lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111
lowQualScore : 2 66666666 1 22 44 88888888888888888888888888888888888888888888888 111 333333333333 5555555555555555555555 2222222 3333333333 11 2222 1 11 1 1 222222222 11 2 11 11 6666666666666 111 11111111111 777777777777777777777777777777777777777777777777777777777777777777777777777777 2 1 1 11 1 2 2222222 1 555555555555555555 444 1 1 4 4 4 1 2 333333333333333333333 11 666666666 111 333333 111 11 1 2222 1 33333333 333333 111 1 111 888888888888888888888888888 2 2 2 2 2222222222222222222222222222222222222222222222222222 22 111 1 1 1 11 22222 11 2 2 333 222 2 444444 11 33333333 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 7777777 4444444444444444444444444 1 11
lowQualScore : 3 4 7 3 3 3 55 777 99999 44444444 3 88 3 0 00 4 4 4 55 44 55 8888 55 55 4 4 77777777777777777777777777777777777777777777777 000 99 6 444444444444 3 0 8 1111111111111111111111 1 88 0 1111111 8 0 5 8 5555555555 88 33 7777 2 0 33 0 3 0 000000000 11 2 0 8 8 0 99 11 6 0000000000000 111 6 5 6 99999999999 222222222222222222222222222222222222222222222222222222222222222222222222222222 8 99 8 4 1 8 8 8 0 0 33 0 0 5555555 3 0 666666666666666666 7 1 0 666 3 3 0 0 0 0 0 2 999999999999999999999 77 4 444444444 666 888888 0 555 88 3 7777 3 6 33333333 2 9 444444 666 0 7 222 66 222222222222222222222222222 3 0 0 2 0 0 1111111111111111111111111111111111111111111111111111 77 888 7 3 6 3 88 7 44444 44 3 3 0 555 111 0 333333 88 77777777 7 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0000000 4 6 1111111111111111111111111 6 5 6 22 6
lowQualScore : . . . . . . .. ... ..... ........ . .. . . .. . . . .. .. .. .... .. .. . . ............................................... ... .. . ............ . . . ...................... . .. . ....... . . . . .......... .. .. .... . . .. . . . ......... .. . . . . . .. .. . ............. ... . . . ........... .............................................................................. . .. . . . . . . . . .. . . ....... . . .................. . . . ... . . . . . . . . ..................... .. . ......... ... ...... . ... .. . .... . . ........ . . ...... ... . . ... .. ........................... . . . . . . .................................................... .. ... . . . . .. . ..... .. . . . ... ... . ...... .. ........ . ............................................................................................................................. ....... . . ......................... . . . .. .
lowQualScore : 6 1 3 6 6 6 00 111 11111 22222222 6 66 6 9 99 0 0 0 55 00 55 5555 55 55 0 0 00000000000000000000000000000000000000000000000 000 22 7 000000000000 2 8 0 2222222222222222222222 4 88 8 6666666 0 8 0 0 0000000000 88 88 8888 2 0 88 0 2 0 222222222 22 2 8 0 0 4 00 00 7 7777777777777 777 7 2 7 22222222222 000000000000000000000000000000000000000000000000000000000000000000000000000000 0 88 0 0 4 0 0 0 0 0 88 0 0 8888888 2 0 444444444444444444 3 0 7 777 3 3 0 0 0 0 0 5 555555555555555555555 00 0 000000000 777 333333 7 333 33 3 0000 3 7 55555555 5 8 555555 000 0 0 333 55 555555555555555555555555555 0 0 0 5 0 0 5555555555555555555555555555555555555555555555555555 55 333 3 3 0 3 33 0 77777 33 7 0 0 000 000 0 000000 00 22222222 3 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5555555 0 0 0000000000000000000000000 0 0 0 00 0
consensus : ATCATAAAGAAA-ATTG-CTCTGT-G-GA-AA-T--TGT--AAACAT-----CATTCGG-NCT--CT-CGTT--G-ATT-AAAAA-TAG-CG-CT-AA--GGAT--G----TTTG--ACCT--C-TT-CGCCGT---------A----------C-A-A--ATT----C------------AA---CATCTGTTAGA--A-AC---------A--ACGTAGA-GT-GCAA----A-ACA------C-TCGTGA-TCATGTA-TT--G-TAGTGAC-CAGGGAAAGTAAA-CAAAT----------AATT-AGT--ATGG-C-AAGAGAGATGCAA-TT--CGA-TTAG-CAAA-T--AA---GG-AAAGGAATCTTGGAGGGTGAACGC-T-AGTATC--CGTAT--AAATA-AGAGGCGGC--A---T----ATCAT---AAC-CNTC-AGT---GGT-AA--ACTGGAGGTTATGAA--TGA-TTGT--CT--CC--CTCTN---ATTGAT----ACAGGTA--G--TT-TAAG-CGTATCCAA--T-A-CCGCGTATTTT-AGAGTTAAA-TTTATTTG-ATT-C-AGAGGG-TT-CAGTTAA--TATTT-TATTTTTAC----AGAATTTTCAG-TTAATATN---TTATTTTC---ATTTTATGTAAGAATATTTATGTTGTAAAGAA-TGTTTG-TATTTAATTTTAATATTCATTGTTAAATCAATGTTATATTATTTCCATGTTTATATTATAATAAAG-AGTGGTCAACTGGAGG-T-AT---GA-TTGT---C--TCCTTCC-AANT---TT--A-CAGGA-C-GGGAA------TAAGAATAGGA-CCAC--TCCC-CGTA--C-CTG-TGGGGCATTCA---ACAGAATCCAGTAAAA-T----CGNA-TTCGACTTCCAGTA-AAGGAAATATTTCTCTCNNANTGATAGTGTGCGAGATNTCNATTNGCGTNCTTGACGTTNTTCTTTTTATCAGCCCCTAAAACAAAATCGTTCATCGCAAAACNACCTTTTTNATGCCACNCNANAACCCCCTGAAGTCATATTAGG-GCTGATAATAAG-AA-TTGTC-AGCA--CGATGAG-TAT-CCACACTTTCG-TGGATTTTCGGGACAATANCGCCCAGACATAGATCAAGTGGTGGATCCCCGGGGNCCTAACACGAGGN-TAGG--ATATCGTAACACCTCTCACAAGCCAAGGG--AGCG---------------------C-AGA-------------TATT---------TCCCCGTCATC-G-AATAAACAATCAAAGN-ACA--A---TNTATATTTTGTTACNNNANGTAGTGCTGAGAATTCGGTGGNGCTTTCGTNTCAAATGATG----ATTAATCACCAGTA------ACTTTGGCTTTTCTCATTT
Reference ( gi|2 ) : ATCATAAAGAAA-ATTGGCTCTGT-G-GA-AA-T--TGT--AAACAT-----CATTC---TCG--CT-CGTT--G-ATT-AAAA--TAG-CG-TT-AA--G--T--G----TTTG--ACCT--C-TT-CGCCGT---------A----------C-A-G--ATT----C------------AA---CATCTGTTAGA--A-AC---------A--ACGTAGA-GT-GCAA----A-ACA------C-TCGTGA-TCATGTA-TT--G-TAGTGAC-CAGGGAAAGTAAA-CAAAT----------AATT-AGT--ATG--C-AAAAGAGATGCAA-TT--CGA-TTAG-CAAA-T--AA---GG-AAAGGAATCTTGGAGGGTGAACGC-T-AGTATC--TGTAT--AAATA-AGAGGTGGT--A---T----ATCAT---AAT-CGTC-AGT---GGT-AA--ACTGGAGGTTATAAA--TGA-TTGT--CT--CC--TTCTTA--ATTGAT----ACAGGTG-AGTCTT-TAAG-CGTATCCAA--T-A-TCGCGTATTTT-AAATTTAAA-TT-ATTTG-ATT-C-AGAGGG-TT-CAGTTAA--TATTT-TA-TTTGAT----AGAATTTTCAG-TTAATATG---TTATTTTCAGAATTTTATGTAAAAACATTTATGTTGTA---AA-TGTTTG-TATTTAATTTTAATATTCATTGTT-AATCAATGTT-TATTATTTCCATGTTTATA-TATAATAAAG-AGTGGT-AACTGGAGG-T-AT---GA-TTGT---C--TCCTTCTTAATTGGATT--A-CAGGA-C-GGGAA------TAAGAACAGGA-CCAC--TCCC-CGTA--C-CTG-TGGGGCACTCA---ACAGAATCCAGTAAAA-T----CGGA-TTCGACTTCCAGTA-AAGGAAATAGTCCTCTTTCA-TA--A--GTG---GATTTTCATTTGCGTTC-TGAC-TTGTTC-TTTTATCAG-CCCTAAAAC-AAATC-TTCATC---AAACTATC---GTAATG-AACACAAAA--C----GAAGTC--ATTAGG-GCTGATAATAAG-AATTTGTC-AGCA--CTATGAG-TAT-CCACAATTTCGTTGGATTTTCGAGACAATAACA-CCA---ATAGATCAAGTGGTGGAT-CC----GGCCTAACACGAGGC-TAGG--ATATCGTAACACCTCTCACAAGCCAAGGG--AGTG---------------------C-AG--------------TATT---------TCCCCGTCATCAA-AATAAACAATTGAAGT-ACA--A---TAT------------GAAACGTGGTGCTGAGAATTCGG-GG----TTCGTTTCAAATAATGATCTATTAATTCCAAGTACACTACGCTCTGTCCTTCTTTATTT
gi|4 : ATCATAAAGAAA-AATGCCTCTGT-G-GA-AAAT--TGT--AAACATGCAGGCATTCGGACTG--CTACGTTATG-ATT-AAAAATTAGGCG-TT-AA--G--C--GATGATTTG--ACCT--C-TT-CGA-GT---------A----------C-A-AGAATT----C------------CA---C-TCTGTTAGA--ATGT---------A--ACGTAGA-GTTGCAA----A-ACA------CGTCGTGAATCATGTAGTT--GGTAGTGAC-CAGGGAAAGTAAAACAAAT----------CATT-AGCTGATGGCC-AAGAGAGAGGTAA-TTGTTGA-TTAGGCAAAAT--AA---GG-AAAGGAATCTTGGGAGGTGAACTC-T-AGTATC--TGTAT--AAATACAGAGGTGGA--AT--T----ATCAT---AAT-CGCC-AGT---GGT-TA--ACTGATGGTTATGA--------TGTCACT--CC--TTCTAA--AGTGATA---ACAGGTATGGTCCTATAAGCCGTATCTAA--TAA-TCGCATAGTTT-AAATTTAAA-TT-ATTTGAATT-CGAGAGGGTTT-CAGTAGA--TACTT-TA-TTTTATAAGAAAAATTTTCAGTTTAACATAATTTTATTTTC
gi|3 : attatATCATAAAGAAA-ATTG-CTCTGT-A-GA-AA-T--TG------CAT-----CATTCAG-TT---CT-CGTT--G-ATC-AAAAA-TAG-CG-CT-AA--GGAT--G----TTTG--ACCC--CCTT-CGCCGT---------AAAATACTCCAC-A-AT-ATT----CCAAGACATCAGTAATGCCATCTGTTAGG--A-ACGTCAAAGTTA--ACTTAGA-GT-TCAG----ATACATATGTAC-TCATGA-TCATGTG-CT--T-TAGTGAC-CAGGAAAAGTAAA-CAAATAAATTGAAATAATT-AGT--ATG--T-AAGAAAAATGCAT-TT--CGA-TTAT-CAAA-T--AA---GG-TAAGGAATCTTGGAGGGTGAACGC-T-AGT-TC--CGTAT--AAATA-AGAGACGGCAAA---TTCAAATTAT---AAC-CCTC-ATT---ATT-AA--ATTGAAGGTTA-------GA-TTGT--CTG-CC--CAATT---ATTGAA----ACAGG--------------------------T-A-CCGCGTATTTT-AGTGTTAAATTT-AATTG-ATT-C-AGAGGG-TT-CAGTTAA--TATTT-TATTTTTAC----AGAATTTTT---------TG---TTATT------ATTTTATGTAAGAATATTTATGTTGTAAAGAA-TGTTTG-
gi|9 : atatcatttaacgaaaatcttgaggacaaaattgttttgttaataggggaaatttATCATAAAGAAA-ATTG-CTCTGT-G-GA-AA-T--TGT--AAACAT-----CATTCG--GCT--CT-CGTT--G-ATTAAAAA--AAG-CG-CT-AA--GGAT--G----TTTG--ACCT--C-TT-CGTCGTAACTCCAAGA----------C-A-A--AGTAA--T------------AA---CATCTGCTAGA--A-AC---------A--ATGTAAACGT--CAAGGTTA-ACT------C-TCATGA-TAATGTA-TT--G-TAGTGAC-CAGGGG----AAA-TAAAT----------AATT-AGgttttttnnnnntgaacgctagttccgtataaat
gi|10 : tATCATAAAGAAA-ATTG-CTCTGT-G-GA-AA-T--TGT--AAACAT-----CATTCG--GCT--CT-CGTT--G-ATTAAAAA--TAG-CG-TT-AA--GGAT--G----TTTG--ACCT--C-TT-CACCGT---------A----------CAA-G--ATTC---C------------AA---CATCTGTTAGA--A-
gi|14 : gctgatatcatttagtttggcgtcttctgtttgataagaagatggcattgatgtcagaggtttATCATAAAGAAA-ATTG-CTCTGT-A-GA-AG-T--TGT--AATTAT-----CATTCAG-TT---CT-CGTT--G-GTTAAAAA--TAG-CG-CA-AATGA--T--G----GTTG--ACCT--C-TT-CGCCGT---------A----------ca
gi|11 : atcataacgataatcttgaggacaagatttggggaatttATCAATAAGAAA-ATTGTCTCTGT-A-GA-AA-T---------GCAT-----CATTG---CAGTTCT-CGTT--G-ATC-AAAAA-TAG-CG-CT-AA--GGAT--G----TTTG--ACCTCCC-TT-CGCCGT---------A----------A-A-T--ACT----C------------CA---CAag
gi|12 : tcatttaacgaaaatcttgagacataaattgtttttgttattaggggaaattttATCATAAAGAAA-CT--GCTCTTTTG-GA-TA-T--TG---AAACAT-----CATTCAG-TT---CT-CGTT--A-GTT-AAAA--TAG-CG-TT-AT--GGAT--G----TTTG--ATCT--C-TT-CGTCGatattccaagacatcaagtaatg
gi|1 : aatcataacaataatcatgaggacaagattttttgttaagtaaggggggggggggtttTCATAAAGAAA-AATTGCTCTCT-G-GA-AA-T--TGT--AAACAT-----CATTC---GCT--CT-CGTTT-G-ATT-AAAAA-TAG-C--CT-AA--GGATAAG----TTTG--ACCT--C-TT-CGCCGC---------AACTCAAGA--C-A-A--AGTAAAAT------------AA---CATCTGTTAGA--A-AC---------ACTGCGTAGA-GT-----------------------------TCA------------AGTGAC-CGGGGAAA-TAAA-CAAAT----------AAT--AGT--ATGG-C-AAGAAAGATGCAA-TT--CGAATTAG-CAAA-TTTAC---GGTAAAGGAATCTTGGAGG-TGAACGC-TTAGT-TCA-TGTATTAAAATG-AGGGCTCAC--T---C----ATCCTCTCACTACTTCTAGTTCTGGTGAA--ACTGGACGTAGTGAA--T-A-TTG---CT--CC--T-CTCG--AATGGTTAAAACAGGTT-TACGTT-TAAT-C----CCAAACT-AATCGCGTATTTTTAAACTTAAA-TTTATTTG-ATTTC-AGAGGG-TTTCAGTTAAGCTATTCATA-TTTTAT----AGAATTTTCAG-TTAATATC---TTATTTTCAGGATTT-ATGTAAAAACATTTATGTTGTA---AATTGTTTGATATTTAATTTTAATATTCATTGTTAAATCAATGTTATATTATTTCCATGTTTATATTATAATAAAGAAGTGGT-AA-TGGAAG-T-TTTTGAA-TTCTATGC--TCCTCTCTAACT--CTTAAA-CAGGAGCAGGGAAATCAAGTAAGCATGGCAGCCACCTTCCCTCGTA--CACTGTTGGGGCA-TCACCCACA-ATTCCAGAACAA-TGCGACGCATTTCGACTTCCAGTATAAAGGAATATTTCTCTTACAGTGATA--GTGCGAAATGTCCATTTG-GTTC-TGATGTTGTTC-TTTTATCAGCCCCTAAAACAAAATCGTTCATTGCAAAACTATT---TTAATGCCACCCCACA--CCCCTG-AGTCATATTAGG-G-TGAT-ATAAG-AA-TTGTC-AGCA--CGATGAG-TATCCCACAA-TTCG-TGGAGTTTCGGGACAATAACACCCA---ATAGATCAAGTGGTGGAT-CCCGGGGACCTAACACGAGGTGTAGGATATATCGTAAC-CCTCTCACAAGCCAAGGG--AGTG---------------------CGAGATTTTAAAAGAAGCTATT---------TCCCCGTCATC-A-AATAAACAATTAATGC-ACC--ACCTTCT------------TCAAT---GTGCTGAAAATTCGGTAGAGCTTTCGTATCAAATGATG----ATTAATCACCAGTA------ACTTTGGCTTTTCTCATTT
gi|5 : attattattcataacgataatctgagggacaagattttttgttagtaggggggggggaattatCATAA-GAAA-ATTGTTCCTTTTG-GAGAA-T--TGT--AAA-AT-----CATTCGG-CCT--CT-CGTT--GCGTT-AAAAACTAG-CG-TTTAA--GGAT--G----TTTGCGACCT--C-TTTCGCCGT---------A----------C-AAG--ATT----C------------AA---CATCTGTTACACAA-AC---------A--A-GT-GA-GT-GCAA----A-ACA------C-TCGTGA--CATGTA-TTCTG-TATGGACGCAGGGAAAGTAAA-CAAAT----------AATTTAGT--TGG--CTAAAAGAGATGCAAGTT--CGA-T-AG-CAAA-T--AATCAAG-GAAGGAATCTTGGAGAGTG-ACGCTT-AGTATCTTTGTAT--AATAA-AGAGGTGG---A---T-----TCAT---AAT-CGTC-AGT---GGT--A--ACTGGAGGTTATGA
gi|18 : AAAGAAA--TTG-CTCTCT-GCGA-AA-TCTTGTCAAAACAT-----CATTCGT-CCT--CT-CGTT--G-ATT-AAAA--tt
gi|17 : AAGAAATATTG-CTCTGT-G-GA-AA-T--TGT--AAACAC-----CATCG---GCT--CT-CGTG--G-ATT-AAAA---AA-CGCCT-AA--GGAT--G----TTTG--AC----C-TT-CGCCGA---------A----------C-
gi|7 : TTTTTNNNNNTGAACGC-T-AGT-TC--CGTAT--AAATA-AGAGACGGC--AAATTCAA-ATTAT---AAC-CCTC-ATT---ATT-AA--ATTGAAGGTTA-------GA-TTGT--CTGTCCAATT------ATTGAA----ACAGGT---------------------------A-CCGCGTATTTT-AGTGTTAAA-TTTAATTG-ATT-C-AGATGG-TT-CAGTTAA--TATTT-TATTTTTAC----AGAATTTTCAG-TTAAT-----------------ATTTTATGTAAGAATATTTATGTTGTAAAGAA-TGTTTG-tccaagacaaagtaaa
gi|4 : tgttgtaaagaatgtttggtA-AGGAGTG----A---C----ATCAT---AAC-CATC-AGT-----T-AACCACTGGCGATTAT-GA--TAA-T--T--CC--AC--CTCTGT--ATTTAT----ACAGATgtt
gi|16 : attatatcataaagaaaaatgcctctgtggaaaattgtaaacatgcaggcattcggactgctacgttatgattaaaaattaggcgttaagcgatgatttgacctcttcgagtacaagaattccactctgttagaatgtaacgtagagttgcaaaacacgtcgtgaatcatgtagttggtagtgaccagggaaagtaaaacaaatcattagctgatggccaagagagaggtaattgttgattaggcaaaataaggaaaggaatcttgggaggtgaactctagtGAAATTGCAAAGTTGAATTTT--CT--GC--CTCCCATTATTTA-----ACAGGTA-AGATTA-TAAG-TGTATCCAC--T-C-GCGCGTATTTC-AGAGTTAAA-TTCATTTG-ATT-C-AGAGctaaagtgataacaggtatggtcctataagccgtatctaataatcgcatagtttaaatttaaattatttgaattcgagagggtttcagtagatactttattttataagaaaaattttcagtttaacataattttattttc
gi|13 : G-AGTGGTCAACTGGAAG-T--T---GAATTGT---C--TTCCTCC-AATTAT-TT--ATCAGGG-C-GGAAA------TAAGAATAGGA-TCAC--TCCC-CGTA--T-CTC-TAAGGCATTT----GCAGAATGCAGTAAAA------CGTA-CTCGACTTCCAGTA-AAAGAA
gi|4 : -AGTGGTTAACTGATGG-TTAT---GA-T-GT---CACTCCTTCTAAAGT-GATA--A-CAGGtaa
gi|5 : attatatcataaagaaaaatgcctctgtggaaaattgtaaacatgcaggcattcggactgctacgttatgattaaaaattaggcgttaagcgatgatttgacctcttcgagtacaagaattccactctgttagaatgtaacgtagagttgcaaaacacgtcgtgaatcatgtagttggtagtgaccagggaaagtaaaacaaatcattagctgatggccaagagagaggtaattgttgattaggcaaaataaggaaaggaatcttgggaggtgaactctagtatctgtataaatacagaggtggaattatcataatcgcc-AGTGGT-AACTGGAGGTT-AT---GA-TTtatggtcctataagccgtatctaataatcgcatagtttaaatttaaattatttgaattcgagagggtttcagtagatactttattttataagaaaaattttcagtttaacataattttattttc
gi|6 : cataagaaaattgttccttttggagaattgtaaaatcattcggcctctcgttgcgttaaaaactagcgtttaaggatgtttgcgacctctttcgccgtacaagattcaacatctgttacacaaacaagtgagtgcaaaacactcgtgacatgtattctgtatggacgcagggaaagtaaacaaataatttagttggctaaaagagatgcaagttcgatagcaaataatcaaggaaggaatcttggagagtgacgcttagtatctttgtataataaagaggtggattcataatcgtcGA-C-GGGGA------TAAGAACAGGA-C-AC--TCCC-CGTAAAC-CTG-TGGG-CATTTA----CAGA--CCAGTAAAAAT----CG-A-TTCGACTTCCAGTA-AAGGAAATAAACCGAGCTAATTA--AGTGTG---GATTTCAA--AGCGTGCTTGAC-TTTTTCTTTTTATCAG-CCCTAAAAC-AA----TT--TC---AAACAACCTTTTTTATG--ACACAAAAACT----GAAGTC--ATTAGGTTCTGATAATAAGAAATTTGCC-AGTA--CGATGAGTTTT-CCAAACTTTCG-TGGATTTTC
gi|19 : CAGTCA---ACAGAATCCAGTAAAA-T----CGGA-TTCGTCTTCCAGTA-ATGG-AATATTTCTCTataacgc
gi|6 : TTAGG-GCTGATAAAAAG-AAAAAGTCAAGCACGCTTTGAA--AT-CCACACTTat
gi|8 : gacggggataagaacaggacactccccgtaaacctgtgggcatttacagaccagtaaaaatcgattcgacttccagtaaaggaaataaaccgagctaattTTGGTTGGATATTGGAGACAATACCG-CTAGACATAAA---AGTGGTGGATCCC----GTCCTAATAC--GGA-T-----ATATCGTAACACCTCTCAAATACCA--GC--AATT---------------------A-AGA-------------TATTAACGGAACATTC---TCATAAACAACAAACAA-CAAAATAACATCA---TATATATTTTGTTACGATAAGTAGTGCTGAGAATTCGG-GGT---TTCGTTTCAAAaacaatttcaaacaaccttttttatgacacaaaaactgaagtcattaggttctgataataagaaatttgccagtacgatgagttttccaaactttcgtggattttcataacgc
gi|15 : aa-TAGG--ATATCGTAACACCTCTCACAAGCCAAGCGAAAGCGAGATAAAAAAAAAAACAACAAC-AC--------------TATT---------TCCCCGTGATTCG-AATAAACAATCCAAGA-ACA--G---Tc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|20 ): TAAACAATCCAAGAACAGTCCACGTTTTTTTGTTACGAT
Alignments
lowQualScore : 11111111111111111111111111111111111 11111111111111111111111111111111111
lowQualScore : 11 666666666666666666666666666666666666666666666 222222222222 2222222222222222222222 1111 3333333333 111 111 11 111111 1 11 66666666666666666 111 11 222222 1111111111111 2222 11111111111111111111111111111111111 11 11 111 1111 2222222222 1 1 1 1 1 2 33333 1 222 1 11 5555555555 1 1 222222 1 11 1 1111 1 11 222222 55555555555555 2 2 2 2 2 22 333333 222 33 1 55555 33 111 33 1 1 11 1 333 44444 11 11 11 11 44444444444444444444444444444444444 1 22 11 666666666666666666666 444444 4444 555555
lowQualScore : 555 6 3 44 3 3 3 3 44 555 88888 3 88 3 3 77 3 3 55 3 3 55 3 55 55 3 3 333333333333333333333333333333333333333333333 888 77 5 666666666666 1 6 8888888888888888888888 6 3333 6 6 2 6 5555555555 111 999 8 11 88 8 8 666666 8 0 5 5 9 33 77 6 55555555555555555 1 111 00 888888 99 9999999999999 1 2222 11111111111111111111111111111111111 6 2 7 6 6 6 8 8 11 8 0 33 6 444 0 8 9999 3 1111111111 6666 0 5 5 5 3 3 6 0 00000 3 333 3 44 1 6666666666 0 0 888888 0 2 33 0 7777 0 2 11 99 6 555555 8 8 8 3 3 222 55555555555555 1 1 7 1 6 1 3 3 1 3 3 3 11 888888 1 555 1 00 1 4 1 00000 7 00 888 7 11 3 3 44 0 66 1 2 6 777 7 6 11111 1 7 44 2 33 3 3 33 2 88 77777777777777777777777777777777777 2 0 00 55 1 33 1 444444444444444444444 999999 1 2222 3 2 777777 2
lowQualScore : ... . . .. . . . . .. ... ..... . .. . . .. . . .. . . .. . .. .. . . ............................................. ... .. . ............ . . ...................... . .... . . . . .......... ... ... . .. .. . . ...... . . . . . .. .. . ................. . ... .. ...... .. ............. . .... ................................... . . . . . . . . .. . . .. . ... . . .... . .......... .... . . . . . . . . ..... . ... . .. . .......... . . ...... . . .. . .... . . .. .. . ...... . . . . . ... .............. . . . . . . . . . . . . .. ...... . ... . .. . . . ..... . .. ... . .. . . .. . .. . . . ... . . ..... . . .. . .. . . .. . .. ................................... . . .. .. . .. . ..................... ...... . .... . . ...... .
