTACGG-----GGG-GGG---------GGGGGGGGG----GGG------GAGGG-GGGGGGTGGGGGGGGGGGGG--GGGGGGGGGGGGGTATGTAC----------ATTTG-G---TACCA--TTGGGAC-TAAAAC--CTCGGCTT-GG--C-ATT-A-TTC-ACTGCC--ACT-----------GGCCAGCCC--ACAG-AGAATT-TGTAATA-TTC-TATCAATA--------GATA-ATC--T--------GTG-GTTTTAAAGG-A----ATTATA----TCTAACTAACTTACTGTAAACATAAGGT-------T-GGCG-TGC------CTAAGTGCT--GTTTTTGG-------ATAAACGGTGT-C-GT--ACCCGGACC-TAATA-CT--G-ACATAA-A----ATT--GT-G-TTT-----G-CAGTT--TTACC--TCC-GC----GTCTT-CCAAGTAACCTATATTTT--TAATT--TTGCAATGAA-CAATAGACGA-CGTGA
gi|11 : GGGGGG--GGGGGGGCGGGGAAA---AC----------ACTAA-G--------------GAC-T--------CCGGCTTTGA--C-ATG-A-TTA-ACTG------------------GGCCAGCCC--ACAG-AG-AT----------TTC-TATCCATA--------GATA-ATCTTT--------GTG-TTTTCAAAGA-A----ATTtt
gi|12 : gtcacatggaatAT-GA-CGT----CAT-C-T-GA-GACAC---T-G---T-AT--T---TA-T---C-CACT-AT-A---TC-AACGTTTTT--A---A----AGAAACTATTTG-CTAG-----TTAT-A------TTGACTCCGTGGATAATGACT-GTGAAATACTG-G--T-G-A---CAG-AC--T---T-------GAGT-G-AA
gi|13 : TTA-AAACTTCAT-GTT-CGTATATTT-TGATTCACGACTA-TTTAG-C--A-ATA-ACC--TCT-AT-GA-CGT----CACACAT-GA-GACACT--T-G---C-TT--T---TA-GCGCC-CACT-ATAA---TT-AA----TT
gi|15 : CTTACAAA--TCAT-TT--C---CGTTT-CG-TTC-CGG-CAGTTTAG-C--C-ATA-CC---TCTTATCGA-CGT----CAC-----GA-GACACT--T-G---C-AT--T---TAGG---C-CACT-AT-A---TT-AA----T
gi|17 : CGGGCC-TAACA-TT--G-ATATTA-T----ATT--AA-G-----------CAGTT--TCTCA--TCC-GC----CTCTT-CCAAGTTTCCTGAAATTT--AAGCT--TTGGAATG-A-CAGTAg
gi|18 : -G-------ATAAACGATGT-C-GT--A-CCGGACG-TAATG-TT--
gi|18 : TTTT-ACAAGTAGCCTATATTTC--TAACT--TTAAAATG-A-CAATAGACG-TCGTGttacaagtagcctatatttctaactttaaaatgacaatagacgtcgtgtt
gi|19 : gataaacgatgtcgtaccggacgtaatgAC-AAGAACGTCTCAGCTA-GA--A-ATT-A-TTC-ACTGCC------------------------C--ACAG-AGTATT-GGCAATG-TTC-TATCAAAA--------GAtt
gi|2 : agaggaaaAGCTTA-AAA--TCAT-TTTTC---CGTTT-CG-TTC-CG--CA-TTTAGGC--A-ATA-CCC--TCTTAT-GA-CGTTT--CAC-C-T-GA-GACACT--TTG---CCATAAT---TA-G---C--ACT-AT-AC--TT-AA----TTT--ATGTG----ACAAA-----TGACCA-A---TTT-T-A------TTGACTCCATG------GACT-G-G------TG-A--TTGTC---CAG-AC--T---TTT-CA--GAGT-G-AAAG-----GACTTTA------ACTT--ATATATAA--G--GGGAC-TGGGAC-C-A-------GTTTTGTT---AG-TC-AC-ATGG-AA-CTG-GG-GGTG-----GG-GGGT---------GGGCGG
gi|2 : aGGGGGTG--GGGGGTGGGCGGTTATGTACCATATAGCACATTT--G---TACCA--TT-G-AC-TAAAAC---TCG--TT-GA--C-ATTTA-TTCCACTGCC--ACT-----------GGCCAGCCC--ACAG-AGAATT-T-TAATA-TTC-TATCAATAGATAAATAGATA-ATC--T--------GT--GTTTCAAAGGAA----ATTATA----TCTAACTAACTTTCTGTAAACATAAGGT-------T-GGCGTTAC------CTAAGTGCTCGGTTTTC-G-------AT-AACGATGTCC-GT--A-CCGGACC-TAATATTT--GCACATAA-A----ATT--GA-T-TTT-----G-CAG-T--TTACC--TCCGGC----CTCTT-CCAAGTAAAC-----------AA----TTGCAATG-ATCAATAGACGttatgtaccatatagcacatttgtaccattgactaaaactcgttgacatttattccactgccactggccagcccacagagaattttaatattctatcaatagataaatagataatctgtgtttcaaaggaaattatatctaactaactttctgtaaacataaggttggcgttacctaagtgctcggttttcgataacgatgtccgtaccggacctaatatttgcacataaaattgattttgcagtttacctccggcctcttccaagtaaacaattgcaatgatcaatagacgtttcgtaat
