lowQualScore : 111111111111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 77777 444444 333 777 666666 2 5555 2222 333333333 2222 4 11 11 3333 22 22 111111111111 2 55555555555555555555555555555555 1 2 2 1 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111 11 1 2222 111 11 22222 1 444444444 222 1 666666666666666666666666666666666666 11 555555555555555555555555555555555555555555555 11 333333333 11 11 1111111 33333333333 111 11 11 1111 4444444444444444 1 11 1 1 1 555555555555555555 1 2222 1 1 11 11 1 11 1 222222 11 1 1 77777 1111 2222 1 11 1 11 33333 1 1 11 11 1 222 11 1 1 1 2 1
lowQualScore : 66666 444444 111 111 222222 3 3333 6 1111 444444444 1111 0 88 3 88 2222 2 77 88 22 888888888888 0 66666666666666666666666666666666 5 0 4 4 0 5 4 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 777 33 0 0000 777 33 11111 0 999999999 000 3 0 999999999999999999999999999999999999 8 11 8 8 0 999999999999999999999999999999999999999999999 8 5 99 333333333 0 8 11 9 11 0 9999999 8 00000000000 8 666 8 8 11 8 11 8 2222 4444444444444444 0 33 3 8 0 0 0 000000000000000000 0 1111 55 3 3 88 6 22 3 88 9 3 111111 88 3 6 55555 8888 6666 3 88 2 88 33333 3 7 88 7 88 3 333 22 3 3 3 3 5
lowQualScore : ..... ...... ... ... ...... . .... . .... ......... .... . .. . .. .... . .. .. .. ............ . ................................ . . . . . . . ......................................................................................................................................................................................................................................................................................................................................... ... .. . .... ... .. ..... . ......... ... . . .................................... . .. . . . ............................................. . . .. ......... . . .. . .. . ....... . ........... . ... . . .. . .. . .... ................ . .. . . . . . .................. . .... .. . . .. . .. . .. . . ...... .. . . ..... .... .... . .. . .. ..... . . .. . .. . ... .. . . . . .
lowQualScore : 00000 000000 000 000 000000 7 3333 7 2222 000000000 2222 0 55 0 00 5555 5 55 00 55 000000000000 0 00000000000000000000000000000000 5 0 0 0 0 5 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 777 88 0 0000 555 22 00000 0 000000000 222 2 0 888888888888888888888888888888888888 0 00 0 0 8 000000000000000000000000000000000000000000000 0 6 00 000000000 8 0 00 8 00 8 0000000 0 00000000000 0 000 0 0 00 0 00 0 2222 9999999999999999 0 88 2 8 0 0 0 222222222222222222 0 2222 88 3 3 33 7 00 3 33 0 3 777777 33 3 0 33333 0000 0000 3 33 0 33 33333 3 0 33 3 33 3 333 00 3 3 3 7 0
consensus : NTAAACAAACTCTACAAAAATATCAAT-TAAA-ATAATTCTTATTTCAGAATATGCCCACGGTATTGAC-AAAGATA-TCTTCAAGAGT--AACGTGTA----CATTTATTT---TATAC-CTG----AAAAGCTGTTATACA-CATNTGCNATGTTGAGGAGCCGTTGGGCACGTNCCTGACACATANNACAANATATATTTGTAGAATTATATGGTGGCCCNTNAGTATGAAATATNCNACCTCNTCCAGGGCAATAAAGTCTGCANATGGNAATTATTTTACAATGTANAACACTTTATGCCTGGGCTACAATGGAACGATTCAAAAGGAATTNTTCCGAGTAANATATNAATAATACCCATGTAAATATTAGGAAGANNATNNTGTTAAACATCTTTTCGGAAACGGAAGCCATACTGGCCATAAAACGCCGGGATTAATTAGTCTGCAGGCAGTGCGTCCAGGTTGTATTTGTCGACAGAAAATTTGNATCTTCCCTAAAACACCCCCGTTAGTTCANACGGACTACCCAAAAGGATGTGAGTTTTTA--CCT--ATG-G-T-TTG---C-T--TGAATGA---TC--AA---TTGATGT----------GGTT----AAATG-A-AAATG--ATTCACA-ACAC---CT---GGCTCAT-AGTTTA-TG--CACAA-AAATTN--------ATGTTA--CAGTGATTTTTAAAA-ATAN-------------TACCAC---A-A---------TG-T--A-TAA-TATGCTTC------CCAA---T----CCA-T---TAA-TG-------------TCTTTCT-TGAACA--CAG--T------TGAAT-AACT--GCAGTGTCCT--TCCAC--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----TAC---------ACCC-AACTC--TACAATCCTTCT-ACCCT-C-TC-----TNC-------A--ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--CGAATTGGCTCCAACACCGGACCA-TCC--TTTTCACA-ATAAAT--AC-CGTCGCCA--TCACT-ATCA-CGTC--AC-CTGTCA-GACCA-C-CATGG-TTCATGTCACATGCA--TGTTCCGTACG--TGAATA-----CGTATGGTC-AAGACTGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGCAATT-ATTTTTCGGGACTTGGAA-AAC-TTGTTC-AAAGTTATTTTTG
Reference ( gi|3 ) : TTAAACAA--TC-ACAAAAATATCAATCTAAATATAATT-T-ATTTCAGAATATGCC-A-GATATTGACCAAGGATAATCTTCAAGAGT-TAGCGTGTA----CATTTATTT---TATAC-CTG----AAAAGCTGTTATACATCATTTACAATGTTGAGGAG--GGTGGACACATGCT--ACACATATTACA-CATATATC-----------ATGGTG-CC-GTTAATATAAAACATCCAACCTCCCTCAG--CAATAAAGT-TGCATATGATAATTATTT-ACAATATATAACA---TATGCT--GGC-A-AATG---CGATT---AAGAAATTTTTTGAAATAAAATATAAATAA-AC--------AT--TA--AA--ACATACTGT--A-TATCTTTTTGGAAA-G-----CAT----GC---AAAA----GAGA-TAATTAGT--GCAG-CAG-GCGTCCAGG-TGT-T--GT-GA-AGAAA--TTGCA-CTT-----AA-CAC-------AG--CAGA---ACT------AAGG-TGTGA---TTTA--CCT--ATG-G-T-TTG---C-T--TGAATGA---T---GA--ATTGATGT----------GGT-----AAATG-A-AAATG--ATTCACA-ACAC---CT---GGCTCAT-AGTTTA-TG--CACAA-AAATTG--------ATGTTA--CAGTGATTTTTAAAA-ATAG-------------TACCAC---A-A---------TG-T--A-TAA-TATGCTTC------CTAA---T----CCA-----TAA-TG-------------TCTTTCT-TGAACA--CAG--T------TGAAT-AACT--GCAATGTCCT--TCCAC--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----TAC---------ACCC-AACTC--TACAATCCTTGT-ACCCT-C-TC-----TAC-------A--ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGGTCA-TCC--TTTTCATA-ATAAAT--AC-CGTCGCCA--TCACT-ATCATCGTCTCGTACTGTCA-GACCA-CACATGG-TTCATGTCACATGCA--TGTTCCGTACG--TGAATA-----CGTATGGTC-AAGACAGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGTGATT-ATTTTTCAGGACTTGGAA-AAC-TTGTTCAAAAGTTAGTTTTG
gi|1 : TAAACAAACTCTACAAAAATATCAAT-TAAA-ATAATT-TTATTTCAGAATATGCCCACGATATTGAC--AAGATA-TCTTCAAGAGTATA-CGTGTA----CATTTATTT---TATACTCTG----AAAAGCTGTTATACA-CATT-ACAATGTTGAGGAG--GTTGGACACATGCT--ACACATATTACAACATATAT------------ATGGTG-CCCGTAAGTATAAAA--TCCA-CCTCCTCCAG--CAATAAAGTCTGCATATGATAATTATTTTACAATATAAAACACTTTATGCCTGGGCTACAATGGAACGATTCAAAAGAAATTTTT-GAAATAAA-TATAAATAA-AC--------ATATTA--AAGAAAATCTTGT--AATATCTTTTTGGAAACG-----CAT----GCCATAAAAC---GAGA-TAATTAGTCTGCAGGCAGTGCGTCCAGG-TGT-TTTGTCGACAGAAAATTTGAATCTT-----AAACAC-------AG--CAGACGGAC-------AAGG-TGTGA---TT-A--CCT--ATG-G-T-ATG---CAT--TGAATGA---TCC-AA--CTTGATGT----------GGTTA---AGATGGA-AAATG--ATTCACA-ACAC---CT---GGCTCAT-AGTTTAATT--CACAA-AAATTG--------ATGTTA--CAGTGATTTTTAAAA-ATAG-------------TACCAC---A-A---------TGAT--A-TAATTATGCTTTGCCTTACTAA---TAATCCCA-----T-A-TG-------------TCTTTCT-TGAACAC-CAG--TG-----TGAATAAACT--GCAATGTCTTCGCCCAC--A----CT-T-----AT----CAACATC----T-TT-TG--C-AGA--TTGGA-A-GCACCAA----TA
gi|11 : agctcttgtaatccaacgttttgattcttaagatctttgatcatgtcaacgatcatatccggcttcatcgactttgcagatccttcctagtttctcctgtaaaatatgataatttgaaagttttatacccttgtcatgaaatatccaggacatatatatagtattaggtttttttgtcttctgtcatgnnnnnnnnnnnnnnnnnnnnnnnnnatacagctaaactatatggtactatccatctcaacaatgcaagagattttgactttggatatatattcgccattgatatatttggttcagggggacggtatgtcgtacttgtacataatatatacatattgtgttgtttgaaaaaattcccgattattgaaataaataaagttatagacttttgattttcggcccatctgtggactaacagacctggtcagtattggtatgaccaaagcaaagtctgaggtcaaccaattacttgacagtctgtatgagtcggatagatccttatcaatgtctaaattgtgtaatgttttagtttgtaataaatgtaatttacatattttatgtatttaacagaaggtgttgttaacaaacctgcaacatagacttttcaggaggggttgccccttcttctgcaaggcattgtagagcatattctcgcagcctggttttctggcatcggaacatcatagaatcctttcagcacctttcccggttgtttatctccatatcaacctgtactgtgtgagtccccaaattgaatagTAAA-ATAATTCT-ATTTCAGAATATGCCCACGGTATTGA--AA--ATA-TCTTCAAGAGT---ATGTGTA----CATTTATTT---TA--C-CTG----AAAAGCTGTTATA
gi|2 : ATCTTCAAGAGT--AACGT-TATGATCATTTATTCCTCTCTACGCTGTTTAAAAAGCTGTTTTACA-CATGTGTCATGTTA--GAGCCGTTGGGTACGTCCCTGACACATAAAATA-AATATATTTGTAGAATTATATGGTGGCC-TTT----TGAAATATATCACCTCG---AGGGCAATAA-GT-TGCAAATGGAAATTATTT-ACAATG-ATAA----------------------------------AAAGAATTGTTCCGAGTAATATATTAATAATACCCATGTAAAT--TAGGAA--TTATAGTGTTAA-CAT-TTTTCGGAAA-AGAAGCCATACTGAC---AAAACGCCAGGATTAATTAGT--GCAG-CAG-GTGT-CAGGTTATAT--GT-GA-AG-AA--TTGCA-CTTCCCTAAA-CACCCCCGTTAGTTTATAC--ACTACCCAAAAGGATGTAAGTTTTTACTCCT--ATGTGTT-TTG---C-TAATGAATGAACCT---AA----TGATGTATAGAAAGACAGTTTAAGAAATG-ATAAATGAAATTCACACCCACTGACTAGAGACTCATAAGTTTATTG--CACAATTAATTATGACCCCCATGTTACTCAGTGA-TTTTAAAA-GTAAATCCCCTTGATCTTACCACCATA-AATGATGATGTG-T--ATTAA-TATGCTTC------CCAAACTT----CCATTT--TAA-TGATGTTCATATAGTTCTGTAT-TGA--G--CAG--TTGAGAGTGAAT-AACT--GCAGTGT-CT--TCCACCTATCTCCT-TTTAGAATAGTGC-ACACC-CATTGTC-TGACC-AGA--TTGGA-AGG--CCAA----TAA---------TCCCGAACTCTTTAAAATCCTTGTGACCCTGCGTC-----TACTTCATCAA--ATCG-ATTAAATT----CCCG-TTAT
gi|16 : gttttaggtttgtaataaatgtattgactgtatattatggaagtgttacattcctgcaatcatgactttcaggagggtggccctatttctcagcattgtagcattttctgcatcgaacatcaatagttcaacatctccggtttaatctccaatagcaatgtactgtgtctcaaaatttgaatacacatacagaatttcaatataaaaaatacctctcatttaagaatacccattcatccagtgcccatatgtacgccactaagtattataaatA----CATTTATTT---TA--C-CTG----AAAAGCTGTTATA
gi|4 : TTA--CCTTTATG-G-TGTTGTTCC-T--T-AATGA---TCATGAGTATAGCTGT----------GG------AAATG-A-AAATG--ATTCACA-ACA----CT---GGCTCAT--CTTTA-TGCACACAA-AAATT---------ATGTTA---AGTGATTTTTAAAATAT-----------------CCACT--ATA---------TG-TTCA-TAA-TA-GGTTC------TTCA---T----CCAATCATTAACTGT------------TCTTTCTCTGACTAGCCAGTAT------TG-AT-AACTTGACA--GTCCT--TCC-C--A----CTCT-----GTC---C-ATATCAC-TT-TCGTA--CAAGATTTTAGACA-A--CCAAGGACTACCAGTCATAAACTC-AATTT--TACAA-CCTTCT-ACCCT-C-TCTTCCGTAT-------AATATCATTTTAAATTTTCCTCTGC-TATATCTCGTCAATCGAATTGGCTCCAACACT-GACCAGTCCTTTTTTCACACATAAATTAACTTGTCGCGATTTCACTAATCCACGTCT-AT-CTATCAGGACTACCATATGGTTTCATGTCACATGCATTTTTTCC-TACGTTTGCATATTTATCTCATGGTCTAAGACTGAAAATCA-TAAGTAATTTAAATTAATTCTTAATTTTACTGCAATTCATTTTTCAGGACTTGGAACAACTTTGACGAAAAGTTATTCTT
gi|5 : --ATTCACA-ACAC---CT---GGCTCAT-AGTTTA-TG--CAAAA-AAAATT--------ATGTTA--TAGTGATTTTTAAAA-ATAT-------------TCCCAC---A-A---------TG-T--A-TAA-TATGCTTC------CCAA---T----CCA-----TAA-TG-------------TCTTTCC-TGAACA--CCG--T------TGAAT-AATT--GCAGTGTCCT--TCCAT--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----GAC---------ACCG-AATTC--TACAATCCTTCT-ACCCT-C-TC-----TCC-------A--ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGACCA-TCC--TTTTCACA-ATAAAT--AC-CGTCGCCA--TCACT-ATCATCGTC----ACTGTCA-GACCA-CCCATGG-TTCATGTCACATGTA--TGTTCCGTACG--TGAATA-----CGTATGATC-AAGACTGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGCAATT-ATTTTTCAGGACTTGGAA-AAC-TTGTTC-AAAGTTATTTTTGtacgaaatcgtgaatctaactcaccactg
gi|6 : CAC---A-A---------TG-T--A-TAA-CATGCTTC------CCAA---T----CCT-----TAA-TG-------------TCTTTCC-TGAACA--CAG--T------TGAAT-AACT--GCAGTGCCCT--TCAAC--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----GAC---------ACCC-AACTC--TACAATCCTTCT-ACCCT-C-TC-----TCC-------A--ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGACCA-TCC--TTTTCAGA-ATGAAT--AG-TGTCGCCA--TCACT-ATCA--GAC-CAC-CTG----GGCC----CATGG-TGCATGTCACATGCA--TGTTCCATACG--TGAATA-----CGTATGGTC-AAGACTGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGCAATT-ATTTTTCGGGACTTTGAA-AAC-TTGTTC-AAAGTTATTTTTGatagcatataatctgctcaccagctg
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): TACTGAATAAATAAGTTATAGACTTTTGATTTCGGCCCATCTGTGACTATACAGACCTGGTCAGGTATTGGTTGACCGAAGCAAAGTCAAGGTCAACCAATACCTGACCAGGTCCATATAGTCAGGATAGACCTCATCAAAAATCTAAAATGTGTAATGTTTTAGGTTTGTAATAAATGTATTGACTGTATATTATGGAAGTGTTGTTATATACCTGCAATCATGACTTTCAGGAGGGGTAGCCCTTTTCTCAGCATTGTAGCATATTCTGCATTTTCTGCATCGAACATCATAGTTCAACACCTTTCCGGTTTTATTTCCAATCAATGTACTGTATCCTACAAAATTTGAAT
Unaligned ( gi|8 ): ATGTTTTAGGTTTGTAATAAATGTATTTAATGTATATTACAGAAGTGTTGTTACAAACCTGCAATCATGACTTTCAGGAGGGGTTGCCCTTTTCTCAGCATTGTAGCATATTCTGCATTTTCTGCATCGAACATCATAGTTCAGCACCTTTCCGGTTTTTATCTCCAATCAATGTACTGTGTCCTACCAAATTGAA
Unaligned ( gi|9 ): CTGATCATTCAATAAAGCAGTTATTGAATTTTGATGAGGTCTACTTCAGTGACCTATATCAGAACCGGTCAGTATTCAGTGGACCAAACACTGTAGATATGGAGGCGACTCAAATCTGACAGGTGCAATATCAGCA
Unaligned ( gi|10 ): ACAATTACTGAATTTCGATTAGGTCTACTCGTGCATATACGGACCTGGTGCAGGTATTAGTTGGCCGAGACCGAAAACCGAGGATAGCCAAAC
Unaligned ( gi|12 ): ATACAATAAATTGACTTTTAATTGGGTGTGTCCTTGATGATATGGACCTCTGATCAGGTATTGGGTGGCTGAAGGCCAAAGTCAA
Unaligned ( gi|13 ): TTGATCAACCAATGCCTGAACAGGTTCCTGTAGTCATGAGTAGACCTGATCAAAAGTCAATATCAATAGTTGTATAAA
Unaligned ( gi|14 ): TACATGACTTTCGATGAGGTCTACTCTTGGCTATACAGACTTTGTCAGGCAGTGGTTGACCGAGGCCATAGGCTGA
Unaligned ( gi|15 ): AGTTCAACACATTTCCGGTTTTATTTCCAATCAATGTACTG
Alignments
lowQualScore : 1111111111111111111111 11111111111111111111111111 11111111111111111111111111111111111111
lowQualScore : 11 2 1111 111 6666666666666666666666666666666666 11111111 1 222 1111 111111111 1111 1 1 33 333 22 999999999999 2 111 111 111 33 2 333333333333333 22222 33333 333333333 2222 1 0000000000000000000000 44 00000000000000000000000000 11 22 11 2 4444444 2222 222 2 33333333333333333333333333333333333333 2 333 11 11 1 111 22222222 4444444444444 666666666666666666 1 1 1 11 111 111 333333333 111 4444444444444444 333333333333333 222222 222222222222222 4444444444444 11 222222222 1111111 22222222222 111 1111 333333333 11 444444444444 1111 1 1 111 1 11 1 11 1 11 11 2 333333 1 11111111 1 11 11 22222 1 11 11 1 111 1 1 22
lowQualScore : 88 7 7 0 4444 999 3333333333333333333333333333333333 77777777 0 333 2 7777 888888888 7777 3 4 0 1 7 00 0 0 1 111 22 11 777777777777 3 1 666 0 222 1 777 00 7 3 222222222222222 0 1 66666 00000 7 6 888888888 0 1 7777 0 4 1 7777777777777777777777 22 22 77 0 6 0 55555555555555555555555555 0 44 22 33 3 6 7777777 7777 999 1 3 11111111111111111111111111111111111111 3 777 33 33 0 111 22222222 2 0000000000000 111111111111111111 0 0 0 11 8 444 444 88 8 8 8 8 1 000000000 444 0 0 6666666666666666 333333333333333 6 99 6 6 99 888888 000000000000000 6 3333333333333 6 3 55 666666666 6 99 3 99 4444444 6 22222222222 6 111 6 6 99 6 99 6 6 99 4444 222222222 8 11 0 8 8 8 1 888888888888 8 7777 0 0 0 555 2 0 33 0 0 33 0 33 33 0 111111 3 0 77777777 0 33 6 33 55555 0 33 3 33 0 777 0 2 0 33
lowQualScore : .. . . . .... ... .................................. ........ . ... . .... ......... .... . . . . . .. . . . ... .. .. ............ . . ... . ... . ... .. . . ............... . . ..... ..... . . ......... . . .... . . . ...................... .. .. .. . . . .......................... . .. .. .. . . ....... .... ... . . ...................................... . ... .. .. . ... ........ . ............. .................. . . . .. . ... ... .. . . . . . ......... ... . . ................ ............... . .. . . .. ...... ............... . ............. . . .. ......... . .. . .. ....... . ........... . ... . . .. . .. . . .. .... ......... . .. . . . . . ............ . .... . . . ... . . .. . . .. . .. .. . ...... . . ........ . .. . .. ..... . .. . .. . ... . . . ..