lowQualScore : 888 7 3 66 3 3 3 3 66 888 33333 3 66 3 3 99 3 6 00 6 6 00 6 00 00 6 6 888888888888888888888888888888888888888888888 888 99 7 888888888888 0 7 5555555555555555555555 7 3333 7 7 5 7 8888888888 888 222 0 00 88 0 0 000000 0 3 7 7 0 66 99 7 33333333333333333 0 777 22 111111 22 7777777777777 0 3333 00000000000000000000000000000000000 7 5 3 7 7 7 0 0 00 0 8 66 4 000 8 0 6666 8 9999999999 0000 0 5 5 5 3 3 7 7 33333 3 333 3 00 0 3333333333 0 0 888888 0 5 88 0 8888 0 5 00 44 0 888888 8 0 0 8 5 777 77777777777777 0 0 3 0 7 0 7 3 0 7 3 7 77 777777 0 777 0 00 0 0 0 77777 3 77 333 3 77 3 3 00 0 88 0 5 7 000 3 7 77777 0 3 33 5 88 2 2 88 0 88 22222222222222222222222222222222222 5 0 55 00 0 88 0 444444444444444444444 333333 0 5555 0 5 555555 5
consensus : ATCATAAAGAAA-A-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-CGGTCT-CT-CGTT--G-ATTAAAAA-T--AGCGCT-AAG-GAT--G-TTTG--ACCT--C-TT-CGCCGT---------A----------CAAG-ATT----C------------AA---CATCTGTT--AGAA-AC---------A--ACGTAGA-GT-GCAA----A-ACA------C-TCGTGA-TCATGTA-T--TG-TAGTGAC-CAGGGAAAGTAAA-CAAATAA----------TTAGT--ATGGC-AAGAGAGATGCAA-TT--CGA-TTAG-CAAA-T--A---AGG-AAAGGAATCTTGGAGGGTGAACGC-T-AGTATC--CGTAT--AAATA-AGAGGCGGC--A-------T----ATCATAACCGTCAGT---GGT-AAACTGGAGGTTATGAATGATTGT--CT-CC-CTC---T-NATTGAN---ACAGGT--A--G--TT---TAAG-CGTATCCAA--T-A-TCGCGTATTTT-AGANTTAAATTTATTTG-ATT-C-AGAGGG-TT-CAGTTAA--TATTT-TATTTT-TACAG---AATTTTCAG-TTAAT---ATNTTATTTTC---AT--TTTATGTAAGAACATTTATGTTGTAAAGAATGTTTG-TATTTAATTTTAATATTCATTGTTAAATCAATGTTATATTATTTCCATGTTTATATTATAATAAAG-AGTGGT-AACTGGAAGT-T---GA-TTGT---CTCCT-TC-TAATTG--TT---A-CAGGA-C-GGGAA------TAAGAACAGGA-CCAC--TCCC-CGTA--C-CTG-TGGGGCAT--TCAACAGAATCCAGTAAAA-T----CGNA-TTCGACTTCCAGTA-AAGGAAATANTCCTCTTTCATTGA-AGTGTG---GATTTCCATTTGCGTTC-TGAC-TTGTTC-TTTTATCAG-CCCTAAAAC-AAATC-TTCATC---AAACTACC-TTTTAATG--ACAC-AAAA----CTGAAGTC--ATTAGG-GCTGATAATAAGAA--TTGTCAGCACGATGAG-TAT-CCACAATTTCG-TGGATTTTCGAGACAATAACGCCCA---ATAGATCAAGTGGTGGATCCC----GNCCTAACACGAGG-NTAGG--ATATCGTAACACCTCTCACAAGCCAAGGG--AGTGC-AGAT---AAAAGAAGC--------TATT---------TCCCCGTNA-TC-GAATAAACAATCGAAGNACA--ATNTACATT-TTGTT-CGATA-GTGGTGCTGAGAATTCGG-GG---TTTCGTTTCAAATGATGATCTATTAATCNCNAGTACACTACGCTCTGNCCTTCCTCATTT
Reference ( family-511 ) : ATCATAAAGAAA-A-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-CGGNCT-CT-CGTT--G-ATTAAAAA-T--AGCGCT-AAG-GAT--G-TTTG--ACCT--C-TT-CGCCGT---------A----------CAA--ATT----C------------AA---CATCTGTT--AGAA-AC---------A--ACGTAGA-GT-GCAA----A-ACA------C-TCGTGA-TCATGTA-T--TG-TAGTGAC-CAGGGAAAGTAAA-CAAATAA----------TTAGT--ATGGC-AAGAGAGATGCAA-TT--CGA-TTAG-CAAA-T--A---AGG-AAAGGAATCTTGGAGGGTGAACGC-T-AGTATC--CGTAT--AAATA-AGAGGCGGC--A-------T----ATCATAACCNTCAGT---GGT-AAACTGGAGGTTATGAATGATTGT--CT-CC-CTC---T-NATTGAT---ACAGGT--A--G--TT---TAAG-CGTATCCAA--T-A-CCGCGTATTTT-AGAGTTAAATTTATTTG-ATT-C-AGAGGG-TT-CAGTTAA--TATTT-TATTTT-TACAG---AATTTTCAG-TTAAT---ATNTTATTTTC---AT--TTTATGTAAGAATATTTATGTTGTAAAGAATGTTTG-TATTTAATTTTAATATTCATTGTTAAATCAATGTTATATTATTTCCATGTTTATATTATAATAAAG-AGTGGTCAACTGGAGGTAT---GA-TTGT---CTCCT-TC-CAANT---TT---A-CAGGA-C-GGGAA------TAAGAATAGGA-CCAC--TCCC-CGTA--C-CTG-TGGGGCAT--TCAACAGAATCCAGTAAAA-T----CGNA-TTCGACTTCCAGTA-AAGGAAATATTTCTCTCNNANTGATAGTGTGCGAGATNTCNATTNGCGTNCTTGACGTTNTTCTTTTTATCAGCCCCTAAAACAAAATCGTTCATCGCAAAACNACCTTTTTNATGCCACNCNANAACCCCCTGAAGTCATATTAGG-GCTGATAATAAGAA--TTGTCAGCACGATGAG-TAT-CCACACTTTCG-TGGATTTTCGGGACAATANCGCCCAGACATAGATCAAGTGGTGGATCCCCGGGGNCCTAACACGAGG-NTAGG--ATATCGTAACACCTCTCACAAGCCAAGGG--AGCGC-AGA---------------------TATT---------TCCCCGTCA-TC-GAATAAACAATCAAAGNACA--ATNTATATT-TTGTTACNNNANGTAGTGCTGAGAATTCGGTGGNGCTTTCGTNTCAAATGATG----ATTAATCACCAGTA------ACTTTGGCTTTTCTCATTT
gi|1 : TCATAAAGAAA-AATTG-C-TC--TCT-G-GA-AA-T--TGT--AAACAT-----CATT-CG--CT-CT-CGTTT-G-ATTAAAAA-T--AGC-CT-AAG-GATAAG-TTTG--ACCT--C-TT-CGCCGC---------AACTCAAGA--CAA--AGTAAAAT------------AA---CATCTGTT--AGAA-AC---------ACTGCGTAGA-GT-----------------------------TCA------------AGTGAC-CGGGGAAA-TAAA-CAAATAA----------T-AGT--ATGGC-AAGAAAGATGCAA-TT--CGAATTAG-CAAA-TTTA---CGGTAAAGGAATCTTGGAGG-TGAACGC-TTAGT-TCA-TGTATTAAAATG-AG-GGCT-C--ACTCATCCT----CTCACTACTTCTAGTTCTGGTGAAACTGGACGTAGTGAAT-ATTG---CT-CCTCTCGAAT-GGTTAAA---ACAGGTTTAC-G--TT---TAAT-C----CCAAACT-AATCGCGTATTTTTAAACTTAAATTTATTTG-ATTTC-AGAGGG-TTTCAGTTAAGCTATTCATATTTT--ATAG---AATTTTCAG-TTAAT---ATCTTATTTTC---AGGATTTATGTAAAAACATTTATGTTGTAAAT--TGTTTGATATTTAATTTTAATATTCATTGTTAAATCAATGTTATATTATTTCCATGTTTATATTATAATAAAGAAGTGGT-AA-TGGAAGTTTTTGAA-TTCTATGCTCCTCTC-TAACT---CTTAAA-CAGGAGCAGGGAAATCAAGTAAGCATGGCAGCCACCTTCCCTCGTA--CACTGTTGGGGCATCACCCACA-ATTCCAGAACAA-TGCGACGCATTTCGACTTCCAGTATAAAGGAATATTTCTCTTACAGTGATA--GTGCGAAATGTCCATTTG-GTTC-TGATGTTGTTC-TTTTATCAGCCCCTAAAACAAAATCGTTCATTGCAAAACTA---TTTTAATGCCACCCCACA--CCCCTG-AGTCATATTAGG-G-TGAT-ATAAGAA--TTGTCAGCACGATGAG-TATCCCACAA-TTCG-TGGAGTTTCGGGACAATAACACCCA---ATAGATCAAGTGGTGGAT-CCCGGGGACCTAACACGAGGTGTAGGATATATCGTAAC-CCTCTCACAAGCCAAGGG--AGTGCGAGATTTTAAAAGAAGC--------TATT---------TCCCCGTCA-TC-AAATAAACAATTAATGCACC--ACCT---TC-TT----CAAT-----GTGCTGAAAATTCGGTAGAGCTTTCGTATCAAATGATG----ATTAATCACCAGTA------ACTTTGGCTTTTCTCATTT
gi|10 : attattattcataacgataatctgagggacaagattttttgttagtaggggggggggaattatATCATAAAGAAA-A-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-CGG-CT-CT-CGTT--G-ATTAAAAA-T--AGCGTT-AAG-GAT--G-TTTG--ACCT--C-TT-CACCGT---------A----------CAAG-ATTC---C------------AA---CATCTGTT--AGAA-
gi|11 : gctgatatcatttagtttggcgtcttctgtttgataagaagatggcattgatgtcagaggtttATCAATAAGAAA-A-TTGTC-TC--TGT-A-GA-AA-T---------GCAT-----CATTGCAGT-T-CT-CGTT--G-ATCAAAAA-T--AGCGCT-AAG-GAT--G-TTTG--ACCTCCC-TT-CGCCGT---------A----------AAT--ACT----C------------CA---CAca
gi|12 : tcatttaacgaaaatcttgagacataaattgtttttgttattaggggaaattttATCATAAAGAAA---CTG-C-TC--TTTTG-GA-TA-T--TG---AAACAT-----CATT-CAGT-T-CT-CGTT--A-GTTAAAA--T--AGCGTT-ATG-GAT--G-TTTG--ATCT--C-TT-CGTCGatattccaagacatcaagtaatg
gi|13 : aatcataacaataatcatgaggacaagattttttgttaagtaaggggggggggggtttG-AGTGGTCAACTGGAAGT-T---GAATTGT---CTTCC-TC-CAATTAT-TT---ATCAGGG-C-GGAAA------TAAGAATAGGA-TCAC--TCCC-CGTA--T-CTC-TAAGGCAT--TT-GCAGAATGCAGTAAAA------CGTA-CTCGACTTCCAGTA-AAAGAA
gi|14 : ATCATAAAGAAA-A-TTG-C-TC--TGT-A-GA-AG-T--TGT--AATTAT-----CATT-CAGT-T-CT-CGTT--G-GTTAAAAA-T--AGCGCA-AAT-GAT--G-GTTG--ACCT--C-TT-CGCCGT---------A----------taa
gi|15 : atcataacgataatcttgaggacaagatttggggaatttTAGG--ATATCGTAACACCTCTCACAAGCCAAGCGAAAGCG--AGATAAAAAAAAAAACAACAACACTATT---------TCCCCGTGATTC-GAATAAACAATCCAAGAACA--GTCCACATTCTTGTTag
gi|16 : ATTTT--CT-GC-CTC---C-CATT-ATTTAACAGGT--A--AGATTA--TAAG-TGTATCCAC--T-C-GCGCGTATTTC-AGAGTTAAATTCATTTG-ATT-C-AGAG
gi|17 : gaaattgcaaagttgaAAGAAATA-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAC-----CA-T-CGG-CT-CT-CGTG--G-ATTAAAAA-A--CGC-CT-AAG-GAT--G-TTTG--AC----C-TT-CGCCGA---------A----------C
gi|18 : AAAGAAA---TTG-C-TC--TCT-GCGA-AA-TCTTGTCAAAACAT-----CATT-CGTCCT-CT-CGTT--G-ATTAAAAtccaagacaaagtaaa
gi|19 : CAG--TCAACAGAATCCAGTAAAA-T----CGGA-TTCGTCTTCCAGTA-ATGG-AATATTTCTCT
gi|2 : ATCATAAAGAAA-A-TTGGC-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-C--TCG-CT-CGTT--G-ATTAAAA--T--AGCGTT-AAG---T--G-TTTG--ACCT--C-TT-CGCCGT---------A----------CAG--ATT----C------------AA---CATCTGTT--AGAA-AC---------A--ACGTAGA-GT-GCAA----A-ACA------C-TCGTGA-TCATGTA-T--TG-TAGTGAC-CAGGGAAAGTAAA-CAAATAA----------TTAGT--ATG-C-AAAAGAGATGCAA-TT--CGA-TTAG-CAAA-T--A---AGG-AAAGGAATCTTGGAGGGTGAACGC-T-AGTATC--TGTAT--AAATA-AGAGGTGGT--A-------T----ATCATAATCGTCAGT---GGT-AAACTGGAGGTTATAAATGATTGT--CT-CC-TTCT--T-AATTGAT---ACAGGTG-A--GTCTT---TAAG-CGTATCCAA--T-A-TCGCGTATTTT-AAATTTAAA-TTATTTG-ATT-C-AGAGGG-TT-CAGTTAA--TATTT-TA-TTT-GATAG---AATTTTCAG-TTAAT---ATGTTATTTTCAGAAT--TTTATGTAAAAACATTTATGTTGTA---AATGTTTG-TATTTAATTTTAATATTCATTGTT-AATCAATGTT-TATTATTTCCATGTTTATA-TATAATAAAG-AGTGGT-AACTGGAGGTAT---GA-TTGT---CTCCT-TCTTAATTGGATT---A-CAGGA-C-GGGAA------TAAGAACAGGA-CCAC--TCCC-CGTA--C-CTG-TGGGGCAC--TCAACAGAATCCAGTAAAA-T----CGGA-TTCGACTTCCAGTA-AAGGAAATAGTCCTCTTTCAT--A-AGTG-----GATTTTCATTTGCGTTC-TGAC-TTGTTC-TTTTATCAG-CCCTAAAAC-AAATC-TTCATC---AAACTATC---GTAATG-AACAC-AAAAC-----GAAGTC--ATTAGG-GCTGATAATAAGAAT-TTGTCAGCACTATGAG-TAT-CCACAATTTCGTTGGATTTTCGAGACAATAACA-CCA---ATAGATCAAGTGGTGGATCC-----GGCCTAACACGAGG-CTAGG--ATATCGTAACACCTCTCACAAGCCAAGGG--AGTGC-AG----------------------TATT---------TCCCCGTCA-TCAAAATAAACAATTGAAGTACA--ATAT-------------GAAACGTGGTGCTGAGAATTCGG-GG----TTCGTTTCAAATAATGATCTATTAATTCCAAGTACACTACGCTCTGTCCTTCTTTATTTat
gi|3 : ATCATAAAGAAA-A-TTG-C-TC--TGT-A-GA-AA-T--TG------CAT-----CATT-CAGT-T-CT-CGTT--G-ATCAAAAA-T--AGCGCT-AAG-GAT--G-TTTG--ACCC--CCTT-CGCCGT---------AAAATACTCCACAAT-ATT----CCAAGACATCAGTAATGCCATCTGTT--AGGA-ACGTCAAAGTTA--ACTTAGA-GT-TCAG----ATACATATGTAC-TCATGA-TCATGTG-C--TT-TAGTGAC-CAGGAAAAGTAAA-CAAATAAATTGAAATAATTAGT--ATG-T-AAGAAAAATGCAT-TT--CGA-TTAT-CAAA-T--A---AGG-TAAGGAATCTTGGAGGGTGAACGC-T-AGT-TC--CGTAT--AAATA-AGAGACGGCAAA-------TTCAAATTATAACCCTCATT---ATT-AAATTGAAGGTTA-----GATTGT--CTGCC-CAA---T-TATTGAA---ACAGG------------------------------T-A-CCGCGTATTTT-AGTGTTAAATTTAATTG-ATT-C-AGAGGG-TT-CAGTTAA--TATTT-TATTTT-TACAG---AATTTTT------------TGTTATT------AT--TTTATGTAAGAATATTTATGTTGTAAAGAATGTTTG-
gi|3 : atatcatttaacgaaaatcttgaggacaaaattgttttgttaataggggaaatttTTTTTNNNNNTGAACGC-T-AGT-TC--CGTAT--AAATgttttttnnnnntgaacgctagttccgtataaat
gi|4 : atatcatttaacgaaaatcttgaggacaaaattgttttgttaataggggaaatttatcataaagaaaattgctctgtagaaattgcatcattcagttctcgttgatcaaaaatagcgctaaggatgtttgacccccttcgccgtaaaatactccacaatattccaagacatcagtaatgccatctgttaggaacgtcaaagttaacttagagttcagatacatatgtactcatgatcatgtgctttagtgaccaggaaaagtaaacaaataaattgaaataattagtatgtaagaaaaatgcatttcgattatcaaataaggtaaggaatcttggagggtgaacgctagttccgtataaataagagacggcaaattcaaattataaccctcattattaaattgaaggttagattgtctgcccaattattgaaacaggtaccgcgtattttagtgttaaatttaattgattcagagggttcagttaatattttatttttacagaattttttgttattattttatgtaagaatatttatgttgtaaagaatgtttggtATCATAAAGAAA-A-ATG-CCTC--TGT-G-GA-AAAT--TGT--AAACATGCAGGCATT-CGGACTGCTACGTTATG-ATTAAAAA-TTAGGCGTT-AAGCGAT--GATTTG--ACCT--C-TT-CGA-GT---------A----------CAAGAATT----C------------CA---C-TCTGTT--AGAATGT---------A--ACGTAGA-GTTGCAA----A-ACA------CGTCGTGAATCATGTAGT--TGGTAGTGAC-CAGGGAAAGTAAAACAAATCA----------TTAGCTGATGGCCAAGAGAGAGGTAA-TTGTTGA-TTAGGCAAAAT--A---AGG-AAAGGAATCTTGGGAGGTGAACTC-T-AGTATC--TGTAT--AAATACAGAGGTGGA--AT------T----ATCATAATCGCCAGT---GGT-TAACTGATGGTTATGA-----TGTCACT-CC-TTC---TAAAGTGATA--ACAGGT--ATGG--TCCTATAAGCCGTATCTAA--TAA-TCGCATAGTTT-AAATTTAAA-TTATTTGAATT-CGAGAGGGTTT-CAGTAGA--TACTT-TATTTTATA-AGAAAAATTTTCAGTTTAACATAATTTTATTTTC---
gi|5 : attatCATAA-GAAA-A-TTG-T-TCCTTTT-G-GAGAA-T--TGT--AAA-AT-----CATT-CGGCCT-CT-CGTT--GCGTTAAAAACT--AGCGTTTAAG-GAT--G-TTTGCGACCT--C-TTTCGCCGT---------A----------CAAG-ATT----C------------AA---CATCTGTTACACAA-AC---------A--A-GT-GA-GT-GCAA----A-ACA------C-TCGTGA--CATGTA-TTCTG-TATGGACGCAGGGAAAGTAAA-CAAATAAT---------TTAGT---TGGCTAAAAGAGATGCAAGTT--CGA--TAG-CAAA-T--AATCAAG-GAAGGAATCTTGGAGAGTG-ACGCTT-AGTATCTTTGTAT--AATAA-AGAGGTGG---A-------T-----TCATAATCGTCAGT---GGT--AACTGGAGGTTATGA
gi|6 : GA-C-GGGGA------TAAGAACAGGA-C-AC--TCCC-CGTAAAC-CTG-TGGG-CAT--TTA-CAGA--CCAGTAAAAAT----CG-A-TTCGACTTCCAGTA-AAGGAAATAAACCGAGCTAATTAA--GTGTG---GATTTCAA--AGCGTGCTTGAC-TTTTTCTTTTTATCAG-CCCTAAAAC--AAT--TTC------AAACAACCTTTTTTATG--ACACAAAAA----CTGAAGTC--ATTAGGTTCTGATAATAAGAAATTTGCCAGTACGATGAGTTTT-CCAAACTTTCG-TGGATTTTC------ATAACGCtt
gi|7 : TTTTTNNNNNTGAACGC-T-AGT-TC--CGTAT--AAATA-AGAGACGGCAAA-------TTCAAATTATAACCCTCATT---ATT-AAATTGAAGGTTA-----GATTGT--CTGTC-CAA---T-TATTGAA---ACAGG------------------------------T-A-CCGCGTATTTT-AGTGTTAAATTTAATTG-ATT-C-AGATGG-TT-CAGTTAA--TATTT-TATTTT-TACAG---AATTTTCAG-TTAAT-----------------AT--TTTATGTAAGAATATTTATGTTGTAAAGAATGTTTG-
gi|8 : tgttgtaaagaatgtttggt-TGGATATTGGAGACAATACCGCT-AGACATAAA---AGTGGTGGATCCC----GTCCTAATACG--G-ATA-----TATCGTAACACCTCTCAAATACCA--GC--AATTA-AGA---------------------TATTAACGGAACATTCTCATAA-AC--AACAAACAACAAAATAACATCATATATATT-TTGTTACGATAAGTAGTGCTGAGAATTCGG-GG---TTTCGTTTCAAAgtt
gi|9 : aattggtATCATAAAGAAA-A-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-CGG-CT-CT-CGTT--G-ATTAAAAA-A--AGCGCT-AAG-GAT--G-TTTG--ACCT--C-TT-CGTCGTAACTCCAAGA----------CAA--AGTAA--T------------AA---CATCTGCT--AGAA-AC---------A--ATGTAAACGT--CAAGGTTA-ACT------C-TCATGA-TAATGTA-T--TG-TAGTGAC-CAGGGG----AAA-TAAATAA----------TTAGc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TAAACAATCCAAGAACAGTCCACGTTTTTTTGTTACGAT
Alignments
lowQualScore : 11111111111111111111111111111111
lowQualScore : 11 555555555555555555555555555555555555555 222222222222 2222222222222222222222 1111 3333333333 111 111 11 111111 1 11 66666666666666666 111 11 222222 2222222222 11 00000000000000000000000000000000 11 11 111 1111 222222 222 1 1 1 1 1 1 333333 1 222 1 1 444444444 1 1 222222 1 11 1 1111 1 11111 222222 2222 1 1 1 1 1 1 33333 222 222 1 333333333333 11 111 11 1 1 1 1 22 2222 3333 11 11 77777777777777777777777777777 1 1 5555555555555555555555555555555 2222 2222 222222
lowQualScore : 555 6 3 44 3 3 3 3 44 555 88888 3 66 3 3 77 3 3 55 3 3 55 3 55 55 3 3 666 888888888888888888888888888888888888888 888 77 5 666666666666 1 6 8888888888888888888888 6 3333 6 6 2 6 5555555555 111 999 8 11 88 8 8 666666 8 0 5 5 9 33 77 6 55555555555555555 2 111 00 888888 99 3333333333 7777 44 99999999999999999999999999999999 888 6 1 1 6 6 6 8 8 11 8 88 6 444 0 8 9999 3 66 888888 111 0 5 5 5 3 3 6 222222 3 333 3 3 000000000 0 0 888888 0 2 33 0 7777 0 2 66666 6 555555 8 8 8 3 1 6666 2 3 7 6 3 3 3 3 11111 6 333 333 7 3 222222222222 7 88 888 7 88 3 3 3 7 0 33 11 7 8888 0000 1 7 44 2 33 3 3 66666666666666666666666666666 3 3 1 0 0 8 77 1 0000000000000000000000000000000 8888 7 4444 1 1 999999 1
lowQualScore : ... . . .. . . . . .. ... ..... . .. . . .. . . .. . . .. . .. .. . . ... ....................................... ... .. . ............ . . ...................... . .... . . . . .......... ... ... . .. .. . . ...... . . . . . .. .. . ................. . ... .. ...... .. .......... .... .. ................................ ... . . . . . . . . .. . .. . ... . . .... . .. ...... ... . . . . . . . ...... . ... . . ......... . . ...... . . .. . .... . . ..... . ...... . . . . . .... . . . . . . . . ..... . ... ... . . ............ . .. ... . .. . . . . . .. .. . .... .... . . .. . .. . . ............................. . . . . . . .. . ............................... .... . .... . . ...... .
