lowQualScore : 44 11 55 2 1 1 4
lowQualScore : .. .. .. . . . .
lowQualScore : 88 88 99 4 2 2 3
consensus : NNNNAAAAAAT--AT--CTCTCT-ATGTACTGGC-CTCAA-TGGGCTTCCGTA
Reference ( gi|2 ) : NNTAAAAAAAT--AT--CTCTCC-ATGTACTGGC-CTCAA-TAGGCTTCCGTA
gi|4 : AAAAAACCCAT--CTCTCT-TTGTACTGG--CTCAA-TA-GCTTCCGTA
gi|3 : AAAAAT--ATAACTCTCT-ATAAACTGGC-CTCAT-TGGGCTTCCGTA
gi|1 : AAAAA---AT--CTCTCC-AAGTACTGGC-CTCAA-TACTCTTCAGTA
gi|13 : attactgcgttAAAAAT--GT--TTCT---ATAAACTGGA-CTCCA-TAGGCTTCCGTA
gi|11 : AAAAT--AT--CTCTCC-ATGTACTGGC-CTCAA-TAGGCTTCCGTAc
gi|14 : AAAAT--AT--CTCTCT-TTGTACTGGC-CTCAA-TGGGCTTCCGT
gi|9 : AAAAT--AT--CTTTCT-ATAAACTGGC-CTCAA-TTGGCTTCCGTA
gi|17 : AAAAT--AT--CTTTCT-AAAAACTGGC-CTCAA-TGGGCTTCCGT
gi|10 : AAAA---AC--CTTTCT-ATGTACTGGC-CTCAA-TGGGTTTTCGTA
gi|25 : AAAAT--AT--ATCT---ACGTACTGGC-CTGAA-TGGGCTTCCGTAa
gi|23 : AAAA---AT--CTCTCT-ATGTACTAGC-CTGAA-TGGGCTTCCAT
gi|28 : AAAA---AT--CTCTCC-AT-TACTG-C-CTCAA-TGGGCTTCCGCA
gi|12 : AAAAT--AT--ATCACA-ATGTACTGGC-CACAA-CGGGCTTCTGTAg
gi|19 : AAAAT--AT--AGTTCA-ATAAACTGGC-CTCAA-TGGGCTTCCGT
gi|18 : AAAATG-AT--TTCT---ATAAACTGGC-CTCAA-TTGGCTTCCGTA
gi|8 : AAAA---AG--CTCTAT-AAGTACTCGC-CTCAA-TGAGCTTCCGTA
gi|7 : AAAATTTAT--CTCTCT-TTGCACTGGCACTCAACTGGGCTTCCga
gi|26 : AAAAT--AT--CTTTTTTATAAAC--GC--TCAA-TGGGCTTCCGTA
gi|16 : AAAT--AT--CTCTCT-ATGTACTGGC-CTCAA-TGGGCTTCTGTA
gi|22 : AAAT--AT--ATCTCT-ATGTACTGGC-CTCAA-TAGGCTTCCGT
gi|6 : AAAT--AT--CTCTCC-ATGTACTGGC-CTCAC-TGGGCTTCTGTA
gi|24 : acAAAT--AT--CTTTGT-ATGTACTGGC-CTCAA-TGGGCTTCCGT
gi|15 : AAAT--AT--TTCCCT-AGGTACTGGC-CTCAA-TGGGCTTCCGTA
gi|31 : AAAT--AT--CTCT----TGCACTGGC-CTCAA-TGGGCTTCCGTA
gi|20 : AAAT--AT--CTTTCT-ATAAACTGGC-CTCAA-TGGGCTTCCGT
gi|21 : AAAC--AT--CTTTCT-GTAAACTGGC-CTCAA-TGGGCTTCCGT
gi|27 : AAAT--AT--CTTTCT-ATA-ACTGGC-CT-AA-CGGGTTTCCTTA
gi|29 : AAT--AA--CTTTCT-ATAAACTGAC-CTCAA-TGGGCTTCCGTa
gi|30 : AT--AT--CTCTCC-ATGTACTGGC-CTCAA-TGGGCTTCCATA
gi|5 : AT--AT--TTTTCC-ATGTACTGTC-CTCAA-TGGGCTT
gi|33 : aaacaaatgtT--AT--CTTTCT-ATAAACTGGC-CTCAA-TGGGCTTC
gi|32 : TCTCT-TTGTACTGGC-CTCAA-TGGGCTTCCGTA
Alignments
lowQualScore : 33 11 1 2 1 1
lowQualScore : .. .. . . . .
