lowQualScore : 111111 11111111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 1 11 111111 222 44444444 1 444 1 1 55555 1 1 1 2 1 2 222 1 3333 6666 11 1 11 11 666666666666 1 1 11 1 1 2 11 1 333 11 222 4444444444 1 2222 222 11 33 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111 2 3333333333 7777777777 2
lowQualScore : 6 5 22 6 555555 6 000 55555555 7 555 5 6 7 22222 6 6 5 5 6 7 6 6 6 0 2 66 0 8 2 111 2 2 2 0 2222 2222 55 6 3 1 111 0 6 55 44 0 6 6 0 2 555 22 4 88 666666666666 3 3 44 1 2 3 3 33 3 3 333 88 333 0 6 4444444444 3 6 0000 2 4 444 9 00 3 00 6 3 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 666 6 3 7777777777 44 7777777777 3 6 6
lowQualScore : . . .. . ...... . ... ........ . ... . . . ..... . . . . . . . . . . . .. . . . ... . . . . .... .... .. . . . ... . . .. .. . . . . . ... .. . .. ............ . . .. . . . . .. . . ... .. ... . . .......... . . .... . . ... . .. . .. . . ...................................................................................................................................................... ... . . .......... .. .......... . . .
lowQualScore : 0 0 00 0 000000 0 000 00000000 0 000 0 0 0 00000 0 0 0 0 0 0 0 0 0 0 5 55 5 5 5 555 5 5 5 5 5555 5555 55 0 7 0 000 7 7 77 33 7 0 0 0 2 000 55 5 33 000000000000 3 3 00 0 0 3 3 77 3 7 777 77 333 7 0 7777777777 3 7 0000 5 5 000 2 55 8 00 0 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 777 0 7 7777777777 33 0000000000 3 0 0
consensus : NNNAGGAACCCTCTACTCGGGAA------CGTCAACGTGGACCCCGGAGCGCGTCCCTGTGCCCTTTTGAAGGATGCCAAATACGGACCCGCAAGCTGTGGGA-CATTGCGCACCTCCACCCGGTATTCCGACTGAGTGTCCCCTCTGTTCCGGAGGCGTGTCGCCTCCGGATGAGGGTGCTCTGTTGGTTGGCAGACCAGCTCCTGGGCCCCAACAGAACCGCGGCGGAGTGCGGCGGACCCNGCCCNNGTNTTTTCCGGNCCGNAGCGCNCCNCTNCCCGGGCACCNGATCGAGGAGTGTATGGNNGCCCTNTGCCGCTACGAAAACGTGGATCCCCCGGNTTCCTACCCCCTGAGAGGCGCCCTCCATCCTGCCCTGCTCACCCATTGGCGGGTGC-AGGTCNTTC-TGCTGAA--CCGGCTGGGG-------G-A--GCC-GACC-GTTGGGCGTACCGGCGACTNTGGG-AAGGGGCCAGGATCCAA-GGACGGCCCCTTCGGTNCT---CCAGTCGGC-TGGACGATGGC---GAGACAGG-------GAGACCCC-CACCAGCCAGAGGAA-CCCGGACCGTCCCCACCTCCCCCGCCGAGAG-ACCCTGTTCCCTCCCGGACTCCCTCGCCCGTGGTCCCTGTTCCGGAGGTCTCGGCTTTTCCGGATT----------GGGCCCCGATGCCCCTGGAGGACGTCGACGCGG--AGCCGCCCCTAAGGGCATC---CCCGCCGGC------CTGG-AGTGG---------GGCGGGGGTGTCGG--AGTACCCGCCTGAGCCCGGATC-C-CTTCG-ACG---CCTG---GTGNATGTG--C------GCGGAGT-GGTAAGAGG
Reference ( gi|1 ) : ACTAGGAGCACTTCACTCGGGGAAGCCCACGTCAACGTGGATCCAGCAGCGCGTCCCT--------TTGAAGGTTGCACCATCCGGACCCGTAAGCTGAGGGATCAT-GCGCACCTCCACCCGGTGTTCCGGCGGAGTGTCCCCTCTGTTCCGGAGGCGTGTCGCCTCCGGATGAGGGTGATCTGCTGGATGGCAGACCAACTCCTGGGCCCCAGCAGGACCGTAGCGGA-TGCGGTGGACCCGGCCTTGGTCTTATCCGACCCGCA-CGCCCCCCTGCCAAGACATCTGGTCGAGGA----ATGGACGCCTTGTGCTACCACGAGAACGTCGACACCCCGGCCTCCTACCCCCTGAGAGGCGCCCTCCATTCTGCTCTGCTCACCCATTGGCGGGTGC-AGATCTTTC-TACTGAA--CCGGCTGGGG-------GGA--GCC-GACC-GTTGGGCCTATCGGCGACTCTGGG-AAGTGGCCCTGATCCAA-GGACGGCCCCTTCGGTCCTT--CCAGTCGGCGTGGACGATGGC---GAGGCAAG-------GAAACCCC-CACCAGCCAGAGGAA-CATGGATCGTCCCCACCTCCCCCGCCGAGAG-ACCCTGTCCCCTCCCGGACTCATTCGCCCGTGGTCCCTGTTCTGGAAGNNNNNNNNNNNNNNNNNNNNNNNNNGGAGGGGTCTGTTGGGTCTGGAGGCCGTGGATGGGGATATTTACTTTCAGGAGCGTCGAGGATGCCAGC------CTGG-AGTGG-CGT----TGGCGGTAGTGCTCG--TGTACCCG-------CCGGATC-C-CTCCGAACG---CCTG---GTGGGTGTA--T------GCGGAGTGGGTAGGGGG
gi|3 : AGGAACCCTCTACTCGGGAA------CGTCAACGTGGACCCCGGAGCGCGTCCCTGTGCCCTTTTGAAGGATGCCAAATACGGACCCGCAAGCTGTGGGA-CATTGCGCACCTCCACCCGGTATTCCGACTGAGTGTCCCCTCTGTTCCGGAGGCGTGTCGCCTCCGGATGAGGGTGCTCTGTTGGTTGGCAGACCAGCTCCTGGGCCCCAACAGAACCGTGGCGGA-TGCGGTGAACCCGGCCTTGGTGTTTTCTGACCCAAA-CGCCCCCCTGCCCAGACACCAGATCGAGGAG---ATGGACGCCCTATGCTGCTATGAAAACGTCGACCCCCCGGCCTCCTAGCCCCTGAGAGGTGCCCTCCATCCTGCCCTACTCACCCATTGGCGGGTGC-AGGTCTTTC-TCCTGAA--CCGGCTGGGGGTGGGGTGGAGTGCC-GACC-GTTGGGCCTATCGGCGGCTGTGGG-AGG-GGCCCGGATCCAA-GGACGACCCCTCCGATTATT--CCAGTCAGCATGGACAATAGC---TAGGCAGG-------GAGACCCC-CACCAGGCAGTGGAA-CGAGGACCGTCTCCACCTCCCCCGCCGTGAG-ACCCTGTTCCC------------TCGCTCGTGGTCCCTGTTCCGGAGG
gi|16 : cgCGCCTCCGGATGAGGGTGCTCTGTTGGTTGACAGACCAACTCCTGGGTCCCAACAGAACCGCGGCGctcggct
gi|12 : CGGAGTGTGGCAGATCCCGCCCATATTTT-TCCAGATCGTAGTGCACCACTTCCGGAGCATTT---TAAGGAGTGTATGGCAGCCCTCTGCCACTTCGAGAATGTGGATCCTCCGAATCCCTACCCCCTGAGAGGCGCCCTCCATCCTGCCCTGCTCATCCATTAGCGGGTGCAAGATCACT--TACTG
gi|5 : TGTGCCACCATGAAAACGTGGATCCCCTGGTTTCTTACCCTTTGAGAGGTGCCCTCCATCCTGCCATGCTCACCCATTGGCGGATGC-AGGTGTATC-TGCTGAA--CTGGCTGGGG-------GCA--GCC-GACC-GTTGGGCGTACCGCCGACTATGGG-AAGGAGCCATGATTCAG-GGACGGCTCATTCGGTCCT------GTCGG------CGATGTCCCGGAGACAGG-------G--ACCCC-AACCTTCCAGAGGAA-CCCGGAGCATC-------CCCCCGACAAGAG-ATCCTGTCCCCTCCCCGACTCCCTCGTCCGCGGTCCCTGTTCCGGAGG
gi|8 : cCCCATTGACGGGTGC-AGGTTGTTCATGTTGAAAACCGGCTGGGG---------A--GCCAGACCCGTTGGGTG-ACCGGAGACTTTGGGGAAGGGGTCAGGATCAAACGGACGGCCCCTTCGGTACTGAACCAAGTGGCCTGGACGATGGC---GAGACAGGTATCCATGAAACCCCGCAC-AGCCAGAGGAAACCTG-ATCGTC---ACC-CCTCCACCGAAAGGACCATGTCCCCTCCCGGACTC--TCGCCAGTGGTCACTGTTCCGGAAGctcggttt
gi|15 : GACCGTCCCCACCTCCCCCGCCGAGA---CCCTGTTCCCTCCCGGACTCTCTCGCCCGTGGTCCCTGTTCCGGAGGgctcggctg
gi|2 : -ACCCTGTTTCCCTCCGGACTCCCTCGCTCGTGGTCCCTGTTCCGGAGGTCTCGGCTTTTCCGGATT----------GGGCCCCGATGCCCCTGGAGGACGTCGACGCGG--AGCCGCCCCTAAGGGCATC---CCCGCCGGCCACATGCTGGAAGTG----------GGCGGGGGTGTTGG--AGTACCCGCCTGAGCCCGGATCGCGCTTCG-ACGGCCCCTGGGTGTGAATGTGGCC------GCGGAGT-GGTAAGAGGctcggcttc
gi|7 : GC------CTGG-AGTGGGCGGAGGGTGTTGGGAGTACCCGCCTGAAAGCC-------CCGGATC-C-CTTCGAACGC--CCTG---GTGTATGTG--CCA----GCGAAGTGGtcctacgctccggaggatccgaccgcccaggacaaccacccggactgcccctttggactttccctatttgtaagacgggcgcttgcgccttgtcccccttaattgtttttctgggggcttcggcccagccggtgtttttgttgcaggttttgccggcgcccccgttcctttctcggagaagacgggggagtgtagtgttttggggggcgagtcgttccataagaatgactcgcccaacgattcgcgtgacgtaagatggcgcgggattttgcacgggctgtgcgagggaagtcccgcactcagagtctacctgtagatacaagaaaacgtgtgactagagacgtcctggaccgaagattacgaggtgagcccccctcaggggaaaccacgaactttattagtataacattgtgatattattaacaacaaatact
