lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 666666666666666666 1 3333 222222 4 2222 1 2222 222 1 3333333333333333 1 4444444444444444444444444444444444444444444444444444444444444444444 111 1 11 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1
lowQualScore : 111111111111111111 1 6 3 3333 3 999999 6 0 8888 6 0000 6 333 5 1111111111111111 3 7777777777777777777777777777777777777777777777777777777777777777777 222 7 6 8 11 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 0
lowQualScore : .................. . . . .... . ...... . . .... . .... . ... . ................ . ................................................................... ... . . . .. .......................................................................................... . .
lowQualScore : 333333333333333333 0 7 3 0000 7 777777 0 0 3333 0 3333 7 333 0 0000000000000000 3 0000000000000000000000000000000000000000000000000000000000000000000 666 8 0 0 00 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 8 6
consensus : ATTTTATACAGTTTTT-A---------AA-CCAACATCGAACA-TTTTAT--ATTTNAAA----TCGCATGTAAATGATGCGAGCTATT----AACTGTGTT-AACTATAAACGTTTTTGTA---CAA-GACACTATTGACAGTTCCCCGATA-AC-GCATT----GTGA-CGTCGTTC-G--TG----TTCA--AACGTCAT--GGATNTG-AACG-TT-CGANATGTCACTTCAAACANNCTCAAAATGTAAAACGCCTGAAGATT-AAA-ATGAAAGCGCTT-GCG------TT----T---A--------CT---GTGTG-TTGT-T------TT--------TCTTTGAAA------TA--TT-TTTGTATAT-TTTATTGCCGGACACTGTGATACATTATTTAA
Reference ( gi|4 ) : ATTTTATACAGTTTTT-A---------AA-CCA-CATTAAACA-TTTTAT--ATTTGAAA----CCGCATATAA-TGATGCGAGCTATT----AACTGTGTTTAACTATAAAAGTTTTTGTA---CAACGACACTATTGACAGTTTCCTG-TA-AC-GCATT----GTGA-CGTCATTC-A-ATG----TTCAATAACGTCAT--AGATTTG-AACG-TT-CAAC--GTCACTT------GTTTTTAAATGTAAAACGTCTGAGGATC-AAA-ATGAAAGCGCTT-ACG------TT----T---A--------CT---GTGTG-CTAT--------TT--------TCTTTGAAA----ATTACCTT-TTTGTATATATTTATTGCCGGACACTGTGATACATTATTTAA
gi|2 : ATTTAATACAGCTTTTGA---------AA-CCAACATCGAACAGTTTTATTTATTTTAAG----TTGCATGTAAATGATGCGAGCTATTTTAAAATTGTCTTAAACTACAAACTTTTTTGTA---CAAGGATACTATTGACAGTTTCCTGAAA-AC-ACATT----GTGA-CGTCATTCTA-TTG----TTT-GTAACATCAT--GGATTTGAAACGTTT-CAA
gi|3 : cacacatcggaccaagacacgtgtacataagcaacttatccatgaatcagaatacagaaaaaccatactcattgaacgtgtacacatatgcgtgaacgaataactctcagtcattcctctatataaactttatacggacggtgtagtggaaaggagagcgaaagaaaaacTTTTATACAGTTTTT-A---------AAACCAACATTGAACA-GTTT-T--ATTTAAAA----TCGCAGGTAAATGATGCGAGCTATT----AACTGTGTT-AACTATAAACGTTTTTGTA---CAACGACACTATTGACAGTTT
gi|1 : cacacttcggaccaggatatgtatataaccggaatacaaaagaaaatcaaactcagtcaacatctagacatatgcgggaacggataattctgtcattcctctattatacaaactttatacggacggtgcactggaaagaagaaatacatTTTTACACAGTTTTT-ATACAGACATAA-TTA-CATTAAA-A-TTTTA---ACTTGAAATATACTGAATGTAAATGGTGTGGGTTATT----TACTGTGCTTAGCCAT----GTTTTT-TAACCCAA-GACAACATTGAATGTTCCCTG-TATAT-GCATTCATTGTAAATGTCATTC-G---------TCA----TGTCATGAAAATGT--AATG-TTACAATATGTCACTT------TATTTAAAATGTATAACATCTGATGATC-AAA-ATGAAAGTGCTC-ATG------TT----TTAAA--------CC----TGTG-TTAT--------gatatttagtaatttctcatttccggtgtaattaatacatgattaatgaattgaatatacatgtatagtatatgtact
gi|5 : ggaagatgaacttaatagttaatctcaagatacatgcaggaatggagattttttcatcacacctaatgaatggtgtactggaaaggaaacagaaggaaaattgTTCCCCGATA-ACTGTTTT----ATGA-CGTCGTTT-ACGTGAAATTTCATAAACGCCTT-----TATG-AACA-T---GAG--ATTACTTCAAACAATCTCAAAATGTAA--CGCCTGAAGATT-AAA-ATGAAAGCGCTTTGCG------TT----C---AAATTTTAACTTTGGTGTG-TTGT--------TTGATTTATTTCTTTGAA------------------TAT---TTTA-TACCGGATACTTTGAT
gi|6 : taacgttaatccttAAATATGTAACGCCTGAAGATTGAAA-ATGAAAGCGCTT-GCGTTAAAATT----T---AACT-----TT---GTGTG-TTGTTTGATTTATT--------TCTTTGAAtcttagaaatttcaatttatttatattatatatatat
gi|9 : taacgttaaatccttttcccgataactgtttatgacgtcgtaattacgtgaaaatttcataacgcctttatgacgggagattacttcaaaacaatctcaAAATGTAA--CGCCTGAAGATTTAAACATGAAAGCGCTT-GCG------TT----C---A--------t