lowQualScore : 888 7 3 66 3 3 3 3 66 888 33333 3 66 3 3 99 3 6 00 6 6 00 6 00 00 6 6 444 000000000000000000000000000000000000000 888 99 7 888888888888 0 7 5555555555555555555555 7 3333 7 7 5 7 8888888888 888 222 0 00 88 0 0 000000 0 3 7 7 0 66 99 7 33333333333333333 5 777 22 111111 22 5555555555 8888 22 55555555555555555555555555555555 333 7 0 7 7 7 7 0 0 00 0 66 4 000 8 0 6666 8 22 222222 000 0 5 5 5 3 3 7 777777 3 333 3 3 000000000 0 0 888888 0 5 88 0 8888 0 5 88888 0 888888 8 0 0 8 0 7777 3 3 3 7 3 3 3 3 33333 7 333 777 3 3 333333333333 3 33 333 3 33 3 3 3 3 0 22 77 3 3333 0000 0 3 33 5 88 2 2 22222222222222222222222222222 2 2 0 0 5 0 88 0 2222222222222222222222222222222 3333 3 0000 0 0 000000 0
consensus : ATCATAAAGAAA-A-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-CGGTCT-CT-CGTT--G-ATTAAAAA-T--AGCGCT-AAG-GAT--G-TTTG--ACCT--C-TT-CGCCG---TA----------CAAGA-T----T----C------------AA---CATCTGTT--AGAA-AC---------A--ACGTAGA-GT-GCAA----A-ACA------C-TCGTGA-TCATGTA-T--TG-TAGTGAC-CAGGGAAAGTAAA-CAAATAA----------TTAGT--ATGGC-AAGAGAGATGCAA-TT--CGA-TTAG-CAAA-T--A---AGG-AAAGGAATCTTGGAGGGTGAACGC-T-AGTATC--CGTAT--AAATA-AGAGGCGGC--A-------T----ATCATAACCGTCAGT---GGT-AAACTGGAGGTTATGAATGATTGT--CT-CC-CTC---T-TA-TTGA-AACAGGT--A--G--T--T---TAAG-CGTATCCAA--T-A-TCGCGTATTTT-AGANTTAAATTTATTTG-ATT-C-AGAGGG-TT-CAGTTAA--TATTT-TATTTT-TACAG---AATTTTCAG-TTAAT---ATNTTATTTTCA---T--TTTATGTAAGAACATTTATGTTGTAAAGAATGTTTG-TATTTAATTTTAATATTCATTGTTAAATCAATGTTATATTATTTCCATGTTTATATTATAATAAAGA-GTGGT-AACTGGAAGT-T----GA-TTGT---CTCCT-TCT-AATTN--TT-A--CAGGA-C-GGGAA------TAAGAACAGGA-CCAC--TCCC-CGTA--C-CTGT-GGGGCATT--CAACAGAATCCAGTAAAA-T----CGNATT-CGACTTCCAGTA-AAGGAAATANTCCTCTTTCATT-A-AGTGCGGA-TTTCCATTTGCGTTC-TGAC-TTGTTC-TTTTATCAGCCC-TAAAACAAA-TC-TTCATC---AAACTACC-TTTTAATGA-CAC-A--AAAC---TGAAGTCAT--TAGG-GCTGATAATAAGAA--TT-GTCAGCACGATGAG-TAT-CCACAATTTCGT-GGATTTTCGAGACAATAACGCC-AATAGATCA----AGTGGTGGATCCC---GNCCTAACACGAGG-NTAGG--ATATCGTAACACCTCTCACAAGCCAAGGGAGTGCGAGA---TA--AAAGAAA-----------CTATTTCCCCGTNAT-CGAA-TAAACAATCNAAGAACA--GTNCACA---TT-TTGTTACGATA-GTGGTGCTGAGAATTCGG----GGTTTCGTTTCAAATGATGATCTATTAATCNCNAGTACACTACGCTCTGNCCTTCCTCATTT
Reference ( family-511 ) : ATCATAAAGAAA-A-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-CGGTCT-CT-CGTT--G-ATTAAAAA-T--AGCGCT-AAG-GAT--G-TTTG--ACCT--C-TT-CGCCG---TA----------CAAGA-T----T----C------------AA---CATCTGTT--AGAA-AC---------A--ACGTAGA-GT-GCAA----A-ACA------C-TCGTGA-TCATGTA-T--TG-TAGTGAC-CAGGGAAAGTAAA-CAAATAA----------TTAGT--ATGGC-AAGAGAGATGCAA-TT--CGA-TTAG-CAAA-T--A---AGG-AAAGGAATCTTGGAGGGTGAACGC-T-AGTATC--CGTAT--AAATA-AGAGGCGGC--A-------T----ATCATAACCGTCAGT---GGT-AAACTGGAGGTTATGAATGATTGT--CT-CC-CTC---T-NA-TTGA-NACAGGT--A--G--T--T---TAAG-CGTATCCAA--T-A-TCGCGTATTTT-AGANTTAAATTTATTTG-ATT-C-AGAGGG-TT-CAGTTAA--TATTT-TATTTT-TACAG---AATTTTCAG-TTAAT---ATNTTATTTTCA---T--TTTATGTAAGAACATTTATGTTGTAAAGAATGTTTG-TATTTAATTTTAATATTCATTGTTAAATCAATGTTATATTATTTCCATGTTTATATTATAATAAAGA-GTGGT-AACTGGAAGT-T----GA-TTGT---CTCCT-TCT-AATTG--TT-A--CAGGA-C-GGGAA------TAAGAACAGGA-CCAC--TCCC-CGTA--C-CTGT-GGGGCATT--CAACAGAATCCAGTAAAA-T----CGNATT-CGACTTCCAGTA-AAGGAAATANTCCTCTTTCATTGA-AGTGTGGA-TTTCCATTTGCGTTC-TGAC-TTGTTC-TTTTATCAGCCC-TAAAACAAA-TC-TTCATC---AAACTACC-TTTTAATGA-CAC-A--AAAC---TGAAGTCAT--TAGG-GCTGATAATAAGAA--TT-GTCAGCACGATGAG-TAT-CCACAATTTCGT-GGATTTTCGAGACAATAACGCCCAATAGATCA----AGTGGTGGATCCC---GNCCTAACACGAGG-NTAGG--ATATCGTAACACCTCTCACAAGCCAAGGGAGTGC-AGA---TA--AAAGAAG-----------CTATTTCCCCGTNAT-CGAA-TAAACAATCGAAGNACA--ATNTACA---TT-TTGTT-CGATA-GTGGTGCTGAGAATTCGG----GGTTTCGTTTCAAATGATGATCTATTAATCNCNAGTACACTACGCTCTGNCCTTCCTCATTT
gi|1 : TCATAAAGAAA-AATTG-C-TC--TCT-G-GA-AA-T--TGT--AAACAT-----CATT-CG--CT-CT-CGTTT-G-ATTAAAAA-T--AGC-CT-AAG-GATAAG-TTTG--ACCT--C-TT-CGCCG---CAACT-------CAAGA-CAAAGTAAAAT------------AA---CATCTGTT--AGAA-AC---------ACTGCGTAGA-GT-----------------------------TCA------------AGTGAC-CGGGGAAA-TAAA-CAAATAA----------T-AGT--ATGGC-AAGAAAGATGCAA-TT--CGAATTAG-CAAA-TTTA---CGGTAAAGGAATCTTGGAGG-TGAACGC-TTAGT-TCA-TGTATTAAAATG-AG-GGCT-C--ACTCATCCT----CTCACTACTTCTAGTTCTGGTGAAACTGGACGTAGTGAAT-ATTG---CT-CCTCTCGAAT-GG-TTAA-AACAGGTTTAC-G--T--T---TAAT-C----CCAAACT-AATCGCGTATTTTTAAACTTAAATTTATTTG-ATTTC-AGAGGG-TTTCAGTTAAGCTATTCATATTTT--ATAG---AATTTTCAG-TTAAT---ATCTTATTTTCA---GGATTTATGTAAAAACATTTATGTTGTAAAT--TGTTTGATATTTAATTTTAATATTCATTGTTAAATCAATGTTATATTATTTCCATGTTTATATTATAATAAAGAAGTGGT-AA-TGGAAGT-TTTTGAA-TTCTATGCTCCTCTCT-AACTC--TT-AAACAGGAGCAGGGAAATCAAGTAAGCATGGCAGCCACCTTCCCTCGTA--CACTGTTGGGGCATCACCCACA-ATTCCAGAACAA-TGCGACGCATTTCGACTTCCAGTATAAAGGAATATTTCTCTTACAGTGATAGTGCGAAATGTCCATTTG-GTTC-TGATGTTGTTC-TTTTATCAGCCCCTAAAACAAAATCGTTCATTGCAAAACTA---TTTTAATGC-CAC-CCCACACCCCTGA-GTCATATTAGG-G-TGATA-TAAGAA--TT-GTCAGCACGATGAG-TATCCCACAA-TTCGT-GGAGTTTCGGGACAATAACACCCAATAGATCA----AGTGGTGGATCCCGGGGACCTAACACGAGGTGTAGGATATATCGTAAC-CCTCTCACAAGCCAAGGGAGTGCGAGATTTTA--AAAGAAG-----------CTATTTCCCCGTCAT-CAAA-TAAACAATTAATGCAC--------CA---CC-TTCTT-CAAT-----GTGCTGAAAATTCGGTAGAGCTTTCGTATCAAATGATG----ATTAATCACCAGTA------ACTTTGGCTTTTCTCATTT
gi|10 : attattattcataacgataatctgagggacaagattttttgttagtaggggggggggaattatATCATAAAGAAA-A-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-CGG-CT-CT-CGTT--G-ATTAAAAA-T--AGCGTT-AAG-GAT--G-TTTG--ACCT--C-TT-CACCG---TA----------CAAGA-T----TC---C------------AA---CATCTGTT--AGAA-
gi|11 : gctgatatcatttagtttggcgtcttctgtttgataagaagatggcattgatgtcagaggtttATCAATAAGAAA-A-TTGTC-TC--TGT-A-GA-AA-T---------GCAT-----CATTGCAGT-T-CT-CGTT--G-ATCAAAAA-T--AGCGCT-AAG-GAT--G-TTTG--ACCTCCC-TT-CGCCG---TA-----------AATA-C----T----C------------CA---CAca
gi|12 : tcatttaacgaaaatcttgagacataaattgtttttgttattaggggaaattttATCATAAAGAAA---CTG-C-TC--TTTTG-GA-TA-T--TG---AAACAT-----CATT-CAGT-T-CT-CGTT--A-GTTAAAA--T--AGCGTT-ATG-GAT--G-TTTG--ATCT--C-TT-CGTCG---atattccaagacatcaagtaatg
gi|13 : aatcataacaataatcatgaggacaagattttttgttaagtaaggggggggggggtttGA-GTGGTCAACTGGAAGT-T----GAATTGT---CTTCC-TCC-AATTA--TTTAT-CAGGG-C-GGAAA------TAAGAATAGGA-TCAC--TCCC-CGTA--T-CTCT-AAGGCATT--T-GCAGAATGCAGTAAAA------CGTACT-CGACTTCCAGTA-AAAGAA
gi|14 : ATCATAAAGAAA-A-TTG-C-TC--TGT-A-GA-AG-T--TGT--AATTAT-----CATT-CAGT-T-CT-CGTT--G-GTTAAAAA-T--AGCGCA-AAT-GAT--G-GTTG--ACCT--C-TT-CGCCG---TA----------taa
gi|15 : atcataacgataatcttgaggacaagatttggggaatttTAGG--ATATCGTAACACCTCTCACAAGCCAAGCGAAAGCGAGA---TA--AAAAAAAAAACAACAACACTATTTCCCCGTGATTCGAA-TAAACAATCCAAGAACA--GTCCACA---TTCTTGTT-ag
gi|16 : ATTTT--CT-GC-CTCCCAT-TA-TTTA--ACAGGT--A--AGAT--TA--TAAG-TGTATCCAC--T-C-GCGCGTATTTC-AGAGTTAAATTCATTTG-ATT-C-AGAG
gi|17 : gaaattgcaaagttgaAAGAAATA-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAC-----CA-T-CGG-CT-CT-CGTG--G-ATTAAAAA-A--CGC-CT-AAG-GAT--G-TTTG--AC----C-TT-CGCCGAACTC----------CAAGA-
gi|18 : AAAGAAA---TTG-C-TC--TCT-GCGA-AA-TCTTGTCAAAACAT-----CATT-CGTCCT-CT-CGTT--G-ATTAAAAcaaagtaaa
gi|19 : CAGT--CAACAGAATCCAGTAAAA-T----CGGATT-CGTCTTCCAGTA-ATGG-AATATTTCTCT
gi|2 : ATCATAAAGAAA-A-TTGGC-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-C--TCG-CT-CGTT--G-ATTAAAA--T--AGCGTT-AAG---T--G-TTTG--ACCT--C-TT-CGCCG---TA----------CA-GA-T----T----C------------AA---CATCTGTT--AGAA-AC---------A--ACGTAGA-GT-GCAA----A-ACA------C-TCGTGA-TCATGTA-T--TG-TAGTGAC-CAGGGAAAGTAAA-CAAATAA----------TTAGT--ATG-C-AAAAGAGATGCAA-TT--CGA-TTAG-CAAA-T--A---AGG-AAAGGAATCTTGGAGGGTGAACGC-T-AGTATC--TGTAT--AAATA-AGAGGTGGT--A-------T----ATCATAATCGTCAGT---GGT-AAACTGGAGGTTATAAATGATTGT--CT-CC-TTC---T-TAATTGA-TACAGGTG-A--G--TCTT---TAAG-CGTATCCAA--T-A-TCGCGTATTTT-AAATTTAAATT-ATTTG-ATT-C-AGAGGG-TT-CAGTTAA--TATTT-TATTTG--ATAG---AATTTTCAG-TTAAT---ATGTTATTTTCAGAAT--TTTATGTAAAAACATTTATGTTGTAAA---TGTTTG-TATTTAATTTTAATATTCATTGTTAA-TCAATGTT-TATTATTTCCATGTTTATAT-ATAATAAAGA-GTGGT-AACTGGAGGTAT----GA-TTGT---CTCCT-TCTTAATTGGATT-A--CAGGA-C-GGGAA------TAAGAACAGGA-CCAC--TCCC-CGTA--C-CTGT-GGGGCACT--CAACAGAATCCAGTAAAA-T----CGGATT-CGACTTCCAGTA-AAGGAAATAGTCCTCTTTCAT--A-AGTG--GA-TTTTCATTTGCGTTC-TGAC-TTGTTC-TTTTATCAGCCC-TAAAACAAA-TC-TTCATC---AAACTATC-GT--AATGAACAC-A--AAAC----GAAGTCAT--TAGG-GCTGATAATAAGAA--TTTGTCAGCACTATGAG-TAT-CCACAATTTCGTTGGATTTTCGAGACAATAACACC-AATAGATCA----AGTGGTGGATCC----GGCCTAACACGAGG-CTAGG--ATATCGTAACACCTCTCACAAGCCAAGGGAGTGC-AG---------------------------TATTTCCCCGTCAT-CAAAATAAACAATTGAAGTACA--ATAT----------------GAAACGTGGTGCTGAGAATTCGG----GGTT-CGTTTCAAATAATGATCTATTAATTCCAAGTACACTACGCTCTGTCCTTCTTTATTTat
gi|20 : -TAAACAATCCAAGAACA--GTCCACGTTTTT-TTGTTACGAT
gi|3 : ATCATAAAGAAA-A-TTG-C-TC--TGT-A-GA-AA-T--TG------CAT-----CATT-CAGT-T-CT-CGTT--G-ATCAAAAA-T--AGCGCT-AAG-GAT--G-TTTG--ACCC--CCTT-CGCCG---TAAAATACTCCACAATA-T----T----CCAAGACATCAGTAATGCCATCTGTT--AGGA-ACGTCAAAGTTA--ACTTAGA-GT-TCAG----ATACATATGTAC-TCATGA-TCATGTG-C--TT-TAGTGAC-CAGGAAAAGTAAA-CAAATAAATTGAAATAATTAGT--ATG-T-AAGAAAAATGCAT-TT--CGA-TTAT-CAAA-T--A---AGG-TAAGGAATCTTGGAGGGTGAACGC-T-AGT-TC--CGTAT--AAATA-AGAGACGGCAAA-------TTCAAATTATAACCCTCATT---ATT-AAATTGAAGGTTA-----GATTGT--CTGCC-CAA---T-TA-TTGA-AACAGG--------------------------------T-A-CCGCGTATTTT-AGTGTTAAATTTAATTG-ATT-C-AGAGGG-TT-CAGTTAA--TATTT-TATTTT-TACAG---AATTTTT------------TGTTATT---A---T--TTTATGTAAGAATATTTATGTTGTAAAGAATGTTTG-
gi|3 : atatcatttaacgaaaatcttgaggacaaaattgttttgttaataggggaaatttTTTTTNNNNNTGAACGC-T-AGT-TC--CGTAT--AAATgttttttnnnnntgaacgctagttccgtataaat
gi|4 : atatcatttaacgaaaatcttgaggacaaaattgttttgttaataggggaaatttatcataaagaaaattgctctgtagaaattgcatcattcagttctcgttgatcaaaaatagcgctaaggatgtttgacccccttcgccgtaaaatactccacaatattccaagacatcagtaatgccatctgttaggaacgtcaaagttaacttagagttcagatacatatgtactcatgatcatgtgctttagtgaccaggaaaagtaaacaaataaattgaaataattagtatgtaagaaaaatgcatttcgattatcaaataaggtaaggaatcttggagggtgaacgctagttccgtataaataagagacggcaaattcaaattataaccctcattattaaattgaaggttagattgtctgcccaattattgaaacaggtaccgcgtattttagtgttaaatttaattgattcagagggttcagttaatattttatttttacagaattttttgttattattttatgtaagaatatttatgttgtaaagaatgtttggtATCATAAAGAAA-A-ATG-CCTC--TGT-G-GA-AAAT--TGT--AAACATGCAGGCATT-CGGACTGCTACGTTATG-ATTAAAAA-TTAGGCGTT-AAGCGAT--GATTTG--ACCT--C-TT-CGA-G---TA----------CAAGAAT----T----C------------CA---C-TCTGTT--AGAATGT---------A--ACGTAGA-GTTGCAA----A-ACA------CGTCGTGAATCATGTAGT--TGGTAGTGAC-CAGGGAAAGTAAAACAAATCA----------TTAGCTGATGGCCAAGAGAGAGGTAA-TTGTTGA-TTAGGCAAAAT--A---AGG-AAAGGAATCTTGGGAGGTGAACTC-T-AGTATC--TGTAT--AAATACAGAGGTGGA--AT------T----ATCATAATCGCCAGT---GGT-TAACTGATGGTTATGA-----TGTCACT-CC-TTC---TAAA-GTGATAACAGGT--ATGG--T--CCTATAAGCCGTATCTAA--TAA-TCGCATAGTTT-AAATTTAAA-TTATTTGAATT-CGAGAGGGTTT-CAGTAGA--TACTT-TATTTTATA-AGAAAAATTTTCAGTTTAACATAATTTTATTTTC
gi|5 : attatCATAA-GAAA-A-TTG-T-TCCTTTT-G-GAGAA-T--TGT--AAA-AT-----CATT-CGGCCT-CT-CGTT--GCGTTAAAAACT--AGCGTTTAAG-GAT--G-TTTGCGACCT--C-TTTCGCCG---TA----------CAAGA-T----T----C------------AA---CATCTGTTACACAA-AC---------A--A-GT-GA-GT-GCAA----A-ACA------C-TCGTGA--CATGTA-TTCTG-TATGGACGCAGGGAAAGTAAA-CAAATAAT---------TTAGT---TGGCTAAAAGAGATGCAAGTT--CGA--TAG-CAAA-T--AATCAAG-GAAGGAATCTTGGAGAGTG-ACGCTT-AGTATCTTTGTAT--AATAA-AGAGGTGG---A-------T-----TCATAATCGTCAGT---GGT--AACTGGAGGTTATGA
gi|6 : GA-C-GGGGA------TAAGAACAGGA-C-AC--TCCC-CGTAAAC-CTGT-GGG-CATT--TA-CAGA--CCAGTAAAAAT----CG-ATT-CGACTTCCAGTA-AAGGAAATAAACCGAGCTAATT-A-AGTGTGGA-TTTCAA--AGCGTGCTTGAC-TTTTTCTTTTTATCAGCCC-TAAAACAA-----TT--TC---AAACAACCTTTTTTATGA-CACAA--AAAC---TGAAGTCAT--TAGGTTCTGATAATAAGAAATTT-GCCAGTACGATGAGTTTT-CCAAACTTTCGT-GGATTTTC------ATAACGCtt
gi|7 : TTTTTNNNNNTGAACGC-T-AGT-TC--CGTAT--AAATA-AGAGACGGCAAA-------TTCAAATTATAACCCTCATT---ATT-AAATTGAAGGTTA-----GATTGT--CTGTC-CAA---T-TA-TTGA-AACAGG--------------------------------T-A-CCGCGTATTTT-AGTGTTAAATTTAATTG-ATT-C-AGATGG-TT-CAGTTAA--TATTT-TATTTT-TACAG---AATTTTCAG-TTAAT--------------A---T--TTTATGTAAGAATATTTATGTTGTAAAGAATGTTTG-
gi|8 : tgttgtaaagaatgtttggtT-GGATATTGGAGACAATACCGC----TAGA-CATAAAAGTGGTGGATCCC---GTCCTAATACG--G-ATA-----TATCGTAACACCTCTCAAATACCA--GCAATTA-AGA---TATTAACGGAA-----------C-ATT--CTCATAAA-C-AA-CAAACAACAAAATAACATCATATATA---TT-TTGTTACGATAAGTAGTGCTGAGAATTCGG----GGTTTCGTTTCAAAgtt
gi|9 : aattggtATCATAAAGAAA-A-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-CGG-CT-CT-CGTT--G-ATTAAAAA-A--AGCGCT-AAG-GAT--G-TTTG--ACCT--C-TT-CGTCG---TAACTC------CAAGA-CAAAGTAA--T------------AA---CATCTGCT--AGAA-AC---------A--ATGTAAACGT--CAAGGTTA-ACT------C-TCATGA-TAATGTA-T--TG-TAGTGAC-CAGGGG----AAA-TAAATAA----------TTAGc
