lowQualScore : 111111111111111111111111111111 11111111111 2222222222222 111111111111111111111111111111111111 1111111 222222222222 22222222222222222
lowQualScore : 33333 11111 66666666666666 33333333333333333 111 1 11 44444444444 44444444444444444 88888888888888888888888888888888888 22 11 55555555555555 88888888888888888 333333333333333333333333333333 33 1 88888888888 222 22 1 2222222222222 1 22 666666666666666666666666666666666666 22 1 11 1 1 4 1 1 3333333 1 1 000000000000 1 777 00000000000000000 11 33 4444444 55 4 4 4 77777777 55 4 1 77777 4 222 1 4 4 1 55 4 4 1 33 1
lowQualScore : 11111 3 66666 5 11111111111111 1 99999999999999999 999 4 1 4 4 66 55 99999999999 00000000000000000 00000000000000000000000000000000000 3 11 6 66 99 11111111111111 55555555555555555 55 1 1 6 222222222222222222222222222222 44 5 11111111111 111 11 6 6 7 6 0000000000000 7 11 6 6 999999999999999999999999999999999999 11 5 22 6 6 5 6 5 0 6 7 6 6 5 6 6 0000000 7 5 555555555555 5 6 000 6 99999999999999999 6 22 22 7777777 77 0 0 6 0 33333333 55 0 5 77777 0 333 7 0 0 6 7 55 0 0 7 6 6 6 44 7
lowQualScore : ..... . ..... . .............. . ................. ... . . . . .. .. ........... ................. ................................... . .. . .. .. .............. ................. .. . . . .............................. .. . ........... ... .. . . . . ............. . .. . . .................................... .. . .. . . . . . . . . . . . . . ....... . . ............ . . ... . ................. . .. .. ....... .. . . . . ........ .. . . ..... . ... . . . . . .. . . . . . . .. .
lowQualScore : 00000 5 77777 0 44444444444444 7 00000000000000000 555 3 0 0 0 55 55 99999999999 66666666666666666 00000000000000000000000000000000000 7 77 0 55 00 55555555555555 00000000000000000 33 0 0 0 888888888888888888888888888888 00 0 00000000000 000 00 0 0 0 0 0000000000000 0 00 0 0 000000000000000000000000000000000000 00 0 00 0 0 0 0 0 0 0 0 0 0 0 0 0 0000000 0 0 000000000000 0 0 000 0 00000000000000000 0 00 00 0000000 00 0 0 0 0 00000000 00 0 0 00000 0 000 0 0 0 0 0 00 0 0 0 0 0 0 00 0
consensus : CCCTATTGATT-TGAGGTCA----CAAGGTC-AAGGGTCA----ATC----A--CTGGACAT--AG--C--G--A---TATTGT-CCGCTCAATA-T-CTT-GAGAA--CCCTT-TGCTTG-GCAGACA-TCAAACCTTGGT-ACACTGGTTCTACCT-A-GG-GTAGA-TGA--------TCN-----ATTTTGAGGNCAC-AGGTCANNCTNCTCTGGACAGTCCATNCAGNATGTTGT-------------TGAGAACNTTCTACTTGACAGACATCAAA----GTACACTGGTTCACTGGTACGCCCAAAAGAGCAGATAGCGACATTAAGTTTTGTGAAAATATCTT----------GAAATCAGTTTTATCAGAGTGCTAATTTATATCAGACGTATTTTCATTTTCATAATTACCGGCAAGCAAATCTTTATTATCCCATTATCATTCATGAATAGTTTAAAC-------------TAATTAGCCACTGAACTCAAGATAAACGCAGCA--GACA--AAGTT-ATGAGGATGAACACCAACACGCAACAACAACCAAGGTATAACAGTAAAAGGTCAGGAAATGGAAGAAGTGTCTAGCTATTTGTACCTAGGTGGAATGGTAAAA-CAACAGGAGGAACAAATGAAGACATCCAGAGAAGACTAGCCCTAGCAAGATCTGCATCTTTTAGCGATAAAGATACATGTAGTTTATCTGATCTGCCATATAAATGATATCCTGAGAAGTAAAGGATTGGTGGAGGAGAGTCAACACAGTTGTACAT---CAACATAACTAAAATCATAAC-AAAA------------ATTGCGTAAAAGCATTTAATATACAACCTGTCTGCACAGCAATTTGATGAATAAATGTTAAAACA-GTAGCCGTAGCCAATATAA-CATGTAAA-TAAACAGATCTAAAAACATACAAATGT-TAAAAAAGTGAAGATTC-ATAACTCCAACAA-CATG-A-ATCGTTATATAACCAGATTCATT-TTAAGTGTAAAATGGTTAGTATA-CTATCTTGTATTAAATTTTTTGACATCAATTATAATAACCGAAATATATATCATCTGTGACACAAAAG--ATAACATGCAAATGAC-ACAGTGTTTTATGTTCATTAAAATATCACGACACAGCACGATATTTGCCTGTATAAAACAACGAAGATTATAATCTTTTAAACAATAACGAA
Reference ( gi|1 ) : CCCTATTGATCGTGAGATCA----CAAGGTC-AAGGGTCA----A------A--CTGAACAT--GG--T--A--A---CATTGT-ATGCTTAGTA-T-CTG-GAGAA--CCAAT-TG-TTGCACAGAC--TTAAATCCTGGT-ATACTGGTTCTATCT-A-GGCGTAGA-TGA--------TCT-----ATTTTGAGGCCACCAGGTTATCCTTCTCTGG-----CTATACAAGATATTGT-------------TGACAACTCTCTATTTGACAGATACCAAA----GT-CA---G-------G-ACGCCCGGAAGAGTAGATAGCGACAAAAACTTTTGTGAAAATATCTTTATACAAATGAAAATAATTTTTATCAGAGTGCTAATTTATATCAGAAATATTTTCATTTTCATGATTACCGGTAAGCAAATCTTTATAATCCCATTATCATTCATGAATAATTTAAACATGTACTATAGTCTAATAAGCCACTTGACTCGAGATAAACACAGCAAAGACATAAAGTTTATGATG-TGAGAA--ATTGTG-AACAACACTCAAGGTATCACAACAAAAGATCAGGAAATGGAAGAAGTGTCTAGTTATGTGTACTTAGGTGGAATTGTAAAAACAACAGGAAGAACAAAAGAAGATATCCGGAGAAGACTAGGCCTAGCAAGATCTGCATCTTCTAGTGATAAAG---C---TAGTTAATGTGATCTGCCATATAAATGATATC------------GGATTGGTGGATGAGAGTCAACATAGTTGTACATTATCAACATAACTAAAACCATAACCAAAACTGGATCAATATATTGCGTAAAAGCATTTAATATATAACCTACCTGCACAGCAATTATATGAATAAATGTTAAAACAAGTGGC-GTAGCCAATATATTCATGTAAAATAAACAGATCTAAAAACATACAAATGTATAAAAAGGTGAAGATTCCATAACTCCAACAAACATGTATATCGTTATA--ACCAGATTCATTATTAAGTGTACAATGGTTAG-AGACCTATC-TGTATTAATTGTTATGACATCAATTAT-ATAACCG-AGTATATTTCATCTGTGACACAAAAGACATAACATGCAAATGACAACAGTGTTTTATG-TCATTAAAATATCACGACACAGCACGATTTTTGCCTGTATAAGACGACGAGGATTATAATCTTAAAAACAAAAACGAA
gi|13 : CCTTATTAATTTTAAGGTCA----CAAGGTC-AAG-------------------TTGGACAT--AG--TAAA--A---TATTAT-CTGCTCAATA-T-TT--GAGAA--CC
gi|3 : ctgacttctcagaagcagtaatgaccCCCAAATGATTATGAGGTCA----CATGTTG-AAGGGTCA----A------T--CTGGACAT--AA--C--A--A---TAATAT-CCGCTCCATA-T-CTT-GATAA--TCTTT-TGCTTG-ACAGAC--ggt
gi|5 : gtaatgattttcatatgtaggttggttataagaagaggaatcctatttattttcatgtcaagggtcaatccactctggatataggatgataatgtccgctcaatgtcttaagaacccattgacaaacatcaaactttgtactccgataaaatctatggggtgttctttccttgacagacttcaaacttggaacacCCCTATT-----TGAGGTCA----GAAGGTC-AAGGGTTA----A------at
gi|9 : cccttagaagaggcgtatggtgcttagcttctccaaattgatcggcaaaacactcaatatcttgggtaccattcacttactcgtaatgctatttcatatgttggtagaagaggacTGAGATAA----CAAGGTC--TGGGTCA----GTCTTCTC--CTGGACAT--AG-----G--A---TATTGTCCCGCTCATTA-TCCTT-GATAATTCC-TT-TGCTTG-GCAGACCATCAAAC----GTAACACTGGTTCttcattccggacataaggtgattctgttcactca
gi|8 : tattttatttGAGGTCATAATCAAACGC-AAGGGTTA----A------A--CTAGACAT--AGCAT--G--A---CATCGT-CTGCTTA-TA-T-CTGTTAG-----CAATACC-TTGAACAGAC--GTCAAACCTGAT-ACACC-GTTCT-----------TAGA-TAA--------CCCTATTAATTTTGAGccc
gi|18 : GGTCA-----AAGGTC-AAGGTTCAGTTCA------AT-CTGAACAT--AT--G--A--AGATTATTGT-CTGCTCA--A-T-CTT-GAAAA--
gi|4 : tatagAAGGTCAAAGGGTCA----ATCT---ACTCTGAACAT--AG--A--AAGA---TATTGT-GCGCTCAATATT-CTT-GAGAA--
gi|3 : gggggcatatatgtttgcacctgtcagccgatataccagtgttgtactgtgatcttaagaacgctttgcttgccagacattaaacttgttctactggcttctcttttcataagaaaaagtagatgattcctttggttttgaggtggcacaaaggttaGTC-AAGGGTCA----ATCC---ACTCTGGATATAGGA--T--G--A---TAATGT-CCGCTCAATG-T-CTT-AAGAA--CCCAT-TG-----ACAAACA-TCAAACTTTG----TACTactgtcttcttgacattaaactt
gi|15 : gtaatgattttcatatgtaggttggttataagaagaggaatcctatttattttcat--A--A---TATCGT-TCACTCAGTA-T-CTT-GAGAA--CCTTT-TGCTTGAGCAGACA-TCAAAccgataaaatctatggggtgttctttccttgacagacttcaaacttggaacaccccaaatgattatgaggtcacatgttgaagggtcaatctggacataacaataatatccgctccatatcttgataatcttttgcttgacagacat
gi|7 : aagggtcatatcctttccgttacaggaaCTCAGTA-T-CTT-AAGAA--CTCTT-TG-CTCGACAGACA-TCAGA-CTTGGT-ATACTGGgttgta
gi|2 : tattttatacccctctttaaaatgggtgaggaatattaattagtttgcatgtgtccgtcggttagtaggcatagtgttttacA-T-CTG-GAGAA--C------G-TT-CGCAGAC--TTAAA-------------GGTTCTATCT-AAGGAGTAGA-TGACTCGACTATCT-----ATTTTGAGGCCACAAGGTCATCCTACTCTGG-----TTATA--AGATATTGTCCGATCAACATTTTGAGAACTTTCTATTTCACAGACATCAAA----GT-TA---GTTCACTGGTACCCCCA-AAGAGTAGATAGCGACATTAAGTTTTGTGAAAATATCTT----------GAAATCAGTTTTATCAGAGTGCTAATTTATATCAGACGTATTTTCATTTTCATAATTACCGGCAAGCAAATCTTTATTATCCCATTATCATTCATGAATAGTTTAAAC-------------TAATTAGCCACTGAACTCAAGATAAACGCAGCA--GACA--AAGTT-ATGAGGATGAACACCAACACGCAACAACAACCAAGGTATAACAGTAAAAGGTCAGGAAATGGAAGAAGTGTCTAGCTATTTGTACCTAGGTGGAATGGTAAAA-CAACAGGAGGAACAAATGAAGACATCCAGAGAAGACTAGCCCTAGCAAGATCTGCATCTTTTAGCGATAAAGATACATGTAGTTTATCTGATCTGCCATATAAATGATATCCTGAGAAGTAAAGGATTGGTGGAGGAGAGTCAACACAGTTGTACAT---CAACATAACTAAAATCATAAC-AAAA------------ATTGCGTAAAAGCATTTAATATACAACCTGTCTGCACAGCAATTTGATGAATAAATGTTAAAACA-GTAGCCGTAGCCAATATAA-CATGTAAA-TAAACAGATCTAAAAACATACAAATGT-TAAAAAAGTGAAGATTC-ATAACTCCAACAA-CATG-A-ATCGTTATATAACCAGATTCATT-TTAAGTGTAAAATGGTTAGTATA-CTATCTTGTATTAAATTTTTTGACATCAATTATAATAACCGAAATATATATCATCTGTGACACAAAAG--ATAACATGCAAATGAC-ACAGTGTTTTATGTTCATTAAAATATCACGACACAGCACGATATTTGCCTGTATAAAACAACGAAGATTATAATCTTTTAAACAATAACGAAggg
gi|23 : AATTTTGGT-ACACTGGTTCTACCTAA-GACGTAGGTTGA--------T-G-----ATTTCGAGGTCA-CAGGcgtcattttc
gi|11 : -----ATTTTGAGGGCAC--AGTCAAGCTT-TCTAGACAGTCCATTCAGTATGTTGT--------------GA--ACCTTTTGCATGACAGACATCAAATTTTGTACACTGG-------A-ATGTTCAAAAGAGCAGA
gi|12 : tattgT-------------TGAGAACACTCTACTTGACAGATATCAAA----
9 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): ATATTGATATTTCATATGTGTAAGATATAAAAAGATGATGCCTAATTATTACATTATTGAGGGTCAATTATCTGTGGTCATAGGTAGATAGTGGTCATTCAGTATGTTGAGAACCCTTTCCTAACAAAACAAAATTCTAACTTGGTGCACACAATCTA
Unaligned ( gi|10 ): GCATATTAGTTTGCACCTGTTGGTCAGAAGACCAATTGTTGTTCACTCAGTATCTTAAGAACACTTGTGTTTCATGGCAATACAAATGTTTTAGACATTGTATTTCTCTATTCA
Unaligned ( gi|14 ): TCAGTGTCTCGGGAACCATTCACTTCGTTGTATTATGAATGTTATGAGTGGAAGAGGATTCCTGGTGATTTTCAGGTCAAAAGGTGATGGGT
Unaligned ( gi|16 ): TATTGGTTTCTGCCTGTTGGTCAGTTGCTAGTGGAAATGTTGATTGCTTAGTACCTTAAGAACCCTTGCTTGACAGCAA
Unaligned ( gi|17 ): CTCTTGAAAAAATGCATATTGGTTGCGCTTGTTGATTGTATATGAAGTGTTGTTCACTCAATATCTTACTT
Unaligned ( gi|19 ): CATAATTTGGTTTGCACAAGTCAATTGAAAGACCAAGTGTTGTCTGCTAAATATCTTGAGAACCCTT
Unaligned ( gi|20 ): TCACATAGTCCAAGGTCATGAGTCAGTCCACTCTGGACATAGCAAGATATTGTCCACACATCTT
Unaligned ( gi|21 ): ACATTTGGTTTGTGCTTGTTGGTCAATGGACCAAATGTTGACCACTCAAAATCTGAACAAC
Unaligned ( gi|22 ): AGGTCACAAGATCGAAGGTCAATCCACTCTTTACATAGGAAGATACTGTCCACTCAT
Alignments
lowQualScore : 111111111 1111111111111 111111111111
lowQualScore : 1 11111 333333333333333 33333 11111 1111 5555555555555555555555555555555555555555555 6666666666666666666 99999999999999999 11 1 1 000000000 1 8888888888 1111111111111 22 22 2 1 11 1 2 3333333 444444444444 333 2 000000000000 2 1 22 2 2 2 2 333 11 2 22222 1 1 1 22 2 1
lowQualScore : 0 3 5 00000 3 777777777777777 77 33 55555 5555 2 2 2 2 2 5 3333 3 99 3 3 77777 55555 4 4 0000 7777777777777777777777777777777777777777777 99 1 3333333333333333333 22 33 88888888888888888 22 55 0 55 3 0 11 1 111111111 6 6 6 4 0 88 2 7777777777 2 2 2 4 0000000000000 4 2 77 77 0 2 5 2 77 4 5 3 3 3 2 0 4 2 2222222 4 2 666666666666 2 555 0 222222222222 66 0 5 44 0 0 0 0 111 88 0 3 00000 5 4 3 4 5 5 4 77 0 5 4 88 4
lowQualScore : . . . ..... . ............... .. .. ..... .... . . . . . . .... . .. . . ..... ..... . . .... ........................................... .. . ................... .. .. ................. .. .. . .. . . .. . ......... . . . . . .. . .......... . . . . ............. . . .. .. . . . . .. . . . . . . . . . ....... . . ............ . ... . ............ .. . . .. . . . . ... .. . . ..... . . . . . . . .. . . . .. .
