lowQualScore : 1111111111111
lowQualScore : 6666666666666666666666 2222222222222 11 1 11 1 222222 1111 333333333333333333 111 11111 1 111 11111 66666666666666666666666666666666666666666666666666666666666666 1 2222222222222 111111111 11111 1 1 4444444444444 1 44444 2222 4444444444 1 11 2 1 4444444444444 1 222 1
lowQualScore : 1 2222222222222222222222 7 4 6666666666666 55 1 33 3 3 4 66 4 0 1 8 66 777 4 4 3 5 777777 0000 777 666666666666666666 3 111 22222 3 111 6 66666 8 77 55555555555555555555555555555555555555555555555555555555555555 222 3 2 0 66 5 4 66 4 3 3 6666 3 3 4 0000000000000 5 3 888888888 0 1 44444 7 6 1 6 6 1 2 5555555555555 2 9 3 2 0 99999 8 1111 3333333333 7 6 6 88 6 6 3 1111111111111 7 2 999 6
lowQualScore : . ...................... . . ............. .. . .. . . . .. . . . . .. ... . . . . ...... .... ... .................. . ... ..... . ... . ..... . .. .............................................................. ... . . . .. . . .. . . . .... . . . ............. . . ......... . . ..... . . . . . . . ............. . . . . . ..... . .... .......... . . . .. . . . ............. . . ... .
lowQualScore : 0 7777777777777777777777 1 0 2222222222222 55 4 66 6 6 0 33 4 2 9 0 22 000 4 4 1 6 222222 6666 222 999999999999999999 2 777 77777 5 777 7 77777 4 99 66666666666666666666666666666666666666666666666666666666666666 000 5 8 1 99 0 4 11 2 6 6 7777 6 6 0 8888888888888 0 4 333333333 6 9 33333 6 0 0 7 6 8 8 0000000000000 5 2 5 5 0 00000 0 2222 8888888888 0 0 0 33 0 7 3 3333333333333 0 5 555 0
consensus : ACAAAGACAAACAGACATAGAAAC--------------CAG----TACAAGGCATGACACCAC------ACACAGAAAG-CATAAAATAAAC-AA-ACTGC-AAGC-ATGC-ATTAAATAAAATAACTAAAATGATAGG---TTAA-GATAGG-CAGAAAACTAAAA---A--CTAA----A--GCA------------------AATACAAGCACTTG---CTTGGATAT---AATAAAACAAAAAC--T-GAG-----ACAAGGAG--AAGAAATAAG--------GAAG------------A-AA-A-NAA--------AT---GAAAA-N---ACATAGTTAGGTTGATTAGTTGCAAGCTG--GAC-AAC-T--ACAGAGAGGATCCTCCCAGGTC-T-GGA--G-CAGTCTG-CC-AAA-GAGTTT------G------TA-GTTATCCGCTT---GTC---TGATTTCA-----TTTGGCAGGCTGTTCCAGATCCGGGGTGCCTCGTAA-CGGAAAGATTTCAAACCATATCTGGTAGTAT-------TGTTAACCTTTGGTTGAAAAGCTTGCTTTTCTCTCCTGGAATAATAAG--TTTGTTGTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGGTTGTGTAAAATTTTGTATGCTTCCCTGGCGATTA--ATTGGATTCTGTTT-ACATGTAGTAAGTTGGAATTTGNTTTTTTTTTTCAAAANATTTTCTAGAGAAGNCNCAGAATCATCCGTGACA
Reference ( gi|1 ) : ATAAAGACAAACAGACATAGAAAC--------------CAA----TAAAAGGTATGGCACCAC------ACACAAAAAA-CATAAAACGAAC-AA-ACTGC-AAGC-ATGC-ATTAAATAAAATAGCTAAAATCGTAGG---TTAA-GATAGG-CAAAAAACTAGAA---A--CTAA----A--ACA------------------AATACAAGCACTTG---CTTGGATAT---AATAAAACAAAAAC--T-GAG-----ACAATGAG--AAGAAATACG--------GAAG------------A-AA-A-CAA--------AT---GAAAA-A---ACATAGTTAGGTTAATTTGTTACAAGCTG--GAC-AAC-T--ACAGAGGGGATCCTCCCAGGTC-T-GGA--G-CAGTCTG-CC-AAA-GAGTTT------G------TA-GTTATCTGCTT---GTC---TGATTTCA-----TTTAGCAGGCTATTCCAGATCCGGGGTGCCTCATAA-CGGATAGAATTCAAACCATATCTGGTGGTATACGAGTATATTAACCTTTGGTTGAAAAGCTTGCATTTCTCTCCTGGAATAAT--G--TTTGTTGTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGGTAGTGTAGAATTTTGTATGCTTTCCTGGCAATTA--ATTAGATTCTG-TT-ACATGTAGTAAGTTGGAATTTGTTTTATTTTTTCAAAAGATTTTCTAGAGAAGGATCAGAATCATCAGTGACA
gi|3 : ACAAGGGCGAACAGACATAGAAAC---------------AG----TACAAGG-ATAACAATAC------ACAGAAAGAA-----AAATAAAC-AATACTGC-TAACGATCCCATTAAATAAA-TAACTAAAATGATAGG---TTAAAGATAGGTCAGAAAACTAAAA---AAACTAA----ATAGCA------------------AATACAAGCACTTG---CTTAGATAT---GATAAA-CAAAAAC--TTGAG------CAGGAAG--AAGAAATAAG--------GAAG------------A-AA-AATAA--------AT----AAAC-C---ACATAGTTAGGTTGATTAGTTACAAGCTG--GAA-AACAT--ACAGAGAGGATCCTCCCAGGTCCT-GGA--GGCAGTCTGACC-AAA-GAGGTT------G------TAAGTTATCTGCTT---GTC---TGATTTCA-----TGTTGCAAGCTGTTCCAGATCCGGGGTGCCTCGTAA-CGGA
gi|11 : aaaggtaaaaaacaaacaaaaagctgtACAAAGACAAACAGACATAAA-----------------CAG----TACAAGGCATAACA--AT------ACACAGAAAG-CATAAAGTAAAC-AA-ACTGC-AAAC-ATGC-ATT-AATTAAATAACTAAAAAGATAGG---TTAA-GATAGG-CAGAAAACTAAAAG--A--CTAA----A--ACA------------------AATACaa
gi|14 : taaaaaacaaacaaaaagctgtATAAGGACAA-CAGACATAGAAAA--------------CAG----TACA-GGCATAACA--AT------ACGCAGAAAG-CATACAATAAAC-AA-ACTGC-AAAC-ATGC-ATTAAAT-AAATAACTAAAATGTTAGG---TTtaaaa
gi|13 : acaaaggtaaaaaacaacaaaaagctgtACAAGAACAAACAGACATAGAAA---------------CAG----TATAAGGCATAACA-TAT------ACACAGAAAG-CACAAAATAAACAAA-ACTGC-A
gi|18 : aacaaaggtaaaaaacaaaagctgtACAAAGACAAACAGACATTAAAAC---------------AG----TACAAGGCATAACA--AT------ACACAGAAAG-CATAAAATAAAC-AA-Actatatgttttaaaacatttacaggataagaggca
gi|7 : aaaggtaaaaacaaacaaaaagctgtTAAAGACAAACAGACATAAA-----------------CAG----TACAAGGCATAA----AT------ACACAAAAAG-CAATAAATAAAC-AA-ACCGCAAAGC-ATGC--TTAAAT--AATAACTAAAAT-GAAGG---TTAA-GA-AGG-C-AAAAACT--AATTTA--CT-A----A--GTG------------------AGTAC-AGCACTTG---CTTGGAT-------TAAAA-AAAAACAAT-GAG-----ACAAGGAG--AAG-AATAAG--------GAGT------------A-AATA-CAACCCCCCCCCC---TCAAC-C---CCATAGTTAGG-TAATTAGTTACAAGCTG--GAC-AAC-T--ACAGA-GAGAT-CTCCCA-GTC-T-GG------AGTCTG-CC-AAA-GAGac
gi|2 : acaaaggtaaaaaacacaaaaagcatgAGACAAACAGACATAGAAACAGTACAAGACATAACAA----TAAAAGGTATGACACCAC------ACACAAAAAG-CATAAAATAAAC-AA-ACTGT-AAGC-ATGC-ATTAAATAAAATAATTAAAATCATAGG---TTAA-GGTAGG-CAAAAA-CTAAAA---G--CCAAAGCAA--ACACAAGCACTTGGATATAAAAAGACAAACACT-GAGACAAGGAGAAGAAAAGAAAAAAAAAAA--T-AAGGGGAAAAAATGAGGAAAGAAAAAAA--------AAAA------------A-AA-A-AAA--------AGAAAGAAAACA---ACATA-TTAA---AGTTTGTT----------GATTAAC-T--ACAGAGAGGATCCTCCCAGGTC-T-GGA--G-CAGTCTG-CC-AAA-GAGTTT------G------TA-GTCATCTGCTTAATGTC---TGATTTCA-----TTTGGCAGGCTGTTCCAGATCCGGGGTGCCTCATAA-CTGAAAGAATTTAAACCATATCTGGTGG----------TATTAATTTTTGGTTG-AAAGCTTGCATTTCTCTCCTGGAGTGATAAG--TTTGTTGTTATGAAA
gi|20 : AGACAAACAGACATAGAAACAGTACGAGGCATAACAA----TAAAGGGTTTGACACCAC------ACAC
gi|5 : AAACAGACATAGAAA---------------CAG----TACAAGACATA---------------ACAATAAA-TA-------AAC-AA-ACTGC-AAGC-ATGC-ATTAAAT-AAATAGCTAAAATGATAGG---TTAA-GATAGA-CAGAAAACTAAAAT--A--CTAA----A--GCA------------------AATACAAGCACTTG---CTTAGATAT---AATAAAACAAAAAC--T-GAG-----ACAAGGAG--AAGAAATAAGGAATTTAAGAAG------------A-AA-A-AAA--------AA---AAAAA-AACCACATAGTTAGGTTAATTAGTTACAAGCTG--GAC-AAC-T--TCAAAGAGGATCCTCCCAGGTC-T-GG---G-CAGTCTG-CC-AAA-GAGTTT------GTATATATA-GTTATCTGCTT---GTtgactgaaaaaggca
gi|15 : caaaaactgtacaaAACAGACATAGAAAC---------------AG----TACAAGGCATG-----AT------ACACAGAAAG-CGTAAAATAAAC-AA-A-------AC--TGC-ATTAATTAAA-TAACTAAAAAGATAGG---TTAA-GATAGG-CAGAAAACTAAAAG--A--CTAA----A--ACA------------------AATACAAGCA
gi|24 : AACAGACATA-AAACAGTA----------CAAGGCATAAAAGGTATGACACCAC------ACA
gi|4 : AGGCATAAAAA----------------------TAGAAGGTTTGACTCCACTCACAAACACAAAAAAGCATAAAATAAAC-AA-GCTG--AAAC--------TAAATAAAATAACTAAAATCATGGT---CTAA-GATAGA-CAAAAACTTA-AA---G--TTAA----A--GCA------------------AATTCAAGCACTTG-------GATAC---TACAAAA---AAA---T-GAG-----ACAATGAG--AAGAAA---G--------AGAG------------ACAA-A-CAATA------AT---GAAAA-G----CATAGGTAGATTGATTAACTGTAAGCTG--GAC-ATC-T--ACATAGAGGATCCTTCCAGGTC-A-GGA--A-CAGTCTG-CT-AAA-GAGTTT------G------TA-GTTATCCACTT---GCC---TGATTACA-----TTTGCTAGGCGGTTCCAGATCCGGG
gi|19 : acagtgcaAAAGACAAGCCACCAC------TCACAGAAAG-CATAAAATAAAC-AA-ACTGC-AAGC-ATGC-ATTGCATAAAATA-------------G---TTAA-GATATG-CAAAAAa
gi|22 : acAATCATAGGAAATTAA-GATAGG-CAAAAACCTA-AA---G--CTAA----A--GCA------------------AATACAAGCA-------CTTGGATAT---AATAc
gi|17 : TAT---GGTAAAATAAAAAC--T-GAG-----ACAAAGAG--AAAAA-------------GAAA------------A-AA-A-AAAT-------AT---GGAAA-A----CATGGGTTGAT--ATTAGTTGCAAGCTG--GAC-AAC-T--ACAGGGAGGATCTTCCCAGGTC-T-TGAACG-TAG--TG-CC-Ag
gi|6 : agCAAGGAG--AAGAAATAAG--------GAAGAAAGAAGAAAAAA-AA-A-CAA--------AT----AAAC-C---ACATAGTTAGGTTAATTAGTTACAAGCTG--GAC-AAC-T--ACAGAGAGGATCCTCCCAGGTC-T-GGA--G-CAGTCTG-CC-AAA-GAGTTT------G------TA-GTTATCTGCTT---GTC---TGATTTCA-----TTTGGCAGGCTGTTCCAGATCCGGGGTGCCTCGTAA-CGGAATTATTTCAAACCATATCTGGTAG----------TGTTAACCTTTGGTTGAAAAGCTTGCTTTTCTCTCCTGGAATAATAAG--TTTGTTCTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATT
gi|8 : TTGATTGGTGGCA-GTTGAAGGC-AAT-TTCACGGTGAGGATCTTCT-ACGTC-TTGGA--A-CAGTCTA-TCGAAA-GA-TTT------A------AA-AAGA-CTGCTT----TCG--CAAATGCA-----CTAGGGAGACTGTTCAAGAGGCGGGTTTCCTCAAAAGCGAAAAGATTTTAAACCATACCTGGTAGTATt
gi|16 : agaaacaaaaaagacattgacgcttttaggatgttgtataacgataaagcaaaacgcaacataatggataggcgcatgaaaaaatactatagcattataattgtttAC-T--ACAGAGAG-ATC-TCCCAG-TC-T-GGA--G----TCTG-CC-AAA-GAGT
gi|2 : CCCGGATC-T-GGA--A-CAGCCTG-CC-AAA------T------G------AA-ATCAGACATTA---AGCAGATGACTACAAACTCTTTGGCAGACTGCTCCAGACCTGGGgatcacttatttaatattcccctctctttccttggtcggagggtgtttgttgtcagctccatgcacatataaatgagtaggaatttga
gi|6 : agacaaacagacatagaaacagtacaagacataacaataaaaggtatgacaccacacacaaaaagcataaaataaacaaactgtaagcatgcattaaataaaataattaaaatcataggttaaggtaggcaaaaactaaaagccaaagcaaacacaagcacttggatataaaaagacaaacactgagacaaggagaagaaaagaaaaaaaaaaataaggggaaaaaatgaggaaagaaaaaaaaaaaaaaaaaaagaaagaaaacaacatattaaagtttgttgattaactacagagaggatcctCCCGGATC-T-GGA--A-CAGCCTG-CC-AAATGAAATCAGACAAG------CA-GATAACTAC------------AAACTC------TTTGGCAGACTGCTCCAGACCTGGGgtgcctcataactgaaagaatttaaaccatatctggtggtattaatttttggttgaaagcttgcatttctctcctggagtgataagtttgttgttatgaaa
gi|10 : caaggagaagaaataaggaagaaagaagaaaaaaaaacaaataaaccacatagttaggttaattagttacaagctggacaactacagagaggatcctCAGGCTGTTCCAGATCCGGGGTGCCTCGTAC-CGAAGAGATTTCAAACCATATCTGGTAGTAT----------TAACCCTTG----------TT---TTTCTCTCCTAGAATAAT--AACTTTGTTGTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGGTTGTGTAAAATTTTGTATGCTTCCCTGGCAATTAATATTGGATTCTGTTT-ACATGTAGTA------------TTTTTTTTTTTCAAAAGATTTTCTAGAGAAGACACAGAATCATCCGTGACAgtgcctcgtaacggaattatttcaaaccatatctggtagtgttaacctttggttgaaaagcttgcttttctctcctggaataataagtttgttctttaaaattaactagattttgtatataaaagggtgattt
gi|9 : CCGGGGTGCCTCGTAA-CGGAAATATTTCAACCCATATCTGGTAGTGT----------TAATCTTTGGTTGAAATGCTTGCTTTTATCTCCTGGAATAATAAG--TATGTTTTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGATTTTGTAAAATTGTGTATGCTTCCCTGACAATTG--ATTGGATTCTG-TTAACATGTAGTAAGTTGGAATTTGGTTTTTTTTTTCAAAATATTTTCTAGAGAAGTCTCAAAATCATCTGTGAC
gi|12 : TGTT-TGAAATATTATAACCAGATTTTTTATATAGGCCTATATTTTAGTGTGATTAGTTGTGTAAAATTTTGCATGCTTCCATGGCGATGA--ATTGGAGTCTGTTT-ACATGTGATAA
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): GCAAAGGGTAAAAACAGACAAACAGCTGTACAAAGCAAAGAGCCATAGAAACAGTACAAGGCATAGACAATA
Unaligned ( gi|23 ): ACAAACGACTGCTAAACTGTACATAGACAAAGAGACGTAGAAACAGTACAAGGCATAACAAT
Unaligned ( gi|25 ): GACAGAGACATTACAAGGCATAACAATACACAGAAAGCATA
Unaligned ( gi|26 ): AACAAAGGTAAAAAACAAACAAAAAGCTGTACGAGG
Alignments
lowQualScore : 22 111111111111111 111111111 2222222222 11111111111111111 222222222222 1111 1 11111111 555555555555555555555555555555555555555555555 111111 111 44444444444 1111 3333333333 11
lowQualScore : 0 00 444444444444444 111111111 8888888888 3 3 3 3 44 4 8 0 1 666 4 4 9 4 99999999999999999 66 222222222222 1 4 0 0000 1 0 99999 88888888 5 66 5 888888888888888888888888888888888888888888888 0 66 4 66 4 55 4 4 666 4 4 4 666666 5 3 000 6 5 88888888888 0 5 1 1 0 6 7777 5555555555 2 33 3 3 1 1 1 1 3
lowQualScore : . .. ............... ......... .......... . . . . .. . . . . ... . . . . ................. .. ............ . . . .... . . ..... ........ . .. . ............................................. . .. . .. . .. . . ... . . . ...... . . ... . . ........... . . . . . . .... .......... . .. . . . . . . .
lowQualScore : 2 66 777777777777777 888888888 2222222222 1 3 3 6 88 0 3 8 4 444 0 0 8 4 66666666666666666 11 888888888888 4 3 4 6666 0 1 00000 11111111 0 99 0 444444444444444444444444444444444444444444444 1 11 4 11 0 55 0 0 333 0 0 0 444444 7 7 000 7 7 88888888888 8 6 0 4 8 7 0000 0000000000 0 88 2 2 0 0 0 0 7
consensus : ACAAAGACAAACAGACATAGAAACCAGTACAAGGC---------------AT---------AACAC-AT------ACACAGAAA-GCATAAAATAAAC-AA-ACTGC-AAGC-ATGC-ATTAAATAAAATAACTAAAATGATAGG---TTAA-GATAGG-CAGAAAACTAA-AA-A--CTA----------AA--GCA------------AATACAAGCACTTGCTTGGATA----TAATAAAACAAAAAC--T-GAGACAAGGAGAAGAAATAAG--------GAA-GAA--A-AA-A--------------A--------ANGAAAA---------CA-CATAGTTAGGTTGAT--TAGTTACAAGCTG--GACAAC-T--ACAGAGAGGATCCTCCCAGGTC-T-GGA--G-CAGTCTG-CC-AAAGAGTTTG------TA-GTTATCTGCTT---GTC-TGATTTCATTTGGCAGGCTGTTCCAGATCCGGGGTGCCTCGTAA-CGGAAAGATTTCAAACCATATCTGGTAGTA--------TGTTAACCTTTGGTTGAAAAGCTTGCTTTTCTCTCCTGGAATAATAAGTTTGTTGTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGGTTGTGTAAAATTTTGTATGCTTCCCTGGCAATTA--ATTGGATTCTGTTTACATGTAGTAAGTTGGAATTTGTTTTTTTTTTTCAAAAGATTTTCTAGAGAAGNCTCAGAATCATCCGTGACA
Reference ( family-4920 ) : ACAAAGACAAACAGACATAGAAACCAGTACAAGGC---------------AT---------GACACCAC------ACACAGAAA-GCATAAAATAAAC-AA-ACTGC-AAGC-ATGC-ATTAAATAAAATAACTAAAATGATAGG---TTAA-GATAGG-CAGAAAACTAA-AA-A--CTA----------AA--GCA------------AATACAAGCACTTGCTTGGATA----TAATAAAACAAAAAC--T-GAGACAAGGAGAAGAAATAAG--------GAA-GAA--A-AN-A--------------A--------ATGAAAA---------NA-CATAGTTAGGTTGAT--TAGTTGCAAGCTG--GACAAC-T--ACAGAGAGGATCCTCCCAGGTC-T-GGA--G-CAGTCTG-CC-AAAGAGTTTG------TA-GTTATCCGCTT---GTC-TGATTTCATTTGGCAGGCTGTTCCAGATCCGGGGTGCCTCGTAA-CGGAAAGATTTCAAACCATATCTGGTAGTAT-------TGTTAACCTTTGGTTGAAAAGCTTGCTTTTCTCTCCTGGAATAATAAGTTTGTTGTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGGTTGTGTAAAATTTTGTATGCTTCCCTGGCGATTA--ATTGGATTCTGTTTACATGTAGTAAGTTGGAATTTGNTTTTTTTTTTCAAAANATTTTCTAGAGAAGNCNCAGAATCATCCGTGACA
gi|1 : ATAAAGACAAACAGACATAGAAACCAATAAAAGGT---------------AT---------GGCACCAC------ACACAAAAA-ACATAAAACGAAC-AA-ACTGC-AAGC-ATGC-ATTAAATAAAATAGCTAAAATCGTAGG---TTAA-GATAGG-CAAAAAACTAG-AA-A--CTA----------AA--ACA------------AATACAAGCACTTGCTTGGATA----TAATAAAACAAAAAC--T-GAGACAATGAGAAGAAATACG--------GAA-GAA--A-AC-A--------------A--------ATGAAAA---------AA-CATAGTTAGGTTAAT--TTGTTACAAGCTG--GACAAC-T--ACAGAGGGGATCCTCCCAGGTC-T-GGA--G-CAGTCTG-CC-AAAGAGTTTG------TA-GTTATCTGCTT---GTC-TGATTTCATTTAGCAGGCTATTCCAGATCCGGGGTGCCTCATAA-CGGATAGAATTCAAACCATATCTGGTGGTATACGAGTATATTAACCTTTGGTTGAAAAGCTTGCATTTCTCTCCTGGAATAAT--GTTTGTTGTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGGTAGTGTAGAATTTTGTATGCTTTCCTGGCAATTA--ATTAGATTCTG-TTACATGTAGTAAGTTGGAATTTGTTTTATTTTTTCAAAAGATTTTCTAGAGAAGGATCAGAATCATCAGTGACA
gi|10 : CAGGCTGTTCCAGATCCGGGGTGCCTCGTAC-CGAAGAGATTTCAAACCATATCTGGTAGTA----------TTAACC-------------CTTGTTTTTCTCTCCTAGAATAATAACTTTGTTGTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGGTTGTGTAAAATTTTGTATGCTTCCCTGGCAATTAATATTGGATTCTGTTTACATGTAGTA------------TTTTTTTTTTTCAAAAGATTTTCTAGAGAAGACACAGAATCATCCGTGACA
gi|11 : ACAAAGACAAACAGACATAAA---CAGTACAAGGC---------------AT---------AACA--AT------ACACAGAAA-GCATAAAGTAAAC-AA-ACTGC-AAAC-ATGC-ATT-AATTAAATAACTAAAAAGATAGG---TTAA-GATAGG-CAGAAAACTAA-AAGA--CTA----------AA--ACA------------AATAC
gi|12 : taaaaaacaaacaaaaagctgtTGTT-TGAAATATTATAACCAGATTTTTTATATAGGCCTATATTTTAGTGTGATTAGTTGTGTAAAATTTTGCATGCTTCCATGGCGATGA--ATTGGAGTCTGTTTACATGTGATAAtaaaa
gi|13 : gcagtttctttgtgtaataaatgtatggcttcaaagtaACAAGAACAAACAGACATAGAAAC-AGTATAAGGC---------------AT---------AACAT-AT------ACACAGAAA-GCACAAAATAAACAAA-ACTGC-A
gi|14 : aacaaaggtaaaaaacaaaagctgtATAAGGACAA-CAGACATAGAAAACAGTACA-GGC---------------AT---------AACA--AT------ACGCAGAAA-GCATACAATAAAC-AA-ACTGC-AAAC-ATGC-ATTAAAT-AAATAACTAAAATGTTAGG---TTctatatgttttaaaacatttacaggataagaggca
gi|15 : acaaaggtaaaaaacaacaaaaagctgtAACAGACATAGAAAC-AGTACAAGGC---------------AT---------GATAC-----------ACAGAAA-GCGTAAAATAAAC-AA-A-------AC--TGC-ATTAATTAAA-TAACTAAAAAGATAGG---TTAA-GATAGG-CAGAAAACTAA-AAGA--CTA----------AA--ACA------------AATACAAGCA
gi|16 : AC-T--ACAGAGAG-ATC-TCCCAG-TC-T-GGA--G----TCTG-CC-AAAGAGT