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 11 555555555555555555555555555555555555555 222222222222 2222222222222222222222 1111 3333333333 111 111 11 111111 1 11 66666666666666666 111 11 222222 22222222222222 000000000000000000000000000000 11 11 111 1111 2222222222 1 1 1 1 1 1 333333 1 222 1 1 333333333 1 1 222222 1 11 1 1111 1 11 222222 22222 1111 1 1 1 1 1 1111 222 3333 444444 1 11 111 33 1 1 1 1 222 222 11 11 77777777777777777777777777 1 22 3333333333333333 33333 2222 2222 222222
lowQualScore : 555 6 3 44 3 3 3 3 44 555 88888 3 66 3 3 77 3 3 55 3 3 55 3 55 55 3 3 666 888888888888888888888888888888888888888 888 77 5 666666666666 1 6 8888888888888888888888 6 3333 6 6 2 6 5555555555 111 999 8 11 88 8 8 666666 8 0 5 5 9 33 77 6 55555555555555555 2 111 00 888888 99 77777777777777 6 999999999999999999999999999999 888 6 1 7 6 6 6 8 8 11 8 0 33 6 444 0 8 9999 3 1111111111 6666 0 5 5 5 3 3 6 222222 3 333 3 3 777777777 0 0 888888 0 2 33 0 7777 0 2 11 99 6 555555 8 8 8 3 1 00000 3333 7 6 3 3 3 3 3 8888 6 333 1111 666666 3 7 7 88 888 7 11 3 3 7 0 33 0 333 7 6 333 1 7 44 2 33 3 3 2 6 11111111111111111111111111 3 3 1 0 00 22 111 5555555555555555 3 55555 8888 7 4444 1 1 999999 1
lowQualScore : ... . . .. . . . . .. ... ..... . .. . . .. . . .. . . .. . .. .. . . ... ....................................... ... .. . ............ . . ...................... . .... . . . . .......... ... ... . .. .. . . ...... . . . . . .. .. . ................. . ... .. ...... .. .............. . .............................. ... . . . . . . . . .. . . .. . ... . . .... . .......... .... . . . . . . . ...... . ... . . ......... . . ...... . . .. . .... . . .. .. . ...... . . . . . ..... .... . . . . . . . .... . ... .... ...... . . . .. ... . .. . . . . .. . ... . . ... . . .. . .. . . . . .......................... . . . . .. .. ... ................ . ..... .... . .... . . ...... .
lowQualScore : 888 7 3 66 3 3 3 3 66 888 33333 3 66 3 3 99 3 6 00 6 6 00 6 00 00 6 6 444 000000000000000000000000000000000000000 888 99 7 888888888888 0 7 5555555555555555555555 7 3333 7 7 5 7 8888888888 888 222 0 00 88 0 0 000000 0 3 7 7 0 66 99 7 33333333333333333 5 777 22 111111 22 22222222222222 7 555555555555555555555555555555 333 7 0 3 7 7 7 0 0 00 0 8 66 4 000 8 0 6666 8 9999999999 0000 0 5 5 5 3 3 7 777777 3 333 3 3 333333333 0 0 888888 0 5 88 0 8888 0 5 00 44 0 888888 8 0 0 8 0 77777 7777 3 7 3 3 3 3 3 0000 7 333 0000 000000 3 3 3 33 333 3 77 3 3 3 0 22 0 333 3 7 333 0 3 33 5 88 2 2 5 5 88888888888888888888888888 2 2 0 0 55 44 888 6666666666666666 2 00000 3333 3 0000 0 0 000000 0
consensus : ATCATAAAGAAA-A-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-CGGTCT-CT-CGTT--G-ATTAAAAA-T--AGCGCT-AAG-GAT--G-TTTG--ACCT--C-TT-CGCCG---TA----------CAAGA-T----T----C------------AA---CATCTGTT--AGAA-AC---------A--ACGTAGA-GT-GCAA----A-ACA------C-TCGTGA-TCATGTA-T--TG-TAGTGAC-CAGGGAAAGTAAA-CAAATAA----------TTAGT--ATGGC-AAGAGAGATGCAA-TT--CGA-TTAG-CAAA-T--A---AGG-AAAGGAATCTTGGAGGGTGAACGC-T-AGTATC--CGTAT--AAATA-AGAGGCGGC--A-------T----ATCATAACCGTCAGT---GGT-AAACTGGAGGTTATGAATGATTGT--CT-CC-CTC---T-T-ATTGA-AACAGGT--A--G--TT---TAAG-CGTATCCAA--T-A-TCGCGTATTTT-AGANTTAAATTTATTTG-ATT-C-AGAGGG-TT-CAGTTAA--TATTT-TATTTT-TACAG---AATTTTCAG-TTAAT---ATNTTATTTTC---AT--TTTATGTAAGAACATTTATGTTGTAAAGAATGTTTG-TATTTAATTTTAATATTCATTGTTAAATCAATGTTATATTATTTCCATGTTTATATTATAATAAAG-AGTGGT-AACTGGAAGT-T----GA-TTGT---CTCCT-TC-TAATT--ATT--A-CAGGA-C-GGGAA------TAAGAACAGGA-CCAC--TCCC-CGTA--C-CTG-TGGGGCAT--TCAACAGAATCCAGTAAAA-T----CGNA-TTCGACTTCCAGTA-AAGGAAATANTCCTCTTTCA-TA--AGTGCG-GATTTCCATTTGCGTTC-TGAC-TTGTTC-TTTTATCAG-CCCTAAAAC-AAATC-TTCATC---AAACTACC-TTTTAATG--A---CAC-AAAACTGAAGTC--ATTAGG-GCTGATAATAAGAA--TTGTCAGCACGATGAG-TAT-CCACAATTTCG-TGGATTTTCGAGACAATAACG-CCA---ATAGATCAAGTGGTGGATCCC---GNCCTAACACGAGG-NTAGG--ATATCGTAACACCTCTCACAAGCCAAGGGAGTGCGAGA---TA--AAAGAA-----------ACTATTTCCCCGTNA-TC-GAATAAACAATCNAAGAACA--GTNCA-CA---TT-TTGTTACGATA-GTGGTGCTGAGAATTCGG----GGTTTCGTTTCAAATGATGATCTATTAATCNCNAGTACACTACGCTCTGNCCTTCCTCATTT
Reference ( family-511 ) : ATCATAAAGAAA-A-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-CGGTCT-CT-CGTT--G-ATTAAAAA-T--AGCGCT-AAG-GAT--G-TTTG--ACCT--C-TT-CGCCG---TA----------CAAGA-T----T----C------------AA---CATCTGTT--AGAA-AC---------A--ACGTAGA-GT-GCAA----A-ACA------C-TCGTGA-TCATGTA-T--TG-TAGTGAC-CAGGGAAAGTAAA-CAAATAA----------TTAGT--ATGGC-AAGAGAGATGCAA-TT--CGA-TTAG-CAAA-T--A---AGG-AAAGGAATCTTGGAGGGTGAACGC-T-AGTATC--CGTAT--AAATA-AGAGGCGGC--A-------T----ATCATAACCGTCAGT---GGT-AAACTGGAGGTTATGAATGATTGT--CT-CC-CTC---T-T-ATTGA-AACAGGT--A--G--TT---TAAG-CGTATCCAA--T-A-TCGCGTATTTT-AGANTTAAATTTATTTG-ATT-C-AGAGGG-TT-CAGTTAA--TATTT-TATTTT-TACAG---AATTTTCAG-TTAAT---ATNTTATTTTC---AT--TTTATGTAAGAACATTTATGTTGTAAAGAATGTTTG-TATTTAATTTTAATATTCATTGTTAAATCAATGTTATATTATTTCCATGTTTATATTATAATAAAG-AGTGGT-AACTGGAAGT-T----GA-TTGT---CTCCT-TC-TAATT--NTT--A-CAGGA-C-GGGAA------TAAGAACAGGA-CCAC--TCCC-CGTA--C-CTG-TGGGGCAT--TCAACAGAATCCAGTAAAA-T----CGNA-TTCGACTTCCAGTA-AAGGAAATANTCCTCTTTCATTA--AGTGCG-GATTTCCATTTGCGTTC-TGAC-TTGTTC-TTTTATCAG-CCCTAAAAC-AAATC-TTCATC---AAACTACC-TTTTAATG--A---CAC-AAAACTGAAGTC--ATTAGG-GCTGATAATAAGAA--TTGTCAGCACGATGAG-TAT-CCACAATTTCG-TGGATTTTCGAGACAATAACG-CCA---ATAGATCAAGTGGTGGATCCC---GNCCTAACACGAGG-NTAGG--ATATCGTAACACCTCTCACAAGCCAAGGGAGTGCGAGA---TA--AAAGAA-----------ACTATTTCCCCGTNA-TC-GAATAAACAATCNAAGAACA--GTNCA-CA---TT-TTGTTACGATA-GTGGTGCTGAGAATTCGG----GGTTTCGTTTCAAATGATGATCTATTAATCNCNAGTACACTACGCTCTGNCCTTCCTCATTT
gi|1 : TCATAAAGAAA-AATTG-C-TC--TCT-G-GA-AA-T--TGT--AAACAT-----CATT-CG--CT-CT-CGTTT-G-ATTAAAAA-T--AGC-CT-AAG-GATAAG-TTTG--ACCT--C-TT-CGCCG---CAACT-------CAAGA-CAAAGTAAAAT------------AA---CATCTGTT--AGAA-AC---------ACTGCGTAGA-GT-----------------------------TCA------------AGTGAC-CGGGGAAA-TAAA-CAAATAA----------T-AGT--ATGGC-AAGAAAGATGCAA-TT--CGAATTAG-CAAA-TTTA---CGGTAAAGGAATCTTGGAGG-TGAACGC-TTAGT-TCA-TGTATTAAAATG-AG-GGCT-C--ACTCATCCT----CTCACTACTTCTAGTTCTGGTGAAACTGGACGTAGTGAAT-ATTG---CT-CCTCTCGAAT-G-GTTAA-AACAGGTTTAC-G--TT---TAAT-C----CCAAACT-AATCGCGTATTTTTAAACTTAAATTTATTTG-ATTTC-AGAGGG-TTTCAGTTAAGCTATTCATATTTT--ATAG---AATTTTCAG-TTAAT---ATCTTATTTTC---AGGATTTATGTAAAAACATTTATGTTGTAAAT--TGTTTGATATTTAATTTTAATATTCATTGTTAAATCAATGTTATATTATTTCCATGTTTATATTATAATAAAGAAGTGGT-AA-TGGAAGT-TTTTGAA-TTCTATGCTCCTCTC-TAACT--CTTAAA-CAGGAGCAGGGAAATCAAGTAAGCATGGCAGCCACCTTCCCTCGTA--CACTGTTGGGGCATCACCCACA-ATTCCAGAACAA-TGCGACGCATTTCGACTTCCAGTATAAAGGAATATTTCTCTTACAGTGATAGTGCGAAATGTCCATTTG-GTTC-TGATGTTGTTC-TTTTATCAGCCCCTAAAACAAAATCGTTCATTGCAAAACTA---TTTTAATGCCACCCCAC-ACCCCTG-AGTCATATTAGG-G-TGAT-ATAAGAA--TTGTCAGCACGATGAG-TATCCCACAA-TTCG-TGGAGTTTCGGGACAATAACACCCA---ATAGATCAAGTGGTGGATCCCGGGGACCTAACACGAGGTGTAGGATATATCGTAAC-CCTCTCACAAGCCAAGGGAGTGCGAGATTTTA--AAAGAA-----------GCTATTTCCCCGTCA-TC-AAATAAACAATTAA---------TGCACCA---CC-TTCTT-CAAT-----GTGCTGAAAATTCGGTAGAGCTTTCGTATCAAATGATG----ATTAATCACCAGTA------ACTTTGGCTTTTCTCATTT
gi|10 : attattattcataacgataatctgagggacaagattttttgttagtaggggggggggaattatATCATAAAGAAA-A-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-CGG-CT-CT-CGTT--G-ATTAAAAA-T--AGCGTT-AAG-GAT--G-TTTG--ACCT--C-TT-CACCG---TA----------CAAGA-T----TC---C------------AA---CATCTGTT--AGAA-
gi|11 : gctgatatcatttagtttggcgtcttctgtttgataagaagatggcattgatgtcagaggtttATCAATAAGAAA-A-TTGTC-TC--TGT-A-GA-AA-T---------GCAT-----CATTGCAGT-T-CT-CGTT--G-ATCAAAAA-T--AGCGCT-AAG-GAT--G-TTTG--ACCTCCC-TT-CGCCG---TA-----------AATA-C----T----C------------CA---CAca
gi|12 : tcatttaacgaaaatcttgagacataaattgtttttgttattaggggaaattttATCATAAAGAAA---CTG-C-TC--TTTTG-GA-TA-T--TG---AAACAT-----CATT-CAGT-T-CT-CGTT--A-GTTAAAA--T--AGCGTT-ATG-GAT--G-TTTG--ATCT--C-TT-CGTCG---atattccaagacatcaagtaatg
gi|13 : aatcataacaataatcatgaggacaagattttttgttaagtaaggggggggggggtttG-AGTGGTCAACTGGAAGT-T----GAATTGT---CTTCC-TC-CAATT--ATTT-ATCAGGG-C-GGAAA------TAAGAATAGGA-TCAC--TCCC-CGTA--T-CTC-TAAGGCAT--TT-GCAGAATGCAGTAAAA------CGTA-CTCGACTTCCAGTA-AAAGAA
gi|14 : ATCATAAAGAAA-A-TTG-C-TC--TGT-A-GA-AG-T--TGT--AATTAT-----CATT-CAGT-T-CT-CGTT--G-GTTAAAAA-T--AGCGCA-AAT-GAT--G-GTTG--ACCT--C-TT-CGCCG---TA----------taa
gi|15 : atcataacgataatcttgaggacaagatttggggaatttTAGG--ATATCGTAACACCTCTCACAAGCCAAGCGAAAGCGAGA---TA--AAAAAAAAAACAACAACACTATTTCCCCGTGATTC-GAATAAACAATCCAAGAACA--GTCCA-CA---TTCTTGTTag
gi|16 : ATTTT--CT-GC-CTCCCAT-T-ATTTA-A-CAGGT--A--AGATTA--TAAG-TGTATCCAC--T-C-GCGCGTATTTC-AGAGTTAAATTCATTTG-ATT-C-AGAG
gi|17 : gaaattgcaaagttgaAAGAAATA-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAC-----CA-T-CGG-CT-CT-CGTG--G-ATTAAAAA-A--CGC-CT-AAG-GAT--G-TTTG--AC----C-TT-CGCCGAACTC----------CAAGA-
gi|18 : AAAGAAA---TTG-C-TC--TCT-GCGA-AA-TCTTGTCAAAACAT-----CATT-CGTCCT-CT-CGTT--G-ATTAAAAcaaagtaaa
gi|19 : CAG--TCAACAGAATCCAGTAAAA-T----CGGA-TTCGTCTTCCAGTA-ATGG-AATATTTCTCT
gi|2 : ATCATAAAGAAA-A-TTGGC-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-C--TCG-CT-CGTT--G-ATTAAAA--T--AGCGTT-AAG---T--G-TTTG--ACCT--C-TT-CGCCG---TA----------CA-GA-T----T----C------------AA---CATCTGTT--AGAA-AC---------A--ACGTAGA-GT-GCAA----A-ACA------C-TCGTGA-TCATGTA-T--TG-TAGTGAC-CAGGGAAAGTAAA-CAAATAA----------TTAGT--ATG-C-AAAAGAGATGCAA-TT--CGA-TTAG-CAAA-T--A---AGG-AAAGGAATCTTGGAGGGTGAACGC-T-AGTATC--TGTAT--AAATA-AGAGGTGGT--A-------T----ATCATAATCGTCAGT---GGT-AAACTGGAGGTTATAAATGATTGT--CT-CC-TTC---T-TAATTGA-TACAGGTG-A--GTCTT---TAAG-CGTATCCAA--T-A-TCGCGTATTTT-AAATTTAAA-TTATTTG-ATT-C-AGAGGG-TT-CAGTTAA--TATTT-TA-TTT-GATAG---AATTTTCAG-TTAAT---ATGTTATTTTCAGAAT--TTTATGTAAAAACATTTATGTTGTA---AATGTTTG-TATTTAATTTTAATATTCATTGTT-AATCAATGTT-TATTATTTCCATGTTTATA-TATAATAAAG-AGTGGT-AACTGGAGGTAT----GA-TTGT---CTCCT-TCTTAATTGGATT--A-CAGGA-C-GGGAA------TAAGAACAGGA-CCAC--TCCC-CGTA--C-CTG-TGGGGCAC--TCAACAGAATCCAGTAAAA-T----CGGA-TTCGACTTCCAGTA-AAGGAAATAGTCCTCTTTCA-TA--AGT--G-GATTTTCATTTGCGTTC-TGAC-TTGTTC-TTTTATCAG-CCCTAAAAC-AAATC-TTCATC---AAACTATC---GTAATGA-A---CAC-AAAAC-GAAGTC--ATTAGG-GCTGATAATAAGAAT-TTGTCAGCACTATGAG-TAT-CCACAATTTCGTTGGATTTTCGAGACAATAACA-CCA---ATAGATCAAGTGGTGGAT-CC---GGCCTAACACGAGG-CTAGG--ATATCGTAACACCTCTCACAAGCCAAGGGAGTGC-AG---------------------------TATTTCCCCGTCA-TCAAAATAAACAATTGAAGTACA--A-----------------TATGAAACGTGGTGCTGAGAATTCGG----GG-TTCGTTTCAAATAATGATCTATTAATTCCAAGTACACTACGCTCTGTCCTTCTTTATTTat
gi|20 : TAAACAATCCAAGAACA--GTCCA-CGTTTTT-TTGTTACGAT
gi|3 : ATCATAAAGAAA-A-TTG-C-TC--TGT-A-GA-AA-T--TG------CAT-----CATT-CAGT-T-CT-CGTT--G-ATCAAAAA-T--AGCGCT-AAG-GAT--G-TTTG--ACCC--CCTT-CGCCG---TAAAATACTCCACAATA-T----T----CCAAGACATCAGTAATGCCATCTGTT--AGGA-ACGTCAAAGTTA--ACTTAGA-GT-TCAG----ATACATATGTAC-TCATGA-TCATGTG-C--TT-TAGTGAC-CAGGAAAAGTAAA-CAAATAAATTGAAATAATTAGT--ATG-T-AAGAAAAATGCAT-TT--CGA-TTAT-CAAA-T--A---AGG-TAAGGAATCTTGGAGGGTGAACGC-T-AGT-TC--CGTAT--AAATA-AGAGACGGCAAA-------TTCAAATTATAACCCTCATT---ATT-AAATTGAAGGTTA-----GATTGT--CTGCC-CAA---T-T-ATTGA-AACAGG------------------------------T-A-CCGCGTATTTT-AGTGTTAAATTTAATTG-ATT-C-AGAGGG-TT-CAGTTAA--TATTT-TATTTT-TACAG---AATTTTT------------TGTTATT------AT--TTTATGTAAGAATATTTATGTTGTAAAGAATGTTTG-
gi|3 : atatcatttaacgaaaatcttgaggacaaaattgttttgttaataggggaaatttTTTTTNNNNNTGAACGC-T-AGT-TC--CGTAT--AAATgttttttnnnnntgaacgctagttccgtataaat
gi|4 : atatcatttaacgaaaatcttgaggacaaaattgttttgttaataggggaaatttatcataaagaaaattgctctgtagaaattgcatcattcagttctcgttgatcaaaaatagcgctaaggatgtttgacccccttcgccgtaaaatactccacaatattccaagacatcagtaatgccatctgttaggaacgtcaaagttaacttagagttcagatacatatgtactcatgatcatgtgctttagtgaccaggaaaagtaaacaaataaattgaaataattagtatgtaagaaaaatgcatttcgattatcaaataaggtaaggaatcttggagggtgaacgctagttccgtataaataagagacggcaaattcaaattataaccctcattattaaattgaaggttagattgtctgcccaattattgaaacaggtaccgcgtattttagtgttaaatttaattgattcagagggttcagttaatattttatttttacagaattttttgttattattttatgtaagaatatttatgttgtaaagaatgtttggtATCATAAAGAAA-A-ATG-CCTC--TGT-G-GA-AAAT--TGT--AAACATGCAGGCATT-CGGACTGCTACGTTATG-ATTAAAAA-TTAGGCGTT-AAGCGAT--GATTTG--ACCT--C-TT-CGA-G---TA----------CAAGAAT----T----C------------CA---C-TCTGTT--AGAATGT---------A--ACGTAGA-GTTGCAA----A-ACA------CGTCGTGAATCATGTAGT--TGGTAGTGAC-CAGGGAAAGTAAAACAAATCA----------TTAGCTGATGGCCAAGAGAGAGGTAA-TTGTTGA-TTAGGCAAAAT--A---AGG-AAAGGAATCTTGGGAGGTGAACTC-T-AGTATC--TGTAT--AAATACAGAGGTGGA--AT------T----ATCATAATCGCCAGT---GGT-TAACTGATGGTTATGA-----TGTCACT-CC-TTC---TAA-AGTGATAACAGGT--ATGG--TCCTATAAGCCGTATCTAA--TAA-TCGCATAGTTT-AAATTTAAA-TTATTTGAATT-CGAGAGGGTTT-CAGTAGA--TACTT-TATTTTATA-AGAAAAATTTTCAGTTTAACATAATTTTATTTTC---