gi|13 : gagggaatccccccgaccaacaat------CTGG-AGTGG----------GCGGGGGTGTTGG--AGTACCCGCCTGAGCCCGGATC-C-CTTCG-ACG---CCT----CTGGGTGTA--TGTGGCCGCGGAGT-GGTAAGAGGtaaagaggtctaccgctccggaaggactgaaaccccaagacaaccagactcggaccaccgaccttggactttcccttattgtagacggcgcttgcgacctgttctcccttttgttttttctgtgcgggctgtcggctctcagggccggtgttttgtttgcaaggtttgggccgcgcc
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|4 ): GCAGGGTTGGCCGGCGCAGACCAGCACCCCGGCTTATTGGAGAAACGGGGGGTGTAGTGTTTGGGGGGGCGATTCGTTCCTAGAATGACTCGCCCACCATTCGCGTGGAACGTAAGATGTGGCGCGGATTATTGCAGCGGCTGTGCAAGAGTCGCCTGCACTTTACGGTTCTAACACCGTTGACAAGAATAACCGATAGACTGCGAGACACCTCCCAAATCCGACGAAGATTATGAGTGAGCCACCGTCAGGGAAGAAACCACGAACTTATTTTATGCTACATTTAGATCTAGATAATAAATCAACAAATACTACAAT
Unaligned ( gi|6 ): TTTGTTGCAGGTTTGGGCCGGCGCAGACCGGCAACCCCTTCCTTTTCGGAGAAGAACGGGGGGGGGGAGTGTAGTGTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACCCCGCACTTGGAGACTACCGGCTGAAGGCATCAGACGTGCAGAATCCACCCATACCATCGAGATGACCATGTGGTAAGCCAACCTCGAGTGGACCCGCGGTATATATTGTAATAGTATCTGAATAAATA
Unaligned ( gi|9 ): GGGCGAGTCCGGTTCTAGAATGACTCGCCCACATTCGAGTGACGTAATATGGCGCGGATTTGGCACGGGCAAAATTCCCGCACTTCTTGTCTAACCCGTGGATGAGAAGAAGACCAAGTGCTCTAGACCAACTTCAAGTAGAAGAGTATCTGAAGGTGAGCCCCCCTCAGGGGAAACCACGGACTATAATAAGTACTTATATATGTCTATTAACCAATGAACA
Unaligned ( gi|10 ): GGGCGAGTCCGGTTCTAGAATGACTCGCCCACATTCGAGTGACGTAATATGGCGCGGATTTGGCACGGGCAAAATTCCCGCACTTCTTGTCTAACCCGTGGATGAGAAGAAGACCAAGTGCTCTAGACCAACTTCAAGTAGAAGAGTATCTGAAGGTGAGCCCCCCTCAGGGGAAACCACGGACTATAATAAGTACTTATATATGTCTATTAACCAATGAACA
Unaligned ( gi|11 ): AGTGTTTGGGGGCTAGAATGACTTGCCCACCGTTCGTGTGACGTAATTTGGCGCGGGGTTTTGCACACGTATTGTGCAAAATCCCACACTTGGAGACTACCCGCTGAAGGCATCAGACGTGCAGAATCCACTCATACCAGAGAGACGACCATGTGGTGAGACCCCCTCGAGGGACCTGCGGTATA
Unaligned ( gi|14 ): CGTGACTCGCCCATCATTCGAGTGACGTAATCTGGCGAGGGATTTTGCACAGCCTGTGCAAAATCCCGCACTTCTAGACCACCGGCGAGAGAGTCAAGACGG
Unaligned ( gi|17 ): CCCCCCCCTTCGCGGAACTCCCCTCGCTCGTGGTCCCCTGTCCGGGAGGCTTCGGCCTTTCCGCCC
Unaligned ( gi|18 ): GGGGAAGCCTACTTTATTAGTATTAACATTGTGATAATAATGCAACAAATACTACA
Alignments
lowQualScore : 555555 33333333 2 1 2 1 1 111 3333 11 1 44444444444444 1 1 11 1 1 222222222 22 111 33333333 1 1 1 8888888888 22 1111111 666666666666666666666666 1 222222 1 11 1111 1 1 2 222 2222222 33333 1 1
lowQualScore : 2 777777 2 2 44444444 4 888 3 4 0 5 3 0 0 3 0 1 222 4 11 77 2 1 1 1 77 0 0 666 5555 22 1 2 2 1 8 1 8 1 33 0 33333333333333 0 0 55 1 33 55 0 0 1 444444444 22 777 55555555 0 2 22 1 3 5 6 6 5 3 5 5 9 7777777777 2 4 55 3 2 2 77 2 9999999 777777777777777777777777 0 666666 2 0 66 2 7777 0 0 0 777 5555555 1 55555 0 0
lowQualScore : . ...... . . ........ . ... . . . . . . . . . . ... . .. .. . . . . .. . . ... .... .. . . . . . . . . .. . .............. . . .. . .. .. . . . ......... .. ... ........ . . .. . . . . . . . . . . .......... . . .. . . . .. . ....... ........................ . ...... . . .. . .... . . . ... ....... . ..... . .
lowQualScore : 5 555555 5 5 00000000 0 555 0 0 0 5 0 7 7 3 7 0 777 0 77 77 0 0 0 0 33 7 7 333 7777 00 0 0 5 0 0 0 0 4 88 0 55555555555555 0 0 88 0 22 55 0 0 0 222222222 55 555 00000000 0 5 88 4 2 6 7 7 7 0 7 7 0 5555555555 5 0 00 0 5 5 55 5 0000000 555555555555555555555555 0 222222 5 0 00 5 8888 0 0 0 555 0000000 0 22222 0 0
consensus : NNNAGGAGCNCTCCACTCGGGGAAGCCCACGTCAACGTGGACCCNGNAGCGCGTCCCTGTGCCCTTTTGAAGGNTGCNNNATNCGGACCCGCAAGCTGNGGGATCATTGCGCACCTCCACCCGGTGTTCCGGCNGAGTGTCCCCTCTGTTCCGGAGGCGTGTCGCCTCCGGATGAGGGTGCTCTGTTGGTTGGCAGACCAACTCCTGGGCCCCAACAGAACCGCGGCGGA-TGCGGCGGACCCGGCCTTGGT-TTTTCCGACCCGNAGCGCCCCCCTGCCGAGACATC-GGTCGAGGAG---ATGGACGCCCTGTGCCACCACGAGAACGTNGACCCCCCGGCCTCCTACCCCCTGAGAGGCGCCCTCCATCCTGCCCTGCTCACCCATTGGCGGGTGC-AGGTCTTTC-TGCTGAA--CCGGCT-GGG--------GG-A--GCC-GACC-GTTGGGCGTACCGGCGACTNTGGG-AAGGGGCCNNGATCCAA-GGACGGCCCCTTCGG-TNC-T---CCA-GTCGGCGTGGACGATGGC---GAGGCAGG-------GAGACCCC-CACCAGCCAGAGGAACNCGGACCGTCCCCACCTCCCCCGCCGAGAG-ACCCTGTCCCCTCCCGGA-CTCCC-TCGCCCGTGGT-CCCTGTTCCGGAGG-CTCGGCTTTTCCGGATT-------GGAGGGNCCCGNTGNNCCTGGAGGNCGTNGACGNGGATANCCGCCCCCAAGGGCATC---CCCGCCG---------GC------C------TGG-AGTGG----GGCGG-GGGTGTT-GGAGTACCCGCCTGAG---CCCGGATC-C-CTTCGAACG---CCT---G---GTGNATGTGGCC--GCGGAGT-GGT-AAGAGG
Reference ( family-4965 ) : NNNAGGAACCCTCTACTCGGGAA------CGTCAACGTGGACCCCGGAGCGCGTCCCTGTGCCCTTTTGAAGGATGCCAAATACGGACCCGCAAGCTGTGGGA-CATTGCGCACCTCCACCCGGTATTCCGACTGAGTGTCCCCTCTGTTCCGGAGGCGTGTCGCCTCCGGATGAGGGTGCTCTGTTGGTTGGCAGACCAGCTCCTGGGCCCCAACAGAACCGCGGCGGAGTGCGGCGGACCCNGCCCNNGTNTTTTCCGGNCCGNAGCGCNCCNCTNCCCGGGCACCNGATCGAGGAGTGTATGGNNGCCCTNTGCCGCTACGAAAACGTGGATCCCCCGGNTTCCTACCCCCTGAGAGGCGCCCTCCATCCTGCCCTGCTCACCCATTGGCGGGTGC-AGGTCNTTC-TGCTGAA--CCGGCT-GGG--------GG-A--GCC-GACC-GTTGGGCGTACCGGCGACTNTGGG-AAGGGGCCAGGATCCAA-GGACGGCCCCTTCGG-TNC-T---CCA-GTCGGC-TGGACGATGGC---GAGACAGG-------GAGACCCC-CACCAGCCAGAGGAACCCGGACCGTCCCCACCTCCCCCGCCGAGAG-ACCCTGTTCCCTCCCGGA-CTCCC-TCGCCCGTGGT-CCCTGTTCCGGAGGTCTCGGCTTTTCCGGATT----------GGGCCCCGATGCCCCTGGAGGACGTCGACGCGG--AGCCGCCCCTAAGGGCATC---CCCGCCG---------GC------C------TGG-AGTGG----GGCGG-GGGTGTC-GGAGTACCCGCCTGAG---CCCGGATC-C-CTTCG-ACG---CCT---G---GTGNATGTG--C--GCGGAGT-GGT-AAGAGG
gi|1 : AGGAGCACTTCACTCGGGGAAGCCCACGTCAACGTGGATCCAGCAGCGCGTCCCT--------TTGAAGGTTGCACCATCCGGACCCGTAAGCTGAGGGATCAT-GCGCACCTCCACCCGGTGTTCCGGCGGAGTGTCCCCTCTGTTCCGGAGGCGTGTCGCCTCCGGATGAGGGTGATCTGCTGGATGGCAGACCAACTCCTGGGCCCCAGCAGGACCGTAGCGGA-TGCGGTGGACCCGGCCTTGGTCTTATCCGACCCGCA-CGCCCCCCTGCCAAGACATCTGGTCGAGGA----ATGGACGCCTTGTGCTACCACGAGAACGTCGACACCCCGGCCTCCTACCCCCTGAGAGGCGCCCTCCATTCTGCTCTGCTCACCCATTGGCGGGTGC-AGATCTTTC-TACTGAA--CCGGCTGGGG--------GG-A--GCC-GACC-GTTGGGCCTATCGGCGACTCTGGG-AAGTGGCCCTGATCCAA-GGACGGCCCCTTCGG-TCCTT---CCA-GTCGGCGTGGACGATGGC---GAGGCAAG-------GAAACCCC-CACCAGCCAGAGGAACATGGATCGTCCCCACCTCCCCCGCCGAGAG-ACCCTGTCCCCTCCCGGA-CTCAT-TCGCCCGTGGT-CCCTGTTCTGGAAGNNNNNNNNNNNNNNNNNNNNNNNNNGGAGGGGTCTGTTGGGTCTGGAGGCCGTGGATGGGGATATTTACTTTCAGGAGCGTCGAGGATGCCA---------GC------C------TGG-AGTGGCGTTGGCGG-TAGTGCT-CGTGTACCCG----------CCGGATC-C-CTCCGAACG---CCT---G---GTGGGTGTA--T--GCGGAGTGGGT-AGGGGG