gi|15 : atagtctcaTGTAAAATGTCTGAAGATC-AAA-GTGAAATTACTT-GCG------TTTTAAT---A--------CT----TGTG-CTaattttaactttgtgtgttgttctgatttatttctttaa
gi|12 : T----T---A--------CT----TGTG-TTGTCTA-----TT--------TCTTTGAAATACAATTA--TT-TTTGTATAT-TTTATTGCCGGACACTG-GATACATTATTTAA
gi|13 : ---A--------CT---GTATGTCTAT--------TT---------CTTTGAAA------TAACTTATTTGTAT---TTTATTGCC-GACACTG---TACATTATTTAAttt
gi|16 : T-TTTGTATA--TTTATTGCCGGACACTGTGATACATTATTTAA
gi|17 : taTATGTATATTTATTGCCGGACACTGTGATACAtttg
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): ATTTCAAAACAATTTTAAAATGTAATGTCAAAAGATTTTTAAAGCTTGCATTATAAGATTTTAACTGTGTGTGGGAGGGGGGTGTATTGCTTTTAATATTTCACACCAGACATTGTGAAATTTCATTTCATTTGACGTATATATATG
Unaligned ( gi|8 ): TAACGTTAAATCATTTTCTCTATATCTGTTTATGACGTCGTAATAACGTGAAATTTCATAAGCCCTTTATGATGTATGATTCCTTCAAAACAATTTCAAAATGTAACGCCTGAAGATTTACAATGAAAGC
Unaligned ( gi|10 ): AAATTATTTCAAAAAGTTAAAACATGTCACGCTGGGATTAAATGAAAGCTACTGGTAAAATTTTTACTTTGTGTGTTGTTGTTTTTTTTTTG
Unaligned ( gi|11 ): GTATTATGAGTAGAATACGCGTATTAAATGTGAAAATTATGACGTGAGACTACTTTAAAACAATCTCAAAATGTAAAGCCT
Unaligned ( gi|14 ): AACAATCACAAAATGTAACGCCTGAACTTTGTGTGTTGTTTGATTTATTTCTTTGAATATTT
Alignments
lowQualScore : 2 111 222222 1 2222 2222 2222 1 1 1 111 2 1 111 1111 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2222 1111 6666666666666666666666666666666666666666666666666666666 11 444444
lowQualScore : 0 777 888888 2 2 0 0000 1 1111 3 1111 0 0 0 3 2 2 777 0 0 88 444 6666 6 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 55 0000 2222 5 5 1 4444444444444444444444444444444444444444444444444444444 77 1 11 555555 6 6 7 7
lowQualScore : . ... ...... . . . .... . .... . .... . . . . . . ... . . .. ... .... . ............................................................................................. .. .... .... . . . ....................................................... .. . .. ...... . . . .
lowQualScore : 0 555 222222 0 5 0 2222 0 2222 2 2222 0 0 0 2 5 5 555 0 0 88 000 6666 7 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 55 0000 8888 0 7 7 3333333333333333333333333333333333333333333333333333333 99 4 00 000000 7 7 3 3
consensus : ATTTTATACAGTTTTTGAAAC---CA-----ACATTGAACA-TTTTAT--ATTTGAAAT----CGCATGTAAATGATGCGAGCTATT----AACTGTG-TT-AA-CTATAAACGTTTTTGTA---CAACG-ACACTATTGACAGTTTCCCG-ATA---ACTGCATTGTGA-CGTCGT---T--C--G-TG-----TTCAT-A--ACGTCATGGA-----TATG-AACGTT-CGANATG---TCACTTC------------AAAAC-----AATCTCAAAATGTA-AACGCCTGAAGA-TT-AAA-ATGAAAGCGC-TTGCG------TT----T--------A----------CT---GTGTGTTGTT----TT--T--TTCTTTGAAA--TACC----TT-TTTGTATAT-TTTATTGCCGGACACTGTGATACATTATTTAA
Reference ( family-4544 ) : ATTTTATACAGTTTTT-AAAC---CA-----ACATCGAACA-TTTTAT--ATTTNAAAT----CGCATGTAAATGATGCGAGCTATT----AACTGTG-TT-AA-CTATAAACGTTTTTGTA---CAA-G-ACACTATTGACAGTTCCCCG-ATA---AC-GCATTGTGA-CGTCGT---T--C--G-TG-----TTCA--A--ACGTCATGGA-----TNTG-AACGTT-CGANATG---TCACTTC------------AAA-C-----ANNCTCAAAATGTAAAACGCCTGAAGA-TT-AAA-ATGAAAGCGC-TTGCG------TT----T--------A----------CT---GTGTGTTGTT--------T--TTCTTTGAAA--TA------TT-TTTGTATAT-TTTATTGCCGGACACTGTGATACATTATTTAA
gi|1 : TTTTACACAGTTTTT-ATACAGACATAATTACATTAAA-A-TTTTA---ACTTGAAATATACTGAATGTAAATGGTGTGGGTTATT----TACTGTGCTT-AG-CCAT----GTTTTT-TAACCCAA-G-ACAACATTGAATGTTCCCTGTATATGCAT-TCATTGTAAATGTCAT---T--C--G-T--------CA------TGTCATGAA-----AATGTAATGTTACAATATG---TCACTTT------------A------------TTTAAAATGTATAACATCTGATGA-TC-AAA-ATGAAAGTGC-TCATG------TT----TTAA-----A----------CC----TGTGTTAT
gi|11 : ggaagatgaacttaatagttaatctcaagatacatgcaggaatggagattttttcatcacacctaatgaatggtgtactggaaaggaaacagaaggaaaattgA-----TGTG-AAAATTATGACGTGAGACTACTTT------------AAAAC-----AATCTCAAAATGTAAA--GCCT
gi|12 : gtattatgagtagaatacgcgtattaaT----T--------A----------CT----TGTGTTGTC--------TATTTCTTTGAAA--TACAATTATT-TTTGTATAT-TTTATTGCCGGACACTG-GATACATTATTTAA