gi|3 : aagcttaaaatcatttttccgtttcgttccgcatttaggcaataccctcttatgacgtttcacctgagacactttgccataattagcactatacttaatttatgtgacaaatgaccaattttattgactccatggactggtgattgtccagacttttcagagtgaaaggactttaacttatatataaggggactgggaccagttttgttagtcacatggaactCATG--GACT-G-G------TG-A--T-GTC---CAGCAC--T---TTCCAA--GAGT-G-AAAG------ACTT-A------ACTTTAATATATA-----AGGGAC-T-GGAC-C-A-------GTTTT-TT---AG-TCCAC-ATGG-AA-CTA-GG-G---------------------------G--------------------------------GGGGGGGGGGGG--GGGGGGGGGGGGGTATGTAC----------ATTTT-G---TACCA--TT-G----CAAAAG--CTCGGCTT-GA--CAATT-AGTTC--CTGCC--ACT-----------GG-CAGCCC--ACAGAAGAATTGTGT-ATACTTCTTAACAATA--------GATAGATC--T--------GT--GTTTTAAGGA-A----ATTATA----TCTAACTAACTTACTGTCAACACAAGGT-------TGGGCGCTAC------CTAAGTGCT--G-TTTT-G-------ATAAACGGTCT-C-GT--A-CCGGA-C-TAATA--T--G-ACATAA-A------T--GT-G-TT---------ATTT--TTAtttcgtaat
gi|3 : TATTTT--TAATTCGTTGCAATG-A-CAATAGACAATCGTGAattcgttgcaatgacaatagacaatcgtga
gi|4 : catggactggtgatgtccagcactttccaagagtgaaagacttaactttaatatataagggactggaccagttttttagtccacatggaactagggggggggggggggggggggggggggggtatgtacattttgtaccattgcaaaagctcggcttgacaattagttcctgccactggcagcccacagaagaattgtgtatacttcttaacaatagatagatctgtgttttaaggaaattatatctaactaacttactgtcaacacaaggttgggcgctacctaagtgctgttttgataaacggtctcgtaccggactaatatgacataaatgtgtGGGGGGAGGTATGTAC----------AATTATG---TACTAAATT-G-ACATAAAAC---TCGGCTT-GAGAC-ATA-T-TTC-ACTGCCCAACTAATAGATCGAGGACCAGTCCCTACAA-AGAATT-GGTATTA------ATGAATT--------GATA-CTC--T--------GT------TAAAGG-AGGAAATTGTACACTTCAGACT--TTCACTTTAAAAAACAGATAC-----CGAGGA-TAC------TTAGGCTCT---TTTTT-GGAATTGAATTAACGATGTTC-GTTAATCCAGATCGTAATA-TTTTG-ACAACA-ACCATATT--GTTG-TTTT----GTCAGTT--T-ACCCTTCC-GC----TTCTTTCCAAGTATTCC---TTTTAATAATC--TTATAAT
gi|5 : TT-C---CGTGTGCG-TTC--G--CA-TTTAG-C--ATGTA-CCCCCTCTTAC-GT-CGCTGTCCCC-C-TCAA-GACAATGTT-GAGCC-TT--T---TA-G---CGCACT-AT-A---TTTAA----TTT--ATGTG----ACGA------TGACTCAA---TGTAT-GACGTGCCTACCTCCACGTTCG--CACT-G-T------CG------------CAG-CC--TCTGTTC-A---GAGTTGTAAAG-----GATCTTATTAAAGACTTTAATATATAC--GGAGGGAA-A-GGAC-C-A-------GTTTT-TT---AG-TC-AC-ATGG-AATCTATGA-GCGA-----GG-CGGG---------GGGGTGGCGCGCCGGGCGTGCAGAGAG-CGCGGGCAGCGGGGGCGCGGCCCGGGGGGGTGGGTTATGTAC----------A
gi|6 : GGGGG--AAAAGGGAGGGGATACCAAC----------GCCTA-GAGATA--A-----AGACATAGAAGA-CTCGGCTA-GA--C-ATT-A-TTC-ACT-------------------GGCCAGCCC--TCAG-AGAATT-TGTAATA-TTA-TATCAATA--------GATT-GTG--T--------TTGTGTTTTAAAAG-A----TTTATA----TCGAAATAATTTACTGTTATCATAAAATCCGTTGATGAGCG-TAT------CTAAGGACT--G-TTTT-G-------AAAAACGAT-T-CAGT--A-TCAGGCC-TAATA-TT--G-ACCTAG-A----AATAAGT-GATTTTTTCCC-CAATTTCTTATT--TCC-ACTATTTTCTT-CCCAATA---TATAATGG--TAATC--TTc
gi|7 : gttacaaggaacaTA-AAA--TCATATTT-C---CGTTT-CG-TTC-CGG-CA-TTTAG-CCAA-ATA-CCT--CTTTAT-GAACGT----CAC-C-T-GAAGACACG--T-G---C-AT--TGTATG-T---C-CACT-AT-AATATT-AA----TTTT-ATGTG----GCAAA-----TGACCA-A---TTC-T-A------TTG-CTC----CATG--GACTGG-G------TGTAGTT-G-TCCGCAG-ACAAT---TTC-AAGTGAGT-G-CGAGATAGTGACTGT-------ACTT--ATA-ATACCTA-AGGGAC-T-GGAC-C-AACTCTCGGTTTT-TA---AGCTC-ACAATGGCAG-C---GG-GCGGATCCAGG-AATGTCTAGTTTAGGGGGGGGG----GGG------G