gi|5 : attatCATAA-GAAA-A-TTG-T-TCCTTTT-G-GAGAA-T--TGT--AAA-AT-----CATT-CGGCCT-CT-CGTT--GCGTTAAAAACT--AGCGTTTAAG-GAT--G-TTTGCGACCT--C-TTTCGCCG---TA----------CAAGA-T----T----C------------AA---CATCTGTTACACAA-AC---------A--A-GT-GA-GT-GCAA----A-ACA------C-TCGTGA--CATGTA-TTCTG-TATGGACGCAGGGAAAGTAAA-CAAATAAT---------TTAGT---TGGCTAAAAGAGATGCAAGTT--CGA--TAG-CAAA-T--AATCAAG-GAAGGAATCTTGGAGAGTG-ACGCTT-AGTATCTTTGTAT--AATAA-AGAGGTGG---A-------T-----TCATAATCGTCAGT---GGT--AACTGGAGGTTATGA
gi|6 : GA-C-GGGGA------TAAGAACAGGA-C-AC--TCCC-CGTAAAC-CTG-TGGG-CAT--TTA-CAGA--CCAGTAAAAAT----CG-A-TTCGACTTCCAGTA-AAGGAAATAAACCGAGCTAATTA--AGTGTG-GATTTCAA--AGCGTGCTTGAC-TTTTTCTTTTTATCAG-CCCTAAAAC-AA----TT--TC---AAACAACCTTTTTTATG--A---CACAAAAACTGAAGTC--ATTAGGTTCTGATAATAAGAAATTTGCCAGTACGATGAGTTTT-CCAAACTTTCG-TGGATTTTC------ATAACG-Ctt
gi|7 : TTTTTNNNNNTGAACGC-T-AGT-TC--CGTAT--AAATA-AGAGACGGCAAA-------TTCAAATTATAACCCTCATT---ATT-AAATTGAAGGTTA-----GATTGT--CTGTC-CAA---T-T-ATTGA-AACAGG------------------------------T-A-CCGCGTATTTT-AGTGTTAAATTTAATTG-ATT-C-AGATGG-TT-CAGTTAA--TATTT-TATTTT-TACAG---AATTTTCAG-TTAAT-----------------AT--TTTATGTAAGAATATTTATGTTGTAAAGAATGTTTG-
gi|8 : tgttgtaaagaatgtttggt-TGGATATTGGAGACAATACCG-CTAGACATAAA---AGTGGTGGATCCC---GTCCTAATACG--G-ATA-----TATCGTAACACCTCTCAAATACCA--GCAAT-TAAGA---TATTAACGGA-----------AC-ATT--CTCATAA-AC--AACAAACAACAAAATAACATCATATA-TA---TT-TTGTTACGATAAGTAGTGCTGAGAATTCGG----GGTTTCGTTTCAAAgtt
gi|9 : aattggtATCATAAAGAAA-A-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-CGG-CT-CT-CGTT--G-ATTAAAAA-A--AGCGCT-AAG-GAT--G-TTTG--ACCT--C-TT-CGTCG---TAACTC------CAAGA-CAAAGTAA--T------------AA---CATCTGCT--AGAA-AC---------A--ATGTAAACGT--CAAGGTTA-ACT------C-TCATGA-TAATGTA-T--TG-TAGTGAC-CAGGGG----AAA-TAAATAA----------TTAGc
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 11 555555555555555555555555555555555555555 222222222222 2222222222222222222222 1111 3333333333 111 111 11 111111 1 11 66666666666666666 111 11 222222 22222222222222 000000000000000000000000000000 11 11 111 1111 2222222222 1 1 1 1 1 1 333333 1 222 1 1 11 3333 1 1 222222 1 11 1 1111 1 11 222222 333333 1111 1 1 1 1 1 1111 222 11111111 444444 1 11 111 33 1 1 1 1 222 222 11 11 77777777777777777777777777 1 22 3333333333333333 33333 2222 2222 222222
lowQualScore : 555 6 3 44 3 3 3 3 44 555 88888 3 66 3 3 77 3 3 55 3 3 55 3 55 55 3 3 666 888888888888888888888888888888888888888 888 77 5 666666666666 1 6 8888888888888888888888 6 3333 6 6 2 6 5555555555 111 999 8 11 88 8 8 666666 8 0 5 5 9 33 77 6 55555555555555555 2 111 00 888888 99 77777777777777 6 999999999999999999999999999999 888 6 1 7 6 6 6 8 8 11 8 0 33 6 444 0 8 9999 3 1111111111 6666 0 5 5 5 3 3 6 222222 3 333 3 3 88 6666 0 0 888888 0 2 33 0 7777 0 2 11 99 6 555555 8 8 8 3 1 222222 3333 7 6 3 3 3 3 3 8888 6 333 99999999 666666 3 7 7 88 888 7 11 3 3 7 0 33 0 333 7 6 333 1 7 44 2 33 3 3 2 6 11111111111111111111111111 3 3 1 0 00 22 111 5555555555555555 3 55555 8888 7 4444 1 1 999999 1
lowQualScore : ... . . .. . . . . .. ... ..... . .. . . .. . . .. . . .. . .. .. . . ... ....................................... ... .. . ............ . . ...................... . .... . . . . .......... ... ... . .. .. . . ...... . . . . . .. .. . ................. . ... .. ...... .. .............. . .............................. ... . . . . . . . . .. . . .. . ... . . .... . .......... .... . . . . . . . ...... . ... . . .. .... . . ...... . . .. . .... . . .. .. . ...... . . . . . ...... .... . . . . . . . .... . ... ........ ...... . . . .. ... . .. . . . . .. . ... . . ... . . .. . .. . . . . .......................... . . . . .. .. ... ................ . ..... .... . .... . . ...... .
lowQualScore : 888 7 3 66 3 3 3 3 66 888 33333 3 66 3 3 99 3 6 00 6 6 00 6 00 00 6 6 444 000000000000000000000000000000000000000 888 99 7 888888888888 0 7 5555555555555555555555 7 3333 7 7 5 7 8888888888 888 222 0 00 88 0 0 000000 0 3 7 7 0 66 99 7 33333333333333333 5 777 22 111111 22 22222222222222 7 555555555555555555555555555555 333 7 0 3 7 7 7 0 0 00 0 8 66 4 000 8 0 6666 8 9999999999 0000 0 5 5 5 3 3 7 777777 3 333 3 3 33 0000 0 0 888888 0 5 88 0 8888 0 5 00 44 0 888888 8 0 0 8 0 000000 7777 3 7 3 3 3 3 3 0000 7 333 77777777 000000 3 3 3 33 333 3 77 3 3 3 0 22 0 333 3 7 333 0 3 33 5 88 2 2 5 5 88888888888888888888888888 2 2 0 0 55 44 888 6666666666666666 2 00000 3333 3 0000 0 0 000000 0
consensus : ATCATAAAGAAA-A-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-CGGTCT-CT-CGTT--G-ATTAAAAA-T--AGCGCT-AAG-GAT--G-TTTG--ACCT--C-TT-CGCCG---TA----------CAAGA-T----T----C------------AA---CATCTGTT--AGAA-AC---------A--ACGTAGA-GT-GCAA----A-ACA------C-TCGTGA-TCATGTA-T--TG-TAGTGAC-CAGGGAAAGTAAA-CAAATAA----------TTAGT--ATGGC-AAGAGAGATGCAA-TT--CGA-TTAG-CAAA-T--A---AGG-AAAGGAATCTTGGAGGGTGAACGC-T-AGTATC--CGTAT--AAATA-AGAGGCGGC--A-------T----ATCATAACCGTCAGT---GGT-AAACTGGAGGTTATGAATGATTGT--CT-CC-CTC---T-T-ATTGA-AACAGGT--A--G--TT---TAAG-CGTATCCAA--T-A-TCGCGTATTTT-AGANTTAAATTTATTTG-ATT-C-AGAGGG-TT-CAGTTAA--TATTT-TATTTT-TACAG---AATTTTCAG-TTAAT---ATNTTATTTTC---AT--TTTATGTAAGAACATTTATGTTGTAAAGAATGTTTG-TATTTAATTTTAATATTCATTGTTAAATCAATGTTATATTATTTCCATGTTTATATTATAATAAAG-AGTGGT-AACTGGAAGT-T----GA-TTGT---CTCCT-TC-TAATT--ATT--A-CAGGA-C-GGGAA------TAAGAACAGGA-CCAC--TCCC-CGTA--C-CTG-TGGGGCAT--TCAACAGAATCCAGTAAAA-T----CGNA-TTCGACTTCCAGTA-AAGGAAATANTCCTCTTTCA-T-A--AGTGCG-GATTTCCATTTGCGTTCT-GAC-TTGTTCTTTT-ATCAG-CCCTAAAAC-AAATC-TTCATC---AAACTACCTTTTA-ATG--A---CACAAAA-CTGAAGTC--ATTAGG-GCTGATAATAAGAA--TTGTCAGCACGATGAG-TAT-CCACAATTTCG-TGGATTTTCGAGACAATAACG-CCA---ATAGATCAAGTGGTGGATCCC---GNCCTAACACGAGG-NTAGG--ATATCGTAACACCTCTCACAAGCCAAGGGAGTGCGAGA---TA--AAAGAA-----------ACTATTTCCCCGTNA-TC-GAATAAACAATCNAAGAACA--GTNCA-CA---TT-TTGTTACGATA-GTGGTGCTGAGAATTCGG----GGTTTCGTTTCAAATGATGATCTATTAATCNCNAGTACACTACGCTCTGNCCTTCCTCATTT
Reference ( family-511 ) : ATCATAAAGAAA-A-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-CGGTCT-CT-CGTT--G-ATTAAAAA-T--AGCGCT-AAG-GAT--G-TTTG--ACCT--C-TT-CGCCG---TA----------CAAGA-T----T----C------------AA---CATCTGTT--AGAA-AC---------A--ACGTAGA-GT-GCAA----A-ACA------C-TCGTGA-TCATGTA-T--TG-TAGTGAC-CAGGGAAAGTAAA-CAAATAA----------TTAGT--ATGGC-AAGAGAGATGCAA-TT--CGA-TTAG-CAAA-T--A---AGG-AAAGGAATCTTGGAGGGTGAACGC-T-AGTATC--CGTAT--AAATA-AGAGGCGGC--A-------T----ATCATAACCGTCAGT---GGT-AAACTGGAGGTTATGAATGATTGT--CT-CC-CTC---T-T-ATTGA-AACAGGT--A--G--TT---TAAG-CGTATCCAA--T-A-TCGCGTATTTT-AGANTTAAATTTATTTG-ATT-C-AGAGGG-TT-CAGTTAA--TATTT-TATTTT-TACAG---AATTTTCAG-TTAAT---ATNTTATTTTC---AT--TTTATGTAAGAACATTTATGTTGTAAAGAATGTTTG-TATTTAATTTTAATATTCATTGTTAAATCAATGTTATATTATTTCCATGTTTATATTATAATAAAG-AGTGGT-AACTGGAAGT-T----GA-TTGT---CTCCT-TC-TAATT--ATT--A-CAGGA-C-GGGAA------TAAGAACAGGA-CCAC--TCCC-CGTA--C-CTG-TGGGGCAT--TCAACAGAATCCAGTAAAA-T----CGNA-TTCGACTTCCAGTA-AAGGAAATANTCCTCTTTCA-T-A--AGTGCG-GATTTCCATTTGCGTTCT-GAC-TTGTTCTTTT-ATCAG-CCCTAAAAC-AAATC-TTCATC---AAACTACCTTTTA-ATG--A---CACAAAA-CTGAAGTC--ATTAGG-GCTGATAATAAGAA--TTGTCAGCACGATGAG-TAT-CCACAATTTCG-TGGATTTTCGAGACAATAACG-CCA---ATAGATCAAGTGGTGGATCCC---GNCCTAACACGAGG-NTAGG--ATATCGTAACACCTCTCACAAGCCAAGGGAGTGCGAGA---TA--AAAGAA-----------ACTATTTCCCCGTNA-TC-GAATAAACAATCNAAGAACA--GTNCA-CA---TT-TTGTTACGATA-GTGGTGCTGAGAATTCGG----GGTTTCGTTTCAAATGATGATCTATTAATCNCNAGTACACTACGCTCTGNCCTTCCTCATTT
gi|1 : TCATAAAGAAA-AATTG-C-TC--TCT-G-GA-AA-T--TGT--AAACAT-----CATT-CG--CT-CT-CGTTT-G-ATTAAAAA-T--AGC-CT-AAG-GATAAG-TTTG--ACCT--C-TT-CGCCG---CAACT-------CAAGA-CAAAGTAAAAT------------AA---CATCTGTT--AGAA-AC---------ACTGCGTAGA-GT-----------------------------TCA------------AGTGAC-CGGGGAAA-TAAA-CAAATAA----------T-AGT--ATGGC-AAGAAAGATGCAA-TT--CGAATTAG-CAAA-TTTA---CGGTAAAGGAATCTTGGAGG-TGAACGC-TTAGT-TCA-TGTATTAAAATG-AG-GGCT-C--ACTCATCCT----CTCACTACTTCTAGTTCTGGTGAAACTGGACGTAGTGAAT-ATTG---CT-CCTCTCGAAT-G-GTTAA-AACAGGTTTAC-G--TT---TAAT-C----CCAAACT-AATCGCGTATTTTTAAACTTAAATTTATTTG-ATTTC-AGAGGG-TTTCAGTTAAGCTATTCATATTTT--ATAG---AATTTTCAG-TTAAT---ATCTTATTTTC---AGGATTTATGTAAAAACATTTATGTTGTAAAT--TGTTTGATATTTAATTTTAATATTCATTGTTAAATCAATGTTATATTATTTCCATGTTTATATTATAATAAAGAAGTGGT-AA-TGGAAGT-TTTTGAA-TTCTATGCTCCTCTC-TAACT--CTTAAA-CAGGAGCAGGGAAATCAAGTAAGCATGGCAGCCACCTTCCCTCGTA--CACTGTTGGGGCATCACCCACA-ATTCCAGAACAA-TGCGACGCATTTCGACTTCCAGTATAAAGGAATATTTCTCTTACAGT-GATAGTGCGAAATGTCCATTTG-GTTCT-GATGTTGTTCTTTT-ATCAGCCCCTAAAACAAAATCGTTCATTGCAAAACTA--TTTTA-ATGCCACCCCACACCC-CTG-AGTCATATTAGG-G-TGAT-ATAAGAA--TTGTCAGCACGATGAG-TATCCCACAA-TTCG-TGGAGTTTCGGGACAATAACACCCA---ATAGATCAAGTGGTGGATCCCGGGGACCTAACACGAGGTGTAGGATATATCGTAAC-CCTCTCACAAGCCAAGGGAGTGCGAGATTTTA--AAAGAA-----------GCTATTTCCCCGTCA-TC-AAATAAACAATTAA---------TGCACCA---CC-TTCTT-CAAT-----GTGCTGAAAATTCGGTAGAGCTTTCGTATCAAATGATG----ATTAATCACCAGTA------ACTTTGGCTTTTCTCATTT
gi|10 : attattattcataacgataatctgagggacaagattttttgttagtaggggggggggaattatATCATAAAGAAA-A-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-CGG-CT-CT-CGTT--G-ATTAAAAA-T--AGCGTT-AAG-GAT--G-TTTG--ACCT--C-TT-CACCG---TA----------CAAGA-T----TC---C------------AA---CATCTGTT--AGAA-
gi|11 : gctgatatcatttagtttggcgtcttctgtttgataagaagatggcattgatgtcagaggtttATCAATAAGAAA-A-TTGTC-TC--TGT-A-GA-AA-T---------GCAT-----CATTGCAGT-T-CT-CGTT--G-ATCAAAAA-T--AGCGCT-AAG-GAT--G-TTTG--ACCTCCC-TT-CGCCG---TA-----------AATA-C----T----C------------CA---CAca
gi|12 : tcatttaacgaaaatcttgagacataaattgtttttgttattaggggaaattttATCATAAAGAAA---CTG-C-TC--TTTTG-GA-TA-T--TG---AAACAT-----CATT-CAGT-T-CT-CGTT--A-GTTAAAA--T--AGCGTT-ATG-GAT--G-TTTG--ATCT--C-TT-CGTCG---atattccaagacatcaagtaatg
gi|13 : aatcataacaataatcatgaggacaagattttttgttaagtaaggggggggggggtttG-AGTGGTCAACTGGAAGT-T----GAATTGT---CTTCC-TC-CAATT--ATTT-ATCAGGG-C-GGAAA------TAAGAATAGGA-TCAC--TCCC-CGTA--T-CTC-TAAGGCAT--TT-GCAGAATGCAGTAAAA------CGTA-CTCGACTTCCAGTA-AAAGAA
gi|14 : ATCATAAAGAAA-A-TTG-C-TC--TGT-A-GA-AG-T--TGT--AATTAT-----CATT-CAGT-T-CT-CGTT--G-GTTAAAAA-T--AGCGCA-AAT-GAT--G-GTTG--ACCT--C-TT-CGCCG---TA----------taa
gi|15 : atcataacgataatcttgaggacaagatttggggaatttTAGG--ATATCGTAACACCTCTCACAAGCCAAGCGAAAGCGAGA---TA--AAAAAAAAAACAACAACACTATTTCCCCGTGATTC-GAATAAACAATCCAAGAACA--GTCCA-CA---TTCTTGTTag
gi|16 : ATTTT--CT-GC-CTCCCAT-T-ATTTA-A-CAGGT--A--AGATTA--TAAG-TGTATCCAC--T-C-GCGCGTATTTC-AGAGTTAAATTCATTTG-ATT-C-AGAG
gi|17 : gaaattgcaaagttgaAAGAAATA-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAC-----CA-T-CGG-CT-CT-CGTG--G-ATTAAAAA-A--CGC-CT-AAG-GAT--G-TTTG--AC----C-TT-CGCCGAACTC----------CAAGA-
gi|18 : AAAGAAA---TTG-C-TC--TCT-GCGA-AA-TCTTGTCAAAACAT-----CATT-CGTCCT-CT-CGTT--G-ATTAAAAcaaagtaaa
gi|19 : CAG--TCAACAGAATCCAGTAAAA-T----CGGA-TTCGTCTTCCAGTA-ATGG-AATATTTCTCT
gi|2 : ATCATAAAGAAA-A-TTGGC-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-C--TCG-CT-CGTT--G-ATTAAAA--T--AGCGTT-AAG---T--G-TTTG--ACCT--C-TT-CGCCG---TA----------CA-GA-T----T----C------------AA---CATCTGTT--AGAA-AC---------A--ACGTAGA-GT-GCAA----A-ACA------C-TCGTGA-TCATGTA-T--TG-TAGTGAC-CAGGGAAAGTAAA-CAAATAA----------TTAGT--ATG-C-AAAAGAGATGCAA-TT--CGA-TTAG-CAAA-T--A---AGG-AAAGGAATCTTGGAGGGTGAACGC-T-AGTATC--TGTAT--AAATA-AGAGGTGGT--A-------T----ATCATAATCGTCAGT---GGT-AAACTGGAGGTTATAAATGATTGT--CT-CC-TTC---T-TAATTGA-TACAGGTG-A--GTCTT---TAAG-CGTATCCAA--T-A-TCGCGTATTTT-AAATTTAAA-TTATTTG-ATT-C-AGAGGG-TT-CAGTTAA--TATTT-TA-TTT-GATAG---AATTTTCAG-TTAAT---ATGTTATTTTCAGAAT--TTTATGTAAAAACATTTATGTTGTA---AATGTTTG-TATTTAATTTTAATATTCATTGTT-AATCAATGTT-TATTATTTCCATGTTTATA-TATAATAAAG-AGTGGT-AACTGGAGGTAT----GA-TTGT---CTCCT-TCTTAATTGGATT--A-CAGGA-C-GGGAA------TAAGAACAGGA-CCAC--TCCC-CGTA--C-CTG-TGGGGCAC--TCAACAGAATCCAGTAAAA-T----CGGA-TTCGACTTCCAGTA-AAGGAAATAGTCCTCTTTCA-T-A--AGT--G-GATTTTCATTTGCGTTCT-GAC-TTGTTCTTTT-ATCAG-CCCTAAAAC-AAATC-TTCATC---AAACTATC--GTA-ATGA-A---CACAAAA-C-GAAGTC--ATTAGG-GCTGATAATAAGAAT-TTGTCAGCACTATGAG-TAT-CCACAATTTCGTTGGATTTTCGAGACAATAACA-CCA---ATAGATCAAGTGGTGGAT-CC---GGCCTAACACGAGG-CTAGG--ATATCGTAACACCTCTCACAAGCCAAGGGAGTGC-AG---------------------------TATTTCCCCGTCA-TCAAAATAAACAATTGAAGTACA--A-----------------TATGAAACGTGGTGCTGAGAATTCGG----GG-TTCGTTTCAAATAATGATCTATTAATTCCAAGTACACTACGCTCTGTCCTTCTTTATTTat
gi|20 : TAAACAATCCAAGAACA--GTCCA-CGTTTTT-TTGTTACGAT
gi|3 : ATCATAAAGAAA-A-TTG-C-TC--TGT-A-GA-AA-T--TG------CAT-----CATT-CAGT-T-CT-CGTT--G-ATCAAAAA-T--AGCGCT-AAG-GAT--G-TTTG--ACCC--CCTT-CGCCG---TAAAATACTCCACAATA-T----T----CCAAGACATCAGTAATGCCATCTGTT--AGGA-ACGTCAAAGTTA--ACTTAGA-GT-TCAG----ATACATATGTAC-TCATGA-TCATGTG-C--TT-TAGTGAC-CAGGAAAAGTAAA-CAAATAAATTGAAATAATTAGT--ATG-T-AAGAAAAATGCAT-TT--CGA-TTAT-CAAA-T--A---AGG-TAAGGAATCTTGGAGGGTGAACGC-T-AGT-TC--CGTAT--AAATA-AGAGACGGCAAA-------TTCAAATTATAACCCTCATT---ATT-AAATTGAAGGTTA-----GATTGT--CTGCC-CAA---T-T-ATTGA-AACAGG------------------------------T-A-CCGCGTATTTT-AGTGTTAAATTTAATTG-ATT-C-AGAGGG-TT-CAGTTAA--TATTT-TATTTT-TACAG---AATTTTT------------TGTTATT------AT--TTTATGTAAGAATATTTATGTTGTAAAGAATGTTTG-