gi|13 : --------A----------CT---GTATGTC-TA--------T--TTCTTTGAAA--TAAC----TTATTTGTAT---TTTATTGCC-GACACTG---TACATTATTTAAttt
gi|14 : AA-C-----AATCACAAAATGT--AACGCCTGAA-------------------C-TT------------------------------------T---GTGTGTTGTTTGATTTA-T--TTCTTTG-AA--TA------TT-T
gi|15 : TGTAAAATGTCTGAAGA-TC-AAA-GTGAAATTAC-TTGCG------TTTTAAT--------A----------CT----TGTGCT
gi|16 : T-TTTGTATAT-TT-ATTGCCGGACACTGTGATACATTATTTAA
gi|17 : taTGTATAT-TT-ATTGCCGGACACTGTGATACAtttg
gi|2 : taATTTAATACAGCTTTTGAAAC---CA-----ACATCGAACAGTTTTATTTATTTTAAGT----TGCATGTAAATGATGCGAGCTATTTTAAAATTGTC-TT-AAACTACAAACTTTTTTGTA---CAA-GGATACTATTGACAGTTTCCTG-AAA---AC-ACATTGTGA-CGTCAT---T--CTAT-TG-----TTTGT-A--ACATCATGGA-----TTTGAAACGTT-
gi|3 : cacacatcggaccaagacacgtgtacataagcaacttatccatgaatcagaatacagaaaaaccatactcattgaacgtgtacacatatgcgtgaacgaataactctcagtcattcctctatataaactttatacggacggtgtagtggaaaggagagcgaaagaaaaacTTTTATACAGTTTTTAAAAC---CA-----ACATTGAACA-GTTT-T--ATTTAAAAT----CGCAGGTAAATGATGCGAGCTATT----AACTGTG-TT-AA-CTATAAACGTTTTTGTA---CAACG-ACACTATTGACAGTTtcaa
gi|4 : cacacttcggaccaggatatgtatataaccggaatacaaaagaaaatcaaactcagtcaacatctagacatatgcgggaacggataattctgtcattcctctattatacaaactttatacggacggtgcactggaaagaagaaatacatATTTTATACAGTTTTT-AAAC---CA------CATTAAACA-TTTTAT--ATTTGAAAC----CGCATATAA-TGATGCGAGCTATT----AACTGTG-TTTAA-CTATAAAAGTTTTTGTA---CAACG-ACACTATTGACAGTTTCCTG--TA---AC-GCATTGTGA-CGTCAT---T--C--AATG-----TTCA--ATAACGTCATAGA-----TTTG-AACGTT-CAAC--G---TCACTTGTTTTTAAATGTAAAA-CGTCTGAGGATCAAA--------------------------ATGAAAGCGC-TTACG------TT----T--------A----------CT---GTGTGCTA-T--------T--TTCTTTGAAAATTACC----TT-TTTGTATATATTTATTGCCGGACACTGTGATACATTATTTAAtgatatttagtaatttctcatttccggtgtaattaatacatgattaatgaattgaatatacatgtatagtatatgtact
gi|5 : TTCCCCG-ATA---ACTGTTTTATGA-CGTCGT---TTAC--G-TGAAAT-TTCATAA--ACGCCTT--------TATG-AACAT---GAGAT-----TACTTC------------AAA-C-----AATCTCAAAATGTAA--CGCCTGAAGA-TT-AAA-ATGAAAGCGCTTTGCG------TT----CAAATTTTAA----------CTTTGGTGTGTTGTT--------T--GATTT----A--TT------TC-TTTGAATAT-TTTA-TACCGGATACTTTGAT
gi|6 : taacgttaatccttTTTCCCG-ATA---ACTGT-TTATGA-CGTCGTAATTA-C--G-TGAAAATTTCAT-A--ACGCCTT--------TATG-A------CGGGAGA---TTACTTC------------AAAAC-----AATCTCAAAATATGTAACGCCTGAAGA-TTGAAA-ATGAAAGCGC-TTGCGTTAAAATT----T--------AACT-------TT---GTGTGTTGTTTGATTTA-T--TTCTTTGAAtcttagaaatttcaatttatttatattatatatatat
gi|8 : taacgttaaatcctTTATGA-CGTCGTAA-TAAC--G-TG--------A--A--ATTTCATAAGCCCTTTATG-A-TGTA-TGAT------TC-CTTC------------AAAAC-----AATTTCAAAATGT--AACGCCTGAAGATTT-ACA-ATGAAAGCt
gi|9 : taacgttaaatcattttctctatatctgtA-T-----AGTCTCAAAATGT--AACGCCTGAAGATTT-AAACATGAAAGCGC-TTGCG------TT----C--------AAATTTTAACTTT---GTGTGTTGTTCTGATTTAT--TTCTTTAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATTTCAAAACAATTTTAAAATGTAATGTCAAAAGATTTTTAAAGCTTGCATTATAAGATTTTAACTGTGTGTGGGAGGGGGGTGTATTGCTTTTAATATTTCACACCAGACATTGTGAAATTTCATTTCATTTGACGTATATATATG
Unaligned ( gi|10 ): AAATTATTTCAAAAAGTTAAAACATGTCACGCTGGGATTAAATGAAAGCTACTGGTAAAATTTTTACTTTGTGTGTTGTTGTTTTTTTTTTG
Alignments
lowQualScore : 333333 111 1 2222 2222 2222 1 1 1 111 111 1111 777777777777777777777777777777777777777777777777777777777777 11111 66666666666666666666666666666666666666 4444444444444 11 222222
lowQualScore : 111111 777 2 0 0000 0 1111 3 1111 0 0 0 3 2 2 777 8 0 5 000 8888 6 666666666666666666666666666666666666666666666666666666666666 1 1 44 0 4 77777 1 4 8 55 4 5 0 66666666666666666666666666666666666666 7777777777777 33 111111 8 3 6 7 7
lowQualScore : ...... ... . . .... . .... . .... . . . . . . ... . . . ... .... . ............................................................ . . .. . . ..... . . . .. . . . ...................................... ............. .. ...... . . . . .