gi|8 : gcAGCT-A-AAA--TCAT-TTT-C---CGTTT-CG-TTC-CG---A-TTTAG-C--A-ATA-CCC--T-TAAT-GA-CGT----CAC-CTT-GA-GA--------A---C-A----------------CACTGAT-A---TT--A----TTTCAATGTGTAAAACAAA-----TGACCAGA---TTTGCGA------TTGACTCCAT---TG--G-CT-G-G------TG-A--TGG-T---CAG-A---T---TTC-AA--GAGT-G-AAA------GACTTAA------ACTT-TATATATAA--T-AGAGACTT-GGACGCAA-------GTTTT-TTTAAAG-TC-AC-ATGG-AA-C------------------GTGG---------GGGGGGGGG----GGG------GAGAACGGAAGGTGGGGGGGGGGGGcgttggatttttttttc
gi|9 : taA--------GATA-ATC--TTTTAAGTTGTG-TTTTAAAAGA-A----ATAATA----TCGAACTCATTAACTGTATACATAAAATCAGTAGGTGGGTG-TACACGTATCTAAGGACA--GGTTT--G-------AAAAACGATAC-A-GT--A-CCGGGCC-TAATA-TT--G-ACCTAACA----ATc
blockSeqs : C CT A T GTA G A A AC G G CAA . CC T C A TGTC ACA C A TGTTGAGCCTTTTAG G G A ATA T CGTT CA TAAA ACTATT AATGTATGACGTGC A GGATAAT G T AAATAC TAGTTGTCCG C AA CTG AAGT T T ATAGT TATTAAAG TA CCTA TG G A ACTCTCG G TAA C C A C T GGGCGGATCCAGGAATGTCTAGTTTA G CGCCGGGCGTGCAGAGAGCGCG CA CC A CATATAGCACATTTGTACCATTGACTAAAAC T GA A TA C CAACTAATAGATCGAG CT A T GTG A C T GATAAATA G TT TTTAAGTTGTGT A GGAA CACT T A CCGTTGATG T ACGTAT T CGGT C GAATTGA A G C A TA T G T TT C ACCAT AAGTGATTTTTTCCC TC C CT G TATTT T TCCTGA A AA TTCG G . T AT
blockSeqs : . . . . . . . . G . . AT . . T . . TT CT . . TTTGCCATAATTAG . . . C . . T . A GATTTGCGA A GTTCG . . . ATTGTC . . . CAA . . . TA TA CGG TT . . . . . . . . . . TATGAGCGAGGCGGG T GGGGAGAACGGAA TG . T AATTATGTACTAAATTGACATAAAAC . . . AG . ACT . . A GG A . . . . . TTGTG . . . T A CAGTAGGTG C . T GG T . A G T . . . . . . . CA GTTGTTTTGT . T . . C . GCCTAT T . CT A . . T
blockSeqs : . . . . . . . . G . . A . . T . . . C . . TTGCTTTTAGCGC . . . . . . . . A GTTATA C CATG . . . ATGTC . . . CA . . . AA T AG T . . . . . . . . . . TGGGGGTGGGGGGT G . . . G GCCTAGAGATAAAGACATAGAAGAC . . . A . ACT . . A GG A . . . . . GTGT . . . A A ACCG . . C G T . T C . . . . . . . . T GATTTTG . T . . C . TTCC T . CT C . .
blockSeqs : . . . . . . . . . . . C . . T . . . C . . GTGCATTGTATGT . . . . . . . . A ATTTTA A TG . . . ATGGT . . . AA . . . A . AT A . . . . . . . . . . TAGGG G . G ATTTTGTACCATTGCAAAAGC . . . A . . . . A TG A . . . . . GTG . . . G C TG . . G T T . A G . . . . . . . . A GTGTT . T . . T . AAC T . TC C . .
blockSeqs : . . . . . . . . . . . A . . A . . . C . . TTGCATTTAGG . . . . . . . . . ATTCTA . G . . . GTGA . . . A . . . T . . T . . . . . . . . . . GTGG . . T ACTAAGGACT . . . T . . . . A T . . . . . . GTG . . . G . T . . G G . . A A . . . . . . . . A AAG . . . TAT A . TC T
blockSeqs : . . . . . . . . A . . . . . . C . . TGTATTTAT . . . . . . . . . . . . . . . . A . . . A . . . . . . . . . . . . GT . . . . . . . . . . . . . A . . .
blockSeqs : . . . . . . ACA . . . . . . . . . .