gi|3 : atatcatttaacgaaaatcttgaggacaaaattgttttgttaataggggaaatttTTTTTNNNNNTGAACGC-T-AGT-TC--CGTAT--AAATgttttttnnnnntgaacgctagttccgtataaat
gi|4 : atatcatttaacgaaaatcttgaggacaaaattgttttgttaataggggaaatttatcataaagaaaattgctctgtagaaattgcatcattcagttctcgttgatcaaaaatagcgctaaggatgtttgacccccttcgccgtaaaatactccacaatattccaagacatcagtaatgccatctgttaggaacgtcaaagttaacttagagttcagatacatatgtactcatgatcatgtgctttagtgaccaggaaaagtaaacaaataaattgaaataattagtatgtaagaaaaatgcatttcgattatcaaataaggtaaggaatcttggagggtgaacgctagttccgtataaataagagacggcaaattcaaattataaccctcattattaaattgaaggttagattgtctgcccaattattgaaacaggtaccgcgtattttagtgttaaatttaattgattcagagggttcagttaatattttatttttacagaattttttgttattattttatgtaagaatatttatgttgtaaagaatgtttggtATCATAAAGAAA-A-ATG-CCTC--TGT-G-GA-AAAT--TGT--AAACATGCAGGCATT-CGGACTGCTACGTTATG-ATTAAAAA-TTAGGCGTT-AAGCGAT--GATTTG--ACCT--C-TT-CGA-G---TA----------CAAGAAT----T----C------------CA---C-TCTGTT--AGAATGT---------A--ACGTAGA-GTTGCAA----A-ACA------CGTCGTGAATCATGTAGT--TGGTAGTGAC-CAGGGAAAGTAAAACAAATCA----------TTAGCTGATGGCCAAGAGAGAGGTAA-TTGTTGA-TTAGGCAAAAT--A---AGG-AAAGGAATCTTGGGAGGTGAACTC-T-AGTATC--TGTAT--AAATACAGAGGTGGA--AT------T----ATCATAATCGCCAGT---GGT-TAACTGATGGTTATGA-----TGTCACT-CC-TTC---TAA-AGTGATAACAGGT--ATGG--TCCTATAAGCCGTATCTAA--TAA-TCGCATAGTTT-AAATTTAAA-TTATTTGAATT-CGAGAGGGTTT-CAGTAGA--TACTT-TATTTTATA-AGAAAAATTTTCAGTTTAACATAATTTTATTTTC---
gi|5 : attatCATAA-GAAA-A-TTG-T-TCCTTTT-G-GAGAA-T--TGT--AAA-AT-----CATT-CGGCCT-CT-CGTT--GCGTTAAAAACT--AGCGTTTAAG-GAT--G-TTTGCGACCT--C-TTTCGCCG---TA----------CAAGA-T----T----C------------AA---CATCTGTTACACAA-AC---------A--A-GT-GA-GT-GCAA----A-ACA------C-TCGTGA--CATGTA-TTCTG-TATGGACGCAGGGAAAGTAAA-CAAATAAT---------TTAGT---TGGCTAAAAGAGATGCAAGTT--CGA--TAG-CAAA-T--AATCAAG-GAAGGAATCTTGGAGAGTG-ACGCTT-AGTATCTTTGTAT--AATAA-AGAGGTGG---A-------T-----TCATAATCGTCAGT---GGT--AACTGGAGGTTATGA
gi|6 : GA-C-GGGGA------TAAGAACAGGA-C-AC--TCCC-CGTAAAC-CTG-TGGG-CAT--TTA-CAGA--CCAGTAAAAAT----CG-A-TTCGACTTCCAGTA-AAGGAAATAAACCGAGCTAA-TTA--AGTGTG-GATTTCAAA--GCGTGCTTGAC-TTTTTCTTTTTATCAG-CCCTAAAAC-AA----TT--TC---AAACAACCTTTTTTATG--A---CACAAAAACTGAAGTC--ATTAGGTTCTGATAATAAGAAATTTGCCAGTACGATGAGTTTT-CCAAACTTTCG-TGGATTTTC------ATAACG-Ctt
gi|7 : TTTTTNNNNNTGAACGC-T-AGT-TC--CGTAT--AAATA-AGAGACGGCAAA-------TTCAAATTATAACCCTCATT---ATT-AAATTGAAGGTTA-----GATTGT--CTGTC-CAA---T-T-ATTGA-AACAGG------------------------------T-A-CCGCGTATTTT-AGTGTTAAATTTAATTG-ATT-C-AGATGG-TT-CAGTTAA--TATTT-TATTTT-TACAG---AATTTTCAG-TTAAT-----------------AT--TTTATGTAAGAATATTTATGTTGTAAAGAATGTTTG-
gi|8 : tgttgtaaagaatgtttggt-TGGATATTGGAGACAATACCG-CTAGACATAAA---AGTGGTGGATCCC---GTCCTAATACG--G-ATA-----TATCGTAACACCTCTCAAATACCA--GCAAT-TAAGA---TATTAACGGA-----------AC-ATT--CTCATAA-AC--AACAAACAACAAAATAACATCATATA-TA---TT-TTGTTACGATAAGTAGTGCTGAGAATTCGG----GGTTTCGTTTCAAAgtt
gi|9 : aattggtATCATAAAGAAA-A-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-CGG-CT-CT-CGTT--G-ATTAAAAA-A--AGCGCT-AAG-GAT--G-TTTG--ACCT--C-TT-CGTCG---TAACTC------CAAGA-CAAAGTAA--T------------AA---CATCTGCT--AGAA-AC---------A--ATGTAAACGT--CAAGGTTA-ACT------C-TCATGA-TAATGTA-T--TG-TAGTGAC-CAGGGG----AAA-TAAATAA----------TTAGc
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 11 555555555555555555555555555555555555555 222222222222 2222222222222222222222 1111 3333333333 111 111 11 111111 1 11 66666666666666666 111 11 222222 22222222222222 000000000000000000000000000000 11 11 111 1111 2222222222 1 1 1 1 1 1 333333 1 222 1 1 11 3333 1 1 222222 1 11 1 1111 1 11 222222 333333 1111 1 1 1 1 1 1111 222 11111111 444444 1 11 111 33 1 1 1 1 222 222 11 11 77777777777777777777777777 1 22 3333333333333333 33333 2222 2222 222222
lowQualScore : 555 6 3 44 3 3 3 3 44 555 88888 3 66 3 3 77 3 3 55 3 3 55 3 55 55 3 3 666 888888888888888888888888888888888888888 888 77 5 666666666666 1 6 8888888888888888888888 6 3333 6 6 2 6 5555555555 111 999 8 11 88 8 8 666666 8 0 5 5 9 33 77 6 55555555555555555 2 111 00 888888 99 77777777777777 6 999999999999999999999999999999 888 6 1 7 6 6 6 8 8 11 8 0 33 6 444 0 8 9999 3 1111111111 6666 0 5 5 5 3 3 6 222222 3 333 3 3 88 6666 0 0 888888 0 2 33 0 7777 0 2 11 99 6 555555 8 8 8 3 1 222222 3333 7 6 3 3 3 3 3 8888 6 333 99999999 666666 3 7 7 88 888 7 11 3 3 7 0 33 0 333 7 6 333 1 7 44 2 33 3 3 2 6 11111111111111111111111111 3 3 1 0 00 22 111 5555555555555555 3 55555 8888 7 4444 1 1 999999 1
lowQualScore : ... . . .. . . . . .. ... ..... . .. . . .. . . .. . . .. . .. .. . . ... ....................................... ... .. . ............ . . ...................... . .... . . . . .......... ... ... . .. .. . . ...... . . . . . .. .. . ................. . ... .. ...... .. .............. . .............................. ... . . . . . . . . .. . . .. . ... . . .... . .......... .... . . . . . . . ...... . ... . . .. .... . . ...... . . .. . .... . . .. .. . ...... . . . . . ...... .... . . . . . . . .... . ... ........ ...... . . . .. ... . .. . . . . .. . ... . . ... . . .. . .. . . . . .......................... . . . . .. .. ... ................ . ..... .... . .... . . ...... .
lowQualScore : 888 7 3 66 3 3 3 3 66 888 33333 3 66 3 3 99 3 6 00 6 6 00 6 00 00 6 6 444 000000000000000000000000000000000000000 888 99 7 888888888888 0 7 5555555555555555555555 7 3333 7 7 5 7 8888888888 888 222 0 00 88 0 0 000000 0 3 7 7 0 66 99 7 33333333333333333 5 777 22 111111 22 22222222222222 7 555555555555555555555555555555 333 7 0 3 7 7 7 0 0 00 0 8 66 4 000 8 0 6666 8 9999999999 0000 0 5 5 5 3 3 7 777777 3 333 3 3 33 0000 0 0 888888 0 5 88 0 8888 0 5 00 44 0 888888 8 0 0 8 0 000000 7777 3 7 3 3 3 3 3 0000 7 333 77777777 000000 3 3 3 33 333 3 77 3 3 3 0 22 0 333 3 7 333 0 3 33 5 88 2 2 5 5 88888888888888888888888888 2 2 0 0 55 44 888 6666666666666666 2 00000 3333 3 0000 0 0 000000 0
consensus : ATCATAAAGAAA-A-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-CGGTCT-CT-CGTT--G-ATTAAAAA-T--AGCGCT-AAG-GAT--G-TTTG--ACCT--C-TT-CGCCG---TA----------CAAGA-T----T----C------------AA---CATCTGTT--AGAA-AC---------A--ACGTAGA-GT-GCAA----A-ACA------C-TCGTGA-TCATGTA-T--TG-TAGTGAC-CAGGGAAAGTAAA-CAAATAA----------TTAGT--ATGGC-AAGAGAGATGCAA-TT--CGA-TTAG-CAAA-T--A---AGG-AAAGGAATCTTGGAGGGTGAACGC-T-AGTATC--CGTAT--AAATA-AGAGGCGGC--A-------T----ATCATAACCGTCAGT---GGT-AAACTGGAGGTTATGAATGATTGT--CT-CC-CTC---T-T-ATTGA-AACAGGT--A--G--TT---TAAG-CGTATCCAA--T-A-TCGCGTATTTT-AGANTTAAATTTATTTG-ATT-C-AGAGGG-TT-CAGTTAA--TATTT-TATTTT-TACAG---AATTTTCAG-TTAAT---ATNTTATTTTC---AT--TTTATGTAAGAACATTTATGTTGTAAAGAATGTTTG-TATTTAATTTTAATATTCATTGTTAAATCAATGTTATATTATTTCCATGTTTATATTATAATAAAG-AGTGGT-AACTGGAAGT-T----GA-TTGT---CTCCT-TC-TAATT--ATT--A-CAGGA-C-GGGAA------TAAGAACAGGA-CCAC--TCCC-CGTA--C-CTG-TGGGGCAT--TCAACAGAATCCAGTAAAA-T----CGNA-TTCGACTTCCAGTA-AAGGAAATANTCCTCTTTCA-T-A--AGTGCG-GATTTCCATTTGCGTTCT-GAC-TTGTTCTTTT-ATCAG-CCCTAAAAC-AAATC-TTCATC---AAACTACCTTTTA-ATG--A---CACAAAA-CTGAAGTC--ATTAGG-GCTGATAATAAGAA--TTGTCAGCACGATGAG-TAT-CCACAATTTCG-TGGATTTTCGAGACAATAACG-CCA---ATAGATCAAGTGGTGGATCCC---GNCCTAACACGAGG-NTAGG--ATATCGTAACACCTCTCACAAGCCAAGGGAGTGCGAGA---TA--AAAGAA-----------ACTATTTCCCCGTNA-TC-GAATAAACAATCNAAGAACA--GTNCA-CA---TT-TTGTTACGATA-GTGGTGCTGAGAATTCGG----GGTTTCGTTTCAAATGATGATCTATTAATCNCNAGTACACTACGCTCTGNCCTTCCTCATTT
Reference ( family-511 ) : ATCATAAAGAAA-A-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-CGGTCT-CT-CGTT--G-ATTAAAAA-T--AGCGCT-AAG-GAT--G-TTTG--ACCT--C-TT-CGCCG---TA----------CAAGA-T----T----C------------AA---CATCTGTT--AGAA-AC---------A--ACGTAGA-GT-GCAA----A-ACA------C-TCGTGA-TCATGTA-T--TG-TAGTGAC-CAGGGAAAGTAAA-CAAATAA----------TTAGT--ATGGC-AAGAGAGATGCAA-TT--CGA-TTAG-CAAA-T--A---AGG-AAAGGAATCTTGGAGGGTGAACGC-T-AGTATC--CGTAT--AAATA-AGAGGCGGC--A-------T----ATCATAACCGTCAGT---GGT-AAACTGGAGGTTATGAATGATTGT--CT-CC-CTC---T-T-ATTGA-AACAGGT--A--G--TT---TAAG-CGTATCCAA--T-A-TCGCGTATTTT-AGANTTAAATTTATTTG-ATT-C-AGAGGG-TT-CAGTTAA--TATTT-TATTTT-TACAG---AATTTTCAG-TTAAT---ATNTTATTTTC---AT--TTTATGTAAGAACATTTATGTTGTAAAGAATGTTTG-TATTTAATTTTAATATTCATTGTTAAATCAATGTTATATTATTTCCATGTTTATATTATAATAAAG-AGTGGT-AACTGGAAGT-T----GA-TTGT---CTCCT-TC-TAATT--ATT--A-CAGGA-C-GGGAA------TAAGAACAGGA-CCAC--TCCC-CGTA--C-CTG-TGGGGCAT--TCAACAGAATCCAGTAAAA-T----CGNA-TTCGACTTCCAGTA-AAGGAAATANTCCTCTTTCA-T-A--AGTGCG-GATTTCCATTTGCGTTCT-GAC-TTGTTCTTTT-ATCAG-CCCTAAAAC-AAATC-TTCATC---AAACTACCTTTTA-ATG--A---CACAAAA-CTGAAGTC--ATTAGG-GCTGATAATAAGAA--TTGTCAGCACGATGAG-TAT-CCACAATTTCG-TGGATTTTCGAGACAATAACG-CCA---ATAGATCAAGTGGTGGATCCC---GNCCTAACACGAGG-NTAGG--ATATCGTAACACCTCTCACAAGCCAAGGGAGTGCGAGA---TA--AAAGAA-----------ACTATTTCCCCGTNA-TC-GAATAAACAATCNAAGAACA--GTNCA-CA---TT-TTGTTACGATA-GTGGTGCTGAGAATTCGG----GGTTTCGTTTCAAATGATGATCTATTAATCNCNAGTACACTACGCTCTGNCCTTCCTCATTT
gi|1 : TCATAAAGAAA-AATTG-C-TC--TCT-G-GA-AA-T--TGT--AAACAT-----CATT-CG--CT-CT-CGTTT-G-ATTAAAAA-T--AGC-CT-AAG-GATAAG-TTTG--ACCT--C-TT-CGCCG---CAACT-------CAAGA-CAAAGTAAAAT------------AA---CATCTGTT--AGAA-AC---------ACTGCGTAGA-GT-----------------------------TCA------------AGTGAC-CGGGGAAA-TAAA-CAAATAA----------T-AGT--ATGGC-AAGAAAGATGCAA-TT--CGAATTAG-CAAA-TTTA---CGGTAAAGGAATCTTGGAGG-TGAACGC-TTAGT-TCA-TGTATTAAAATG-AG-GGCT-C--ACTCATCCT----CTCACTACTTCTAGTTCTGGTGAAACTGGACGTAGTGAAT-ATTG---CT-CCTCTCGAAT-G-GTTAA-AACAGGTTTAC-G--TT---TAAT-C----CCAAACT-AATCGCGTATTTTTAAACTTAAATTTATTTG-ATTTC-AGAGGG-TTTCAGTTAAGCTATTCATATTTT--ATAG---AATTTTCAG-TTAAT---ATCTTATTTTC---AGGATTTATGTAAAAACATTTATGTTGTAAAT--TGTTTGATATTTAATTTTAATATTCATTGTTAAATCAATGTTATATTATTTCCATGTTTATATTATAATAAAGAAGTGGT-AA-TGGAAGT-TTTTGAA-TTCTATGCTCCTCTC-TAACT--CTTAAA-CAGGAGCAGGGAAATCAAGTAAGCATGGCAGCCACCTTCCCTCGTA--CACTGTTGGGGCATCACCCACA-ATTCCAGAACAA-TGCGACGCATTTCGACTTCCAGTATAAAGGAATATTTCTCTTACAGT-GATAGTGCGAAATGTCCATTTG-GTTCT-GATGTTGTTCTTTT-ATCAGCCCCTAAAACAAAATCGTTCATTGCAAAACTA--TTTTA-ATGCCACCCCACACCC-CTG-AGTCATATTAGG-G-TGAT-ATAAGAA--TTGTCAGCACGATGAG-TATCCCACAA-TTCG-TGGAGTTTCGGGACAATAACACCCA---ATAGATCAAGTGGTGGATCCCGGGGACCTAACACGAGGTGTAGGATATATCGTAAC-CCTCTCACAAGCCAAGGGAGTGCGAGATTTTA--AAAGAA-----------GCTATTTCCCCGTCA-TC-AAATAAACAATTAA---------TGCACCA---CC-TTCTT-CAAT-----GTGCTGAAAATTCGGTAGAGCTTTCGTATCAAATGATG----ATTAATCACCAGTA------ACTTTGGCTTTTCTCATTT
gi|10 : attattattcataacgataatctgagggacaagattttttgttagtaggggggggggaattatATCATAAAGAAA-A-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-CGG-CT-CT-CGTT--G-ATTAAAAA-T--AGCGTT-AAG-GAT--G-TTTG--ACCT--C-TT-CACCG---TA----------CAAGA-T----TC---C------------AA---CATCTGTT--AGAA-
gi|11 : gctgatatcatttagtttggcgtcttctgtttgataagaagatggcattgatgtcagaggtttATCAATAAGAAA-A-TTGTC-TC--TGT-A-GA-AA-T---------GCAT-----CATTGCAGT-T-CT-CGTT--G-ATCAAAAA-T--AGCGCT-AAG-GAT--G-TTTG--ACCTCCC-TT-CGCCG---TA-----------AATA-C----T----C------------CA---CAca
gi|12 : tcatttaacgaaaatcttgagacataaattgtttttgttattaggggaaattttATCATAAAGAAA---CTG-C-TC--TTTTG-GA-TA-T--TG---AAACAT-----CATT-CAGT-T-CT-CGTT--A-GTTAAAA--T--AGCGTT-ATG-GAT--G-TTTG--ATCT--C-TT-CGTCG---atattccaagacatcaagtaatg
gi|13 : aatcataacaataatcatgaggacaagattttttgttaagtaaggggggggggggtttG-AGTGGTCAACTGGAAGT-T----GAATTGT---CTTCC-TC-CAATT--ATTT-ATCAGGG-C-GGAAA------TAAGAATAGGA-TCAC--TCCC-CGTA--T-CTC-TAAGGCAT--TT-GCAGAATGCAGTAAAA------CGTA-CTCGACTTCCAGTA-AAAGAA
gi|14 : ATCATAAAGAAA-A-TTG-C-TC--TGT-A-GA-AG-T--TGT--AATTAT-----CATT-CAGT-T-CT-CGTT--G-GTTAAAAA-T--AGCGCA-AAT-GAT--G-GTTG--ACCT--C-TT-CGCCG---TA----------taa
gi|15 : atcataacgataatcttgaggacaagatttggggaatttTAGG--ATATCGTAACACCTCTCACAAGCCAAGCGAAAGCGAGA---TA--AAAAAAAAAACAACAACACTATTTCCCCGTGATTC-GAATAAACAATCCAAGAACA--GTCCA-CA---TTCTTGTTag
gi|16 : ATTTT--CT-GC-CTCCCAT-T-ATTTA-A-CAGGT--A--AGATTA--TAAG-TGTATCCAC--T-C-GCGCGTATTTC-AGAGTTAAATTCATTTG-ATT-C-AGAG
gi|17 : gaaattgcaaagttgaAAGAAATA-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAC-----CA-T-CGG-CT-CT-CGTG--G-ATTAAAAA-A--CGC-CT-AAG-GAT--G-TTTG--AC----C-TT-CGCCGAACTC----------CAAGA-
gi|18 : AAAGAAA---TTG-C-TC--TCT-GCGA-AA-TCTTGTCAAAACAT-----CATT-CGTCCT-CT-CGTT--G-ATTAAAAcaaagtaaa
gi|19 : CAG--TCAACAGAATCCAGTAAAA-T----CGGA-TTCGTCTTCCAGTA-ATGG-AATATTTCTCT