lowQualScore : 00 3 3 0 8888 000 2222222222222222222222222222222222 55555555 0 222 5 0000 000000000 0000 3 0 7 0 3 00 7 7 0 000 00 33 000000000000 3 0 777 7 000 0 000 00 3 3 333333333333333 7 0 77777 77777 3 7 333333333 7 0 3333 7 0 0 7777777777777777777777 00 00 00 7 7 7 77777777777777777777777777 7 77 33 33 7 7 0000000 7777 777 0 7 00000000000000000000000000000000000000 7 333 88 88 0 000 22222222 5 2222222222222 555555555555555555 0 0 0 00 0 000 000 88 0 0 0 0 4 000000000 222 8 8 4444444444444444 777777777777777 7 22 7 7 22 333333 000000000000000 7 3333333333333 7 2 88 000000000 7 22 7 22 3333333 7 00000000000 7 777 7 7 22 7 22 7 7 22 2222 000000000 0 00 8 0 0 0 0 000000000000 0 0000 8 0 0 888 5 0 88 2 0 88 0 88 88 0 555555 2 0 22222222 0 88 5 88 00000 0 88 2 88 0 555 0 0 0 88
consensus : NTAAACAAACTCTACAAAAATATCAAT-TAAA-A--TAATTCTTATTTCAGAATA-------------TGCCCA------CG-------GTATTGAC-AAAGATA-TCTTCAAGAGT-A-ACGTGTA----CATTTATTT---TATAC-CTG----AAAAGCTGTTATACA-CAT-TACAATGTTGAGGAG--GTTGGACACGTGCT--ACACATATTACAACATATATC-----------ATGGTG-CCCGT-AGTATAAAATAT-CCACCTCCCCCAG--CAATAAAGT-TGCATATGATAATTATTT-ACAATATAAAACA--TTATGCC--GGCTACAATG---CGATT-AAAAGAAATTTTTC-G-AATAA-ATATAAATAA-AC--------ACATTAG-A--AANATANTGT--AATATCTTTTCGGAAA-G---GCCATGC--GC---AAAA---CGAGATTAATTAGT-TGCAGGCAG-GCGTCCAGGTTGT---TGT-GA-AGAAA--TTGCA-CTT-----AAACAC-------AG--CAGAC--ACTA-----AAGG-TGTGA---TTTA--CCT--ATG-G-T-TTG---C-T--TGAATGAT-C--A-----A-TTGATGT----------GGTT----AA-AT-GA-AAATG--ATTCACA-ACAC---CT---GGCTCAT-AGTTT-A-TGCACA-A-AAATT--------NATGTTA--CAGTGATTTTTAAAAATA-------------TTACCAC---A-A---------TG-T--A-TAA-TATG--CTTC------CCAA---T----CCA--TTAA-TG-------------TCTTTCT-TGAACA--CAG--T------TGAAT-AACT--GCAGTGTCCT--TCCAC--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----TAC---------ACCC-AACTC--TACAATCCTTCT-ACCCT-C-TCTNC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGACCA-TCC--TTTTCACA-ATAAAT--AC-CGTCGCCA--TCACTA--TCATCGTC-AC---CTGTCA-GACCA-C-C--ATGG-TTCATGTCACATGCA--TGTTCCGTACG--TGAATA-----CGTATGGTC-AAGACTGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGCGATT-ATTTTTCAGGACTTGGAA-AACTTGTTCG-AAAGTTATTTTTG
Reference ( family-5070 ) : NTAAACAAACTCTACAAAAATATCAAT-TAAA-A--TAATTCTTATTTCAGAATA-------------TGCCCA------CG-------GTATTGAC-AAAGATA-TCTTCAAGAGT-A-ACGTGTA----CATTTATTT---TATAC-CTG----AAAAGCTGTTATACA-CATNTGCNATGTTGAGGAGCCGTTGGGCACGTNCCTGACACATANNACAANATATATTTGTAGAATTATATGGTGGCCCNTNAGTATGAAATATNCNACCTCNTCCAGGGCAATAAAGTCTGCANATGGNAATTATTTTACAATGTANAACACTTTATGCCTGGGCTACAATGGAACGATTCAAAAGGAATTNTTCCG-AGTAANATATNAATAATACCCATGTAAATATTAGGAAGANNATNNTGTTAAACATCTTTTCGGAAACGGAAGCCATACTGGCCATAAAACGCCGGGATTAATTAGTCTGCAGGCAGTGCGTCCAGGTTGTATTTGTCGACAGAAAATTTGNATCTTCCCTAAAACACCCCCGTTAGTTCANACGGACTACCCAAAAGGATGTGAGTTTTTA--CCT--ATG-G-T-TTG---C-T--TGAATGAT-C--A-----A-TTGATGT----------GGTT----AA-AT-GA-AAATG--ATTCACA-ACAC---CT---GGCTCAT-AGTTT-A-TGCACA-A-AAATT--------NATGTTA--CAGTGATTTTTAAAAATA-------------NTACCAC---A-A---------TG-T--A-TAA-TATG--CTTC------CCAA---T----CCA--TTAA-TG-------------TCTTTCT-TGAACA--CAG--T------TGAAT-AACT--GCAGTGTCCT--TCCAC--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----TAC---------ACCC-AACTC--TACAATCCTTCT-ACCCT-C-TCTNC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--CGAATTGGCTCCAACACCGGACCA-TCC--TTTTCACA-ATAAAT--AC-CGTCGCCA--TCACTA--TCA-CGTC-AC---CTGTCA-GACCA-C-C--ATGG-TTCATGTCACATGCA--TGTTCCGTACG--TGAATA-----CGTATGGTC-AAGACTGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGCAATT-ATTTTTCGGGACTTGGAA-AACTTGTTC--AAAGTTATTTTTG
gi|1 : TAAACAAACTCTACAAAAATATCAAT-TAAA-A--TAATT-TTATTTCAGAATA-------------TGCCCA------CG-------ATATTGAC-AA-GATA-TCTTCAAGAGT-ATACGTGTA----CATTTATTT---TATACTCTG----AAAAGCTGTTATACA-CAT-TACAATGTTGAGGAG--GTTGGACACATGCT--ACACATATTACAACATATAT------------ATGGTG-CCCGTAAGTATAAAAT---CCACCTCCTCCAG--CAATAAAGTCTGCATATGATAATTATTTTACAATATAAAACACTTTATGCCTGGGCTACAATGGAACGATTCAAAAGAAATTTTT--GAAATAA-ATATAAATAA-AC--------ATATTA--AAGAAAATCTTGT--AATATCTTTTTGGAAACG-----CAT----GCCATAAAA---CGAGA-TAATTAGTCTGCAGGCAGTGCGTCCAGG-TGT-TTTGTCGACAGAAAATTTGAATCTT-----AAACAC-------AG--CAGACGGAC-------AAGG-TGTGA----TTA--CCT--ATG-G-T-ATG---CAT--TGAATGATCC--A-----ACTTGATGT----------GGTT----AAGATGGA-AAATG--ATTCACA-ACAC---CT---GGCTCAT-AGTTTAA-TTCACA-A-AAATT--------GATGTTA--CAGTGATTTTTAAAAATA-------------GTACCAC---A-A---------TGAT--A-TAATTATG--CTTTGCCTTACTAA---TAATCCCA--T--A-TG-------------TCTTTCT-TGAACAC-CAG--TG-----TGAATAAACT--GCAATGTCTTCGCCCAC--A----CT-T-----AT----CAACATC----T-TT-TG--C-AGA--TTGGA-A-GCACCAA----TA
gi|11 : agctcttgtaatccaacgttttgattcttaagatctttgatcatgtcaacgatcatatccggcttcatcgactttgcagatccttcctagtttctcctgtaaaatatgataatttgaaagttttatacccttgtcatgaaatatccaggacatatatatagtattaggtttttttgtcttctgtcatgnnnnnnnnnnnnnnnnnnnnnnnnnatacagctaaactatatggtactatccatctcaacaatgcaagagattttgactttggatatatattcgccattgatatatttggttcagggggacggtatgtcgtacttgtacataatatatacatattgtgttgtttgaaaaaattcccgattattgaaataaataaagttatagacttttgattttcggcccatctgtggactaacagacctggtcagtattggtatgaccaaagcaaagtctgaggtcaaccaattacttgacagtctgtatgagtcggatagatccttatcaatgtctaaattgtgtaatgttttagtttgtaataaatgtaatttacatattttatgtatttaacagaaggtgttgttaacaaacctgcaacatagacttttcaggaggggttgccccttcttctgcaaggcattgtagagcatattctcgcagcctggttttctggcatcggaacatcatagaatcctttcagcacctttcccggttgtttatctccatatcaacctgtactgtgtgagtccccaaattgaatag-TAAA-A--TAATTCT-ATTTCAGAATA-------------TGCCCA------CG-------GTATTG----AAAATA-TCTTCAAGAGT---ATGTGTA----CATTTATTT-----TAC-CTG----AAAAGCTGTTATA
gi|16 : A----CATTTATTT---TA--C-CTG----AAAAGCTGTTATA
gi|2 : TACAGAATT-TCAATATAAA-AAATACCTCTCATTTAAGAATACCCATTCATCCAGTGCCCATATGTACGCCACTAAGTATT-AT-AAA--TA-TCTTCAAGAGT-A-ACGT-TATGATCATTTATTCCTCTCTACGCTGTTTAAAAAGCTGTTTTACA-CATGTGTCATGTTA--GAGCCGTTGGGTACGTCCCTGACACATAAAATAA-ATATATTTGTAGAATTATATGGTGGCCTTT-----TGAAATATATCACCTCG---AGGGCAATAA-GT-TGCA-----------------AATGGAAA-----TTAT-------TTACAATG-----AT--AAAAAGAATTGTTCCG-AGTAATATATTAATAATACCCATGTAA--ATTAGGA--ATTATAGTGTT-AACAT-TTTTCGGAAA-AGAAGCCATACTGAC---AAAACGCCAGGATTAATTAG--TGCA-GCAG-GTGT-CAGGTTATA--TGT-GA-AGAA---TTGCA-CTTCCCT-AAACACCCCCGTTAGTTTATAC--ACTACCCAAAAGGATGTAAGTTTTTACTCCT--ATGTGTT-TTG---C-TAATGAATGAA-CCTA-----A--TGATGTATAGAAAGACAGTTTAAGAA-AT-GATAAATGAAATTCACACCCACTGACTAGAGACTCATAAGTTT-ATTGCACA-ATTAATTATGACCCCCATGTTACTCAGTGA-TTTTAAAAGTAAATCCCCTTGATCTTACCACCATA-AATGATGATGTG-T--ATTAA-TATG--CTTC------CCAAACTT----CCATTTTAA-TGATGTTCATATAGTTCTGTAT-TGA--G--CAG--TTGAGAGTGAAT-AACT--GCAGTGT-CT--TCCACCTATCTCCT-TTTAGAATAGTGC-ACACC-CATTGTC-TGACC-AGA--TTGGA-AGG--CCAA----TAA---------TCCCGAACTCTTTAAAATCCTTGTGACCCTGCGTCTACTTCATCAA----ATCG-ATTAAATT----CCCG-TTAT
gi|3 : gttttaggtttgtaataaatgtattgactgtatattatggaagtgttacattcctgcaatcatgactttcaggagggtggccctatttctcagcattgtagcattttctgcatcgaacatcaatagttcaacatctccggtttaatctccaatagcaatgtactgtgtctcaaaatttgaatacacaTAAACAA--TC-ACAAAAATATCAATCTAAATA--TAATT--TATTTCAGAATA-------------TGCC-A-------G-------ATATTGACCAAGGATAATCTTCAAGAGTTA-GCGTGTA----CATTTATTT---TATAC-CTG----AAAAGCTGTTATACATCATTTACAATGTTGAGGAG--GGTGGACACATGCT--ACACATATTACA-CATATATC-----------ATGGTG--CCGTTAATATAAAACATCCAACCTCCCTCAG--CAATAAAGT-TGCATATGATAATTATTT-ACAATATATAACA---TATGCT--GGC-A-AATG---CGATT---AAGAAATTTTTTGA-AATAAAATATAAATAA-----------ACATTAA----AACATACTGT---ATATCTTTTTGGAAA-----GC-ATGC-------AAAA----GAGAT-AATTAGT--GCAG-CAG-GCGTCCAGGT-GT---TGT-GA-AGAAA--TTGCA-CTT------AACAC-------AG--CAGA---ACTA------AGG-TGTGA---TTTA--CCT--ATG-G-T-TTG---C-T--TGAATGAT-G--A-----A-TTGATGT----------GGT-----AA-AT-GA-AAATG--ATTCACA-ACAC---CT---GGCTCAT-AGTTT-A-TGCACA-A-AAATT--------GATGTTA--CAGTGATTTTTAAAAATA-------------GTACCAC---A-A---------TG-T--A-TAA-TATG--CTTC------CTAA---T----CCA--T-AA-TG-------------TCTTTCT-TGAACA--CAG--T------TGAAT-AACT--GCAATGTCCT--TCCAC--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----TAC---------ACCC-AACTC--TACAATCCTTGT-ACCCT-C-TCTAC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGGTCA-TCC--TTTTCATA-ATAAAT--AC-CGTCGCCA--TCACTA--TCATCGTC-TCGTACTGTCA-GACCA-CAC--ATGG-TTCATGTCACATGCA--TGTTCCGTACG--TGAATA-----CGTATGGTC-AAGACAGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGTGATT-ATTTTTCAGGACTTGGAA-AACTTGTTCA-AAAGTTAGTTTTG
gi|4 : tTTA--CCTTTATG-G-TGTTGTTCC-T--T-AATGAT-C--ATGAGTA-TAGCTGT----------GG------AA-AT-GA-AAATG--ATTCACA-ACA----CT---GGCTCAT--CTTT-A-TGCACACA-AAAAT--------TATGTTA---AGTGATTTTT-AAAATA-------------T--CCACT--ATA---------TG-TTCA-TAA-TAGGTTCTTCAT----CCAA---T-----CA--TTAACTGT------------TCTTTCTCTGACTAGCCAGTAT------TG-AT-AACTTGACA--GTCCT--TCC-C--A----CTCT-----GTC---C-ATATCAC-TT-TCGTA--CAAGATTTTAGACA-A--CCAAGGACTACCAGTCATAAACTC-AATTT--TACAA-CCTTCT-ACCCT-C-TCTTCCGT----ATAATATCATTTTAAATTTTCCTCTGC-TATATCTCGTCAATCGAATTGGCTCCAACACT-GACCAGTCCTTTTTTCACACATAAATTAACTTGTCGCGATTTCACTAATCCA-CGTCTAT---CTATCAGGACTA-C-CATATGGTTTCATGTCACATGCATTTTTTCC-TACGTTTGCATATTTATCTCATGGTCTAAGACTGAAAATCA-TAAGTAATTTAAATTAATTCTTAATTTTACTGCAATTCATTTTTCAGGACTTGGAACAACTTTGACGAAAAGTTATTCTT
gi|5 : --ATTCACA-ACAC---CT---GGCTCAT-AGTTT-A-TGCAAA-A-AAAAT--------TATGTTA--TAGTGATTTTTAAAAATA-------------TTCCCAC---A-A---------TG-T--A-TAA-TATG--CTTC------CCAA---T----CCA--T-AA-TG-------------TCTTTCC-TGAACA--CCG--T------TGAAT-AATT--GCAGTGTCCT--TCCAT--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----GAC---------ACCG-AATTC--TACAATCCTTCT-ACCCT-C-TCTCC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGACCA-TCC--TTTTCACA-ATAAAT--AC-CGTCGCCA--TCACTA--TCATCGTC-A----CTGTCA-GACCACC-C--ATGG-TTCATGTCACATGTA--TGTTCCGTACG--TGAATA-----CGTATGATC-AAGACTGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGCAATT-ATTTTTCAGGACTTGGAA-AACTTGTTC--AAAGTTATTTTTGtacgaaatcgtgaatctaactcaccactg
gi|6 : CAC---A-A---------TG-T--A-TAA-CATG--CTTC------CCAA---T----CC---TTAA-TG-------------TCTTTCC-TGAACA--CAG--T------TGAAT-AACT--GCAGTGCCCT--TCAAC--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----GAC---------ACCC-AACTC--TACAATCCTTCT-ACCCT-C-TCTCC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGACCA-TCC--TTTTCAGA-ATGAAT--AG-TGTCGCCA--TCACTA--TCA-GACC-AC---CTG----GGC---C-C--ATGG-TGCATGTCACATGCA--TGTTCCATACG--TGAATA-----CGTATGGTC-AAGACTGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGCAATT-ATTTTTCGGGACTTTGAA-AACTTGTTC--AAAGTTATTTTTGatagcatataatctgctcaccagctg
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TACTGAATAAATAAGTTATAGACTTTTGATTTCGGCCCATCTGTGACTATACAGACCTGGTCAGGTATTGGTTGACCGAAGCAAAGTCAAGGTCAACCAATACCTGACCAGGTCCATATAGTCAGGATAGACCTCATCAAAAATCTAAAATGTGTAATGTTTTAGGTTTGTAATAAATGTATTGACTGTATATTATGGAAGTGTTGTTATATACCTGCAATCATGACTTTCAGGAGGGGTAGCCCTTTTCTCAGCATTGTAGCATATTCTGCATTTTCTGCATCGAACATCATAGTTCAACACCTTTCCGGTTTTATTTCCAATCAATGTACTGTATCCTACAAAATTTGAAT
Unaligned ( gi|8 ): ATGTTTTAGGTTTGTAATAAATGTATTTAATGTATATTACAGAAGTGTTGTTACAAACCTGCAATCATGACTTTCAGGAGGGGTTGCCCTTTTCTCAGCATTGTAGCATATTCTGCATTTTCTGCATCGAACATCATAGTTCAGCACCTTTCCGGTTTTTATCTCCAATCAATGTACTGTGTCCTACCAAATTGAA
Unaligned ( gi|9 ): CTGATCATTCAATAAAGCAGTTATTGAATTTTGATGAGGTCTACTTCAGTGACCTATATCAGAACCGGTCAGTATTCAGTGGACCAAACACTGTAGATATGGAGGCGACTCAAATCTGACAGGTGCAATATCAGCA
Unaligned ( gi|10 ): ACAATTACTGAATTTCGATTAGGTCTACTCGTGCATATACGGACCTGGTGCAGGTATTAGTTGGCCGAGACCGAAAACCGAGGATAGCCAAAC
Unaligned ( gi|12 ): ATACAATAAATTGACTTTTAATTGGGTGTGTCCTTGATGATATGGACCTCTGATCAGGTATTGGGTGGCTGAAGGCCAAAGTCAA
Unaligned ( gi|13 ): TTGATCAACCAATGCCTGAACAGGTTCCTGTAGTCATGAGTAGACCTGATCAAAAGTCAATATCAATAGTTGTATAAA
Unaligned ( gi|14 ): TACATGACTTTCGATGAGGTCTACTCTTGGCTATACAGACTTTGTCAGGCAGTGGTTGACCGAGGCCATAGGCTGA
Unaligned ( gi|15 ): AGTTCAACACATTTCCGGTTTTATTTCCAATCAATGTACTG
Alignments
lowQualScore : 11111111111111111111111111111111
lowQualScore : 11 2 1111 111 6666666666666666666666666666666666 11111111 1 222 1111 111111111 1111 1 111 11 11 11 777777777777 222 11 1 1 11 11 1 1 00000000000000000000000000000000 1 1 111 1 5555555 222 11 1 44444444444444444 222 11 222 11 1 22222 1 1 11 1 2222 66666666666666666666666666 1 3333 11 11 1 111 22222222 4444444444444 666666666666666666 1 1 1 11 111 111 333333333 111 4444444444444444 333333333333333 222222 222222222222222 4444444444444 11 222222222 1111111 22222222222 111 1111 333333333 11 444444444444 1111 1 1 11 1 11 1 11 1 11 1 1 333333 1 11111111 1 11 11 22222 1 11 11 1 111 1 1 22
lowQualScore : 88 7 7 0 4444 999 3333333333333333333333333333333333 77777777 0 333 2 7777 888888888 7777 3 777 7 88 0 88 44 555555555555 6 444 7 11 3 3 55 88 7 3 3 00000000000000000000000000000000 3 7 3 3 777 3 0000000 111 44 1 3 7 6 0 99999999999999999 6 333 44 888 33 3 6 88888 3 3 7 88 3 8888 7 55555555555555555555555555 7 3 0000 33 33 0 111 22222222 2 0000000000000 111111111111111111 0 0 0 11 8 444 444 88 8 8 8 8 1 000000000 444 0 0 6666666666666666 333333333333333 6 99 6 6 99 888888 000000000000000 6 3333333333333 6 3 55 666666666 6 99 3 99 4444444 6 22222222222 6 111 6 6 99 6 99 6 6 99 4444 222222222 8 11 0 8 8 8 1 888888888888 8 7777 0 0 0 33 2 0 33 0 0 33 0 33 0 9 0 111111 3 0 77777777 0 33 6 33 55555 0 33 3 33 0 777 2 0 0 99
lowQualScore : .. . . . .... ... .................................. ........ . ... . .... ......... .... . ... . .. . .. .. ............ . ... . .. . . .. .. . . . ................................ . . . . ... . ....... ... .. . . . . . ................. . ... .. ... .. . . ..... . . . .. . .... . .......................... . . .... .. .. . ... ........ . ............. .................. . . . .. . ... ... .. . . . . . ......... ... . . ................ ............... . .. . . .. ...... ............... . ............. . . .. ......... . .. . .. ....... . ........... . ... . . .. . .. . . .. .... ......... . .. . . . . . ............ . .... . . . .. . . .. . . .. . .. . . . ...... . . ........ . .. . .. ..... . .. . .. . ... . . . ..