lowQualScore : 55 88 2 1 2 2
consensus : NNNNAAAAAAT--AT--CTCTCT-ATGTACTGGC-CTCAA-TGGGCTTCCGTA
Reference ( family-515 ) : NNNNAAAAAAT--AT--CTCTCT-ATGTACTGGC-CTCAA-TGGGCTTCCGTA
gi|1 : AAAAA---AT--CTCTCC-AAGTACTGGC-CTCAA-TACTCTTCAGTA
gi|10 : attactgcgttAAAA---AC--CTTTCT-ATGTACTGGC-CTCAA-TGGGTTTTCGTA
gi|11 : AAAAT--AT--CTCTCC-ATGTACTGGC-CTCAA-TAGGCTTCCGTAa
gi|12 : AAAAT--AT--ATCACA-ATGTACTGGC-CACAA-CGGGCTTCTGTA
gi|13 : AAAAAT--GT--TTCT---ATAAACTGGA-CTCCA-TAGGCTTCCGTA
gi|14 : AAAAT--AT--CTCTCT-TTGTACTGGC-CTCAA-TGGGCTTCCGTc
gi|15 : AAAT--AT--TTCCCT-AGGTACTGGC-CTCAA-TGGGCTTCCGTA
gi|16 : AAAT--AT--CTCTCT-ATGTACTGGC-CTCAA-TGGGCTTCTGTA
gi|17 : AAAAT--AT--CTTTCT-AAAAACTGGC-CTCAA-TGGGCTTCCGT
gi|18 : TTTCT-ATAAACTGGC-CTCAA-TTGGCTTCCGTA
gi|19 : aaaatgaAAAAT--AT--AGTTCA-ATAAACTGGC-CTCAA-TGGGCTTCCGT
gi|2 : AAAAAAT--AT--CTCTCC-ATGTACTGGC-CTCAA-TAGGCTTCCGTA
gi|20 : nntaAAAT--AT--CTTTCT-ATAAACTGGC-CTCAA-TGGGCTTCCGT
gi|21 : AAAC--AT--CTTTCT-GTAAACTGGC-CTCAA-TGGGCTTCCGT
gi|22 : AAAT--AT--ATCTCT-ATGTACTGGC-CTCAA-TAGGCTTCCGT
gi|23 : AAAA---AT--CTCTCT-ATGTACTAGC-CTGAA-TGGGCTTCCAT
gi|24 : AAAT--AT--CTTTGT-ATGTACTGGC-CTCAA-TGGGCTTCCGT
gi|25 : AAAAT--AT--ATCT---ACGTACTGGC-CTGAA-TGGGCTTCCGTA
gi|26 : AAAAT--AT--CTTTTTTATAAAC--GC--TCAA-TGGGCTTCCGTA
gi|27 : AAAT--AT--CTTTCT-ATA-ACTGGC-CT-AA-CGGGTTTCCTTA
gi|28 : AAAA---AT--CTCTCC-AT-TACTG-C-CTCAA-TGGGCTTCCGCAa
gi|29 : AAT--AA--CTTTCT-ATAAACTGAC-CTCAA-TGGGCTTCCGTg
gi|3 : AAAAAT--ATAACTCTCT-ATAAACTGGC-CTCAT-TGGGCTTCCGTA
gi|30 : AT--AT--CTCTCC-ATGTACTGGC-CTCAA-TGGGCTTCCATA
gi|31 : AAAT--AT--CTCT----TGCACTGGC-CTCAA-TGGGCTTCCGTA
gi|32 : TCTCT-TTGTACTGGC-CTCAA-TGGGCTTCCGTA
gi|33 : T--AT--CTTTCT-ATAAACTGGC-CTCAA-TGGGCTTCc