gi|12 : actCGGAGTGTGGCAGATCCCGCCCATAT-TTTTCCAGATCGTAGTGCACCACTTCCGGAGCATT---TTAAGGAGTGTATGGCAGCCCTCTGCCACTTCGAGAATGTGGATCCTCCGAATCCCTACCCCCTGAGAGGCGCCCTCCATCCTGCCCTGCTCATCCATTAGCGGGTGCAAGATCACT--TACTG
gi|13 : GGACATC---CCC-CCG---------GC------CACATGCTGG-AGTGG----G-CGG-GGGTGTT-GGAGTACCCGCCTGAG---CCCGGATC-C-CTTCG-ACG---CCTCTGG---GTGTATGTGGCC--GCGGAGT-GGT-AAGAGG
gi|15 : gGACCGTCCCCACCTCCCCCGCCGAGA---CCCTGTTCCCTCCCGGA-CTCTC-TCGCCCGTGGT-CCCTGTTCCGGAGG-CTCGGCTTtcctaccgctccggaggactgacccctaggacaaccagactcggaccact
gi|16 : CGCCTCCGGATGAGGGTGCTCTGTTGGTTGACAGACCAACTCCTGGGTCCCAACAGAACCGCGGCGc
gi|17 : CCTTCGCGGAACTCCCCTCGCTCGTGGTCCCCTGTCCGGGAGGCTTCGGCCTTTCCG
gi|2 : cccccc-ACCCTGTTTCCCTCCGGA-CTCCC-TCGCTCGTGGT-CCCTGTTCCGGAGGTCTCGGCTTTTCCGGATT----------GGGCCCCGATGCCCCTGGAGGACGTCGACGCGG--AGCCGCCCCTAAGGGCATC---CCCGCCG---------GCCACATGC------TGGAAGT-G----GGCGG-GGGTGTT-GGAGTACCCGCCTGAG---CCCGGATCGCGCTTCG-ACGGCCCCT---GGGTGTGAATGTGGCC--GCGGAGT-GGT-AAGAGGccc
gi|3 : AGGAACCCTCTACTCGGGAA------CGTCAACGTGGACCCCGGAGCGCGTCCCTGTGCCCTTTTGAAGGATGCCAAATACGGACCCGCAAGCTGTGGGA-CATTGCGCACCTCCACCCGGTATTCCGACTGAGTGTCCCCTCTGTTCCGGAGGCGTGTCGCCTCCGGATGAGGGTGCTCTGTTGGTTGGCAGACCAGCTCCTGGGCCCCAACAGAACCGTGGCGGA-TGCGGTGAACCCGGCCTTGGTGTTTTCTGACCC-AAACGCCCCCCTGCCCAGACACCAGATCGAGGAG---ATGGACGCCCTATGCTGCTATGAAAACGTCGACCCCCCGGCCTCCTAGCCCCTGAGAGGTGCCCTCCATCCTGCCCTACTCACCCATTGGCGGGTGC-AGGTCTTTC-TCCTGAA--CCGGCT-GGGGGTGGGGTGG-AGTGCC-GACC-GTTGGGCCTATCGGCGGCTGTGGG--AGGGGCCCGGATCCAA-GGACGACCCCTCCGATTAT-T---CCA-GTCAGCATGGACAATAGC---TAGGCAGG-------GAGACCCC-CACCAGGCAGTGGAACGAGGACCGTCTCCACCTCCCCCGCCGTGAG-ACCCTGT-------------TCCC-TCGCTCGTGGT-CCCTGTTCCGGAGG-CTCGGCTtcctacgctccggaggatccgaccgcccaggacaaccacccggactgcccctttggactttccctatttgtaagacgggcgcttgcgccttgtcccccttaattgtttttctgggggcttcggcccagccggtgtttttgttgcaggttttgccggcgcccccgttcctttctcggagaagacgggggagtgtagtgttttggggggcgagtcgttccataagaatgactcgcccaacgattcgcgtgacgtaagatggcgcgggattttgcacgggctgtgcgagggaagtcccgcactcagagtctacctgtagatacaagaaaacgtgtgactagagacgtcctggaccgaagattacgaggtgagcccccctcaggggaaaccacgaactttattagtataacattgtgatattattaacaacaaatact
gi|5 : cgCTGTGCCACCATGAAAACGTGGATCCCCTGGTTTCTTACCCTTTGAGAGGTGCCCTCCATCCTGCCATGCTCACCCATTGGCGGATGC-AGGTGTATC-TGCTGAA--CTGGCT-GGG--------GGCA--GCC-GACC-GTTGGGCGTACCGCCGACTATGGG-AAGGAGCCATGATTCAG-GGACGGCTCATTCGG-TCC-T-------GTCGG------CGATGTCCCGGAGACAGG---------GACCCC-AACCTTCCAGAGGAACCCGGAGCATC-------CCCCCGACAAGAG-ATCCTGTCCCCTCCCCGA-CTCCC-TCGTCCGCGGT-CCCTGTTCCGGAGG-CTCGGTTT
gi|7 : AGGGAATC---CCC-CCGACCAACAATGC------C------TGG-AGT-G----GGCGGAGGGTGTTGGGAGTACCCGCCTGAAAGCCCCGGATC-C-CTTCGAACGC--CCT---G---GTGTATGTG--CCAGCGAAGT-GGTAAAGAGG
gi|8 : gCCCATTGACGGGTGC-AGGTTGTTCATGTTGAAAACCGGCT-GGG--------G--A--GCCAGACCCGTTGGGTG-ACCGGAGACTTTGGGGAAGGGGTCAGGATCAAACGGACGGCCCCTTCGG-TAC-TGAACCAAGTGGCC-TGGACGATGGC---GAGACAGGTATCCATGAAACCCCGCAC-AGCCAGAGGAAACCTGATCGTC---ACC-CCTCCACCGAAAGGACCATGTCCCCTCCCGGA-CTC---TCGCCAGTGGT-CACTGTTCCGGAAGGCTCGGCTtctaccgctccggaaggactgaaaccccaagacaaccagactcggaccaccgaccttggactttcccttattgtagacggcgcttgcgacctgttctcccttttgttttttctgtgcgggctgtcggctctcagggccggtgttttgtttgcaaggtttgggccgcgcc
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): GCAGGGTTGGCCGGCGCAGACCAGCACCCCGGCTTATTGGAGAAACGGGGGGTGTAGTGTTTGGGGGGGCGATTCGTTCCTAGAATGACTCGCCCACCATTCGCGTGGAACGTAAGATGTGGCGCGGATTATTGCAGCGGCTGTGCAAGAGTCGCCTGCACTTTACGGTTCTAACACCGTTGACAAGAATAACCGATAGACTGCGAGACACCTCCCAAATCCGACGAAGATTATGAGTGAGCCACCGTCAGGGAAGAAACCACGAACTTATTTTATGCTACATTTAGATCTAGATAATAAATCAACAAATACTACAAT
Unaligned ( gi|6 ): TTTGTTGCAGGTTTGGGCCGGCGCAGACCGGCAACCCCTTCCTTTTCGGAGAAGAACGGGGGGGGGGAGTGTAGTGTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACCCCGCACTTGGAGACTACCGGCTGAAGGCATCAGACGTGCAGAATCCACCCATACCATCGAGATGACCATGTGGTAAGCCAACCTCGAGTGGACCCGCGGTATATATTGTAATAGTATCTGAATAAATA
Unaligned ( gi|9 ): GGGCGAGTCCGGTTCTAGAATGACTCGCCCACATTCGAGTGACGTAATATGGCGCGGATTTGGCACGGGCAAAATTCCCGCACTTCTTGTCTAACCCGTGGATGAGAAGAAGACCAAGTGCTCTAGACCAACTTCAAGTAGAAGAGTATCTGAAGGTGAGCCCCCCTCAGGGGAAACCACGGACTATAATAAGTACTTATATATGTCTATTAACCAATGAACA
Unaligned ( gi|10 ): GGGCGAGTCCGGTTCTAGAATGACTCGCCCACATTCGAGTGACGTAATATGGCGCGGATTTGGCACGGGCAAAATTCCCGCACTTCTTGTCTAACCCGTGGATGAGAAGAAGACCAAGTGCTCTAGACCAACTTCAAGTAGAAGAGTATCTGAAGGTGAGCCCCCCTCAGGGGAAACCACGGACTATAATAAGTACTTATATATGTCTATTAACCAATGAACA
Unaligned ( gi|11 ): AGTGTTTGGGGGCTAGAATGACTTGCCCACCGTTCGTGTGACGTAATTTGGCGCGGGGTTTTGCACACGTATTGTGCAAAATCCCACACTTGGAGACTACCCGCTGAAGGCATCAGACGTGCAGAATCCACTCATACCAGAGAGACGACCATGTGGTGAGACCCCCTCGAGGGACCTGCGGTATA
Unaligned ( gi|14 ): CGTGACTCGCCCATCATTCGAGTGACGTAATCTGGCGAGGGATTTTGCACAGCCTGTGCAAAATCCCGCACTTCTAGACCACCGGCGAGAGAGTCAAGACGG
Unaligned ( gi|18 ): GGGGAAGCCTACTTTATTAGTATTAACATTGTGATAATAATGCAACAAATACTACA
Alignments
lowQualScore : 222222 33333333 1 1 1 1 1 1 333 3333 1 11 1 44444444444444 1 1 11 1 1 222222 111 33333333 1 1 22222222 222 11 1111111 666666666666666666666666 1 222222 1 1 1111 1 1 1 222 2222222 1 1
lowQualScore : 1 888888 1 1 44444444 1 333 1 1 5 5 1 0 3 0 3 3 77 2 3 777 0000 0 1 0 0 0 0 33 0 33333333333333 0 0 55 1 33 22 0 0 1 111111 99 777 55555555 0 2 11 1 3 5 6 1 5 5 5 5 66666666 5 000 1 1 22 1 1 1 88 1 9999999 777777777777777777777777 0 2 666666 0 0 2 7777 0 0 5 777 5555555 1 8 0 0 0
lowQualScore : . ...... . . ........ . ... . . . . . . . . . . .. . . ... .... . . . . . . .. . .............. . . .. . .. .. . . . ...... .. ... ........ . . .. . . . . . . . . . ........ . ... . . .. . . . .. . ....... ........................ . . ...... . . . .... . . . ... ....... . . . . .