lowQualScore : 555555 000 5 0 2222 2 2222 2 2222 0 0 0 2 5 5 555 8 4 7 000 0000 7 777777777777777777777777777777777777777777777777777777777777 7 4 77 9 4 44444 0 4 9 22 4 0 2 11111111111111111111111111111111111111 0000000000000 88 888888 0 5 7 3 3
consensus : ATTTTATACAGTTTTT-----GAAACCA--ACATTGAACA-TTTTAT--ATTTGAAAT----CGCATGTAAATGATGCGAGCTATT----AACTGTG-TT-AA-CTATAAACGTTTTTGTA---CAACGACACTATTGACAGTTTCCCG-ATA---ACTGCATTGTGA-CGTCGT---T--C--G-TGAAA--TTCA-TAA---CGTCATGG-ATATG-AACGTT-CGAGACGTTACTTCAAAACAATCTCAAA-ATGTA-AA-CGCCTGAAGA-TT-AAA-ATGAAAGC-GC-TTGCG------TT----T--------A----------CT---GTGTGTTGT--TT--T------TTTCTTTGAAA--TACC----TT-TTTGTATAT-TTTATTGCCGGACACTGTGATACATTATTTAA
Reference ( family-4544 ) : ATTTTATACAGTTTTT-----GAAACCA--ACATTGAACA-TTTTAT--ATTTGAAAT----CGCATGTAAATGATGCGAGCTATT----AACTGTG-TT-AA-CTATAAACGTTTTTGTA---CAACGACACTATTGACAGTTTCCCG-ATA---ACTGCATTGTGA-CGTCGT---T--C--G-TG-----TTCA-TAA---CGTCATGG-ATATG-AACGTT-CGANATGTCACTTCAAAACAATCTCAAA-ATGTA-AA-CGCCTGAAGA-TT-AAA-ATGAAAGC-GC-TTGCG------TT----T--------A----------CT---GTGTGTTGT--TT--T------TTTCTTTGAAA--TACC----TT-TTTGTATAT-TTTATTGCCGGACACTGTGATACATTATTTAA
gi|1 : TTTTACACAGTTTTTATACAGACATAATTACATTAAA-A-TTTTA---ACTTGAAATATACTGAATGTAAATGGTGTGGGTTATT----TACTGTGCTT-AG-CCAT----GTTTTT-TAACCCAA-GACAACATTGAATGTTCCCTGTATATGCATT-CATTGTAAATGTCAT---T--C--G-T--------CA-T------GTCATGA-AAATGTAATGTTACAATATGTCACTTTA-------TTTAAA-ATGTATAA-CATCTGATGA-TC-AAA-ATGAAAGT-GC-TCATG------TT----TTAA-----A----------CC----TGTGTTAT--
gi|10 : ggaagatgaacttaatagttaatctcaagatacatgcaggaatggagattttttcatcacacctaatgaatggtgtactggaaaggaaacagaaggaaaattgTTATTTCAAAA-AGT-TAAAACATGTC-A--CGC-TGG-GA-TT-AAA--TGAAAGCTAC-TGGTAAAATT-TT----T--------A----------CTTT-GTGTGTTGTTGTT--T------TTTTTTTG
gi|11 : aaaTATG-A-CGT---GAGAC--TACTTTAAAACAATCTCAAA-ATGTA-AA--GCCT
gi|12 : gtattatgagtagaatacgcgtattaaatgtgaaaatT----T--------A----------CT----TGTGTTGT--CT--A------TTTCTTTGAAA--TACAATTATT-TTTGTATAT-TTTATTGCCGGACACTG-GATACATTATTTAA
gi|13 : --------A----------CT---GTATGTC-----T--A------TTTCTTTGAAA--TAAC----TTATTTG--TAT-TTTATTGCC-GACACTG---TACATTATTTAAttt
gi|14 : AACAATCACAAA-ATGT--AA-CGCCTGAA--------------------C-TT------------------------------------T---GTGTGTTGT--TTGATTTA---TTTCTTTGAA
gi|15 : TGTA-AAATGTCTGAAGA-TC-AAA-GTGAAATT-AC-TTGCG------TTTTAAT--------A----------CT----TGTGCTtattt
gi|16 : T-TTTGTATAT-TT-ATTGCCGGACACTGTGATACATTATTTAA
gi|17 : taTGTATAT-TT-ATTGCCGGACACTGTGATACAtttg
gi|2 : taATTTAATACAGCTTTT-----GAAACCA--ACATCGAACAGTTTTATTTATTTTAAGT----TGCATGTAAATGATGCGAGCTATTTTAAAATTGTC-TT-AAACTACAAACTTTTTTGTA---CAAGGATACTATTGACAGTTTCCTG-AAA---AC-ACATTGTGA-CGTCAT---T--CTAT-TG-----TTTG-TAA---CATCATGG-ATTTGAAACGTT-
gi|3 : cacacatcggaccaagacacgtgtacataagcaacttatccatgaatcagaatacagaaaaaccatactcattgaacgtgtacacatatgcgtgaacgaataactctcagtcattcctctatataaactttatacggacggtgtagtggaaaggagagcgaaagaaaaacTTTTATACAGTTTTT-----AAAACCA--ACATTGAACA-GTTT-T--ATTTAAAAT----CGCAGGTAAATGATGCGAGCTATT----AACTGTG-TT-AA-CTATAAACGTTTTTGTA---CAACGACACTATTGACAGTTT---G-ATA---tcaa
gi|4 : cacacttcggaccaggatatgtatataaccggaatacaaaagaaaatcaaactcagtcaacatctagacatatgcgggaacggataattctgtcattcctctattatacaaactttatacggacggtgcactggaaagaagaaatacatATTTTATACAGTTTTT------AAACCA---CATTAAACA-TTTTAT--ATTTGAAAC----CGCATATAA-TGATGCGAGCTATT----AACTGTG-TTTAA-CTATAAAAGTTTTTGTA---CAACGACACTATTGACAGTTTCCTG--TA---AC-GCATTGTGA-CGTCAT---T--C--AATG-----TTCAATAA---CGTCATAG-ATTTG-AACGTT-CAAC--GTCACTT-------GTTTTTAA-ATGTA-AAACGTCTGAGGA-TC-AAA-ATGAAAGC-GC-TTACG------TT----T--------A----------CT---GTGTGCTA-------T------TTTCTTTGAAAATTACC----TT-TTTGTATATATTTATTGCCGGACACTGTGATACATTATTTAAtttagtaatttctcatttccggtgtaattaatacatgattaatgaattgaatatacatgtatagtatatgtact
gi|5 : TTCCCCG-ATA---ACTGTTTTATGA-CGTCGT---TTAC--G-TGAAAT-TTCA-TAAA--CGCCTT----TATG-AACAT---GAGAT--TACTTCAAA-CAATCTCAAA-ATGTA-A--CGCCTGAAGA-TT-AAA-ATGAAAGC-GCTTTGCG------TT----CAAATTTTAA----------CTTTGGTGTGTTGT--TT--G------ATT----------TATT----TC-TTTGAATAT-TTTA-TACCGGATACTTTGAT
gi|6 : taacgttaatccttTTTCCCG-ATA---ACTGT-TTATGA-CGTCGTAATTA-C--G-TGAAAATTTCA-TAA---CGCCTT----TATG-A------CGGGAGATTACTTCAAAACAATCTCAAA-ATATGTAA-CGCCTGAAGA-TTGAAA-ATGAAAGC-GC-TTGCGTTAAAATT----T--------AACT-------TT---GTGTGTTGT--TTGATTTA---TTTCTTTGAAtcttagaaatttcaatttatttatattatatatatat
gi|8 : taacgttaaatcctCATTTTCTCT-ATA---TCTGT-TTATGA-CGTCGTAA-TAAC--G-TGAAAT-TTCA-TAAGCCCTTTATGATGTATG-A---TT-C---------CTTCAAAACAATTTCAAA-ATGT--AA-CGCCTGAAGATTT-ACA-ATGAAAGC-t
gi|9 : taacgttaaatATAGTCTCAAA-ATGTA-A--CGCCTGAAGA-TTTAAACATGAAAGC-GC-TTGCG------TT----C--------AAATTTTAACTTT---GTGTGTTGT--TC--TGATTTATTTCTTTAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATTTCAAAACAATTTTAAAATGTAATGTCAAAAGATTTTTAAAGCTTGCATTATAAGATTTTAACTGTGTGTGGGAGGGGGGTGTATTGCTTTTAATATTTCACACCAGACATTGTGAAATTTCATTTCATTTGACGTATATATATG
Alignments
lowQualScore : 333333 111 1 2222 2222 2222 1 1 1 111 111 1111 66666666666666666666666666666666666666666666666666666666 11111 66666666666666666666666666666666666666 4444444444444 11 222222
lowQualScore : 111111 777 2 0 0000 0 1111 3 1111 0 0 0 3 2 2 777 8 0 5 000 8888 6 00000000000000000000000000000000000000000000000000000000 1 1 44 0 4 77777 1 4 8 55 4 5 0 66666666666666666666666666666666666666 7777777777777 33 111111 8 3 6 7 7
lowQualScore : ...... ... . . .... . .... . .... . . . . . . ... . . . ... .... . ........................................................ . . .. . . ..... . . . .. . . . ...................................... ............. .. ...... . . . . .