lowQualScore : 00 3 3 0 8888 000 2222222222222222222222222222222222 55555555 0 222 5 0000 000000000 0000 3 777 3 33 7 33 00 333333333333 7 333 3 33 3 3 77 33 3 3 3 77777777777777777777777777777777 3 3 7 3 777 3 3333333 333 33 0 3 3 7 7 77777777777777777 7 333 77 000 33 3 7 77777 3 3 3 33 3 3333 3 00000000000000000000000000 3 3 7777 88 88 0 000 22222222 5 2222222222222 555555555555555555 0 0 0 00 0 000 000 88 0 0 0 0 4 000000000 222 8 8 0000000000000000 777777777777777 7 22 7 7 22 333333 000000000000000 7 3333333333333 7 2 88 000000000 7 22 7 22 3333333 7 00000000000 7 777 7 7 22 7 22 7 7 22 2222 000000000 0 00 8 0 0 0 0 000000000000 0 0000 8 0 0 88 5 0 88 2 0 88 0 88 0 8 0 555555 2 0 22222222 0 88 5 88 00000 0 88 2 88 0 555 0 0 0 00
consensus : NTAAACAAACTCTACAAAAATATCAAT-TAAA-A--TAATTCTTATTTCAGAATA-------------TGCCCA------CG-------GTATTGAC-AAAGATA-TCTTCAAGAGT-A-ACGTGTA----CATTTATTT---TATAC-CTG----AAAAGCTGTTATACA-CAT-T-ACAATGTTGAGGAG--GTTGGACACGTGCT--ACACATATTACAACATATATC-----------ATGGTGCCCTT-AGTATAAAACAT-CCA-CCTCCCCCAG--CAATAAAGT-TGCATATGATAATTA-TTTACAATATA-AACA--T-ATGCC--GGC-A-AATG---CGATT-AAAAGAAATTTTTCGAA-TAA-A-TATAAATAA-ACAC------ATTAGA-AA-NATANTG-TAATATCTTTTCGGAA---ANG-CATG-C--ACAAAACG---AGATTAATTAGT-TGCAGGCAG-GCGTCCAGGT-TNT-TGT-GA-AGAAA--TTGCA-CT----TAAACAC-------AG--CAGAC--ACT-----AAAGG-TGTGA---TTTA--CCT--ATG-G-T-TTG---C-T--TGAATGAT-C--A-----A-TTGATGT----------GGTT----AA-AT-GA-AAATG--ATTCACA-ACAC---CT---GGCTCAT-AGTTT-A-TGCACA-A-AAATT--------NATGTTA--CAGTGATTTTTAAAAATA-------------TTACCAC---A-A---------TG-T--A-TAA-TATG--CTTC------CCAA---T----CCA--TTAA-TG-------------TCTTTCT-TGAACA--CAG--T------TGAAT-AACT--GCAGTGTCCT--TCCAC--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----TAC---------ACCC-AACTC--TACAATCCTTCT-ACCCT-C-TCTNC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGACCA-TCC--TTTTCACA-ATAAAT--AC-CGTCGCCA--TCACT-ATCATCG-TC-AC---CTGTCA-GACCA-C-C--ATGG-TTCATGTCACATGCA--TGTTCCGTACG--TGAATA-----CGTATGGTC-AAGACTGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGCGATT-ATTTTTCAGGACTTGGAA-AACTTGTTCG-AAAGTTATTTTTG
Reference ( family-5070 ) : NTAAACAAACTCTACAAAAATATCAAT-TAAA-A--TAATTCTTATTTCAGAATA-------------TGCCCA------CG-------GTATTGAC-AAAGATA-TCTTCAAGAGT-A-ACGTGTA----CATTTATTT---TATAC-CTG----AAAAGCTGTTATACA-CAT-T-ACAATGTTGAGGAG--GTTGGACACGTGCT--ACACATATTACAACATATATC-----------ATGGTGCCCGT-AGTATAAAATAT-CCA-CCTCCCCCAG--CAATAAAGT-TGCATATGATAATTA-TTTACAATATAAAACA--TTATGCC--GGCTACAATG---CGATT-AAAAGAAATTTTTCGAA-TAA-A-TATAAATAA-ACAC------ATTAGA-AA-NATANTG-TAATATCTTTTCGGAA---AGGCCATG-C--GCAAAACG---AGATTAATTAGT-TGCAGGCAG-GCGTCCAGGT-TGT-TGT-GA-AGAAA--TTGCA-CT----TAAACAC-------AG--CAGAC--ACT-----AAAGG-TGTGA---TTTA--CCT--ATG-G-T-TTG---C-T--TGAATGAT-C--A-----A-TTGATGT----------GGTT----AA-AT-GA-AAATG--ATTCACA-ACAC---CT---GGCTCAT-AGTTT-A-TGCACA-A-AAATT--------NATGTTA--CAGTGATTTTTAAAAATA-------------TTACCAC---A-A---------TG-T--A-TAA-TATG--CTTC------CCAA---T----CCA--TTAA-TG-------------TCTTTCT-TGAACA--CAG--T------TGAAT-AACT--GCAGTGTCCT--TCCAC--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----TAC---------ACCC-AACTC--TACAATCCTTCT-ACCCT-C-TCTNC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGACCA-TCC--TTTTCACA-ATAAAT--AC-CGTCGCCA--TCACT-ATCATCG-TC-AC---CTGTCA-GACCA-C-C--ATGG-TTCATGTCACATGCA--TGTTCCGTACG--TGAATA-----CGTATGGTC-AAGACTGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGCGATT-ATTTTTCAGGACTTGGAA-AACTTGTTCG-AAAGTTATTTTTG
gi|1 : TAAACAAACTCTACAAAAATATCAAT-TAAA-A--TAATT-TTATTTCAGAATA-------------TGCCCA------CG-------ATATTGAC-AA-GATA-TCTTCAAGAGT-ATACGTGTA----CATTTATTT---TATACTCTG----AAAAGCTGTTATACA-CAT-T-ACAATGTTGAGGAG--GTTGGACACATGCT--ACACATATTACAACATATAT------------ATGGTGCCCGTAAGTATAAA--AT-CCA-CCTCCTCCAG--CAATAAAGTCTGCATATGATAATTATTTTACAATATAAAACACTTTATGCCTGGGCTACAATGGAACGATTCAAAAGAAATTTTTGAAA-TAA-A-TATAAATAA-ACAT------ATTAAAGAA-AATCTTG-TAATATCTTTTTGGAA---ACG-CATGCC--ATAAAACG---AGA-TAATTAGTCTGCAGGCAGTGCGTCCAGGTGTTT-TGTCGACAGAAAATTTGAATCT----TAAACAC-------AG--CAGACGGAC-------AAGG-TGTGA----TTA--CCT--ATG-G-T-ATG---CAT--TGAATGATCC--A-----ACTTGATGT----------GGTT----AAGATGGA-AAATG--ATTCACA-ACAC---CT---GGCTCAT-AGTTTAA-TTCACA-A-AAATT--------GATGTTA--CAGTGATTTTTAAAAATA-------------GTACCAC---A-A---------TGAT--A-TAATTATG--CTTTGCCTTACTAA---TAATCCCA--T--A-TG-------------TCTTTCT-TGAACAC-CAG--TG-----TGAATAAACT--GCAATGTCTTCGCCCAC--A----CT-T-----AT----CAACATC----T-TT-TG--C-AGA--TTGGA-A-GCACCAA----TA
gi|11 : agctcttgtaatccaacgttttgattcttaagatctttgatcatgtcaacgatcatatccggcttcatcgactttgcagatccttcctagtttctcctgtaaaatatgataatttgaaagttttatacccttgtcatgaaatatccaggacatatatatagtattaggtttttttgtcttctgtcatgnnnnnnnnnnnnnnnnnnnnnnnnnatacagctaaactatatggtactatccatctcaacaatgcaagagattttgactttggatatatattcgccattgatatatttggttcagggggacggtatgtcgtacttgtacataatatatacatattgtgttgtttgaaaaaattcccgattattgaaataaataaagttatagacttttgattttcggcccatctgtggactaacagacctggtcagtattggtatgaccaaagcaaagtctgaggtcaaccaattacttgacagtctgtatgagtcggatagatccttatcaatgtctaaattgtgtaatgttttagtttgtaataaatgtaatttacatattttatgtatttaacagaaggtgttgttaacaaacctgcaacatagacttttcaggaggggttgccccttcttctgcaaggcattgtagagcatattctcgcagcctggttttctggcatcggaacatcatagaatcctttcagcacctttcccggttgtttatctccatatcaacctgtactgtgtgagtccccaaattgaatag-TAAA-A--TAATTCT-ATTTCAGAATA-------------TGCCCA------CG-------GTATTG----AAAATA-TCTTCAAGAGT---ATGTGTA----CATTTATTT-----TAC-CTG----AAAAGCTGTTATA
gi|16 : A----CATTTATTT---TA--C-CTG----AAAAGCTGTTATA
gi|2 : TACAGAATT-TCAATATAAA-AAATACCTCTCATTTAAGAATACCCATTCATCCAGTGCCCATATGTACGCCACTAAGTATT-AT-AAA--TA-TCTTCAAGAGT-A-ACGT-TATGATCATTTATTCCTCTCTACGCTGTTTAAAAAGCTGTTTTACA-CATGT-GTCATGTTA--GAGCCGTTGGGTACGTCCCTGACACATAAAATAA-ATATATTTGTAGAATTATATGGTGGCCTT---T-TGAAATATATCA-CCTCG---AGGGCAATAA-GT-TGCAAATGGAAATTA-TTTACAAT---------------------------------GATA-AAAAGAATTGTTCCGAG-TAATA-TATTAATAATACCCATGTAAATTAGG-AATTATAGTGTTAACAT-TTTTCGGAAAAGAAGCCATA-CTGACAAAACGCCAGGATTAATTAG--TGCA-GCAG-GTGT-CAGGT-TATATGT-GA-AG-AA--TTGCA-CTTCCCTAAACACCCCCGTTAGTTTATAC--ACTACCCAAAAGGATGTAAGTTTTTACTCCT--ATGTGTT-TTG---C-TAATGAATGAA-CCTA-----A--TGATGTATAGAAAGACAGTTTAAGAA-AT-GATAAATGAAATTCACACCCACTGACTAGAGACTCATAAGTTT-ATTGCACA-ATTAATTATGACCCCCATGTTACTCAGTGA-TTTTAAAAGTAAATCCCCTTGATCTTACCACCATA-AATGATGATGTG-T--ATTAA-TATG--CTTC------CCAAACTT----CCATTTTAA-TGATGTTCATATAGTTCTGTAT-TGA--G--CAG--TTGAGAGTGAAT-AACT--GCAGTGT-CT--TCCACCTATCTCCT-TTTAGAATAGTGC-ACACC-CATTGTC-TGACC-AGA--TTGGA-AGG--CCAA----TAA---------TCCCGAACTCTTTAAAATCCTTGTGACCCTGCGTCTACTTCATCAA----ATCG-ATTAAATT----CCCG-TTAT
gi|3 : gttttaggtttgtaataaatgtattgactgtatattatggaagtgttacattcctgcaatcatgactttcaggagggtggccctatttctcagcattgtagcattttctgcatcgaacatcaatagttcaacatctccggtttaatctccaatagcaatgtactgtgtctcaaaatttgaatacacaTAAACAA--TC-ACAAAAATATCAATCTAAATA--TAATT--TATTTCAGAATA-------------TGCC-A-------G-------ATATTGACCAAGGATAATCTTCAAGAGTTA-GCGTGTA----CATTTATTT---TATAC-CTG----AAAAGCTGTTATACATCAT-TTACAATGTTGAGGAG--GGTGGACACATGCT--ACACATATTACA-CATATATC-----------ATGGTGCCGTT-AATATAAAACAT-CCAACCTCCCTCAG--CAATAAAGT-TGCATATGATAATTA-TTTACAATATATAACA--T-ATGCT--GGC-A-AATG---CGATT-AA--GAAATTTTTTGAAATAA-AATATAAATAA-ACA--------TTA-A-AA-CATACTG-TA-TATCTTTTTGGAA---AG--CATG-C----AAAA-G---AGAT-AATTAGT--GCAG-CAG-GCGTCCAGGT--GT-TGT-GA-AGAAA--TTGCA-CT----TAA-CAC-------AG--CAGA---ACT-----AA-GG-TGTGA---TTTA--CCT--ATG-G-T-TTG---C-T--TGAATGAT-G--A-----A-TTGATGT----------GGT-----AA-AT-GA-AAATG--ATTCACA-ACAC---CT---GGCTCAT-AGTTT-A-TGCACA-A-AAATT--------GATGTTA--CAGTGATTTTTAAAAATA-------------GTACCAC---A-A---------TG-T--A-TAA-TATG--CTTC------CTAA---T----CCA--T-AA-TG-------------TCTTTCT-TGAACA--CAG--T------TGAAT-AACT--GCAATGTCCT--TCCAC--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----TAC---------ACCC-AACTC--TACAATCCTTGT-ACCCT-C-TCTAC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGGTCA-TCC--TTTTCATA-ATAAAT--AC-CGTCGCCA--TCACT-ATCATCG-TC-TCGTACTGTCA-GACCA-CAC--ATGG-TTCATGTCACATGCA--TGTTCCGTACG--TGAATA-----CGTATGGTC-AAGACAGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGTGATT-ATTTTTCAGGACTTGGAA-AACTTGTTCA-AAAGTTAGTTTTG
gi|4 : tTTA--CCTTTATG-G-TGTTGTTCC-T--T-AATGAT-C--ATGAGTA-TAGCTGT----------GG------AA-AT-GA-AAATG--ATTCACA-ACA----CT---GGCTCAT--CTTT-A-TGCACACA-AAAAT--------TATGTTA---AGTGATTTTT-AAAATA-------------T--CCACT--ATA---------TG-TTCA-TAA-TAGGTTCTTCAT----CCAA---T-----CA--TTAACTGT------------TCTTTCTCTGACTAGCCAGTAT------TG-AT-AACTTGACA--GTCCT--TCC-C--A----CTCT-----GTC---C-ATATCAC-TT-TCGTA--CAAGATTTTAGACA-A--CCAAGGACTACCAGTCATAAACTC-AATTT--TACAA-CCTTCT-ACCCT-C-TCTTCCGT----ATAATATCATTTTAAATTTTCCTCTGC-TATATCTCGTCAATCGAATTGGCTCCAACACT-GACCAGTCCTTTTTTCACACATAAATTAACTTGTCGCGATTTCACTAATCCACG-TCTAT---CTATCAGGACTA-C-CATATGGTTTCATGTCACATGCATTTTTTCC-TACGTTTGCATATTTATCTCATGGTCTAAGACTGAAAATCA-TAAGTAATTTAAATTAATTCTTAATTTTACTGCAATTCATTTTTCAGGACTTGGAACAACTTTGACGAAAAGTTATTCTT
gi|5 : --ATTCACA-ACAC---CT---GGCTCAT-AGTTT-A-TGCAAA-A-AAAAT--------TATGTTA--TAGTGATTTTTAAAAATA-------------TTCCCAC---A-A---------TG-T--A-TAA-TATG--CTTC------CCAA---T----CCA--T-AA-TG-------------TCTTTCC-TGAACA--CCG--T------TGAAT-AATT--GCAGTGTCCT--TCCAT--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----GAC---------ACCG-AATTC--TACAATCCTTCT-ACCCT-C-TCTCC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGACCA-TCC--TTTTCACA-ATAAAT--AC-CGTCGCCA--TCACT-ATCATCG-TC-A----CTGTCA-GACCACC-C--ATGG-TTCATGTCACATGTA--TGTTCCGTACG--TGAATA-----CGTATGATC-AAGACTGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGCAATT-ATTTTTCAGGACTTGGAA-AACTTGTTC--AAAGTTATTTTTGtacgaaatcgtgaatctaactcaccactg
gi|6 : CAC---A-A---------TG-T--A-TAA-CATG--CTTC------CCAA---T----CC---TTAA-TG-------------TCTTTCC-TGAACA--CAG--T------TGAAT-AACT--GCAGTGCCCT--TCAAC--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----GAC---------ACCC-AACTC--TACAATCCTTCT-ACCCT-C-TCTCC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGACCA-TCC--TTTTCAGA-ATGAAT--AG-TGTCGCCA--TCACT-ATCA--GACC-AC---CTG----GGC---C-C--ATGG-TGCATGTCACATGCA--TGTTCCATACG--TGAATA-----CGTATGGTC-AAGACTGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGCAATT-ATTTTTCGGGACTTTGAA-AACTTGTTC--AAAGTTATTTTTGatagcatataatctgctcaccagctg
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TACTGAATAAATAAGTTATAGACTTTTGATTTCGGCCCATCTGTGACTATACAGACCTGGTCAGGTATTGGTTGACCGAAGCAAAGTCAAGGTCAACCAATACCTGACCAGGTCCATATAGTCAGGATAGACCTCATCAAAAATCTAAAATGTGTAATGTTTTAGGTTTGTAATAAATGTATTGACTGTATATTATGGAAGTGTTGTTATATACCTGCAATCATGACTTTCAGGAGGGGTAGCCCTTTTCTCAGCATTGTAGCATATTCTGCATTTTCTGCATCGAACATCATAGTTCAACACCTTTCCGGTTTTATTTCCAATCAATGTACTGTATCCTACAAAATTTGAAT
Unaligned ( gi|8 ): ATGTTTTAGGTTTGTAATAAATGTATTTAATGTATATTACAGAAGTGTTGTTACAAACCTGCAATCATGACTTTCAGGAGGGGTTGCCCTTTTCTCAGCATTGTAGCATATTCTGCATTTTCTGCATCGAACATCATAGTTCAGCACCTTTCCGGTTTTTATCTCCAATCAATGTACTGTGTCCTACCAAATTGAA
Unaligned ( gi|9 ): CTGATCATTCAATAAAGCAGTTATTGAATTTTGATGAGGTCTACTTCAGTGACCTATATCAGAACCGGTCAGTATTCAGTGGACCAAACACTGTAGATATGGAGGCGACTCAAATCTGACAGGTGCAATATCAGCA
Unaligned ( gi|10 ): ACAATTACTGAATTTCGATTAGGTCTACTCGTGCATATACGGACCTGGTGCAGGTATTAGTTGGCCGAGACCGAAAACCGAGGATAGCCAAAC
Unaligned ( gi|12 ): ATACAATAAATTGACTTTTAATTGGGTGTGTCCTTGATGATATGGACCTCTGATCAGGTATTGGGTGGCTGAAGGCCAAAGTCAA
Unaligned ( gi|13 ): TTGATCAACCAATGCCTGAACAGGTTCCTGTAGTCATGAGTAGACCTGATCAAAAGTCAATATCAATAGTTGTATAAA
Unaligned ( gi|14 ): TACATGACTTTCGATGAGGTCTACTCTTGGCTATACAGACTTTGTCAGGCAGTGGTTGACCGAGGCCATAGGCTGA
Unaligned ( gi|15 ): AGTTCAACACATTTCCGGTTTTATTTCCAATCAATGTACTG
Alignments
lowQualScore : 111111111111111111111111111111111