gi|17 : TA----TGGTAAAATAAAAAC--T-GAGACAAAGAGAAAAA-------------GAA-AAA--A-AA-A--------------AT-------ATGGAAA----------A-CATGG----GTTGATATTAGTTGCAAGCTG--GACAAC-T--ACAGGGAGGATCTTCCCAGGTC-T-TGAACG-TAG--TG-CC-Agatcacttatttaatattcccctctctttccttggtcggagggtgtttgttgtcagctccatgcacatataaatgagtaggaatttga
gi|18 : agACAAAGACAAACAGACATTAAAAC-AGTACAAGGC---------------AT---------AACA--AT------ACACAGAAA-GCATAAAATAAAC-AA-A
gi|19 : aaaggtaaaaacaaacaaaaagctgtAAGAC---------------AA---------GCCACCAC------TCACAGAAA-GCATAAAATAAAC-AA-ACTGC-AAGC-ATGC-ATTGCATAAAATA-------------G---TTAA-GATATG-CAAAAAac
gi|2 : acaAGACAAACAGACATAGAAAC-AGTACAAGACATAACAATAAAAGGTAT---------GACACCAC------ACACAAAAA-GCATAAAATAAAC-AA-ACTGT-AAGC-ATGC-ATTAAATAAAATAATTAAAATCATAGG---TTAA-GGTAGG-CA-AAAACTAA-AA-G--CCAAAGCAAACACAA--GCACTTGGATATAAAAAGACAAACACT-G---AGACAAGGAGAAGAAAAGAAAAAA--A-AAAATAAGGGGAAAAAATGAG--------GAAAGAA--A-AA-AAAAAAAAAAAAAAGA--------AAGAAAA---------CAACATATTAAAGTTTGT--TGATT-------------AAC-T--ACAGAGAGGATCCTCCCAGGTC-T-GGA--G-CAGTCTG-CC-AAAGAGTTTG------TA-GTCATCTGCTTAATGTC-TGATTTCATTTGGCAGGCTGTTCCAGATCCGGGGTGCCTCATAA-CTGAAAGAATTTAAACCATATCTGGTGGTA----------TTAATTTTTGGTTG-AAAGCTTGCATTTCTCTCCTGGAGTGATAAGTTTGTTGTTATGAAAc
gi|20 : AGACAAACAGACATAGAAA-CAGTACGAGGC---------------AT---------AACA
gi|21 : ACAAAG-CAAAGAGCCATAGAAAC-AGTACAAGGC---------------ATA--------GACAataaagggtttgacaccacacactgactgaaaaaggca
gi|22 : gcaaagggtaaaaacagacaaacagctgtAATCATAGGAAATTAA-GATAGG-CAAAAACCTAA-AG----CTA----------AA--GCA------------AATACAAGCA----CTTGGATA----TAATAata
gi|23 : ACATAGACAAAGAGACGTAGAAA-CAGTACAAGGC---------------AT---------AACAg
gi|24 : acaaacgactgctaaactgtAACAGACATAAAA--CAGTACAAGGC---------------ATAAAAGGTATGACACCAC------ACAat
gi|25 : GACAGAGA---CATTACAAGGC---------------AT---------AACA--AT------ACACAGAAA-GCATA
gi|3 : ACAAGGGCGAACAGACATAGAAAC-AGTACAAGG----------------AT---------AACA--AT------ACACAGAAA-G-A-AAAATAAAC-AATACTGC-TAACGATCCCATTAAATAAA-TAACTAAAATGATAGG---TTAAAGATAGGTCAGAAAACTAA-AA-AAACTA----------AATAGCA------------AATACAAGCACTTGCTTAGATA----TGATAAA-CAAAAAC--TTGAG-CAGGAAGAAGAAATAAG--------GAA-GAA--A-AATA--------------A--------AT-AAAC---------CA-CATAGTTAGGTTGAT--TAGTTACAAGCTG--GAAAACAT--ACAGAGAGGATCCTCCCAGGTCCT-GGA--GGCAGTCTGACC-AAAGAGGTTG------TAAGTTATCTGCTT---GTC-TGATTTCATGTTGCAAGCTGTTCCAGATCCGGGGTGCCTCGTAA-CGGAAA
gi|4 : aaaggtaaaaaacaaacaaaaagctgtAGGCATAAAAA----TAGAAGGT---------------TT---------GACTCCACTCACAAACACAAAAAAGCATAAAATAAAC-AA-GCTG--AAAC--------TAAATAAAATAACTAAAATCATGGT---CTAA-GATAGA-CA-AAAACTTA-AA-G--TTA----------AA--GCA------------AATTCAAGCACTTG----GATA----CTACAAAA---AAA---T-GAGACAATGAGAAGAAAGAGA--------GAC-AAA--C-AA-T--------------A--------ATGAAAA---------G--CATAGGTAGATTGAT--TAACTGTAAGCTG--GACATC-T--ACATAGAGGATCCTTCCAGGTC-A-GGA--A-CAGTCTG-CT-AAAGAGTTTG------TA-GTTATCCACTT---GCC-TGATTACATTTGCTAGGCGGTTCCAGATCCGGG
gi|5 : acagtgcaAAACAGACATAGAAAC-AGTACAAGAC---------------AT---------AACA----------------------ATAAA-TAAAC-AA-ACTGC-AAGC-ATGC-ATTAAAT-AAATAGCTAAAATGATAGG---TTAA-GATAGA-CAGAAAACTAA-AATA--CTA----------AA--GCA------------AATACAAGCACTTGCTTAGATA----TAATAAAACAAAAAC--T-GAGACAAGGAGAAGAAATAAGGAATTTAAGAA-GAA--A-AA-A--------------A--------AAAAAAAAAC------CA-CATAGTTAGGTTAAT--TAGTTACAAGCTG--GACAAC-T--TCAAAGAGGATCCTCCCAGGTC-T-GG---G-CAGTCTG-CC-AAAGAGTTTGTATATATA-GTTATCTGCTT---GTa
gi|6 : caaaaactgtacaaCAAGGAGAAGAAATAAG--------GAA-GAAAGA-AG-A--------------A--------AAAAAAACAAATAAACCA-CATAGTTAGGTTAAT--TAGTTACAAGCTG--GACAAC-T--ACAGAGAGGATCCTCCCAGGTC-T-GGA--G-CAGTCTG-CC-AAAGAGTTTG------TA-GTTATCTGCTT---GTC-TGATTTCATTTGGCAGGCTGTTCCAGATCCGGGGTGCCTCGTAA-CGGAATTATTTCAAACCATATCTGGTAG----------TGTTAACCTTTGGTTGAAAAGCTTGCTTTTCTCTCCTGGAATAATAAGTTTGTTCTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATT
gi|7 : AAAGACAAACAGACATAAA---CAGTACAAGGC---------------AT---------AA----AT------ACACAAAAA-GCAATAAATAAAC-AA-ACCGCAAAGC-ATGC--TTAAAT--AATAACTAAAATGA-AGG---TTAA-GA-AGG-CA-AAAACTAATTT-A--CT-----------AA--GTG------------AGTAC-AGCACTTGCTTGGAT--------TAAAA-AAAAACAAT-GAGACAAGGAGAAG-AATAAG--------GAG-TAA--ATAC-A--------------ACCCCCCCCCCTCAAC---------CC-CATAGTTAGG-TAAT--TAGTTACAAGCTG--GACAAC-T--ACAGAGA-GAT-CTCCCA-GTC-T-GG------AGTCTG-CC-AAAGAGt
gi|8 : acaaaggtaaaaaacacaaaaagcatgtTTGAT--TGGTGGCA-GTTGAAGGCAAT-TTCACGGTGAGGATCTTCT-ACGTC-TTGGA--A-CAGTCTA-TCGAAAGA-TTTA------AA-AAGA-CTGCTT----TCGCAAATGCACTAGGGAGACTGTTCAAGAGGCGGGTTTCCTCAAAAGCGAAAAGATTTTAAACCATACCTGGTAGTAT-------
gi|9 : agaaacaaaaaagacattgacgcttttaggatgttgtataacgataaagcaaaacgcaacataatggataggcgcatgaaaaaatactatagcattataattgtttCCGGGGTGCCTCGTAA-CGGAAATATTTCAACCCATATCTGGTAGT----------GTTAATCTTTGGTTGAAATGCTTGCTTTTATCTCCTGGAATAATAAGTATGTTTTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGATTTTGTAAAATTGTGTATGCTTCCCTGACAATTG--ATTGGATTCTGTTAACATGTAGTAAGTTGGAATTTGGTTTTTTTTTTCAAAATATTTTCTAGAGAAGTCTCAAAATCATCTGTGAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): AACAAAGGTAAAAAACAAACAAAAAGCTGTACGAGG
Alignments
lowQualScore : 22 44444444444444444444444444 1111 3333333333333333333333 1111 1 111 11111111 555555555555555555555555555555555555555555 111 11111111 111 22222222222222 1111 3333333333 11
lowQualScore : 0 00 2 22222222222222222222222222 3 3 3 3 44 4 8 0 1 666 4 4 9 4 9999 66 9999999999999999999999 1 4 0 0000 1 0 444 88888888 4 333333333333333333333333333333333333333333 4 4 777 66 66 4 55 4 4 000 4 4 66666666 000 6 5 44444444444444 0 5 1 1 0 6 7777 5555555555 33 3 3 1 3
lowQualScore : . .. . .......................... . . . . .. . . . . ... . . . . .... .. ...................... . . . .... . . ... ........ . .......................................... . . ... .. .. . .. . . ... . . ........ ... . . .............. . . . . . . .... .......... .. . . . .
lowQualScore : 2 66 4 44444444444444444444444444 1 3 3 6 88 0 3 8 4 444 0 0 8 4 2222 11 4444444444444444444444 4 3 4 6666 0 1 333 11111111 4 222222222222222222222222222222222222222222 4 4 888 11 11 0 55 0 0 333 0 0 99999999 000 7 7 55555555555555 8 6 0 4 8 7 0000 0000000000 88 2 2 0 7
consensus : ACAAAGACAAACAGACATAGAAACCAGTACAAGGCATA-AC-------A------------------ATACACAGAAA-GCATAAAATAAAC-AA-ACTGC-AAGC-ATGC-ATTAAATAAAATAACTAAAATGATAGG---TTAA-GATAGG-CAGAAAACTAA-AA-A--CTAAA--GC----------------------AAATACAAGCACTTGCTTGGATA----TAATAAAACAAAAAC--TGAGACAAGGAGAAGAAATAAG--------GAA-GAAAAAAA--------------A---------NGAAAA-----------CA-C-ATAGTTAGGTT---GAT--TAGTTACAAGCTG--GACAAC-T--ACAGAGAGGATCCTCCCAGGT-CT-GGA--GCAGTCTG-CC-AAAGAGTTTG------T-AGTTATCTGCTT---GTC-TGATTTCATTTGGCAGGCTGTTCCAGATCCGGGGTGCCTCGTAA-CGGAAAGATTTCAAACCATATCTGGT--------AGTATGTTAACCTTTGGTTGAAAAGCTTGCTTTTCTCTCCTGGAATAATAAGTTTGTTGTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGGTTGTGTAAAATTTTGTATGCTTCCCTGGCAATTA--ATTGGATTCTGTTTACATGTAGTAAGTTGGAATTTGTTTTTTTTTTTCAAAAGATTTTCTAGAGAAGNCTCAGAATCATCCGTGACA
Reference ( family-4920 ) : ACAAAGACAAACAGACATAGAAACCAGTACAAGGCATA-AC-------A----------------C-ATACACAGAAA-GCATAAAATAAAC-AA-ACTGC-AAGC-ATGC-ATTAAATAAAATAACTAAAATGATAGG---TTAA-GATAGG-CAGAAAACTAA-AA-A--CTAAA--GC----------------------AAATACAAGCACTTGCTTGGATA----TAATAAAACAAAAAC--TGAGACAAGGAGAAGAAATAAG--------GAA-GAAAAAAA--------------A---------NGAAAA-----------CA-C-ATAGTTAGGTT---GAT--TAGTTACAAGCTG--GACAAC-T--ACAGAGAGGATCCTCCCAGGT-CT-GGA--GCAGTCTG-CC-AAAGAGTTTG------T-AGTTATCTGCTT---GTC-TGATTTCATTTGGCAGGCTGTTCCAGATCCGGGGTGCCTCGTAA-CGGAAAGATTTCAAACCATATCTGGT--------AGTATGTTAACCTTTGGTTGAAAAGCTTGCTTTTCTCTCCTGGAATAATAAGTTTGTTGTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGGTTGTGTAAAATTTTGTATGCTTCCCTGGCAATTA--ATTGGATTCTGTTTACATGTAGTAAGTTGGAATTTGTTTTTTTTTTTCAAAAGATTTTCTAGAGAAGNCTCAGAATCATCCGTGACA