gi|4 : AAAAAACCCAT--CTCTCT-TTGTACTGG--CTCAA-T-AGCTTCCGTA
gi|5 : AT--AT--TTTTCC-ATGTACTGTC-CTCAA-TGGGCTT
gi|6 : aaacaaatgtAAAT--AT--CTCTCC-ATGTACTGGC-CTCAC-TGGGCTTCTGTA
gi|7 : acAAAATTTAT--CTCTCT-TTGCACTGGCACTCAACTGGGCTTCC
gi|8 : AAAA---AG--CTCTAT-AAGTACTCGC-CTCAA-TGAGCTTCCGTA
gi|9 : AAAAT--AT--CTTTCT-ATAAACTGGC-CTCAA-TTGGCTTCCGTAga
Alignments
lowQualScore : 33 11 1 2 1 1
lowQualScore : .. .. . . . .
lowQualScore : 55 88 2 1 2 2
consensus : NNNNAAAAAAT--AT--CTCTCT-ATGTACTGGC-CTCAA-TGGGCTTCCGTA
Reference ( family-515 ) : NNNNAAAAAAT--AT--CTCTCT-ATGTACTGGC-CTCAA-TGGGCTTCCGTA
gi|1 : AAAAA---AT--CTCTCC-AAGTACTGGC-CTCAA-TACTCTTCAGTA
gi|10 : attactgcgttAAAA---AC--CTTTCT-ATGTACTGGC-CTCAA-TGGGTTTTCGTA
gi|11 : AAAAT--AT--CTCTCC-ATGTACTGGC-CTCAA-TAGGCTTCCGTAa
gi|12 : AAAAT--AT--ATCACA-ATGTACTGGC-CACAA-CGGGCTTCTGTA
gi|13 : AAAAAT--GT--TTCT---ATAAACTGGA-CTCCA-TAGGCTTCCGTA
gi|14 : AAAAT--AT--CTCTCT-TTGTACTGGC-CTCAA-TGGGCTTCCGTc
gi|15 : AAAT--AT--TTCCCT-AGGTACTGGC-CTCAA-TGGGCTTCCGTA
gi|16 : AAAT--AT--CTCTCT-ATGTACTGGC-CTCAA-TGGGCTTCTGTA
gi|17 : AAAAT--AT--CTTTCT-AAAAACTGGC-CTCAA-TGGGCTTCCGT
gi|18 : TTTCT-ATAAACTGGC-CTCAA-TTGGCTTCCGTA
gi|19 : aaaatgaAAAAT--AT--AGTTCA-ATAAACTGGC-CTCAA-TGGGCTTCCGT
gi|2 : AAAAAAT--AT--CTCTCC-ATGTACTGGC-CTCAA-TAGGCTTCCGTA
gi|20 : nntaAAAT--AT--CTTTCT-ATAAACTGGC-CTCAA-TGGGCTTCCGT
gi|21 : AAAC--AT--CTTTCT-GTAAACTGGC-CTCAA-TGGGCTTCCGT
gi|22 : AAAT--AT--ATCTCT-ATGTACTGGC-CTCAA-TAGGCTTCCGT
gi|23 : AAAA---AT--CTCTCT-ATGTACTAGC-CTGAA-TGGGCTTCCAT
gi|24 : AAAT--AT--CTTTGT-ATGTACTGGC-CTCAA-TGGGCTTCCGT
gi|25 : AAAAT--AT--ATCT---ACGTACTGGC-CTGAA-TGGGCTTCCGTA
gi|26 : AAAAT--AT--CTTTTTTATAAAC--GC--TCAA-TGGGCTTCCGTA
gi|27 : AAAT--AT--CTTTCT-ATA-ACTGGC-CT-AA-CGGGTTTCCTTA
