lowQualScore : 11 11
lowQualScore : 2 2 4444 2 2 4444 2 3 8 99 22 6
lowQualScore : . . .... . . .... . . . .. .. .
lowQualScore : 1 1 5555 1 1 5555 2 2 0 00 00 0
consensus : CCTTATAGGCTCCA-CAGAG-TGAC----A-CCTT-T----TT-ATACTGGGCG-ACGT-TGCCAGCCAGTAT
Reference ( gi|6 ) : CCTTATAGGCTCCA-CAGAG-TGAC----A-CCTT-T----TT-ATACTGGGCG-ACG--TGTTAGTCAGTAT
gi|16 : CCTTATAGGCTCCA-CAGAG-TGAC----A-CCTT-T----TT-ATA
gi|7 : cCCTGATAGACCCAA-CAGAT-TGGC----A-CTTT-T----TT-ATACTAGGCG-ACG--TGCCAGCCA
gi|9 : CCTTATAGGCTCCA-CAGAG-TGAC----A-CCTT-T----TT-A
gi|12 : ctgtgccCCTTATAGGCTCCA-CAGAG-TGAC----A-CATT-T----TT-ATAa
gi|11 : ccCCCTATAGGCTCCA-CAGAG-TGAC----A-CCTTAT----TT-ATAC
gi|13 : cCCTTATATGCTCCA-CAGAG-TGAC----A-CCTT-T----TT-A
gi|10 : ccCCTTGTAGACTCTA-CAGAG-TGAC----A-CCTT-T----TT-ATAaa
gi|20 : ttgccCCTTATAGGGTCCA-CAAAG-TGAC----A-CCTT-T----TT-A
gi|19 : ccCCTTATAGGCTTCA-CAAAG-TGAC----A-CCTT-T----TT-
gi|21 : ccCCTTATTGGCTCCA-CAGAG-TGAC----A-CCTT-T----Tt
gi|17 : ccCCTTATAGGCACTA-CGGAG-TGAC----A-CCTT-T----TT-AT
gi|1 : ccCCTGATAGAATCAA-CAG-G-TG-C----A-CCTT-T----T--ATACTGGGCGAACGT-TGCCAGCCAGT
gi|14 : ttgatgtccgtaggacaatccgagggcaccttactgatctgttggagtctgtgccCCTGATAGACCCAA-CAGAG-TGGC----A-CCTT-T----TT-ATA
gi|2 : ccCCTGATAG-CACCA-AAGAG-TGGC----A-CCTT-T----TT-ATAC
gi|15 : tgatgttcccgtagcgacaatccgaggggattttactgattgttggcctgtgccCCTAATAGACCGAA-CAGAG-TGGC----A-CCTT-T----TT-ATA
gi|5 : ccCTGATAGACCCAA-CAGAGATGGC----AACCTT-TATTCTT-ATACTGGGCG-ATGTCTGCCAGCCAG
gi|4 : TTATCGGATGCA-CAGAG-TGAC----A-CCTT-T----TTCATACT--------G--TGCCAGCCAGTAT
gi|18 : ctgtttgaacctgttcccaTATAGGCTCCA-CAGAG-TGACTCGTA-CCTT-T----TT-ATA
gi|8 : CCATCAGAA-TGGC----A-CCTT-T----TT-ATACTGGGCG-ACG--TGCCAGCCAG
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|3 ): ACAATCCCGAGGGAAGCCCTACTTCTTTTGGAGCCCCGTGCCCTAATAGACTCAACAGAAGTGGCACCC
Alignments
lowQualScore : 22
lowQualScore : 2 2 4444 2 2 4444 2 6 66
lowQualScore : . . .... . . .... . . ..