lowQualScore : 11 2 1111 111 6666666666666666666666666666666666 11111111 1 222 1111 111111111 1111 1 111 11 11 11 777777777777 222 11 1 1 11 11 1 1 000000000000000000000000000000000 1 1 111 1 5555555 222 11 1 333333 222222 222 11 222 11 1 22222 1 1 11 1 2222 66666666666666666666666666 1 3333 11 11 1 111 22222222 4444444444444 666666666666666666 1 1 1 11 111 111 333333333 111 4444444444444444 333333333333333 222222 222222222222222 4444444444444 11 222222222 1111111 22222222222 111 1111 333333333 11 444444444444 1111 1 1 11 1 11 1 11 1 11 1 1 333333 1 11111111 1 11 11 22222 1 11 11 1 111 1 1 22
lowQualScore : 88 7 7 0 4444 999 3333333333333333333333333333333333 77777777 0 333 2 7777 888888888 7777 3 777 7 88 0 88 44 555555555555 444 7 11 3 3 55 88 7 3 3 555555555555555555555555555555555 3 7 3 3 777 3 0000000 111 44 1 3 7 6 0 222222 444444 6 333 44 888 33 3 6 66666 3 3 7 88 3 8888 7 55555555555555555555555555 7 3 0000 33 33 0 111 22222222 2 0000000000000 111111111111111111 0 0 0 11 8 444 444 88 8 8 8 8 1 000000000 444 0 0 6666666666666666 333333333333333 6 99 6 6 99 888888 000000000000000 6 3333333333333 6 3 55 666666666 6 99 3 99 4444444 6 22222222222 6 111 6 6 99 6 99 6 6 99 4444 222222222 8 11 0 8 8 8 1 888888888888 8 7777 0 0 0 33 2 0 33 0 0 33 0 33 0 9 0 111111 3 0 77777777 0 33 6 33 55555 0 33 3 33 0 777 2 0 0 99
lowQualScore : .. . . . .... ... .................................. ........ . ... . .... ......... .... . ... . .. . .. .. ............ ... . .. . . .. .. . . . ................................. . . . . ... . ....... ... .. . . . . . ...... ...... . ... .. ... .. . . ..... . . . .. . .... . .......................... . . .... .. .. . ... ........ . ............. .................. . . . .. . ... ... .. . . . . . ......... ... . . ................ ............... . .. . . .. ...... ............... . ............. . . .. ......... . .. . .. ....... . ........... . ... . . .. . .. . . .. .... ......... . .. . . . . . ............ . .... . . . .. . . .. . . .. . .. . . . ...... . . ........ . .. . .. ..... . .. . .. . ... . . . ..
lowQualScore : 00 3 3 0 8888 000 2222222222222222222222222222222222 55555555 0 222 5 0000 000000000 0000 3 777 3 33 7 33 00 333333333333 333 3 00 3 3 77 33 3 3 3 777777777777777777777777777777777 3 3 7 3 777 3 3333333 333 33 0 3 3 7 7 333333 777777 7 333 77 000 33 3 7 00000 3 3 3 33 3 3333 3 00000000000000000000000000 3 3 7777 88 88 0 000 22222222 5 2222222222222 555555555555555555 0 0 0 00 0 000 000 88 0 0 0 0 4 000000000 222 8 8 0000000000000000 777777777777777 7 22 7 7 22 333333 000000000000000 7 3333333333333 7 2 88 000000000 7 22 7 22 3333333 7 00000000000 7 777 7 7 22 7 22 7 7 22 2222 000000000 0 00 8 0 0 0 0 000000000000 0 0000 8 0 0 88 5 0 88 2 0 88 0 88 0 8 0 555555 2 0 22222222 0 88 5 88 00000 0 88 2 88 0 555 0 0 0 00
consensus : NTAAACAAACTCTACAAAAATATCAAT-TAAA-A--TAATTCTTATTTCAGAATA-------------TGCCCA------CG-------GTATTGAC-AAAGATA-TCTTCAAGAGT-A-ACGTGTA----CATTTATTT---TATAC-CTG----AAAAGCTGTTATACA-CAT-T-ACAATGTTGAGGAG--GTTGGACACGTGCT--ACACATATTACAACATATATC-----------ATGGTGCCCTT-AGTATAAAACAT-CCA-CCTCCCCCAG--CAATAAAGT-TGCATATGATAATTA-TTTACAATAT-A-AACA---TATGCC--GGC-A-AATG---CGATT-AAAAGAAATTTTTCGAA-TAA-A-TATAAATAA-ACAC------ATTAGA-AA-NATANTG-TAATATCTTTTCGGAAA-G----CATG-C--ACAAAACG---AGATTAATTAGT-TGCAGGCAG-GCGTCCAGGT-TNT-TGT-GA-AGAAA--TTGCA-CT----TAAACAC-------AG--CAGAC--ACT-----AAAGG-TGTGA---TTTA--CCT--ATG-G-T-TTG---C-T--TGAATGAT-C--A-----A-TTGATGT----------GGTT----AA-AT-GA-AAATG--ATTCACA-ACAC---CT---GGCTCAT-AGTTT-A-TGCACA-A-AAATT--------NATGTTA--CAGTGATTTTTAAAAATA-------------TTACCAC---A-A---------TG-T--A-TAA-TATG--CTTC------CCAA---T----CCA--TTAA-TG-------------TCTTTCT-TGAACA--CAG--T------TGAAT-AACT--GCAGTGTCCT--TCCAC--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----TAC---------ACCC-AACTC--TACAATCCTTCT-ACCCT-C-TCTNC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGACCA-TCC--TTTTCACA-ATAAAT--AC-CGTCGCCA--TCACT-ATCATCG-TC-AC---CTGTCA-GACCA-C-C--ATGG-TTCATGTCACATGCA--TGTTCCGTACG--TGAATA-----CGTATGGTC-AAGACTGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGCGATT-ATTTTTCAGGACTTGGAA-AACTTGTTCG-AAAGTTATTTTTG
Reference ( family-5070 ) : NTAAACAAACTCTACAAAAATATCAAT-TAAA-A--TAATTCTTATTTCAGAATA-------------TGCCCA------CG-------GTATTGAC-AAAGATA-TCTTCAAGAGT-A-ACGTGTA----CATTTATTT---TATAC-CTG----AAAAGCTGTTATACA-CAT-T-ACAATGTTGAGGAG--GTTGGACACGTGCT--ACACATATTACAACATATATC-----------ATGGTGCCCTT-AGTATAAAACAT-CCA-CCTCCCCCAG--CAATAAAGT-TGCATATGATAATTA-TTTACAATAT-A-AACA---TATGCC--GGC-A-AATG---CGATT-AAAAGAAATTTTTCGAA-TAA-A-TATAAATAA-ACAC------ATTAGA-AA-NATANTG-TAATATCTTTTCGGAAANG----CATG-C--ACAAAACG---AGATTAATTAGT-TGCAGGCAG-GCGTCCAGGT-TNT-TGT-GA-AGAAA--TTGCA-CT----TAAACAC-------AG--CAGAC--ACT-----AAAGG-TGTGA---TTTA--CCT--ATG-G-T-TTG---C-T--TGAATGAT-C--A-----A-TTGATGT----------GGTT----AA-AT-GA-AAATG--ATTCACA-ACAC---CT---GGCTCAT-AGTTT-A-TGCACA-A-AAATT--------NATGTTA--CAGTGATTTTTAAAAATA-------------TTACCAC---A-A---------TG-T--A-TAA-TATG--CTTC------CCAA---T----CCA--TTAA-TG-------------TCTTTCT-TGAACA--CAG--T------TGAAT-AACT--GCAGTGTCCT--TCCAC--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----TAC---------ACCC-AACTC--TACAATCCTTCT-ACCCT-C-TCTNC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGACCA-TCC--TTTTCACA-ATAAAT--AC-CGTCGCCA--TCACT-ATCATCG-TC-AC---CTGTCA-GACCA-C-C--ATGG-TTCATGTCACATGCA--TGTTCCGTACG--TGAATA-----CGTATGGTC-AAGACTGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGCGATT-ATTTTTCAGGACTTGGAA-AACTTGTTCG-AAAGTTATTTTTG
gi|1 : TAAACAAACTCTACAAAAATATCAAT-TAAA-A--TAATT-TTATTTCAGAATA-------------TGCCCA------CG-------ATATTGAC-AA-GATA-TCTTCAAGAGT-ATACGTGTA----CATTTATTT---TATACTCTG----AAAAGCTGTTATACA-CAT-T-ACAATGTTGAGGAG--GTTGGACACATGCT--ACACATATTACAACATATAT------------ATGGTGCCCGTAAGTATAAA--AT-CCA-CCTCCTCCAG--CAATAAAGTCTGCATATGATAATTATTTTACAATATAA-AACACTTTATGCCTGGGCTACAATGGAACGATTCAAAAGAAATTTTTGAAA-TAA-A-TATAAATAA-ACAT------ATTAAAGAA-AATCTTG-TAATATCTTTTTGGAAACG----CATGCC--ATAAAACG---AGA-TAATTAGTCTGCAGGCAGTGCGTCCAGGTGTTT-TGTCGACAGAAAATTTGAATCT----TAAACAC-------AG--CAGACGGAC-------AAGG-TGTGA----TTA--CCT--ATG-G-T-ATG---CAT--TGAATGATCC--A-----ACTTGATGT----------GGTT----AAGATGGA-AAATG--ATTCACA-ACAC---CT---GGCTCAT-AGTTTAA-TTCACA-A-AAATT--------GATGTTA--CAGTGATTTTTAAAAATA-------------GTACCAC---A-A---------TGAT--A-TAATTATG--CTTTGCCTTACTAA---TAATCCCA--T--A-TG-------------TCTTTCT-TGAACAC-CAG--TG-----TGAATAAACT--GCAATGTCTTCGCCCAC--A----CT-T-----AT----CAACATC----T-TT-TG--C-AGA--TTGGA-A-GCACCAA----TA
gi|11 : agctcttgtaatccaacgttttgattcttaagatctttgatcatgtcaacgatcatatccggcttcatcgactttgcagatccttcctagtttctcctgtaaaatatgataatttgaaagttttatacccttgtcatgaaatatccaggacatatatatagtattaggtttttttgtcttctgtcatgnnnnnnnnnnnnnnnnnnnnnnnnnatacagctaaactatatggtactatccatctcaacaatgcaagagattttgactttggatatatattcgccattgatatatttggttcagggggacggtatgtcgtacttgtacataatatatacatattgtgttgtttgaaaaaattcccgattattgaaataaataaagttatagacttttgattttcggcccatctgtggactaacagacctggtcagtattggtatgaccaaagcaaagtctgaggtcaaccaattacttgacagtctgtatgagtcggatagatccttatcaatgtctaaattgtgtaatgttttagtttgtaataaatgtaatttacatattttatgtatttaacagaaggtgttgttaacaaacctgcaacatagacttttcaggaggggttgccccttcttctgcaaggcattgtagagcatattctcgcagcctggttttctggcatcggaacatcatagaatcctttcagcacctttcccggttgtttatctccatatcaacctgtactgtgtgagtccccaaattgaatag-TAAA-A--TAATTCT-ATTTCAGAATA-------------TGCCCA------CG-------GTATTG----AAAATA-TCTTCAAGAGT---ATGTGTA----CATTTATTT-----TAC-CTG----AAAAGCTGTTATA
gi|16 : A----CATTTATTT---TA--C-CTG----AAAAGCTGTTATA
gi|2 : TACAGAATT-TCAATATAAA-AAATACCTCTCATTTAAGAATACCCATTCATCCAGTGCCCATATGTACGCCACTAAGTATT-AT-AAA--TA-TCTTCAAGAGT-A-ACGT-TATGATCATTTATTCCTCTCTACGCTGTTTAAAAAGCTGTTTTACA-CATGT-GTCATGTTA--GAGCCGTTGGGTACGTCCCTGACACATAAAATAA-ATATATTTGTAGAATTATATGGTGGCCTT---T-TGAAATATATCA-CCTCG---AGGGCAATAA-GT-TGCAAATGGAAATTA-TTTACAAT----------------------------------GATA-AAAAGAATTGTTCCGAG-TAATA-TATTAATAATACCCATGTAAATTAGG-AATTATAGTGTTAACAT-TTTTCGGAAAAGAAGCCATA-CTGACAAAACGCCAGGATTAATTAG--TGCA-GCAG-GTGT-CAGGT-TATATGT-GA-AG-AA--TTGCA-CTTCCCTAAACACCCCCGTTAGTTTATAC--ACTACCCAAAAGGATGTAAGTTTTTACTCCT--ATGTGTT-TTG---C-TAATGAATGAA-CCTA-----A--TGATGTATAGAAAGACAGTTTAAGAA-AT-GATAAATGAAATTCACACCCACTGACTAGAGACTCATAAGTTT-ATTGCACA-ATTAATTATGACCCCCATGTTACTCAGTGA-TTTTAAAAGTAAATCCCCTTGATCTTACCACCATA-AATGATGATGTG-T--ATTAA-TATG--CTTC------CCAAACTT----CCATTTTAA-TGATGTTCATATAGTTCTGTAT-TGA--G--CAG--TTGAGAGTGAAT-AACT--GCAGTGT-CT--TCCACCTATCTCCT-TTTAGAATAGTGC-ACACC-CATTGTC-TGACC-AGA--TTGGA-AGG--CCAA----TAA---------TCCCGAACTCTTTAAAATCCTTGTGACCCTGCGTCTACTTCATCAA----ATCG-ATTAAATT----CCCG-TTAT
gi|3 : gttttaggtttgtaataaatgtattgactgtatattatggaagtgttacattcctgcaatcatgactttcaggagggtggccctatttctcagcattgtagcattttctgcatcgaacatcaatagttcaacatctccggtttaatctccaatagcaatgtactgtgtctcaaaatttgaatacacaTAAACAA--TC-ACAAAAATATCAATCTAAATA--TAATT--TATTTCAGAATA-------------TGCC-A-------G-------ATATTGACCAAGGATAATCTTCAAGAGTTA-GCGTGTA----CATTTATTT---TATAC-CTG----AAAAGCTGTTATACATCAT-TTACAATGTTGAGGAG--GGTGGACACATGCT--ACACATATTACA-CATATATC-----------ATGGTGCCGTT-AATATAAAACAT-CCAACCTCCCTCAG--CAATAAAGT-TGCATATGATAATTA-TTTACAATAT-ATAACA---TATGCT--GGC-A-AATG---CGATT-AA--GAAATTTTTTGAAATAA-AATATAAATAA-ACA--------TTA-A-AA-CATACTG-TA-TATCTTTTTGGAAA-G----CATG-C--A--AAA-G---AGAT-AATTAGT--GCAG-CAG-GCGTCCAGGT--GT-TGT-GA-AGAAA--TTGCA-CT----TAA-CAC-------AG--CAGA---ACT-----AA-GG-TGTGA---TTTA--CCT--ATG-G-T-TTG---C-T--TGAATGAT-G--A-----A-TTGATGT----------GGT-----AA-AT-GA-AAATG--ATTCACA-ACAC---CT---GGCTCAT-AGTTT-A-TGCACA-A-AAATT--------GATGTTA--CAGTGATTTTTAAAAATA-------------GTACCAC---A-A---------TG-T--A-TAA-TATG--CTTC------CTAA---T----CCA--T-AA-TG-------------TCTTTCT-TGAACA--CAG--T------TGAAT-AACT--GCAATGTCCT--TCCAC--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----TAC---------ACCC-AACTC--TACAATCCTTGT-ACCCT-C-TCTAC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGGTCA-TCC--TTTTCATA-ATAAAT--AC-CGTCGCCA--TCACT-ATCATCG-TC-TCGTACTGTCA-GACCA-CAC--ATGG-TTCATGTCACATGCA--TGTTCCGTACG--TGAATA-----CGTATGGTC-AAGACAGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGTGATT-ATTTTTCAGGACTTGGAA-AACTTGTTCA-AAAGTTAGTTTTG
gi|4 : tTTA--CCTTTATG-G-TGTTGTTCC-T--T-AATGAT-C--ATGAGTA-TAGCTGT----------GG------AA-AT-GA-AAATG--ATTCACA-ACA----CT---GGCTCAT--CTTT-A-TGCACACA-AAAAT--------TATGTTA---AGTGATTTTT-AAAATA-------------T--CCACT--ATA---------TG-TTCA-TAA-TAGGTTCTTCAT----CCAA---T-----CA--TTAACTGT------------TCTTTCTCTGACTAGCCAGTAT------TG-AT-AACTTGACA--GTCCT--TCC-C--A----CTCT-----GTC---C-ATATCAC-TT-TCGTA--CAAGATTTTAGACA-A--CCAAGGACTACCAGTCATAAACTC-AATTT--TACAA-CCTTCT-ACCCT-C-TCTTCCGT----ATAATATCATTTTAAATTTTCCTCTGC-TATATCTCGTCAATCGAATTGGCTCCAACACT-GACCAGTCCTTTTTTCACACATAAATTAACTTGTCGCGATTTCACTAATCCACG-TCTAT---CTATCAGGACTA-C-CATATGGTTTCATGTCACATGCATTTTTTCC-TACGTTTGCATATTTATCTCATGGTCTAAGACTGAAAATCA-TAAGTAATTTAAATTAATTCTTAATTTTACTGCAATTCATTTTTCAGGACTTGGAACAACTTTGACGAAAAGTTATTCTT
gi|5 : --ATTCACA-ACAC---CT---GGCTCAT-AGTTT-A-TGCAAA-A-AAAAT--------TATGTTA--TAGTGATTTTTAAAAATA-------------TTCCCAC---A-A---------TG-T--A-TAA-TATG--CTTC------CCAA---T----CCA--T-AA-TG-------------TCTTTCC-TGAACA--CCG--T------TGAAT-AATT--GCAGTGTCCT--TCCAT--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----GAC---------ACCG-AATTC--TACAATCCTTCT-ACCCT-C-TCTCC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGACCA-TCC--TTTTCACA-ATAAAT--AC-CGTCGCCA--TCACT-ATCATCG-TC-A----CTGTCA-GACCACC-C--ATGG-TTCATGTCACATGTA--TGTTCCGTACG--TGAATA-----CGTATGATC-AAGACTGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGCAATT-ATTTTTCAGGACTTGGAA-AACTTGTTC--AAAGTTATTTTTGtacgaaatcgtgaatctaactcaccactg
gi|6 : CAC---A-A---------TG-T--A-TAA-CATG--CTTC------CCAA---T----CC---TTAA-TG-------------TCTTTCC-TGAACA--CAG--T------TGAAT-AACT--GCAGTGCCCT--TCAAC--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----GAC---------ACCC-AACTC--TACAATCCTTCT-ACCCT-C-TCTCC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGACCA-TCC--TTTTCAGA-ATGAAT--AG-TGTCGCCA--TCACT-ATCA--GACC-AC---CTG----GGC---C-C--ATGG-TGCATGTCACATGCA--TGTTCCATACG--TGAATA-----CGTATGGTC-AAGACTGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGCAATT-ATTTTTCGGGACTTTGAA-AACTTGTTC--AAAGTTATTTTTGatagcatataatctgctcaccagctg