lowQualScore : 555555 000 5 0 2222 2 2222 2 2222 0 0 0 2 5 5 555 8 4 7 000 0000 7 77777777777777777777777777777777777777777777777777777777 7 4 77 9 4 44444 0 4 9 22 4 0 2 11111111111111111111111111111111111111 0000000000000 88 888888 0 5 7 3 3
consensus : ATTTTATACAGTTTTT-----GAAACCA--ACATTGAACA-TTTTAT--ATTTGAAAT----CGCATGTAAATGATGCGAGCTATT----AACTGTG-TT-AA-CTATAAACGTTTTTGTA---CAACGACACTATTGACAGTTTCCCG-ATA---ACTGCATTGTGA-CGTCGT---T--C--G-TGAAA--TT-CA-TAA-CGCCNTGGATATG-AACGTT-CGAGACGTTACTTCAAAACAATCTCAAA-ATGTA-AA-CGCCTGAAGA-TT-AAA-ATGAAAGC-GC-TTGCG------TT----T--------A----------CT---GTGTGTTGT--TT--T------TTTCTTTGAAA--TACC----TT-TTTGTATAT-TTTATTGCCGGACACTGTGATACATTATTTAA
Reference ( family-4544 ) : ATTTTATACAGTTTTT-----GAAACCA--ACATTGAACA-TTTTAT--ATTTGAAAT----CGCATGTAAATGATGCGAGCTATT----AACTGTG-TT-AA-CTATAAACGTTTTTGTA---CAACGACACTATTGACAGTTTCCCG-ATA---ACTGCATTGTGA-CGTCGT---T--C--G-TGAAA--TT-CA-TAA-CGTCATGGATATG-AACGTT-CGAGACGTTACTTCAAAACAATCTCAAA-ATGTA-AA-CGCCTGAAGA-TT-AAA-ATGAAAGC-GC-TTGCG------TT----T--------A----------CT---GTGTGTTGT--TT--T------TTTCTTTGAAA--TACC----TT-TTTGTATAT-TTTATTGCCGGACACTGTGATACATTATTTAA
gi|1 : TTTTACACAGTTTTTATACAGACATAATTACATTAAA-A-TTTTA---ACTTGAAATATACTGAATGTAAATGGTGTGGGTTATT----TACTGTGCTT-AG-CCAT----GTTTTT-TAACCCAA-GACAACATTGAATGTTCCCTGTATATGCATT-CATTGTAAATGTCAT---T--C--G-T---------CA-T----GTCATGAAAATGTAATGTTACAATATGTCACTTTA-------TTTAAA-ATGTATAA-CATCTGATGA-TC-AAA-ATGAAAGT-GC-TCATG------TT----TTAA-----A----------CC----TGTGTTAT--
gi|10 : ggaagatgaacttaatagttaatctcaagatacatgcaggaatggagattttttcatcacacctaatgaatggtgtactggaaaggaaacagaaggaaaattgTTATTTCAAAA-AGT-TAAAACATGTC-A--CGC-TGG-GA-TT-AAA--TGAAAGCTAC-TGGTAAAATT-TT----T--------A----------CTTT-GTGTGTTGTTGTT--T------TTTTTTTG
gi|11 : aaaTATG-A-CGT---GAGAC--TACTTTAAAACAATCTCAAA-ATGTA-AA--GCCT
gi|12 : gtattatgagtagaatacgcgtattaaatgtgaaaatT----T--------A----------CT----TGTGTTGT--CT--A------TTTCTTTGAAA--TACAATTATT-TTTGTATAT-TTTATTGCCGGACACTG-GATACATTATTTAA
gi|13 : --------A----------CT---GTATGTC-----T--A------TTTCTTTGAAA--TAAC----TTATTTG--TAT-TTTATTGCC-GACACTG---TACATTATTTAAttt
gi|14 : AACAATCACAAA-ATGT--AA-CGCCTGAA--------------------C-TT------------------------------------T---GTGTGTTGT--TTGATTTA---TTTCTTTGAA
gi|15 : TGTA-AAATGTCTGAAGA-TC-AAA-GTGAAATT-AC-TTGCG------TTTTAAT--------A----------CT----TGTGCTtattt
gi|16 : T-TTTGTATAT-TT-ATTGCCGGACACTGTGATACATTATTTAA
gi|17 : taTGTATAT-TT-ATTGCCGGACACTGTGATACAtttg
gi|2 : taATTTAATACAGCTTTT-----GAAACCA--ACATCGAACAGTTTTATTTATTTTAAGT----TGCATGTAAATGATGCGAGCTATTTTAAAATTGTC-TT-AAACTACAAACTTTTTTGTA---CAAGGATACTATTGACAGTTTCCTG-AAA---AC-ACATTGTGA-CGTCAT---T--CTAT-TG-----TT-TG-TAA-CATCATGGATTTGAAACGTT-
gi|3 : cacacatcggaccaagacacgtgtacataagcaacttatccatgaatcagaatacagaaaaaccatactcattgaacgtgtacacatatgcgtgaacgaataactctcagtcattcctctatataaactttatacggacggtgtagtggaaaggagagcgaaagaaaaacTTTTATACAGTTTTT-----AAAACCA--ACATTGAACA-GTTT-T--ATTTAAAAT----CGCAGGTAAATGATGCGAGCTATT----AACTGTG-TT-AA-CTATAAACGTTTTTGTA---CAACGACACTATTGACAGTTT---G-ATA---tcaa
gi|4 : cacacttcggaccaggatatgtatataaccggaatacaaaagaaaatcaaactcagtcaacatctagacatatgcgggaacggataattctgtcattcctctattatacaaactttatacggacggtgcactggaaagaagaaatacatATTTTATACAGTTTTT------AAACCA---CATTAAACA-TTTTAT--ATTTGAAAC----CGCATATAA-TGATGCGAGCTATT----AACTGTG-TTTAA-CTATAAAAGTTTTTGTA---CAACGACACTATTGACAGTTTCCTG--TA---AC-GCATTGTGA-CGTCAT---T--C--AATG-----TT-CAATAA-CGTCATAGATTTG-AACGTT-CAA--CGTCACTT-------GTTTTTAA-ATGTA-AAACGTCTGAGGA-TC-AAA-ATGAAAGC-GC-TTACG------TT----T--------A----------CT---GTGTGCTA-------T------TTTCTTTGAAAATTACC----TT-TTTGTATATATTTATTGCCGGACACTGTGATACATTATTTAAtttagtaatttctcatttccggtgtaattaatacatgattaatgaattgaatatacatgtatagtatatgtact
gi|5 : TTCCCCG-ATA---ACTGTTTTATGA-CGTCGT---TTAC--G-TGAAA--TTTCA-TAAACGCCTT---TATG-AACAT---GAGA--TTACTTCAAA-CAATCTCAAA-ATGTA-A--CGCCTGAAGA-TT-AAA-ATGAAAGC-GCTTTGCG------TT----CAAATTTTAA----------CTTTGGTGTGTTGT--TT--G------ATT----------TATT----TC-TTTGAATAT-TTTA-TACCGGATACTTTGAT
gi|6 : taacgttaatccttTTTCCCG-ATA---ACTGT-TTATGA-CGTCGTAATTA-C--G-TGAAAATTT-CA-TAA-CGCCTT---TATG-A------CGGGAGATTACTTCAAAACAATCTCAAA-ATATGTAA-CGCCTGAAGA-TTGAAA-ATGAAAGC-GC-TTGCGTTAAAATT----T--------AACT-------TT---GTGTGTTGT--TTGATTTA---TTTCTTTGAAtcttagaaatttcaatttatttatattatatatatat
gi|8 : taacgttaaatcctCATTTTCTCT-ATA---TCTGT-TTATGA-CGTCGTAA-TAAC--G-TGAAA--TTTCA-TAA--GCCCTT--TATG-A-TGTA-TGA----TTCCTTCAAAACAATTTCAAA-ATGT--AA-CGCCTGAAGATTT-ACA-ATGAAAGC-t
gi|9 : taacgttaaatATAGTCTCAAA-ATGTA-A--CGCCTGAAGA-TTTAAACATGAAAGC-GC-TTGCG------TT----C--------AAATTTTAACTTT---GTGTGTTGT--TC--TGATTTATTTCTTTAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATTTCAAAACAATTTTAAAATGTAATGTCAAAAGATTTTTAAAGCTTGCATTATAAGATTTTAACTGTGTGTGGGAGGGGGGTGTATTGCTTTTAATATTTCACACCAGACATTGTGAAATTTCATTTCATTTGACGTATATATATG
Alignments
lowQualScore : 333333 111 1 2222 2222 2222 1 1 1 111 111 1111 555555555555555555555 222 333333333333333 11111 66666666666666666666666666666666666666 4444444444444 11 222222
lowQualScore : 111111 777 2 0 0000 0 1111 3 1111 0 0 0 3 2 2 777 8 0 5 000 8888 6 888888888888888888888 6 99 1 555 999999999999999 1 1 44 0 4 77777 1 4 8 55 4 5 0 66666666666666666666666666666666666666 7777777777777 33 111111 8 3 6 7 7
lowQualScore : ...... ... . . .... . .... . .... . . . . . . ... . . . ... .... . ..................... . .. . ... ............... . . .. . . ..... . . . .. . . . ...................................... ............. .. ...... . . . . .