lowQualScore : 2 3 7 55555 3 333333333333333 99 99 11111 3333 4 6 4 4 4 0 4444 5 88 1 3 55555 77777 0 4 6666 2222222222222222222222222222222222222222222 22 0 0000000000000000000 00 55 00000000000000000 22 00 5 88 2 0 88 2 000000000 7 0 7 0 7 00 5 5555555555 5 5 5 0 0000000000000 0 5 55 55 0 5 5 5 55 0 0 0 0 0 5 0 0 5 5555555 0 5 555555555555 5 000 0 555555555555 55 0 0 00 0 0 0 0 000 55 0 0 55555 5 0 0 0 5 5 0 55 0 5 0 00 0
consensus : CCCTATTGATT-T-GAGGTCA----CAAGGTCAA-GGGTCAA-T-C----A--C---T--GGACATA--G--C--GA----TATTGTCC-GCTCAGTA-TC-T-TGAG-AAC-CCTTTGCTTG-AC-AGA-CA----TCAAACCTTGGT-ACACTGG-T----TCTA----CCTAAG-----G--TAGA-TGA--------TC-----GATTTTGAG--GNCAC-A-----------------GGTCANCCTNCTCTGG--ACA-GG-A-------GTCCGTTCAANATATTGTTGAG-AACTTTCTACTTGACAGACATCAAAGT----T-GT-CACTGG-ACGCCCGAAAGAGTAGATAGCGACANNAANTTTTGTGAAAATATCTTTATACAAATGGAAATNANTTTTATCAGAGTGCTAATTTATATCAGACGTATTTTCATTTTCATGATTACCGGCAAGCAAATCTTTATNATCCCATTATCATTCATGAATAGTTTAAACATGTACTATAGTCTAATNAGCCACTNGACTCGAGATAAACGCAGCAAAGACATAAAGTTTATGANGATGAGNACCANCGCGCAACAACANCCAAGGTATNACAGCAAAAGGTCAGGAAATGGAAGAAGTGTCTAGCTATNTGTACCTAGGTGGAATNGTAAAAACAACAGGAGGAACAAANGAAGACATCCGGAGAAGACTAGNCCTAGCAAGATCTGCATCTTCTAGCGATAAAGATACATGTAGTTNATNTGATCTGCCATATAAATGATATCCTGAGAAGTAAAGGATTGGTGGANGAGAGTCAACACAGTTGTACATTATCAACATAACTAAAACCATAACCAAAACTGGATCAATATATTGCGTAAAAGCATTTAATATACAACCTGCCTGCACAGCAATTNNATGAATAAATGTTAAAACAAGTGGCCGTAGCCAATATATNCATGTAAAATAAACAGATCTAAAAACATACAAATGTATAAAAAGGTGAAGATTCCATAACTCCAACAAACATGTATATCGTTATATAACCAGATTCATTATTAAGTGTANAATGGTTAGTANACCTATCTTGTATTAANTNTTNTGACATCAATTATAATAACCGAAGTATATNTCATCTGTGACACAAAAGACATAACATGCAAATGACAACAGTGTTTTATGTTCATTAAAATATCACGACACAGCACGATNTTTGCCTGTATAAGACGACGAGGATTATAATCTTNNAAACAANAACGAA
Reference ( family-502 ) : CCCTATTGATT-T-GAGGTCA----CAAGGTCAA-GGGTCAA-T-C----A--C---T--GGACATA--G--C--GA----TATTGTCC-GCTCAATA-TC-T-TGAG-AAC-CCTTTGCTTG-GC-AGA-CA----TCAAACCTTGGT-ACACTGG-T----TCTA----CCTAGG-----G--TAGA-TGA--------TC-----NATTTTGAG--GNCAC-A-----------------GGTCANNCTNCTCTGG--ACA------------GTCCATNCAGNATGTTGTTGAG-AACNTTCTACTTGACAGACATCAAAGTACACTGGTTCACTGGTACGCCCAAAAGAGCAGATAGCGACATTAAGTTTTGTGAAAATATCTT----------GAAATCAGTTTTATCAGAGTGCTAATTTATATCAGACGTATTTTCATTTTCATAATTACCGGCAAGCAAATCTTTATTATCCCATTATCATTCATGAATAGTTTAAAC-------------TAATTAGCCACTGAACTCAAGATAAACGCAGC--AGAC--AAAG-TTATGAGGATGAACACCAACACGCAACAACAACCAAGGTATAACAGTAAAAGGTCAGGAAATGGAAGAAGTGTCTAGCTATTTGTACCTAGGTGGAATGGT-AAAACAACAGGAGGAACAAATGAAGACATCCAGAGAAGACTAGCCCTAGCAAGATCTGCATCTTTTAGCGATAAAGATACATGTAGTTTATCTGATCTGCCATATAAATGATATCCTGAGAAGTAAAGGATTGGTGGAGGAGAGTCAACACAGTTGTAC---ATCAACATAACTAAAATCATAA-CAAAA------------ATTGCGTAAAAGCATTTAATATACAACCTGTCTGCACAGCAATTTGATGAATAAATGTTAAAAC-AGTAGCCGTAGCCAATATA-ACATGT-AAATAAACAGATCTAAAAACATACAAATGT-TAAAAAAGTGAAGATT-CATAACTCCAAC-AACATG-A-ATCGTTATATAACCAGATTCATT-TTAAGTGTAAAATGGTTAGTATA-CTATCTTGTATTAAATTTTTTGACATCAATTATAATAACCGAAATATATATCATCTGTGACACAAAAG--ATAACATGCAAATGAC-ACAGTGTTTTATGTTCATTAAAATATCACGACACAGCACGATATTTGCCTGTATAAAACAACGAAGATTATAATCTTTTAAACAATAACGAA
gi|1 : CCCTATTGATCGT-GAGATCA----CAAGGTCAA-GGGTCAA--------A--C---T--GAACATG--G--T--AA----CATTGTAT-GCTTAGTA-TC-T-GGAG-AAC-CAATTG-TTGCAC-AGA-C-----TTAAATCCTGGT-ATACTGG-T----TCTA----TCTAGGC----G--TAGA-TGA--------TC-----TATTTTGAG--GCCACCA-----------------GGTTATCCTTCTCTGG-------------------CTATACAAGATATTGTTGAC-AACTCTCTATTTGACAGATACCAAAGT---------CA--GG-ACGCCCGGAAGAGTAGATAGCGACAAAAACTTTTGTGAAAATATCTTTATACAAATGAAAATAATTTTTATCAGAGTGCTAATTTATATCAGAAATATTTTCATTTTCATGATTACCGGTAAGCAAATCTTTATAATCCCATTATCATTCATGAATAATTTAAACATGTACTATAGTCTAATAAGCCACTTGACTCGAGATAAACACAGCAAAGACATAAAGTTTATGATG-TGAGAA--ATTGTG-AACAACACTCAAGGTATCACAACAAAAGATCAGGAAATGGAAGAAGTGTCTAGTTATGTGTACTTAGGTGGAATTGTAAAAACAACAGGAAGAACAAAAGAAGATATCCGGAGAAGACTAGGCCTAGCAAGATCTGCATCTTCTAGTGATAAAG---C---TAGTTAATGTGATCTGCCATATAAATGATATC------------GGATTGGTGGATGAGAGTCAACATAGTTGTACATTATCAACATAACTAAAACCATAACCAAAACTGGATCAATATATTGCGTAAAAGCATTTAATATATAACCTACCTGCACAGCAATTATATGAATAAATGTTAAAACAAGTGG-CGTAGCCAATATATTCATGTAAAATAAACAGATCTAAAAACATACAAATGTATAAAAAGGTGAAGATTCCATAACTCCAACAAACATGTATATCGT--TATAACCAGATTCATTATTAAGTGTACAATGGTTAG-AGACCTATC-TGTATTAATTGTTATGACATCAATTAT-ATAACCG-AGTATATTTCATCTGTGACACAAAAGACATAACATGCAAATGACAACAGTGTTTTATG-TCATTAAAATATCACGACACAGCACGATTTTTGCCTGTATAAGACGACGAGGATTATAATCTTAAAAACAAAAACGAA
gi|11 : A--------TT-----GATTTTGAG--GGCAC-A-----------------G-TCAAGCTT-TCTAG--ACA------------GTCCATTCAGTATGTTGT---G-AACCTTTTGCATGACAGACATCAAATT----TTGTACACTGGAATGTTCAAAAGAGCAGA
gi|12 : tTTGTCA-ACTCACTA-TC-T-TGAG-AAC-ACTCTACTTG-AC-AGA-TA----TCAAACTTT-GT-AAACTGA-T----T
gi|13 : tatctatttttaaatcacaaggtgagcaagaatCCTTATTAATT-TTAAGGTCA----CAAGGTCAA-G-----------------T---T--GGACATA--G--TAAAA----TATTATCT-GCTCAATA-T--T-TGAG-AAC-Caccccaagag
gi|15 : ctgacttctcagaagcagtaatgaccA----TATCGTTC-ACTCAGTA-TC-T-TGAG-AAC-CTTTTGCTTGAGC-AGA-CA----TCAAAggt
gi|16 : aagggtcatatcctttccgttacaggaaaGGTCAG-T-T----G--C---T--AG---TG--G--A--AA----TGTTGATT-GCTTAGTA-CC-T-TAAG-AAC-CC-TTGCTTG-AC-AGgttgta
gi|18 : tattggtttctgcctgttGGTCA-----AAGGTCAA-GGTTCAG-TTC----AATC---T--GAACATA-----T--GAAGATTATTGTCT-GCTCA--A-TC-T-TGAA-AAcaa
gi|19 : tatag----TGTTGTCT-GCTAAATA-TC-T-TGAG-AAC-CCTT
gi|2 : cataatttggtttgcacaagtcaattgaaagaccaagA-TC-T-GGAG-AAC------G-TTC-GC-AGA-C-----TTAAA-------------GG-T----TCTA----TCTAAG-----GAGTAGA-TGACTCGACTATC-----TATTTTGAG--GCCACAA-----------------GGTCATCCTACTCTGGTTATAAGATATT-----GTCCGATCAACAT-T--TTGAG-AACTTTCTATTTCACAGACATCAAAGT----TAGTTCACTGGTAC-CCCCAAAGAGTAGATAGCGACATTAAGTTTTGTGAAAATATCTT----------GAAATCAGTTTTATCAGAGTGCTAATTTATATCAGACGTATTTTCATTTTCATAATTACCGGCAAGCAAATCTTTATTATCCCATTATCATTCATGAATAGTTTAAAC-------------TAATTAGCCACTGAACTCAAGATAAACGCAGC--AGAC--AAAG-TTATGAGGATGAACACCAACACGCAACAACAACCAAGGTATAACAGTAAAAGGTCAGGAAATGGAAGAAGTGTCTAGCTATTTGTACCTAGGTGGAATGGT-AAAACAACAGGAGGAACAAATGAAGACATCCAGAGAAGACTAGCCCTAGCAAGATCTGCATCTTTTAGCGATAAAGATACATGTAGTTTATCTGATCTGCCATATAAATGATATCCTGAGAAGTAAAGGATTGGTGGAGGAGAGTCAACACAGTTGTAC---ATCAACATAACTAAAATCATAA-CAAAA------------ATTGCGTAAAAGCATTTAATATACAACCTGTCTGCACAGCAATTTGATGAATAAATGTTAAAAC-AGTAGCCGTAGCCAATATA-ACATGT-AAATAAACAGATCTAAAAACATACAAATGT-TAAAAAAGTGAAGATT-CATAACTCCAAC-AACATG-A-ATCGTTATATAACCAGATTCATT-TTAAGTGTAAAATGGTTAGTATA-CTATCTTGTATTAAATTTTTTGACATCAATTATAATAACCGAAATATATATCATCTGTGACACAAAAG--ATAACATGCAAATGAC-ACAGTGTTTTATGTTCATTAAAATATCACGACACAGCACGATATTTGCCTGTATAAAACAACGAAGATTATAATCTTTTAAACAATAACGAA
gi|20 : GTC-----CAAGGTCAT-GAGTCAG-TCC----ACTC---T--GGACATA--G--CAAGA----TATTGTCC-AC---ACA-TC-T-Tcgtcattttc
gi|22 : tcacataAGGTCA----CAAGATCGA-AGGTCAA-TCC----ACTC---T--TTACATA--GGAA--GA----TACTGTCC-ACTCA
gi|23 : AATTTTGGT-ACACTGG-T----TCTA----CCTAAGAC---G--TAGGTTGA--------T------GATTTCGAG--GTCAC-A-----------------GGt
gi|3 : CCTATTTATT-T-----TCA----T---GTCAA-GGGTCAA-T-CC---A--C---TCTGGATATA--GGAT--GA----TAATGTCC-GCTCAATG-TC-T-TAAG-AAC-CC----ATTG-AC-AAA-CA----TCAAACTTT-GT-ACTCCGA-TAAAATCTA------TGGG-----G--T
gi|3 : gtaatgattttcatatgtaggttggttataagaagaggaatCCCAAATGATTAT-GAGGTCA----CATGTTGAA-GGGTCAA-T-C-----------T--GGACATA--A--C--AA----TAATATCC-GCTCCATA-TC-T-TGAT-AAT-CTTTTGCTTG-AC-AGA-CA----Tgttctttccttgacagacttcaaacttggaacaccccaaatgattatgaggtcacatgttgaagggtcaatctggacataacaataatatccgctccatatcttgataatcttttgcttgacagacat
gi|4 : gtaatgattttcatatgtaggttggttataagaagaggaatcctatttattttcatgtcaagggtcaatccactctggatataggatgataatgtccgctcaatgtcttaagaacccattgacaaacatcaaactttgtactccgataaaatctatggggtgttctttccttgacagacttcaaacttggaacacA-TC-T-TAAG-AAC-GCTTTGCTTG-CC-AGA-CA----TTAAA-CTTGTT-CTACTGGCT----TCTCTTTTCATAAGAAAAAG--TAGA-TGATTCCT---TT-----GGTTTTGAGGTGGCAC-AAAGGTTAAAGGTCAAAGGGTCAATCTACTCTGA--ACATAGAAAGATATTGTGCGCTCA--ATATTCTTGAGAAACTGTCTTCTTGACA
gi|4 : gggggcatatatgtttgcacctgtcagccgatataccagtgttgtactgtgAGGTTA-----AAGGTCAAAGGGTCAA-T-CT---A--C---TCTGAACATA--G--AAAGA----TATTGTGC-GCTCAATATTC-T-TGAGAAAC-TGTCTTCTT------GA-CA----TTAAACTTttaaactt
gi|5 : gggggcatatatgtttgcacctgtcagccgatataccagtgttgtactgtgatcttaagaacgctttgcttgccagacattaaacttgttctactggcttctcttttcataagaaaaagtagatgattcctttggttttgaggtggcacaaATT-T-GAGGTCA----GAAGGTCAA-GGGTTAATT-C----ATTC---C--GGACATAAGG--T--GA----TTCTGTTC-ACTCA
gi|6 : cccttagaagaggcgtatggtgcttagcttctccaaattgatcggcaaaacactcaatatcttgggtaccattcacttactcgtaatgctatttcatatgttggtagaagaggacccctA-GGGTCAA-T-T----A--TCTGT--GGTCATA--G--GTAGA----TAGTGGTC-ATTCAGTA-TG-T-TGAG-AAC-CCTTT-CCTA-ACAAAA-CAAAATTCTAA-CTTGGT-GCAC
gi|7 : atattgatatttcatatgtgtaagatataaaaagatgatgcctaattattacattattgGTCGG-T-T----A--G---T--AGGCATA--G--T--G-------TTTTAC--CTCAGTA-TC-T-TAAG-AAC-TCTTTGCTCG-AC-AGA-CA----TCAGA-CTTGGT-ATACTGG-acaatcta
gi|8 : tattttatacccctctttaaaatgggtgaggaatattaattagtttgcatgtgtcc-GAGGTCATAATCAAACGCAA-GGGTTAA--------A--C---T--AGACATA--G--CATGA----CATCGTCT-GCTT-ATA-TC-TGTTAGCAAT-ACCTTG---A-AC-AGA-CG----TCAAACC-TGAT-ACACC-G-T----TCT-------------------TAGA-TAA--------CCCTATTAATTTTGAG--ggg
gi|9 : TT-T-GAGATAA----CAAGGTCT--GGGTCAG-T-CTTCTC--C---T--GGACATA--G-----GA----TATTGTCCCGCTCATTA-TCCT-TGAT-AATTCCTTTGCTTG-GC-AGACCA----TCAAAC----GTAACACTGG-T----TC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GCATATTAGTTTGCACCTGTTGGTCAGAAGACCAATTGTTGTTCACTCAGTATCTTAAGAACACTTGTGTTTCATGGCAATACAAATGTTTTAGACATTGTATTTCTCTATTCA
Unaligned ( gi|14 ): TCAGTGTCTCGGGAACCATTCACTTCGTTGTATTATGAATGTTATGAGTGGAAGAGGATTCCTGGTGATTTTCAGGTCAAAAGGTGATGGGT
Unaligned ( gi|17 ): CTCTTGAAAAAATGCATATTGGTTGCGCTTGTTGATTGTATATGAAGTGTTGTTCACTCAATATCTTACTT
Unaligned ( gi|21 ): ACATTTGGTTTGTGCTTGTTGGTCAATGGACCAAATGTTGACCACTCAAAATCTGAACAAC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 1 444444444444444 22222222 11 666666666666666666666666666666666666666666666666 11111111111111111111111111111111111111111111111111111 11 111 1 222222 2 1 4444444444 4444444444444 11 11 1 1 11 1 1 3333333 444444444444 222 1 444444444444 1 1 11 1 1 1 1 222 11 1 1 1 1 1 1 11 1 1
lowQualScore : 0 3 5 8888 000000000000000 44 99999999 5555 2 4 2 2 2 2 2 0 2 0 3 3 3 3 7777 22 3 3 9999 4 666666666666666666666666666666666666666666666666 77 1 6 44444444444444444444444444444444444444444444444444444 2 11 5 333 6 2 6 0 444444 6 6 2 22 1 1111111111 1 1 2 1 9999999999999 1 1 88 88 5 1 5 1 77 1 5 1 1 1 1 5 1 1 2222222 1 1 666666666666 1 111 5 666666666666 22 5 5 66 5 5 5 5 222 88 5 1 5 1 5 5 1 1 1 5 5 1 88 5 5 1 22 1
lowQualScore : . . . .... ............... .. ........ .... . . . . . . . . . . . . . . .... .. . . .... . ................................................ .. . . ..................................................... . .. . ... . . . . ...... . . . .. . .......... . . . . ............. . . .. .. . . . . .. . . . . . . . . . ....... . . ............ . ... . ............ .. . . .. . . . . ... .. . . . . . . . . . . . . .. . . . .. .