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TACTGAATAAATAAGTTATAGACTTTTGATTTCGGCCCATCTGTGACTATACAGACCTGGTCAGGTATTGGTTGACCGAAGCAAAGTCAAGGTCAACCAATACCTGACCAGGTCCATATAGTCAGGATAGACCTCATCAAAAATCTAAAATGTGTAATGTTTTAGGTTTGTAATAAATGTATTGACTGTATATTATGGAAGTGTTGTTATATACCTGCAATCATGACTTTCAGGAGGGGTAGCCCTTTTCTCAGCATTGTAGCATATTCTGCATTTTCTGCATCGAACATCATAGTTCAACACCTTTCCGGTTTTATTTCCAATCAATGTACTGTATCCTACAAAATTTGAAT
Unaligned ( gi|8 ): ATGTTTTAGGTTTGTAATAAATGTATTTAATGTATATTACAGAAGTGTTGTTACAAACCTGCAATCATGACTTTCAGGAGGGGTTGCCCTTTTCTCAGCATTGTAGCATATTCTGCATTTTCTGCATCGAACATCATAGTTCAGCACCTTTCCGGTTTTTATCTCCAATCAATGTACTGTGTCCTACCAAATTGAA
Unaligned ( gi|9 ): CTGATCATTCAATAAAGCAGTTATTGAATTTTGATGAGGTCTACTTCAGTGACCTATATCAGAACCGGTCAGTATTCAGTGGACCAAACACTGTAGATATGGAGGCGACTCAAATCTGACAGGTGCAATATCAGCA
Unaligned ( gi|10 ): ACAATTACTGAATTTCGATTAGGTCTACTCGTGCATATACGGACCTGGTGCAGGTATTAGTTGGCCGAGACCGAAAACCGAGGATAGCCAAAC
Unaligned ( gi|12 ): ATACAATAAATTGACTTTTAATTGGGTGTGTCCTTGATGATATGGACCTCTGATCAGGTATTGGGTGGCTGAAGGCCAAAGTCAA
Unaligned ( gi|13 ): TTGATCAACCAATGCCTGAACAGGTTCCTGTAGTCATGAGTAGACCTGATCAAAAGTCAATATCAATAGTTGTATAAA
Unaligned ( gi|14 ): TACATGACTTTCGATGAGGTCTACTCTTGGCTATACAGACTTTGTCAGGCAGTGGTTGACCGAGGCCATAGGCTGA
Unaligned ( gi|15 ): AGTTCAACACATTTCCGGTTTTATTTCCAATCAATGTACTG
Alignments
lowQualScore : 111111111111111111111111111111111
lowQualScore : 11 2 1111 111 6666666666666666666666666666666666 11111111 1 222 1111 111111111 1111 1 111 11 11 11 777777777777 222 11 1 1 11 11 1 1 000000000000000000000000000000000 1 1 111 1 5555555 222 11 1 4444444 222222 222 11 222 11 1 22222 1 1 11 1 2222 66666666666666666666666666 1 3333 11 11 1 111 22222222 4444444444444 666666666666666666 1 1 1 11 111 111 333333333 111 4444444444444444 333333333333333 222222 222222222222222 4444444444444 11 222222222 1111111 22222222222 111 1111 333333333 11 444444444444 1111 1 1 11 1 11 1 11 1 11 1 1 333333 1 11111111 1 11 11 22222 1 11 11 1 111 1 1 22
lowQualScore : 88 7 7 0 4444 999 3333333333333333333333333333333333 77777777 0 333 2 7777 888888888 7777 3 777 7 88 0 88 44 555555555555 444 7 11 3 3 55 88 7 3 3 555555555555555555555555555555555 3 7 3 3 777 3 0000000 111 44 1 3 7 6 0 2222222 444444 6 333 44 888 33 3 6 66666 3 3 7 88 3 8888 7 55555555555555555555555555 7 3 0000 33 33 0 111 22222222 2 0000000000000 111111111111111111 0 0 0 11 8 444 444 88 8 8 8 8 1 000000000 444 0 0 6666666666666666 333333333333333 6 99 6 6 99 888888 000000000000000 6 3333333333333 6 3 55 666666666 6 99 3 99 4444444 6 22222222222 6 111 6 6 99 6 99 6 6 99 4444 222222222 8 11 0 8 8 8 1 888888888888 8 7777 0 0 0 33 2 0 33 0 0 33 0 33 0 9 0 111111 3 0 77777777 0 33 6 33 55555 0 33 3 33 0 777 2 0 0 99
lowQualScore : .. . . . .... ... .................................. ........ . ... . .... ......... .... . ... . .. . .. .. ............ ... . .. . . .. .. . . . ................................. . . . . ... . ....... ... .. . . . . . ....... ...... . ... .. ... .. . . ..... . . . .. . .... . .......................... . . .... .. .. . ... ........ . ............. .................. . . . .. . ... ... .. . . . . . ......... ... . . ................ ............... . .. . . .. ...... ............... . ............. . . .. ......... . .. . .. ....... . ........... . ... . . .. . .. . . .. .... ......... . .. . . . . . ............ . .... . . . .. . . .. . . .. . .. . . . ...... . . ........ . .. . .. ..... . .. . .. . ... . . . ..
lowQualScore : 00 3 3 0 8888 000 2222222222222222222222222222222222 55555555 0 222 5 0000 000000000 0000 3 777 3 33 7 33 00 333333333333 333 3 00 3 3 77 33 3 3 3 777777777777777777777777777777777 3 3 7 3 777 3 3333333 333 33 0 3 3 7 7 0000000 777777 7 333 77 000 33 3 7 00000 3 3 3 33 3 3333 3 00000000000000000000000000 3 3 7777 88 88 0 000 22222222 5 2222222222222 555555555555555555 0 0 0 00 0 000 000 88 0 0 0 0 4 000000000 222 8 8 0000000000000000 777777777777777 7 22 7 7 22 333333 000000000000000 7 3333333333333 7 2 88 000000000 7 22 7 22 3333333 7 00000000000 7 777 7 7 22 7 22 7 7 22 2222 000000000 0 00 8 0 0 0 0 000000000000 0 0000 8 0 0 88 5 0 88 2 0 88 0 88 0 8 0 555555 2 0 22222222 0 88 5 88 00000 0 88 2 88 0 555 0 0 0 00
consensus : NTAAACAAACTCTACAAAAATATCAAT-TAAA-A--TAATTCTTATTTCAGAATA-------------TGCCCA------CG-------GTATTGAC-AAAGATA-TCTTCAAGAGT-A-ACGTGTA----CATTTATTT---TATAC-CTG----AAAAGCTGTTATACA-CAT-T-ACAATGTTGAGGAG--GTTGGACACGTGCT--ACACATATTACAACATATATC-----------ATGGTGCCCTT-AGTATAAAACAT-CCA-CCTCCCCCAG--CAATAAAGT-TGCATATGATAATTA-TTTACAATAT-A-AACA---TATGCC--GGC-A-AATG---CGATT-AAAAGAAATTTTTCGAA-TAA-A-TATAAATAA-ACAC------ATTAGA-AA-NATANTG-TAATATCTTTTCGGAAA-G-----CATG-C--ACAAAACG---AGATTAATTAGT-TGCAGGCAG-GCGTCCAGGT-TNT-TGT-GA-AGAAA--TTGCA-CT----TAAACAC-------AG--CAGAC--ACT-----AAAGG-TGTGA---TTTA--CCT--ATG-G-T-TTG---C-T--TGAATGAT-C--A-----A-TTGATGT----------GGTT----AA-AT-GA-AAATG--ATTCACA-ACAC---CT---GGCTCAT-AGTTT-A-TGCACA-A-AAATT--------NATGTTA--CAGTGATTTTTAAAAATA-------------TTACCAC---A-A---------TG-T--A-TAA-TATG--CTTC------CCAA---T----CCA--TTAA-TG-------------TCTTTCT-TGAACA--CAG--T------TGAAT-AACT--GCAGTGTCCT--TCCAC--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----TAC---------ACCC-AACTC--TACAATCCTTCT-ACCCT-C-TCTNC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGACCA-TCC--TTTTCACA-ATAAAT--AC-CGTCGCCA--TCACT-ATCATCG-TC-AC---CTGTCA-GACCA-C-C--ATGG-TTCATGTCACATGCA--TGTTCCGTACG--TGAATA-----CGTATGGTC-AAGACTGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGCGATT-ATTTTTCAGGACTTGGAA-AACTTGTTCG-AAAGTTATTTTTG
Reference ( family-5070 ) : NTAAACAAACTCTACAAAAATATCAAT-TAAA-A--TAATTCTTATTTCAGAATA-------------TGCCCA------CG-------GTATTGAC-AAAGATA-TCTTCAAGAGT-A-ACGTGTA----CATTTATTT---TATAC-CTG----AAAAGCTGTTATACA-CAT-T-ACAATGTTGAGGAG--GTTGGACACGTGCT--ACACATATTACAACATATATC-----------ATGGTGCCCTT-AGTATAAAACAT-CCA-CCTCCCCCAG--CAATAAAGT-TGCATATGATAATTA-TTTACAATAT-A-AACA---TATGCC--GGC-A-AATG---CGATT-AAAAGAAATTTTTCGAA-TAA-A-TATAAATAA-ACAC------ATTAGA-AA-NATANTG-TAATATCTTTTCGGAAA-G-----CATG-C--ACAAAACG---AGATTAATTAGT-TGCAGGCAG-GCGTCCAGGT-TNT-TGT-GA-AGAAA--TTGCA-CT----TAAACAC-------AG--CAGAC--ACT-----AAAGG-TGTGA---TTTA--CCT--ATG-G-T-TTG---C-T--TGAATGAT-C--A-----A-TTGATGT----------GGTT----AA-AT-GA-AAATG--ATTCACA-ACAC---CT---GGCTCAT-AGTTT-A-TGCACA-A-AAATT--------NATGTTA--CAGTGATTTTTAAAAATA-------------TTACCAC---A-A---------TG-T--A-TAA-TATG--CTTC------CCAA---T----CCA--TTAA-TG-------------TCTTTCT-TGAACA--CAG--T------TGAAT-AACT--GCAGTGTCCT--TCCAC--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----TAC---------ACCC-AACTC--TACAATCCTTCT-ACCCT-C-TCTNC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGACCA-TCC--TTTTCACA-ATAAAT--AC-CGTCGCCA--TCACT-ATCATCG-TC-AC---CTGTCA-GACCA-C-C--ATGG-TTCATGTCACATGCA--TGTTCCGTACG--TGAATA-----CGTATGGTC-AAGACTGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGCGATT-ATTTTTCAGGACTTGGAA-AACTTGTTCG-AAAGTTATTTTTG
gi|1 : TAAACAAACTCTACAAAAATATCAAT-TAAA-A--TAATT-TTATTTCAGAATA-------------TGCCCA------CG-------ATATTGAC-AA-GATA-TCTTCAAGAGT-ATACGTGTA----CATTTATTT---TATACTCTG----AAAAGCTGTTATACA-CAT-T-ACAATGTTGAGGAG--GTTGGACACATGCT--ACACATATTACAACATATAT------------ATGGTGCCCGTAAGTATAAA--AT-CCA-CCTCCTCCAG--CAATAAAGTCTGCATATGATAATTATTTTACAATATAA-AACACTTTATGCCTGGGCTACAATGGAACGATTCAAAAGAAATTTTTGAAA-TAA-A-TATAAATAA-ACAT------ATTAAAGAA-AATCTTG-TAATATCTTTTTGGAAACG-----CATGCC--ATAAAACG---AGA-TAATTAGTCTGCAGGCAGTGCGTCCAGGTGTTT-TGTCGACAGAAAATTTGAATCT----TAAACAC-------AG--CAGACGGAC-------AAGG-TGTGA----TTA--CCT--ATG-G-T-ATG---CAT--TGAATGATCC--A-----ACTTGATGT----------GGTT----AAGATGGA-AAATG--ATTCACA-ACAC---CT---GGCTCAT-AGTTTAA-TTCACA-A-AAATT--------GATGTTA--CAGTGATTTTTAAAAATA-------------GTACCAC---A-A---------TGAT--A-TAATTATG--CTTTGCCTTACTAA---TAATCCCA--T--A-TG-------------TCTTTCT-TGAACAC-CAG--TG-----TGAATAAACT--GCAATGTCTTCGCCCAC--A----CT-T-----AT----CAACATC----T-TT-TG--C-AGA--TTGGA-A-GCACCAA----TA
gi|11 : agctcttgtaatccaacgttttgattcttaagatctttgatcatgtcaacgatcatatccggcttcatcgactttgcagatccttcctagtttctcctgtaaaatatgataatttgaaagttttatacccttgtcatgaaatatccaggacatatatatagtattaggtttttttgtcttctgtcatgnnnnnnnnnnnnnnnnnnnnnnnnnatacagctaaactatatggtactatccatctcaacaatgcaagagattttgactttggatatatattcgccattgatatatttggttcagggggacggtatgtcgtacttgtacataatatatacatattgtgttgtttgaaaaaattcccgattattgaaataaataaagttatagacttttgattttcggcccatctgtggactaacagacctggtcagtattggtatgaccaaagcaaagtctgaggtcaaccaattacttgacagtctgtatgagtcggatagatccttatcaatgtctaaattgtgtaatgttttagtttgtaataaatgtaatttacatattttatgtatttaacagaaggtgttgttaacaaacctgcaacatagacttttcaggaggggttgccccttcttctgcaaggcattgtagagcatattctcgcagcctggttttctggcatcggaacatcatagaatcctttcagcacctttcccggttgtttatctccatatcaacctgtactgtgtgagtccccaaattgaatag-TAAA-A--TAATTCT-ATTTCAGAATA-------------TGCCCA------CG-------GTATTG----AAAATA-TCTTCAAGAGT---ATGTGTA----CATTTATTT-----TAC-CTG----AAAAGCTGTTATA
gi|16 : A----CATTTATTT---TA--C-CTG----AAAAGCTGTTATA
gi|2 : TACAGAATT-TCAATATAAA-AAATACCTCTCATTTAAGAATACCCATTCATCCAGTGCCCATATGTACGCCACTAAGTATT-AT-AAA--TA-TCTTCAAGAGT-A-ACGT-TATGATCATTTATTCCTCTCTACGCTGTTTAAAAAGCTGTTTTACA-CATGT-GTCATGTTA--GAGCCGTTGGGTACGTCCCTGACACATAAAATAA-ATATATTTGTAGAATTATATGGTGGCCTT---T-TGAAATATATCA-CCTCG---AGGGCAATAA-GT-TGCAAATGGAAATTA-TTTACAAT----------------------------------GATA-AAAAGAATTGTTCCGAG-TAATA-TATTAATAATACCCATGTAAATTAGG-AATTATAGTGTTAACAT-TTTTCGGAAA-AGAAGCCATA-CTGACAAAACGCCAGGATTAATTAG--TGCA-GCAG-GTGT-CAGGT-TATATGT-GA-AG-AA--TTGCA-CTTCCCTAAACACCCCCGTTAGTTTATAC--ACTACCCAAAAGGATGTAAGTTTTTACTCCT--ATGTGTT-TTG---C-TAATGAATGAA-CCTA-----A--TGATGTATAGAAAGACAGTTTAAGAA-AT-GATAAATGAAATTCACACCCACTGACTAGAGACTCATAAGTTT-ATTGCACA-ATTAATTATGACCCCCATGTTACTCAGTGA-TTTTAAAAGTAAATCCCCTTGATCTTACCACCATA-AATGATGATGTG-T--ATTAA-TATG--CTTC------CCAAACTT----CCATTTTAA-TGATGTTCATATAGTTCTGTAT-TGA--G--CAG--TTGAGAGTGAAT-AACT--GCAGTGT-CT--TCCACCTATCTCCT-TTTAGAATAGTGC-ACACC-CATTGTC-TGACC-AGA--TTGGA-AGG--CCAA----TAA---------TCCCGAACTCTTTAAAATCCTTGTGACCCTGCGTCTACTTCATCAA----ATCG-ATTAAATT----CCCG-TTAT
gi|3 : gttttaggtttgtaataaatgtattgactgtatattatggaagtgttacattcctgcaatcatgactttcaggagggtggccctatttctcagcattgtagcattttctgcatcgaacatcaatagttcaacatctccggtttaatctccaatagcaatgtactgtgtctcaaaatttgaatacacaTAAACAA--TC-ACAAAAATATCAATCTAAATA--TAATT--TATTTCAGAATA-------------TGCC-A-------G-------ATATTGACCAAGGATAATCTTCAAGAGTTA-GCGTGTA----CATTTATTT---TATAC-CTG----AAAAGCTGTTATACATCAT-TTACAATGTTGAGGAG--GGTGGACACATGCT--ACACATATTACA-CATATATC-----------ATGGTGCCGTT-AATATAAAACAT-CCAACCTCCCTCAG--CAATAAAGT-TGCATATGATAATTA-TTTACAATAT-ATAACA---TATGCT--GGC-A-AATG---CGATT-AA--GAAATTTTTTGAAATAA-AATATAAATAA-ACA--------TTA-A-AA-CATACTG-TA-TATCTTTTTGGAAA-G-----CATG-C--A--AAA-G---AGAT-AATTAGT--GCAG-CAG-GCGTCCAGGT--GT-TGT-GA-AGAAA--TTGCA-CT----TAA-CAC-------AG--CAGA---ACT-----AA-GG-TGTGA---TTTA--CCT--ATG-G-T-TTG---C-T--TGAATGAT-G--A-----A-TTGATGT----------GGT-----AA-AT-GA-AAATG--ATTCACA-ACAC---CT---GGCTCAT-AGTTT-A-TGCACA-A-AAATT--------GATGTTA--CAGTGATTTTTAAAAATA-------------GTACCAC---A-A---------TG-T--A-TAA-TATG--CTTC------CTAA---T----CCA--T-AA-TG-------------TCTTTCT-TGAACA--CAG--T------TGAAT-AACT--GCAATGTCCT--TCCAC--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----TAC---------ACCC-AACTC--TACAATCCTTGT-ACCCT-C-TCTAC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGGTCA-TCC--TTTTCATA-ATAAAT--AC-CGTCGCCA--TCACT-ATCATCG-TC-TCGTACTGTCA-GACCA-CAC--ATGG-TTCATGTCACATGCA--TGTTCCGTACG--TGAATA-----CGTATGGTC-AAGACAGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGTGATT-ATTTTTCAGGACTTGGAA-AACTTGTTCA-AAAGTTAGTTTTG