lowQualScore : 0 555555 0 0 00000000 0 000 0 0 5 5 0 7 3 7 3 3 77 0 7 000 0000 2 0 2 2 0 2 88 0 55555555555555 0 0 88 0 22 00 0 0 0 000000 00 555 00000000 0 5 22 4 2 6 7 7 7 7 7 7 44444444 7 555 0 0 00 0 0 0 55 0 0000000 555555555555555555555555 0 5 222222 0 0 5 8888 0 0 5 555 0000000 0 8 2 0 0
consensus : NNNAGGAGCNCTCCACTCGGGGAAGCCCACGTCAACGTGGACCCNGNAGCGCGTCCCTGTGCCCTTTTGAAGGNTGCNNNATNCGGACCCGCAAGCTGNGGGATCATTGCGCACCTCCACCCGGTGTTCCGGCNGAGTGTCCCCTCTGTTCCGGAGGCGTGTCGCCTCCGGATGAGGGTGCTCTGTTGGTTGGCAGACCAACTCCTGGGCCCCAACAGAACCGCGGCGGA-TGCGGCGGACCCGGCCTTGGT-TTT-TCCGACCCGNAGCGCCCCCCTGCCGAGACATC-GGTCGAGGAG---ATGGACGCCCTGTGCCACCACGAGAACGTNGACCCCCCGGCCTCCTACCCCCTGAGAGGCGCCCTCCATCCTGCCCTGCTCACCCATTGGCGGGTGCAGGTCTTTC-TGCTGAA--CCGGCT-GGG--------GG-A--GCC-GACC-GTTGGGCGTACCGGCGACTNTGGG-AAGGGGCCNNGATCCAA-GGACGGCCCCTTCGG-TNC-T---CCAGTCGGCGTGGACGATGGC---GAGGCAGG-------GAGACCCC-CACCAGCCAGAGGAACNCGGACCGTCCCCACCTCCCCCGCCGAGAG-ACCCTGTCCCCTCCCGGA-CTCCC-TCGCCCGTGGT-CCCTGTTCCGG-AGG--------C-TCGGCTTTTCCGGATTGGAGGGNCCCGNTGNNCCTGGAGGNCGTNGACGNGGATANCCGCCCCCAAGGGCATC---CCCGCCG---------GC------C------TGG-AGTGG----GGCGG-GGGTGTTGG-AGTACCCGCCTGAG---CCCGGATC-C-CTTCGAACG---CCT---G---GTGNATGTGGCCGCGGAGT-GGT-AAGAGG
Reference ( family-4965 ) : NNNAGGAGCNCTCCACTCGGGGAAGCCCACGTCAACGTGGACCCNGNAGCGCGTCCCTGTGCCCTTTTGAAGGNTGCNNNATNCGGACCCGCAAGCTGNGGGATCATTGCGCACCTCCACCCGGTGTTCCGGCNGAGTGTCCCCTCTGTTCCGGAGGCGTGTCGCCTCCGGATGAGGGTGCTCTGTTGGTTGGCAGACCAACTCCTGGGCCCCAACAGAACCGCGGCGGA-TGCGGCGGACCCGGCCTTGGT-TTT-TCCGACCCGNAGCGCCCCCCTGCCGAGACATC-GGTCGAGGAG---ATGGACGCCCTGTGCCACCACGAGAACGTNGACCCCCCGGCCTCCTACCCCCTGAGAGGCGCCCTCCATCCTGCCCTGCTCACCCATTGGCGGGTGCAGGTCTTTC-TGCTGAA--CCGGCT-GGG--------GG-A--GCC-GACC-GTTGGGCGTACCGGCGACTNTGGG-AAGGGGCCNNGATCCAA-GGACGGCCCCTTCGG-TNC-T---CCAGTCGGCGTGGACGATGGC---GAGGCAGG-------GAGACCCC-CACCAGCCAGAGGAACNCGGACCGTCCCCACCTCCCCCGCCGAGAG-ACCCTGTCCCCTCCCGGA-CTCCC-TCGCCCGTGGT-CCCTGTTCCGG-AGG--------C-TCGGCTTTTCCGGATTGGAGGGNCCCGNTGNNCCTGGAGGNCGTNGACGNGGATANCCGCCCCCAAGGGCATC---CCCGCCG---------GC------C------TGG-AGTGG----GGCGG-GGGTGTTGG-AGTACCCGCCTGAG---CCCGGATC-C-CTTCGAACG---CCT---G---GTGNATGTGGCCGCGGAGT-GGT-AAGAGG
gi|1 : AGGAGCACTTCACTCGGGGAAGCCCACGTCAACGTGGATCCAGCAGCGCGTCCCT--------TTGAAGGTTGCACCATCCGGACCCGTAAGCTGAGGGATCAT-GCGCACCTCCACCCGGTGTTCCGGCGGAGTGTCCCCTCTGTTCCGGAGGCGTGTCGCCTCCGGATGAGGGTGATCTGCTGGATGGCAGACCAACTCCTGGGCCCCAGCAGGACCGTAGCGGA-TGCGGTGGACCCGGCCTTGGT-CTTATCCGACCCGCA-CGCCCCCCTGCCAAGACATCTGGTCGAGGA----ATGGACGCCTTGTGCTACCACGAGAACGTCGACACCCCGGCCTCCTACCCCCTGAGAGGCGCCCTCCATTCTGCTCTGCTCACCCATTGGCGGGTGCAGATCTTTC-TACTGAA--CCGGCTGGGG--------GG-A--GCC-GACC-GTTGGGCCTATCGGCGACTCTGGG-AAGTGGCCCTGATCCAA-GGACGGCCCCTTCGG-TCCTT---CCAGTCGGCGTGGACGATGGC---GAGGCAAG-------GAAACCCC-CACCAGCCAGAGGAACATGGATCGTCCCCACCTCCCCCGCCGAGAG-ACCCTGTCCCCTCCCGGA-CTCAT-TCGCCCGTGGT-CCCTGTTCTGG-AAGNNNNNNNNN-NNNNNNNNNNNNNNNNGGAGGGGTCTGTTGGGTCTGGAGGCCGTGGATGGGGATATTTACTTTCAGGAGCGTCGAGGATGCCA---------GC------C------TGG-AGTGGCGTTGGCGG-TAGTGCTCG-TGTACCCG----------CCGGATC-C-CTCCGAACG---CCT---G---GTGGGTGTA--TGCGGAGTGGGT-AGGGGG
gi|12 : actCGGAGTGTGGCAGATCCCGCCCATAT-TTT-TCCAGATCGTAGTGCACCACTTCCGGAGCATT---TTAAGGAGTGTATGGCAGCCCTCTGCCACTTCGAGAATGTGGATCCTCCGAATCCCTACCCCCTGAGAGGCGCCCTCCATCCTGCCCTGCTCATCCATTAGCGGGTGCAAG
gi|13 : GGACATC---CCC-CCG---------GC------CACATGCTGG-AGTGG----G-CGG-GGGTGTTGG-AGTACCCGCCTGAG---CCCGGATC-C-CTTCG-ACG---CCTCTGG---GTGTATGTGGCCGCGGAGT-GGT-AAGAGGatcacttactg
gi|15 : gGACCGTCCCCACCTCCCCCGCCGAGA---CCCTGTTCCCTCCCGGA-CTCTC-TCGCCCGTGGT-CCCTGTTCCGG-AGG--------C-TCGGCTTtcctaccgctccggaggactgacccctaggacaaccagactcggaccact
gi|16 : CGCCTCCGGATGAGGGTGCTCTGTTGGTTGACAGACCAACTCCTGGGTCCCAACAGAACCGCGGCGc
gi|17 : CCCTTCGCGGAACTCCCCTCGCTCGTGGTCCCCTGTCCGGG-AGG--------CTTCGGCCTTTCCG
gi|2 : ccccc-ACCCTGTTTCCCTCCGGA-CTCCC-TCGCTCGTGGT-CCCTGTTCCGG-AGGT-------C-TCGGCTTTTCCGGATT---GGGCCCCGATGCCCCTGGAGGACGTCGACGCGG--AGCCGCCCCTAAGGGCATC---CCCGCCG---------GCCACATGC------TGGAAGT-G----GGCGG-GGGTGTTGG-AGTACCCGCCTGAG---CCCGGATCGCGCTTCG-ACGGCCCCT---GGGTGTGAATGTGGCCGCGGAGT-GGT-AAGAGGccc
gi|3 : AGGAACCCTCTACTCGGGAA------CGTCAACGTGGACCCCGGAGCGCGTCCCTGTGCCCTTTTGAAGGATGCCAAATACGGACCCGCAAGCTGTGGGA-CATTGCGCACCTCCACCCGGTATTCCGACTGAGTGTCCCCTCTGTTCCGGAGGCGTGTCGCCTCCGGATGAGGGTGCTCTGTTGGTTGGCAGACCAGCTCCTGGGCCCCAACAGAACCGTGGCGGA-TGCGGTGAACCCGGCCTTGGTGTTT-TCTGACCC-AAACGCCCCCCTGCCCAGACACCAGATCGAGGAG---ATGGACGCCCTATGCTGCTATGAAAACGTCGACCCCCCGGCCTCCTAGCCCCTGAGAGGTGCCCTCCATCCTGCCCTACTCACCCATTGGCGGGTGCAGGTCTTTC-TCCTGAA--CCGGCT-GGGGGTGGGGTGG-AGTGCC-GACC-GTTGGGCCTATCGGCGGCTGTGGG--AGGGGCCCGGATCCAA-GGACGACCCCTCCGATTAT-T---CCAGTCAGCATGGACAATAGC---TAGGCAGG-------GAGACCCC-CACCAGGCAGTGGAACGAGGACCGTCTCCACCTCCCCCGCCGTGAG-ACCCTGT-------------TCCC-TCGCTCGTGGT-CCCTGTTCCGG-AGG--------C-TCGGCTtcctacgctccggaggatccgaccgcccaggacaaccacccggactgcccctttggactttccctatttgtaagacgggcgcttgcgccttgtcccccttaattgtttttctgggggcttcggcccagccggtgtttttgttgcaggttttgccggcgcccccgttcctttctcggagaagacgggggagtgtagtgttttggggggcgagtcgttccataagaatgactcgcccaacgattcgcgtgacgtaagatggcgcgggattttgcacgggctgtgcgagggaagtcccgcactcagagtctacctgtagatacaagaaaacgtgtgactagagacgtcctggaccgaagattacgaggtgagcccccctcaggggaaaccacgaactttattagtataacattgtgatattattaacaacaaatact