gi|28 : AAAA---AT--CTCTCC-AT-TACTG-C-CTCAA-TGGGCTTCCGCAa
gi|29 : AAT--AA--CTTTCT-ATAAACTGAC-CTCAA-TGGGCTTCCGTg
gi|3 : AAAAAT--ATAACTCTCT-ATAAACTGGC-CTCAT-TGGGCTTCCGTA
gi|30 : AT--AT--CTCTCC-ATGTACTGGC-CTCAA-TGGGCTTCCATA
gi|31 : AAAT--AT--CTCT----TGCACTGGC-CTCAA-TGGGCTTCCGTA
gi|32 : TCTCT-TTGTACTGGC-CTCAA-TGGGCTTCCGTA
gi|33 : T--AT--CTTTCT-ATAAACTGGC-CTCAA-TGGGCTTCc
gi|4 : AAAAAACCCAT--CTCTCT-TTGTACTGG--CTCAA-T-AGCTTCCGTA
gi|5 : AT--AT--TTTTCC-ATGTACTGTC-CTCAA-TGGGCTT
gi|6 : aaacaaatgtAAAT--AT--CTCTCC-ATGTACTGGC-CTCAC-TGGGCTTCTGTA
gi|7 : acAAAATTTAT--CTCTCT-TTGCACTGGCACTCAACTGGGCTTCC
gi|8 : AAAA---AG--CTCTAT-AAGTACTCGC-CTCAA-TGAGCTTCCGTA
gi|9 : AAAAT--AT--CTTTCT-ATAAACTGGC-CTCAA-TTGGCTTCCGTAga
blockSeqs : CC AA T T A C
blockSeqs : TT . . T . .
blockSeqs : . . . T . .
blockSeqs : . . . A . .
blockSeqs : . . . T . .
blockSeqs : . . . T . .
blockSeqs : . . . T . .
blockSeqs : . . . A . .
blockSeqs : . . . A . .
blockSeqs : . . . A . .
blockSeqs : . . . T . .
blockSeqs : . . . A . .
blockSeqs : . . . A . .
blockSeqs : . . . T . .
blockSeqs : . . . T . .
blockSeqs : . . . T . .
blockSeqs : . . . T . .
blockSeqs : . . . A . .
blockSeqs : . . . T . .
blockSeqs : . . . A . .
blockSeqs : . . . A . .
blockSeqs : . . . T . .
blockSeqs : . . . C . .
blockSeqs : . . . T . .
blockSeqs : . . . A . .
blockSeqs : . . . T . .
blockSeqs : . . . T . .
blockSeqs : . . . T . .
blockSeqs : . . . C . .
blockSeqs : . . . T . .
blockSeqs : . A . .
blockSeqs : . . . .
blockSeqCons :
originalCons : NNNNAAAAAAT--AT--CTCTCT-ATGTACTGGC-CTCAA-TGGGCTTCCGTA
finalCons : NNNNAAAAAAT--AT--CTCTCT-ATGTACTGGC-CTCAA-TGGGCTTCCGTA
Alignments
lowQualScore : 33 11 1 2 1 1
lowQualScore : .. .. . . . .