gi|1 : ATAAAGACAAACAGACATAGAAACCAATAAAAGGTATG-GC-------A----------------CCACACACAAAAA-ACATAAAACGAAC-AA-ACTGC-AAGC-ATGC-ATTAAATAAAATAGCTAAAATCGTAGG---TTAA-GATAGG-CAAAAAACTAG-AA-A--CTAAA--AC----------------------AAATACAAGCACTTGCTTGGATA----TAATAAAACAAAAAC--TGAGACAATGAGAAGAAATACG--------GAA-GAAAACAA--------------A---------TGAAAA-----------AA-C-ATAGTTAGGTT---AAT--TTGTTACAAGCTG--GACAAC-T--ACAGAGGGGATCCTCCCAGGT-CT-GGA--GCAGTCTG-CC-AAAGAGTTTG------T-AGTTATCTGCTT---GTC-TGATTTCATTTAGCAGGCTATTCCAGATCCGGGGTGCCTCATAA-CGGATAGAATTCAAACCATATCTGGTGGTATACGAGTATATTAACCTTTGGTTGAAAAGCTTGCATTTCTCTCCTGGAATAAT--GTTTGTTGTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGGTAGTGTAGAATTTTGTATGCTTTCCTGGCAATTA--ATTAGATTCTG-TTACATGTAGTAAGTTGGAATTTGTTTTATTTTTTCAAAAGATTTTCTAGAGAAGGATCAGAATCATCAGTGACA
gi|10 : CAGGCTGTTCCAGATCCGGGGTGCCTCGTAC-CGAAGAGATTTCAAACCATATCTGGT--------AGTA--TTAACC-------------CTTGTTTTTCTCTCCTAGAATAATAACTTTGTTGTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGGTTGTGTAAAATTTTGTATGCTTCCCTGGCAATTAATATTGGATTCTGTTTACATGTAGTA------------TTTTTTTTTTTCAAAAGATTTTCTAGAGAAGACACAGAATCATCCGTGACA
gi|11 : ACAAAGACAAACAGACATAAA---CAGTACAAGGCATA-AC-------A------------------ATACACAGAAA-GCATAAAGTAAAC-AA-ACTGC-AAAC-ATGC-ATT-AATTAAATAACTAAAAAGATAGG---TTAA-GATAGG-CAGAAAACTAA-AAGA--CTAAA--AC----------------------AAATAC
gi|12 : taaaaaacaaacaaaaagctgtTGTT-TGAAATATTATAACCAGATTTTTTATATAGGCCTATATTTTAGTGTGATTAGTTGTGTAAAATTTTGCATGCTTCCATGGCGATGA--ATTGGAGTCTGTTTACATGTGATAAtaaaa
gi|13 : gcagtttctttgtgtaataaatgtatggcttcaaagtaACAAGAACAAACAGACATAGAAAC-AGTATAAGGCATA-AC-------A----------------T-ATACACAGAAA-GCACAAAATAAACAAA-ACTGC-A
gi|14 : aacaaaggtaaaaaacaaaagctgtATAAGGACAA-CAGACATAGAAAACAGTACA-GGCATA-AC-------A------------------ATACGCAGAAA-GCATACAATAAAC-AA-ACTGC-AAAC-ATGC-ATTAAAT-AAATAACTAAAATGTTAGG---TTctatatgttttaaaacatttacaggataagaggca
gi|15 : acaaaggtaaaaaacaacaaaaagctgtAACAGACATAGAAAC-AGTACAAGGCATG-A----------------------------TACACAGAAA-GCGTAAAATAAAC-AA-A-------AC--TGC-ATTAATTAAA-TAACTAAAAAGATAGG---TTAA-GATAGG-CAGAAAACTAA-AAGA--CTAAA--AC----------------------AAATACAAGCA
gi|16 : AC-T--ACAGAGAG-ATC-TCCCAG-T-CT-GGA--G---TCTG-CC-AAAGAGT
gi|17 : TA----TGGTAAAATAAAAAC--TGAGACAAAGAGAAAAA-------------GAA-AAAAAAAAT-------------A---------TGGAAA------------A-C-ATGG----GTT---GATATTAGTTGCAAGCTG--GACAAC-T--ACAGGGAGGATCTTCCCAGGT-CT-TGAACGTAG--TG-CC-Agatcacttatttaatattcccctctctttccttggtcggagggtgtttgttgtcagctccatgcacatataaatgagtaggaatttga
gi|18 : agACAAAGACAAACAGACATTAAAAC-AGTACAAGGCATA-AC-------A------------------ATACACAGAAA-GCATAAAATAAAC-AA-A
gi|19 : aaaggtaaaaacaaacaaaaagctgtACAAGCCAC---C-------A----------------C--T-CACAGAAA-GCATAAAATAAAC-AA-ACTGC-AAGC-ATGC-ATTGCATAAAATA-------------G---TTAA-GATATG-CAAAAAac
gi|2 : acaaagAGACAAACAGACATAGAAAC-AGTACAAGACATA-AC-------AATAAAAGGTATGACACC-ACACACAAAAA-GCATAAAATAAAC-AA-ACTGT-AAGC-ATGC-ATTAAATAAAATAATTAAAATCATAGG---TTAA-GGTAGG-CA-AAAACTAA-AA-G--CCAAA--GCAAACACAAGCACTTGGATATAAAAAGACAAACACT-G---AGACAAGGAGAAGAAAAGAAAAAA--AAAAATAAGGGGAAAAAATGAG--------GAAAGAAAAAAAAAAAAAAAAAAAGAA---------AGAAAA-----------CAAC-ATATTAAAGTT---TGT--TGATTA-------------AC-T--ACAGAGAGGATCCTCCCAGGT-CT-GGA--GCAGTCTG-CC-AAAGAGTTTG------T-AGTCATCTGCTTAATGTC-TGATTTCATTTGGCAGGCTGTTCCAGATCCGGGGTGCCTCATAA-CTGAAAGAATTTAAACCATATCTGGT--------GGTA--TTAATTTTTGGTTG-AAAGCTTGCATTTCTCTCCTGGAGTGATAAGTTTGTTGTTATGAAAc
gi|20 : AGACAAACAGACATAGAAA-CAGTACGAGGCATA-AC-------A------------------ATA
gi|21 : ACAAAG-CAAAGAGCCATAGAAAC-AGTACAAGGCATAGAC-------A------------------ATAaagggtttgacaccacacactgactgaaaaaggca
gi|22 : gcaaagggtaaaaacagacaaacagctgtAATCATAGGAAATTAA-GATAGG-CAAAAACCTAA-AG----CTAAA--GC----------------------AAATACAAGCA----CTTGGATA----TAATA
gi|23 : ACATAGACAAAGAGACGTAGAAAC-AGTACAAGGCATA-AC-------A----------------g
gi|24 : acaaacgactgctaaactgtAACAGACATAAAA--CAGTACAAGGCATA-Aat
gi|25 : GACAGAGA---CATTACAAGGCATA-AC-------A------------------ATACACAGAAA-GCATAaaggtatgacaccacaca
gi|3 : ACAAGGGCGAACAGACATAGAAAC-AGTACAAGG-ATA-AC-------A------------------ATACACAGAAA-G-A-AAAATAAAC-AATACTGC-TAACGATCCCATTAAATAAA-TAACTAAAATGATAGG---TTAAAGATAGGTCAGAAAACTAA-AA-AAACTAAATAGC----------------------AAATACAAGCACTTGCTTAGATA----TGATAAA-CAAAAACT-TGAG-CAGGAAGAAGAAATAAG--------GAA-GAAAAATA--------------A---------ATAAAC-----------CA-C-ATAGTTAGGTT---GAT--TAGTTACAAGCTG--GAAAACAT--ACAGAGAGGATCCTCCCAGGTCCT-GGAG-GCAGTCTGACC-AAAGAGGTTG------TAAGTTATCTGCTT---GTC-TGATTTCATGTTGCAAGCTGTTCCAGATCCGGGGTGCCTCGTAA-CGGAAA
gi|4 : aaaggtaaaaaacaaacaaaaagctgtAGGCATAAAAA----TAGAAGGTTTG-ACTCCACTCA----------------C-AAACACAAAAAAGCATAAAATAAAC-AA-GCTG--AAAC--------TAAATAAAATAACTAAAATCATGGT---CTAA-GATAGA-CA-AAAACTTA-AA-G--TTAAA--GC----------------------AAATTCAAGCACTTG----GATA----CTACAAAA---AAA---TGAGACAATGAGAAGAAAGAGA--------GAC-AAACAATA--------------A---------TGAAAA------------G-C-ATAGGTAGATT---GAT--TAACTGTAAGCTG--GACATC-T--ACATAGAGGATCCTTCCAGGT-CA-GGA--ACAGTCTG-CT-AAAGAGTTTG------T-AGTTATCCACTT---GCC-TGATTACATTTGCTAGGCGGTTCCAGATCCGGG
gi|5 : acagtgcaAAACAGACATAGAAAC-AGTACAAGACATA-AC-------A--------------------------------ATAAA-TAAAC-AA-ACTGC-AAGC-ATGC-ATTAAAT-AAATAGCTAAAATGATAGG---TTAA-GATAGA-CAGAAAACTAA-AATA--CTAAA--GC----------------------AAATACAAGCACTTGCTTAGATA----TAATAAAACAAAAAC--TGAGACAAGGAGAAGAAATAAGGAATTTAAGAA-GAAAAAAA--------------A---------AAAAAAAAC--------CA-C-ATAGTTAGGTT---AAT--TAGTTACAAGCTG--GACAAC-T--TCAAAGAGGATCCTCCCAGGT-CT-GG---GCAGTCTG-CC-AAAGAGTTTGTATATAT-AGTTATCTGCTT---GTa
gi|6 : caaaaactgtacaaCAAGGAGAAGAAATAAG--------GAA-GAAAGAAG--------------A---------AAAAAAAACAAATAAACCA-C-ATAGTTAGGTT---AAT--TAGTTACAAGCTG--GACAAC-T--ACAGAGAGGATCCTCCCAGGT-CT-GGA--GCAGTCTG-CC-AAAGAGTTTG------T-AGTTATCTGCTT---GTC-TGATTTCATTTGGCAGGCTGTTCCAGATCCGGGGTGCCTCGTAA-CGGAATTATTTCAAACCATATCTGGT--------AG--TGTTAACCTTTGGTTGAAAAGCTTGCTTTTCTCTCCTGGAATAATAAGTTTGTTCTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATT
gi|7 : AAAGACAAACAGACATAAA---CAGTACAAGGCATA-A---------------------------ATACACAAAAA-GCAATAAATAAAC-AA-ACCGCAAAGC-ATGC--TTAAAT--AATAACTAAAATGA-AGG---TTAA-GA-AGG-CA-AAAACTAATTT-A--CT-AA--GT----------------------GAGTAC-AGCACTTGCTTGGAT--------TAAAA-AAAAACAATGAGACAAGGAGAAG-AATAAG--------GAG-TAAATACA--------------ACCCCCCCCCCTCAAC-----------CC-C-ATAGTTAGG-T---AAT--TAGTTACAAGCTG--GACAAC-T--ACAGAGA-GAT-CTCCCA-GT-CT-GG-----AGTCTG-CC-AAAGAGt
gi|8 : acaaaggtaaaaaacacaaaaagcatgt-GAAAAAAT--------------A---------CTATAG-----------CA-TTATAATT--GTTTTTGAT--TGGTGGCA-GTTGAAGGCAAT-TTCACGGTGAGGATCTTCT-ACGT-CTTGGA--ACAGTCTA-TCGAAAGA-TTTA------A-AAAGA-CTGCTT----TCGCAAATGCACTAGGGAGACTGTTCAAGAGGCGGGTTTCCTCAAAAGCGAAAAGATTTTAAACCATACCTGGT--------AGTAT
gi|9 : agaaacaaaaaagacattgacgcttttaggatgttgtataacgataaagcaaaacgcaacataatggataggcgcatCCGGGGTGCCTCGTAA-CGGAAATATTTCAACCCATATCTGGT--------AGT--GTTAATCTTTGGTTGAAATGCTTGCTTTTATCTCCTGGAATAATAAGTATGTTTTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGATTTTGTAAAATTGTGTATGCTTCCCTGACAATTG--ATTGGATTCTGTTAACATGTAGTAAGTTGGAATTTGGTTTTTTTTTTCAAAATATTTTCTAGAGAAGTCTCAAAATCATCTGTGAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): AACAAAGGTAAAAAACAAACAAAAAGCTGTACGAGG
Alignments
lowQualScore : 11 11111111111111111 1111 3333333333333333333333 1111 1 111 11111111 555555555555555555555555555555555555555555 111 11111111 111 22222222222222 1111 3333333333 11
lowQualScore : 0 88 2 55 77777777777777777 3 3 3 3 44 4 8 0 1 666 4 4 9 4 9999 66 9999999999999999999999 1 4 0 0000 1 0 444 88888888 4 333333333333333333333333333333333333333333 4 4 777 66 66 4 55 4 4 000 4 4 66666666 000 6 5 44444444444444 0 5 1 1 0 6 7777 5555555555 33 3 3 1 3
lowQualScore : . .. . .. ................. . . . . .. . . . . ... . . . . .... .. ...................... . . . .... . . ... ........ . .......................................... . . ... .. .. . .. . . ... . . ........ ... . . .............. . . . . . . .... .......... .. . . . .