lowQualScore : 555555 000 5 0 2222 2 2222 2 2222 0 0 0 2 5 5 555 8 4 7 000 0000 7 777777777777777777777 7 22 0 888 000000000000000 7 4 77 9 4 44444 0 4 9 22 4 0 2 11111111111111111111111111111111111111 0000000000000 88 888888 0 5 7 3 3
consensus : ATTTTATACAGTTTTT-----GAAACCA--ACATTGAACA-TTTTAT--ATTTGAAAT----CGCATGTAAATGATGCGAGCTATT----AACTGTG-TT-AA-CTATAAACGTTTTTGTA---CAACGACACTATTGACAGTTTCCCG-ATA---ACTGCATTGTGA-CGTCGT---T--C--G-TGAAA--TT-CA-TAA-CGCCNTGGATATG-AACGTT-CGAGACGTTACTTCAAAACAATCTCAAA-ATGTA-AA-CGCCTGAAGA-TT-AAA-ATGAAAGC-GC-TTGCG------TT----T--------A----------CT---GTGTGTTGT--TT--T------TTTCTTTGAAA--TACC----TT-TTTGTATAT-TTTATTGCCGGACACTGTGATACATTATTTAA
Reference ( family-4544 ) : ATTTTATACAGTTTTT-----GAAACCA--ACATTGAACA-TTTTAT--ATTTGAAAT----CGCATGTAAATGATGCGAGCTATT----AACTGTG-TT-AA-CTATAAACGTTTTTGTA---CAACGACACTATTGACAGTTTCCCG-ATA---ACTGCATTGTGA-CGTCGT---T--C--G-TGAAA--TT-CA-TAA-CGCCNTGGATATG-AACGTT-CGAGACGTTACTTCAAAACAATCTCAAA-ATGTA-AA-CGCCTGAAGA-TT-AAA-ATGAAAGC-GC-TTGCG------TT----T--------A----------CT---GTGTGTTGT--TT--T------TTTCTTTGAAA--TACC----TT-TTTGTATAT-TTTATTGCCGGACACTGTGATACATTATTTAA
gi|1 : TTTTACACAGTTTTTATACAGACATAATTACATTAAA-A-TTTTA---ACTTGAAATATACTGAATGTAAATGGTGTGGGTTATT----TACTGTGCTT-AG-CCAT----GTTTTT-TAACCCAA-GACAACATTGAATGTTCCCTGTATATGCATT-CATTGTAAATGTCAT---T--C--G-T---------CA-T----GTCATGAAAATGTAATGTTACAATATGTCACTTTA-------TTTAAA-ATGTATAA-CATCTGATGA-TC-AAA-ATGAAAGT-GC-TCATG------TT----TTAA-----A----------CC----TGTGTTAT--
gi|10 : ggaagatgaacttaatagttaatctcaagatacatgcaggaatggagattttttcatcacacctaatgaatggtgtactggaaaggaaacagaaggaaaattgTTATTTCAAAA-AGT-TAAAACATGTC-A--CGC-TGG-GA-TT-AAA--TGAAAGCTAC-TGGTAAAATT-TT----T--------A----------CTTT-GTGTGTTGTTGTT--T------TTTTTTTG
gi|11 : aaaTATG-A-CGT---GAGAC--TACTTTAAAACAATCTCAAA-ATGTA-AA--GCCT
gi|12 : gtattatgagtagaatacgcgtattaaatgtgaaaatT----T--------A----------CT----TGTGTTGT--CT--A------TTTCTTTGAAA--TACAATTATT-TTTGTATAT-TTTATTGCCGGACACTG-GATACATTATTTAA
gi|13 : --------A----------CT---GTATGTC-----T--A------TTTCTTTGAAA--TAAC----TTATTTG--TAT-TTTATTGCC-GACACTG---TACATTATTTAAttt
gi|14 : AACAATCACAAA-ATGT--AA-CGCCTGAA--------------------C-TT------------------------------------T---GTGTGTTGT--TTGATTTA---TTTCTTTGAA
gi|15 : TGTA-AAATGTCTGAAGA-TC-AAA-GTGAAATT-AC-TTGCG------TTTTAAT--------A----------CT----TGTGCTtattt
gi|16 : T-TTTGTATAT-TT-ATTGCCGGACACTGTGATACATTATTTAA
gi|17 : taTGTATAT-TT-ATTGCCGGACACTGTGATACAtttg
gi|2 : taATTTAATACAGCTTTT-----GAAACCA--ACATCGAACAGTTTTATTTATTTTAAGT----TGCATGTAAATGATGCGAGCTATTTTAAAATTGTC-TT-AAACTACAAACTTTTTTGTA---CAAGGATACTATTGACAGTTTCCTG-AAA---AC-ACATTGTGA-CGTCAT---T--CTAT-TG-----TT-TG-TAA-CATCATGGATTTGAAACGTT-