blockSeqCons : TTGCATTTAG**************** A***** ATTNTA************ CG***** ATGTC******* TA****** T* TAGGGGCGGGGG******************* ACT************* TTGTGT******* CCGTGGTG* G*** T*
originalCons : AGCTTA-AAA--TCAT-TTT-C---CGTTT-CG-TTC-CG--CA-TTTAG-C--A-ATA-CCC--TCTTAT-GA-CGT----CAC-C-T-GA-GACACT--T-G---C-AT--T---TA-G---C-CACT-AT-A---TT-AA----TTT--ATGTG----ACAAA-----TGACCAGA---TTTAT-A------TTGACTCCATGCATG--GACT-G-G------TG-A--T-G-C---CAG-AC--T---TTC-AA--GAGT-G-AAAG-----GACTTTA------ACTT-AATATATAC--G-AGGGAC-T-GGAC-C-A-------GTTTT-TT---AG-TC-AC-ATGG-AA-CTA-GG-GCGG-----GG-GGGG---------GGGGGGGGG----GGG------GAGAG-GGNGGGCGGGGGGGGGGGGG--GGGGGGGGGGGGGTATGTAC----------ATTTA-G---TACCA--TT-GGAC-TAAAAC--CTCGGCTT-GA--C-ATT-A-TTC-ACTGCC--ACT-----------GGCCAGCCC--ACAG-AGAATT-TGTAATA-TTC-TATCAATA--------GATA-ATC--T--------GTG-GTTTTAAAGG-A----ATTATA----TCNAACTAACTTACTGTAAACATAAGGT-------TGGGCG-TAC------CTAAGCGCT--GTTTTT-G-------ATAAACGATGT-C-GT--A-CCGGACC-TAATA-TT--G-ACATAA-A----ATT--GT-G-TTT-----G-CAGTT--TTACC--TCC-GC----CTCTT-CCAAGTANCCTATATTTT--TAATT--TTGCAATG-A-CAATAGACGATCGTGA
finalCons : AGCTTA-AAA--TCAT-TTT-C---CGTTT-CG-TTC-CG--CA-TTTAG-C--A-ATA-CCC--TCTTAT-GA-CGT----CAC-C-T-GA-GACACTTGCATTTAG----------------C-CACT-AT-A---TT-AA----TTT--ATGTG----ACAAA-----TGACCAATTNTA------------TTGACTCCATCG-----GACT-G-G------TGATGTC-------CAG-AC--T---TTC-AA--GAGT-G-AAAG-----GACTTTA------ACTTT-ATATATAC--G-AGGGAC-T-GGAC-C-A-------GTTTT-TT---AG-TC-AC-ATGG-AA-CTAGGGGCGGGGG-------------------GGGGGGGGG----GGG------GAGAG-GGNGGGCGGGGGGGGGGGGG--GGGGGGGGGGGGGTATGTAC----------ATTTA-G---TACCA--TT-GGAC-TAAAAC--CTCGGCTT-GA--C-ATT-A-TTC-ACTGCCACT-------------GGCCAGCCC--ACAG-AGAATT-TGTAATA-TTC-TATCAATA--------GATA-ATC--TTTGTGT-------TTTTAAAGG-A----ATTATA----TCNAACTAACTTACTGTAAACATAAGGTCCGTGGTG-GGCG-TAC------CTAAGCGCTG---TTTT-G-------ATAAACGATGT-C-GT--A-CCGGACC-TAATA-TT--G-ACATAA-A----ATT--GT-G-TTT-----G-CAGTT--TTACC--TCC-GC----CTCTT-CCAAGTANCCTATATTTT--TAATT--TTGCAATG-A-CAATAGACGATCGTGA
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GGGGGGGGGGGGGGGGTGGGGGGGGGGGCTACTATTTACATGGATATTGAAATAAGTAGGGCCCCTTAGTTTCATTTCTACAGTACACATCTTTATCTTTCTTTACAGTACATTTAATGGTTGAAATCTTTTGTGTTTTAGAAATTGTGCCT
Unaligned ( gi|14 ): GCAGGGGCGGATCCAGGAATTCTGGTTAGGGGGGGCGTGGATTTTTTTTTTTCAGAGGCAGGGGGTCTGGGGGCCGCCTTAAGGCCCCTAGT
Unaligned ( gi|16 ): AGGGGCGGATCCAGGAATTCTGGTTAGGTGGGGGGGGGGCATTGATAATTTTTTGTTTCACTGAGGCAGTGGGTCCATGGGCAAGGC
Unaligned ( gi|20 ): CAGGGGCGGATCCAGGAATTCTTGGTAGGGGGGGCGGGATTTTTTTTTCAGAGGCAGGG
Unaligned ( gi|21 ): GGGGCGGAATCCAGAATTCTGGTTGGGGGGGGGGGGGGCGTGGATTTTTTTCAGA
Unaligned ( gi|22 ): AGGGGCGGATCCAGGAATCCTGGTTAGGGAGGGCGTGGATTTTTTTTCAGAGGCA
Unaligned ( gi|23 ): CAGGGCGGATCCAGGAATTCTGGTTAGAGGGGCATGGATTTTTTTCAGAGGCAG
Unaligned ( gi|24 ): TGCAGGGGCGGATCCAGGAATTCTGGTAAAGGGGCGTGATTACTTTTCAAGAGG
Unaligned ( gi|25 ): CAAGGGCGGATTCAGGAGTTGTGGTTAGGGGGGCGTGGATTTTTTTTCAGA
Unaligned ( gi|26 ): TGACAGAGGCGGATCCAGGAATTCTGGTTAGGGGG
Alignments