lowQualScore : 8 33 4 99 55555555555555555 1 3 3 6 88 0 3 8 4 444 0 0 8 4 2222 11 4444444444444444444444 4 3 4 6666 0 1 333 11111111 4 222222222222222222222222222222222222222222 4 4 888 11 11 0 55 0 0 333 0 0 99999999 000 7 7 55555555555555 8 6 0 4 8 7 0000 0000000000 88 2 2 0 7
consensus : ACAAAGACAAACAGACATAGAAACCAGTACAAGGCATA-ACA--AT-----------------ACACAGAAA-GCATAAAATAAAC-AA-ACTGC-AAGC-ATGC-ATTAAATAAAATAACTAAAATGATAGG---TTAA-GATAGG-CAGAAAACTAA-AA-A--CTAAA--GC----------------------AAATACAAGCACTTGCTTGGATA----TAATAAAACAAAAAC--TGAGACAAGGAGAAGAAATAAG--------GAA-GAAAAAAA--------------A---------NGAAAA-----------CA-C-ATAGTTAGGTT---GAT--TAGTTACAAGCTG--GACAAC-T--ACAGAGAGGATCCTCCCAGGT-CT-GGA--GCAGTCTG-CC-AAAGAGTTTG------T-AGTTATCTGCTT---GTC-TGATTTCATTTGGCAGGCTGTTCCAGATCCGGGGTGCCTCGTAA-CGGAAAGATTTCAAACCATATCTGGT--------AGTATGTTAACCTTTGGTTGAAAAGCTTGCTTTTCTCTCCTGGAATAATAAGTTTGTTGTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGGTTGTGTAAAATTTTGTATGCTTCCCTGGCAATTA--ATTGGATTCTGTTTACATGTAGTAAGTTGGAATTTGTTTTTTTTTTTCAAAAGATTTTCTAGAGAAGNCTCAGAATCATCCGTGACA
Reference ( family-4920 ) : ACAAAGACAAACAGACATAGAAACCAGTACAAGGCATA-ACA--AT-----------------ACACAGAAA-GCATAAAATAAAC-AA-ACTGC-AAGC-ATGC-ATTAAATAAAATAACTAAAATGATAGG---TTAA-GATAGG-CAGAAAACTAA-AA-A--CTAAA--GC----------------------AAATACAAGCACTTGCTTGGATA----TAATAAAACAAAAAC--TGAGACAAGGAGAAGAAATAAG--------GAA-GAAAAAAA--------------A---------NGAAAA-----------CA-C-ATAGTTAGGTT---GAT--TAGTTACAAGCTG--GACAAC-T--ACAGAGAGGATCCTCCCAGGT-CT-GGA--GCAGTCTG-CC-AAAGAGTTTG------T-AGTTATCTGCTT---GTC-TGATTTCATTTGGCAGGCTGTTCCAGATCCGGGGTGCCTCGTAA-CGGAAAGATTTCAAACCATATCTGGT--------AGTATGTTAACCTTTGGTTGAAAAGCTTGCTTTTCTCTCCTGGAATAATAAGTTTGTTGTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGGTTGTGTAAAATTTTGTATGCTTCCCTGGCAATTA--ATTGGATTCTGTTTACATGTAGTAAGTTGGAATTTGTTTTTTTTTTTCAAAAGATTTTCTAGAGAAGNCTCAGAATCATCCGTGACA
gi|1 : ATAAAGACAAACAGACATAGAAACCAATAAAAGGTATG-GCACCAC-----------------ACACAAAAA-ACATAAAACGAAC-AA-ACTGC-AAGC-ATGC-ATTAAATAAAATAGCTAAAATCGTAGG---TTAA-GATAGG-CAAAAAACTAG-AA-A--CTAAA--AC----------------------AAATACAAGCACTTGCTTGGATA----TAATAAAACAAAAAC--TGAGACAATGAGAAGAAATACG--------GAA-GAAAACAA--------------A---------TGAAAA-----------AA-C-ATAGTTAGGTT---AAT--TTGTTACAAGCTG--GACAAC-T--ACAGAGGGGATCCTCCCAGGT-CT-GGA--GCAGTCTG-CC-AAAGAGTTTG------T-AGTTATCTGCTT---GTC-TGATTTCATTTAGCAGGCTATTCCAGATCCGGGGTGCCTCATAA-CGGATAGAATTCAAACCATATCTGGTGGTATACGAGTATATTAACCTTTGGTTGAAAAGCTTGCATTTCTCTCCTGGAATAAT--GTTTGTTGTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGGTAGTGTAGAATTTTGTATGCTTTCCTGGCAATTA--ATTAGATTCTG-TTACATGTAGTAAGTTGGAATTTGTTTTATTTTTTCAAAAGATTTTCTAGAGAAGGATCAGAATCATCAGTGACA
gi|10 : CAGGCTGTTCCAGATCCGGGGTGCCTCGTAC-CGAAGAGATTTCAAACCATATCTGGT--------AGTA--TTAACC-------------CTTGTTTTTCTCTCCTAGAATAATAACTTTGTTGTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGGTTGTGTAAAATTTTGTATGCTTCCCTGGCAATTAATATTGGATTCTGTTTACATGTAGTA------------TTTTTTTTTTTCAAAAGATTTTCTAGAGAAGACACAGAATCATCCGTGACA
gi|11 : ACAAAGACAAACAGACATAAA---CAGTACAAGGCATA-ACA--AT-----------------ACACAGAAA-GCATAAAGTAAAC-AA-ACTGC-AAAC-ATGC-ATT-AATTAAATAACTAAAAAGATAGG---TTAA-GATAGG-CAGAAAACTAA-AAGA--CTAAA--AC----------------------AAATAC
gi|12 : taaaaaacaaacaaaaagctgtTGTT-TGAAATATTATAACCAGATTTTTTATATAGGCCTATATTTTAGTGTGATTAGTTGTGTAAAATTTTGCATGCTTCCATGGCGATGA--ATTGGAGTCTGTTTACATGTGATAAtaaaa
gi|13 : gcagtttctttgtgtaataaatgtatggcttcaaagtaACAAGAACAAACAGACATAGAAA-CAGTATAAGGCATA-ACAT-AT-----------------ACACAGAAA-GCACAAAATAAACAAA-ACTGC-A
gi|14 : aacaaaggtaaaaaacaaaagctgtATAAGGACAA-CAGACATAGAAAACAGTACA-GGCATA-ACA--AT-----------------ACGCAGAAA-GCATACAATAAAC-AA-ACTGC-AAAC-ATGC-ATTAAAT-AAATAACTAAAATGTTAGG---TTctatatgttttaaaacatttacaggataagaggca
gi|15 : acaaaggtaaaaaacaacaaaaagctgtAACAGACATAGAAAC-AGTACAAGGCATG-A-----T-----------------ACACAGAAA-GCGTAAAATAAAC-AA-A-------AC--TGC-ATTAATTAAA-TAACTAAAAAGATAGG---TTAA-GATAGG-CAGAAAACTAA-AAGA--CTAAA--AC----------------------AAATACAAGCA
gi|16 : AC-T--ACAGAGAG-ATC-TCCCAG-T-CT-GGA--G---TCTG-CC-AAAGAGT
gi|17 : TA----TGGTAAAATAAAAAC--TGAGACAAAGAGAAAAA-------------GAA-AAAAAAAAT-------------A---------TGGAAA------------A-C-ATGG----GTT---GATATTAGTTGCAAGCTG--GACAAC-T--ACAGGGAGGATCTTCCCAGGT-CT-TGAACGTAG--TG-CC-Agatcacttatttaatattcccctctctttccttggtcggagggtgtttgttgtcagctccatgcacatataaatgagtaggaatttga
gi|18 : agACAAAGACAAACAGACATTAAAAC-AGTACAAGGCATA-ACA--AT-----------------ACACAGAAA-GCATAAAATAAAC-AA-A
gi|19 : aaaggtaaaaacaaacaaaaagctgtACAAGCCACC-AC----T------------------CACAGAAA-GCATAAAATAAAC-AA-ACTGC-AAGC-ATGC-ATTGCATAAAATA-------------G---TTAA-GATATG-CAAAAAac
gi|2 : acaaagAGACAAACAGACATAGAAAC-AGTACAAGACATA-ACA--ATAAAAGGTATGACACCACACACAAAAA-GCATAAAATAAAC-AA-ACTGT-AAGC-ATGC-ATTAAATAAAATAATTAAAATCATAGG---TTAA-GGTAGG-CA-AAAACTAA-AA-G--CCAAA--GCAAACACAAGCACTTGGATATAAAAAGACAAACACT-G---AGACAAGGAGAAGAAAAGAAAAAA--AAAAATAAGGGGAAAAAATGAG--------GAAAGAAAAAAAAAAAAAAAAAAAGAA---------AGAAAA-----------CAAC-ATATTAAAGTT---TGT--TGATTA-------------AC-T--ACAGAGAGGATCCTCCCAGGT-CT-GGA--GCAGTCTG-CC-AAAGAGTTTG------T-AGTCATCTGCTTAATGTC-TGATTTCATTTGGCAGGCTGTTCCAGATCCGGGGTGCCTCATAA-CTGAAAGAATTTAAACCATATCTGGT--------GGTA--TTAATTTTTGGTTG-AAAGCTTGCATTTCTCTCCTGGAGTGATAAGTTTGTTGTTATGAAAc
gi|20 : AGACAAACAGACATAGAAA-CAGTACGAGGCATA-ACA--AT-----------------A
gi|21 : ACAAAG-CAAAGAGCCATAGAAAC-AGTACAAGGCATAGACA--AT-----------------Aaagggtttgacaccacacactgactgaaaaaggca
gi|22 : gcaaagggtaaaaacagacaaacagctgtAATCATAGGAAATTAA-GATAGG-CAAAAACCTAA-AG----CTAAA--GC----------------------AAATACAAGCA----CTTGGATA----TAATA
gi|23 : ACATAGACAAAGAGACGTAGAAAC-AGTACAAGGCATA-ACA--AT-----------------g
gi|24 : acaaacgactgctaaactgtAACAGACATAAAA--CAGTACAAGGCATA-A
gi|25 : GACAGAGA---CATTACAAGGCATA-ACA--AT-----------------ACACAGAAA-GCATAaaggtatgacaccacaca
gi|3 : ACAAGGGCGAACAGACATAGAAAC-AGTACAAGG-ATA-ACA--AT-----------------ACACAGAAA-G-A-AAAATAAAC-AATACTGC-TAACGATCCCATTAAATAAA-TAACTAAAATGATAGG---TTAAAGATAGGTCAGAAAACTAA-AA-AAACTAAATAGC----------------------AAATACAAGCACTTGCTTAGATA----TGATAAA-CAAAAACT-TGAG-CAGGAAGAAGAAATAAG--------GAA-GAAAAATA--------------A---------ATAAAC-----------CA-C-ATAGTTAGGTT---GAT--TAGTTACAAGCTG--GAAAACAT--ACAGAGAGGATCCTCCCAGGTCCT-GGAG-GCAGTCTGACC-AAAGAGGTTG------TAAGTTATCTGCTT---GTC-TGATTTCATGTTGCAAGCTGTTCCAGATCCGGGGTGCCTCGTAA-CGGAAA
gi|4 : aaaggtaaaaaacaaacaaaaagctgt-ACA--A------------------ACACAAAAAAGCATAAAATAAAC-AA-GCTG--AAAC--------TAAATAAAATAACTAAAATCATGGT---CTAA-GATAGA-CA-AAAACTTA-AA-G--TTAAA--GC----------------------AAATTCAAGCACTTG----GATA----CTACAAAA---AAA---TGAGACAATGAGAAGAAAGAGA--------GAC-AAACAATA--------------A---------TGAAAA------------G-C-ATAGGTAGATT---GAT--TAACTGTAAGCTG--GACATC-T--ACATAGAGGATCCTTCCAGGT-CA-GGA--ACAGTCTG-CT-AAAGAGTTTG------T-AGTTATCCACTT---GCC-TGATTACATTTGCTAGGCGGTTCCAGATCCGGG
gi|5 : acagtgcaaggcataaaaatagaaggtttgactccactcAAACAGACATAGAAAC-AGTACAAGACATA-ACA--AT-----------------A---------------AATAAAC-AA-ACTGC-AAGC-ATGC-ATTAAAT-AAATAGCTAAAATGATAGG---TTAA-GATAGA-CAGAAAACTAA-AATA--CTAAA--GC----------------------AAATACAAGCACTTGCTTAGATA----TAATAAAACAAAAAC--TGAGACAAGGAGAAGAAATAAGGAATTTAAGAA-GAAAAAAA--------------A---------AAAAAAAAC--------CA-C-ATAGTTAGGTT---AAT--TAGTTACAAGCTG--GACAAC-T--TCAAAGAGGATCCTCCCAGGT-CT-GG---GCAGTCTG-CC-AAAGAGTTTGTATATAT-AGTTATCTGCTT---GTa
gi|6 : caaaaactgtacaaCAAGGAGAAGAAATAAG--------GAA-GAAAGAAG--------------A---------AAAAAAAACAAATAAACCA-C-ATAGTTAGGTT---AAT--TAGTTACAAGCTG--GACAAC-T--ACAGAGAGGATCCTCCCAGGT-CT-GGA--GCAGTCTG-CC-AAAGAGTTTG------T-AGTTATCTGCTT---GTC-TGATTTCATTTGGCAGGCTGTTCCAGATCCGGGGTGCCTCGTAA-CGGAATTATTTCAAACCATATCTGGT--------AG--TGTTAACCTTTGGTTGAAAAGCTTGCTTTTCTCTCCTGGAATAATAAGTTTGTTCTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATT
gi|7 : AAAGACAAACAGACATAAA---CAGTACAAGGCATA-A----AT-----------------ACACAAAAA-GCAATAAATAAAC-AA-ACCGCAAAGC-ATGC--TTAAAT--AATAACTAAAATGA-AGG---TTAA-GA-AGG-CA-AAAACTAATTT-A--CT-AA--GT----------------------GAGTAC-AGCACTTGCTTGGAT--------TAAAA-AAAAACAATGAGACAAGGAGAAG-AATAAG--------GAG-TAAATACA--------------ACCCCCCCCCCTCAAC-----------CC-C-ATAGTTAGG-T---AAT--TAGTTACAAGCTG--GACAAC-T--ACAGAGA-GAT-CTCCCA-GT-CT-GG-----AGTCTG-CC-AAAGAGt
gi|8 : acaaaggtaaaaaacacaaaaagcatgt-GAAAAAAT--------------A---------CTATAG-----------CA-TTATAATT--GTTTTTGAT--TGGTGGCA-GTTGAAGGCAAT-TTCACGGTGAGGATCTTCT-ACGT-CTTGGA--ACAGTCTA-TCGAAAGA-TTTA------A-AAAGA-CTGCTT----TCGCAAATGCACTAGGGAGACTGTTCAAGAGGCGGGTTTCCTCAAAAGCGAAAAGATTTTAAACCATACCTGGT--------AGTAT
gi|9 : agaaacaaaaaagacattgacgcttttaggatgttgtataacgataaagcaaaacgcaacataatggataggcgcatCCGGGGTGCCTCGTAA-CGGAAATATTTCAACCCATATCTGGT--------AGT--GTTAATCTTTGGTTGAAATGCTTGCTTTTATCTCCTGGAATAATAAGTATGTTTTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGATTTTGTAAAATTGTGTATGCTTCCCTGACAATTG--ATTGGATTCTGTTAACATGTAGTAAGTTGGAATTTGGTTTTTTTTTTCAAAATATTTTCTAGAGAAGTCTCAAAATCATCTGTGAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): AACAAAGGTAAAAAACAAACAAAAAGCTGTACGAGG
Alignments
lowQualScore : 11 11111111111111111 1111 3333333333333333333333 1111 1 111 11111111 555555555555555555555555555555555555555555 111 11111111 111 22222222222222 1111 3333333333 11
lowQualScore : 0 88 2 55 77777777777777777 3 3 3 3 44 4 8 0 1 666 4 4 9 4 9999 66 9999999999999999999999 1 4 0 0000 1 0 444 88888888 4 333333333333333333333333333333333333333333 4 4 777 66 66 4 55 4 4 000 4 4 66666666 000 6 5 44444444444444 0 5 1 1 0 6 7777 5555555555 33 3 3 1 3
lowQualScore : . .. . .. ................. . . . . .. . . . . ... . . . . .... .. ...................... . . . .... . . ... ........ . .......................................... . . ... .. .. . .. . . ... . . ........ ... . . .............. . . . . . . .... .......... .. . . . .