lowQualScore : 55 88 2 1 2 2
consensus : NNNNAAAAAAT--AT--CTCTCT-ATGTACTGGC-CTCAA-TGGGCTTCCGTA
Reference ( family-515 ) : NNNNAAAAAAT--AT--CTCTCT-ATGTACTGGC-CTCAA-TGGGCTTCCGTA
gi|1 : AAAAA---AT--CTCTCC-AAGTACTGGC-CTCAA-TACTCTTCAGTA
gi|10 : attactgcgttAAAA---AC--CTTTCT-ATGTACTGGC-CTCAA-TGGGTTTTCGTA
gi|11 : AAAAT--AT--CTCTCC-ATGTACTGGC-CTCAA-TAGGCTTCCGTAa
gi|12 : AAAAT--AT--ATCACA-ATGTACTGGC-CACAA-CGGGCTTCTGTA
gi|13 : AAAAAT--GT--TTCT---ATAAACTGGA-CTCCA-TAGGCTTCCGTA
gi|14 : AAAAT--AT--CTCTCT-TTGTACTGGC-CTCAA-TGGGCTTCCGTc
gi|15 : AAAT--AT--TTCCCT-AGGTACTGGC-CTCAA-TGGGCTTCCGTA
gi|16 : AAAT--AT--CTCTCT-ATGTACTGGC-CTCAA-TGGGCTTCTGTA
gi|17 : AAAAT--AT--CTTTCT-AAAAACTGGC-CTCAA-TGGGCTTCCGT
gi|18 : TTTCT-ATAAACTGGC-CTCAA-TTGGCTTCCGTA
gi|19 : aaaatgaAAAAT--AT--AGTTCA-ATAAACTGGC-CTCAA-TGGGCTTCCGT
gi|2 : AAAAAAT--AT--CTCTCC-ATGTACTGGC-CTCAA-TAGGCTTCCGTA
gi|20 : nntaAAAT--AT--CTTTCT-ATAAACTGGC-CTCAA-TGGGCTTCCGT
gi|21 : AAAC--AT--CTTTCT-GTAAACTGGC-CTCAA-TGGGCTTCCGT
gi|22 : AAAT--AT--ATCTCT-ATGTACTGGC-CTCAA-TAGGCTTCCGT
gi|23 : AAAA---AT--CTCTCT-ATGTACTAGC-CTGAA-TGGGCTTCCAT
gi|24 : AAAT--AT--CTTTGT-ATGTACTGGC-CTCAA-TGGGCTTCCGT
gi|25 : AAAAT--AT--ATCT---ACGTACTGGC-CTGAA-TGGGCTTCCGTA
gi|26 : AAAAT--AT--CTTTTTTATAAAC--GC--TCAA-TGGGCTTCCGTA
gi|27 : AAAT--AT--CTTTCT-ATA-ACTGGC-CT-AA-CGGGTTTCCTTA
gi|28 : AAAA---AT--CTCTCC-AT-TACTG-C-CTCAA-TGGGCTTCCGCAa
gi|29 : AAT--AA--CTTTCT-ATAAACTGAC-CTCAA-TGGGCTTCCGTg
gi|3 : AAAAAT--ATAACTCTCT-ATAAACTGGC-CTCAT-TGGGCTTCCGTA
gi|30 : AT--AT--CTCTCC-ATGTACTGGC-CTCAA-TGGGCTTCCATA
gi|31 : AAAT--AT--CTCT----TGCACTGGC-CTCAA-TGGGCTTCCGTA
gi|32 : TCTCT-TTGTACTGGC-CTCAA-TGGGCTTCCGTA
gi|33 : T--AT--CTTTCT-ATAAACTGGC-CTCAA-TGGGCTTCc
gi|4 : AAAAAACCCAT--CTCTCT-TTGTACTGG--CTCAA-T-AGCTTCCGTA
gi|5 : AT--AT--TTTTCC-ATGTACTGTC-CTCAA-TGGGCTT
gi|6 : aaacaaatgtAAAT--AT--CTCTCC-ATGTACTGGC-CTCAC-TGGGCTTCTGTA
gi|7 : acAAAATTTAT--CTCTCT-TTGCACTGGCACTCAACTGGGCTTCC
gi|8 : AAAA---AG--CTCTAT-AAGTACTCGC-CTCAA-TGAGCTTCCGTA
gi|9 : AAAAT--AT--CTTTCT-ATAAACTGGC-CTCAA-TTGGCTTCCGTAga