lowQualScore : 111 11 1111 111 11111111111111111111111111 111 1111 11 1111 222222 11111 111 222222222 55555555555555555555555555 3333333333 111 11111 11111 111111 11111 2222222 111 666666666666666666666666666666 3333333333333333333333333 44444444444444444444444444444444444444444444 4444444444444444 333333333333333 1 1111 1111 66666666666 1 111111 2222222222 1 1 111111 33333333333333333 11 11111 111111 11
lowQualScore : 6 99 6 5 000 5 5 5 99 5 5 8888 5 77 1 5 5 7777 111 5 5 44444444444444444444444444 5 5 5 333 5 0000 55 4444 444444 6 66666 1 111 666666666 55555555555555555555555555 5 1111111111 5 77 000 22222 5 5 66666 3 999999 1 6 99999 888 6 6 1111111 6 111 6 6 6 6 1 000000000000000000000000000000 5555555555555555555555555 44 99 1 0 88888888888888888888888888888888888888888888 5 77 5 666 5 0 1111111111111111 0 77 5 777 1 55 5 55 111111111111111 1 0 2222 4444 1 3 55555555555 3 999999 6 99 2222222222 1 3 1 5 77 1 5 5 66 5 222222 88888888888888888 99 1 11 8 88888 6 111111 1 77 8888 1 8 8 44
lowQualScore : . .. . . ... . . . .. . . .... . .. . . . .... ... . . .......................... . . . ... . .... .. .... ...... . ..... . ... ......... .......................... . .......... . .. ... ..... . . ..... . ...... . . ..... ... . . ....... . ... . . . . . .............................. ......................... .. .. . . ............................................ . .. . ... . . ................ . .. . ... . .. . .. ............... . . .... .... . . ........... . ...... . .. .......... . . . . .. . . . .. . ...... ................. .. . .. . ..... . ...... . .. .... . . . ..
lowQualScore : 7 22 7 7 000 7 7 7 33 7 7 0000 7 99 7 0 0 5555 222 0 0 00000000000000000000000000 0 0 0 888 0 6666 88 2222 000000 7 77777 0 777 777777777 66666666666666666666666666 7 4444444444 7 99 000 99999 7 7 77777 5 222222 7 7 00000 777 7 7 7777777 7 777 7 7 7 7 7 555555555555555555555555555555 0000000000000000000000000 55 22 7 1 11111111111111111111111111111111111111111111 7 99 7 111 7 7 9999999999999999 7 99 7 777 4 99 7 99 000000000000000 9 6 1111 2222 0 2 88888888888 3 222222 3 22 1111111111 7 0 4 7 99 4 0 0 99 7 666666 88888888888888888 22 7 00 0 44444 7 666666 9 99 9999 0 0 0 77
consensus : AGCTTA-AAA--TCAT-TTT-C---CGTTT-CG-TTC-CG--CA-TTTAG-C--A-ATA-CCC--TCTTAT-GA-CGT----CAC-C-T-GA-GACACT--T-G---C-AT--T---TA-G---C-CACT-AT-A---TT-AA----TTT--ATGTG----ACAAA-----TGAC-CAA-----TTNT---ATTGAC---------TCCA---T----GG----------------ACT-GGTG-A--TGTC--CAG-AC--T---TTC-AA--GAGT-G-AAAG-----GACTTTA------ACTTTA-TATATAC--G-AGGGAC-T-GGAC-C-A-------GTTTT-TT---AG-TC-AC-ATGGAA-CTAG-G---GGCGG-----GG-------------GGGGGGGGGG------GGG------GAGAG-GGNGGGCGGGGGGGGGGGGG--GGGGGGGGGGGGGTATGTAC----------ATTTA-G---TACCA--TT-GGAC-TAAAAC--CTCGGCTT-GA--C-ATT-A-TTC-ACTGCC--ACT-----------GGCCAGCCC--ACAG-AGAATT-TGTAATA-TTC-TATCAATAGATA-ATC------TTT------GTGTTTTTAAAGGA----ATTATA----TCNAACTAACTTACTGTAAACATAAGGT-C-G---GGTGGGCG-TAC------CTAAGCGCT--GTTTT--G-------ATAAACGATGT-C-GT--A-CCGGACC-TAATA-TT--G-ACATAA-A----ATT--GT-G-TTT-----G-CAGTT--TTACC--TCC-GC----CTCTT-CCAAGTANCCTATATTTT--TAATT--TTGCAATG-A-CAATAGACGATCGTGA