lowQualScore : 2 3 7 5555 000000000000000 22 88888888 0000 2 9 5 5 5 7 9 9 9 8 3 3 3 6 7777 33 6 6 4444 4 111111111111111111111111111111111111111111111111 99 0 7 99999999999999999999999999999999999999999999999999999 8 55 7 222 7 8 7 0 222222 7 7 0 00 0 5555555555 0 0 5 0 5555555555555 0 0 55 55 5 0 5 0 55 0 0 0 0 0 0 5 0 0 5555555 0 0 555555555555 0 555 0 555555555555 00 5 0 55 5 5 0 5 000 55 5 0 5 0 0 5 0 0 0 5 5 0 00 5 5 0 00 0
consensus : CCCTATTGATT-T-GAGGTCA----CAAGGTCAAGGGTCAA-T-C----A--C---T--GGACATA--G--C--GA----TATTGTCC-GCTCAGT-ATC-T-TGAG-AAC-CCTT-TGCTTG-A-C-AGA-CA----TCAAACCTTGGT-ACACT----GG-TTCTA----CCTAAG-----G--TAGA-TGA-----TC-----GA-------TTTTGAG--GNCAC-A-----------------GGTCAN--CCTTCTCTGG--ACA-GGA-A-T--C-GTCCGCTCAGCATATTGTTGAG-AACCTTCTGCTTGA-CAGACATCAAA-GTTG--T-CACTGG-ACGCCCGAAAGAGTAGATAGCGACANNAANTTTTGTGAAAATATCTTTATACAAATGGAAATNANTTTTATCAGAGTGCTAATTTATATCAGACGTATTTTCATTTTCATGATTACCGGCAAGCAAATCTTTATNATCCCATTATCATTCATGAATAGTTTAAACATGTACTATAGTCTAATNAGCCACTNGACTCGAGATAAACGCAGCAAAGACATAAAGTTTATGANGATGAGNACCANCGCGCAACAACANCCAAGGTATNACAGCAAAAGGTCAGGAAATGGAAGAAGTGTCTAGCTATNTGTACCTAGGTGGAATNGTAAAAACAACAGGAGGAACAAANGAAGACATCCGGAGAAGACTAGNCCTAGCAAGATCTGCATCTTCTAGCGATAAAGATACATGTAGTTNATNTGATCTGCCATATAAATGATATCCTGAGAAGTAAAGGATTGGTGGANGAGAGTCAACACAGTTGTACATTATCAACATAACTAAAACCATAACCAAAACTGGATCAATATATTGCGTAAAAGCATTTAATATACAACCTGCCTGCACAGCAATTNNATGAATAAATGTTAAAACAAGTGGCCGTAGCCAATATATNCATGTAAAATAAACAGATCTAAAAACATACAAATGTATAAAAAGGTGAAGATTCCATAACTCCAACAAACATGTATATCGTTATATAACCAGATTCATTATTAAGTGTANAATGGTTAGTANACCTATCTTGTATTAANTNTTNTGACATCAATTATAATAACCGAAGTATATNTCATCTGTGACACAAAAGACATAACATGCAAATGACAACAGTGTTTTATGTTCATTAAAATATCACGACACAGCACGATNTTTGCCTGTATAAGACGACGAGGATTATAATCTTNNAAACAANAACGAA
Reference ( family-502 ) : CCCTATTGATT-T-GAGGTCA----CAAGGTCAAGGGTCAA-T-C----A--C---T--GGACATA--G--C--GA----TATTGTCC-GCTCAGT-ATC-T-TGAG-AAC-CCTT-TGCTTG-A-C-AGA-CA----TCAAACCTTGGT-ACACT----GG-TTCTA----CCTAAG-----G--TAGA-TGA-----TC-----GA-------TTTTGAG--GNCAC-A-----------------GGTCAN--CCTNCTCTGG--ACA-GGA--------GTCCGTTCAANATATTGTTGAG-AACTTTCTACTTGA-CAGACATCAAA-GTTG--T-CACTGG-ACGCCCGAAAGAGTAGATAGCGACANNAANTTTTGTGAAAATATCTTTATACAAATGGAAATNANTTTTATCAGAGTGCTAATTTATATCAGACGTATTTTCATTTTCATGATTACCGGCAAGCAAATCTTTATNATCCCATTATCATTCATGAATAGTTTAAACATGTACTATAGTCTAATNAGCCACTNGACTCGAGATAAACGCAGCAAAGACATAAAGTTTATGANGATGAGNACCANCGCGCAACAACANCCAAGGTATNACAGCAAAAGGTCAGGAAATGGAAGAAGTGTCTAGCTATNTGTACCTAGGTGGAATNGTAAAAACAACAGGAGGAACAAANGAAGACATCCGGAGAAGACTAGNCCTAGCAAGATCTGCATCTTCTAGCGATAAAGATACATGTAGTTNATNTGATCTGCCATATAAATGATATCCTGAGAAGTAAAGGATTGGTGGANGAGAGTCAACACAGTTGTACATTATCAACATAACTAAAACCATAACCAAAACTGGATCAATATATTGCGTAAAAGCATTTAATATACAACCTGCCTGCACAGCAATTNNATGAATAAATGTTAAAACAAGTGGCCGTAGCCAATATATNCATGTAAAATAAACAGATCTAAAAACATACAAATGTATAAAAAGGTGAAGATTCCATAACTCCAACAAACATGTATATCGTTATATAACCAGATTCATTATTAAGTGTANAATGGTTAGTANACCTATCTTGTATTAANTNTTNTGACATCAATTATAATAACCGAAGTATATNTCATCTGTGACACAAAAGACATAACATGCAAATGACAACAGTGTTTTATGTTCATTAAAATATCACGACACAGCACGATNTTTGCCTGTATAAGACGACGAGGATTATAATCTTNNAAACAANAACGAA
gi|1 : CCCTATTGATCGT-GAGATCA----CAAGGTCAAGGGTCAA--------A--C---T--GAACATG--G--T--AA----CATTGTAT-GCTTAGT-ATC-T-GGAG-AAC-CAAT-TG-TTGCA-C-AGA-C-----TTAAATCCTGGT-ATACT----GG-TTCTA----TCTAGGC----G--TAGA-TGA-----TC-----TA-------TTTTGAG--GCCACCA-----------------GGTTAT--CCTTCTCTGG-------------------CTATACAAGATATTGTTGAC-AACTCTCTATTTGA-CAGATACCAAA-GT------CA--GG-ACGCCCGGAAGAGTAGATAGCGACAAAAACTTTTGTGAAAATATCTTTATACAAATGAAAATAATTTTTATCAGAGTGCTAATTTATATCAGAAATATTTTCATTTTCATGATTACCGGTAAGCAAATCTTTATAATCCCATTATCATTCATGAATAATTTAAACATGTACTATAGTCTAATAAGCCACTTGACTCGAGATAAACACAGCAAAGACATAAAGTTTATGATG-TGAGAA--ATTGTG-AACAACACTCAAGGTATCACAACAAAAGATCAGGAAATGGAAGAAGTGTCTAGTTATGTGTACTTAGGTGGAATTGTAAAAACAACAGGAAGAACAAAAGAAGATATCCGGAGAAGACTAGGCCTAGCAAGATCTGCATCTTCTAGTGATAAAG---C---TAGTTAATGTGATCTGCCATATAAATGATATC------------GGATTGGTGGATGAGAGTCAACATAGTTGTACATTATCAACATAACTAAAACCATAACCAAAACTGGATCAATATATTGCGTAAAAGCATTTAATATATAACCTACCTGCACAGCAATTATATGAATAAATGTTAAAACAAGTGG-CGTAGCCAATATATTCATGTAAAATAAACAGATCTAAAAACATACAAATGTATAAAAAGGTGAAGATTCCATAACTCCAACAAACATGTATATCGT--TATAACCAGATTCATTATTAAGTGTACAATGGTTAG-AGACCTATC-TGTATTAATTGTTATGACATCAATTAT-ATAACCG-AGTATATTTCATCTGTGACACAAAAGACATAACATGCAAATGACAACAGTGTTTTATG-TCATTAAAATATCACGACACAGCACGATTTTTGCCTGTATAAGACGACGAGGATTATAATCTTAAAAACAAAAACGAA
gi|10 : ----TGTTGTTC-ACTCAGT-ATC-T-TAAG-AAC-ACTTGTGTTT
gi|11 : gcatattagtttgcacctgttggtcagaagaccaatA-----TT-----GA-------TTTTGAG--GGCAC-A-----------------G-TCAA--GCTT-TCTAG--ACA-G-----------TCCATTCAGTATGTTGT---G-AACCTTTTGCATGA-CAGACATCAAATTTTG--TACACTGGAATGTTCAAAAGAGCAGAcatggcaatacaaatgttttagacattgtatttctctattca
gi|12 : tTTGTCA-ACTCACT-ATC-T-TGAG-AAC-ACTC-TACTTG-A-C-AGA-TA----TCAAACTTT-GT-AAACT----GA-TT
gi|13 : tatctatttttaaatcacaaggtgagcaagaatCCTTATTAATT-TTAAGGTCA----CAAGGTCAAG-----------------T---T--GGACATA--G--TAAAA----TATTATCT-GCTCAAT-AT--T-TGAG-AAC-Caccccaagag
gi|15 : ctgacttctcagaagcagtaatgacc-----------------GGTCATATCCTT-TCCGTT-ACA-GGAAAATATC-GTTCACTCAGTATCTTG---AG-AACCTTTTGCTTGAGCAGACATCAAA-GTTG--T-ggt
gi|15 : aagA----TATCGTTC-ACTCAGT-ATC-T-TGAG-AAC-CTTT-TGCTTG-AGC-AGA-CA----TCAAAa
gi|16 : aagggtcatatcctttccgttacaggaaaGGTCAG-T-T----G--C---T--AG---TG--G--A--AA----TGTTGATT-GCTTAGT-ACC-T-TAAG-AAC-CC-T-TGCTTG-A-C-AGgttgta
gi|18 : tattggtttctgcctgttGGTCA-----AAGGTCAAGGTTCAGTT-C----AATC---T--GAACATA-----T--GAAGATTATTGTCT-GCTCA---ATC-T-TGAA-AAcaa
gi|19 : tatag----TGTTGTCT-GCTAAAT-ATC-T-TGAG-AAC-CCTT-
gi|2 : cataatttggtttgcacaagtcaattgaaagaccaagAACGTTCGC-AGACTTAAAGG-TTCTA----TCTAAG-----GAGTAGA-TGAC----TC-----GACTATCTATTTTGAG--GCCAC-AA----------------GGTCAT--CCTACTCTGGTTATA-AGATATT----GTCCGATCAACAT--T-TTGAG-AACTTTCTATTTCA-CAGACATCAAA-GTTAGTT-CACTGGTACCCCC-AAAGAGTAGATAGCGACATTAAGTTTTGTGAAAATATCTT----------GAAATCAGTTTTATCAGAGTGCTAATTTATATCAGACGTATTTTCATTTTCATAATTACCGGCAAGCAAATCTTTATTATCCCATTATCATTCATGAATAGTTTAAAC-------------TAATTAGCCACTGAACTCAAGATAAACGCAGCA--GACA--AAGTT-ATGAGGATGAACACCAACACGCAACAACAACCAAGGTATAACAGTAAAAGGTCAGGAAATGGAAGAAGTGTCTAGCTATTTGTACCTAGGTGGAATGGTAAAA-CAACAGGAGGAACAAATGAAGACATCCAGAGAAGACTAGCCCTAGCAAGATCTGCATCTTTTAGCGATAAAGATACATGTAGTTTATCTGATCTGCCATATAAATGATATCCTGAGAAGTAAAGGATTGGTGGAGGAGAGTCAACACAGTTGTACAT---CAACATAACTAAAATCATAAC-AAAA------------ATTGCGTAAAAGCATTTAATATACAACCTGTCTGCACAGCAATTTGATGAATAAATGTTAAAACA-GTAGCCGTAGCCAATATA-ACATGTAAA-TAAACAGATCTAAAAACATACAAATGT-TAAAAAAGTGAAGATTC-ATAACTCCAACAA-CATG-A-ATCGTTATATAACCAGATTCATT-TTAAGTGTAAAATGGTTAGTATAC-TATCTTGTATTAAATTTTTTGACATCAATTATAATAACCGAAATATATATCATCTGTGACACAAAAGA--TAACATGCAAATGACA-CAGTGTTTTATGTTCATTAAAATATCACGACACAGCACGATATTTGCCTGTATAAAACAACGAAGATTATAATCTTTTAAACAATAACGAA
gi|20 : atctggagGTC-----CAAGGTCATGAGTCAG-TCC----ACTC---T--GGACATA--G--CAAGA----TATTGTCC-ACAC----ATC-T-Tcgtcattttc
gi|22 : tcacataAGGTCA----CAAGATCGAAGGTCAA-TCC----ACTC---T--TTACATA--GGAA--GA----TACTGTCC-ACTCA
gi|23 : AATTTTGGT-ACACT----GG-TTCTA----CCTAAGAC---G--TAGGTTGA-----T------GA-------TTTCGAG--GTCAC-A-----------------GGt
gi|3 : CCTATTTATT-T-----TCA----T---GTCAAGGGTCAA-T-CC---A--C---TCTGGATATA--GGAT--GA----TAATGTCC-GCTCAAT-GTC-T-TAAG-AAC-CC-----ATTG-A-C-AAA-CA----TCAAACTTT-GT-AC
gi|3 : gtaatgattttcatatgtaggttggttataagaagaggaatCTT-TCCTTG-A-C-AGA-CT----TCAAA-CTTGGA-ACAC-----------------CCCAA------------A-T--------------GA-------TTATGAG--GTCAC-ATGTTGAAG---------GGTCAA-------TCTGG--ACA-TAACAATAAT-ATCCGCTC--CATATC-TTGAT-AATCTTTTGCTTGA-CAGACATtccgataaaatctatggggtgttctttccttgacagacttcaaacttggaacaccccaaatgattatgaggtcacatgttgaagggtcaatctggacataacaataatatccgctccatatcttgataatcttttgcttgacagacat
gi|3 : gtaatgattttcatatgtaggttggttataagaagaggaatcctatttattttcatgtcaagggtcaatccactctggatataggatgataatgtccgctcaatgtcttaagaacccattgacaaacatcaaactttgtactccgataaaatctatggggtgttCCCAAATGATTAT-GAGGTCA----CATGTTGAAGGGTCAA-T-C-----------T--GGACATA--A--C--AA----TAATATCC-GCTCCAT-ATC-T-TGAT-AAT-CTTT-TGCTTG-A-C-AGA-CA----T
gi|4 : gtaatgattttcatatgtaggttggttataagaagaggaatcctatttattttcatgtcaagggtcaatccactctggatataggatgataatgtccgctcaatgtcttaagaacccattgacaaacatcaaactttgtactccgataaaatctatggggtgttctttccttgacagacttcaaacttggaacacGATATA--C--C--AG----TGTTGT---ACT--GTGATC-T-TAAG-AAC-GCTT-TGCTTG-C-C-AGA-CA----TTAAA-CTTGTT-CTACT----GGCTTCTCTTTTCATAAGAAAAAG--TAGA-TGATTCCTTT-----GG-------TTTTGAGGTGGCAC-AAAGGTTAAAGGTCAAAGGGTCAA--TCTACTCTGA--ACATAGAAAGATATTGTGCGCTCA--ATATTCTTGAGAAACTGTCTTCTTGA-CA
gi|5 : gggggcatatatgtttgcacctgtcagccATT-T-GAGGTCA----GAAGGTCAAGGGTTAATT-C----ATTC---C--GGACATAAGG--T--GA----TTCTGTTC-ACTCAttaaactt
gi|6 : cccttagaagaggcgtatggtgcttagcttctccaaattgatcggcaaaacactcaatatcttgggtaccattcacttactcgtaatgctatttcatatgttggtagaagaggacccctAGGGTCAA-T-T----A--TCTGT--GGTCATA--G--GTAGA----TAGTGGTC-ATTCAGT-ATG-T-TGAG-AAC-CCTT-T-CCTA-A-CAAAA-CAAAATTCTAA-CTTGGT-GCAC
gi|7 : atattgatatttcatatgtgtaagatataaaaagatgatgcctaattattacattattgGTCGG-T-T----A--G---T--AGGCATA--G--T--G-------TTTTAC--CTCAGT-ATC-T-TAAG-AAC-TCTT-TGCTCG-A-C-AGA-CA----TCAGA-CTTGGT-ATACT----GG-acaatcta
gi|8 : tattttatacccctctttaaaatgggtgaggaatattaattagtttgcatgtgtcc-GAGGTCATAATCAAACGCAAGGGTTAA--------A--C---T--AGACATA--G--CATGA----CATCGTCT-GCTTA-T-ATC-TGTTAGCAAT-ACCT-TG---A-A-C-AGA-CG----TCAAACC-TGAT-ACACC-----G-TTCT-------------------TAGA-TAA-----CCCTATTAA-------TTTTGAG--ggg
gi|9 : TT-T-GAGATAA----CAAGGTCT-GGGTCAG-T-CTTCTC--C---T--GGACATA--G-----GA----TATTGTCCCGCTCATT-ATCCT-TGAT-AATTCCTT-TGCTTG-G-C-AGACCA----TCAAAC----GTAACACT----GG-TTC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TCAGTGTCTCGGGAACCATTCACTTCGTTGTATTATGAATGTTATGAGTGGAAGAGGATTCCTGGTGATTTTCAGGTCAAAAGGTGATGGGT
Unaligned ( gi|17 ): CTCTTGAAAAAATGCATATTGGTTGCGCTTGTTGATTGTATATGAAGTGTTGTTCACTCAATATCTTACTT
Unaligned ( gi|21 ): ACATTTGGTTTGTGCTTGTTGGTCAATGGACCAAATGTTGACCACTCAAAATCTGAACAAC
Alignments
lowQualScore : 1 444444444444444 22222222 11 666666666666666666666666666666666666666666666666 99999999999999999999999999999999999999999999999999999999999 11 1 1 222222 2 1 4444444444 4444444444444 11 11 1 1 11 1 1 3333333 444444444444 222 1 444444444444 1 1 11 1 1 1 1 222 11 1 1 1 1 1 1 11 1 1
lowQualScore : 0 3 5 8888 000000000000000 44 99999999 5555 2 5 2 2 2 2 3 1 3 1 3 3 4 8888 22 3 3 9999 4 666666666666666666666666666666666666666666666666 77 1 6 33333333333333333333333333333333333333333333333333333333333 77 1 9 6 6 0 444444 6 6 2 22 1 1111111111 1 1 2 1 9999999999999 1 1 88 88 5 1 5 1 77 1 5 1 1 1 1 5 1 1 2222222 1 1 666666666666 1 111 5 666666666666 22 5 5 66 5 5 5 5 222 88 5 1 5 1 5 5 1 1 1 5 5 1 88 5 5 1 22 1
lowQualScore : . . . .... ............... .. ........ .... . . . . . . . . . . . . . .... .. . . .... . ................................................ .. . . ........................................................... .. . . . . . ...... . . . .. . .......... . . . . ............. . . .. .. . . . . .. . . . . . . . . . ....... . . ............ . ... . ............ .. . . .. . . . . ... .. . . . . . . . . . . . . .. . . . .. .