gi|4 : tTTA--CCTTTATG-G-TGTTGTTCC-T--T-AATGAT-C--ATGAGTA-TAGCTGT----------GG------AA-AT-GA-AAATG--ATTCACA-ACA----CT---GGCTCAT--CTTT-A-TGCACACA-AAAAT--------TATGTTA---AGTGATTTTT-AAAATA-------------T--CCACT--ATA---------TG-TTCA-TAA-TAGGTTCTTCAT----CCAA---T-----CA--TTAACTGT------------TCTTTCTCTGACTAGCCAGTAT------TG-AT-AACTTGACA--GTCCT--TCC-C--A----CTCT-----GTC---C-ATATCAC-TT-TCGTA--CAAGATTTTAGACA-A--CCAAGGACTACCAGTCATAAACTC-AATTT--TACAA-CCTTCT-ACCCT-C-TCTTCCGT----ATAATATCATTTTAAATTTTCCTCTGC-TATATCTCGTCAATCGAATTGGCTCCAACACT-GACCAGTCCTTTTTTCACACATAAATTAACTTGTCGCGATTTCACTAATCCACG-TCTAT---CTATCAGGACTA-C-CATATGGTTTCATGTCACATGCATTTTTTCC-TACGTTTGCATATTTATCTCATGGTCTAAGACTGAAAATCA-TAAGTAATTTAAATTAATTCTTAATTTTACTGCAATTCATTTTTCAGGACTTGGAACAACTTTGACGAAAAGTTATTCTT
gi|5 : --ATTCACA-ACAC---CT---GGCTCAT-AGTTT-A-TGCAAA-A-AAAAT--------TATGTTA--TAGTGATTTTTAAAAATA-------------TTCCCAC---A-A---------TG-T--A-TAA-TATG--CTTC------CCAA---T----CCA--T-AA-TG-------------TCTTTCC-TGAACA--CCG--T------TGAAT-AATT--GCAGTGTCCT--TCCAT--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----GAC---------ACCG-AATTC--TACAATCCTTCT-ACCCT-C-TCTCC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGACCA-TCC--TTTTCACA-ATAAAT--AC-CGTCGCCA--TCACT-ATCATCG-TC-A----CTGTCA-GACCACC-C--ATGG-TTCATGTCACATGTA--TGTTCCGTACG--TGAATA-----CGTATGATC-AAGACTGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGCAATT-ATTTTTCAGGACTTGGAA-AACTTGTTC--AAAGTTATTTTTGtacgaaatcgtgaatctaactcaccactg
gi|6 : CAC---A-A---------TG-T--A-TAA-CATG--CTTC------CCAA---T----CC---TTAA-TG-------------TCTTTCC-TGAACA--CAG--T------TGAAT-AACT--GCAGTGCCCT--TCAAC--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----GAC---------ACCC-AACTC--TACAATCCTTCT-ACCCT-C-TCTCC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGACCA-TCC--TTTTCAGA-ATGAAT--AG-TGTCGCCA--TCACT-ATCA--GACC-AC---CTG----GGC---C-C--ATGG-TGCATGTCACATGCA--TGTTCCATACG--TGAATA-----CGTATGGTC-AAGACTGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGCAATT-ATTTTTCGGGACTTTGAA-AACTTGTTC--AAAGTTATTTTTGatagcatataatctgctcaccagctg
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TACTGAATAAATAAGTTATAGACTTTTGATTTCGGCCCATCTGTGACTATACAGACCTGGTCAGGTATTGGTTGACCGAAGCAAAGTCAAGGTCAACCAATACCTGACCAGGTCCATATAGTCAGGATAGACCTCATCAAAAATCTAAAATGTGTAATGTTTTAGGTTTGTAATAAATGTATTGACTGTATATTATGGAAGTGTTGTTATATACCTGCAATCATGACTTTCAGGAGGGGTAGCCCTTTTCTCAGCATTGTAGCATATTCTGCATTTTCTGCATCGAACATCATAGTTCAACACCTTTCCGGTTTTATTTCCAATCAATGTACTGTATCCTACAAAATTTGAAT
Unaligned ( gi|8 ): ATGTTTTAGGTTTGTAATAAATGTATTTAATGTATATTACAGAAGTGTTGTTACAAACCTGCAATCATGACTTTCAGGAGGGGTTGCCCTTTTCTCAGCATTGTAGCATATTCTGCATTTTCTGCATCGAACATCATAGTTCAGCACCTTTCCGGTTTTTATCTCCAATCAATGTACTGTGTCCTACCAAATTGAA
Unaligned ( gi|9 ): CTGATCATTCAATAAAGCAGTTATTGAATTTTGATGAGGTCTACTTCAGTGACCTATATCAGAACCGGTCAGTATTCAGTGGACCAAACACTGTAGATATGGAGGCGACTCAAATCTGACAGGTGCAATATCAGCA
Unaligned ( gi|10 ): ACAATTACTGAATTTCGATTAGGTCTACTCGTGCATATACGGACCTGGTGCAGGTATTAGTTGGCCGAGACCGAAAACCGAGGATAGCCAAAC
Unaligned ( gi|12 ): ATACAATAAATTGACTTTTAATTGGGTGTGTCCTTGATGATATGGACCTCTGATCAGGTATTGGGTGGCTGAAGGCCAAAGTCAA
Unaligned ( gi|13 ): TTGATCAACCAATGCCTGAACAGGTTCCTGTAGTCATGAGTAGACCTGATCAAAAGTCAATATCAATAGTTGTATAAA
Unaligned ( gi|14 ): TACATGACTTTCGATGAGGTCTACTCTTGGCTATACAGACTTTGTCAGGCAGTGGTTGACCGAGGCCATAGGCTGA
Unaligned ( gi|15 ): AGTTCAACACATTTCCGGTTTTATTTCCAATCAATGTACTG
Alignments
lowQualScore : 111111111111111111111111111111111
lowQualScore : 11 2 1111 111 6666666666666666666666666666666666 11111111 1 222 1111 111111111 1111 1 111 11 11 11 777777777777 222 11 1 1 11 11 1 1 000000000000000000000000000000000 1 1 111 1 5555555 222 11 1 4444444 222222 222 11 222 11 1 22222 1 1 11 1 2222 66666666666666666666666666 1 3333 11 11 1 111 22222222 4444444444444 666666666666666666 1 1 1 11 111 111 333333333 111 4444444444444444 333333333333333 222222 222222222222222 4444444444444 11 222222222 1111111 22222222222 111 1111 333333333 11 444444444444 1111 1 1 11 1 11 1 11 1 11 1 1 333333 1 11111111 1 11 11 22222 1 11 11 1 111 1 1 22
lowQualScore : 88 7 7 0 4444 999 3333333333333333333333333333333333 77777777 0 333 2 7777 888888888 7777 3 777 7 88 0 88 44 555555555555 444 7 11 3 3 55 88 7 3 3 555555555555555555555555555555555 3 7 3 3 777 3 0000000 111 44 1 3 7 6 0 2222222 444444 6 333 44 888 33 3 6 66666 3 3 7 88 3 8888 7 55555555555555555555555555 7 3 0000 33 33 0 111 22222222 2 0000000000000 111111111111111111 0 0 0 11 8 444 444 88 8 8 8 8 1 000000000 444 0 0 6666666666666666 333333333333333 6 99 6 6 99 888888 000000000000000 6 3333333333333 6 3 55 666666666 6 99 3 99 4444444 6 22222222222 6 111 6 6 99 6 99 6 6 99 4444 222222222 8 11 0 8 8 8 1 888888888888 8 7777 0 0 0 33 2 0 33 0 0 33 0 33 0 9 0 111111 3 0 77777777 0 33 6 33 55555 0 33 3 33 0 777 2 0 0 99
lowQualScore : .. . . . .... ... .................................. ........ . ... . .... ......... .... . ... . .. . .. .. ............ ... . .. . . .. .. . . . ................................. . . . . ... . ....... ... .. . . . . . ....... ...... . ... .. ... .. . . ..... . . . .. . .... . .......................... . . .... .. .. . ... ........ . ............. .................. . . . .. . ... ... .. . . . . . ......... ... . . ................ ............... . .. . . .. ...... ............... . ............. . . .. ......... . .. . .. ....... . ........... . ... . . .. . .. . . .. .... ......... . .. . . . . . ............ . .... . . . .. . . .. . . .. . .. . . . ...... . . ........ . .. . .. ..... . .. . .. . ... . . . ..
lowQualScore : 00 3 3 0 8888 000 2222222222222222222222222222222222 55555555 0 222 5 0000 000000000 0000 3 777 3 33 7 33 00 333333333333 333 3 00 3 3 77 33 3 3 3 777777777777777777777777777777777 3 3 7 3 777 3 3333333 333 33 0 3 3 7 7 0000000 777777 7 333 77 000 33 3 7 00000 3 3 3 33 3 3333 3 00000000000000000000000000 3 3 7777 88 88 0 000 22222222 5 2222222222222 555555555555555555 0 0 0 00 0 000 000 88 0 0 0 0 4 000000000 222 8 8 0000000000000000 777777777777777 7 22 7 7 22 333333 000000000000000 7 3333333333333 7 2 88 000000000 7 22 7 22 3333333 7 00000000000 7 777 7 7 22 7 22 7 7 22 2222 000000000 0 00 8 0 0 0 0 000000000000 0 0000 8 0 0 88 5 0 88 2 0 88 0 88 0 8 0 555555 2 0 22222222 0 88 5 88 00000 0 88 2 88 0 555 0 0 0 00
consensus : NTAAACAAACTCTACAAAAATATCAAT-TAAA-A--TAATTCTTATTTCAGAATA-------------TGCCCA------CG-------GTATTGAC-AAAGATA-TCTTCAAGAGT-A-ACGTGTA----CATTTATTT---TATAC-CTG----AAAAGCTGTTATACA-CAT-T-ACAATGTTGAGGAG--GTTGGACACGTGCT--ACACATATTACAACATATATC-----------ATGGTGCCCTT-AGTATAAAACAT-CCA-CCTCCCCCAG--CAATAAAGT-TGCATATGATAATTA-TTTACAATAT-A-AACA---TATGCC--GGC-A-AATG---CGATT-AAAAGAAATTTTTCGAA-TAA-A-TATAAATAA-ACAC------ATTAGA-AA-NATANTG-TAATATCTTTTCGGAAA-G-----CATG-C--ACAAAACG---AGATTAATTAGT-TGCAGGCAG-GCGTCCAGGT-TNT-TGT-GA-AGAAA--TTGCA-CT----TAAACAC-------AG--CAGAC--ACT-----AAAGG-TGTGA---TTTA--CCT--ATG-G-T-TTG---C-T--TGAATGAT-C--A-----A-TTGATGT----------GGTT----AA-AT-GA-AAATG--ATTCACA-ACAC---CT---GGCTCAT-AGTTT-A-TGCACA-A-AAATT--------NATGTTA--CAGTGATTTTTAAAAATA-------------TTACCAC---A-A---------TG-T--A-TAA-TATG--CTTC------CCAA---T----CCA--TTAA-TG-------------TCTTTCT-TGAACA--CAG--T------TGAAT-AACT--GCAGTGTCCT--TCCAC--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----TAC---------ACCC-AACTC--TACAATCCTTCT-ACCCT-C-TCTNC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGACCA-TCC--TTTTCACA-ATAAAT--AC-CGTCGCCA--TCACT-ATCATCG-TC-AC---CTGTCA-GACCA-C-C--ATGG-TTCATGTCACATGCA--TGTTCCGTACG--TGAATA-----CGTATGGTC-AAGACTGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGCGATT-ATTTTTCAGGACTTGGAA-AACTTGTTCG-AAAGTTATTTTTG
Reference ( family-5070 ) : NTAAACAAACTCTACAAAAATATCAAT-TAAA-A--TAATTCTTATTTCAGAATA-------------TGCCCA------CG-------GTATTGAC-AAAGATA-TCTTCAAGAGT-A-ACGTGTA----CATTTATTT---TATAC-CTG----AAAAGCTGTTATACA-CAT-T-ACAATGTTGAGGAG--GTTGGACACGTGCT--ACACATATTACAACATATATC-----------ATGGTGCCCTT-AGTATAAAACAT-CCA-CCTCCCCCAG--CAATAAAGT-TGCATATGATAATTA-TTTACAATAT-A-AACA---TATGCC--GGC-A-AATG---CGATT-AAAAGAAATTTTTCGAA-TAA-A-TATAAATAA-ACAC------ATTAGA-AA-NATANTG-TAATATCTTTTCGGAAA-G-----CATG-C--ACAAAACG---AGATTAATTAGT-TGCAGGCAG-GCGTCCAGGT-TNT-TGT-GA-AGAAA--TTGCA-CT----TAAACAC-------AG--CAGAC--ACT-----AAAGG-TGTGA---TTTA--CCT--ATG-G-T-TTG---C-T--TGAATGAT-C--A-----A-TTGATGT----------GGTT----AA-AT-GA-AAATG--ATTCACA-ACAC---CT---GGCTCAT-AGTTT-A-TGCACA-A-AAATT--------NATGTTA--CAGTGATTTTTAAAAATA-------------TTACCAC---A-A---------TG-T--A-TAA-TATG--CTTC------CCAA---T----CCA--TTAA-TG-------------TCTTTCT-TGAACA--CAG--T------TGAAT-AACT--GCAGTGTCCT--TCCAC--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----TAC---------ACCC-AACTC--TACAATCCTTCT-ACCCT-C-TCTNC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGACCA-TCC--TTTTCACA-ATAAAT--AC-CGTCGCCA--TCACT-ATCATCG-TC-AC---CTGTCA-GACCA-C-C--ATGG-TTCATGTCACATGCA--TGTTCCGTACG--TGAATA-----CGTATGGTC-AAGACTGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGCGATT-ATTTTTCAGGACTTGGAA-AACTTGTTCG-AAAGTTATTTTTG
gi|1 : TAAACAAACTCTACAAAAATATCAAT-TAAA-A--TAATT-TTATTTCAGAATA-------------TGCCCA------CG-------ATATTGAC-AA-GATA-TCTTCAAGAGT-ATACGTGTA----CATTTATTT---TATACTCTG----AAAAGCTGTTATACA-CAT-T-ACAATGTTGAGGAG--GTTGGACACATGCT--ACACATATTACAACATATAT------------ATGGTGCCCGTAAGTATAAA--AT-CCA-CCTCCTCCAG--CAATAAAGTCTGCATATGATAATTATTTTACAATATAA-AACACTTTATGCCTGGGCTACAATGGAACGATTCAAAAGAAATTTTTGAAA-TAA-A-TATAAATAA-ACAT------ATTAAAGAA-AATCTTG-TAATATCTTTTTGGAAACG-----CATGCC--ATAAAACG---AGA-TAATTAGTCTGCAGGCAGTGCGTCCAGGTGTTT-TGTCGACAGAAAATTTGAATCT----TAAACAC-------AG--CAGACGGAC-------AAGG-TGTGA----TTA--CCT--ATG-G-T-ATG---CAT--TGAATGATCC--A-----ACTTGATGT----------GGTT----AAGATGGA-AAATG--ATTCACA-ACAC---CT---GGCTCAT-AGTTTAA-TTCACA-A-AAATT--------GATGTTA--CAGTGATTTTTAAAAATA-------------GTACCAC---A-A---------TGAT--A-TAATTATG--CTTTGCCTTACTAA---TAATCCCA--T--A-TG-------------TCTTTCT-TGAACAC-CAG--TG-----TGAATAAACT--GCAATGTCTTCGCCCAC--A----CT-T-----AT----CAACATC----T-TT-TG--C-AGA--TTGGA-A-GCACCAA----TA
gi|11 : agctcttgtaatccaacgttttgattcttaagatctttgatcatgtcaacgatcatatccggcttcatcgactttgcagatccttcctagtttctcctgtaaaatatgataatttgaaagttttatacccttgtcatgaaatatccaggacatatatatagtattaggtttttttgtcttctgtcatgnnnnnnnnnnnnnnnnnnnnnnnnnatacagctaaactatatggtactatccatctcaacaatgcaagagattttgactttggatatatattcgccattgatatatttggttcagggggacggtatgtcgtacttgtacataatatatacatattgtgttgtttgaaaaaattcccgattattgaaataaataaagttatagacttttgattttcggcccatctgtggactaacagacctggtcagtattggtatgaccaaagcaaagtctgaggtcaaccaattacttgacagtctgtatgagtcggatagatccttatcaatgtctaaattgtgtaatgttttagtttgtaataaatgtaatttacatattttatgtatttaacagaaggtgttgttaacaaacctgcaacatagacttttcaggaggggttgccccttcttctgcaaggcattgtagagcatattctcgcagcctggttttctggcatcggaacatcatagaatcctttcagcacctttcccggttgtttatctccatatcaacctgtactgtgtgagtccccaaattgaatag-TAAA-A--TAATTCT-ATTTCAGAATA-------------TGCCCA------CG-------GTATTG----AAAATA-TCTTCAAGAGT---ATGTGTA----CATTTATTT-----TAC-CTG----AAAAGCTGTTATA
gi|16 : A----CATTTATTT---TA--C-CTG----AAAAGCTGTTATA
gi|2 : TACAGAATT-TCAATATAAA-AAATACCTCTCATTTAAGAATACCCATTCATCCAGTGCCCATATGTACGCCACTAAGTATT-AT-AAA--TA-TCTTCAAGAGT-A-ACGT-TATGATCATTTATTCCTCTCTACGCTGTTTAAAAAGCTGTTTTACA-CATGT-GTCATGTTA--GAGCCGTTGGGTACGTCCCTGACACATAAAATAA-ATATATTTGTAGAATTATATGGTGGCCTT---T-TGAAATATATCA-CCTCG---AGGGCAATAA-GT-TGCAAATGGAAATTA-TTTACAAT----------------------------------GATA-AAAAGAATTGTTCCGAG-TAATA-TATTAATAATACCCATGTAAATTAGG-AATTATAGTGTTAACAT-TTTTCGGAAA-AGAAGCCATA-CTGACAAAACGCCAGGATTAATTAG--TGCA-GCAG-GTGT-CAGGT-TATATGT-GA-AG-AA--TTGCA-CTTCCCTAAACACCCCCGTTAGTTTATAC--ACTACCCAAAAGGATGTAAGTTTTTACTCCT--ATGTGTT-TTG---C-TAATGAATGAA-CCTA-----A--TGATGTATAGAAAGACAGTTTAAGAA-AT-GATAAATGAAATTCACACCCACTGACTAGAGACTCATAAGTTT-ATTGCACA-ATTAATTATGACCCCCATGTTACTCAGTGA-TTTTAAAAGTAAATCCCCTTGATCTTACCACCATA-AATGATGATGTG-T--ATTAA-TATG--CTTC------CCAAACTT----CCATTTTAA-TGATGTTCATATAGTTCTGTAT-TGA--G--CAG--TTGAGAGTGAAT-AACT--GCAGTGT-CT--TCCACCTATCTCCT-TTTAGAATAGTGC-ACACC-CATTGTC-TGACC-AGA--TTGGA-AGG--CCAA----TAA---------TCCCGAACTCTTTAAAATCCTTGTGACCCTGCGTCTACTTCATCAA----ATCG-ATTAAATT----CCCG-TTAT