gi|2 : ATCATAAAGAAA-A-TTGGC-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-C--TCG-CT-CGTT--G-ATTAAAA--T--AGCGTT-AAG---T--G-TTTG--ACCT--C-TT-CGCCG---TA----------CA-GA-T----T----C------------AA---CATCTGTT--AGAA-AC---------A--ACGTAGA-GT-GCAA----A-ACA------C-TCGTGA-TCATGTA-T--TG-TAGTGAC-CAGGGAAAGTAAA-CAAATAA----------TTAGT--ATG-C-AAAAGAGATGCAA-TT--CGA-TTAG-CAAA-T--A---AGG-AAAGGAATCTTGGAGGGTGAACGC-T-AGTATC--TGTAT--AAATA-AGAGGTGGT--A-------T----ATCATAATCGTCAGT---GGT-AAACTGGAGGTTATAAATGATTGT--CT-CC-TTC---T-TAATTGA-TACAGGTG-A--GTCTT---TAAG-CGTATCCAA--T-A-TCGCGTATTTT-AAATTTAAA-TTATTTG-ATT-C-AGAGGG-TT-CAGTTAA--TATTT-TA-TTT-GATAG---AATTTTCAG-TTAAT---ATGTTATTTTCAGAAT--TTTATGTAAAAACATTTATGTTGTA---AATGTTTG-TATTTAATTTTAATATTCATTGTT-AATCAATGTT-TATTATTTCCATGTTTATA-TATAATAAAG-AGTGGT-AACTGGAGGTAT----GA-TTGT---CTCCT-TCTTAATTGGATT--A-CAGGA-C-GGGAA------TAAGAACAGGA-CCAC--TCCC-CGTA--C-CTG-TGGGGCAC--TCAACAGAATCCAGTAAAA-T----CGGA-TTCGACTTCCAGTA-AAGGAAATAGTCCTCTTTCA-T-A--AGT--G-GATTTTCATTTGCGTTCT-GAC-TTGTTCTTTT-ATCAG-CCCTAAAAC-AAATC-TTCATC---AAACTATC--GTA-ATGA-A---CACAAAA-C-GAAGTC--ATTAGG-GCTGATAATAAGAAT-TTGTCAGCACTATGAG-TAT-CCACAATTTCGTTGGATTTTCGAGACAATAACA-CCA---ATAGATCAAGTGGTGGAT-CC---GGCCTAACACGAGG-CTAGG--ATATCGTAACACCTCTCACAAGCCAAGGGAGTGC-AG---------------------------TATTTCCCCGTCA-TCAAAATAAACAATTGAAGTACA--A-----------------TATGAAACGTGGTGCTGAGAATTCGG----GG-TTCGTTTCAAATAATGATCTATTAATTCCAAGTACACTACGCTCTGTCCTTCTTTATTTat
gi|20 : TAAACAATCCAAGAACA--GTCCA-CGTTTTT-TTGTTACGAT
gi|3 : ATCATAAAGAAA-A-TTG-C-TC--TGT-A-GA-AA-T--TG------CAT-----CATT-CAGT-T-CT-CGTT--G-ATCAAAAA-T--AGCGCT-AAG-GAT--G-TTTG--ACCC--CCTT-CGCCG---TAAAATACTCCACAATA-T----T----CCAAGACATCAGTAATGCCATCTGTT--AGGA-ACGTCAAAGTTA--ACTTAGA-GT-TCAG----ATACATATGTAC-TCATGA-TCATGTG-C--TT-TAGTGAC-CAGGAAAAGTAAA-CAAATAAATTGAAATAATTAGT--ATG-T-AAGAAAAATGCAT-TT--CGA-TTAT-CAAA-T--A---AGG-TAAGGAATCTTGGAGGGTGAACGC-T-AGT-TC--CGTAT--AAATA-AGAGACGGCAAA-------TTCAAATTATAACCCTCATT---ATT-AAATTGAAGGTTA-----GATTGT--CTGCC-CAA---T-T-ATTGA-AACAGG------------------------------T-A-CCGCGTATTTT-AGTGTTAAATTTAATTG-ATT-C-AGAGGG-TT-CAGTTAA--TATTT-TATTTT-TACAG---AATTTTT------------TGTTATT------AT--TTTATGTAAGAATATTTATGTTGTAAAGAATGTTTG-
gi|3 : atatcatttaacgaaaatcttgaggacaaaattgttttgttaataggggaaatttTTTTTNNNNNTGAACGC-T-AGT-TC--CGTAT--AAATgttttttnnnnntgaacgctagttccgtataaat
gi|4 : atatcatttaacgaaaatcttgaggacaaaattgttttgttaataggggaaatttatcataaagaaaattgctctgtagaaattgcatcattcagttctcgttgatcaaaaatagcgctaaggatgtttgacccccttcgccgtaaaatactccacaatattccaagacatcagtaatgccatctgttaggaacgtcaaagttaacttagagttcagatacatatgtactcatgatcatgtgctttagtgaccaggaaaagtaaacaaataaattgaaataattagtatgtaagaaaaatgcatttcgattatcaaataaggtaaggaatcttggagggtgaacgctagttccgtataaataagagacggcaaattcaaattataaccctcattattaaattgaaggttagattgtctgcccaattattgaaacaggtaccgcgtattttagtgttaaatttaattgattcagagggttcagttaatattttatttttacagaattttttgttattattttatgtaagaatatttatgttgtaaagaatgtttggtATCATAAAGAAA-A-ATG-CCTC--TGT-G-GA-AAAT--TGT--AAACATGCAGGCATT-CGGACTGCTACGTTATG-ATTAAAAA-TTAGGCGTT-AAGCGAT--GATTTG--ACCT--C-TT-CGA-G---TA----------CAAGAAT----T----C------------CA---C-TCTGTT--AGAATGT---------A--ACGTAGA-GTTGCAA----A-ACA------CGTCGTGAATCATGTAGT--TGGTAGTGAC-CAGGGAAAGTAAAACAAATCA----------TTAGCTGATGGCCAAGAGAGAGGTAA-TTGTTGA-TTAGGCAAAAT--A---AGG-AAAGGAATCTTGGGAGGTGAACTC-T-AGTATC--TGTAT--AAATACAGAGGTGGA--AT------T----ATCATAATCGCCAGT---GGT-TAACTGATGGTTATGA-----TGTCACT-CC-TTC---TAA-AGTGATAACAGGT--ATGG--TCCTATAAGCCGTATCTAA--TAA-TCGCATAGTTT-AAATTTAAA-TTATTTGAATT-CGAGAGGGTTT-CAGTAGA--TACTT-TATTTTATA-AGAAAAATTTTCAGTTTAACATAATTTTATTTTC---
gi|5 : attatCATAA-GAAA-A-TTG-T-TCCTTTT-G-GAGAA-T--TGT--AAA-AT-----CATT-CGGCCT-CT-CGTT--GCGTTAAAAACT--AGCGTTTAAG-GAT--G-TTTGCGACCT--C-TTTCGCCG---TA----------CAAGA-T----T----C------------AA---CATCTGTTACACAA-AC---------A--A-GT-GA-GT-GCAA----A-ACA------C-TCGTGA--CATGTA-TTCTG-TATGGACGCAGGGAAAGTAAA-CAAATAAT---------TTAGT---TGGCTAAAAGAGATGCAAGTT--CGA--TAG-CAAA-T--AATCAAG-GAAGGAATCTTGGAGAGTG-ACGCTT-AGTATCTTTGTAT--AATAA-AGAGGTGG---A-------T-----TCATAATCGTCAGT---GGT--AACTGGAGGTTATGA
gi|6 : GA-C-GGGGA------TAAGAACAGGA-C-AC--TCCC-CGTAAAC-CTG-TGGG-CAT--TTA-CAGA--CCAGTAAAAAT----CG-A-TTCGACTTCCAGTA-AAGGAAATAAACCGAGCTAA-TTA--AGTGTG-GATTTCAAA--GCGTGCTTGAC-TTTTTCTTTTTATCAG-CCCTAAAAC-AA----TT--TC---AAACAACCTTTTTTATG--A---CACAAAAACTGAAGTC--ATTAGGTTCTGATAATAAGAAATTTGCCAGTACGATGAGTTTT-CCAAACTTTCG-TGGATTTTC------ATAACG-Ctt
gi|7 : TTTTTNNNNNTGAACGC-T-AGT-TC--CGTAT--AAATA-AGAGACGGCAAA-------TTCAAATTATAACCCTCATT---ATT-AAATTGAAGGTTA-----GATTGT--CTGTC-CAA---T-T-ATTGA-AACAGG------------------------------T-A-CCGCGTATTTT-AGTGTTAAATTTAATTG-ATT-C-AGATGG-TT-CAGTTAA--TATTT-TATTTT-TACAG---AATTTTCAG-TTAAT-----------------AT--TTTATGTAAGAATATTTATGTTGTAAAGAATGTTTG-
gi|8 : tgttgtaaagaatgtttggt-TGGATATTGGAGACAATACCG-CTAGACATAAA---AGTGGTGGATCCC---GTCCTAATACG--G-ATA-----TATCGTAACACCTCTCAAATACCA--GCAAT-TAAGA---TATTAACGGA-----------AC-ATT--CTCATAA-AC--AACAAACAACAAAATAACATCATATA-TA---TT-TTGTTACGATAAGTAGTGCTGAGAATTCGG----GGTTTCGTTTCAAAgtt
gi|9 : aattggtATCATAAAGAAA-A-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-CGG-CT-CT-CGTT--G-ATTAAAAA-A--AGCGCT-AAG-GAT--G-TTTG--ACCT--C-TT-CGTCG---TAACTC------CAAGA-CAAAGTAA--T------------AA---CATCTGCT--AGAA-AC---------A--ATGTAAACGT--CAAGGTTA-ACT------C-TCATGA-TAATGTA-T--TG-TAGTGAC-CAGGGG----AAA-TAAATAA----------TTAGc
blockSeqs : TA T C CT T C G A CT TCA GCAGG G CC G A AT C C TA T C . A CG CC C T AAC AAATACTCCACAATATTCCAAGACATCAGT TGC AC T GTCAAAGTTA C C TCAGATACATATGTAC A TTC G G G A ATTGAAATAA TGA GCC G GT T G A AATC . T . A TT . C CAAATTCAAA G . A TAAATG CA GCCTCCCATT T TATGGTCCTATAAGCCGTATCTAA AA . G T A . G T . . . AT T AAA T ATAA G TTCAGAAT AAGA . . . . . C C AT A . . T GG TAT . . . . C . . AAC . G . AA A AT T . . A T TTA GTG T C T . T . . ATC C . CCTTTTTT AA A T A . TTC A AT T . T T GA . GAC T C . G A C G . A A G G ATAAAAAAAAAAACAACAACA T T G T AA CC AGA GTCCACGTTTTT A ACGTG . T ATCT C A CACTAC T
blockSeqs : A G . . . . . . . T . . TC . . . . . . . . . . . . . . . ACTCCAAGACAAAGTAAT . . . A C . CAAGGTTAACTC . GT . . G . T A GCT . . T . . A . . . A . . . CAAATTCAAA C . A TGA . CCTTCTTA . TAAGATTATAAGTGTATCCAC C . T T . . . . . . . G C . . A G AT AAGA . . . C T . . . . . A . . . . C . . T . G . AA A T G . . A G TA G . C . . . . . . . . TCGTA A . . A . GC A T . . T . GA . . . . . T . A G . A A G A ATATTAACGGAA T T C . G TG AGT TCATATATATT A AAGTA . .
blockSeqs : A . . . . . . . . T . . AC . . . . . . . . . . . . . . . CAAGATTCC . . . A C . TGCAAAACACG . T . . G . . A C . . T . . A . . . A . . . AATTA G . T G . GCCCAATT . TGAGTCTTTAAGCGTATCCAA A . G T . . . . . . . T C . . . T AT A . . . . . . . . C . . . G A T G . . A A . . . . . A . . . . . . A . . CC AGA GTCCACATTC A
blockSeqs : A . . . . . . . . T . . CC . . . . . . . . . . . . . . . CAAGAATTC . . . A T . GCAAAACAC . C . . G . . . T . . . . . A . . . . . . . TATA G . A G . CCTTCTAA . . A . T . . . . . . . . T . . . . . . A . . . . . . AA ATA A
blockSeqs : A . . . . . . . . T . . C . . . . . . . . . . . . . . . CAAGATTC . . . A . . GCAAAACAC . T . . . . . . . . . . . AT C . . . GTCCAATT . . A . G . . . .
blockSeqs : A . . . . . . . . T . . T . . . . . . . . . . . . . . . AATACTC . . . . . . . .
blockSeqs : A . . . . . . . . T . . T . . . . . . . . . . . . . . . CAGATTC .
blockSeqs : A . . . . . . . . T . . T . . . . . . . . . . . . . . .
blockSeqs : A . . . . . . . . . . . C . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . T . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . C . . . .
blockSeqCons : A** ** ** CAAGATTC******************************* A*********** GCAAAACAC************* T*** C** T* A***** ** ** CAAATTA********** *** A* TGG*** NCCCNNTN****** TAGGCCTAAGCGTATCCA************ A** ** T* A*** ** T***** AGA GCCACGTTT*******
originalCons : ATCATAAAGAAA-A-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-CGGTCT-CT-CGTT--G-ATTAAAAA-T--AGCGCT-AAG-GAT--G-TTTG--ACCT--C-TT-CGCCG---TA----------CAAGA-T----T----C------------AA---CATCTGTT--AGAA-AC---------A--ACGTAGA-GT-GCAA----A-ACA------C-TCGTGA-TCATGTA-T--TG-TAGTGAC-CAGGGAAAGTAAA-CAAATAA----------TTAGT--ATGGC-AAGAGAGATGCAA-TT--CGA-TTAG-CAAA-T--A---AGG-AAAGGAATCTTGGAGGGTGAACGC-T-AGTATC--CGTAT--AAATA-AGAGGCGGC--A-------T----ATCATAACCGTCAGT---GGT-AAACTGGAGGTTATGAATGATTGT--CT-CC-CTC---T-T-ATTGA-AACAGGT--A--G--TT---TAAG-CGTATCCAA--T-A-TCGCGTATTTT-AGANTTAAATTTATTTG-ATT-C-AGAGGG-TT-CAGTTAA--TATTT-TATTTT-TACAG---AATTTTCAG-TTAAT---ATNTTATTTTC---AT--TTTATGTAAGAACATTTATGTTGTAAAGAATGTTTG-TATTTAATTTTAATATTCATTGTTAAATCAATGTTATATTATTTCCATGTTTATATTATAATAAAG-AGTGGT-AACTGGAAGT-T----GA-TTGT---CTCCT-TC-TAATT--ATT--A-CAGGA-C-GGGAA------TAAGAACAGGA-CCAC--TCCC-CGTA--C-CTG-TGGGGCAT--TCAACAGAATCCAGTAAAA-T----CGNA-TTCGACTTCCAGTA-AAGGAAATANTCCTCTTTCA-T-A--AGTGCG-GATTTCCATTTGCGTTCT-GAC-TTGTTCTTTT-ATCAG-CCCTAAAAC-AAATC-TTCATC---AAACTACCTTTTA-ATG--A---CACAAAA-CTGAAGTC--ATTAGG-GCTGATAATAAGAA--TTGTCAGCACGATGAG-TAT-CCACAATTTCG-TGGATTTTCGAGACAATAACG-CCA---ATAGATCAAGTGGTGGATCCC---GNCCTAACACGAGG-NTAGG--ATATCGTAACACCTCTCACAAGCCAAGGGAGTGCGAGA---TA--AAAGAA-----------ACTATTTCCCCGTNA-TC-GAATAAACAATCNAAGAACA--GTNCA-CA---TT-TTGTTACGATA-GTGGTGCTGAGAATTCGG----GGTTTCGTTTCAAATGATGATCTATTAATCNCNAGTACACTACGCTCTGNCCTTCCTCATTT
finalCons : ATCATAAAGAAAA--TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-CGGTCT-CT-CGTT--G-ATTAAAAA-T--AGCGCT-AAG-GAT--G-TTTG--ACCT--C-TT-CGCCG---TACAAGATTC-------------------------------AA---CATCTGTT--AGAA-ACA-----------ACGTAGA-GTGCAAAACAC-------------TCGTGA-TCATGTAT---TG-TAGTGAC-CAGGGAAAGTAAA-CAAATAA----------TTAGT--ATGC--AAGAGAGATGCAA-TT--CGAT-TAG-CAAA-TA-----AGG-AAAGGAATCTTGGAGGGTGAACGC-T-AGTATC--CGTAT--AAATA-AGAGGCGGCAAATTA----------TCATAACCGTCAGT---GGTA-AACTGGAGGTTATGG---ATTGT--CTNCCCNNTN------ATTGA-AACAGGTAGGCCTAAGCGTATCCA------------TA--TCGCGTATTTT-AGANTTAAATTTATTTG-ATT-C-AGAGGG-TT-CAGTTAA--TATTT-TATTTTT-ACAG---AATTTTCAG-TTAATA---TNTTATTTTC---AT--TTTATGTAAGAACATTTATGTTGTAAAGAATGTTTG-TATTTAATTTTAATATTCATTGTTAAATCAATGTTATATTATTTCCATGTTTATATTATAATAAAG-AGTGGT-AACTGGAAGT-T----GA-TTGT---CTCCT-TC-TAATT--ATT--A-CAGGA-C-GGGAA------TAAGAACAGGA-CCAC--TCCC-CGTA--C-CTG-TGGGGCAT--TCAACAGAATCCAGTAAAAT-----CGNA-TTCGACTTCCAGTA-AAGGAAATANTCCTCTTTCA-T-A--AGTGCG-GATTTCCATTTGCGTTCT-GAC-TTGTTCTTTT-ATCAG-CCCTAAAAC-AAATC-TTCATC---AAACTACCTTTTA-ATG--A---CACAAAA-CTGAAGTC--ATTAGG-GCTGATAATAAGAA--TTGTCAGCACGATGAG-TAT-CCACAATTTCG-TGGATTTTCGAGACAATAACG-CCA---ATAGATCAAGTGGTGGATCCC---GNCCTAACACGAGG-NTAGG--ATATCGTAACACCTCTCACAAGCCAAGGGAGTGCGAGA---TA--AAAGAA-----------ACTATTTCCCCGTNA-TC-GAATAAACAATCNAAGAACAGCCACGTTT-------TTGTTACGATA-GTGGTGCTGAGAATTCGG----GGTTTCGTTTCAAATGATGATCTATTAATCNCNAGTACACTACGCTCTGNCCTTCCTCATTT
Alignments
lowQualScore : 1111111111111111111111111111111
lowQualScore : 11 555555555555555555555555555555555555555 222222222222 2222222222222222222222 1111 2222222222 11 2222 11 111111 1 11 44444444444 111 222222 111111 2222222222222222222222222222222 11 11 111 1111 2222222222 1 1 1 1 1 1 333333 1 222 1 1 11 3333 1 1 222222 1 11 1 1111 1 11 222222 33333 1111 1 1 1 1 1 1111 222 3333 444444 1 11 111 33 1 1 1 1 222 222 11 11 77777777777777777777777777 1 22 4444444444444 33333 2222 2222 222222
lowQualScore : 555 6 3 44 3 3 3 3 44 555 88888 3 66 3 3 77 3 3 55 3 3 55 3 55 55 3 3 666 888888888888888888888888888888888888888 888 77 5 666666666666 1 6 8888888888888888888888 6 3333 6 6 2 6 9999999999 6 11 0000 8 11 88 8 8 666666 8 0 5 5 9 33 77 6 0 11111111111 2 111 77 5 555555 77 6 6 1 333333 77 6 7777777777777777777777777777777 888 6 1 7 6 6 6 8 8 11 8 0 33 6 444 0 8 9999 3 1111111111 6666 0 5 5 5 3 3 6 222222 3 333 3 3 88 6666 0 0 888888 0 2 33 0 7777 0 2 11 99 6 555555 8 8 8 3 1 22222 3333 7 6 3 3 3 3 3 8888 6 333 1111 666666 3 7 7 88 888 7 11 3 3 7 0 33 0 333 7 6 333 1 7 44 2 33 3 3 2 6 11111111111111111111111111 3 3 1 0 00 22 6 8888888888888 1 55 55555 8888 7 4444 1 1 999999 1
lowQualScore : ... . . .. . . . . .. ... ..... . .. . . .. . . .. . . .. . .. .. . . ... ....................................... ... .. . ............ . . ...................... . .... . . . . .......... . .. .... . .. .. . . ...... . . . . . .. .. . . ........... . ... .. . ...... .. . . . ...... .. . ............................... ... . . . . . . . . .. . . .. . ... . . .... . .......... .... . . . . . . . ...... . ... . . .. .... . . ...... . . .. . .... . . .. .. . ...... . . . . . ..... .... . . . . . . . .... . ... .... ...... . . . .. ... . .. . . . . .. . ... . . ... . . .. . .. . . . . .......................... . . . . .. .. . ............. . .. ..... .... . .... . . ...... .