gi|5 : cgCTGTGCCACCATGAAAACGTGGATCCCCTGGTTTCTTACCCTTTGAGAGGTGCCCTCCATCCTGCCATGCTCACCCATTGGCGGATGCAGGTGTATC-TGCTGAA--CTGGCT-GGG--------GGCA--GCC-GACC-GTTGGGCGTACCGCCGACTATGGG-AAGGAGCCATGATTCAG-GGACGGCTCATTCGG-TCC-T------GTCGG------CGATGTCCCGGAGACAGG---------GACCCC-AACCTTCCAGAGGAACCCGGAGCATC-------CCCCCGACAAGAG-ATCCTGTCCCCTCCCCGA-CTCCC-TCGTCCGCGGT-CCCTGTTCCGG-AGG--------C-TCGGTTT
gi|7 : AGGGAATC---CCC-CCGACCAACAATGC------C------TGG-AGTGG----G-CGGAGGGTGTTGGGAGTACCCGCCTGAAAGCCCCGGATC-C-CTTCGAACGC--CCT---G---GTGTATGTGCCAGCGAAGT-GGTAAAGAGG
gi|8 : gCCCATTGACGGGTGCAGGTTGTTCATGTTGAAAACCGGCT-GGG--------G--A--GCCAGACCCGTTGGGTG-ACCGGAGACTTTGGGGAAGGGGTCAGGATCAAACGGACGGCCCCTTCGG-TAC-TGAACCAAGTGGCCTGGACGATGGC---GAGACAGGTATCCATGAAACCCCGCAC-AGCCAGAGGAAACCTGATCGTC---ACC-CCTCCACCGAAAGGACCATGTCCCCTCCCGGA-CT--C-TCGCCAGTGGT-CACTGTTCCGGAAGG--------C-TCGGCTtctaccgctccggaaggactgaaaccccaagacaaccagactcggaccaccgaccttggactttcccttattgtagacggcgcttgcgacctgttctcccttttgttttttctgtgcgggctgtcggctctcagggccggtgttttgtttgcaaggtttgggccgcgcc
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): GCAGGGTTGGCCGGCGCAGACCAGCACCCCGGCTTATTGGAGAAACGGGGGGTGTAGTGTTTGGGGGGGCGATTCGTTCCTAGAATGACTCGCCCACCATTCGCGTGGAACGTAAGATGTGGCGCGGATTATTGCAGCGGCTGTGCAAGAGTCGCCTGCACTTTACGGTTCTAACACCGTTGACAAGAATAACCGATAGACTGCGAGACACCTCCCAAATCCGACGAAGATTATGAGTGAGCCACCGTCAGGGAAGAAACCACGAACTTATTTTATGCTACATTTAGATCTAGATAATAAATCAACAAATACTACAAT
Unaligned ( gi|6 ): TTTGTTGCAGGTTTGGGCCGGCGCAGACCGGCAACCCCTTCCTTTTCGGAGAAGAACGGGGGGGGGGAGTGTAGTGTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACCCCGCACTTGGAGACTACCGGCTGAAGGCATCAGACGTGCAGAATCCACCCATACCATCGAGATGACCATGTGGTAAGCCAACCTCGAGTGGACCCGCGGTATATATTGTAATAGTATCTGAATAAATA
Unaligned ( gi|9 ): GGGCGAGTCCGGTTCTAGAATGACTCGCCCACATTCGAGTGACGTAATATGGCGCGGATTTGGCACGGGCAAAATTCCCGCACTTCTTGTCTAACCCGTGGATGAGAAGAAGACCAAGTGCTCTAGACCAACTTCAAGTAGAAGAGTATCTGAAGGTGAGCCCCCCTCAGGGGAAACCACGGACTATAATAAGTACTTATATATGTCTATTAACCAATGAACA
Unaligned ( gi|10 ): GGGCGAGTCCGGTTCTAGAATGACTCGCCCACATTCGAGTGACGTAATATGGCGCGGATTTGGCACGGGCAAAATTCCCGCACTTCTTGTCTAACCCGTGGATGAGAAGAAGACCAAGTGCTCTAGACCAACTTCAAGTAGAAGAGTATCTGAAGGTGAGCCCCCCTCAGGGGAAACCACGGACTATAATAAGTACTTATATATGTCTATTAACCAATGAACA
Unaligned ( gi|11 ): AGTGTTTGGGGGCTAGAATGACTTGCCCACCGTTCGTGTGACGTAATTTGGCGCGGGGTTTTGCACACGTATTGTGCAAAATCCCACACTTGGAGACTACCCGCTGAAGGCATCAGACGTGCAGAATCCACTCATACCAGAGAGACGACCATGTGGTGAGACCCCCTCGAGGGACCTGCGGTATA
Unaligned ( gi|14 ): CGTGACTCGCCCATCATTCGAGTGACGTAATCTGGCGAGGGATTTTGCACAGCCTGTGCAAAATCCCGCACTTCTAGACCACCGGCGAGAGAGTCAAGACGG
Unaligned ( gi|18 ): GGGGAAGCCTACTTTATTAGTATTAACATTGTGATAATAATGCAACAAATACTACA
Alignments
lowQualScore : 222222 33333333 1 1 1 1 1 1 333 3333 1 11 1 44444444444444 1 1 11 1 1 222222 111 33333333 1 1 22222222 222 11 1111111 666666666666666666666666 1 222222 1 1 1111 1 1 1 222 2222222 1 1
lowQualScore : 1 888888 1 1 44444444 1 333 1 1 5 5 1 0 3 0 3 3 77 2 3 777 0000 0 1 0 0 0 0 33 0 33333333333333 0 0 55 1 33 22 0 0 1 111111 99 777 55555555 0 2 11 1 3 5 6 1 5 5 5 5 66666666 5 000 1 1 22 1 1 1 88 1 9999999 777777777777777777777777 0 2 666666 0 0 2 7777 0 0 5 777 5555555 1 8 0 0 0
lowQualScore : . ...... . . ........ . ... . . . . . . . . . . .. . . ... .... . . . . . . .. . .............. . . .. . .. .. . . . ...... .. ... ........ . . .. . . . . . . . . . ........ . ... . . .. . . . .. . ....... ........................ . . ...... . . . .... . . . ... ....... . . . . .
lowQualScore : 0 555555 0 0 00000000 0 000 0 0 5 5 0 7 3 7 3 3 77 0 7 000 0000 2 0 2 2 0 2 88 0 55555555555555 0 0 88 0 22 00 0 0 0 000000 00 555 00000000 0 5 22 4 2 6 7 7 7 7 7 7 44444444 7 555 0 0 00 0 0 0 55 0 0000000 555555555555555555555555 0 5 222222 0 0 5 8888 0 0 5 555 0000000 0 8 2 0 0
consensus : NNNAGGAGCNCTCCACTCGGGGAAGCCCACGTCAACGTGGACCCNGNAGCGCGTCCCTGTGCCCTTTTGAAGGNTGCNNNATNCGGACCCGCAAGCTGNGGGATCATTGCGCACCTCCACCCGGTGTTCCGGCNGAGTGTCCCCTCTGTTCCGGAGGCGTGTCGCCTCCGGATGAGGGTGCTCTGTTGGTTGGCAGACCAACTCCTGGGCCCCAACAGAACCGCGGCGGA-TGCGGCGGACCCGGCCTTGGT-TTT-TCCGACCCGNAGCGCCCCCCTGCCGAGACATC-GGTCGAGGAG---ATGGACGCCCTGTGCCACCACGAGAACGTNGACCCCCCGGCCTCCTACCCCCTGAGAGGCGCCCTCCATCCTGCCCTGCTCACCCATTGGCGGGTGCAGGTCTTTC-TGCTGAA--CCGGCT-GGG--------GG-A--GCC-GACC-GTTGGGCGTACCGGCGACTNTGGG-AAGGGGCCNNGATCCAA-GGACGGCCCCTTCGG-TNC-T---CCAGTCGGCGTGGACGATGGC---GAGGCAGG-------GAGACCCC-CACCAGCCAGAGGAACNCGGACCGTCCCCACCTCCCCCGCCGAGAG-ACCCTGTCCCCTCCCGGA-CTCCC-TCGCCCGTGGT-CCCTGTTCCGG-AGG--------C-TCGGCTTTTCCGGATTGGAGGGNCCCGNTGNNCCTGGAGGNCGTNGACGNGGATANCCGCCCCCAAGGGCATC---CCCGCCG---------GC------C------TGG-AGTGG----GGCGG-GGGTGTTGG-AGTACCCGCCTGAG---CCCGGATC-C-CTTCGAACG---CCT---G---GTGNATGTGGCCGCGGAGT-GGT-AAGAGG