lowQualScore : 8 33 4 99 55555555555555555 1 3 3 6 88 0 3 8 4 444 0 0 8 4 2222 11 4444444444444444444444 4 3 4 6666 0 1 333 11111111 4 222222222222222222222222222222222222222222 4 4 888 11 11 0 55 0 0 333 0 0 99999999 000 7 7 55555555555555 8 6 0 4 8 7 0000 0000000000 88 2 2 0 7
consensus : ACAAAGACAAACAGACATAGAAACCAGTACAAGGCATA-ACA--AT-----------------ACACAGAAA-GCATAAAATAAAC-AA-ACTGC-AAGC-ATGC-ATTAAATAAAATAACTAAAATGATAGG---TTAA-GATAGG-CAGAAAACTAA-AA-A--CTAAA--GC----------------------AAATACAAGCACTTGCTTGGATA----TAATAAAACAAAAAC--TGAGACAAGGAGAAGAAATAAG--------GAA-GAAAAAAA--------------A---------NGAAAA-----------CA-C-ATAGTTAGGTT---GAT--TAGTTACAAGCTG--GACAAC-T--ACAGAGAGGATCCTCCCAGGT-CT-GGA--GCAGTCTG-CC-AAAGAGTTTG------T-AGTTATCTGCTT---GTC-TGATTTCATTTGGCAGGCTGTTCCAGATCCGGGGTGCCTCGTAA-CGGAAAGATTTCAAACCATATCTGGT--------AGTATGTTAACCTTTGGTTGAAAAGCTTGCTTTTCTCTCCTGGAATAATAAGTTTGTTGTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGGTTGTGTAAAATTTTGTATGCTTCCCTGGCAATTA--ATTGGATTCTGTTTACATGTAGTAAGTTGGAATTTGTTTTTTTTTTTCAAAAGATTTTCTAGAGAAGNCTCAGAATCATCCGTGACA
Reference ( family-4920 ) : ACAAAGACAAACAGACATAGAAACCAGTACAAGGCATA-ACA--AT-----------------ACACAGAAA-GCATAAAATAAAC-AA-ACTGC-AAGC-ATGC-ATTAAATAAAATAACTAAAATGATAGG---TTAA-GATAGG-CAGAAAACTAA-AA-A--CTAAA--GC----------------------AAATACAAGCACTTGCTTGGATA----TAATAAAACAAAAAC--TGAGACAAGGAGAAGAAATAAG--------GAA-GAAAAAAA--------------A---------NGAAAA-----------CA-C-ATAGTTAGGTT---GAT--TAGTTACAAGCTG--GACAAC-T--ACAGAGAGGATCCTCCCAGGT-CT-GGA--GCAGTCTG-CC-AAAGAGTTTG------T-AGTTATCTGCTT---GTC-TGATTTCATTTGGCAGGCTGTTCCAGATCCGGGGTGCCTCGTAA-CGGAAAGATTTCAAACCATATCTGGT--------AGTATGTTAACCTTTGGTTGAAAAGCTTGCTTTTCTCTCCTGGAATAATAAGTTTGTTGTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGGTTGTGTAAAATTTTGTATGCTTCCCTGGCAATTA--ATTGGATTCTGTTTACATGTAGTAAGTTGGAATTTGTTTTTTTTTTTCAAAAGATTTTCTAGAGAAGNCTCAGAATCATCCGTGACA
gi|1 : ATAAAGACAAACAGACATAGAAACCAATAAAAGGTATG-GCACCAC-----------------ACACAAAAA-ACATAAAACGAAC-AA-ACTGC-AAGC-ATGC-ATTAAATAAAATAGCTAAAATCGTAGG---TTAA-GATAGG-CAAAAAACTAG-AA-A--CTAAA--AC----------------------AAATACAAGCACTTGCTTGGATA----TAATAAAACAAAAAC--TGAGACAATGAGAAGAAATACG--------GAA-GAAAACAA--------------A---------TGAAAA-----------AA-C-ATAGTTAGGTT---AAT--TTGTTACAAGCTG--GACAAC-T--ACAGAGGGGATCCTCCCAGGT-CT-GGA--GCAGTCTG-CC-AAAGAGTTTG------T-AGTTATCTGCTT---GTC-TGATTTCATTTAGCAGGCTATTCCAGATCCGGGGTGCCTCATAA-CGGATAGAATTCAAACCATATCTGGTGGTATACGAGTATATTAACCTTTGGTTGAAAAGCTTGCATTTCTCTCCTGGAATAAT--GTTTGTTGTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGGTAGTGTAGAATTTTGTATGCTTTCCTGGCAATTA--ATTAGATTCTG-TTACATGTAGTAAGTTGGAATTTGTTTTATTTTTTCAAAAGATTTTCTAGAGAAGGATCAGAATCATCAGTGACA
gi|10 : CAGGCTGTTCCAGATCCGGGGTGCCTCGTAC-CGAAGAGATTTCAAACCATATCTGGT--------AGTA--TTAACC-------------CTTGTTTTTCTCTCCTAGAATAATAACTTTGTTGTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGGTTGTGTAAAATTTTGTATGCTTCCCTGGCAATTAATATTGGATTCTGTTTACATGTAGTA------------TTTTTTTTTTTCAAAAGATTTTCTAGAGAAGACACAGAATCATCCGTGACA
gi|11 : ACAAAGACAAACAGACATAAA---CAGTACAAGGCATA-ACA--AT-----------------ACACAGAAA-GCATAAAGTAAAC-AA-ACTGC-AAAC-ATGC-ATT-AATTAAATAACTAAAAAGATAGG---TTAA-GATAGG-CAGAAAACTAA-AAGA--CTAAA--AC----------------------AAATAC
gi|12 : taaaaaacaaacaaaaagctgtTGTT-TGAAATATTATAACCAGATTTTTTATATAGGCCTATATTTTAGTGTGATTAGTTGTGTAAAATTTTGCATGCTTCCATGGCGATGA--ATTGGAGTCTGTTTACATGTGATAAtaaaa
gi|13 : gcagtttctttgtgtaataaatgtatggcttcaaagtaACAAGAACAAACAGACATAGAAA-CAGTATAAGGCATA-ACAT-AT-----------------ACACAGAAA-GCACAAAATAAACAAA-ACTGC-A
gi|14 : aacaaaggtaaaaaacaaaagctgtATAAGGACAA-CAGACATAGAAAACAGTACA-GGCATA-ACA--AT-----------------ACGCAGAAA-GCATACAATAAAC-AA-ACTGC-AAAC-ATGC-ATTAAAT-AAATAACTAAAATGTTAGG---TTctatatgttttaaaacatttacaggataagaggca
gi|15 : acaaaggtaaaaaacaacaaaaagctgtAACAGACATAGAAAC-AGTACAAGGCATG-A-----T-----------------ACACAGAAA-GCGTAAAATAAAC-AA-A-------AC--TGC-ATTAATTAAA-TAACTAAAAAGATAGG---TTAA-GATAGG-CAGAAAACTAA-AAGA--CTAAA--AC----------------------AAATACAAGCA
gi|16 : AC-T--ACAGAGAG-ATC-TCCCAG-T-CT-GGA--G---TCTG-CC-AAAGAGT
gi|17 : TA----TGGTAAAATAAAAAC--TGAGACAAAGAGAAAAA-------------GAA-AAAAAAAAT-------------A---------TGGAAA------------A-C-ATGG----GTT---GATATTAGTTGCAAGCTG--GACAAC-T--ACAGGGAGGATCTTCCCAGGT-CT-TGAACGTAG--TG-CC-Agatcacttatttaatattcccctctctttccttggtcggagggtgtttgttgtcagctccatgcacatataaatgagtaggaatttga
gi|18 : agACAAAGACAAACAGACATTAAAAC-AGTACAAGGCATA-ACA--AT-----------------ACACAGAAA-GCATAAAATAAAC-AA-A
gi|19 : aaaggtaaaaacaaacaaaaagctgtACAAGCCACC-AC----T------------------CACAGAAA-GCATAAAATAAAC-AA-ACTGC-AAGC-ATGC-ATTGCATAAAATA-------------G---TTAA-GATATG-CAAAAAac
gi|2 : acaaagAGACAAACAGACATAGAAAC-AGTACAAGACATA-ACA--ATAAAAGGTATGACACCACACACAAAAA-GCATAAAATAAAC-AA-ACTGT-AAGC-ATGC-ATTAAATAAAATAATTAAAATCATAGG---TTAA-GGTAGG-CA-AAAACTAA-AA-G--CCAAA--GCAAACACAAGCACTTGGATATAAAAAGACAAACACT-G---AGACAAGGAGAAGAAAAGAAAAAA--AAAAATAAGGGGAAAAAATGAG--------GAAAGAAAAAAAAAAAAAAAAAAAGAA---------AGAAAA-----------CAAC-ATATTAAAGTT---TGT--TGATTA-------------AC-T--ACAGAGAGGATCCTCCCAGGT-CT-GGA--GCAGTCTG-CC-AAAGAGTTTG------T-AGTCATCTGCTTAATGTC-TGATTTCATTTGGCAGGCTGTTCCAGATCCGGGGTGCCTCATAA-CTGAAAGAATTTAAACCATATCTGGT--------GGTA--TTAATTTTTGGTTG-AAAGCTTGCATTTCTCTCCTGGAGTGATAAGTTTGTTGTTATGAAAc
gi|20 : AGACAAACAGACATAGAAA-CAGTACGAGGCATA-ACA--AT-----------------A
gi|21 : ACAAAG-CAAAGAGCCATAGAAAC-AGTACAAGGCATAGACA--AT-----------------Aaagggtttgacaccacacactgactgaaaaaggca
gi|22 : gcaaagggtaaaaacagacaaacagctgtAATCATAGGAAATTAA-GATAGG-CAAAAACCTAA-AG----CTAAA--GC----------------------AAATACAAGCA----CTTGGATA----TAATA
gi|23 : ACATAGACAAAGAGACGTAGAAAC-AGTACAAGGCATA-ACA--AT-----------------g
gi|24 : acaaacgactgctaaactgtAACAGACATAAAA--CAGTACAAGGCATA-A
gi|25 : GACAGAGA---CATTACAAGGCATA-ACA--AT-----------------ACACAGAAA-GCATAaaggtatgacaccacaca
gi|3 : ACAAGGGCGAACAGACATAGAAAC-AGTACAAGG-ATA-ACA--AT-----------------ACACAGAAA-G-A-AAAATAAAC-AATACTGC-TAACGATCCCATTAAATAAA-TAACTAAAATGATAGG---TTAAAGATAGGTCAGAAAACTAA-AA-AAACTAAATAGC----------------------AAATACAAGCACTTGCTTAGATA----TGATAAA-CAAAAACT-TGAG-CAGGAAGAAGAAATAAG--------GAA-GAAAAATA--------------A---------ATAAAC-----------CA-C-ATAGTTAGGTT---GAT--TAGTTACAAGCTG--GAAAACAT--ACAGAGAGGATCCTCCCAGGTCCT-GGAG-GCAGTCTGACC-AAAGAGGTTG------TAAGTTATCTGCTT---GTC-TGATTTCATGTTGCAAGCTGTTCCAGATCCGGGGTGCCTCGTAA-CGGAAA