lowQualScore : 2 3 7 5555 000000000000000 22 88888888 3333 4 9 7 7 7 9 1 7 1 8 6 6 0 5555 33 6 6 4444 4 777777777777777777777777777777777777777777777777 99 0 7 77777777777777777777777777777777777777777777777777777777777 22 7 2 7 7 0 222222 7 7 0 00 0 5555555555 0 0 5 0 5555555555555 0 0 55 55 5 0 5 0 55 0 0 0 0 0 0 5 0 0 5555555 0 0 555555555555 0 555 0 555555555555 00 5 0 55 5 5 0 5 000 55 5 0 5 0 0 5 0 0 0 5 5 0 00 5 5 0 00 0
consensus : CCCTATTGATT-T-GAGGTCA----CAAGGTCAAGGGTCAA-T-C----A--C---T--GGACATA--G--C--GA----TATTGTCC-GCTCAGT-ATC-T-TGAG-AAC-CCTT-TGCTTG-AC-AGA-CA----TCAAACCTTGGT-ACACT----GG-TTCTA----CCTAAG-----G--TAGA-TGA-----TC-----GA-------TTTTGAG--GNCAC-A-----------------GGTCAN--CCTTCTCTGG--ACA-GGA-----A----T--TGTCCGCTCAGCATATT-TTGAGAACCT-TCTGCTTGA-CAGACATCAAA-GTTG--T-CACTGG-ACGCCCGAAAGAGTAGATAGCGACANNAANTTTTGTGAAAATATCTTTATACAAATGGAAATNANTTTTATCAGAGTGCTAATTTATATCAGACGTATTTTCATTTTCATGATTACCGGCAAGCAAATCTTTATNATCCCATTATCATTCATGAATAGTTTAAACATGTACTATAGTCTAATNAGCCACTNGACTCGAGATAAACGCAGCAAAGACATAAAGTTTATGANGATGAGNACCANCGCGCAACAACANCCAAGGTATNACAGCAAAAGGTCAGGAAATGGAAGAAGTGTCTAGCTATNTGTACCTAGGTGGAATNGTAAAAACAACAGGAGGAACAAANGAAGACATCCGGAGAAGACTAGNCCTAGCAAGATCTGCATCTTCTAGCGATAAAGATACATGTAGTTNATNTGATCTGCCATATAAATGATATCCTGAGAAGTAAAGGATTGGTGGANGAGAGTCAACACAGTTGTACATTATCAACATAACTAAAACCATAACCAAAACTGGATCAATATATTGCGTAAAAGCATTTAATATACAACCTGCCTGCACAGCAATTNNATGAATAAATGTTAAAACAAGTGGCCGTAGCCAATATATNCATGTAAAATAAACAGATCTAAAAACATACAAATGTATAAAAAGGTGAAGATTCCATAACTCCAACAAACATGTATATCGTTATATAACCAGATTCATTATTAAGTGTANAATGGTTAGTANACCTATCTTGTATTAANTNTTNTGACATCAATTATAATAACCGAAGTATATNTCATCTGTGACACAAAAGACATAACATGCAAATGACAACAGTGTTTTATGTTCATTAAAATATCACGACACAGCACGATNTTTGCCTGTATAAGACGACGAGGATTATAATCTTNNAAACAANAACGAA
Reference ( family-502 ) : CCCTATTGATT-T-GAGGTCA----CAAGGTCAAGGGTCAA-T-C----A--C---T--GGACATA--G--C--GA----TATTGTCC-GCTCAGT-ATC-T-TGAG-AAC-CCTT-TGCTTG-AC-AGA-CA----TCAAACCTTGGT-ACACT----GG-TTCTA----CCTAAG-----G--TAGA-TGA-----TC-----GA-------TTTTGAG--GNCAC-A-----------------GGTCAN--CCTTCTCTGG--ACA-GGA-----A----T--CGTCCGCTCAGCATATTGTTGAGAACCT-TCTGCTTGA-CAGACATCAAA-GTTG--T-CACTGG-ACGCCCGAAAGAGTAGATAGCGACANNAANTTTTGTGAAAATATCTTTATACAAATGGAAATNANTTTTATCAGAGTGCTAATTTATATCAGACGTATTTTCATTTTCATGATTACCGGCAAGCAAATCTTTATNATCCCATTATCATTCATGAATAGTTTAAACATGTACTATAGTCTAATNAGCCACTNGACTCGAGATAAACGCAGCAAAGACATAAAGTTTATGANGATGAGNACCANCGCGCAACAACANCCAAGGTATNACAGCAAAAGGTCAGGAAATGGAAGAAGTGTCTAGCTATNTGTACCTAGGTGGAATNGTAAAAACAACAGGAGGAACAAANGAAGACATCCGGAGAAGACTAGNCCTAGCAAGATCTGCATCTTCTAGCGATAAAGATACATGTAGTTNATNTGATCTGCCATATAAATGATATCCTGAGAAGTAAAGGATTGGTGGANGAGAGTCAACACAGTTGTACATTATCAACATAACTAAAACCATAACCAAAACTGGATCAATATATTGCGTAAAAGCATTTAATATACAACCTGCCTGCACAGCAATTNNATGAATAAATGTTAAAACAAGTGGCCGTAGCCAATATATNCATGTAAAATAAACAGATCTAAAAACATACAAATGTATAAAAAGGTGAAGATTCCATAACTCCAACAAACATGTATATCGTTATATAACCAGATTCATTATTAAGTGTANAATGGTTAGTANACCTATCTTGTATTAANTNTTNTGACATCAATTATAATAACCGAAGTATATNTCATCTGTGACACAAAAGACATAACATGCAAATGACAACAGTGTTTTATGTTCATTAAAATATCACGACACAGCACGATNTTTGCCTGTATAAGACGACGAGGATTATAATCTTNNAAACAANAACGAA
gi|1 : CCCTATTGATCGT-GAGATCA----CAAGGTCAAGGGTCAA--------A--C---T--GAACATG--G--T--AA----CATTGTAT-GCTTAGT-ATC-T-GGAG-AAC-CAAT-TG-TTGCAC-AGA-C-----TTAAATCCTGGT-ATACT----GG-TTCTA----TCTAGGC----G--TAGA-TGA-----TC-----TA-------TTTTGAG--GCCACCA-----------------GGTTAT--CCTTCTCTGG-------------------------CTATACAAGATATTGTTGACAACTC-TCTATTTGA-CAGATACCAAA-GT------CA--GG-ACGCCCGGAAGAGTAGATAGCGACAAAAACTTTTGTGAAAATATCTTTATACAAATGAAAATAATTTTTATCAGAGTGCTAATTTATATCAGAAATATTTTCATTTTCATGATTACCGGTAAGCAAATCTTTATAATCCCATTATCATTCATGAATAATTTAAACATGTACTATAGTCTAATAAGCCACTTGACTCGAGATAAACACAGCAAAGACATAAAGTTTATGATG-TGAGAA--ATTGTG-AACAACACTCAAGGTATCACAACAAAAGATCAGGAAATGGAAGAAGTGTCTAGTTATGTGTACTTAGGTGGAATTGTAAAAACAACAGGAAGAACAAAAGAAGATATCCGGAGAAGACTAGGCCTAGCAAGATCTGCATCTTCTAGTGATAAAG---C---TAGTTAATGTGATCTGCCATATAAATGATATC------------GGATTGGTGGATGAGAGTCAACATAGTTGTACATTATCAACATAACTAAAACCATAACCAAAACTGGATCAATATATTGCGTAAAAGCATTTAATATATAACCTACCTGCACAGCAATTATATGAATAAATGTTAAAACAAGTGG-CGTAGCCAATATATTCATGTAAAATAAACAGATCTAAAAACATACAAATGTATAAAAAGGTGAAGATTCCATAACTCCAACAAACATGTATATCGT--TATAACCAGATTCATTATTAAGTGTACAATGGTTAG-AGACCTATC-TGTATTAATTGTTATGACATCAATTAT-ATAACCG-AGTATATTTCATCTGTGACACAAAAGACATAACATGCAAATGACAACAGTGTTTTATG-TCATTAAAATATCACGACACAGCACGATTTTTGCCTGTATAAGACGACGAGGATTATAATCTTAAAAACAAAAACGAA
gi|10 : ----TGTTGTTC-ACTCAGT-ATC-T-TAAG-AAC-ACTTGTGTTT
gi|11 : gcatattagtttgcacctgttggtcagaagaccaatA-----TT-----GA-------TTTTGAG--GGCAC-A-----------------G-TCAA--GCTT-TCTAG--ACA-G-----------------TCCATTCAGTATGTTGT---GAACCT-TTTGCATGA-CAGACATCAAATTTTG--TACACTGGAATGTTCAAAAGAGCAGAcatggcaatacaaatgttttagacattgtatttctctattca
gi|12 : tTTGTCA-ACTCACT-ATC-T-TGAG-AAC-ACTC-TACTTG-AC-AGA-TA----TCAAACTTT-GT-AAACT----GA-TT
gi|13 : tatctatttttaaatcacaaggtgagcaagaatCCTTATTAATT-TTAAGGTCA----CAAGGTCAAG-----------------T---T--GGACATA--G--TAAAA----TATTATCT-GCTCAAT-AT--T-TGAG-AAC-Caccccaagag
gi|15 : ctgacttctcagaagcagtaatgacc-----------------GGTCATATCCTT-TCCGTT-ACA-GGA-----AAATAT--CGTTCACTCAG--TATC-TTGAGAACCT-TTTGCTTGAGCAGACATCAAA-GTTG--T-ggt
gi|16 : aagGGTCAG-T-T----G--C---T--AG---TG--G--A--AA----TGTTGATT-GCTTAGT-ACC-T-TAAG-AAC-CC-T-TGCTTG-AC-AGa
gi|18 : tattggtttctgcctgttGGTCA-----AAGGTCAAGGTTCAGTT-C----AATC---T--GAACATA-----T--GAAGATTATTGTCT-GCTCA---ATC-T-TGAA-AAcaa
gi|19 : tatag----TGTTGTCT-GCTAAAT-ATC-T-TGAG-AAC-CCTT-
gi|2 : cataatttggtttgcacaagtcaattgaaagaccaagAACGTTCGC-AGACTTAAAGG-TTCTA----TCTAAG-----GAGTAGA-TGAC----TC-----GACTATCTATTTTGAG--GCCAC-AA----------------GGTCAT--CCTACTCTGGTTATA-AGAT----A----T--TGTCCGATCAACAT--T-TTGAGAACTT-TCTATTTCA-CAGACATCAAA-GTTAGTT-CACTGGTACCCCC-AAAGAGTAGATAGCGACATTAAGTTTTGTGAAAATATCTT----------GAAATCAGTTTTATCAGAGTGCTAATTTATATCAGACGTATTTTCATTTTCATAATTACCGGCAAGCAAATCTTTATTATCCCATTATCATTCATGAATAGTTTAAA-------------CTAATTAGCCACTGAACTCAAGATAAACGCAGC--AGAC--AAAG-TTATGAGGATGAACACCAACACGCAACAACAACCAAGGTATAACAGTAAAAGGTCAGGAAATGGAAGAAGTGTCTAGCTATTTGTACCTAGGTGGAATGGT-AAAACAACAGGAGGAACAAATGAAGACATCCAGAGAAGACTAGCCCTAGCAAGATCTGCATCTTTTAGCGATAAAGATACATGTAGTTTATCTGATCTGCCATATAAATGATATCCTGAGAAGTAAAGGATTGGTGGAGGAGAGTCAACACAGTTGTAC---ATCAACATAACTAAAATCATAA-CAAAA------------ATTGCGTAAAAGCATTTAATATACAACCTGTCTGCACAGCAATTTGATGAATAAATGTTAAAAC-AGTAGCCGTAGCCAATATA-ACATGT-AAATAAACAGATCTAAAAACATACAAATGT-TAAAAAAGTGAAGATT-CATAACTCCAAC-AACATG-A-ATCGTTATATAACCAGATTCATT-TTAAGTGTAAAATGGTTAGTATA-CTATCTTGTATTAAATTTTTTGACATCAATTATAATAACCGAAATATATATCATCTGTGACACAAAAG--ATAACATGCAAATGAC-ACAGTGTTTTATGTTCATTAAAATATCACGACACAGCACGATATTTGCCTGTATAAAACAACGAAGATTATAATCTTTTAAACAATAACGAA
gi|20 : atctggagGTC-----CAAGGTCATGAGTCAG-TCC----ACTC---T--GGACATA--G--CAAGA----TATTGTCC-ACAC----ATC-T-Tcgtcattttc
gi|22 : tcacataAGGTCA----CAAGATCGAAGGTCAA-TCC----ACTC---T--TTACATA--GGAA--GA----TACTGTCC-ACTCA
gi|23 : AATTTTGGT-ACACT----GG-TTCTA----CCTAAGAC---G--TAGGTTGA-----T------GA-------TTTCGAG--GTCAC-A-----------------GGt
gi|3 : CCTATTTATT-T-----TCA----T---GTCAAGGGTCAA-T-CC---A--C---TCTGGATATA--GGAT--GA----TAATGTCC-GCTCAAT-GTC-T-TAAG-AAC-CC-----ATTG-AC-AAA-CA----TCAAACTTT-GT-AC
gi|3 : gtaatgattttcatatgtaggttggttataagaagaggaatCTT-TCCTTG-AC-AGA-CT----TCAAAC-TTGGA-ACAC-----------------CCCAA----------------A-----T------GA-------TTATGAG--GTCAC-ATGTTGAAG---------GGTCAA-------TCTGG--ACA-TAACA---A----TAATATCCGCTC--CATATC-TTGATAATCT-TTTGCTTGA-CAGACATtccgataaaatctatggggtgttctttccttgacagacttcaaacttggaacaccccaaatgattatgaggtcacatgttgaagggtcaatctggacataacaataatatccgctccatatcttgataatcttttgcttgacagacat
gi|3 : gtaatgattttcatatgtaggttggttataagaagaggaatcctatttattttcatgtcaagggtcaatccactctggatataggatgataatgtccgctcaatgtcttaagaacccattgacaaacatcaaactttgtactccgataaaatctatggggtgttCCCAAATGATTAT-GAGGTCA----CATGTTGAAGGGTCAA-T-C-----------T--GGACATA--A--C--AA----TAATATCC-GCTCCAT-ATC-T-TGAT-AAT-CTTT-TGCTTG-AC-AGA-CA----T
gi|4 : gtaatgattttcatatgtaggttggttataagaagaggaatcctatttattttcatgtcaagggtcaatccactctggatataggatgataatgtccgctcaatgtcttaagaacccattgacaaacatcaaactttgtactccgataaaatctatggggtgttctttccttgacagacttcaaacttggaacacGATATA--C--C--AG----TGTTGT---ACT--GTGATC-T-TAAG-AAC-GCTT-TGCTTG-CC-AGA-CA----TTAAA-CTTGTT-CTACT----GGCTTCTCTTTTCATAAGAAAAAG--TAGA-TGATTCCTTT-----GG-------TTTTGAGGTGGCAC-AAAGGTTAAAGGTCAAAGGGTCAA--TCTACTCTGA--ACATAGAAAGATA----T--TGTGCGCTCA--ATATTCTTGAGAAACTGTCTTCTTGA-CA
gi|5 : gggggcatatatgtttgcacctgtcagccATT-T-GAGGTCA----GAAGGTCAAGGGTTAATT-C----ATTC---C--GGACATAAGG--T--GA----TTCTGTTC-ACTCAttaaactt
gi|6 : cccttagaagaggcgtatggtgcttagcttctccaaattgatcggcaaaacactcaatatcttgggtaccattcacttactcgtaatgctatttcatatgttggtagaagaggacccctAGGGTCAA-T-T----A--TCTGT--GGTCATA--G--GTAGA----TAGTGGTC-ATTCAGT-ATG-T-TGAG-AAC-CCTT-T-CCTA-ACAAAA-CAAAATTCTAA-CTTGGT-GCAC
gi|7 : atattgatatttcatatgtgtaagatataaaaagatgatgcctaattattacattattgGTCGG-T-T----A--G---T--AGGCATA--G--T--G-------TTTTAC--CTCAGT-ATC-T-TAAG-AAC-TCTT-TGCTCG-AC-AGA-CA----TCAGA-CTTGGT-ATACT----GG-acaatcta
gi|8 : tattttatacccctctttaaaatgggtgaggaatattaattagtttgcatgtgtcc-GAGGTCATAATCAAACGCAAGGGTTAA--------A--C---T--AGACATA--G--CATGA----CATCGTCT-GCTTA-T-ATC-TGTTAGCAAT-ACCT-TG---A-AC-AGA-CG----TCAAACC-TGAT-ACACC-----G-TTCT-------------------TAGA-TAA-----CCCTATTAA-------TTTTGAG--ggg
gi|9 : TT-T-GAGATAA----CAAGGTCT-GGGTCAG-T-CTTCTC--C---T--GGACATA--G-----GA----TATTGTCCCGCTCATT-ATCCT-TGAT-AATTCCTT-TGCTTG-GC-AGACCA----TCAAAC----GTAACACT----GG-TTC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TCAGTGTCTCGGGAACCATTCACTTCGTTGTATTATGAATGTTATGAGTGGAAGAGGATTCCTGGTGATTTTCAGGTCAAAAGGTGATGGGT
Unaligned ( gi|17 ): CTCTTGAAAAAATGCATATTGGTTGCGCTTGTTGATTGTATATGAAGTGTTGTTCACTCAATATCTTACTT
Unaligned ( gi|21 ): ACATTTGGTTTGTGCTTGTTGGTCAATGGACCAAATGTTGACCACTCAAAATCTGAACAAC
Alignments
lowQualScore : 1 444444444444444 22222222 11 666666666666666666666666666666666666666666666666 88888888888888888888888888888888888888888888888888888888888 22 1 1 222222 2 1 4444444444 4444444444444 11 11 1 1 11 1 1 3333333 444444444444 222 1 444444444444 1 1 11 1 1 1 1 222 11 1 1 1 1 1 1 11 1 1
lowQualScore : 0 3 5 8888 000000000000000 44 99999999 5555 2 5 2 2 2 2 3 1 3 1 3 3 4 8888 22 3 3 9999 4 666666666666666666666666666666666666666666666666 77 1 6 44444444444444444444444444444444444444444444444444444444444 1 5 44 3 6 6 0 444444 6 6 2 22 1 1111111111 1 1 2 1 9999999999999 1 1 88 88 5 1 5 1 77 1 5 1 1 1 1 5 1 1 2222222 1 1 666666666666 1 111 5 666666666666 22 5 5 66 5 5 5 5 222 88 5 1 5 1 5 5 1 1 1 5 5 1 88 5 5 1 22 1
lowQualScore : . . . .... ............... .. ........ .... . . . . . . . . . . . . . .... .. . . .... . ................................................ .. . . ........................................................... . . .. . . . . ...... . . . .. . .......... . . . . ............. . . .. .. . . . . .. . . . . . . . . . ....... . . ............ . ... . ............ .. . . .. . . . . ... .. . . . . . . . . . . . . .. . . . .. .