Reference ( family-4965 ) : NNNAGGAGCNCTCCACTCGGGGAAGCCCACGTCAACGTGGACCCNGNAGCGCGTCCCTGTGCCCTTTTGAAGGNTGCNNNATNCGGACCCGCAAGCTGNGGGATCATTGCGCACCTCCACCCGGTGTTCCGGCNGAGTGTCCCCTCTGTTCCGGAGGCGTGTCGCCTCCGGATGAGGGTGCTCTGTTGGTTGGCAGACCAACTCCTGGGCCCCAACAGAACCGCGGCGGA-TGCGGCGGACCCGGCCTTGGT-TTT-TCCGACCCGNAGCGCCCCCCTGCCGAGACATC-GGTCGAGGAG---ATGGACGCCCTGTGCCACCACGAGAACGTNGACCCCCCGGCCTCCTACCCCCTGAGAGGCGCCCTCCATCCTGCCCTGCTCACCCATTGGCGGGTGCAGGTCTTTC-TGCTGAA--CCGGCT-GGG--------GG-A--GCC-GACC-GTTGGGCGTACCGGCGACTNTGGG-AAGGGGCCNNGATCCAA-GGACGGCCCCTTCGG-TNC-T---CCAGTCGGCGTGGACGATGGC---GAGGCAGG-------GAGACCCC-CACCAGCCAGAGGAACNCGGACCGTCCCCACCTCCCCCGCCGAGAG-ACCCTGTCCCCTCCCGGA-CTCCC-TCGCCCGTGGT-CCCTGTTCCGG-AGG--------C-TCGGCTTTTCCGGATTGGAGGGNCCCGNTGNNCCTGGAGGNCGTNGACGNGGATANCCGCCCCCAAGGGCATC---CCCGCCG---------GC------C------TGG-AGTGG----GGCGG-GGGTGTTGG-AGTACCCGCCTGAG---CCCGGATC-C-CTTCGAACG---CCT---G---GTGNATGTGGCCGCGGAGT-GGT-AAGAGG
gi|1 : AGGAGCACTTCACTCGGGGAAGCCCACGTCAACGTGGATCCAGCAGCGCGTCCCT--------TTGAAGGTTGCACCATCCGGACCCGTAAGCTGAGGGATCAT-GCGCACCTCCACCCGGTGTTCCGGCGGAGTGTCCCCTCTGTTCCGGAGGCGTGTCGCCTCCGGATGAGGGTGATCTGCTGGATGGCAGACCAACTCCTGGGCCCCAGCAGGACCGTAGCGGA-TGCGGTGGACCCGGCCTTGGT-CTTATCCGACCCGCA-CGCCCCCCTGCCAAGACATCTGGTCGAGGA----ATGGACGCCTTGTGCTACCACGAGAACGTCGACACCCCGGCCTCCTACCCCCTGAGAGGCGCCCTCCATTCTGCTCTGCTCACCCATTGGCGGGTGCAGATCTTTC-TACTGAA--CCGGCTGGGG--------GG-A--GCC-GACC-GTTGGGCCTATCGGCGACTCTGGG-AAGTGGCCCTGATCCAA-GGACGGCCCCTTCGG-TCCTT---CCAGTCGGCGTGGACGATGGC---GAGGCAAG-------GAAACCCC-CACCAGCCAGAGGAACATGGATCGTCCCCACCTCCCCCGCCGAGAG-ACCCTGTCCCCTCCCGGA-CTCAT-TCGCCCGTGGT-CCCTGTTCTGG-AAGNNNNNNNNN-NNNNNNNNNNNNNNNNGGAGGGGTCTGTTGGGTCTGGAGGCCGTGGATGGGGATATTTACTTTCAGGAGCGTCGAGGATGCCA---------GC------C------TGG-AGTGGCGTTGGCGG-TAGTGCTCG-TGTACCCG----------CCGGATC-C-CTCCGAACG---CCT---G---GTGGGTGTA--TGCGGAGTGGGT-AGGGGG
gi|12 : actCGGAGTGTGGCAGATCCCGCCCATAT-TTT-TCCAGATCGTAGTGCACCACTTCCGGAGCATT---TTAAGGAGTGTATGGCAGCCCTCTGCCACTTCGAGAATGTGGATCCTCCGAATCCCTACCCCCTGAGAGGCGCCCTCCATCCTGCCCTGCTCATCCATTAGCGGGTGCAAG
gi|13 : GGACATC---CCC-CCG---------GC------CACATGCTGG-AGTGG----G-CGG-GGGTGTTGG-AGTACCCGCCTGAG---CCCGGATC-C-CTTCG-ACG---CCTCTGG---GTGTATGTGGCCGCGGAGT-GGT-AAGAGGatcacttactg
gi|15 : gGACCGTCCCCACCTCCCCCGCCGAGA---CCCTGTTCCCTCCCGGA-CTCTC-TCGCCCGTGGT-CCCTGTTCCGG-AGG--------C-TCGGCTTtcctaccgctccggaggactgacccctaggacaaccagactcggaccact
gi|16 : CGCCTCCGGATGAGGGTGCTCTGTTGGTTGACAGACCAACTCCTGGGTCCCAACAGAACCGCGGCGc
gi|17 : CCCTTCGCGGAACTCCCCTCGCTCGTGGTCCCCTGTCCGGG-AGG--------CTTCGGCCTTTCCG
gi|2 : ccccc-ACCCTGTTTCCCTCCGGA-CTCCC-TCGCTCGTGGT-CCCTGTTCCGG-AGGT-------C-TCGGCTTTTCCGGATT---GGGCCCCGATGCCCCTGGAGGACGTCGACGCGG--AGCCGCCCCTAAGGGCATC---CCCGCCG---------GCCACATGC------TGGAAGT-G----GGCGG-GGGTGTTGG-AGTACCCGCCTGAG---CCCGGATCGCGCTTCG-ACGGCCCCT---GGGTGTGAATGTGGCCGCGGAGT-GGT-AAGAGGccc
gi|3 : AGGAACCCTCTACTCGGGAA------CGTCAACGTGGACCCCGGAGCGCGTCCCTGTGCCCTTTTGAAGGATGCCAAATACGGACCCGCAAGCTGTGGGA-CATTGCGCACCTCCACCCGGTATTCCGACTGAGTGTCCCCTCTGTTCCGGAGGCGTGTCGCCTCCGGATGAGGGTGCTCTGTTGGTTGGCAGACCAGCTCCTGGGCCCCAACAGAACCGTGGCGGA-TGCGGTGAACCCGGCCTTGGTGTTT-TCTGACCC-AAACGCCCCCCTGCCCAGACACCAGATCGAGGAG---ATGGACGCCCTATGCTGCTATGAAAACGTCGACCCCCCGGCCTCCTAGCCCCTGAGAGGTGCCCTCCATCCTGCCCTACTCACCCATTGGCGGGTGCAGGTCTTTC-TCCTGAA--CCGGCT-GGGGGTGGGGTGG-AGTGCC-GACC-GTTGGGCCTATCGGCGGCTGTGGG--AGGGGCCCGGATCCAA-GGACGACCCCTCCGATTAT-T---CCAGTCAGCATGGACAATAGC---TAGGCAGG-------GAGACCCC-CACCAGGCAGTGGAACGAGGACCGTCTCCACCTCCCCCGCCGTGAG-ACCCTGT-------------TCCC-TCGCTCGTGGT-CCCTGTTCCGG-AGG--------C-TCGGCTtcctacgctccggaggatccgaccgcccaggacaaccacccggactgcccctttggactttccctatttgtaagacgggcgcttgcgccttgtcccccttaattgtttttctgggggcttcggcccagccggtgtttttgttgcaggttttgccggcgcccccgttcctttctcggagaagacgggggagtgtagtgttttggggggcgagtcgttccataagaatgactcgcccaacgattcgcgtgacgtaagatggcgcgggattttgcacgggctgtgcgagggaagtcccgcactcagagtctacctgtagatacaagaaaacgtgtgactagagacgtcctggaccgaagattacgaggtgagcccccctcaggggaaaccacgaactttattagtataacattgtgatattattaacaacaaatact
gi|5 : cgCTGTGCCACCATGAAAACGTGGATCCCCTGGTTTCTTACCCTTTGAGAGGTGCCCTCCATCCTGCCATGCTCACCCATTGGCGGATGCAGGTGTATC-TGCTGAA--CTGGCT-GGG--------GGCA--GCC-GACC-GTTGGGCGTACCGCCGACTATGGG-AAGGAGCCATGATTCAG-GGACGGCTCATTCGG-TCC-T------GTCGG------CGATGTCCCGGAGACAGG---------GACCCC-AACCTTCCAGAGGAACCCGGAGCATC-------CCCCCGACAAGAG-ATCCTGTCCCCTCCCCGA-CTCCC-TCGTCCGCGGT-CCCTGTTCCGG-AGG--------C-TCGGTTT
gi|7 : AGGGAATC---CCC-CCGACCAACAATGC------C------TGG-AGTGG----G-CGGAGGGTGTTGGGAGTACCCGCCTGAAAGCCCCGGATC-C-CTTCGAACGC--CCT---G---GTGTATGTGCCAGCGAAGT-GGTAAAGAGG
gi|8 : gCCCATTGACGGGTGCAGGTTGTTCATGTTGAAAACCGGCT-GGG--------G--A--GCCAGACCCGTTGGGTG-ACCGGAGACTTTGGGGAAGGGGTCAGGATCAAACGGACGGCCCCTTCGG-TAC-TGAACCAAGTGGCCTGGACGATGGC---GAGACAGGTATCCATGAAACCCCGCAC-AGCCAGAGGAAACCTGATCGTC---ACC-CCTCCACCGAAAGGACCATGTCCCCTCCCGGA-CT--C-TCGCCAGTGGT-CACTGTTCCGGAAGG--------C-TCGGCTtctaccgctccggaaggactgaaaccccaagacaaccagactcggaccaccgaccttggactttcccttattgtagacggcgcttgcgacctgttctcccttttgttttttctgtgcgggctgtcggctctcagggccggtgttttgtttgcaaggtttgggccgcgcc
blockSeqs : C . C G GTGCCCTT A CAA A T . T T G G . GT G G AGA GTGT G A AA . GGTGGGGTGGAGT A C CT G GA CG C T A TGAAC CA CCG TATCCATG G C GA C C T G T A C C A T T . C A CC A C C . G CCCG ACCAACAATGCC A G GG A G C AAGC G G A GCC CTGG T G . A
blockSeqs : . . . A A C . G C . . . GGCA . . GT A A AT . . C TC CC . G . C CC C T T . C . . . . . . CCC GCCACATGC . G G . . C G . . . C GGGT A G . .
blockSeqs : G . . . GA . . G T . AG . . A T . . . . . CC G . . . T . . . . . . CCC GCCACATGC . . G . . C G . . . . G T C . .
blockSeqs : T . . . C . . . . . .