lowQualScore : 0 0 2222 0 0 2222 1 7 22
consensus : CCTTATAGGCTCCA-CAGAG-TGAC----A-CCTT-T----TT-ATACTGGGCG-ACG--TGCCAGCCAGTAT
Reference ( family-514 ) : CCTTATAGGCTCCA-CAGAG-TGAC----A-CCTT-T----TT-ATACTGGGCG-ACGT-TGCCAGCCAGTAT
gi|1 : CCTGATAGAATCAA-CAG-G-TG-C----A-CCTT-T----T--ATACTGGGCGAACGT-TGCCAGCCAGT
gi|10 : ttgatgtccgtaggacaatccgagggcaccttactgatctgttggagtctgtgccCCTTGTAGACTCTA-CAGAG-TGAC----A-CCTT-T----TT-ATA
gi|11 : ttgccCCCTATAGGCTCCA-CAGAG-TGAC----A-CCTTAT----TT-ATAC
gi|12 : cCCTTATAGGCTCCA-CAGAG-TGAC----A-CATT-T----TT-ATA
gi|13 : ccCCTTATATGCTCCA-CAGAG-TGAC----A-CCTT-T----TT-A
gi|14 : ccCCTGATAGACCCAA-CAGAG-TGGC----A-CCTT-T----TT-ATAaa
gi|15 : ccCCTAATAGACCGAA-CAGAG-TGGC----A-CCTT-T----TT-ATA
gi|16 : ccCCTTATAGGCTCCA-CAGAG-TGAC----A-CCTT-T----TT-ATA
gi|17 : cCCTTATAGGCACTA-CGGAG-TGAC----A-CCTT-T----TT-AT
gi|18 : ccTATAGGCTCCA-CAGAG-TGACTCGTA-CCTT-T----TT-ATA
gi|19 : CCTTATAGGCTTCA-CAAAG-TGAC----A-CCTT-T----TT-
gi|2 : ccCCTGATAG-CACCA-AAGAG-TGGC----A-CCTT-T----TT-ATACt
gi|20 : tgatgttcccgtagcgacaatccgaggggattttactgattgttggcctgtgccCCTTATAGGGTCCA-CAAAG-TGAC----A-CCTT-T----TT-A
gi|21 : ccCCTTATTGGCTCCA-CAGAG-TGAC----A-CCTT-T----T
gi|4 : ccTTATCGGATGCA-CAGAG-TGAC----A-CCTT-T----TTCATACTG----------TGCCAGCCAGTAT
gi|5 : ctgtttgaacctgttcccaCTGATAGACCCAA-CAGAGATGGC----AACCTT-TATTCTT-ATACTGGGCG-ATGTCTGCCAGCCAG
gi|6 : CCTTATAGGCTCCA-CAGAG-TGAC----A-CCTT-T----TT-ATACTGGGCG-ACG--TGTTAGTCAGTAT
gi|7 : CCTGATAGACCCAA-CAGAT-TGGC----A-CTTT-T----TT-ATACTAGGCG-ACG--TGCCAGCCA
gi|8 : CCATCAGAA-TGGC----A-CCTT-T----TT-ATACTGGGCG-ACG--TGCCAGCCAG
gi|9 : agacCCTTATAGGCTCCA-CAGAG-TGAC----A-CCTT-T----TT-A
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): ACAATCCCGAGGGAAGCCCTACTTCTTTTGGAGCCCCGTGCCCTAATAGACTCAACAGAAGTGGCACCC
Alignments
lowQualScore : 11
lowQualScore : 2 2 4444 2 2 4444 2 1 6 55
lowQualScore : . . .... . . .... . . . ..
lowQualScore : 0 0 2222 0 0 2222 1 0 7 88
consensus : CCTTATAGGCTCCA-CAGAG-TGAC----A-CCTT-T----TT-ATACTGGGCG-ACG--TGCCAGCCAGTAT
Reference ( family-514 ) : CCTTATAGGCTCCA-CAGAG-TGAC----A-CCTT-T----TT-ATACTGGGCG-ACG--TGCCAGCCAGTAT
gi|1 : CCTGATAGAATCAA-CAG-G-TG-C----A-CCTT-T----T--ATACTGGGCGAACGT-TGCCAGCCAGT
gi|10 : ttgatgtccgtaggacaatccgagggcaccttactgatctgttggagtctgtgccCCTTGTAGACTCTA-CAGAG-TGAC----A-CCTT-T----TT-ATA
gi|11 : ttgccCCCTATAGGCTCCA-CAGAG-TGAC----A-CCTTAT----TT-ATAC
gi|12 : cCCTTATAGGCTCCA-CAGAG-TGAC----A-CATT-T----TT-ATA
gi|13 : ccCCTTATATGCTCCA-CAGAG-TGAC----A-CCTT-T----TT-A
gi|14 : ccCCTGATAGACCCAA-CAGAG-TGGC----A-CCTT-T----TT-ATAaa
gi|15 : ccCCTAATAGACCGAA-CAGAG-TGGC----A-CCTT-T----TT-ATA
gi|16 : ccCCTTATAGGCTCCA-CAGAG-TGAC----A-CCTT-T----TT-ATA
gi|17 : cCCTTATAGGCACTA-CGGAG-TGAC----A-CCTT-T----TT-AT
gi|18 : ccTATAGGCTCCA-CAGAG-TGACTCGTA-CCTT-T----TT-ATA
gi|19 : CCTTATAGGCTTCA-CAAAG-TGAC----A-CCTT-T----TT-
gi|2 : ccCCTGATAG-CACCA-AAGAG-TGGC----A-CCTT-T----TT-ATACt
gi|20 : tgatgttcccgtagcgacaatccgaggggattttactgattgttggcctgtgccCCTTATAGGGTCCA-CAAAG-TGAC----A-CCTT-T----TT-A
gi|21 : ccCCTTATTGGCTCCA-CAGAG-TGAC----A-CCTT-T----T
gi|4 : ccTTATCGGATGCA-CAGAG-TGAC----A-CCTT-T----TTCATACT--------G--TGCCAGCCAGTAT
gi|5 : ctgtttgaacctgttcccaCTGATAGACCCAA-CAGAGATGGC----AACCTT-TATTCTT-ATACTGGGCG-ATGTCTGCCAGCCAG
gi|6 : CCTTATAGGCTCCA-CAGAG-TGAC----A-CCTT-T----TT-ATACTGGGCG-ACG--TGTTAGTCAGTAT
gi|7 : CCTGATAGACCCAA-CAGAT-TGGC----A-CTTT-T----TT-ATACTAGGCG-ACG--TGCCAGCCA
gi|8 : CCATCAGAA-TGGC----A-CCTT-T----TT-ATACTGGGCG-ACG--TGCCAGCCAG
gi|9 : agacCCTTATAGGCTCCA-CAGAG-TGAC----A-CCTT-T----TT-A
blockSeqs : T A TCGT A A ATTC C G . TC
blockSeqs : . . . . . . . G . .