gi|3 : gttttaggtttgtaataaatgtattgactgtatattatggaagtgttacattcctgcaatcatgactttcaggagggtggccctatttctcagcattgtagcattttctgcatcgaacatcaatagttcaacatctccggtttaatctccaatagcaatgtactgtgtctcaaaatttgaatacacaTAAACAA--TC-ACAAAAATATCAATCTAAATA--TAATT--TATTTCAGAATA-------------TGCC-A-------G-------ATATTGACCAAGGATAATCTTCAAGAGTTA-GCGTGTA----CATTTATTT---TATAC-CTG----AAAAGCTGTTATACATCAT-TTACAATGTTGAGGAG--GGTGGACACATGCT--ACACATATTACA-CATATATC-----------ATGGTGCCGTT-AATATAAAACAT-CCAACCTCCCTCAG--CAATAAAGT-TGCATATGATAATTA-TTTACAATAT-ATAACA---TATGCT--GGC-A-AATG---CGATT-AA--GAAATTTTTTGAAATAA-AATATAAATAA-ACA--------TTA-A-AA-CATACTG-TA-TATCTTTTTGGAAA-G-----CATG-C--A--AAA-G---AGAT-AATTAGT--GCAG-CAG-GCGTCCAGGT--GT-TGT-GA-AGAAA--TTGCA-CT----TAA-CAC-------AG--CAGA---ACT-----AA-GG-TGTGA---TTTA--CCT--ATG-G-T-TTG---C-T--TGAATGAT-G--A-----A-TTGATGT----------GGT-----AA-AT-GA-AAATG--ATTCACA-ACAC---CT---GGCTCAT-AGTTT-A-TGCACA-A-AAATT--------GATGTTA--CAGTGATTTTTAAAAATA-------------GTACCAC---A-A---------TG-T--A-TAA-TATG--CTTC------CTAA---T----CCA--T-AA-TG-------------TCTTTCT-TGAACA--CAG--T------TGAAT-AACT--GCAATGTCCT--TCCAC--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----TAC---------ACCC-AACTC--TACAATCCTTGT-ACCCT-C-TCTAC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGGTCA-TCC--TTTTCATA-ATAAAT--AC-CGTCGCCA--TCACT-ATCATCG-TC-TCGTACTGTCA-GACCA-CAC--ATGG-TTCATGTCACATGCA--TGTTCCGTACG--TGAATA-----CGTATGGTC-AAGACAGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGTGATT-ATTTTTCAGGACTTGGAA-AACTTGTTCA-AAAGTTAGTTTTG
gi|4 : tTTA--CCTTTATG-G-TGTTGTTCC-T--T-AATGAT-C--ATGAGTA-TAGCTGT----------GG------AA-AT-GA-AAATG--ATTCACA-ACA----CT---GGCTCAT--CTTT-A-TGCACACA-AAAAT--------TATGTTA---AGTGATTTTT-AAAATA-------------T--CCACT--ATA---------TG-TTCA-TAA-TAGGTTCTTCAT----CCAA---T-----CA--TTAACTGT------------TCTTTCTCTGACTAGCCAGTAT------TG-AT-AACTTGACA--GTCCT--TCC-C--A----CTCT-----GTC---C-ATATCAC-TT-TCGTA--CAAGATTTTAGACA-A--CCAAGGACTACCAGTCATAAACTC-AATTT--TACAA-CCTTCT-ACCCT-C-TCTTCCGT----ATAATATCATTTTAAATTTTCCTCTGC-TATATCTCGTCAATCGAATTGGCTCCAACACT-GACCAGTCCTTTTTTCACACATAAATTAACTTGTCGCGATTTCACTAATCCACG-TCTAT---CTATCAGGACTA-C-CATATGGTTTCATGTCACATGCATTTTTTCC-TACGTTTGCATATTTATCTCATGGTCTAAGACTGAAAATCA-TAAGTAATTTAAATTAATTCTTAATTTTACTGCAATTCATTTTTCAGGACTTGGAACAACTTTGACGAAAAGTTATTCTT
gi|5 : --ATTCACA-ACAC---CT---GGCTCAT-AGTTT-A-TGCAAA-A-AAAAT--------TATGTTA--TAGTGATTTTTAAAAATA-------------TTCCCAC---A-A---------TG-T--A-TAA-TATG--CTTC------CCAA---T----CCA--T-AA-TG-------------TCTTTCC-TGAACA--CCG--T------TGAAT-AATT--GCAGTGTCCT--TCCAT--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----GAC---------ACCG-AATTC--TACAATCCTTCT-ACCCT-C-TCTCC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGACCA-TCC--TTTTCACA-ATAAAT--AC-CGTCGCCA--TCACT-ATCATCG-TC-A----CTGTCA-GACCACC-C--ATGG-TTCATGTCACATGTA--TGTTCCGTACG--TGAATA-----CGTATGATC-AAGACTGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGCAATT-ATTTTTCAGGACTTGGAA-AACTTGTTC--AAAGTTATTTTTGtacgaaatcgtgaatctaactcaccactg
gi|6 : CAC---A-A---------TG-T--A-TAA-CATG--CTTC------CCAA---T----CC---TTAA-TG-------------TCTTTCC-TGAACA--CAG--T------TGAAT-AACT--GCAGTGCCCT--TCAAC--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----GAC---------ACCC-AACTC--TACAATCCTTCT-ACCCT-C-TCTCC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGACCA-TCC--TTTTCAGA-ATGAAT--AG-TGTCGCCA--TCACT-ATCA--GACC-AC---CTG----GGC---C-C--ATGG-TGCATGTCACATGCA--TGTTCCATACG--TGAATA-----CGTATGGTC-AAGACTGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGCAATT-ATTTTTCGGGACTTTGAA-AACTTGTTC--AAAGTTATTTTTGatagcatataatctgctcaccagctg
blockSeqs : . T A A AAA CTC CCCATTCATCCAGTGCCCATATGTACGCCACTAA GACCAAGG A TA G TGAT CTCTCTACG TTTA T GT A CC TG A TTGTAGAATTAT AA A AT A A CT GG A . . ATATAACATATGCTGGCAAATG . A C A TA T CATGTAA GG TT G T A C AGAAGC CTGAC C CCA TT T G . C TATA . . A . . TCCC A CCCCGTTAGTTTATACACTACCCA A A GTTT CT TT T TT TTCCT G CATGAGTAT ATAGAAAGACAGTTTAAG . . T AA C TGA AGA AA . T C T T ATGACCCCC CTC AATCCCCTTGATCTTA CATAAATGATGATG . TC T . TT AT ACTTCCATTTT C ATGTTCATATAGT C A GC TTGAGAG . TG G . CTATCTC C TTAGAATAGTG . CA G G AC A TT C G . GGAC CAGTCATAA . . . . . A CGTATAAT T TTCC T T AT G G TT C TA T TT A A A TAT T G TACCAT T TT G TT TTTAT T AT T TA C TAC A C C GA
blockSeqs : . . C TA CT TGCCCACG ATAAA . A G . TATAC . . TT . . . C C . . AC . . . . . . . . . . T . AA . . A C C . . . G CA . . T T G . . GT . . . . . . . AGCAGAACT . . T . . . TG CTAA G CCTAA GGT . . . . . . . A . . . . T G C GTA TATA . . . . . . TCCAT . T . C . TAT . . A . A . GTC . AC . . . . . . . . . . . . . . . T A . . . . . G . . . . . . . T . AC T . CACCC . . A . . . . T . . . A . . .
blockSeqs : . A T TGCCAG GAAA . . . . TAC . . . . T CT . GAAT GG . . . . . . . A . . . . A T T TTC AA . . . . . . TCATT . . . A . T . . G . A . AT . C . . . . . . . . . . . . . . . C A . . . . . . . . . . . . . . . A . . CC . . . . . . . . . . . A . . .
blockSeqs : . TAC . . . . . . . . . . A T . T AA . . . . . . TCCAT . . . A . T . . G . A . AT . C . . . . . . . . . . . . . . . C A . .
blockSeqs : AA . . . . . . TCCTT . . . . . T . . . . A . AT . C . . . . . . . . .
blockSeqCons : TAC****** ****** TCCNT********** ** T******** ** C** ** ** A***********
originalCons : NTAAACAAACTCTACAAAAATATCAAT-TAAA-A--TAATTCTTATTTCAGAATA-------------TGCCCA------CG-------GTATTGAC-AAAGATA-TCTTCAAGAGT-A-ACGTGTA----CATTTATTT---TATAC-CTG----AAAAGCTGTTATACA-CAT-T-ACAATGTTGAGGAG--GTTGGACACGTGCT--ACACATATTACAACATATATC-----------ATGGTGCCCTT-AGTATAAAACAT-CCA-CCTCCCCCAG--CAATAAAGT-TGCATATGATAATTA-TTTACAATAT-A-AACA---TATGCC--GGC-A-AATG---CGATT-AAAAGAAATTTTTCGAA-TAA-A-TATAAATAA-ACAC------ATTAGA-AA-NATANTG-TAATATCTTTTCGGAAA-G-----CATG-C--ACAAAACG---AGATTAATTAGT-TGCAGGCAG-GCGTCCAGGT-TNT-TGT-GA-AGAAA--TTGCA-CT----TAAACAC-------AG--CAGAC--ACT-----AAAGG-TGTGA---TTTA--CCT--ATG-G-T-TTG---C-T--TGAATGAT-C--A-----A-TTGATGT----------GGTT----AA-AT-GA-AAATG--ATTCACA-ACAC---CT---GGCTCAT-AGTTT-A-TGCACA-A-AAATT--------NATGTTA--CAGTGATTTTTAAAAATA-------------TTACCAC---A-A---------TG-T--A-TAA-TATG--CTTC------CCAA---T----CCA--TTAA-TG-------------TCTTTCT-TGAACA--CAG--T------TGAAT-AACT--GCAGTGTCCT--TCCAC--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----TAC---------ACCC-AACTC--TACAATCCTTCT-ACCCT-C-TCTNC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGACCA-TCC--TTTTCACA-ATAAAT--AC-CGTCGCCA--TCACT-ATCATCG-TC-AC---CTGTCA-GACCA-C-C--ATGG-TTCATGTCACATGCA--TGTTCCGTACG--TGAATA-----CGTATGGTC-AAGACTGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGCGATT-ATTTTTCAGGACTTGGAA-AACTTGTTCG-AAAGTTATTTTTG
finalCons : NTAAACAAACTCTACAAAAATATCAAT-TAAA-A--TAATTCTTATTTCAGAATA-------------TGCCCA------CG-------GTATTGAC-AAAGATA-TCTTCAAGAGT-A-ACGTGTA----CATTTATTTTAC------CTG----AAAAGCTGTTATACA-CAT-T-ACAATGTTGAGGAG--GTTGGACACGTGCT--ACACATATTACAACATATATC-----------ATGGTGCCCTT-AGTATAAAACAT-CCA-CCTCCCCCAG--CAATAAAGT-TGCATATGATAATTA-TTTACAATAT-A-AACA---TATGCC--GGC-A-AATG---CGATT-AAAAGAAATTTTTCGAA-TAA-A-TATAAATAA-ACAC------ATTAGA-AA-NATANTG-TAATATCTTTTCGGAAA-G-----CATG-C--ACAAAACG---AGATTAATTAGT-TGCAGGCAG-GCGTCCAGGT-TNT-TGT-GA-AGAAA--TTGCA-CT----TAAACAC-------AG--CAGAC--ACT-----AAAGG-TGTGA---TTTA--CCT--ATG-G-T-TTG---C-T--TGAATGAT-C--A-----A-TTGATGT----------GGTT----AA-AT-GA-AAATG--ATTCACA-ACAC---CT---GGCTCAT-AGTTT-A-TGCACA-A-AAATT--------NATGTTA--CAGTGATTTTTAAAAATA-------------TTACCAC---A-A---------TG-T--A-TAA-TATG--CTTC------CCAATCCNT----------AA-TG-------------TCTTTCT-TGAACA--CAGT--------TGAAT-AACT--GCAGTGTCCT--TCCAC--A----CT-T-----AT----C-ACATCC--TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----TAC---------ACCC-AACTC--TACAATCCTTCT-ACCCT-C-TCTNCA-----------ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGACCA-TCC--TTTTCACA-ATAAAT--AC-CGTCGCCA--TCACT-ATCATCG-TC-AC---CTGTCA-GACCA-C-C--ATGG-TTCATGTCACATGCA--TGTTCCGTACG--TGAATA-----CGTATGGTC-AAGACTGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGCGATT-ATTTTTCAGGACTTGGAA-AACTTGTTCG-AAAGTTATTTTTG
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TACTGAATAAATAAGTTATAGACTTTTGATTTCGGCCCATCTGTGACTATACAGACCTGGTCAGGTATTGGTTGACCGAAGCAAAGTCAAGGTCAACCAATACCTGACCAGGTCCATATAGTCAGGATAGACCTCATCAAAAATCTAAAATGTGTAATGTTTTAGGTTTGTAATAAATGTATTGACTGTATATTATGGAAGTGTTGTTATATACCTGCAATCATGACTTTCAGGAGGGGTAGCCCTTTTCTCAGCATTGTAGCATATTCTGCATTTTCTGCATCGAACATCATAGTTCAACACCTTTCCGGTTTTATTTCCAATCAATGTACTGTATCCTACAAAATTTGAAT
Unaligned ( gi|8 ): ATGTTTTAGGTTTGTAATAAATGTATTTAATGTATATTACAGAAGTGTTGTTACAAACCTGCAATCATGACTTTCAGGAGGGGTTGCCCTTTTCTCAGCATTGTAGCATATTCTGCATTTTCTGCATCGAACATCATAGTTCAGCACCTTTCCGGTTTTTATCTCCAATCAATGTACTGTGTCCTACCAAATTGAA
Unaligned ( gi|9 ): CTGATCATTCAATAAAGCAGTTATTGAATTTTGATGAGGTCTACTTCAGTGACCTATATCAGAACCGGTCAGTATTCAGTGGACCAAACACTGTAGATATGGAGGCGACTCAAATCTGACAGGTGCAATATCAGCA
Unaligned ( gi|10 ): ACAATTACTGAATTTCGATTAGGTCTACTCGTGCATATACGGACCTGGTGCAGGTATTAGTTGGCCGAGACCGAAAACCGAGGATAGCCAAAC
Unaligned ( gi|12 ): ATACAATAAATTGACTTTTAATTGGGTGTGTCCTTGATGATATGGACCTCTGATCAGGTATTGGGTGGCTGAAGGCCAAAGTCAA
Unaligned ( gi|13 ): TTGATCAACCAATGCCTGAACAGGTTCCTGTAGTCATGAGTAGACCTGATCAAAAGTCAATATCAATAGTTGTATAAA
Unaligned ( gi|14 ): TACATGACTTTCGATGAGGTCTACTCTTGGCTATACAGACTTTGTCAGGCAGTGGTTGACCGAGGCCATAGGCTGA
Unaligned ( gi|15 ): AGTTCAACACATTTCCGGTTTTATTTCCAATCAATGTACTG
Alignments
lowQualScore : 111111111111111111111111111111111
lowQualScore : 11 2 1111 111 6666666666666666666666666666666666 222222 1 1111 1111 2222222222222 1111 1 111 11 11 11 777777777777 222 11 1 1 11 11 1 1 000000000000000000000000000000000 1 1 111 1 5555555 222 11 1 4444444 222222 222 11 222 11 1 22222 1 1 11 1 2222 66666666666666666666666666 1 3333 11 11 1 111 22222222 4444444444444 666666666666666666 1 1 1 11 111 111 333333333 111 4444444444444444 333333333333333 2222222 111 1111 4444444444444 11 222222222 1111111 22222222222 111 1111 333333333 11 444444444444 1111 1 1 11 1 11 1 11 1 11 1 1 333333 1 11111111 1 11 11 22222 1 11 11 1 111 1 1 22
lowQualScore : 88 7 7 0 4444 999 3333333333333333333333333333333333 2 444444 0 8888 2 7777 8888888888888 7777 3 777 7 88 0 88 44 555555555555 444 7 11 3 3 55 88 7 3 3 555555555555555555555555555555555 3 7 3 3 777 3 0000000 111 44 1 3 7 6 0 2222222 444444 6 333 44 888 33 3 6 66666 3 3 7 88 3 8888 7 55555555555555555555555555 7 3 0000 33 33 0 111 22222222 2 0000000000000 111111111111111111 0 0 0 11 8 444 444 88 8 8 8 8 1 000000000 444 0 0 6666666666666666 333333333333333 6 99 6 6 99 99 99 1111111 111 2222 6 3333333333333 6 3 55 666666666 6 99 3 99 4444444 6 22222222222 6 111 6 6 99 6 99 6 6 99 4444 222222222 8 11 0 8 8 8 1 888888888888 8 7777 0 0 0 33 2 0 33 0 0 33 0 33 0 9 0 111111 3 0 77777777 0 33 6 33 55555 0 33 3 33 0 777 2 0 0 99
lowQualScore : .. . . . .... ... .................................. . ...... . .... . .... ............. .... . ... . .. . .. .. ............ ... . .. . . .. .. . . . ................................. . . . . ... . ....... ... .. . . . . . ....... ...... . ... .. ... .. . . ..... . . . .. . .... . .......................... . . .... .. .. . ... ........ . ............. .................. . . . .. . ... ... .. . . . . . ......... ... . . ................ ............... . .. . . .. .. .. ....... ... .... . ............. . . .. ......... . .. . .. ....... . ........... . ... . . .. . .. . . .. .... ......... . .. . . . . . ............ . .... . . . .. . . .. . . .. . .. . . . ...... . . ........ . .. . .. ..... . .. . .. . ... . . . ..