Reference ( family-526 ) : AGCTTA-AAA--TCAT-TTT-C---CGTTT-CG-TTC-CG--CA-TTTAG-C--A-ATA-CCC--TCTTAT-GA-CGT----CAC-C-T-GA-GACACT--T-G---C-AT--T---TA-G---C-CACT-AT-A---TT-AA----TTT--ATGTG----ACAAA-----TGAC-CAA-----TTNT---ATTGAC---------TCCA---T---CGG----------------ACT-GGTG-A--TGTC--CAG-AC--T---TTC-AA--GAGT-G-AAAG-----GACTTTA------ACTTTA-TATATAC--G-AGGGAC-T-GGAC-C-A-------GTTTT-TT---AG-TC-AC-ATGGAA-CTAG-G---GGCGG-----GG-------------GGGGGGGGGG------GGG------GAGAG-GGNGGGCGGGGGGGGGGGGG--GGGGGGGGGGGGGTATGTAC----------ATTTA-G---TACCA--TT-GGAC-TAAAAC--CTCGGCTT-GA--C-ATT-A-TTC-ACTGCC--ACT-----------GGCCAGCCC--ACAG-AGAATT-TGTAATA-TTC-TATCAATAGATA-ATC------TTT------GTGTTTTTAAAGGA----ATTATA----TCNAACTAACTTACTGTAAACATAAGGT-CCG-T-GGTGGGCG-TAC------CTAAGCGCT--GTTTT--G-------ATAAACGATGT-C-GT--A-CCGGACC-TAATA-TT--G-ACATAA-A----ATT--GT-G-TTT-----G-CAGTT--TTACC--TCC-GC----CTCTT-CCAAGTANCCTATATTTT--TAATT--TTGCAATG-A-CAATAGACGATCGTGA
gi|1 : AGCTTA-AA---TCAT-TTT-C---CGTTT-CG-TTC-CG--CA-TTTAG-C--A-ATATCCC--TCTTAT-GA-CGT----AAC-C-T-GA-GACACT--T-G---C-AT--T---TA-G---C-CACT-AT-A---TT-AA----TTT--ATGTG----ACAA------TCAC-CAAAATGTTTAT---ATTGAC---------TCCA---TGCATGG----------------ACT-GGTG-A--TG-C--CAG-AC--T---TTC-AA--GAGT-G-AAAG-----GACTTTA------ACTAAA-TATATAC--A-AGGGAC-T-GGAC-C-A-------GTTTT-TT---AG-TC-AC-ATGGAA-CTAG-GTACGGGGG-----GG-------------GGGGGGGGGG------GGG------GAGGG-GGGGGGTGGGGGGGGGGGGG--GGGGGGGGGGGGGTATGTAC----------ATTTG-G---TACCA--TTGGGAC-TAAAAC--CTCGGCTT-GG--C-ATT-A-TTC-ACTGCC--ACT-----------GGCCAGCCC--ACAG-AGAATT-TGTAATA-TTC-TATCAATAGATA-ATC--------T------GTGGTTTTAAAGGA----ATTATA----TCTAACTAACTTACTGTAAACATAAGGT-T---------GGCG-TGC------CTAAGTGCT--GTTTTTGG-------ATAAACGGTGT-C-GT--ACCCGGACC-TAATA-CT--G-ACATAA-A----ATT--GT-G-TTT-----G-CAGTT--TTACC--TCC-GC----GTCTT-CCAAGTAACCTATATTTT--TAATT--TTGCAATGAA-CAATAGACGA-CGTGA
gi|11 : GGGGGG--GGGGGGGCGGGGAAA---AC----------ACTAA-G--------------GAC-T--------CCGGCTTTGA--C-ATG-A-TTA-ACTG------------------GGCCAGCCC--ACAG-AGA---------T--TTC-TATCCATAGATA-ATC------TTT------GTGTTTTCAAAGAA----ATTtt
gi|12 : gtcacatggaatAT-GA-CGT----CAT-C-T-GA-GACAC---T-G---T-AT--T---TA-T---C-CACT-AT-A---TC-AACGTTTTT--A---A----AGAAACTATTTG-C-TAG-----TTAT---ATTGAC---------TCCG---T----GGATAATGACTGTGAAATACT-GGTG-A--------CAG-AC--T---T-------GAGT-G-AA
gi|13 : TTA-AAACTTCAT-GTT-CGTATATTT-TGATTCACGACTA-TTTAG-C--A-ATA-ACC--TCT-AT-GA-CGT----CACACAT-GA-GACACT--T-G---C-TT--T---TA-GCGCC-CACT-ATAA---TT-AA----TT
gi|15 : CTTACAAA--TCAT-TT--C---CGTTT-CG-TTC-CGG-CAGTTTAG-C--C-ATA-CC---TCTTATCGA-CGT----CAC-----GA-GACACT--T-G---C-AT--T---TAGG---C-CACT-AT-A---TT-AA----T
gi|17 : CGGGCC-TAACA-TT--G-ATATTA-T----ATT--AA-G-----------CAGTT--TCTCA--TCC-GC----CTCTT-CCAAGTTTCCTGAAATTT--AAGCT--TTGGAATG-A-CAGTAg
gi|18 : --G-------ATAAACGATGT-C-GT--A-CCGGACG-TAATG-TT--
gi|18 : TTTT-ACAAGTAGCCTATATTTC--TAACT--TTAAAATG-A-CAATAGACG-TCGTGttacaagtagcctatatttctaactttaaaatgacaatagacgtcgtgtt