blockSeqs : . . . . . . . A . .
blockSeqs : . . . . . . . G . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : **
originalCons : CCTTATAGGCTCCA-CAGAG-TGAC----A-CCTT-T----TT-ATACTGGGCG-ACG--TGCCAGCCAGTAT
finalCons : CCTTATAGGCTCCA-CAGAG-TGAC----A-CCTT-T----TT-ATACTGGGCG-ACG--TGCCAGCCAGTAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): ACAATCCCGAGGGAAGCCCTACTTCTTTTGGAGCCCCGTGCCCTAATAGACTCAACAGAAGTGGCACCC
Alignments
lowQualScore : 11
lowQualScore : 2 2 4444 2 2 4444 2 1 6 55
lowQualScore : . . .... . . .... . . . ..
lowQualScore : 0 0 2222 0 0 2222 1 0 7 88
consensus : CCTTATAGGCTCCA-CAGAG-TGAC----A-CCTT-T----TT-ATACTGGGCG-ACG--TGCCAGCCAGTAT
Reference ( family-514 ) : CCTTATAGGCTCCA-CAGAG-TGAC----A-CCTT-T----TT-ATACTGGGCG-ACG--TGCCAGCCAGTAT
gi|1 : CCTGATAGAATCAA-CAG-G-TG-C----A-CCTT-T----T--ATACTGGGCGAACGT-TGCCAGCCAGT
gi|10 : ttgatgtccgtaggacaatccgagggcaccttactgatctgttggagtctgtgccCCTTGTAGACTCTA-CAGAG-TGAC----A-CCTT-T----TT-ATA
gi|11 : ttgccCCCTATAGGCTCCA-CAGAG-TGAC----A-CCTTAT----TT-ATAC
gi|12 : cCCTTATAGGCTCCA-CAGAG-TGAC----A-CATT-T----TT-ATA
gi|13 : ccCCTTATATGCTCCA-CAGAG-TGAC----A-CCTT-T----TT-A
gi|14 : ccCCTGATAGACCCAA-CAGAG-TGGC----A-CCTT-T----TT-ATAaa
gi|15 : ccCCTAATAGACCGAA-CAGAG-TGGC----A-CCTT-T----TT-ATA
gi|16 : ccCCTTATAGGCTCCA-CAGAG-TGAC----A-CCTT-T----TT-ATA
gi|17 : cCCTTATAGGCACTA-CGGAG-TGAC----A-CCTT-T----TT-AT
gi|18 : ccTATAGGCTCCA-CAGAG-TGACTCGTA-CCTT-T----TT-ATA
gi|19 : CCTTATAGGCTTCA-CAAAG-TGAC----A-CCTT-T----TT-
gi|2 : ccCCTGATAG-CACCA-AAGAG-TGGC----A-CCTT-T----TT-ATACt
gi|20 : tgatgttcccgtagcgacaatccgaggggattttactgattgttggcctgtgccCCTTATAGGGTCCA-CAAAG-TGAC----A-CCTT-T----TT-A
gi|21 : ccCCTTATTGGCTCCA-CAGAG-TGAC----A-CCTT-T----T
gi|4 : ccTTATCGGATGCA-CAGAG-TGAC----A-CCTT-T----TTCATACT--------G--TGCCAGCCAGTAT
gi|5 : ctgtttgaacctgttcccaCTGATAGACCCAA-CAGAGATGGC----AACCTT-TATTCTT-ATACTGGGCG-ATGTCTGCCAGCCAG
gi|6 : CCTTATAGGCTCCA-CAGAG-TGAC----A-CCTT-T----TT-ATACTGGGCG-ACG--TGTTAGTCAGTAT
gi|7 : CCTGATAGACCCAA-CAGAT-TGGC----A-CTTT-T----TT-ATACTAGGCG-ACG--TGCCAGCCA
gi|8 : CCATCAGAA-TGGC----A-CCTT-T----TT-ATACTGGGCG-ACG--TGCCAGCCAG
gi|9 : agacCCTTATAGGCTCCA-CAGAG-TGAC----A-CCTT-T----TT-A
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): ACAATCCCGAGGGAAGCCCTACTTCTTTTGGAGCCCCGTGCCCTAATAGACTCAACAGAAGTGGCACCC