gi|4 : aaaggtaaaaaacaaacaaaaagctgt-ACA--A------------------ACACAAAAAAGCATAAAATAAAC-AA-GCTG--AAAC--------TAAATAAAATAACTAAAATCATGGT---CTAA-GATAGA-CA-AAAACTTA-AA-G--TTAAA--GC----------------------AAATTCAAGCACTTG----GATA----CTACAAAA---AAA---TGAGACAATGAGAAGAAAGAGA--------GAC-AAACAATA--------------A---------TGAAAA------------G-C-ATAGGTAGATT---GAT--TAACTGTAAGCTG--GACATC-T--ACATAGAGGATCCTTCCAGGT-CA-GGA--ACAGTCTG-CT-AAAGAGTTTG------T-AGTTATCCACTT---GCC-TGATTACATTTGCTAGGCGGTTCCAGATCCGGG
gi|5 : acagtgcaaggcataaaaatagaaggtttgactccactcAAACAGACATAGAAAC-AGTACAAGACATA-ACA--AT-----------------A---------------AATAAAC-AA-ACTGC-AAGC-ATGC-ATTAAAT-AAATAGCTAAAATGATAGG---TTAA-GATAGA-CAGAAAACTAA-AATA--CTAAA--GC----------------------AAATACAAGCACTTGCTTAGATA----TAATAAAACAAAAAC--TGAGACAAGGAGAAGAAATAAGGAATTTAAGAA-GAAAAAAA--------------A---------AAAAAAAAC--------CA-C-ATAGTTAGGTT---AAT--TAGTTACAAGCTG--GACAAC-T--TCAAAGAGGATCCTCCCAGGT-CT-GG---GCAGTCTG-CC-AAAGAGTTTGTATATAT-AGTTATCTGCTT---GTa
gi|6 : caaaaactgtacaaCAAGGAGAAGAAATAAG--------GAA-GAAAGAAG--------------A---------AAAAAAAACAAATAAACCA-C-ATAGTTAGGTT---AAT--TAGTTACAAGCTG--GACAAC-T--ACAGAGAGGATCCTCCCAGGT-CT-GGA--GCAGTCTG-CC-AAAGAGTTTG------T-AGTTATCTGCTT---GTC-TGATTTCATTTGGCAGGCTGTTCCAGATCCGGGGTGCCTCGTAA-CGGAATTATTTCAAACCATATCTGGT--------AG--TGTTAACCTTTGGTTGAAAAGCTTGCTTTTCTCTCCTGGAATAATAAGTTTGTTCTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATT
gi|7 : AAAGACAAACAGACATAAA---CAGTACAAGGCATA-A----AT-----------------ACACAAAAA-GCAATAAATAAAC-AA-ACCGCAAAGC-ATGC--TTAAAT--AATAACTAAAATGA-AGG---TTAA-GA-AGG-CA-AAAACTAATTT-A--CT-AA--GT----------------------GAGTAC-AGCACTTGCTTGGAT--------TAAAA-AAAAACAATGAGACAAGGAGAAG-AATAAG--------GAG-TAAATACA--------------ACCCCCCCCCCTCAAC-----------CC-C-ATAGTTAGG-T---AAT--TAGTTACAAGCTG--GACAAC-T--ACAGAGA-GAT-CTCCCA-GT-CT-GG-----AGTCTG-CC-AAAGAGt
gi|8 : acaaaggtaaaaaacacaaaaagcatgt-GAAAAAAT--------------A---------CTATAG-----------CA-TTATAATT--GTTTTTGAT--TGGTGGCA-GTTGAAGGCAAT-TTCACGGTGAGGATCTTCT-ACGT-CTTGGA--ACAGTCTA-TCGAAAGA-TTTA------A-AAAGA-CTGCTT----TCGCAAATGCACTAGGGAGACTGTTCAAGAGGCGGGTTTCCTCAAAAGCGAAAAGATTTTAAACCATACCTGGT--------AGTAT
gi|9 : agaaacaaaaaagacattgacgcttttaggatgttgtataacgataaagcaaaacgcaacataatggataggcgcatCCGGGGTGCCTCGTAA-CGGAAATATTTCAACCCATATCTGGT--------AGT--GTTAATCTTTGGTTGAAATGCTTGCTTTTATCTCCTGGAATAATAAGTATGTTTTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGATTTTGTAAAATTGTGTATGCTTCCCTGACAATTG--ATTGGATTCTGTTAACATGTAGTAAGTTGGAATTTGGTTTTTTTTTTCAAAATATTTTCTAGAGAAGTCTCAAAATCATCTGTGAC
blockSeqs : AC G T AAAAGGTATGACACCAC A A T A GA C T G AAA A T G T AAA TA AAACACAAGCACTTGGATATAA T C AGGA G T CAA GAATTTAA A AAAAAAAAAAAAGAAAGAAAAC A T TTT AT AA A TC C T AAC A G TATATAT AAT G G AGTA A A T A ATTA CCTATATTTT AT T A A C
blockSeqs : C . . . . . . . A . A G . . . G . GA . . T C . A G CT . . AAAAAAAAACAAATAAACC . . . . . . . . . AG . . TA . . . GGTA A A A . . . . T A T T
blockSeqs : C . . . . . . . A . A G . . . A . GA . . T C . A C C . . ACCCCCCCCCCTCAACC . . . . . . . . . A . . T . . . AGTG . T T . . . . T .
blockSeqs : C . . . . . . . A . A C . . . A . TA . . T C . G C A . . AAAAAAAAACC . . . . . . . . . A . . T . . . AGTG . . T . . .
blockSeqs : C . . . . . . . A . A C . . . G . G . . . . . T . C . . TATGGAAA . . . . . . . . . A . . T . . . .
blockSeqs : C . . . . . . . A . A G . . . G . G . . . . . A . . . . AATAAACC . . . . . . . . . A . . A . .
blockSeqs : C . . . . . . . A . . C . . . . . A . . . . . . ACTATAGC . . . . . . . . . A . .
blockSeqs : C . . . . . . . . . . G . . . . . . . . . ATGAAAA . . . . . . . . . . . .
blockSeqs : C . . . . . . . . . . G . . . . . . . . . . .
blockSeqs : C . . . . . . . . .
blockSeqs : C . . . . . .
blockSeqs : C . . . .
blockSeqs : C . . .
blockSeqs : C . . .
blockSeqs : . . .
blockSeqs : .
blockSeqCons : C* ** GA** AGTG**********
originalCons : ACAAAGACAAACAGACATAGAAACCAGTACAAGGCATA-ACA--AT-----------------ACACAGAAA-GCATAAAATAAAC-AA-ACTGC-AAGC-ATGC-ATTAAATAAAATAACTAAAATGATAGG---TTAA-GATAGG-CAGAAAACTAA-AA-A--CTAAA--GC----------------------AAATACAAGCACTTGCTTGGATA----TAATAAAACAAAAAC--TGAGACAAGGAGAAGAAATAAG--------GAA-GAAAAAAA--------------A---------NGAAAA-----------CA-C-ATAGTTAGGTT---GAT--TAGTTACAAGCTG--GACAAC-T--ACAGAGAGGATCCTCCCAGGT-CT-GGA--GCAGTCTG-CC-AAAGAGTTTG------T-AGTTATCTGCTT---GTC-TGATTTCATTTGGCAGGCTGTTCCAGATCCGGGGTGCCTCGTAA-CGGAAAGATTTCAAACCATATCTGGT--------AGTATGTTAACCTTTGGTTGAAAAGCTTGCTTTTCTCTCCTGGAATAATAAGTTTGTTGTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGGTTGTGTAAAATTTTGTATGCTTCCCTGGCAATTA--ATTGGATTCTGTTTACATGTAGTAAGTTGGAATTTGTTTTTTTTTTTCAAAAGATTTTCTAGAGAAGNCTCAGAATCATCCGTGACA
finalCons : ACAAAGACAAACAGACATAGAAAC-AGTACAAGGCATA-ACA--AT-----------------ACACAGAAA-GCATAAAATAAAC-AA-ACTGC-AAGC-ATGC-ATTAAATAAAATAACTAAAATGATAGG---TTAA-GATAGG-CAGAAAACTAA-AAGA--CTAAA--GC----------------------AAATACAAGCACTTGCTTGGATA----TAATAAAACAAAAAC--TGAGACAAGGAGAAGAAATAAG--------GAA-GAAAAAAA--------------A---------NGAAAA-----------CA-C-ATAGTTAGGTT---GAT--TAGTTACAAGCTG--GACAAC-T--ACAGAGAGGATCCTCCCAGGT-CT-GGA--GCAGTCTG-CC-AAAGAGTTTG------T-AGTTATCTGCTT---GTC-TGATTTCATTTGGCAGGCTGTTCCAGATCCGGGGTGCCTCGTAA-CGGAAAGATTTCAAACCATATCTGGTAGTG----------TTAACCTTTGGTTGAAAAGCTTGCTTTTCTCTCCTGGAATAATAAGTTTGTTGTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGGTTGTGTAAAATTTTGTATGCTTCCCTGGCAATTA--ATTGGATTCTGTTTACATGTAGTAAGTTGGAATTTGTTTTTTTTTTTCAAAAGATTTTCTAGAGAAGNCTCAGAATCATCCGTGACA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): AACAAAGGTAAAAAACAAACAAAAAGCTGTACGAGG
Alignments
lowQualScore : 11111111111111111 111 3333333333333333333333 1111 1 111 11111111 555555555555555555555555555555555555555555 111 11111111 111 2222222222 1111 3333333333 11
lowQualScore : 33 2 88888888 2 2 55 77777777777777777 3 3 3 3 44 4 3 5 1 666 4 4 9 777 66 9999999999999999999999 1 4 0 0000 1 0 444 88888888 4 333333333333333333333333333333333333333333 4 4 777 66 66 4 55 4 4 000 4 4 66666666 000 6 5 9999999999 0 0 5 1 1 0 6 7777 5555555555 33 3 3 1 3
lowQualScore : .. . ........ . . .. ................. . . . . .. . . . . ... . . . ... .. ...................... . . . .... . . ... ........ . .......................................... . . ... .. .. . .. . . ... . . ........ ... . . .......... . . . . . . . .... .......... .. . . . .