lowQualScore : 2 3 7 5555 000000000000000 22 88888888 3333 4 9 7 7 7 9 1 7 1 8 6 6 0 5555 33 6 6 4444 4 111111111111111111111111111111111111111111111111 99 0 7 99999999999999999999999999999999999999999999999999999999999 0 2 33 3 7 7 0 222222 7 7 0 00 0 5555555555 0 0 5 0 5555555555555 0 0 55 55 5 0 5 0 55 0 0 0 0 0 0 5 0 0 5555555 0 0 555555555555 0 555 0 555555555555 00 5 0 55 5 5 0 5 000 55 5 0 5 0 0 5 0 0 0 5 5 0 00 5 5 0 00 0
consensus : CCCTATTGATT-T-GAGGTCA----CAAGGTCAAGGGTCAA-T-C----A--C---T--GGACATA--G--C--GA----TATTGTCC-GCTCAGT-ATC-T-TGAG-AAC-CCTT-TGCTTG-AC-AGA-CA----TCAAACCTTGGT-ACACT----GG-TTCTA----CCTAAG-----G--TAGA-TGA-----TC-----GA-------TTTTGAG--GNCAC-A-----------------GGTCAN--CCTTCTCTGG--AC--A-AGA-----A----T--TGTCCGCTCAG-ATATT-TTGAGAACCT-TCTGCTTGA-CAGACATCAAA-GTTG--T-CACTGG-ACGCCCGAAAGAGTAGATAGCGACANNAANTTTTGTGAAAATATCTTTATACAAATGGAAATNANTTTTATCAGAGTGCTAATTTATATCAGACGTATTTTCATTTTCATGATTACCGGCAAGCAAATCTTTATNATCCCATTATCATTCATGAATAGTTTAAACATGTACTATAGTCTAATNAGCCACTNGACTCGAGATAAACGCAGCAAAGACATAAAGTTTATGANGATGAGNACCANCGCGCAACAACANCCAAGGTATNACAGCAAAAGGTCAGGAAATGGAAGAAGTGTCTAGCTATNTGTACCTAGGTGGAATNGTAAAAACAACAGGAGGAACAAANGAAGACATCCGGAGAAGACTAGNCCTAGCAAGATCTGCATCTTCTAGCGATAAAGATACATGTAGTTNATNTGATCTGCCATATAAATGATATCCTGAGAAGTAAAGGATTGGTGGANGAGAGTCAACACAGTTGTACATTATCAACATAACTAAAACCATAACCAAAACTGGATCAATATATTGCGTAAAAGCATTTAATATACAACCTGCCTGCACAGCAATTNNATGAATAAATGTTAAAACAAGTGGCCGTAGCCAATATATNCATGTAAAATAAACAGATCTAAAAACATACAAATGTATAAAAAGGTGAAGATTCCATAACTCCAACAAACATGTATATCGTTATATAACCAGATTCATTATTAAGTGTANAATGGTTAGTANACCTATCTTGTATTAANTNTTNTGACATCAATTATAATAACCGAAGTATATNTCATCTGTGACACAAAAGACATAACATGCAAATGACAACAGTGTTTTATGTTCATTAAAATATCACGACACAGCACGATNTTTGCCTGTATAAGACGACGAGGATTATAATCTTNNAAACAANAACGAA
Reference ( family-502 ) : CCCTATTGATT-T-GAGGTCA----CAAGGTCAAGGGTCAA-T-C----A--C---T--GGACATA--G--C--GA----TATTGTCC-GCTCAGT-ATC-T-TGAG-AAC-CCTT-TGCTTG-AC-AGA-CA----TCAAACCTTGGT-ACACT----GG-TTCTA----CCTAAG-----G--TAGA-TGA-----TC-----GA-------TTTTGAG--GNCAC-A-----------------GGTCAN--CCTTCTCTGG--AC--A-GGA-----A----T--TGTCCGCTCAGCATATT-TTGAGAACCT-TCTGCTTGA-CAGACATCAAA-GTTG--T-CACTGG-ACGCCCGAAAGAGTAGATAGCGACANNAANTTTTGTGAAAATATCTTTATACAAATGGAAATNANTTTTATCAGAGTGCTAATTTATATCAGACGTATTTTCATTTTCATGATTACCGGCAAGCAAATCTTTATNATCCCATTATCATTCATGAATAGTTTAAACATGTACTATAGTCTAATNAGCCACTNGACTCGAGATAAACGCAGCAAAGACATAAAGTTTATGANGATGAGNACCANCGCGCAACAACANCCAAGGTATNACAGCAAAAGGTCAGGAAATGGAAGAAGTGTCTAGCTATNTGTACCTAGGTGGAATNGTAAAAACAACAGGAGGAACAAANGAAGACATCCGGAGAAGACTAGNCCTAGCAAGATCTGCATCTTCTAGCGATAAAGATACATGTAGTTNATNTGATCTGCCATATAAATGATATCCTGAGAAGTAAAGGATTGGTGGANGAGAGTCAACACAGTTGTACATTATCAACATAACTAAAACCATAACCAAAACTGGATCAATATATTGCGTAAAAGCATTTAATATACAACCTGCCTGCACAGCAATTNNATGAATAAATGTTAAAACAAGTGGCCGTAGCCAATATATNCATGTAAAATAAACAGATCTAAAAACATACAAATGTATAAAAAGGTGAAGATTCCATAACTCCAACAAACATGTATATCGTTATATAACCAGATTCATTATTAAGTGTANAATGGTTAGTANACCTATCTTGTATTAANTNTTNTGACATCAATTATAATAACCGAAGTATATNTCATCTGTGACACAAAAGACATAACATGCAAATGACAACAGTGTTTTATGTTCATTAAAATATCACGACACAGCACGATNTTTGCCTGTATAAGACGACGAGGATTATAATCTTNNAAACAANAACGAA
gi|1 : CCCTATTGATCGT-GAGATCA----CAAGGTCAAGGGTCAA--------A--C---T--GAACATG--G--T--AA----CATTGTAT-GCTTAGT-ATC-T-GGAG-AAC-CAAT-TG-TTGCAC-AGA-C-----TTAAATCCTGGT-ATACT----GG-TTCTA----TCTAGGC----G--TAGA-TGA-----TC-----TA-------TTTTGAG--GCCACCA-----------------GGTTAT--CCTTCTCTGG---------------------C--TATACA---AG-ATATTGTTGACAACTC-TCTATTTGA-CAGATACCAAA-GT------CA--GG-ACGCCCGGAAGAGTAGATAGCGACAAAAACTTTTGTGAAAATATCTTTATACAAATGAAAATAATTTTTATCAGAGTGCTAATTTATATCAGAAATATTTTCATTTTCATGATTACCGGTAAGCAAATCTTTATAATCCCATTATCATTCATGAATAATTTAAACATGTACTATAGTCTAATAAGCCACTTGACTCGAGATAAACACAGCAAAGACATAAAGTTTATGATG-TGAGAA--ATTGTG-AACAACACTCAAGGTATCACAACAAAAGATCAGGAAATGGAAGAAGTGTCTAGTTATGTGTACTTAGGTGGAATTGTAAAAACAACAGGAAGAACAAAAGAAGATATCCGGAGAAGACTAGGCCTAGCAAGATCTGCATCTTCTAGTGATAAAG---C---TAGTTAATGTGATCTGCCATATAAATGATATC------------GGATTGGTGGATGAGAGTCAACATAGTTGTACATTATCAACATAACTAAAACCATAACCAAAACTGGATCAATATATTGCGTAAAAGCATTTAATATATAACCTACCTGCACAGCAATTATATGAATAAATGTTAAAACAAGTGG-CGTAGCCAATATATTCATGTAAAATAAACAGATCTAAAAACATACAAATGTATAAAAAGGTGAAGATTCCATAACTCCAACAAACATGTATATCGT--TATAACCAGATTCATTATTAAGTGTACAATGGTTAG-AGACCTATC-TGTATTAATTGTTATGACATCAATTAT-ATAACCG-AGTATATTTCATCTGTGACACAAAAGACATAACATGCAAATGACAACAGTGTTTTATG-TCATTAAAATATCACGACACAGCACGATTTTTGCCTGTATAAGACGACGAGGATTATAATCTTAAAAACAAAAACGAA
gi|10 : ----TGTTGTTC-ACTCAGT-ATC-T-TAAG-AAC-ACTTGTGTTT
gi|11 : gcatattagtttgcacctgttggtcagaagaccaatA-----TT-----GA-------TTTTGAG--GGCAC-A-----------------G-TCAA--GCTT-TCTAG--AC--A-G-----------------TCCATTCAG--TATG-TTGTGAACCT-TTTGCATGA-CAGACATCAAATTTTG--TACACTGGAATGTTCAAAAGAGCAGAcatggcaatacaaatgttttagacattgtatttctctattca
gi|12 : tTTGTCA-ACTCACT-ATC-T-TGAG-AAC-ACTC-TACTTG-AC-AGA-TA----TCAAACTTT-GT-AAACT----GA-TT
gi|13 : tatctatttttaaatcacaaggtgagcaagaatCCTTATTAATT-TTAAGGTCA----CAAGGTCAAG-----------------T---T--GGACATA--G--TAAAA----TATTATCT-GCTCAAT-AT--T-TGAG-AAC-Caccccaagag
gi|15 : ctgacttctcagaagcagtaatgacc-----------------GGTCATATCCTT-TCCGTT-AC--A-GGA-----AAATAT--CGTTCACTCAG--TATC-TTGAGAACCT-TTTGCTTGAGCAGACATCAAA-GTTG--T-ggt
gi|16 : aagGGTCAG-T-T----G--C---T--AG---TG--G--A--AA----TGTTGATT-GCTTAGT-ACC-T-TAAG-AAC-CC-T-TGCTTG-AC-AGa
gi|18 : tattggtttctgcctgttGGTCA-----AAGGTCAAGGTTCAGTT-C----AATC---T--GAACATA-----T--GAAGATTATTGTCT-GCTCA---ATC-T-TGAA-AAcaa
gi|19 : tatag----TGTTGTCT-GCTAAAT-ATC-T-TGAG-AAC-CCTT-
gi|2 : cataatttggtttgcacaagtcaattgaaagaccaagAACGTTCGC-AGACTTAAAGG-TTCTA----TCTAAG-----GAGTAGA-TGAC----TC-----GACTATCTATTTTGAG--GCCAC-AA----------------GGTCAT--CCTACTCTGGTTAT--A-AGAT----A----T--TGTCCGATCAACAT--T-TTGAGAACTT-TCTATTTCA-CAGACATCAAA-GTTAGTT-CACTGGTACCCCC-AAAGAGTAGATAGCGACATTAAGTTTTGTGAAAATATCTT----------GAAATCAGTTTTATCAGAGTGCTAATTTATATCAGACGTATTTTCATTTTCATAATTACCGGCAAGCAAATCTTTATTATCCCATTATCATTCATGAATAGTTTAAA-------------CTAATTAGCCACTGAACTCAAGATAAACGCAGC--AGAC--AAAG-TTATGAGGATGAACACCAACACGCAACAACAACCAAGGTATAACAGTAAAAGGTCAGGAAATGGAAGAAGTGTCTAGCTATTTGTACCTAGGTGGAATGGT-AAAACAACAGGAGGAACAAATGAAGACATCCAGAGAAGACTAGCCCTAGCAAGATCTGCATCTTTTAGCGATAAAGATACATGTAGTTTATCTGATCTGCCATATAAATGATATCCTGAGAAGTAAAGGATTGGTGGAGGAGAGTCAACACAGTTGTAC---ATCAACATAACTAAAATCATAA-CAAAA------------ATTGCGTAAAAGCATTTAATATACAACCTGTCTGCACAGCAATTTGATGAATAAATGTTAAAAC-AGTAGCCGTAGCCAATATA-ACATGT-AAATAAACAGATCTAAAAACATACAAATGT-TAAAAAAGTGAAGATT-CATAACTCCAAC-AACATG-A-ATCGTTATATAACCAGATTCATT-TTAAGTGTAAAATGGTTAGTATA-CTATCTTGTATTAAATTTTTTGACATCAATTATAATAACCGAAATATATATCATCTGTGACACAAAAG--ATAACATGCAAATGAC-ACAGTGTTTTATGTTCATTAAAATATCACGACACAGCACGATATTTGCCTGTATAAAACAACGAAGATTATAATCTTTTAAACAATAACGAA
gi|20 : atctggagGTC-----CAAGGTCATGAGTCAG-TCC----ACTC---T--GGACATA--G--CAAGA----TATTGTCC-ACAC----ATC-T-Tcgtcattttc
gi|22 : tcacataAGGTCA----CAAGATCGAAGGTCAA-TCC----ACTC---T--TTACATA--GGAA--GA----TACTGTCC-ACTCA
gi|23 : AATTTTGGT-ACACT----GG-TTCTA----CCTAAGAC---G--TAGGTTGA-----T------GA-------TTTCGAG--GTCAC-A-----------------GGt
gi|3 : CCTATTTATT-T-----TCA----T---GTCAAGGGTCAA-T-CC---A--C---TCTGGATATA--GGAT--GA----TAATGTCC-GCTCAAT-GTC-T-TAAG-AAC-CC-----ATTG-AC-AAA-CA----TCAAACTTT-GT-AC
gi|3 : gtaatgattttcatatgtaggttggttataagaagaggaatCTT-TCCTTG-AC-AGA-CT----TCAAA-CTTGGA-ACAC-----------------CCCAA------------A-T--------------GA-------TTATGAG--GTCAC-ATGTTGAAG---------GGTCAA-------TCTGG--ACATA-ACA-----A----TAATATCCGCTC--CATATC-TTGATAATCT-TTTGCTTGA-CAGACATtccgataaaatctatggggtgttctttccttgacagacttcaaacttggaacaccccaaatgattatgaggtcacatgttgaagggtcaatctggacataacaataatatccgctccatatcttgataatcttttgcttgacagacat
gi|3 : gtaatgattttcatatgtaggttggttataagaagaggaatcctatttattttcatgtcaagggtcaatccactctggatataggatgataatgtccgctcaatgtcttaagaacccattgacaaacatcaaactttgtactccgataaaatctatggggtgttCCCAAATGATTAT-GAGGTCA----CATGTTGAAGGGTCAA-T-C-----------T--GGACATA--A--C--AA----TAATATCC-GCTCCAT-ATC-T-TGAT-AAT-CTTT-TGCTTG-AC-AGA-CA----T
gi|4 : gtaatgattttcatatgtaggttggttataagaagaggaatcctatttattttcatgtcaagggtcaatccactctggatataggatgataatgtccgctcaatgtcttaagaacccattgacaaacatcaaactttgtactccgataaaatctatggggtgttctttccttgacagacttcaaacttggaacacGATATA--C--C--AG----TGTTGT---ACT--GTGATC-T-TAAG-AAC-GCTT-TGCTTG-CC-AGA-CA----TTAAA-CTTGTT-CTACT----GGCTTCTCTTTTCATAAGAAAAAG--TAGA-TGATTCCTTT-----GG-------TTTTGAGGTGGCAC-AAAGGTTAAAGGTCAAAGGGTCAA--TCTACTCTGA--AC--ATAGAAAGATA----T--TGTGCGCTCA--ATATTCTTGAGAAACTGTCTTCTTGA-CA
gi|5 : gggggcatatatgtttgcacctgtcagccATT-T-GAGGTCA----GAAGGTCAAGGGTTAATT-C----ATTC---C--GGACATAAGG--T--GA----TTCTGTTC-ACTCAttaaactt
gi|6 : cccttagaagaggcgtatggtgcttagcttctccaaattgatcggcaaaacactcaatatcttgggtaccattcacttactcgtaatgctatttcatatgttggtagaagaggacccctAGGGTCAA-T-T----A--TCTGT--GGTCATA--G--GTAGA----TAGTGGTC-ATTCAGT-ATG-T-TGAG-AAC-CCTT-T-CCTA-ACAAAA-CAAAATTCTAA-CTTGGT-GCAC
gi|7 : atattgatatttcatatgtgtaagatataaaaagatgatgcctaattattacattattgGTCGG-T-T----A--G---T--AGGCATA--G--T--G-------TTTTAC--CTCAGT-ATC-T-TAAG-AAC-TCTT-TGCTCG-AC-AGA-CA----TCAGA-CTTGGT-ATACT----GG-acaatcta
gi|8 : tattttatacccctctttaaaatgggtgaggaatattaattagtttgcatgtgtcc-GAGGTCATAATCAAACGCAAGGGTTAA--------A--C---T--AGACATA--G--CATGA----CATCGTCT-GCTTA-T-ATC-TGTTAGCAAT-ACCT-TG---A-AC-AGA-CG----TCAAACC-TGAT-ACACC-----G-TTCT-------------------TAGA-TAA-----CCCTATTAA-------TTTTGAG--ggg
gi|9 : TT-T-GAGATAA----CAAGGTCT-GGGTCAG-T-CTTCTC--C---T--GGACATA--G-----GA----TATTGTCCCGCTCATT-ATCCT-TGAT-AATTCCTT-TGCTTG-GC-AGACCA----TCAAAC----GTAACACT----GG-TTC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TCAGTGTCTCGGGAACCATTCACTTCGTTGTATTATGAATGTTATGAGTGGAAGAGGATTCCTGGTGATTTTCAGGTCAAAAGGTGATGGGT
Unaligned ( gi|17 ): CTCTTGAAAAAATGCATATTGGTTGCGCTTGTTGATTGTATATGAAGTGTTGTTCACTCAATATCTTACTT
Unaligned ( gi|21 ): ACATTTGGTTTGTGCTTGTTGGTCAATGGACCAAATGTTGACCACTCAAAATCTGAACAAC
Alignments
lowQualScore : 1 444444444444444 22222222 11 666666666666666666666666666666666666666666666666 88888888888888888888888888888888888888888888888888888888888 11 1 1 222222 2 1 4444444444 4444444444444 11 11 1 1 11 1 1 3333333 444444444444 222 1 444444444444 1 1 11 1 1 1 1 222 11 1 1 1 1 1 1 11 1 1
lowQualScore : 0 3 5 8888 000000000000000 44 99999999 5555 2 5 2 2 2 2 3 1 3 1 3 3 4 8888 22 3 3 9999 4 666666666666666666666666666666666666666666666666 77 1 6 44444444444444444444444444444444444444444444444444444444444 1 5 88 3 6 6 0 444444 6 6 2 22 1 1111111111 1 1 2 1 9999999999999 1 1 88 88 5 1 5 1 77 1 5 1 1 1 1 5 1 1 2222222 1 1 666666666666 1 111 5 666666666666 22 5 5 66 5 5 5 5 222 88 5 1 5 1 5 5 1 1 1 5 5 1 88 5 5 1 22 1
lowQualScore : . . . .... ............... .. ........ .... . . . . . . . . . . . . . .... .. . . .... . ................................................ .. . . ........................................................... . . .. . . . . ...... . . . .. . .......... . . . . ............. . . .. .. . . . . .. . . . . . . . . . ....... . . ............ . ... . ............ .. . . .. . . . . ... .. . . . . . . . . . . . . .. . . . .. .