gi|3 : cacacatcggaccaagacacgtgtacataagcaacttatccatgaatcagaatacagaaaaaccatactcattgaacgtgtacacatatgcgtgaacgaataactctcagtcattcctctatataaactttatacggacggtgtagtggaaaggagagcgaaagaaaaacTTTTATACAGTTTTT-----AAAACCA--ACATTGAACA-GTTT-T--ATTTAAAAT----CGCAGGTAAATGATGCGAGCTATT----AACTGTG-TT-AA-CTATAAACGTTTTTGTA---CAACGACACTATTGACAGTTT---G-ATA---tcaa
gi|4 : cacacttcggaccaggatatgtatataaccggaatacaaaagaaaatcaaactcagtcaacatctagacatatgcgggaacggataattctgtcattcctctattatacaaactttatacggacggtgcactggaaagaagaaatacatATTTTATACAGTTTTT------AAACCA---CATTAAACA-TTTTAT--ATTTGAAAC----CGCATATAA-TGATGCGAGCTATT----AACTGTG-TTTAA-CTATAAAAGTTTTTGTA---CAACGACACTATTGACAGTTTCCTG--TA---AC-GCATTGTGA-CGTCAT---T--C--AATG-----TT-CAATAA-CGTCATAGATTTG-AACGTT-CAA--CGTCACTT-------GTTTTTAA-ATGTA-AAACGTCTGAGGA-TC-AAA-ATGAAAGC-GC-TTACG------TT----T--------A----------CT---GTGTGCTA-------T------TTTCTTTGAAAATTACC----TT-TTTGTATATATTTATTGCCGGACACTGTGATACATTATTTAAtttagtaatttctcatttccggtgtaattaatacatgattaatgaattgaatatacatgtatagtatatgtact
gi|5 : TTCCCCG-ATA---ACTGTTTTATGA-CGTCGT---TTAC--G-TGAAA--TTTCA-TAAACGCCTT---TATG-AACAT---GAGA--TTACTTCAAA-CAATCTCAAA-ATGTA-A--CGCCTGAAGA-TT-AAA-ATGAAAGC-GCTTTGCG------TT----CAAATTTTAA----------CTTTGGTGTGTTGT--TT--G------ATT----------TATT----TC-TTTGAATAT-TTTA-TACCGGATACTTTGAT
gi|6 : taacgttaatccttTTTCCCG-ATA---ACTGT-TTATGA-CGTCGTAATTA-C--G-TGAAAATTT-CA-TAA-CGCCTT---TATG-A------CGGGAGATTACTTCAAAACAATCTCAAA-ATATGTAA-CGCCTGAAGA-TTGAAA-ATGAAAGC-GC-TTGCGTTAAAATT----T--------AACT-------TT---GTGTGTTGT--TTGATTTA---TTTCTTTGAAtcttagaaatttcaatttatttatattatatatatat
gi|8 : taacgttaaatcctCATTTTCTCT-ATA---TCTGT-TTATGA-CGTCGTAA-TAAC--G-TGAAA--TTTCA-TAA--GCCCTT--TATG-A-TGTA-TGA----TTCCTTCAAAACAATTTCAAA-ATGT--AA-CGCCTGAAGATTT-ACA-ATGAAAGC-t
gi|9 : taacgttaaatATAGTCTCAAA-ATGTA-A--CGCCTGAAGA-TTTAAACATGAAAGC-GC-TTGCG------TT----C--------AAATTTTAACTTT---GTGTGTTGT--TC--TGATTTATTTCTTTAA
blockSeqs : G A C G ATTT . A TTAA . T A A C G . G . . TGTT . AATTACGTGAAAATTT A AC A GGA AACGTTCAACG C A AC C AAAA A T G CA T T TTCAAATTTTAACTTTGG TCTGATTTA AT AC A T A T T
blockSeqs : A A C . AT . A . . . . A C G . C . . ACA . AATAACGTGAAATTT . C A AGA ACGTGAGAC T A AC . AAAA A . T G . . TTCAAATTTTAACTTTG TTGATTTA . CC . T . T T
blockSeqs : . . C . T . . . . . . A A G . C . . GCA . TTACGTGAAATTT . C T T AACATGAGA C A AC . GTAA G . . A . . TTAAAATTTAACTTTG TTGATTTA . TT . T . T T
blockSeqs : . . TGT . TCTATTGTT . C T . ACGGGAGA C A AC . AAA A . . A . . AAATTTTTACTTTG CTA . A . . T
blockSeqs : . . TGT . TCAATGTT . . C . ATGTATGA C A AT . CA A . . A . . TTTTAATACT TTG . . . .