gi|19 : gataaacgatgtcgtaccggacgtaatgAC-AAGAACGTCTCAGCTA-GA--A-ATT-A-TTC-ACTGCC------------------------C--ACAG-AGTATT-GGCAATG-TTC-TATCAAAAGAtt
gi|2 : agaggaaaAGCTTA-AAA--TCAT-TTTTC---CGTTT-CG-TTC-CG--CA-TTTAGGC--A-ATA-CCC--TCTTAT-GA-CGTTT--CAC-C-T-GA-GACACT--TTG---CCATAAT---TA-G---C--ACT-AT-AC--TT-AA----TTT--ATGTG----ACAAA-----TGAC-CAA-----TTTT---ATTGAC---------TCCA---T----GG----------------ACT-GGTG-AT-TGTC--CAG-AC--T---TTT-CA--GAGT-G-AAAG-----GACTTTA------AC-TTA-TATATAA--G--GGGAC-TGGGAC-C-A-------GTTTTGTT---AG-TC-AC-ATGGAA-CTGG-G---GGTGG-----GG-------------GGTGGGCGG
gi|2 : aGGGGGTG--GGGGGTGGGCGGTTATGTACCATATAGCACATTT--G---TACCA--TT-G-AC-TAAAAC---TCG--TT-GA--C-ATTTA-TTCCACTGCC--ACT-----------GGCCAGCCC--ACAG-AGAATT-T-TAATA-TTC-TATCAATAGATA-AATAGATAATCT------GTGTTTCAAAGGAA----ATTATA----TCTAACTAACTTTCTGTAAACATAAGGT-T---------GGCGTTAC------CTAAGTGCTCGGTTTTC-G-------AT-AACGATGTCC-GT--A-CCGGACC-TAATATTT--GCACATAA-A----ATT--GA-T-TTT-----G-CAG-T--TTACC--TCCGGC----CTCTT-CCAAGTAAAC-----------AA----TTGCAATG-ATCAATAGACGttatgtaccatatagcacatttgtaccattgactaaaactcgttgacatttattccactgccactggccagcccacagagaattttaatattctatcaatagataaatagataatctgtgtttcaaaggaaattatatctaactaactttctgtaaacataaggttggcgttacctaagtgctcggttttcgataacgatgtccgtaccggacctaatatttgcacataaaattgattttgcagtttacctccggcctcttccaagtaaacaattgcaatgatcaatagacgtttcgtaat
gi|3 : aagcttaaaatcatttttccgtttcgttccgcatttaggcaataccctcttatgacgtttcacctgagacactttgccataattagcactatacttaatttatgtgacaaatgaccaattttattgactccatggactggtgattgtccagacttttcagagtgaaaggactttaacttatatataaggggactgggaccagttttgttagtcacatggaactCA---T----GG----------------ACT-GGTG-A--TGTC--CAGCAC--T---TTCCAA--GAGT-G-AAAG------ACTT-A------ACTTTA--ATATAT--A-AGGGAC-T-GGAC-C-A-------GTTTT-TT---AG-TCCAC-ATGGAA-CTAG-G---GG--------------------------------------------------------------GGGGGGGGGGGG--GGGGGGGGGGGGGTATGTAC----------ATTTT-G---TACCA--TT-G----CAAAAG--CTCGGCTT-GA--CAATT-AGTTC--CTGCC--ACT-----------GG-CAGCCC--ACAGAAGAATTGTGT-ATACTTCTTAACAATAGATAGATC--------T------GTG-TTTTAAGGAA----ATTATA----TCTAACTAACTTACTGTCAACACAAGGT---------TGGGCGCTAC------CTAAGTGCT--GTTTT--G-------ATAAACGGTCT-C-GT--A-CCGGA-C-TAATA--T--G-ACATAA-A------T--GT-G-TT---------ATTT--TTAtttcgtaat
gi|3 : TATTTT--TAATTCGTTGCAATG-A-CAATAGACAATCGTGAattcgttgcaatgacaatagacaatcgtga
gi|4 : catggactggtgatgtccagcactttccaagagtgaaagacttaactttaatatataagggactggaccagttttttagtccacatggaactagggggggggggggggggggggggggggggtatgtacattttgtaccattgcaaaagctcggcttgacaattagttcctgccactggcagcccacagaagaattgtgtatacttcttaacaatagatagatctgtgttttaaggaaattatatctaactaacttactgtcaacacaaggttgggcgctacctaagtgctgttttgataaacggtctcgtaccggactaatatgacataaatgtgtGGGGGGAGGTATGTAC----------AATTATG---TACTAAATT-G-ACATAAAAC---TCGGCTT-GAGAC-ATA-T-TTC-ACTGCCCAACTAATAGATCGAGGACCAGTCCCTACAA-AGAATT-GGTATTA------ATGAATTGATA---C------TCT------GT-----TAAAGGAGGAAATTGTACACTTCAGACT--TTCACTTTAAAAAACAGATACCG-A-GG-----A-TAC------TTAGGCTCT--TTTTT--GGAATTGAATTAACGATGTTC-GTTAATCCAGATCGTAATA-TTTTG-ACAACA-ACCATATT--GTTG-TTTT----GTCAGTT--T-ACCCTTCC-GC----TTCTTTCCAAGTATTCC---TTTTAATAATC--TTATAAT