lowQualScore : 2 3 7 5555 000000000000000 22 88888888 3333 4 9 7 7 7 9 1 7 1 8 6 6 0 5555 33 6 6 4444 4 111111111111111111111111111111111111111111111111 99 0 7 22222222222222222222222222222222222222222222222222222222222 0 2 22 3 7 7 0 222222 7 7 0 00 0 5555555555 0 0 5 0 5555555555555 0 0 55 55 5 0 5 0 55 0 0 0 0 0 0 5 0 0 5555555 0 0 555555555555 0 555 0 555555555555 00 5 0 55 5 5 0 5 000 55 5 0 5 0 0 5 0 0 0 5 5 0 00 5 5 0 00 0
consensus : CCCTATTGATT-T-GAGGTCA----CAAGGTCAAGGGTCAA-T-C----A--C---T--GGACATA--G--C--GA----TATTGTCC-GCTCAGT-ATC-T-TGAG-AAC-CCTT-TGCTTG-AC-AGA-CA----TCAAACCTTGGT-ACACT----GG-TTCTA----CCTAAG-----G--TAGA-TGA-----TC-----GA-------TTTTGAG--GNCAC-A-----------------GGTCAN--CCTTCTCTGG--AC--A-AGA-----A----T--TGTCCGCTCAGATATT-TTGAGAACCT-TCTGCTTGA-CAGACATCAAA-GTTG--T-CACTGG-ACGCCCGAAAGAGTAGATAGCGACANNAANTTTTGTGAAAATATCTTTATACAAATGGAAATNANTTTTATCAGAGTGCTAATTTATATCAGACGTATTTTCATTTTCATGATTACCGGCAAGCAAATCTTTATNATCCCATTATCATTCATGAATAGTTTAAACATGTACTATAGTCTAATNAGCCACTNGACTCGAGATAAACGCAGCAAAGACATAAAGTTTATGANGATGAGNACCANCGCGCAACAACANCCAAGGTATNACAGCAAAAGGTCAGGAAATGGAAGAAGTGTCTAGCTATNTGTACCTAGGTGGAATNGTAAAAACAACAGGAGGAACAAANGAAGACATCCGGAGAAGACTAGNCCTAGCAAGATCTGCATCTTCTAGCGATAAAGATACATGTAGTTNATNTGATCTGCCATATAAATGATATCCTGAGAAGTAAAGGATTGGTGGANGAGAGTCAACACAGTTGTACATTATCAACATAACTAAAACCATAACCAAAACTGGATCAATATATTGCGTAAAAGCATTTAATATACAACCTGCCTGCACAGCAATTNNATGAATAAATGTTAAAACAAGTGGCCGTAGCCAATATATNCATGTAAAATAAACAGATCTAAAAACATACAAATGTATAAAAAGGTGAAGATTCCATAACTCCAACAAACATGTATATCGTTATATAACCAGATTCATTATTAAGTGTANAATGGTTAGTANACCTATCTTGTATTAANTNTTNTGACATCAATTATAATAACCGAAGTATATNTCATCTGTGACACAAAAGACATAACATGCAAATGACAACAGTGTTTTATGTTCATTAAAATATCACGACACAGCACGATNTTTGCCTGTATAAGACGACGAGGATTATAATCTTNNAAACAANAACGAA
Reference ( family-502 ) : CCCTATTGATT-T-GAGGTCA----CAAGGTCAAGGGTCAA-T-C----A--C---T--GGACATA--G--C--GA----TATTGTCC-GCTCAGT-ATC-T-TGAG-AAC-CCTT-TGCTTG-AC-AGA-CA----TCAAACCTTGGT-ACACT----GG-TTCTA----CCTAAG-----G--TAGA-TGA-----TC-----GA-------TTTTGAG--GNCAC-A-----------------GGTCAN--CCTTCTCTGG--AC--A-AGA-----A----T--TGTCCGCTCAGATATT-TTGAGAACCT-TCTGCTTGA-CAGACATCAAA-GTTG--T-CACTGG-ACGCCCGAAAGAGTAGATAGCGACANNAANTTTTGTGAAAATATCTTTATACAAATGGAAATNANTTTTATCAGAGTGCTAATTTATATCAGACGTATTTTCATTTTCATGATTACCGGCAAGCAAATCTTTATNATCCCATTATCATTCATGAATAGTTTAAACATGTACTATAGTCTAATNAGCCACTNGACTCGAGATAAACGCAGCAAAGACATAAAGTTTATGANGATGAGNACCANCGCGCAACAACANCCAAGGTATNACAGCAAAAGGTCAGGAAATGGAAGAAGTGTCTAGCTATNTGTACCTAGGTGGAATNGTAAAAACAACAGGAGGAACAAANGAAGACATCCGGAGAAGACTAGNCCTAGCAAGATCTGCATCTTCTAGCGATAAAGATACATGTAGTTNATNTGATCTGCCATATAAATGATATCCTGAGAAGTAAAGGATTGGTGGANGAGAGTCAACACAGTTGTACATTATCAACATAACTAAAACCATAACCAAAACTGGATCAATATATTGCGTAAAAGCATTTAATATACAACCTGCCTGCACAGCAATTNNATGAATAAATGTTAAAACAAGTGGCCGTAGCCAATATATNCATGTAAAATAAACAGATCTAAAAACATACAAATGTATAAAAAGGTGAAGATTCCATAACTCCAACAAACATGTATATCGTTATATAACCAGATTCATTATTAAGTGTANAATGGTTAGTANACCTATCTTGTATTAANTNTTNTGACATCAATTATAATAACCGAAGTATATNTCATCTGTGACACAAAAGACATAACATGCAAATGACAACAGTGTTTTATGTTCATTAAAATATCACGACACAGCACGATNTTTGCCTGTATAAGACGACGAGGATTATAATCTTNNAAACAANAACGAA
gi|1 : CCCTATTGATCGT-GAGATCA----CAAGGTCAAGGGTCAA--------A--C---T--GAACATG--G--T--AA----CATTGTAT-GCTTAGT-ATC-T-GGAG-AAC-CAAT-TG-TTGCAC-AGA-C-----TTAAATCCTGGT-ATACT----GG-TTCTA----TCTAGGC----G--TAGA-TGA-----TC-----TA-------TTTTGAG--GCCACCA-----------------GGTTAT--CCTTCTCTGG---------------------C--TATACA---AGATATTGTTGACAACTC-TCTATTTGA-CAGATACCAAA-GT------CA--GG-ACGCCCGGAAGAGTAGATAGCGACAAAAACTTTTGTGAAAATATCTTTATACAAATGAAAATAATTTTTATCAGAGTGCTAATTTATATCAGAAATATTTTCATTTTCATGATTACCGGTAAGCAAATCTTTATAATCCCATTATCATTCATGAATAATTTAAACATGTACTATAGTCTAATAAGCCACTTGACTCGAGATAAACACAGCAAAGACATAAAGTTTATGATG-TGAGAA--ATTGTG-AACAACACTCAAGGTATCACAACAAAAGATCAGGAAATGGAAGAAGTGTCTAGTTATGTGTACTTAGGTGGAATTGTAAAAACAACAGGAAGAACAAAAGAAGATATCCGGAGAAGACTAGGCCTAGCAAGATCTGCATCTTCTAGTGATAAAG---C---TAGTTAATGTGATCTGCCATATAAATGATATC------------GGATTGGTGGATGAGAGTCAACATAGTTGTACATTATCAACATAACTAAAACCATAACCAAAACTGGATCAATATATTGCGTAAAAGCATTTAATATATAACCTACCTGCACAGCAATTATATGAATAAATGTTAAAACAAGTGG-CGTAGCCAATATATTCATGTAAAATAAACAGATCTAAAAACATACAAATGTATAAAAAGGTGAAGATTCCATAACTCCAACAAACATGTATATCGT--TATAACCAGATTCATTATTAAGTGTACAATGGTTAG-AGACCTATC-TGTATTAATTGTTATGACATCAATTAT-ATAACCG-AGTATATTTCATCTGTGACACAAAAGACATAACATGCAAATGACAACAGTGTTTTATG-TCATTAAAATATCACGACACAGCACGATTTTTGCCTGTATAAGACGACGAGGATTATAATCTTAAAAACAAAAACGAA
gi|10 : ----TGTTGTTC-ACTCAGT-ATC-T-TAAG-AAC-ACTTGTGTTT
gi|11 : gcatattagtttgcacctgttggtcagaagaccaatA-----TT-----GA-------TTTTGAG--GGCAC-A-----------------G-TCAA--GCTT-TCTAG--AC--A------------------GTCCATTCAG-TATG-TTGTGAACCT-TTTGCATGA-CAGACATCAAATTTTG--TACACTGGAATGTTCAAAAGAGCAGAcatggcaatacaaatgttttagacattgtatttctctattca
gi|12 : tTTGTCA-ACTCACT-ATC-T-TGAG-AAC-ACTC-TACTTG-AC-AGA-TA----TCAAACTTT-GT-AAACT----GA-TT
gi|13 : tatctatttttaaatcacaaggtgagcaagaatCCTTATTAATT-TTAAGGTCA----CAAGGTCAAG-----------------T---T--GGACATA--G--TAAAA----TATTATCT-GCTCAAT-AT--T-TGAG-AAC-Caccccaagag
gi|15 : ctgacttctcagaagcagtaatgacc-----------------GGTCATATCCTT-TCCGTT-AC--A-GGA-----AAATAT--CGTTCACTCAG-TATC-TTGAGAACCT-TTTGCTTGAGCAGACATCAAA-GTTG--T-ggt
gi|16 : aagGGTCAG-T-T----G--C---T--AG---TG--G--A--AA----TGTTGATT-GCTTAGT-ACC-T-TAAG-AAC-CC-T-TGCTTG-AC-AGa
gi|18 : tattggtttctgcctgttGGTCA-----AAGGTCAAGGTTCAGTT-C----AATC---T--GAACATA-----T--GAAGATTATTGTCT-GCTCA---ATC-T-TGAA-AAcaa
gi|19 : tatag----TGTTGTCT-GCTAAAT-ATC-T-TGAG-AAC-CCTT-
gi|2 : cataatttggtttgcacaagtcaattgaaagaccaagAACGTTCGC-AGACTTAAAGG-TTCTA----TCTAAG-----GAGTAGA-TGAC----TC-----GACTATCTATTTTGAG--GCCAC-AA----------------GGTCAT--CCTACTCTGGTTAT--A-AGAT----A----T--TGTCCGATCA-ACATT-TTGAGAACTT-TCTATTTCA-CAGACATCAAA-GTTAGTT-CACTGGTACCCCC-AAAGAGTAGATAGCGACATTAAGTTTTGTGAAAATATCTT----------GAAATCAGTTTTATCAGAGTGCTAATTTATATCAGACGTATTTTCATTTTCATAATTACCGGCAAGCAAATCTTTATTATCCCATTATCATTCATGAATAGTTTAAAC-------------TAATTAGCCACTGAACTCAAGATAAACGCAGCA--GACA--AAGTT-ATGAGGATGAACACCAACACGCAACAACAACCAAGGTATAACAGTAAAAGGTCAGGAAATGGAAGAAGTGTCTAGCTATTTGTACCTAGGTGGAATGGTAAAA-CAACAGGAGGAACAAATGAAGACATCCAGAGAAGACTAGCCCTAGCAAGATCTGCATCTTTTAGCGATAAAGATACATGTAGTTTATCTGATCTGCCATATAAATGATATCCTGAGAAGTAAAGGATTGGTGGAGGAGAGTCAACACAGTTGTACAT---CAACATAACTAAAATCATAAC-AAAA------------ATTGCGTAAAAGCATTTAATATACAACCTGTCTGCACAGCAATTTGATGAATAAATGTTAAAACA-GTAGCCGTAGCCAATATA-ACATGTAAA-TAAACAGATCTAAAAACATACAAATGT-TAAAAAAGTGAAGATTC-ATAACTCCAACAA-CATG-A-ATCGTTATATAACCAGATTCATT-TTAAGTGTAAAATGGTTAGTATAC-TATCTTGTATTAAATTTTTTGACATCAATTATAATAACCGAAATATATATCATCTGTGACACAAAAGA--TAACATGCAAATGACA-CAGTGTTTTATGTTCATTAAAATATCACGACACAGCACGATATTTGCCTGTATAAAACAACGAAGATTATAATCTTTTAAACAATAACGAA
gi|20 : atctggagGTC-----CAAGGTCATGAGTCAG-TCC----ACTC---T--GGACATA--G--CAAGA----TATTGTCC-ACAC----ATC-T-Tcgtcattttc
gi|22 : tcacataAGGTCA----CAAGATCGAAGGTCAA-TCC----ACTC---T--TTACATA--GGAA--GA----TACTGTCC-ACTCA
gi|23 : AATTTTGGT-ACACT----GG-TTCTA----CCTAAGAC---G--TAGGTTGA-----T------GA-------TTTCGAG--GTCAC-A-----------------GGt
gi|3 : CCTATTTATT-T-----TCA----T---GTCAAGGGTCAA-T-CC---A--C---TCTGGATATA--GGAT--GA----TAATGTCC-GCTCAAT-GTC-T-TAAG-AAC-CC-----ATTG-AC-AAA-CA----TCAAACTTT-GT-AC
gi|3 : gtaatgattttcatatgtaggttggttataagaagaggaatCTT-TCCTTG-AC-AGA-CT----TCAAA-CTTGGA-ACAC-----------------CCCAA------------A-T--------------GA-------TTATGAG--GTCAC-ATGTTGAAG---------GGTCAA-------TCTGG--ACATA-ACA-----A----TAATATCCGCTC-CATATC-TTGATAATCT-TTTGCTTGA-CAGACATtccgataaaatctatggggtgttctttccttgacagacttcaaacttggaacaccccaaatgattatgaggtcacatgttgaagggtcaatctggacataacaataatatccgctccatatcttgataatcttttgcttgacagacat
gi|3 : gtaatgattttcatatgtaggttggttataagaagaggaatcctatttattttcatgtcaagggtcaatccactctggatataggatgataatgtccgctcaatgtcttaagaacccattgacaaacatcaaactttgtactccgataaaatctatggggtgttCCCAAATGATTAT-GAGGTCA----CATGTTGAAGGGTCAA-T-C-----------T--GGACATA--A--C--AA----TAATATCC-GCTCCAT-ATC-T-TGAT-AAT-CTTT-TGCTTG-AC-AGA-CA----T
gi|4 : gtaatgattttcatatgtaggttggttataagaagaggaatcctatttattttcatgtcaagggtcaatccactctggatataggatgataatgtccgctcaatgtcttaagaacccattgacaaacatcaaactttgtactccgataaaatctatggggtgttctttccttgacagacttcaaacttggaacacGATATA--C--C--AG----TGTTGT---ACT--GTGATC-T-TAAG-AAC-GCTT-TGCTTG-CC-AGA-CA----TTAAA-CTTGTT-CTACT----GGCTTCTCTTTTCATAAGAAAAAG--TAGA-TGATTCCTTT-----GG-------TTTTGAGGTGGCAC-AAAGGTTAAAGGTCAAAGGGTCAA--TCTACTCTGA--AC--ATAGAAAGATA----T--TGTGCGCTCA-ATATTCTTGAGAAACTGTCTTCTTGA-CA
gi|5 : gggggcatatatgtttgcacctgtcagccATT-T-GAGGTCA----GAAGGTCAAGGGTTAATT-C----ATTC---C--GGACATAAGG--T--GA----TTCTGTTC-ACTCAttaaactt
gi|6 : cccttagaagaggcgtatggtgcttagcttctccaaattgatcggcaaaacactcaatatcttgggtaccattcacttactcgtaatgctatttcatatgttggtagaagaggacccctAGGGTCAA-T-T----A--TCTGT--GGTCATA--G--GTAGA----TAGTGGTC-ATTCAGT-ATG-T-TGAG-AAC-CCTT-T-CCTA-ACAAAA-CAAAATTCTAA-CTTGGT-GCAC
gi|7 : atattgatatttcatatgtgtaagatataaaaagatgatgcctaattattacattattgGTCGG-T-T----A--G---T--AGGCATA--G--T--G-------TTTTAC--CTCAGT-ATC-T-TAAG-AAC-TCTT-TGCTCG-AC-AGA-CA----TCAGA-CTTGGT-ATACT----GG-acaatcta
gi|8 : tattttatacccctctttaaaatgggtgaggaatattaattagtttgcatgtgtcc-GAGGTCATAATCAAACGCAAGGGTTAA--------A--C---T--AGACATA--G--CATGA----CATCGTCT-GCTTA-T-ATC-TGTTAGCAAT-ACCT-TG---A-AC-AGA-CG----TCAAACC-TGAT-ACACC-----G-TTCT-------------------TAGA-TAA-----CCCTATTAA-------TTTTGAG--ggg
gi|9 : TT-T-GAGATAA----CAAGGTCT-GGGTCAG-T-CTTCTC--C---T--GGACATA--G-----GA----TATTGTCCCGCTCATT-ATCCT-TGAT-AATTCCTT-TGCTTG-GC-AGACCA----TCAAAC----GTAACACT----GG-TTC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TCAGTGTCTCGGGAACCATTCACTTCGTTGTATTATGAATGTTATGAGTGGAAGAGGATTCCTGGTGATTTTCAGGTCAAAAGGTGATGGGT
Unaligned ( gi|17 ): CTCTTGAAAAAATGCATATTGGTTGCGCTTGTTGATTGTATATGAAGTGTTGTTCACTCAATATCTTACTT
Unaligned ( gi|21 ): ACATTTGGTTTGTGCTTGTTGGTCAATGGACCAAATGTTGACCACTCAAAATCTGAACAAC
Alignments
lowQualScore : 1 444444444444444 22222222 11 666666666666666666666666666666666666666666666666 88888888888888888888888888888888888888888888888888888888888 11 1 1 222222 2 1 4444444444 4444444444444 11 11 1 1 11 1 1 3333333 444444444444 222 1 444444444444 1 1 11 1 1 1 1 222 11 1 1 1 1 1 1 11 1 1
lowQualScore : 0 3 5 8888 000000000000000 44 99999999 5555 2 5 2 2 2 2 3 1 3 1 3 3 4 8888 22 3 3 9999 4 666666666666666666666666666666666666666666666666 77 1 6 44444444444444444444444444444444444444444444444444444444444 1 5 88 3 6 6 0 444444 6 6 2 22 1 1111111111 1 1 2 1 9999999999999 1 1 88 88 5 1 5 1 77 1 5 1 1 1 1 5 1 1 2222222 1 1 666666666666 1 111 5 666666666666 22 5 5 66 5 5 5 5 222 88 5 1 5 1 5 5 1 1 1 5 5 1 88 5 5 1 22 1
lowQualScore : . . . .... ............... .. ........ .... . . . . . . . . . . . . . .... .. . . .... . ................................................ .. . . ........................................................... . . .. . . . . ...... . . . .. . .......... . . . . ............. . . .. .. . . . . .. . . . . . . . . . ....... . . ............ . ... . ............ .. . . .. . . . . ... .. . . . . . . . . . . . . .. . . . .. .