lowQualScore : 00 3 3 0 8888 000 2222222222222222222222222222222222 5 000000 0 0000 5 0000 2222222222222 0000 3 777 3 33 7 33 00 333333333333 333 3 00 3 3 77 33 3 3 3 777777777777777777777777777777777 3 3 7 3 777 3 3333333 333 33 0 3 3 7 7 0000000 777777 7 333 77 000 33 3 7 00000 3 3 3 33 3 3333 3 00000000000000000000000000 3 3 7777 88 88 0 000 22222222 5 2222222222222 555555555555555555 0 0 0 00 0 000 000 88 0 0 0 0 4 000000000 222 8 8 0000000000000000 777777777777777 7 22 7 7 22 22 22 7777777 777 7777 7 3333333333333 7 2 88 000000000 7 22 7 22 3333333 7 00000000000 7 777 7 7 22 7 22 7 7 22 2222 000000000 0 00 8 0 0 0 0 000000000000 0 0000 8 0 0 88 5 0 88 2 0 88 0 88 0 8 0 555555 2 0 22222222 0 88 5 88 00000 0 88 2 88 0 555 0 0 0 00
consensus : NTAAACAAACTCTACAAAAATATCAAT-TAAA-A--TAATTCTTATTTCAGAATA-------------TGCCCA------CG-------GTATTGAC-AAAGATA-TCTTCAAGAGT-A-ACGTGTA----CATTTATTT-----TA--C---CTG----AAAAGCTGTTATACA-CAT-T-ACAATGTTGAGGAG--GTTGGACACGTGCT--ACACATATTACAACATATATC-----------ATGGTGCCCTT-AGTATAAAACAT-CCA-CCTCCCCCAG--CAATAAAGT-TGCATATGATAATTA-TTTACAATAT-A-AACA---TATGCC--GGC-A-AATG---CGATT-AAAAGAAATTTTTCGAA-TAA-A-TATAAATAA-ACAC------ATTAGA-AA-NATANTG-TAATATCTTTTCGGAAA-G-----CATG-C--ACAAAACG---AGATTAATTAGT-TGCAGGCAG-GCGTCCAGGT-TNT-TGT-GA-AGAAA--TTGCA-CT----TAAACAC-------AG--CAGAC--ACT-----AAAGG-TGTGA---TTTA--CCT--ATG-G-T-TTG---C-T--TGAATGAT-C--A-----A-TTGATGT----------GGTT----AA-AT-GA-AAATG--ATTCACA-ACAC---CT---GGCTCAT-AGTTT-A-TGCACA-A-AAATT--------NATGTTA--CAGTGATTTTTAAAAATA-------------TTACCAC---A-A---------TG-T--A-TAA-TATG--CTT--C--C-------CAA---TCC---NTAA-TG-------------TCTTTCT-TGAACA--CAG--T------TGAAT-AACT--GCAGTGTCCT--TCCAC--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----TAC---------ACCC-AACTC--TACAATCCTTCT-ACCCT-C-TCTNC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGACCA-TCC--TTTTCACA-ATAAAT--AC-CGTCGCCA--TCACT-ATCATCG-TC-AC---CTGTCA-GACCA-C-C--ATGG-TTCATGTCACATGCA--TGTTCCGTACG--TGAATA-----CGTATGGTC-AAGACTGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGCGATT-ATTTTTCAGGACTTGGAA-AACTTGTTCG-AAAGTTATTTTTG
Reference ( family-5070 ) : NTAAACAAACTCTACAAAAATATCAAT-TAAA-A--TAATTCTTATTTCAGAATA-------------TGCCCA------CG-------GTATTGAC-AAAGATA-TCTTCAAGAGT-A-ACGTGTA----CATTTATTT-----TA--C---CTG----AAAAGCTGTTATACA-CAT-T-ACAATGTTGAGGAG--GTTGGACACGTGCT--ACACATATTACAACATATATC-----------ATGGTGCCCTT-AGTATAAAACAT-CCA-CCTCCCCCAG--CAATAAAGT-TGCATATGATAATTA-TTTACAATAT-A-AACA---TATGCC--GGC-A-AATG---CGATT-AAAAGAAATTTTTCGAA-TAA-A-TATAAATAA-ACAC------ATTAGA-AA-NATANTG-TAATATCTTTTCGGAAA-G-----CATG-C--ACAAAACG---AGATTAATTAGT-TGCAGGCAG-GCGTCCAGGT-TNT-TGT-GA-AGAAA--TTGCA-CT----TAAACAC-------AG--CAGAC--ACT-----AAAGG-TGTGA---TTTA--CCT--ATG-G-T-TTG---C-T--TGAATGAT-C--A-----A-TTGATGT----------GGTT----AA-AT-GA-AAATG--ATTCACA-ACAC---CT---GGCTCAT-AGTTT-A-TGCACA-A-AAATT--------NATGTTA--CAGTGATTTTTAAAAATA-------------TTACCAC---A-A---------TG-T--A-TAA-TATG--CTT--C--C-------CAA---TCC---NTAA-TG-------------TCTTTCT-TGAACA--CAG--T------TGAAT-AACT--GCAGTGTCCT--TCCAC--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----TAC---------ACCC-AACTC--TACAATCCTTCT-ACCCT-C-TCTNC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGACCA-TCC--TTTTCACA-ATAAAT--AC-CGTCGCCA--TCACT-ATCATCG-TC-AC---CTGTCA-GACCA-C-C--ATGG-TTCATGTCACATGCA--TGTTCCGTACG--TGAATA-----CGTATGGTC-AAGACTGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGCGATT-ATTTTTCAGGACTTGGAA-AACTTGTTCG-AAAGTTATTTTTG
gi|1 : TAAACAAACTCTACAAAAATATCAAT-TAAA-A--TAATT-TTATTTCAGAATA-------------TGCCCA------CG-------ATATTGAC-AA-GATA-TCTTCAAGAGT-ATACGTGTA----CATTTATTT-----TA--TACTCTG----AAAAGCTGTTATACA-CAT-T-ACAATGTTGAGGAG--GTTGGACACATGCT--ACACATATTACAACATATAT------------ATGGTGCCCGTAAGTATAAA--AT-CCA-CCTCCTCCAG--CAATAAAGTCTGCATATGATAATTATTTTACAATATAA-AACACTTTATGCCTGGGCTACAATGGAACGATTCAAAAGAAATTTTTGAAA-TAA-A-TATAAATAA-ACAT------ATTAAAGAA-AATCTTG-TAATATCTTTTTGGAAACG-----CATGCC--ATAAAACG---AGA-TAATTAGTCTGCAGGCAGTGCGTCCAGGTGTTT-TGTCGACAGAAAATTTGAATCT----TAAACAC-------AG--CAGACGGAC-------AAGG-TGTGA----TTA--CCT--ATG-G-T-ATG---CAT--TGAATGATCC--A-----ACTTGATGT----------GGTT----AAGATGGA-AAATG--ATTCACA-ACAC---CT---GGCTCAT-AGTTTAA-TTCACA-A-AAATT--------GATGTTA--CAGTGATTTTTAAAAATA-------------GTACCAC---A-A---------TGAT--A-TAATTATG--CTTTGC--CTTACTAATAA---TCC---CATA-TG-------------TCTTTCT-TGAACAC-CAG--TG-----TGAATAAACT--GCAATGTCTTCGCCCAC--A----CT-T-----AT----CAACATC----T-TT-TG--C-AGA--TTGGA-A-GCACCAA----TA
gi|11 : agctcttgtaatccaacgttttgattcttaagatctttgatcatgtcaacgatcatatccggcttcatcgactttgcagatccttcctagtttctcctgtaaaatatgataatttgaaagttttatacccttgtcatgaaatatccaggacatatatatagtattaggtttttttgtcttctgtcatgnnnnnnnnnnnnnnnnnnnnnnnnnatacagctaaactatatggtactatccatctcaacaatgcaagagattttgactttggatatatattcgccattgatatatttggttcagggggacggtatgtcgtacttgtacataatatatacatattgtgttgtttgaaaaaattcccgattattgaaataaataaagttatagacttttgattttcggcccatctgtggactaacagacctggtcagtattggtatgaccaaagcaaagtctgaggtcaaccaattacttgacagtctgtatgagtcggatagatccttatcaatgtctaaattgtgtaatgttttagtttgtaataaatgtaatttacatattttatgtatttaacagaaggtgttgttaacaaacctgcaacatagacttttcaggaggggttgccccttcttctgcaaggcattgtagagcatattctcgcagcctggttttctggcatcggaacatcatagaatcctttcagcacctttcccggttgtttatctccatatcaacctgtactgtgtgagtccccaaattgaatag-TAAA-A--TAATTCT-ATTTCAGAATA-------------TGCCCA------CG-------GTATTGA----AAATA-TCTTCAAGAGT-A--TGTGTA----CATTTATTT-----TA--C---CTG----AAAAGCTGTTATA
gi|16 : A----CATTTATTT-----TA--C---CTG----AAAAGCTGTTATA
gi|2 : TACAGAATT-TCAATATAAA-AAATACCTCTCATTTAAGAATACCCATTCATCCAGTGCCCATATGTACGCCACTAAGTATT-AT-AAA--TA-TCTTCAAGAGT-A-ACGT-TATGATCATTTATTCCTCTCTA--CG--CTGTTTAAAAAGCTGTTTTACA-CATGT-GTCATGTTA--GAGCCGTTGGGTACGTCCCTGACACATAAAATAA-ATATATTTGTAGAATTATATGGTGGCCTT---T-TGAAATATATCA-CCTCG---AGGGCAATAA-GT-TGCAAATGGAAATTA-TTTACAAT----------------------------------GATA-AAAAGAATTGTTCCGAG-TAATA-TATTAATAATACCCATGTAAATTAGG-AATTATAGTGTTAACAT-TTTTCGGAAA-AGAAGCCATA-CTGACAAAACGCCAGGATTAATTAG--TGCA-GCAG-GTGT-CAGGT-TATATGT-GA-AG-AA--TTGCA-CTTCCCTAAACACCCCCGTTAGTTTATAC--ACTACCCAAAAGGATGTAAGTTTTTACTCCT--ATGTGTT-TTG---C-TAATGAATGAA-CCTA-----A--TGATGTATAGAAAGACAGTTTAAGAA-AT-GATAAATGAAATTCACACCCACTGACTAGAGACTCATAAGTTT-ATTGCACA-ATTAATTATGACCCCCATGTTACTCAGTGA-TTTTAAAAGTAAATCCCCTTGATCTTACCACCATA-AATGATGATGTG-T--ATTAA-TATG--CTT--C--C-------CAAACTTCCATTTTAA-TGATGTTCATATAGTTCTGTAT-TGA--G--CAG--TTGAGAGTGAAT-AACT--GCAGTGT-CT--TCCACCTATCTCCT-TTTAGAATAGTGC-ACACC-CATTGTC-TGACC-AGA--TTGGA-AGG--CCAA----TAA---------TCCCGAACTCTTTAAAATCCTTGTGACCCTGCGTCTACTTCATCAA----ATCG-ATTAAATT----CCCG-TTAT
gi|3 : gttttaggtttgtaataaatgtattgactgtatattatggaagtgttacattcctgcaatcatgactttcaggagggtggccctatttctcagcattgtagcattttctgcatcgaacatcaatagttcaacatctccggtttaatctccaatagcaatgtactgtgtctcaaaatttgaatacacaTAAACAA--TC-ACAAAAATATCAATCTAAATA--TAATT--TATTTCAGAATA-------------TGCC-A-------G-------ATATTGACCAAGGATAATCTTCAAGAGTTA-GCGTGTA----CATTTATTT-----TATAC---CTG----AAAAGCTGTTATACATCAT-TTACAATGTTGAGGAG--GGTGGACACATGCT--ACACATATTACA-CATATATC-----------ATGGTGCCGTT-AATATAAAACAT-CCAACCTCCCTCAG--CAATAAAGT-TGCATATGATAATTA-TTTACAATAT-ATAACA---TATGCT--GGC-A-AATG---CGATT-AA--GAAATTTTTTGAAATAA-AATATAAATAA-ACA--------TTA-A-AA-CATACTG-TA-TATCTTTTTGGAAA-G-----CATG-C--A--AAA-G---AGAT-AATTAGT--GCAG-CAG-GCGTCCAGGT--GT-TGT-GA-AGAAA--TTGCA-CT----TAA-CAC-------AG--CAGA---ACT-----AA-GG-TGTGA---TTTA--CCT--ATG-G-T-TTG---C-T--TGAATGAT-G--A-----A-TTGATGT----------GGT-----AA-AT-GA-AAATG--ATTCACA-ACAC---CT---GGCTCAT-AGTTT-A-TGCACA-A-AAATT--------GATGTTA--CAGTGATTTTTAAAAATA-------------GTACCAC---A-A---------TG-T--A-TAA-TATG--CTT--C--C-------TAA---TCC---ATAA-TG-------------TCTTTCT-TGAACA--CAG--T------TGAAT-AACT--GCAATGTCCT--TCCAC--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----TAC---------ACCC-AACTC--TACAATCCTTGT-ACCCT-C-TCTAC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGGTCA-TCC--TTTTCATA-ATAAAT--AC-CGTCGCCA--TCACT-ATCATCG-TC-TCGTACTGTCA-GACCA-CAC--ATGG-TTCATGTCACATGCA--TGTTCCGTACG--TGAATA-----CGTATGGTC-AAGACAGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGTGATT-ATTTTTCAGGACTTGGAA-AACTTGTTCA-AAAGTTAGTTTTG
gi|4 : tTTA--CCTTTATG-G-TGTTGTTCC-T--T-AATGAT-C--ATGAGTA-TAGCTGT----------GG------AA-AT-GA-AAATG--ATTCACA-ACA----CT---GGCTCAT--CTTT-A-TGCACACA-AAAAT--------TATGTTA---AGTGATTTTT-AAAATA-------------T--CCACT--ATA---------TG-TTCA-TAA-TAGGTTCTT--CATC-------CAA---TCA---TTAACTGT------------TCTTTCTCTGACTAGCCAGTAT------TG-AT-AACTTGACA--GTCCT--TCC-C--A----CTCT-----GTC---C-ATATCAC-TT-TCGTA--CAAGATTTTAGACA-A--CCAAGGACTACCAGTCATAAACTC-AATTT--TACAA-CCTTCT-ACCCT-C-TCTTCCGT----ATAATATCATTTTAAATTTTCCTCTGC-TATATCTCGTCAATCGAATTGGCTCCAACACT-GACCAGTCCTTTTTTCACACATAAATTAACTTGTCGCGATTTCACTAATCCACG-TCTAT---CTATCAGGACTA-C-CATATGGTTTCATGTCACATGCATTTTTTCC-TACGTTTGCATATTTATCTCATGGTCTAAGACTGAAAATCA-TAAGTAATTTAAATTAATTCTTAATTTTACTGCAATTCATTTTTCAGGACTTGGAACAACTTTGACGAAAAGTTATTCTT
gi|5 : --ATTCACA-ACAC---CT---GGCTCAT-AGTTT-A-TGCAAA-A-AAAAT--------TATGTTA--TAGTGATTTTTAAAAATA-------------TTCCCAC---A-A---------TG-T--A-TAA-TATG--CTT--C--C-------CAA---TCC---ATAA-TG-------------TCTTTCC-TGAACA--CCG--T------TGAAT-AATT--GCAGTGTCCT--TCCAT--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----GAC---------ACCG-AATTC--TACAATCCTTCT-ACCCT-C-TCTCC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGACCA-TCC--TTTTCACA-ATAAAT--AC-CGTCGCCA--TCACT-ATCATCG-TC-A----CTGTCA-GACCACC-C--ATGG-TTCATGTCACATGTA--TGTTCCGTACG--TGAATA-----CGTATGATC-AAGACTGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGCAATT-ATTTTTCAGGACTTGGAA-AACTTGTTC--AAAGTTATTTTTGtacgaaatcgtgaatctaactcaccactg
gi|6 : CAC---A-A---------TG-T--A-TAA-CATG--CTT--C--C-------CAA---TCC---TTAA-TG-------------TCTTTCC-TGAACA--CAG--T------TGAAT-AACT--GCAGTGCCCT--TCAAC--A----CT-T-----AT----C-ACATC-C-TT-TC-TG--C-AGA--TTGGA-A-G--CCAA----GAC---------ACCC-AACTC--TACAATCCTTCT-ACCCT-C-TCTCC-------A----ATCA-TTTAAATT----CCTGCTTATATC-CG-CA--TGAATTGGCTCCAACACCGGACCA-TCC--TTTTCAGA-ATGAAT--AG-TGTCGCCA--TCACT-ATCA--GACC-AC---CTG----GGC---C-C--ATGG-TGCATGTCACATGCA--TGTTCCATACG--TGAATA-----CGTATGGTC-AAGACTGAAA--CATTAAGTAATT--AATCAATT-TCAATTT---TGCAATT-ATTTTTCGGGACTTTGAA-AACTTGTTC--AAAGTTATTTTTGatagcatataatctgctcaccagctg
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TACTGAATAAATAAGTTATAGACTTTTGATTTCGGCCCATCTGTGACTATACAGACCTGGTCAGGTATTGGTTGACCGAAGCAAAGTCAAGGTCAACCAATACCTGACCAGGTCCATATAGTCAGGATAGACCTCATCAAAAATCTAAAATGTGTAATGTTTTAGGTTTGTAATAAATGTATTGACTGTATATTATGGAAGTGTTGTTATATACCTGCAATCATGACTTTCAGGAGGGGTAGCCCTTTTCTCAGCATTGTAGCATATTCTGCATTTTCTGCATCGAACATCATAGTTCAACACCTTTCCGGTTTTATTTCCAATCAATGTACTGTATCCTACAAAATTTGAAT
Unaligned ( gi|8 ): ATGTTTTAGGTTTGTAATAAATGTATTTAATGTATATTACAGAAGTGTTGTTACAAACCTGCAATCATGACTTTCAGGAGGGGTTGCCCTTTTCTCAGCATTGTAGCATATTCTGCATTTTCTGCATCGAACATCATAGTTCAGCACCTTTCCGGTTTTTATCTCCAATCAATGTACTGTGTCCTACCAAATTGAA
Unaligned ( gi|9 ): CTGATCATTCAATAAAGCAGTTATTGAATTTTGATGAGGTCTACTTCAGTGACCTATATCAGAACCGGTCAGTATTCAGTGGACCAAACACTGTAGATATGGAGGCGACTCAAATCTGACAGGTGCAATATCAGCA
Unaligned ( gi|10 ): ACAATTACTGAATTTCGATTAGGTCTACTCGTGCATATACGGACCTGGTGCAGGTATTAGTTGGCCGAGACCGAAAACCGAGGATAGCCAAAC
Unaligned ( gi|12 ): ATACAATAAATTGACTTTTAATTGGGTGTGTCCTTGATGATATGGACCTCTGATCAGGTATTGGGTGGCTGAAGGCCAAAGTCAA
Unaligned ( gi|13 ): TTGATCAACCAATGCCTGAACAGGTTCCTGTAGTCATGAGTAGACCTGATCAAAAGTCAATATCAATAGTTGTATAAA
Unaligned ( gi|14 ): TACATGACTTTCGATGAGGTCTACTCTTGGCTATACAGACTTTGTCAGGCAGTGGTTGACCGAGGCCATAGGCTGA
Unaligned ( gi|15 ): AGTTCAACACATTTCCGGTTTTATTTCCAATCAATGTACTG