gi|5 : TT-C---CGTGTGCG-TTC--G--CA-TTTAG-C--ATGTA-CCCCCTCTTAC-GT-CGCTGTCCCC-C-TCAA-GACAATGTT-GAGCC-TT--T---TA-G---CGCACT-AT-A---TTTAA----TTT--ATGTG----ACGA------TGACTCAA-----T-GT---AT-GACGTGCCTACCTCCACGTT---CGC----------------ACT-GTCG----------CAG-CC--TCTGTTC-A---GAGTTGTAAAG-----GATCTTATTAAAGACTTTAATATATAC--GGAGGGAA-A-GGAC-C-A-------GTTTT-TT---AG-TC-AC-ATGGAATCTAT-G---AGCGA-----GGC------------GGGGGGGTGGCGCGCCGGGCGTGCAGAGAG-CGCGGGCAGCGGGGGCGCGGCCCGGGGGGGTGGGTTATGTAC----------A
gi|6 : GGGGG--AAAAGGGAGGGGATACCAAC----------GCCTA-GAGATA--A-----AGACATAGAAGA-CTCGGCTA-GA--C-ATT-A-TTC-ACT-------------------GGCCAGCCC--TCAG-AGAATT-TGTAATA-TTA-TATCAATAGATT-GTG------TTT------GTG-TTTTAAAAGA----TTTATA----TCGAAATAATTTACTGTTATCATAAAAT-CCGTT-GATGAGCG-TAT------CTAAGGACT--GTTTT--G-------AAAAACGAT-T-CAGT--A-TCAGGCC-TAATA-TT--G-ACCTAG-A----AATAAGT-GATTTTTTCCC-CAATTTCTTATT--TCC-ACTATTTTCTT-CCCAATA---TATAATGG--TAATC--TTc
gi|7 : gttacaaggaacaTA-AAA--TCATATTT-C---CGTTT-CG-TTC-CGG-CA-TTTAG-CCAA-ATA-CCT--CTTTAT-GAACGT----CAC-C-T-GAAGACACG--T-G---C-AT--TGTATG-T---C-CACT-AT-AATATT-AA----TTTT-ATGTG----GCAAA-----TGAC-CAA-----TTCT---ATTG-C---------TCCA---T----GG----------------ACTGGGTGTAGTTGTCCGCAG-ACAAT---TTC-AAGTGAGT-G-CGAGATAGTGACTGTA--------CTTA-TA-ATACCTA-AGGGAC-T-GGAC-C-AACTCTCGGTTTT-TA---AGCTC-ACAATGG----CAGCG---GGCGGATCCAGGAATGTCTAGTTTAGGGGGGGGGG------GGG------
gi|8 : gcAGCT-A-AAA--TCAT-TTT-C---CGTTT-CG-TTC-CG---A-TTTAG-C--A-ATA-CCC--T-TAAT-GA-CGT----CAC-CTT-GA-GA--------A---C-A----------------CACTGAT-A---TT--A----TTTCAATGTGTAAAACAAA-----TGAC-CAG-----ATTTGCGATTGAC---------TCCA---T---TGG-----------------CT-GGTG-A--TGGT--CAG-A---T---TTC-AA--GAGT-G-AAA------GACTTAA------ACTTTA-TATATAA--T-AGAGACTT-GGACGCAA-------GTTTT-TTTAAAG-TC-AC-ATGGAA-C------------G-----TG-------------GGGGGGGGGG------GGG------GAGAACGGAAGGTGGGGGGGGGGGGcgttggatttttttttc
gi|9 : taAGATA-ATC------TTTTAAGTTGTGTTTTAAAAGAA----ATAATA----TCGAACTCATTAACTGTATACATAAAAT-CAG-TAGGTGGGTG-TACACGTATCTAAGGACA--GGTTT--G-------AAAAACGATAC-A-GT--A-CCGGGCC-TAATA-TT--G-ACCTAACA----ATc
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GGGGGGGGGGGGGGGGTGGGGGGGGGGGCTACTATTTACATGGATATTGAAATAAGTAGGGCCCCTTAGTTTCATTTCTACAGTACACATCTTTATCTTTCTTTACAGTACATTTAATGGTTGAAATCTTTTGTGTTTTAGAAATTGTGCCT
Unaligned ( gi|14 ): GCAGGGGCGGATCCAGGAATTCTGGTTAGGGGGGGCGTGGATTTTTTTTTTTCAGAGGCAGGGGGTCTGGGGGCCGCCTTAAGGCCCCTAGT
Unaligned ( gi|16 ): AGGGGCGGATCCAGGAATTCTGGTTAGGTGGGGGGGGGGCATTGATAATTTTTTGTTTCACTGAGGCAGTGGGTCCATGGGCAAGGC
Unaligned ( gi|20 ): CAGGGGCGGATCCAGGAATTCTTGGTAGGGGGGGCGGGATTTTTTTTTCAGAGGCAGGG
Unaligned ( gi|21 ): GGGGCGGAATCCAGAATTCTGGTTGGGGGGGGGGGGGGCGTGGATTTTTTTCAGA
Unaligned ( gi|22 ): AGGGGCGGATCCAGGAATCCTGGTTAGGGAGGGCGTGGATTTTTTTTCAGAGGCA
Unaligned ( gi|23 ): CAGGGCGGATCCAGGAATTCTGGTTAGAGGGGCATGGATTTTTTTCAGAGGCAG
Unaligned ( gi|24 ): TGCAGGGGCGGATCCAGGAATTCTGGTAAAGGGGCGTGATTACTTTTCAAGAGG
Unaligned ( gi|25 ): CAAGGGCGGATTCAGGAGTTGTGGTTAGGGGGGCGTGGATTTTTTTTCAGA
Unaligned ( gi|26 ): TGACAGAGGCGGATCCAGGAATTCTGGTTAGGGGG