blockSeqs : . C . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : ********
originalCons : NNNAGGAGCNCTCCACTCGGGGAAGCCCACGTCAACGTGGACCCNGNAGCGCGTCCCTGTGCCCTTTTGAAGGNTGCNNNATNCGGACCCGCAAGCTGNGGGATCATTGCGCACCTCCACCCGGTGTTCCGGCNGAGTGTCCCCTCTGTTCCGGAGGCGTGTCGCCTCCGGATGAGGGTGCTCTGTTGGTTGGCAGACCAACTCCTGGGCCCCAACAGAACCGCGGCGGA-TGCGGCGGACCCGGCCTTGGT-TTT-TCCGACCCGNAGCGCCCCCCTGCCGAGACATC-GGTCGAGGAG---ATGGACGCCCTGTGCCACCACGAGAACGTNGACCCCCCGGCCTCCTACCCCCTGAGAGGCGCCCTCCATCCTGCCCTGCTCACCCATTGGCGGGTGCAGGTCTTTC-TGCTGAA--CCGGCT-GGG--------GG-A--GCC-GACC-GTTGGGCGTACCGGCGACTNTGGG-AAGGGGCCNNGATCCAA-GGACGGCCCCTTCGG-TNC-T---CCAGTCGGCGTGGACGATGGC---GAGGCAGG-------GAGACCCC-CACCAGCCAGAGGAACNCGGACCGTCCCCACCTCCCCCGCCGAGAG-ACCCTGTCCCCTCCCGGA-CTCCC-TCGCCCGTGGT-CCCTGTTCCGG-AGG--------C-TCGGCTTTTCCGGATTGGAGGGNCCCGNTGNNCCTGGAGGNCGTNGACGNGGATANCCGCCCCCAAGGGCATC---CCCGCCG---------GC------C------TGG-AGTGG----GGCGG-GGGTGTTGG-AGTACCCGCCTGAG---CCCGGATC-C-CTTCGAACG---CCT---G---GTGNATGTGGCCGCGGAGT-GGT-AAGAGG
finalCons : NNNAGGAGCNCTCCACTCGGGGAAGCCCACGTCAACGTGGACCCNGNAGCGCGTCCCTGTGCCCTTTTGAAGGNTGCNNNATNCGGACCCGCAAGCTGNGGGATCATTGCGCACCTCCACCCGGTGTTCCGGCNGAGTGTCCCCTCTGTTCCGGAGGCGTGTCGCCTCCGGATGAGGGTGCTCTGTTGGTTGGCAGACCAACTCCTGGGCCCCAACAGAACCGCGGCGGA-TGCGGCGGACCCGGCCTTGGT-TTT-TCCGACCCGNAGCGCCCCCCTGCCGAGACATC-GGTCGAGGAG---ATGGACGCCCTGTGCCACCACGAGAACGTNGACCCCCCGGCCTCCTACCCCCTGAGAGGCGCCCTCCATCCTGCCCTGCTCACCCATTGGCGGGTGCAGGTCTTTC-TGCTGAA--CCGGCT-GGG--------GG-A--GCC-GACC-GTTGGGCGTACCGGCGACTNTGGG-AAGGGGCCNNGATCCAA-GGACGGCCCCTTCGG-TNC-T---CCAGTCGGCGTGGACGATGGC---GAGGCAGG-------GAGACCCC-CACCAGCCAGAGGAACNCGGACCGTCCCCACCTCCCCCGCCGAGAG-ACCCTGTCCCCTCCCGGA-CTCCC-TCGCCCGTGGT-CCCTGTTCCGG-AGG--------C-TCGGCTTTTCCGGATTGGAGGGNCCCGNTGNNCCTGGAGGNCGTNGACGNGGATANCCGCCCCCAAGGGCATC---CCCGCCG---------GC------C------TGG-AGTGG----GGCGG-GGGTGTTGG-AGTACCCGCCTGAG---CCCGGATC-C-CTTCGAACG---CCT---G---GTGNATGTGGCCGCGGAGT-GGT-AAGAGG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): GCAGGGTTGGCCGGCGCAGACCAGCACCCCGGCTTATTGGAGAAACGGGGGGTGTAGTGTTTGGGGGGGCGATTCGTTCCTAGAATGACTCGCCCACCATTCGCGTGGAACGTAAGATGTGGCGCGGATTATTGCAGCGGCTGTGCAAGAGTCGCCTGCACTTTACGGTTCTAACACCGTTGACAAGAATAACCGATAGACTGCGAGACACCTCCCAAATCCGACGAAGATTATGAGTGAGCCACCGTCAGGGAAGAAACCACGAACTTATTTTATGCTACATTTAGATCTAGATAATAAATCAACAAATACTACAAT
Unaligned ( gi|6 ): TTTGTTGCAGGTTTGGGCCGGCGCAGACCGGCAACCCCTTCCTTTTCGGAGAAGAACGGGGGGGGGGAGTGTAGTGTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACCCCGCACTTGGAGACTACCGGCTGAAGGCATCAGACGTGCAGAATCCACCCATACCATCGAGATGACCATGTGGTAAGCCAACCTCGAGTGGACCCGCGGTATATATTGTAATAGTATCTGAATAAATA
Unaligned ( gi|9 ): GGGCGAGTCCGGTTCTAGAATGACTCGCCCACATTCGAGTGACGTAATATGGCGCGGATTTGGCACGGGCAAAATTCCCGCACTTCTTGTCTAACCCGTGGATGAGAAGAAGACCAAGTGCTCTAGACCAACTTCAAGTAGAAGAGTATCTGAAGGTGAGCCCCCCTCAGGGGAAACCACGGACTATAATAAGTACTTATATATGTCTATTAACCAATGAACA
Unaligned ( gi|10 ): GGGCGAGTCCGGTTCTAGAATGACTCGCCCACATTCGAGTGACGTAATATGGCGCGGATTTGGCACGGGCAAAATTCCCGCACTTCTTGTCTAACCCGTGGATGAGAAGAAGACCAAGTGCTCTAGACCAACTTCAAGTAGAAGAGTATCTGAAGGTGAGCCCCCCTCAGGGGAAACCACGGACTATAATAAGTACTTATATATGTCTATTAACCAATGAACA
Unaligned ( gi|11 ): AGTGTTTGGGGGCTAGAATGACTTGCCCACCGTTCGTGTGACGTAATTTGGCGCGGGGTTTTGCACACGTATTGTGCAAAATCCCACACTTGGAGACTACCCGCTGAAGGCATCAGACGTGCAGAATCCACTCATACCAGAGAGACGACCATGTGGTGAGACCCCCTCGAGGGACCTGCGGTATA
Unaligned ( gi|14 ): CGTGACTCGCCCATCATTCGAGTGACGTAATCTGGCGAGGGATTTTGCACAGCCTGTGCAAAATCCCGCACTTCTAGACCACCGGCGAGAGAGTCAAGACGG
Unaligned ( gi|18 ): GGGGAAGCCTACTTTATTAGTATTAACATTGTGATAATAATGCAACAAATACTACA
Alignments
lowQualScore : 222222 33333333 1 1 1 1 1 1 333 3333 1 11 1 44444444444444 1 1 11 1 1 222222 111 33333333 1 1 22222222 222 11 1111111 666666666666666666666666 1 222222 1 1 1111 1 1 1 222 2222222 1 1
lowQualScore : 1 888888 1 1 44444444 1 333 1 1 5 5 1 0 3 0 3 3 77 2 3 777 0000 0 1 0 0 0 0 33 0 33333333333333 0 0 55 1 33 22 0 0 1 111111 99 777 55555555 0 2 11 1 3 5 6 1 5 5 5 5 66666666 5 000 1 1 22 1 1 1 88 1 9999999 777777777777777777777777 0 2 666666 0 0 2 7777 0 0 5 777 5555555 1 8 0 0 0
lowQualScore : . ...... . . ........ . ... . . . . . . . . . . .. . . ... .... . . . . . . .. . .............. . . .. . .. .. . . . ...... .. ... ........ . . .. . . . . . . . . . ........ . ... . . .. . . . .. . ....... ........................ . . ...... . . . .... . . . ... ....... . . . . .
lowQualScore : 0 555555 0 0 00000000 0 000 0 0 5 5 0 7 3 7 3 3 77 0 7 000 0000 2 0 2 2 0 2 88 0 55555555555555 0 0 88 0 22 00 0 0 0 000000 00 555 00000000 0 5 22 4 2 6 7 7 7 7 7 7 44444444 7 555 0 0 00 0 0 0 55 0 0000000 555555555555555555555555 0 5 222222 0 0 5 8888 0 0 5 555 0000000 0 8 2 0 0
consensus : NNNAGGAGCNCTCCACTCGGGGAAGCCCACGTCAACGTGGACCCNGNAGCGCGTCCCTGTGCCCTTTTGAAGGNTGCNNNATNCGGACCCGCAAGCTGNGGGATCATTGCGCACCTCCACCCGGTGTTCCGGCNGAGTGTCCCCTCTGTTCCGGAGGCGTGTCGCCTCCGGATGAGGGTGCTCTGTTGGTTGGCAGACCAACTCCTGGGCCCCAACAGAACCGCGGCGGA-TGCGGCGGACCCGGCCTTGGT-TTT-TCCGACCCGNAGCGCCCCCCTGCCGAGACATC-GGTCGAGGAG---ATGGACGCCCTGTGCCACCACGAGAACGTNGACCCCCCGGCCTCCTACCCCCTGAGAGGCGCCCTCCATCCTGCCCTGCTCACCCATTGGCGGGTGCAGGTCTTTC-TGCTGAA--CCGGCT-GGG--------GG-A--GCC-GACC-GTTGGGCGTACCGGCGACTNTGGG-AAGGGGCCNNGATCCAA-GGACGGCCCCTTCGG-TNC-T---CCAGTCGGCGTGGACGATGGC---GAGGCAGG-------GAGACCCC-CACCAGCCAGAGGAACNCGGACCGTCCCCACCTCCCCCGCCGAGAG-ACCCTGTCCCCTCCCGGA-CTCCC-TCGCCCGTGGT-CCCTGTTCCGG-AGG--------C-TCGGCTTTTCCGGATTGGAGGGNCCCGNTGNNCCTGGAGGNCGTNGACGNGGATANCCGCCCCCAAGGGCATC---CCCGCCG---------GC------C------TGG-AGTGG----GGCGG-GGGTGTTGG-AGTACCCGCCTGAG---CCCGGATC-C-CTTCGAACG---CCT---G---GTGNATGTGGCCGCGGAGT-GGT-AAGAGG
Reference ( family-4965 ) : NNNAGGAGCNCTCCACTCGGGGAAGCCCACGTCAACGTGGACCCNGNAGCGCGTCCCTGTGCCCTTTTGAAGGNTGCNNNATNCGGACCCGCAAGCTGNGGGATCATTGCGCACCTCCACCCGGTGTTCCGGCNGAGTGTCCCCTCTGTTCCGGAGGCGTGTCGCCTCCGGATGAGGGTGCTCTGTTGGTTGGCAGACCAACTCCTGGGCCCCAACAGAACCGCGGCGGA-TGCGGCGGACCCGGCCTTGGT-TTT-TCCGACCCGNAGCGCCCCCCTGCCGAGACATC-GGTCGAGGAG---ATGGACGCCCTGTGCCACCACGAGAACGTNGACCCCCCGGCCTCCTACCCCCTGAGAGGCGCCCTCCATCCTGCCCTGCTCACCCATTGGCGGGTGCAGGTCTTTC-TGCTGAA--CCGGCT-GGG--------GG-A--GCC-GACC-GTTGGGCGTACCGGCGACTNTGGG-AAGGGGCCNNGATCCAA-GGACGGCCCCTTCGG-TNC-T---CCAGTCGGCGTGGACGATGGC---GAGGCAGG-------GAGACCCC-CACCAGCCAGAGGAACNCGGACCGTCCCCACCTCCCCCGCCGAGAG-ACCCTGTCCCCTCCCGGA-CTCCC-TCGCCCGTGGT-CCCTGTTCCGG-AGG--------C-TCGGCTTTTCCGGATTGGAGGGNCCCGNTGNNCCTGGAGGNCGTNGACGNGGATANCCGCCCCCAAGGGCATC---CCCGCCG---------GC------C------TGG-AGTGG----GGCGG-GGGTGTTGG-AGTACCCGCCTGAG---CCCGGATC-C-CTTCGAACG---CCT---G---GTGNATGTGGCCGCGGAGT-GGT-AAGAGG