lowQualScore : 888 7 3 66 3 3 3 3 66 888 33333 3 66 3 3 99 3 6 00 6 6 00 6 00 00 6 6 444 000000000000000000000000000000000000000 888 99 7 888888888888 0 7 5555555555555555555555 7 3333 7 7 5 7 2222222222 7 00 2222 0 00 88 0 0 000000 0 3 7 7 0 66 99 7 7 55555555555 5 777 44 7 111111 99 7 7 0 222222 77 7 8888888888888888888888888888888 333 7 0 3 7 7 7 0 0 00 0 8 66 4 000 8 0 6666 8 9999999999 0000 0 5 5 5 3 3 7 777777 3 333 3 3 33 0000 0 0 888888 0 5 88 0 8888 0 5 00 44 0 888888 8 0 0 8 0 00000 7777 3 7 3 3 3 3 3 0000 7 333 0000 000000 3 3 3 33 333 3 77 3 3 3 0 22 0 333 3 7 333 0 3 33 5 88 2 2 5 5 88888888888888888888888888 2 2 0 0 55 44 0 6666666666666 8 66 00000 3333 3 0000 0 0 000000 0
consensus : ATCATAAAGAAA-A-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-CGGTCT-CT-CGTT--G-ATTAAAAA-T--AGCGCT-AAG-GAT--G-TTTG--ACCT--C-TT-CGCCG---TA----------CAAGA-T----T----C------------AA---CATCTGTT--AGAA-AC---------A--ACGTAGA-GT-GCAA----A-ACA------C-TCGTGA-TCATGTA-T--TG-TAGTGAC-CAGGGAAAGTAAA-CAAAT----------AA-TTAGT--ATGG-C-AAGAGAGATGCAA-TT--CGA-TTAG-CAAA-T--A---AGG-AAAGGAATCTTGGAGGGTGAACGC-T-AGTATC--CGTAT--AAATA-AGAGGCGGCAAAT--T---ATCATAACCGTCAGT---GGT-AAACTG-GAGGTTATG---GAT--TG-TC-CGCC--CNA-T-NATTGA-AACAGGT--A-AGTC---TA--AG-CGTATCC-A---T-A-TCGCGTATTTT-AGANTTAAATTTATTTG-ATT-C-AGAGGG-TT-CAGTTAA--TATTT-TATTTT-TACAG---AATTTTCAG-TTAAT---ATNTTATTTTC---AT--TTTATGTAAGAACATTTATGTTGTAAAGAATGTTTG-TATTTAATTTTAATATTCATTGTTAAATCAATGTTATATTATTTCCATGTTTATATTATAATAAAG-AGTGGT-AACTGGAAGT-T----GA-TTGT---CTCCT-TC-TAATT--ATT--A-CAGGA-C-GGGAA------TAAGAACAGGA-CCAC--TCCC-CGTA--C-CTG-TGGGGCAT--TCAACAGAATCCAGTAAAA-T----CGNA-TTCGACTTCCAGTA-AAGGAAATANTCCTCTTTCA-TA--AGTGCG-GATTTCCATTTGCGTTC-TGAC-TTGTTC-TTTTATCAG-CCCTAAAAC-AAATC-TTCATC---AAACTACC-TTTTAATG--A---CAC-AAAACTGAAGTC--ATTAGG-GCTGATAATAAGAA--TTGTCAGCACGATGAG-TAT-CCACAATTTCG-TGGATTTTCGAGACAATAACG-CCA---ATAGATCAAGTGGTGGATCCC---GNCCTAACACGAGG-NTAGG--ATATCGTAACACCTCTCACAAGCCAAGGGAGTGCGAGA---TA--AAAGAA-----------ACTATTTCCCCGTNA-TC-GAATAAACAATCNAAGAACAGTCCACG--T---TCTTGTTACGATA-GTGGTGCTGAGAATTCGG----GGTTTCGTTTCAAATGATGATCTATTAATCNCNAGTACACTACGCTCTGNCCTTCCTCATTT
Reference ( family-511 ) : ATCATAAAGAAA-A-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-CGGTCT-CT-CGTT--G-ATTAAAAA-T--AGCGCT-AAG-GAT--G-TTTG--ACCT--C-TT-CGCCG---TA----------CAAGA-T----T----C------------AA---CATCTGTT--AGAA-AC---------A--ACGTAGA-GT-GCAA----A-ACA------C-TCGTGA-TCATGTA-T--TG-TAGTGAC-CAGGGAAAGTAAA-CAAAT----------AA-TTAGT--ATG--C-AAGAGAGATGCAA-TT--CGA-TTAG-CAAA-T--A---AGG-AAAGGAATCTTGGAGGGTGAACGC-T-AGTATC--CGTAT--AAATA-AGAGGCGGCAAAT--T---ATCATAACCGTCAGT---GGT-AAACTG-GAGGTTATG---GAT--TG-TC-TNCC--CNN-T-NATTGA-AACAGGT--A-GGCC---TA--AG-CGTATCC-A---T-A-TCGCGTATTTT-AGANTTAAATTTATTTG-ATT-C-AGAGGG-TT-CAGTTAA--TATTT-TATTTT-TACAG---AATTTTCAG-TTAAT---ATNTTATTTTC---AT--TTTATGTAAGAACATTTATGTTGTAAAGAATGTTTG-TATTTAATTTTAATATTCATTGTTAAATCAATGTTATATTATTTCCATGTTTATATTATAATAAAG-AGTGGT-AACTGGAAGT-T----GA-TTGT---CTCCT-TC-TAATT--ATT--A-CAGGA-C-GGGAA------TAAGAACAGGA-CCAC--TCCC-CGTA--C-CTG-TGGGGCAT--TCAACAGAATCCAGTAAAA-T----CGNA-TTCGACTTCCAGTA-AAGGAAATANTCCTCTTTCA-TA--AGTGCG-GATTTCCATTTGCGTTC-TGAC-TTGTTC-TTTTATCAG-CCCTAAAAC-AAATC-TTCATC---AAACTACC-TTTTAATG--A---CAC-AAAACTGAAGTC--ATTAGG-GCTGATAATAAGAA--TTGTCAGCACGATGAG-TAT-CCACAATTTCG-TGGATTTTCGAGACAATAACG-CCA---ATAGATCAAGTGGTGGATCCC---GNCCTAACACGAGG-NTAGG--ATATCGTAACACCTCTCACAAGCCAAGGGAGTGCGAGA---TA--AAAGAA-----------ACTATTTCCCCGTNA-TC-GAATAAACAATCNAAGAACAG-CCACG--T---TTTTGTTACGATA-GTGGTGCTGAGAATTCGG----GGTTTCGTTTCAAATGATGATCTATTAATCNCNAGTACACTACGCTCTGNCCTTCCTCATTT
gi|1 : TCATAAAGAAA-AATTG-C-TC--TCT-G-GA-AA-T--TGT--AAACAT-----CATT-CG--CT-CT-CGTTT-G-ATTAAAAA-T--AGC-CT-AAG-GATAAG-TTTG--ACCT--C-TT-CGCCG---CAACT-------CAAGA-CAAAGTAAAAT------------AA---CATCTGTT--AGAA-AC---------ACTGCGTAGA-GT-----------------------------TCA------------AGTGAC-CGGGGAAA-TAAA-CAAAT----------AA-T-AGT--ATGG-C-AAGAAAGATGCAA-TT--CGAATTAG-CAAA-TTTA---CGGTAAAGGAATCTTGGAGG-TGAACGC-TTAGT-TCA-TGTATTAAAATG-AGGGCTCACTCATCCT---CTCACTACTTCTAGTTCTGGTGAAACTG-GACGTAGTG---AATATTGCTC-CTCT--CGAAT-GGTTAA-AACAGGTTTA-CGTT---TA--AT-C----CC-AAACT-AATCGCGTATTTTTAAACTTAAATTTATTTG-ATTTC-AGAGGG-TTTCAGTTAAGCTATTCATATTTT--ATAG---AATTTTCAG-TTAAT---ATCTTATTTTC---AGGATTTATGTAAAAACATTTATGTTGTAAAT--TGTTTGATATTTAATTTTAATATTCATTGTTAAATCAATGTTATATTATTTCCATGTTTATATTATAATAAAGAAGTGGT-AA-TGGAAGT-TTTTGAA-TTCTATGCTCCTCTC-TAACT--CTTAAA-CAGGAGCAGGGAAATCAAGTAAGCATGGCAGCCACCTTCCCTCGTA--CACTGTTGGGGCATCACCCACA-ATTCCAGAACAA-TGCGACGCATTTCGACTTCCAGTATAAAGGAATATTTCTCTTACAGTGATAGTGCGAAATGTCCATTTG-GTTC-TGATGTTGTTC-TTTTATCAGCCCCTAAAACAAAATCGTTCATTGCAAAACTA---TTTTAATGCCACCCCAC-ACCCCTG-AGTCATATTAGG-G-TGAT-ATAAGAA--TTGTCAGCACGATGAG-TATCCCACAA-TTCG-TGGAGTTTCGGGACAATAACACCCA---ATAGATCAAGTGGTGGATCCCGGGGACCTAACACGAGGTGTAGGATATATCGTAAC-CCTCTCACAAGCCAAGGGAGTGCGAGATTTTA--AAAGAA-----------GCTATTTCCCCGTCA-TC-AAATAAACAATTAATG--CA--CCACC--T---TCTT----CAAT-----GTGCTGAAAATTCGGTAGAGCTTTCGTATCAAATGATG----ATTAATCACCAGTA------ACTTTGGCTTTTCTCATTT
gi|10 : attattattcataacgataatctgagggacaagattttttgttagtaggggggggggaattatATCATAAAGAAA-A-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-CGG-CT-CT-CGTT--G-ATTAAAAA-T--AGCGTT-AAG-GAT--G-TTTG--ACCT--C-TT-CACCG---TA----------CAAGA-T----TC---C------------AA---CATCTGTT--AGAA-
gi|11 : gctgatatcatttagtttggcgtcttctgtttgataagaagatggcattgatgtcagaggtttATCAATAAGAAA-A-TTGTC-TC--TGT-A-GA-AA-T---------GCAT-----CATTGCAGT-T-CT-CGTT--G-ATCAAAAA-T--AGCGCT-AAG-GAT--G-TTTG--ACCTCCC-TT-CGCCG---TA-----------AATA-C----T----C------------CA---CAca
gi|12 : tcatttaacgaaaatcttgagacataaattgtttttgttattaggggaaattttATCATAAAGAAA---CTG-C-TC--TTTTG-GA-TA-T--TG---AAACAT-----CATT-CAGT-T-CT-CGTT--A-GTTAAAA--T--AGCGTT-ATG-GAT--G-TTTG--ATCT--C-TT-CGTCG---atattccaagacatcaagtaatg
gi|13 : aatcataacaataatcatgaggacaagattttttgttaagtaaggggggggggggtttG-AGTGGTCAACTGGAAGT-T----GAATTGT---CTTCC-TC-CAATT--ATTT-ATCAGGG-C-GGAAA------TAAGAATAGGA-TCAC--TCCC-CGTA--T-CTC-TAAGGCAT--TT-GCAGAATGCAGTAAAA------CGTA-CTCGACTTCCAGTA-AAAGAA
gi|14 : ATCATAAAGAAA-A-TTG-C-TC--TGT-A-GA-AG-T--TGT--AATTAT-----CATT-CAGT-T-CT-CGTT--G-GTTAAAAA-T--AGCGCA-AAT-GAT--G-GTTG--ACCT--C-TT-CGCCG---TA----------taa
gi|15 : atcataacgataatcttgaggacaagatttggggaatttTAGG--ATATCGTAACACCTCTCACAAGCCAAGCGAAAGCGAGA---TA--AAAAAAAAAACAACAACACTATTTCCCCGTGATTC-GAATAAACAATCCAAGAACAGTCCACA--T---TCTTGTTag
gi|16 : -AAATTGCAAAGTT--G---AAT--TT-TC-TGCCTCCCA-T-TATTTA-A-CAGGT--A-AGAT---TATAAG-TGTATCC-AC--T-C-GCGCGTATTTC-AGAGTTAAATTCATTTG-ATT-C-AGAG
gi|17 : gAAGAAATA-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAC-----CA-T-CGG-CT-CT-CGTG--G-ATTAAAAA-A--CGC-CT-AAG-GAT--G-TTTG--AC----C-TT-CGCCGAACTC----------CAAGA-
gi|18 : AAAGAAA---TTG-C-TC--TCT-GCGA-AA-TCTTGTCAAAACAT-----CATT-CGTCCT-CT-CGTT--G-ATTAAAAcaaagtaaa
gi|19 : CAG--TCAACAGAATCCAGTAAAA-T----CGGA-TTCGTCTTCCAGTA-ATGG-AATATTTCTCT
gi|2 : ATCATAAAGAAA-A-TTGGC-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-C--TCG-CT-CGTT--G-ATTAAAA--T--AGCGTT-AAG---T--G-TTTG--ACCT--C-TT-CGCCG---TA----------CA-GA-T----T----C------------AA---CATCTGTT--AGAA-AC---------A--ACGTAGA-GT-GCAA----A-ACA------C-TCGTGA-TCATGTA-T--TG-TAGTGAC-CAGGGAAAGTAAA-CAAAT----------AA-TTAGT--ATG--C-AAAAGAGATGCAA-TT--CGA-TTAG-CAAA-T--A---AGG-AAAGGAATCTTGGAGGGTGAACGC-T-AGTATC--TGTAT--AAATA-AGAGGTGGTA-----T---ATCATAATCGTCAGT---GGT-AAACTG-GAGGTTATAAATGAT--TG-TC-TCCT--TCT-T-AATTGA-TACAGGT--G-AGTCTT-TA--AG-CGTATCCAA---T-A-TCGCGTATTTT-AAATTTAAA-TTATTTG-ATT-C-AGAGGG-TT-CAGTTAA--TATTT-TA-TTT-GATAG---AATTTTCAG-TTAAT---ATGTTATTTTCAGAAT--TTTATGTAAAAACATTTATGTTGTA---AATGTTTG-TATTTAATTTTAATATTCATTGTT-AATCAATGTT-TATTATTTCCATGTTTATA-TATAATAAAG-AGTGGT-AACTGGAGGTAT----GA-TTGT---CTCCT-TCTTAATTGGATT--A-CAGGA-C-GGGAA------TAAGAACAGGA-CCAC--TCCC-CGTA--C-CTG-TGGGGCAC--TCAACAGAATCCAGTAAAA-T----CGGA-TTCGACTTCCAGTA-AAGGAAATAGTCCTCTTTCA-TA--AGT--G-GATTTTCATTTGCGTTC-TGAC-TTGTTC-TTTTATCAG-CCCTAAAAC-AAATC-TTCATC---AAACTATC---GTAATGA-A---CAC-AAAAC-GAAGTC--ATTAGG-GCTGATAATAAGAAT-TTGTCAGCACTATGAG-TAT-CCACAATTTCGTTGGATTTTCGAGACAATAACA-CCA---ATAGATCAAGTGGTGGAT-CC---GGCCTAACACGAGG-CTAGG--ATATCGTAACACCTCTCACAAGCCAAGGGAGTGC-AG---------------------------TATTTCCCCGTCA-TCAAAATAAACAATTGAAGTACAA------------------TATGAAACGTGGTGCTGAGAATTCGG----GG-TTCGTTTCAAATAATGATCTATTAATTCCAAGTACACTACGCTCTGTCCTTCTTTATTTat
gi|20 : TAAACAATCCAAGAACAGTCCACGTTT---TTTTGTTACGAT
gi|3 : ATCATAAAGAAA-A-TTG-C-TC--TGT-A-GA-AA-T--TG------CAT-----CATT-CAGT-T-CT-CGTT--G-ATCAAAAA-T--AGCGCT-AAG-GAT--G-TTTG--ACCC--CCTT-CGCCG---TAAAATACTCCACAATA-T----T----CCAAGACATCAGTAATGCCATCTGTT--AGGA-ACGTCAAAGTTA--ACTTAGA-GT-TCAG----ATACATATGTAC-TCATGA-TCATGTG-C--TT-TAGTGAC-CAGGAAAAGTAAA-CAAATAAATTGAAATAA-TTAGT--ATG--T-AAGAAAAATGCAT-TT--CGA-TTAT-CAAA-T--A---AGG-TAAGGAATCTTGGAGGGTGAACGC-T-AGT-TC--CGTAT--AAATA-AGAGACGGCAAAT--TCAAATTATAACCCTCATT---ATT-AAATTG-AAGGTTA-----GAT--TG-TC-TGCC--CAA-T-TATTGA-AACAGG-------------------------------T-A-CCGCGTATTTT-AGTGTTAAATTTAATTG-ATT-C-AGAGGG-TT-CAGTTAA--TATTT-TATTTT-TACAG---AATTTTT------------TGTTATT------AT--TTTATGTAAGAATATTTATGTTGTAAAGAATGTTTG-
gi|3 : atatcatttaacgaaaatcttgaggacaaaattgttttgttaataggggaaatttTTTTTNNNNNTGAACGC-T-AGT-TC--CGTAT--AAATgttttttnnnnntgaacgctagttccgtataaat
gi|4 : atatcatttaacgaaaatcttgaggacaaaattgttttgttaataggggaaatttatcataaagaaaattgctctgtagaaattgcatcattcagttctcgttgatcaaaaatagcgctaaggatgtttgacccccttcgccgtaaaatactccacaatattccaagacatcagtaatgccatctgttaggaacgtcaaagttaacttagagttcagatacatatgtactcatgatcatgtgctttagtgaccaggaaaagtaaacaaataaattgaaataattagtatgtaagaaaaatgcatttcgattatcaaataaggtaaggaatcttggagggtgaacgctagttccgtataaataagagacggcaaattcaaattataaccctcattattaaattgaaggttagattgtctgcccaattattgaaacaggtaccgcgtattttagtgttaaatttaattgattcagagggttcagttaatattttatttttacagaattttttgttattattttatgtaagaatatttatgttgtaaagaatgtttggtATCATAAAGAAA-A-ATG-CCTC--TGT-G-GA-AAAT--TGT--AAACATGCAGGCATT-CGGACTGCTACGTTATG-ATTAAAAA-TTAGGCGTT-AAGCGAT--GATTTG--ACCT--C-TT-CGA-G---TA----------CAAGAAT----T----C------------CA---C-TCTGTT--AGAATGT---------A--ACGTAGA-GTTGCAA----A-ACA------CGTCGTGAATCATGTAGT--TGGTAGTGAC-CAGGGAAAGTAAAACAAAT----------CA-TTAGCTGATGGCC-AAGAGAGAGGTAA-TTGTTGA-TTAGGCAAAAT--A---AGG-AAAGGAATCTTGGGAGGTGAACTC-T-AGTATC--TGTAT--AAATACAGAGGTGG--AAT--T---ATCATAATCGCCAGT---GGT-TAACTG-ATGGTTATG---A----TG-TCACTCC--TTC-TAAAGTGATAACAGGT--ATGGTCCTATA--AGCCGTATCTAA---TAA-TCGCATAGTTT-AAATTTAAA-TTATTTGAATT-CGAGAGGGTTT-CAGTAGA--TACTT-TATTTTATA-AGAAAAATTTTCAGTTTAACATAATTTTATTTTC---
gi|5 : attatCATAA-GAAA-A-TTG-T-TCCTTTT-G-GAGAA-T--TGT--AAA-AT-----CATT-CGGCCT-CT-CGTT--GCGTTAAAAACT--AGCGTTTAAG-GAT--G-TTTGCGACCT--C-TTTCGCCG---TA----------CAAGA-T----T----C------------AA---CATCTGTTACACAA-AC---------A--A-GT-GA-GT-GCAA----A-ACA------C-TCGTGA--CATGTA-TTCTG-TATGGACGCAGGGAAAGTAAA-CAAAT----------AATTTAGT--TGG--CTAAAAGAGATGCAAGTT--CGA--TAG-CAAA-T--AATCAAG-GAAGGAATCTTGGAGAGTG-ACGCTT-AGTATCTTTGTAT--AATAA-AGAGGTGG---AT-------TCATAATCGTCAGT---GGT--AACTG-GAGGTTAT----GAT--T
gi|6 : GA-C-GGGGA------TAAGAACAGGA-C-AC--TCCC-CGTAAAC-CTG-TGGG-CAT--TTA-CAGA--CCAGTAAAAAT----CG-A-TTCGACTTCCAGTA-AAGGAAATAAACCGAGCTAATTA--AGTGTG-GATTTCAA--AGCGTGCTTGAC-TTTTTCTTTTTATCAG-CCCTAAAAC-AA----TT--TC---AAACAACCTTTTTTATG--A---CACAAAAACTGAAGTC--ATTAGGTTCTGATAATAAGAAATTTGCCAGTACGATGAGTTTT-CCAAACTTTCG-TGGATTTTC------ATAACG-C
gi|7 : TTTTTNNNNNTGAACGC-T-AGT-TC--CGTAT--AAATA-AGAGACGGCAAAT--TCAAATTATAACCCTCATT---ATT-AAATTG-AAGGTTA-----GAT--TG-TC-TGTC--CAA-T-TATTGA-AACAGG-------------------------------T-A-CCGCGTATTTT-AGTGTTAAATTTAATTG-ATT-C-AGATGG-TT-CAGTTAA--TATTT-TATTTT-TACAG---AATTTTCAG-TTAAT-----------------AT--TTTATGTAAGAATATTTATGTTGTAAAGAATGTTTG-
gi|8 : tgttgtaaagaatgtttggt-TGGATATTGGAGACAATACCG-CTAGACATAAA---AGTGGTGGATCCC---GTCCTAATACG--G-ATA-----TATCGTAACACCTCTCAAATACCA--GCAAT-TAAGA---TATTAACGGA-----------AC-ATT--CTCATAA-AC--AACAAACAACAAAATAACA--TCATA--TATATTTTGTTACGATAAGTAGTGCTGAGAATTCGG----GGTTTCGTTTCAAAgtt
gi|9 : aattggtATCATAAAGAAA-A-TTG-C-TC--TGT-G-GA-AA-T--TGT--AAACAT-----CATT-CGG-CT-CT-CGTT--G-ATTAAAAA-A--AGCGCT-AAG-GAT--G-TTTG--ACCT--C-TT-CGTCG---TAACTC------CAAGA-CAAAGTAA--T------------AA---CATCTGCT--AGAA-AC---------A--ATGTAAACGT--CAAGGTTA-ACT------C-TCATGA-TAATGTA-T--TG-TAGTGAC-CAGGGG----AAA-TAAAT----------AA-TTAGc