lowQualScore : 99 5 55555555 4 4 99 55555555555555555 1 3 3 6 88 0 4 7 4 444 0 0 8 444 11 4444444444444444444444 4 3 4 6666 0 1 333 11111111 4 222222222222222222222222222222222222222222 4 4 888 11 11 0 55 0 0 333 0 0 99999999 000 7 7 2222222222 7 8 6 0 4 8 7 0000 0000000000 88 2 2 0 7
consensus : ACAAAGACAAACAGACATAG-AAAC-AGTACAAGG--------CA-TA-ACA--AT-----------------ACACAGAAA-GCATAAAATAAAC-AA-ACTGC-AAGC-ATGC-ATTAAATAAAATAACTAAAATGATAGG---TTAA-GATAGG-CAGAAAACTAAAAGA-CTAAA--GC----------------------AAATACAAGCACTTGCTTGGATA----TAATAAAACAAAAAC--TGAGACAAGGAGAAGAAATAAG--------GAA-GAAAAAAA--------------A---------NGAAAA-----------CA-C-ATAGTTAGGTT---GAT--TAGTTACAAGCTG--GACAAC-T--ACAGAGAGGATCCTCCCAGGT-CT-GGA--GCAGTCTG-CC-AAAGAGTTTG------T-AGTTATCTGCTT---GTC-TGATTTCATTTGGCAGGCTGTTCCAGATCCGGGGTGCCTCGTAA-CGGAAAGATTTCAAACCATATCTGGTAG----------TATTAACCTTTGGTTGAAAAGCTTGCTTTTCTCTCCTGGAATAATAAGTTTGTTGTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGGTTGTGTAAAATTTTGTATGCTTCCCTGGCAATTA--ATTGGATTCTGTTTACATGTAGTAAGTTGGAATTTGTTTTTTTTTTTCAAAAGATTTTCTAGAGAAGNCTCAGAATCATCCGTGACA
Reference ( family-4920 ) : ACAAAGACAAACAGACATAG-AAAC-AGTACAAGG--------CA-TA-ACA--AT-----------------ACACAGAAA-GCATAAAATAAAC-AA-ACTGC-AAGC-ATGC-ATTAAATAAAATAACTAAAATGATAGG---TTAA-GATAGG-CAGAAAACTAAAAGA-CTAAA--GC----------------------AAATACAAGCACTTGCTTGGATA----TAATAAAACAAAAAC--TGAGACAAGGAGAAGAAATAAG--------GAA-GAAAAAAA--------------A---------NGAAAA-----------CA-C-ATAGTTAGGTT---GAT--TAGTTACAAGCTG--GACAAC-T--ACAGAGAGGATCCTCCCAGGT-CT-GGA--GCAGTCTG-CC-AAAGAGTTTG------T-AGTTATCTGCTT---GTC-TGATTTCATTTGGCAGGCTGTTCCAGATCCGGGGTGCCTCGTAA-CGGAAAGATTTCAAACCATATCTGGTAG----------TGTTAACCTTTGGTTGAAAAGCTTGCTTTTCTCTCCTGGAATAATAAGTTTGTTGTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGGTTGTGTAAAATTTTGTATGCTTCCCTGGCAATTA--ATTGGATTCTGTTTACATGTAGTAAGTTGGAATTTGTTTTTTTTTTTCAAAAGATTTTCTAGAGAAGNCTCAGAATCATCCGTGACA
gi|1 : ATAAAGACAAACAGACATAG-AAACCAATAAAAGG--------TA-TG-GCACCAC-----------------ACACAAAAA-ACATAAAACGAAC-AA-ACTGC-AAGC-ATGC-ATTAAATAAAATAGCTAAAATCGTAGG---TTAA-GATAGG-CAAAAAACTAGAA-A-CTAAA--AC----------------------AAATACAAGCACTTGCTTGGATA----TAATAAAACAAAAAC--TGAGACAATGAGAAGAAATACG--------GAA-GAAAACAA--------------A---------TGAAAA-----------AA-C-ATAGTTAGGTT---AAT--TTGTTACAAGCTG--GACAAC-T--ACAGAGGGGATCCTCCCAGGT-CT-GGA--GCAGTCTG-CC-AAAGAGTTTG------T-AGTTATCTGCTT---GTC-TGATTTCATTTAGCAGGCTATTCCAGATCCGGGGTGCCTCATAA-CGGATAGAATTCAAACCATATCTGGTGGTATACGAGTATATTAACCTTTGGTTGAAAAGCTTGCATTTCTCTCCTGGAATAAT--GTTTGTTGTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGGTAGTGTAGAATTTTGTATGCTTTCCTGGCAATTA--ATTAGATTCTG-TTACATGTAGTAAGTTGGAATTTGTTTTATTTTTTCAAAAGATTTTCTAGAGAAGGATCAGAATCATCAGTGACA
gi|10 : CAGGCTGTTCCAGATCCGGGGTGCCTCGTAC-CGAAGAGATTTCAAACCATATCTGGTAG----------TATTAACC-------------CTTGTTTTTCTCTCCTAGAATAATAACTTTGTTGTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGGTTGTGTAAAATTTTGTATGCTTCCCTGGCAATTAATATTGGATTCTGTTTACATGTAGTA------------TTTTTTTTTTTCAAAAGATTTTCTAGAGAAGACACAGAATCATCCGTGACA
gi|11 : ACAAAGACAAACAGACATA---AAC-AGTACAAGG--------CA-TA-ACA--AT-----------------ACACAGAAA-GCATAAAGTAAAC-AA-ACTGC-AAAC-ATGC-ATT-AATTAAATAACTAAAAAGATAGG---TTAA-GATAGG-CAGAAAACTAAAAGA-CTAAA--AC----------------------AAATAC
gi|12 : taaaaaacaaacaaaaagctgtTGTT-TGAAATATTATAACCAGATTTTTTATATAGGCCTATATTTTAGTGTGATTAGTTGTGTAAAATTTTGCATGCTTCCATGGCGATGA--ATTGGAGTCTGTTTACATGTGATAAtaaaa
gi|13 : gcagtttctttgtgtaataaatgtatggcttcaaagtaACAAGAACAAACAGACATAG-AAAC-AGTATAAGG--------CA-TA-ACAT-AT-----------------ACACAGAAA-GCACAAAATAAACAAA-ACTGC-A
gi|14 : aacaaaggtaaaaaacaaaagctgtATAAGGACAA-CAGACATAGAAAAC-AGTAC-AGG--------CA-TA-ACA--AT-----------------ACGCAGAAA-GCATACAATAAAC-AA-ACTGC-AAAC-ATGC-ATTAAAT-AAATAACTAAAATGTTAGG---TTctatatgttttaaaacatttacaggataagaggca
gi|15 : acaaaggtaaaaaacaacaaaaagctgtAACAGACATAG-AAAC-AGTACAAGG--------CA-TG-A-----T-----------------ACACAGAAA-GCGTAAAATAAAC-AA-A-------AC--TGC-ATTAATTAAA-TAACTAAAAAGATAGG---TTAA-GATAGG-CAGAAAACTAAAAGA-CTAAA--AC----------------------AAATACAAGCA
gi|16 : AC-T--ACAGAGAG-ATC-TCCCAG-T-CT-GGA--G---TCTG-CC-AAAGAGT
gi|17 : TA----TGGTAAAATAAAAAC--TGAGACAAAGAGAAAAA-------------GAA-AAAAAAAAT-------------A---------TGGAAA------------A-C-ATGG----GTT---GATATTAGTTGCAAGCTG--GACAAC-T--ACAGGGAGGATCTTCCCAGGT-CT-TGAACGTAG--TG-CC-Agatcacttatttaatattcccctctctttccttggtcggagggtgtttgttgtcagctccatgcacatataaatgagtaggaatttga
gi|18 : agACAAAGACAAACAGACATTA-AAAC-AGTACAAGG--------CA-TA-ACA--AT-----------------ACACAGAAA-GCATAAAATAAAC-AA-A
gi|19 : aaaggtaaaaacaaacaaaaagctgtACAAGC--------CA-CC-AC----T------------------CACAGAAA-GCATAAAATAAAC-AA-ACTGC-AAGC-ATGC-ATTGCATAAAATA-------------G---TTAA-GATATG-CAAAAAac
gi|2 : acaaagAGACAAACAGACATAG-AAAC-AGTACAAGA--------CA-TA-ACA--ATAAAAGGTATGACACCACACACAAAAA-GCATAAAATAAAC-AA-ACTGT-AAGC-ATGC-ATTAAATAAAATAATTAAAATCATAGG---TTAA-GGTAGG-CA-AAAACTAAAAG--CCAAA--GCAAACACAAGCACTTGGATATAAAAAGACAAACACT-G---AGACAAGGAGAAGAAAAGAAAAAA--AAAAATAAGGGGAAAAAATGAG--------GAAAGAAAAAAAAAAAAAAAAAAAGAA---------AGAAAA-----------CAAC-ATATTAAAGTT---TGT--TGATTA-------------AC-T--ACAGAGAGGATCCTCCCAGGT-CT-GGA--GCAGTCTG-CC-AAAGAGTTTG------T-AGTCATCTGCTTAATGTC-TGATTTCATTTGGCAGGCTGTTCCAGATCCGGGGTGCCTCATAA-CTGAAAGAATTTAAACCATATCTGGTGG----------TATTAATTTTTGGTTG-AAAGCTTGCATTTCTCTCCTGGAGTGATAAGTTTGTTGTTATGAAAc
gi|20 : AGACAAACAGACATAG-AAAC-AGTACGAGG--------CA-TA-ACA--AT-----------------A
gi|21 : ACAAAG-CAAAGAGCCATAG-AAAC-AGTACAAGG--------CA-TAGACA--AT-----------------Aaagggtttgacaccacacactgactgaaaaaggca
gi|22 : gcaaagggtaaaaacagacaaacagctgtAATCATAGGAAATTAA-GATAGG-CAAAAACCTAAAG---CTAAA--GC----------------------AAATACAAGCA----CTTGGATA----TAATA
gi|23 : ACATAGACAAAGAGACGTAG-AAAC-AGTACAAGG--------CA-TA-ACA--AT-----------------g
gi|24 : acaaacgactgctaaactgtAACAGACATA--AAAC-AGTACAAGG--------CA-TA-A
gi|25 : ACAG-AGAC-ATTACAAGG--------CA-TA-ACA--AT-----------------ACACAGAAA-GCATAaaggtatgacaccacaca
gi|3 : gACAAGGGCGAACAGACATAG-AAAC-AGTACAAGG---------A-TA-ACA--AT-----------------ACACAGAAA-G-A-AAAATAAAC-AATACTGC-TAACGATCCCATTAAATAAA-TAACTAAAATGATAGG---TTAAAGATAGGTCAGAAAACTAAAAAAACTAAATAGC----------------------AAATACAAGCACTTGCTTAGATA----TGATAAA-CAAAAACT-TGAG-CAGGAAGAAGAAATAAG--------GAA-GAAAAATA--------------A---------ATAAAC-----------CA-C-ATAGTTAGGTT---GAT--TAGTTACAAGCTG--GAAAACAT--ACAGAGAGGATCCTCCCAGGTCCT-GGAG-GCAGTCTGACC-AAAGAGGTTG------TAAGTTATCTGCTT---GTC-TGATTTCATGTTGCAAGCTGTTCCAGATCCGGGGTGCCTCGTAA-CGGAAA
gi|4 : aaaggtaaaaaacaaacaaaaagctgtAGGCATAA-AAAT-AG---AAGGTTTGACTCCACTC-ACA--A------------------ACACAAAAAAGCATAAAATAAAC-AA-GCTG--AAAC--------TAAATAAAATAACTAAAATCATGGT---CTAA-GATAGA-CA-AAAACTTAAAG--TTAAA--GC----------------------AAATTCAAGCACTTG----GATA----CTACAAAA---AAA---TGAGACAATGAGAAGAAAGAGA--------GAC-AAACAATA--------------A---------TGAAAA------------G-C-ATAGGTAGATT---GAT--TAACTGTAAGCTG--GACATC-T--ACATAGAGGATCCTTCCAGGT-CA-GGA--ACAGTCTG-CT-AAAGAGTTTG------T-AGTTATCCACTT---GCC-TGATTACATTTGCTAGGCGGTTCCAGATCCGGG
gi|5 : acagtgcaAAACAGACATAG-AAAC-AGTACAAGA--------CA-TA-ACA--AT-----------------A---------------AATAAAC-AA-ACTGC-AAGC-ATGC-ATTAAATAAA-TAGCTAAAATGATAGG---TTAA-GATAGA-CAGAAAACTAAAATA-CTAAA--GC----------------------AAATACAAGCACTTGCTTAGATA----TAATAAAACAAAAAC--TGAGACAAGGAGAAGAAATAAGGAATTTAAGAA-GAAAAAAA--------------A---------AAAAAAAAC--------CA-C-ATAGTTAGGTT---AAT--TAGTTACAAGCTG--GACAAC-T--TCAAAGAGGATCCTCCCAGGT-CT-GG---GCAGTCTG-CC-AAAGAGTTTGTATATAT-AGTTATCTGCTT---GTa
gi|6 : caaaaactgtacaaCAAGGAGAAGAAATAAG--------GAA-GAAAGAAG--------------A---------AAAAAAAACAAATAAACCA-C-ATAGTTAGGTT---AAT--TAGTTACAAGCTG--GACAAC-T--ACAGAGAGGATCCTCCCAGGT-CT-GGA--GCAGTCTG-CC-AAAGAGTTTG------T-AGTTATCTGCTT---GTC-TGATTTCATTTGGCAGGCTGTTCCAGATCCGGGGTGCCTCGTAA-CGGAATTATTTCAAACCATATCTGGTAG----------TGTTAACCTTTGGTTGAAAAGCTTGCTTTTCTCTCCTGGAATAATAAGTTTGTTCTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATT
gi|7 : AAAGACAAACAGACATA---AAC-AGTACAAGG--------CA-TA-A----AT-----------------ACACAAAAA-GCAATAAATAAAC-AA-ACCGCAAAGC-ATGC--TTAAAT--AATAACTAAAATGA-AGG---TTAA-GA-AGG-CA-AAAACTAATTTA-CT-AA--GT----------------------GAGTAC-AGCACTTGCTTGGAT--------TAAAA-AAAAACAATGAGACAAGGAGAAG-AATAAG--------GAG-TAAATACA--------------ACCCCCCCCCCTCAAC-----------CC-C-ATAGTTAGG-T---AAT--TAGTTACAAGCTG--GACAAC-T--ACAGAGA-GAT-CTCCCA-GT-CT-GG-----AGTCTG-CC-AAAGAGt
gi|8 : acaaaggtaaaaaacacaaaaagcatgt-GAAAAAAT--------------A---------CTATAG-----------CA-TTATAATT--GTTTTTGAT--TGGTGGCA-GTTGAAGGCAAT-TTCACGGTGAGGATCTTCT-ACGT-CTTGGA--ACAGTCTA-TCGAAAGA-TTTA------A-AAAGA-CTGCTT----TCGCAAATGCACTAGGGAGACTGTTCAAGAGGCGGGTTTCCTCAAAAGCGAAAAGATTTTAAACCATACCTGGTAG----------TAT
gi|9 : agaaacaaaaaagacattgacgcttttaggatgttgtataacgataaagcaaaacgcaacataatggataggcgcatCCGGGGTGCCTCGTAA-CGGAAATATTTCAACCCATATCTGGTAG----------TGTTAATCTTTGGTTGAAATGCTTGCTTTTATCTCCTGGAATAATAAGTATGTTTTT-TAAAAT----TAACTAGATTTTGTATATAAA----------AGGGTGATTGATTTTGTAAAATTGTGTATGCTTCCCTGACAATTG--ATTGGATTCTGTTAACATGTAGTAAGTTGGAATTTGGTTTTTTTTTTCAAAATATTTTCTAGAGAAGTCTCAAAATCATCTGTGAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): AACAAAGGTAAAAAACAAACAAAAAGCTGTACGAGG