lowQualScore : 2 3 7 5555 000000000000000 22 88888888 3333 4 9 7 7 7 9 1 7 1 8 6 6 0 5555 33 6 6 4444 4 111111111111111111111111111111111111111111111111 99 0 7 22222222222222222222222222222222222222222222222222222222222 0 2 22 3 7 7 0 222222 7 7 0 00 0 5555555555 0 0 5 0 5555555555555 0 0 55 55 5 0 5 0 55 0 0 0 0 0 0 5 0 0 5555555 0 0 555555555555 0 555 0 555555555555 00 5 0 55 5 5 0 5 000 55 5 0 5 0 0 5 0 0 0 5 5 0 00 5 5 0 00 0
consensus : CCCTATTGATT-T-GAGGTCA----CAAGGTCAAGGGTCAA-T-C----A--C---T--GGACATA--G--C--GA----TATTGTCC-GCTCAGT-ATC-T-TGAG-AAC-CCTT-TGCTTG-AC-AGA-CA----TCAAACCTTGGT-ACACT----GG-TTCTA----CCTAAG-----G--TAGA-TGA-----TC-----GA-------TTTTGAG--GNCAC-A-----------------GGTCAN--CCTTCTCTGG--AC--A-AGA-----A----T--TGTCCGCTCAGATATT-TTGAGAACCT-TCTGCTTGA-CAGACATCAAA-GTTG--T-CACTGG-ACGCCCGAAAGAGTAGATAGCGACANNAANTTTTGTGAAAATATCTTTATACAAATGGAAATNANTTTTATCAGAGTGCTAATTTATATCAGACGTATTTTCATTTTCATGATTACCGGCAAGCAAATCTTTATNATCCCATTATCATTCATGAATAGTTTAAACATGTACTATAGTCTAATNAGCCACTNGACTCGAGATAAACGCAGCAAAGACATAAAGTTTATGANGATGAGNACCANCGCGCAACAACANCCAAGGTATNACAGCAAAAGGTCAGGAAATGGAAGAAGTGTCTAGCTATNTGTACCTAGGTGGAATNGTAAAAACAACAGGAGGAACAAANGAAGACATCCGGAGAAGACTAGNCCTAGCAAGATCTGCATCTTCTAGCGATAAAGATACATGTAGTTNATNTGATCTGCCATATAAATGATATCCTGAGAAGTAAAGGATTGGTGGANGAGAGTCAACACAGTTGTACATTATCAACATAACTAAAACCATAACCAAAACTGGATCAATATATTGCGTAAAAGCATTTAATATACAACCTGCCTGCACAGCAATTNNATGAATAAATGTTAAAACAAGTGGCCGTAGCCAATATATNCATGTAAAATAAACAGATCTAAAAACATACAAATGTATAAAAAGGTGAAGATTCCATAACTCCAACAAACATGTATATCGTTATATAACCAGATTCATTATTAAGTGTANAATGGTTAGTANACCTATCTTGTATTAANTNTTNTGACATCAATTATAATAACCGAAGTATATNTCATCTGTGACACAAAAGACATAACATGCAAATGACAACAGTGTTTTATGTTCATTAAAATATCACGACACAGCACGATNTTTGCCTGTATAAGACGACGAGGATTATAATCTTNNAAACAANAACGAA
Reference ( family-502 ) : CCCTATTGATT-T-GAGGTCA----CAAGGTCAAGGGTCAA-T-C----A--C---T--GGACATA--G--C--GA----TATTGTCC-GCTCAGT-ATC-T-TGAG-AAC-CCTT-TGCTTG-AC-AGA-CA----TCAAACCTTGGT-ACACT----GG-TTCTA----CCTAAG-----G--TAGA-TGA-----TC-----GA-------TTTTGAG--GNCAC-A-----------------GGTCAN--CCTTCTCTGG--AC--A-AGA-----A----T--TGTCCGCTCAGATATT-TTGAGAACCT-TCTGCTTGA-CAGACATCAAA-GTTG--T-CACTGG-ACGCCCGAAAGAGTAGATAGCGACANNAANTTTTGTGAAAATATCTTTATACAAATGGAAATNANTTTTATCAGAGTGCTAATTTATATCAGACGTATTTTCATTTTCATGATTACCGGCAAGCAAATCTTTATNATCCCATTATCATTCATGAATAGTTTAAACATGTACTATAGTCTAATNAGCCACTNGACTCGAGATAAACGCAGCAAAGACATAAAGTTTATGANGATGAGNACCANCGCGCAACAACANCCAAGGTATNACAGCAAAAGGTCAGGAAATGGAAGAAGTGTCTAGCTATNTGTACCTAGGTGGAATNGTAAAAACAACAGGAGGAACAAANGAAGACATCCGGAGAAGACTAGNCCTAGCAAGATCTGCATCTTCTAGCGATAAAGATACATGTAGTTNATNTGATCTGCCATATAAATGATATCCTGAGAAGTAAAGGATTGGTGGANGAGAGTCAACACAGTTGTACATTATCAACATAACTAAAACCATAACCAAAACTGGATCAATATATTGCGTAAAAGCATTTAATATACAACCTGCCTGCACAGCAATTNNATGAATAAATGTTAAAACAAGTGGCCGTAGCCAATATATNCATGTAAAATAAACAGATCTAAAAACATACAAATGTATAAAAAGGTGAAGATTCCATAACTCCAACAAACATGTATATCGTTATATAACCAGATTCATTATTAAGTGTANAATGGTTAGTANACCTATCTTGTATTAANTNTTNTGACATCAATTATAATAACCGAAGTATATNTCATCTGTGACACAAAAGACATAACATGCAAATGACAACAGTGTTTTATGTTCATTAAAATATCACGACACAGCACGATNTTTGCCTGTATAAGACGACGAGGATTATAATCTTNNAAACAANAACGAA
gi|1 : CCCTATTGATCGT-GAGATCA----CAAGGTCAAGGGTCAA--------A--C---T--GAACATG--G--T--AA----CATTGTAT-GCTTAGT-ATC-T-GGAG-AAC-CAAT-TG-TTGCAC-AGA-C-----TTAAATCCTGGT-ATACT----GG-TTCTA----TCTAGGC----G--TAGA-TGA-----TC-----TA-------TTTTGAG--GCCACCA-----------------GGTTAT--CCTTCTCTGG---------------------C--TATACA---AGATATTGTTGACAACTC-TCTATTTGA-CAGATACCAAA-GT------CA--GG-ACGCCCGGAAGAGTAGATAGCGACAAAAACTTTTGTGAAAATATCTTTATACAAATGAAAATAATTTTTATCAGAGTGCTAATTTATATCAGAAATATTTTCATTTTCATGATTACCGGTAAGCAAATCTTTATAATCCCATTATCATTCATGAATAATTTAAACATGTACTATAGTCTAATAAGCCACTTGACTCGAGATAAACACAGCAAAGACATAAAGTTTATGATG-TGAGAA--ATTGTG-AACAACACTCAAGGTATCACAACAAAAGATCAGGAAATGGAAGAAGTGTCTAGTTATGTGTACTTAGGTGGAATTGTAAAAACAACAGGAAGAACAAAAGAAGATATCCGGAGAAGACTAGGCCTAGCAAGATCTGCATCTTCTAGTGATAAAG---C---TAGTTAATGTGATCTGCCATATAAATGATATC------------GGATTGGTGGATGAGAGTCAACATAGTTGTACATTATCAACATAACTAAAACCATAACCAAAACTGGATCAATATATTGCGTAAAAGCATTTAATATATAACCTACCTGCACAGCAATTATATGAATAAATGTTAAAACAAGTGG-CGTAGCCAATATATTCATGTAAAATAAACAGATCTAAAAACATACAAATGTATAAAAAGGTGAAGATTCCATAACTCCAACAAACATGTATATCGT--TATAACCAGATTCATTATTAAGTGTACAATGGTTAG-AGACCTATC-TGTATTAATTGTTATGACATCAATTAT-ATAACCG-AGTATATTTCATCTGTGACACAAAAGACATAACATGCAAATGACAACAGTGTTTTATG-TCATTAAAATATCACGACACAGCACGATTTTTGCCTGTATAAGACGACGAGGATTATAATCTTAAAAACAAAAACGAA
gi|10 : ----TGTTGTTC-ACTCAGT-ATC-T-TAAG-AAC-ACTTGTGTTT
gi|11 : gcatattagtttgcacctgttggtcagaagaccaatA-----TT-----GA-------TTTTGAG--GGCAC-A-----------------G-TCAA--GCTT-TCTAG--AC--A------------------GTCCATTCAG-TATG-TTGTGAACCT-TTTGCATGA-CAGACATCAAATTTTG--TACACTGGAATGTTCAAAAGAGCAGAcatggcaatacaaatgttttagacattgtatttctctattca
gi|12 : tTTGTCA-ACTCACT-ATC-T-TGAG-AAC-ACTC-TACTTG-AC-AGA-TA----TCAAACTTT-GT-AAACT----GA-TT
gi|13 : tatctatttttaaatcacaaggtgagcaagaatCCTTATTAATT-TTAAGGTCA----CAAGGTCAAG-----------------T---T--GGACATA--G--TAAAA----TATTATCT-GCTCAAT-AT--T-TGAG-AAC-Caccccaagag
gi|15 : ctgacttctcagaagcagtaatgacc-----------------GGTCATATCCTT-TCCGTT-AC--A-GGA-----AAATAT--CGTTCACTCAG-TATC-TTGAGAACCT-TTTGCTTGAGCAGACATCAAA-GTTG--T-ggt
gi|16 : aagGGTCAG-T-T----G--C---T--AG---TG--G--A--AA----TGTTGATT-GCTTAGT-ACC-T-TAAG-AAC-CC-T-TGCTTG-AC-AGa
gi|18 : tattggtttctgcctgttGGTCA-----AAGGTCAAGGTTCAGTT-C----AATC---T--GAACATA-----T--GAAGATTATTGTCT-GCTCA---ATC-T-TGAA-AAcaa
gi|19 : tatag----TGTTGTCT-GCTAAAT-ATC-T-TGAG-AAC-CCTT-
gi|2 : cataatttggtttgcacaagtcaattgaaagaccaagAACGTTCGC-AGACTTAAAGG-TTCTA----TCTAAG-----GAGTAGA-TGAC----TC-----GACTATCTATTTTGAG--GCCAC-AA----------------GGTCAT--CCTACTCTGGTTAT--A-AGAT----A----T--TGTCCGATCA-ACATT-TTGAGAACTT-TCTATTTCA-CAGACATCAAA-GTTAGTT-CACTGGTACCCCC-AAAGAGTAGATAGCGACATTAAGTTTTGTGAAAATATCTT----------GAAATCAGTTTTATCAGAGTGCTAATTTATATCAGACGTATTTTCATTTTCATAATTACCGGCAAGCAAATCTTTATTATCCCATTATCATTCATGAATAGTTTAAAC-------------TAATTAGCCACTGAACTCAAGATAAACGCAGCA--GACA--AAGTT-ATGAGGATGAACACCAACACGCAACAACAACCAAGGTATAACAGTAAAAGGTCAGGAAATGGAAGAAGTGTCTAGCTATTTGTACCTAGGTGGAATGGTAAAA-CAACAGGAGGAACAAATGAAGACATCCAGAGAAGACTAGCCCTAGCAAGATCTGCATCTTTTAGCGATAAAGATACATGTAGTTTATCTGATCTGCCATATAAATGATATCCTGAGAAGTAAAGGATTGGTGGAGGAGAGTCAACACAGTTGTACAT---CAACATAACTAAAATCATAAC-AAAA------------ATTGCGTAAAAGCATTTAATATACAACCTGTCTGCACAGCAATTTGATGAATAAATGTTAAAACA-GTAGCCGTAGCCAATATA-ACATGTAAA-TAAACAGATCTAAAAACATACAAATGT-TAAAAAAGTGAAGATTC-ATAACTCCAACAA-CATG-A-ATCGTTATATAACCAGATTCATT-TTAAGTGTAAAATGGTTAGTATAC-TATCTTGTATTAAATTTTTTGACATCAATTATAATAACCGAAATATATATCATCTGTGACACAAAAGA--TAACATGCAAATGACA-CAGTGTTTTATGTTCATTAAAATATCACGACACAGCACGATATTTGCCTGTATAAAACAACGAAGATTATAATCTTTTAAACAATAACGAA
gi|20 : atctggagGTC-----CAAGGTCATGAGTCAG-TCC----ACTC---T--GGACATA--G--CAAGA----TATTGTCC-ACAC----ATC-T-Tcgtcattttc
gi|22 : tcacataAGGTCA----CAAGATCGAAGGTCAA-TCC----ACTC---T--TTACATA--GGAA--GA----TACTGTCC-ACTCA
gi|23 : AATTTTGGT-ACACT----GG-TTCTA----CCTAAGAC---G--TAGGTTGA-----T------GA-------TTTCGAG--GTCAC-A-----------------GGt
gi|3 : CCTATTTATT-T-----TCA----T---GTCAAGGGTCAA-T-CC---A--C---TCTGGATATA--GGAT--GA----TAATGTCC-GCTCAAT-GTC-T-TAAG-AAC-CC-----ATTG-AC-AAA-CA----TCAAACTTT-GT-AC
gi|3 : gtaatgattttcatatgtaggttggttataagaagaggaatCTT-TCCTTG-AC-AGA-CT----TCAAA-CTTGGA-ACAC-----------------CCCAA------------A-T--------------GA-------TTATGAG--GTCAC-ATGTTGAAG---------GGTCAA-------TCTGG--ACATA-ACA-----A----TAATATCCGCTC-CATATC-TTGATAATCT-TTTGCTTGA-CAGACATtccgataaaatctatggggtgttctttccttgacagacttcaaacttggaacaccccaaatgattatgaggtcacatgttgaagggtcaatctggacataacaataatatccgctccatatcttgataatcttttgcttgacagacat
gi|3 : gtaatgattttcatatgtaggttggttataagaagaggaatcctatttattttcatgtcaagggtcaatccactctggatataggatgataatgtccgctcaatgtcttaagaacccattgacaaacatcaaactttgtactccgataaaatctatggggtgttCCCAAATGATTAT-GAGGTCA----CATGTTGAAGGGTCAA-T-C-----------T--GGACATA--A--C--AA----TAATATCC-GCTCCAT-ATC-T-TGAT-AAT-CTTT-TGCTTG-AC-AGA-CA----T
gi|4 : gtaatgattttcatatgtaggttggttataagaagaggaatcctatttattttcatgtcaagggtcaatccactctggatataggatgataatgtccgctcaatgtcttaagaacccattgacaaacatcaaactttgtactccgataaaatctatggggtgttctttccttgacagacttcaaacttggaacacGATATA--C--C--AG----TGTTGT---ACT--GTGATC-T-TAAG-AAC-GCTT-TGCTTG-CC-AGA-CA----TTAAA-CTTGTT-CTACT----GGCTTCTCTTTTCATAAGAAAAAG--TAGA-TGATTCCTTT-----GG-------TTTTGAGGTGGCAC-AAAGGTTAAAGGTCAAAGGGTCAA--TCTACTCTGA--AC--ATAGAAAGATA----T--TGTGCGCTCA-ATATTCTTGAGAAACTGTCTTCTTGA-CA
gi|5 : gggggcatatatgtttgcacctgtcagccATT-T-GAGGTCA----GAAGGTCAAGGGTTAATT-C----ATTC---C--GGACATAAGG--T--GA----TTCTGTTC-ACTCAttaaactt
gi|6 : cccttagaagaggcgtatggtgcttagcttctccaaattgatcggcaaaacactcaatatcttgggtaccattcacttactcgtaatgctatttcatatgttggtagaagaggacccctAGGGTCAA-T-T----A--TCTGT--GGTCATA--G--GTAGA----TAGTGGTC-ATTCAGT-ATG-T-TGAG-AAC-CCTT-T-CCTA-ACAAAA-CAAAATTCTAA-CTTGGT-GCAC
gi|7 : atattgatatttcatatgtgtaagatataaaaagatgatgcctaattattacattattgGTCGG-T-T----A--G---T--AGGCATA--G--T--G-------TTTTAC--CTCAGT-ATC-T-TAAG-AAC-TCTT-TGCTCG-AC-AGA-CA----TCAGA-CTTGGT-ATACT----GG-acaatcta
gi|8 : tattttatacccctctttaaaatgggtgaggaatattaattagtttgcatgtgtcc-GAGGTCATAATCAAACGCAAGGGTTAA--------A--C---T--AGACATA--G--CATGA----CATCGTCT-GCTTA-T-ATC-TGTTAGCAAT-ACCT-TG---A-AC-AGA-CG----TCAAACC-TGAT-ACACC-----G-TTCT-------------------TAGA-TAA-----CCCTATTAA-------TTTTGAG--ggg
gi|9 : TT-T-GAGATAA----CAAGGTCT-GGGTCAG-T-CTTCTC--C---T--GGACATA--G-----GA----TATTGTCCCGCTCATT-ATCCT-TGAT-AATTCCTT-TGCTTG-GC-AGACCA----TCAAAC----GTAACACT----GG-TTC
blockSeqs : A T TAAT TCTTCTCC CT GTAA AGAT C G G C G C T T G T . A C AAAT CT C A TAAA C CTTTTCATAAGAAAAAGTAGATGATTCCTTTGG GT G . AAGGTTAAAGGTCAAAGGGTCAATCTACTCTGAACATAGAAAGATAT C T CA C G G T TAGTT C A A TT G . C G C T . T G . . . G A C CC A C A A T G . T C ATACATG T C CTGAGAAGTAAA G . . . TG . C A . . . . A TA . A T T . T A T T A A A . . T A TT T
blockSeqs : . . . TTCAATC . GCAA . . C . . . . . T . C . . . . CG G . . . ATCTAAGGAGTAGATGACTCGACTATCTA . C . TGTTGAAGGGTCAATCTGGACATAACAATAA T C G . . . . TGTA C T .
blockSeqs : . . . TCCACTC . GGAA . . A . . . . . T . C . . . . TT G . . . ACCTAAGACGTAGGTTGATGA . T . GGTCATATCCTTTCCGTTACAGGAAAATAT C A G . . . . TGT
blockSeqs : . . . TCCACTC . GGAT . . G . . . . . T . A . . . . CT G . . . TAGATAACCCTATTAA . T . AGGTCATCCTACTCTGGTTATAAGATAT C C A . . .
blockSeqs : . . . TTCATTC . AGGT . . A . . . . . T . C . . . . CC G . . . CCCAAATGA . G . GTCAAGCTTTCTAGACA G C A . . .
blockSeqs : . . TTATCTG . GGTA . . A . . . . . T . C . . . . C G . . . .
blockSeqs : . TCCAC . GCAT . . A . . . . . T . C . . . . C G . . .
blockSeqs : . TTGC . GA . . G . . . . . T . C . . . . C . . . .
blockSeqs : . TTAG . AC . . G . . . . . C . C . . . . C . .
blockSeqs : TC . CC . . G . . . . . T . C . . C . .
blockSeqs : AC . GT . . T . . . . . . . .
blockSeqs : T . T . . . . . . . . . .
blockSeqs : G . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . .
blockSeqs : .
blockSeqCons : TTCATC********* GGAN**** CCTAAGAGTAGATGACCCACTGA************************* G*
originalCons : CCCTATTGATT-T-GAGGTCA----CAAGGTCAAGGGTCAA-T-C----A--C---T--GGACATA--G--C--GA----TATTGTCC-GCTCAGT-ATC-T-TGAG-AAC-CCTT-TGCTTG-AC-AGA-CA----TCAAACCTTGGT-ACACT----GG-TTCTA----CCTAAG-----G--TAGA-TGA-----TC-----GA-------TTTTGAG--GNCAC-A-----------------GGTCAN--CCTTCTCTGG--AC--A-AGA-----A----T--TGTCCGCTCAGATATT-TTGAGAACCT-TCTGCTTGA-CAGACATCAAA-GTTG--T-CACTGG-ACGCCCGAAAGAGTAGATAGCGACANNAANTTTTGTGAAAATATCTTTATACAAATGGAAATNANTTTTATCAGAGTGCTAATTTATATCAGACGTATTTTCATTTTCATGATTACCGGCAAGCAAATCTTTATNATCCCATTATCATTCATGAATAGTTTAAACATGTACTATAGTCTAATNAGCCACTNGACTCGAGATAAACGCAGCAAAGACATAAAGTTTATGANGATGAGNACCANCGCGCAACAACANCCAAGGTATNACAGCAAAAGGTCAGGAAATGGAAGAAGTGTCTAGCTATNTGTACCTAGGTGGAATNGTAAAAACAACAGGAGGAACAAANGAAGACATCCGGAGAAGACTAGNCCTAGCAAGATCTGCATCTTCTAGCGATAAAGATACATGTAGTTNATNTGATCTGCCATATAAATGATATCCTGAGAAGTAAAGGATTGGTGGANGAGAGTCAACACAGTTGTACATTATCAACATAACTAAAACCATAACCAAAACTGGATCAATATATTGCGTAAAAGCATTTAATATACAACCTGCCTGCACAGCAATTNNATGAATAAATGTTAAAACAAGTGGCCGTAGCCAATATATNCATGTAAAATAAACAGATCTAAAAACATACAAATGTATAAAAAGGTGAAGATTCCATAACTCCAACAAACATGTATATCGTTATATAACCAGATTCATTATTAAGTGTANAATGGTTAGTANACCTATCTTGTATTAANTNTTNTGACATCAATTATAATAACCGAAGTATATNTCATCTGTGACACAAAAGACATAACATGCAAATGACAACAGTGTTTTATGTTCATTAAAATATCACGACACAGCACGATNTTTGCCTGTATAAGACGACGAGGATTATAATCTTNNAAACAANAACGAA
finalCons : CCCTATTGATT-T-GAGGTCA----CAAGGTCAAGGGTCAATTCATC---------T--GGACATAGGAN----GA----TATTGTCC-GCTCAGT-ATC-T-TGAG-AAC-CCTT-TGCTTG-AC-AGA-CA----TCAAACCTTGGT-ACACT----GG-TTCTCCTAAGAGTAGATGACCCACTGA-------------------------TTTTGAG--GNCAC-A-----------------GGTCAN--CCTTCTCTGG--AC--A-AGA-----A----T--TGTCCGCTCAG-TATT-TTGAGAACCT-TCTGCTTGA-CAGACATCAAA-GTTG--T-CACTGG-ACGCCCGAAAGAGTAGATAGCGACANNAANTTTTGTGAAAATATCTTTATACAAATGGAAATNANTTTTATCAGAGTGCTAATTTATATCAGACGTATTTTCATTTTCATGATTACCGGCAAGCAAATCTTTATNATCCCATTATCATTCATGAATAGTTTAAACATGTACTATAGTCTAATNAGCCACTNGACTCGAGATAAACGCAGCAAAGACATAAAGTTTATGANGATGAGNACCANCGCGCAACAACANCCAAGGTATNACAGCAAAAGGTCAGGAAATGGAAGAAGTGTCTAGCTATNTGTACCTAGGTGGAATNGTAAAAACAACAGGAGGAACAAANGAAGACATCCGGAGAAGACTAGNCCTAGCAAGATCTGCATCTTCTAGCGATAAAGATACATGTAGTTNATNTGATCTGCCATATAAATGATATCCTGAGAAGTAAAGGATTGGTGGANGAGAGTCAACACAGTTGTACATTATCAACATAACTAAAACCATAACCAAAACTGGATCAATATATTGCGTAAAAGCATTTAATATACAACCTGCCTGCACAGCAATTNNATGAATAAATGTTAAAACAAGTGGCCGTAGCCAATATATNCATGTAAAATAAACAGATCTAAAAACATACAAATGTATAAAAAGGTGAAGATTCCATAACTCCAACAAACATGTATATCGTTATATAACCAGATTCATTATTAAGTGTANAATGGTTAGTANACCTATCTTGTATTAANTNTTNTGACATCAATTATAATAACCGAAGTATATNTCATCTGTGACACAAAAGACATAACATGCAAATGACAACAGTGTTTTATGTTCATTAAAATATCACGACACAGCACGATNTTTGCCTGTATAAGACGACGAGGATTATAATCTTNNAAACAANAACGAA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TCAGTGTCTCGGGAACCATTCACTTCGTTGTATTATGAATGTTATGAGTGGAAGAGGATTCCTGGTGATTTTCAGGTCAAAAGGTGATGGGT
Unaligned ( gi|17 ): CTCTTGAAAAAATGCATATTGGTTGCGCTTGTTGATTGTATATGAAGTGTTGTTCACTCAATATCTTACTT
Unaligned ( gi|21 ): ACATTTGGTTTGTGCTTGTTGGTCAATGGACCAAATGTTGACCACTCAAAATCTGAACAAC
Alignments
lowQualScore : 33333333333 11 55555555555555555555555555555555555555555555555555555555555555555555555555555555 111111 8888888888888888888888888888888888888888888888888888888888888 111 333333333 2 1 4444444444 4444444444444 11 11 1 1 11 1 1 3333333 444444444444 222 1 444444444444 1 1 11 1 1 1 1 222 11 1 1 1 1 1 1 11 1 1
lowQualScore : 3 8 77 99999 11111111111 44 1 55 66 2 5 2 2 2 2 2 3 2 4 4 4 4 9999 00 5 4 22222222222222222222222222222222222222222222222222222222222222222222222222222222 222222 66 5 4444444444444444444444444444444444444444444444444444444444444 3 1 2 000 6 7 3 3 111111111 2 0 2 22 1 1111111111 1 1 2 1 9999999999999 1 1 88 88 5 1 5 1 77 1 5 1 1 1 1 5 1 1 2222222 1 1 666666666666 1 111 5 666666666666 22 5 5 66 5 5 5 5 222 88 5 1 5 1 5 5 1 1 1 5 5 1 88 5 5 1 22 1
lowQualScore : . . .. ..... ........... .. . .. .. . . . . . . . . . . . . . .... .. . . ................................................................................ ...... .. . ............................................................. . . . ... . . . . ......... . . . .. . .......... . . . . ............. . . .. .. . . . . .. . . . . . . . . . ....... . . ............ . ... . ............ .. . . .. . . . . ... .. . . . . . . . . . . . . .. . . . .. .