gi|1 : AGGAGCACTTCACTCGGGGAAGCCCACGTCAACGTGGATCCAGCAGCGCGTCCCT--------TTGAAGGTTGCACCATCCGGACCCGTAAGCTGAGGGATCAT-GCGCACCTCCACCCGGTGTTCCGGCGGAGTGTCCCCTCTGTTCCGGAGGCGTGTCGCCTCCGGATGAGGGTGATCTGCTGGATGGCAGACCAACTCCTGGGCCCCAGCAGGACCGTAGCGGA-TGCGGTGGACCCGGCCTTGGT-CTTATCCGACCCGCA-CGCCCCCCTGCCAAGACATCTGGTCGAGGA----ATGGACGCCTTGTGCTACCACGAGAACGTCGACACCCCGGCCTCCTACCCCCTGAGAGGCGCCCTCCATTCTGCTCTGCTCACCCATTGGCGGGTGCAGATCTTTC-TACTGAA--CCGGCTGGGG--------GG-A--GCC-GACC-GTTGGGCCTATCGGCGACTCTGGG-AAGTGGCCCTGATCCAA-GGACGGCCCCTTCGG-TCCTT---CCAGTCGGCGTGGACGATGGC---GAGGCAAG-------GAAACCCC-CACCAGCCAGAGGAACATGGATCGTCCCCACCTCCCCCGCCGAGAG-ACCCTGTCCCCTCCCGGA-CTCAT-TCGCCCGTGGT-CCCTGTTCTGG-AAGNNNNNNNNN-NNNNNNNNNNNNNNNNGGAGGGGTCTGTTGGGTCTGGAGGCCGTGGATGGGGATATTTACTTTCAGGAGCGTCGAGGATGCCA---------GC------C------TGG-AGTGGCGTTGGCGG-TAGTGCTCG-TGTACCCG----------CCGGATC-C-CTCCGAACG---CCT---G---GTGGGTGTA--TGCGGAGTGGGT-AGGGGG
gi|12 : actCGGAGTGTGGCAGATCCCGCCCATAT-TTT-TCCAGATCGTAGTGCACCACTTCCGGAGCATT---TTAAGGAGTGTATGGCAGCCCTCTGCCACTTCGAGAATGTGGATCCTCCGAATCCCTACCCCCTGAGAGGCGCCCTCCATCCTGCCCTGCTCATCCATTAGCGGGTGCAAG
gi|13 : GGACATC---CCC-CCG---------GC------CACATGCTGG-AGTGG----G-CGG-GGGTGTTGG-AGTACCCGCCTGAG---CCCGGATC-C-CTTCG-ACG---CCTCTGG---GTGTATGTGGCCGCGGAGT-GGT-AAGAGGatcacttactg
gi|15 : gGACCGTCCCCACCTCCCCCGCCGAGA---CCCTGTTCCCTCCCGGA-CTCTC-TCGCCCGTGGT-CCCTGTTCCGG-AGG--------C-TCGGCTTtcctaccgctccggaggactgacccctaggacaaccagactcggaccact
gi|16 : CGCCTCCGGATGAGGGTGCTCTGTTGGTTGACAGACCAACTCCTGGGTCCCAACAGAACCGCGGCGc
gi|17 : CCCTTCGCGGAACTCCCCTCGCTCGTGGTCCCCTGTCCGGG-AGG--------CTTCGGCCTTTCCG
gi|2 : ccccc-ACCCTGTTTCCCTCCGGA-CTCCC-TCGCTCGTGGT-CCCTGTTCCGG-AGGT-------C-TCGGCTTTTCCGGATT---GGGCCCCGATGCCCCTGGAGGACGTCGACGCGG--AGCCGCCCCTAAGGGCATC---CCCGCCG---------GCCACATGC------TGGAAGT-G----GGCGG-GGGTGTTGG-AGTACCCGCCTGAG---CCCGGATCGCGCTTCG-ACGGCCCCT---GGGTGTGAATGTGGCCGCGGAGT-GGT-AAGAGGccc
gi|3 : AGGAACCCTCTACTCGGGAA------CGTCAACGTGGACCCCGGAGCGCGTCCCTGTGCCCTTTTGAAGGATGCCAAATACGGACCCGCAAGCTGTGGGA-CATTGCGCACCTCCACCCGGTATTCCGACTGAGTGTCCCCTCTGTTCCGGAGGCGTGTCGCCTCCGGATGAGGGTGCTCTGTTGGTTGGCAGACCAGCTCCTGGGCCCCAACAGAACCGTGGCGGA-TGCGGTGAACCCGGCCTTGGTGTTT-TCTGACCC-AAACGCCCCCCTGCCCAGACACCAGATCGAGGAG---ATGGACGCCCTATGCTGCTATGAAAACGTCGACCCCCCGGCCTCCTAGCCCCTGAGAGGTGCCCTCCATCCTGCCCTACTCACCCATTGGCGGGTGCAGGTCTTTC-TCCTGAA--CCGGCT-GGGGGTGGGGTGG-AGTGCC-GACC-GTTGGGCCTATCGGCGGCTGTGGG--AGGGGCCCGGATCCAA-GGACGACCCCTCCGATTAT-T---CCAGTCAGCATGGACAATAGC---TAGGCAGG-------GAGACCCC-CACCAGGCAGTGGAACGAGGACCGTCTCCACCTCCCCCGCCGTGAG-ACCCTGT-------------TCCC-TCGCTCGTGGT-CCCTGTTCCGG-AGG--------C-TCGGCTtcctacgctccggaggatccgaccgcccaggacaaccacccggactgcccctttggactttccctatttgtaagacgggcgcttgcgccttgtcccccttaattgtttttctgggggcttcggcccagccggtgtttttgttgcaggttttgccggcgcccccgttcctttctcggagaagacgggggagtgtagtgttttggggggcgagtcgttccataagaatgactcgcccaacgattcgcgtgacgtaagatggcgcgggattttgcacgggctgtgcgagggaagtcccgcactcagagtctacctgtagatacaagaaaacgtgtgactagagacgtcctggaccgaagattacgaggtgagcccccctcaggggaaaccacgaactttattagtataacattgtgatattattaacaacaaatact
gi|5 : cgCTGTGCCACCATGAAAACGTGGATCCCCTGGTTTCTTACCCTTTGAGAGGTGCCCTCCATCCTGCCATGCTCACCCATTGGCGGATGCAGGTGTATC-TGCTGAA--CTGGCT-GGG--------GGCA--GCC-GACC-GTTGGGCGTACCGCCGACTATGGG-AAGGAGCCATGATTCAG-GGACGGCTCATTCGG-TCC-T------GTCGG------CGATGTCCCGGAGACAGG---------GACCCC-AACCTTCCAGAGGAACCCGGAGCATC-------CCCCCGACAAGAG-ATCCTGTCCCCTCCCCGA-CTCCC-TCGTCCGCGGT-CCCTGTTCCGG-AGG--------C-TCGGTTT
gi|7 : AGGGAATC---CCC-CCGACCAACAATGC------C------TGG-AGTGG----G-CGGAGGGTGTTGGGAGTACCCGCCTGAAAGCCCCGGATC-C-CTTCGAACGC--CCT---G---GTGTATGTGCCAGCGAAGT-GGTAAAGAGG
gi|8 : gCCCATTGACGGGTGCAGGTTGTTCATGTTGAAAACCGGCT-GGG--------G--A--GCCAGACCCGTTGGGTG-ACCGGAGACTTTGGGGAAGGGGTCAGGATCAAACGGACGGCCCCTTCGG-TAC-TGAACCAAGTGGCCTGGACGATGGC---GAGACAGGTATCCATGAAACCCCGCAC-AGCCAGAGGAAACCTGATCGTC---ACC-CCTCCACCGAAAGGACCATGTCCCCTCCCGGA-CT--C-TCGCCAGTGGT-CACTGTTCCGGAAGG--------C-TCGGCTtctaccgctccggaaggactgaaaccccaagacaaccagactcggaccaccgaccttggactttcccttattgtagacggcgcttgcgacctgttctcccttttgttttttctgtgcgggctgtcggctctcagggccggtgttttgtttgcaaggtttgggccgcgcc
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): GCAGGGTTGGCCGGCGCAGACCAGCACCCCGGCTTATTGGAGAAACGGGGGGTGTAGTGTTTGGGGGGGCGATTCGTTCCTAGAATGACTCGCCCACCATTCGCGTGGAACGTAAGATGTGGCGCGGATTATTGCAGCGGCTGTGCAAGAGTCGCCTGCACTTTACGGTTCTAACACCGTTGACAAGAATAACCGATAGACTGCGAGACACCTCCCAAATCCGACGAAGATTATGAGTGAGCCACCGTCAGGGAAGAAACCACGAACTTATTTTATGCTACATTTAGATCTAGATAATAAATCAACAAATACTACAAT
Unaligned ( gi|6 ): TTTGTTGCAGGTTTGGGCCGGCGCAGACCGGCAACCCCTTCCTTTTCGGAGAAGAACGGGGGGGGGGAGTGTAGTGTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACCCCGCACTTGGAGACTACCGGCTGAAGGCATCAGACGTGCAGAATCCACCCATACCATCGAGATGACCATGTGGTAAGCCAACCTCGAGTGGACCCGCGGTATATATTGTAATAGTATCTGAATAAATA
Unaligned ( gi|9 ): GGGCGAGTCCGGTTCTAGAATGACTCGCCCACATTCGAGTGACGTAATATGGCGCGGATTTGGCACGGGCAAAATTCCCGCACTTCTTGTCTAACCCGTGGATGAGAAGAAGACCAAGTGCTCTAGACCAACTTCAAGTAGAAGAGTATCTGAAGGTGAGCCCCCCTCAGGGGAAACCACGGACTATAATAAGTACTTATATATGTCTATTAACCAATGAACA
Unaligned ( gi|10 ): GGGCGAGTCCGGTTCTAGAATGACTCGCCCACATTCGAGTGACGTAATATGGCGCGGATTTGGCACGGGCAAAATTCCCGCACTTCTTGTCTAACCCGTGGATGAGAAGAAGACCAAGTGCTCTAGACCAACTTCAAGTAGAAGAGTATCTGAAGGTGAGCCCCCCTCAGGGGAAACCACGGACTATAATAAGTACTTATATATGTCTATTAACCAATGAACA
Unaligned ( gi|11 ): AGTGTTTGGGGGCTAGAATGACTTGCCCACCGTTCGTGTGACGTAATTTGGCGCGGGGTTTTGCACACGTATTGTGCAAAATCCCACACTTGGAGACTACCCGCTGAAGGCATCAGACGTGCAGAATCCACTCATACCAGAGAGACGACCATGTGGTGAGACCCCCTCGAGGGACCTGCGGTATA
Unaligned ( gi|14 ): CGTGACTCGCCCATCATTCGAGTGACGTAATCTGGCGAGGGATTTTGCACAGCCTGTGCAAAATCCCGCACTTCTAGACCACCGGCGAGAGAGTCAAGACGG
Unaligned ( gi|18 ): GGGGAAGCCTACTTTATTAGTATTAACATTGTGATAATAATGCAACAAATACTACA