lowQualScore : 7 0 77 66666 99999999999 66 5 22 88 7 9 7 7 9 9 6 3 8 0 0 0 4 4444 55 0 0 88888888888888888888888888888888888888888888888888888888888888888888888888888888 888888 11 9 9999999999999999999999999999999999999999999999999999999999999 0 7 7 666 7 8 2 8 888888888 5 0 0 00 0 5555555555 0 0 5 0 5555555555555 0 0 55 55 5 0 5 0 55 0 0 0 0 0 0 5 0 0 5555555 0 0 555555555555 0 555 0 555555555555 00 5 0 55 5 5 0 5 000 55 5 0 5 0 0 5 0 0 0 5 5 0 00 5 5 0 00 0
consensus : CCCTATTNATT-T-GAGGTCA----CAAGGTCAAGGGTCA-AT--CC-A-TCTG--GACATAGGAAGA--TATTGT-CCGCTCAGTAT-CT-TGAG-AA-CCCTT-TGCTTG-A-C-AGA-CA----TCAAACCTTGGT-ACACT----G----------------G-TTC--T-CCT---------A-AG-A-GT--AGA--TG----A--CCC---ATTG---ATT------TTGAG--GNCAC-A-----------------GGTCAACCTTCTCTGG----AC--AT----AGAT----AT--TGTCCGCTCAATATT-TTGAGAACCT-TCTGCTTGACAGACATCAAA-GTTN--T-CACTGG-ACGCCCGAAAGAGTAGATAGCGACANNAANTTTTGTGAAAATATCTTTATACAAATGGAAATNANTTTTATCAGAGTGCTAATTTATATCAGACGTATTTTCATTTTCATGATTACCGGCAAGCAAATCTTTATNATCCCATTATCATTCATGAATAGTTTAAACATGTACTATAGTCTAATNAGCCACTNGACTCGAGATAAACGCAGCAAAGACATAAAGTTTATGANGATGAGNACCANCGCGCAACAACANCCAAGGTATNACAGCAAAAGGTCAGGAAATGGAAGAAGTGTCTAGCTATNTGTACCTAGGTGGAATNGTAAAAACAACAGGAGGAACAAANGAAGACATCCGGAGAAGACTAGNCCTAGCAAGATCTGCATCTTCTAGCGATAAAGATACATGTAGTTNATNTGATCTGCCATATAAATGATATCCTGAGAAGTAAAGGATTGGTGGANGAGAGTCAACACAGTTGTACATTATCAACATAACTAAAACCATAACCAAAACTGGATCAATATATTGCGTAAAAGCATTTAATATACAACCTGCCTGCACAGCAATTNNATGAATAAATGTTAAAACAAGTGGCCGTAGCCAATATATNCATGTAAAATAAACAGATCTAAAAACATACAAATGTATAAAAAGGTGAAGATTCCATAACTCCAACAAACATGTATATCGTTATATAACCAGATTCATTATTAAGTGTANAATGGTTAGTANACCTATCTTGTATTAANTNTTNTGACATCAATTATAATAACCGAAGTATATNTCATCTGTGACACAAAAGACATAACATGCAAATGACAACAGTGTTTTATGTTCATTAAAATATCACGACACAGCACGATNTTTGCCTGTATAAGACGACGAGGATTATAATCTTNNAAACAANAACGAA
Reference ( family-502 ) : CCCTATTGATT-T-GAGGTCA----CAAGGTCAAGGGTCA-AT--TC-A-TCTG--GACATAGGANGA--TATTGT-CCGCTCAGTAT-CT-TGAG-AA-CCCTT-TGCTTG-A-C-AGA-CA----TCAAACCTTGGT-ACACT----G----------------G-TTC--T-CCT---------A-AG-A-GT--AGA--TG----A--CCC---ACTG---ATT------TTGAG--GNCAC-A-----------------GGTCANCCTTCTCTGG----AC--A-----AGA-----AT--TGTCCGCTCAGTATT-TTGAGAACCT-TCTGCTTGACAGACATCAAA-GTTG--T-CACTGG-ACGCCCGAAAGAGTAGATAGCGACANNAANTTTTGTGAAAATATCTTTATACAAATGGAAATNANTTTTATCAGAGTGCTAATTTATATCAGACGTATTTTCATTTTCATGATTACCGGCAAGCAAATCTTTATNATCCCATTATCATTCATGAATAGTTTAAACATGTACTATAGTCTAATNAGCCACTNGACTCGAGATAAACGCAGCAAAGACATAAAGTTTATGANGATGAGNACCANCGCGCAACAACANCCAAGGTATNACAGCAAAAGGTCAGGAAATGGAAGAAGTGTCTAGCTATNTGTACCTAGGTGGAATNGTAAAAACAACAGGAGGAACAAANGAAGACATCCGGAGAAGACTAGNCCTAGCAAGATCTGCATCTTCTAGCGATAAAGATACATGTAGTTNATNTGATCTGCCATATAAATGATATCCTGAGAAGTAAAGGATTGGTGGANGAGAGTCAACACAGTTGTACATTATCAACATAACTAAAACCATAACCAAAACTGGATCAATATATTGCGTAAAAGCATTTAATATACAACCTGCCTGCACAGCAATTNNATGAATAAATGTTAAAACAAGTGGCCGTAGCCAATATATNCATGTAAAATAAACAGATCTAAAAACATACAAATGTATAAAAAGGTGAAGATTCCATAACTCCAACAAACATGTATATCGTTATATAACCAGATTCATTATTAAGTGTANAATGGTTAGTANACCTATCTTGTATTAANTNTTNTGACATCAATTATAATAACCGAAGTATATNTCATCTGTGACACAAAAGACATAACATGCAAATGACAACAGTGTTTTATGTTCATTAAAATATCACGACACAGCACGATNTTTGCCTGTATAAGACGACGAGGATTATAATCTTNNAAACAANAACGAA
gi|1 : CCCTATTGATCGT-GAGATCA----CAAGGTCAAGGGTCA-A------A--CTG--AACATGGTA--A--CATTGT-ATGCTTAGTAT-CT-GGAG-AA-CCAAT-TG-TTGCA-C-AGA-C-----TTAAATCCTGGT-ATACT----G----------------G-TTC--TATCT---------A-GG-C-GT--AGA--TG----A--TCT---A-------TT------TTGAG--GCCACCA-----------------GGTTATCCTTCTCTGGCTATAC--A-----AGAT----AT--TGT--------------TGACAACTC-TCTATTTGACAGATACCAAA-GT------CA--GG-ACGCCCGGAAGAGTAGATAGCGACAAAAACTTTTGTGAAAATATCTTTATACAAATGAAAATAATTTTTATCAGAGTGCTAATTTATATCAGAAATATTTTCATTTTCATGATTACCGGTAAGCAAATCTTTATAATCCCATTATCATTCATGAATAATTTAAACATGTACTATAGTCTAATAAGCCACTTGACTCGAGATAAACACAGCAAAGACATAAAGTTTATGATG-TGAGAA--ATTGTG-AACAACACTCAAGGTATCACAACAAAAGATCAGGAAATGGAAGAAGTGTCTAGTTATGTGTACTTAGGTGGAATTGTAAAAACAACAGGAAGAACAAAAGAAGATATCCGGAGAAGACTAGGCCTAGCAAGATCTGCATCTTCTAGTGATAAAG---C---TAGTTAATGTGATCTGCCATATAAATGATATC------------GGATTGGTGGATGAGAGTCAACATAGTTGTACATTATCAACATAACTAAAACCATAACCAAAACTGGATCAATATATTGCGTAAAAGCATTTAATATATAACCTACCTGCACAGCAATTATATGAATAAATGTTAAAACAAGTGG-CGTAGCCAATATATTCATGTAAAATAAACAGATCTAAAAACATACAAATGTATAAAAAGGTGAAGATTCCATAACTCCAACAAACATGTATATCGT--TATAACCAGATTCATTATTAAGTGTACAATGGTTAG-AGACCTATC-TGTATTAATTGTTATGACATCAATTAT-ATAACCG-AGTATATTTCATCTGTGACACAAAAGACATAACATGCAAATGACAACAGTGTTTTATG-TCATTAAAATATCACGACACAGCACGATTTTTGCCTGTATAAGACGACGAGGATTATAATCTTAAAAACAAAAACGAA
gi|10 : TG--GTCAGAAGACCAATTGTTGT-TCACTCAGTAT-CT-TAAG-AA-CACTTGTGTTT
gi|11 : gcatattagtttgcacctgt---ATTG---ATT------TTGAG--GGCAC-A-----------------G-TCAAGCTT-TCTAG----AC--A------------------GTCCATTCAGTATG-TTGTGAACCT-TTTGCATGACAGACATCAAATTTTG--TACACTGGAATGTTCAAAAGAGCAGAcatggcaatacaaatgttttagacattgtatttctctattca
gi|12 : tTTGT-CAACTCACTAT-CT-TGAG-AA-CACTC-TACTTG-A-C-AGA-TA----TCAAACTTT-GT-AAACT----G----------------A-TTA--C-CCC---------A-AG-A-G
gi|13 : tatctatttttaaatcacaaggtgagcaagaat-TTC--T-CAG---------A-AGCA-GT--A-A--TG----A--CCCCTTATTA---ATT------TTAAG--GTCACAA-----------------GGTCAA-----GTTGG----AC--ATAGT-AAAAT---AT--TATCTGCTCAATA-T-TTGAGAACC
gi|13 : ctgacCCTTATTAATT-TTAAGGTCA----CAAGGTCAAG----------------TTG--GACATAGTAAAA--TATTAT-CTGCTCAATAT--T-TGAG-AA-CCggt
gi|15 : ctgacttctcagaagcagtaatgaccAAGGGTCATAT--CC-T-TTCC--GTTACAGGAAAA--TATCGT-TCACTCAGTAT-CT-TGAG-AA-CCTTT-TGCTTG-AGC-AGA-CA----TCAAAggt
gi|16 : GGAA-A--TGTTGA-TTGCTTAGTAC-CT-TAAG-AA-CCC-T-TGCTTG-A-C-AGgttgta
gi|18 : tattggtttctgcctgttggtcagttgctagtGGTCA-----AAGGTCAAGGTTCA-GT--TCAA-TCTG--AACATATGAAGAT-TATTGT-CTGCTCA--AT-CT-TGAA-AA-caa
gi|19 : tatag--TGTTGT-CTGCTAAATAT-CT-TGAG-AA-CCCTT-
gi|2 : cataatttggtttgcacaagtcaattgaaagaccaagAACGTTCGC-AGACTTAAAG----------------G-TTC--TATCT---------A-AGGA-GT--AGA--TG----A--CTCG--ACTATCTATT------TTGAG--GCCAC-AA----------------GGTCATCCTACTCTGGTT--AT--A-----AGAT----AT--TGTCCGATCAACATT-TTGAGAACTT-TCTATTTCACAGACATCAAA-GTTAGTT-CACTGGTACCCCC-AAAGAGTAGATAGCGACATTAAGTTTTGTGAAAATATCTT----------GAAATCAGTTTTATCAGAGTGCTAATTTATATCAGACGTATTTTCATTTTCATAATTACCGGCAAGCAAATCTTTATTATCCCATTATCATTCATGAATAGTTTAAAC-------------TAATTAGCCACTGAACTCAAGATAAACGCAGCA--GACA--AAGTT-ATGAGGATGAACACCAACACGCAACAACAACCAAGGTATAACAGTAAAAGGTCAGGAAATGGAAGAAGTGTCTAGCTATTTGTACCTAGGTGGAATGGTAAAA-CAACAGGAGGAACAAATGAAGACATCCAGAGAAGACTAGCCCTAGCAAGATCTGCATCTTTTAGCGATAAAGATACATGTAGTTTATCTGATCTGCCATATAAATGATATCCTGAGAAGTAAAGGATTGGTGGAGGAGAGTCAACACAGTTGTACAT---CAACATAACTAAAATCATAAC-AAAA------------ATTGCGTAAAAGCATTTAATATACAACCTGTCTGCACAGCAATTTGATGAATAAATGTTAAAACA-GTAGCCGTAGCCAATATA-ACATGTAAA-TAAACAGATCTAAAAACATACAAATGT-TAAAAAAGTGAAGATTC-ATAACTCCAACAA-CATG-A-ATCGTTATATAACCAGATTCATT-TTAAGTGTAAAATGGTTAGTATAC-TATCTTGTATTAAATTTTTTGACATCAATTATAATAACCGAAATATATATCATCTGTGACACAAAAGA--TAACATGCAAATGACA-CAGTGTTTTATGTTCATTAAAATATCACGACACAGCACGATATTTGCCTGTATAAAACAACGAAGATTATAATCTTTTAAACAATAACGAA
gi|20 : atctggagGTC-----CAAGGTCATGAGTCA-GT--CC-ACTCTG--GACATAGCAAGA--TATTGT-CCACAC---AT-CT-Tcgtcattttc
gi|22 : tcacataAGGTCA----CAAGATCGAAGGTCA-AT--CC-ACTCTT--TACATAGGAAGA--TACTGT-CCACTCA
gi|23 : AATTTTGGT-ACACT----G----------------G-TTC--TACCT---------A-AG-ACGT--AGGT-TG----A----------TG---ATT------TCGAG--GTCAC-A-----------------GGt
gi|3 : CCTATTTATT-T-----TCA----T---GTCAAGGGTCA-AT--CC-ACTCTG--GATATAGGATGA--TAATGT-CCGCTCAATGT-CT-TAAG-AA-CCC-----ATTG-A-C-AAA-CA----TCAAACTTT-GT-ACTCC----GATAAAATCTATGGGGTG-TTCTTT-CCTTG-------ACAG-A-CTTCAAACTTGGAACA--CCCCA-AATG---ATT------ATGAG--GTCAC-ATGTTGAAG---------GGTCAA-----TCTGG----ACATA-----ACA-----ATAATATCCGCTCCATATC-TTGATAATCT-TTTGCTTGACAGACAT
gi|4 : gtaatgattttcatatgtaggttggttataagaagaggaatAT-CT-TAAG-AA-CGCTT-TGCTTG-C-C-AGA-CA----TTAAA-CTTGTT-CTACT----G----------------GCTTC--T-CTTTTCATAAGAA-AA-A-GT--AGA--TG----AT-TCC---TTTG---GTT------TTGAGGTGGCAC-AAAGGTTAAAGGTCAAAGGGTCAATCTACTCTGA----AC--AT----AGAAAGATAT--TGTGCGCTCAATATTCTTGAGAAACTGTCTTCTTGACA
gi|5 : gggggcatatatgtttgcacctgtcagccgatataccagtgttgtactgtgATT-T-GAGGTCA----GAAGGTCAAGGGTTA-AT--TC-ATTCCG--GACATAAGGTGA--TTCTGT-TCACTCAttaaactt
gi|6 : cccttagaagaggcgtatggtgcttagcttctccaaattgatcggcaaaacactcaatatcttgggtaccattcacttactcgtaatgctatttcatatgttggtagaagaggacccct--AGA--TG----ATGCCT---AATT---ATTACATTATTGAG--G------------------------GTCAATTATCTGTGG----TC--ATAGGTAGAT----AG--TGGTCATTCAGTATG-TTGAGAACCC-TTT-CCTAACAAA-A-CAAA-ATTC--T-AACTTG-GTGC
gi|6 : atattgatatttcatatgtgtaagatataaaaAGGGTCA-AT--T--A-TCTGTGGTCATAGGTAGA--TAGTGG-TCATTCAGTAT-GT-TGAG-AA-CCCTT-T-CCTA-A-CAAAA-CAAAATTCTAA-CTTGGT-GCACacacaatcta
gi|7 : atattgatatttcatatgtgtaagatataaaaagatgatgcctaattattacattattgCTCAGTAT-CT-TAAG-AA-CTCTT-TGCTCG-A-C-AGA-CA----TCAGA-CTTGGT-ATACT----G----------------G-acaatcta
gi|8 : tattttatacccctctttaaaatgggtgaggaatattaattagtttgcatgtgtccgtcggttagtaggcatagtgttttac-GAGGTCATAATCAAACGCAAGGGTTA-A------A--CTA--GACATAGCATGA--CATCGT-CTGCTTA-TAT-CTGTTAGCAA-TACCT-TG---A-A-C-AGA-CG----TCAAACC-TGAT-ACACC---------------------G-TTC--T---------------------T--AGA--TA----A--CCCT--ATTA---ATT------TTGAG--ggg
gi|9 : TT-T-GAGATAA----CAAGGTCT-GGGTCA-GTCTTC-T-CCTG--GACATAG---GA--TATTGTCCCGCTCATTATCCT-TGAT-AATTCCTT-TGCTTG-G-C-AGACCA----TCAAAC----GTAACACT----G----------------G-TTC--C-CC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TCAGTGTCTCGGGAACCATTCACTTCGTTGTATTATGAATGTTATGAGTGGAAGAGGATTCCTGGTGATTTTCAGGTCAAAAGGTGATGGGT
Unaligned ( gi|17 ): CTCTTGAAAAAATGCATATTGGTTGCGCTTGTTGATTGTATATGAAGTGTTGTTCACTCAATATCTTACTT
Unaligned ( gi|21 ): ACATTTGGTTTGTGCTTGTTGGTCAATGGACCAAATGTTGACCACTCAAAATCTGAACAAC