blockSeqs : . . . . A . AA A . . A . . TTTACTG TA
blockSeqs : C . AA A . . . . . TG T
blockSeqs : . . AA . . . . .
blockSeqs : AA
blockSeqCons : *** AATTACGTGAAATTT****** C* NGA AACGTGNGA****** AC AA*** TTAAATTTACTTTG************************ TTGA*********
originalCons : ATTTTATACAGTTTTT-----GAAACCA--ACATTGAACA-TTTTAT--ATTTGAAAT----CGCATGTAAATGATGCGAGCTATT----AACTGTG-TT-AA-CTATAAACGTTTTTGTA---CAACGACACTATTGACAGTTTCCCG-ATA---ACTGCATTGTGA-CGTCGT---T--C--G-TGAAA--TT-CA-TAA-CGCCNTGGATATG-AACGTT-CGAGACGTTACTTCAAAACAATCTCAAA-ATGTA-AA-CGCCTGAAGA-TT-AAA-ATGAAAGC-GC-TTGCG------TT----T--------A----------CT---GTGTGTTGT--TT--T------TTTCTTTGAAA--TACC----TT-TTTGTATAT-TTTATTGCCGGACACTGTGATACATTATTTAA
finalCons : ATTTTATACAGTTTTT-----GAAACCA--ACATTGAACA-TTTTAT--ATTTGAAAT----CGCATGTAAATGATGCGAGCTATT----AACTGTG-TT-AA-CTATAAACGTTTTTGTA---CAACGACACTATTGACAGTTTCCCG-ATA---ACTGCATTGTGA-CGTCGTAATTACGTGAAATTT------CA-TAAC-GCCNTNGATATGAACGTGNGA------TTACTTCAAAACAATCTCAAA-ATGTAA---CGCCTGAAGA-TT-AAA-ATGAAAGC-GC-TTGCGTTAAATTTACTTTG------------------------TGTGTTGTTTGA---------TTTCTTTGAAA--TACC----TT-TTTGTATAT-TTTATTGCCGGACACTGTGATACATTATTTAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATTTCAAAACAATTTTAAAATGTAATGTCAAAAGATTTTTAAAGCTTGCATTATAAGATTTTAACTGTGTGTGGGAGGGGGGTGTATTGCTTTTAATATTTCACACCAGACATTGTGAAATTTCATTTCATTTGACGTATATATATG
Alignments
lowQualScore : 333333 111 1 2222 2222 2222 2 1 111 1 2222222222222222 222 111 22222 2222 22 11111111 33333333 33333333333
lowQualScore : 111111 777 2 0 0000 0 1111 3 1111 0 0 3 2 2 777 8 0 5 3 7 1 6 1 7777777777777777 6 77 1 666 444 22 22222 0 0 22 1 88 55 55 8 4 55 5 66 3333 66 88 1 4 66666666 4 11111111 0 55555555555 6 5 5 7 5 5
lowQualScore : ...... ... . . .... . .... . .... . . . . . ... . . . . . . . . ................ . .. . ... ... .. ..... . . .. . .. .. .. . . .. . .. .... .. .. . . ........ . ........ . ........... . . . . . .
lowQualScore : 555555 000 5 0 2222 2 2222 2 2222 0 0 2 5 5 555 8 4 7 5 3 7 3 0 7777777777777777 7 77 0 333 444 00 11111 2 1 33 4 66 00 00 9 4 44 0 99 9999 99 99 9 4 11111111 4 66666666 7 22222222222 7 1 7 1 0 0
consensus : ATTTTATACAGTTTTT-----GAAACCA--ACATTGAACA-TTTTAT--ATTTGAAAT----CGCATGTAAATGATGCGAGCTATT----AACTGTGCTTAA-CTATAAACGTTTTTGTA---CAACGACACTATTGACAGTTTCCCG-ATAACTGCATTATGACGTCGTAAT-TACGTGAAA-T-TTC-GTAA-CGCCNTGGATATG-AACGTGAGA-----TTACTTCAAAACAATCTCAAA--ATG--T--AACGCCTGAAGA-TT-AAA-ATGAAAGCGC-T--TGCGTT---AAATT--TT-ACTTT-GTGT--------GT-TGTT-TG----ATTTCTTTGAAA--TACC----TT-TTTGTATAT-TTTATTGCCGGACACTGTGATACATTATTTAA
Reference ( family-4544 ) : ATTTTATACAGTTTTT-----GAAACCA--ACATTGAACA-TTTTAT--ATTTGAAAT----CGCATGTAAATGATGCGAGCTATT----AACTGTG-TTAA-CTATAAACGTTTTTGTA---CAACGACACTATTGACAGTTTCCCG-ATAACTGCATTGTGACGTCGTAAT-TACGTGAAA-T-TTC-ATAA-CGCCNTNGATATG-AACGTGNGA-----TTACTTCAAAACAATCTCAAA--ATG--T--AACGCCTGAAGA-TT-AAA-ATGAAAGCGC-T--TGCGTT---AAATT--T--ACTTT-GTGT--------GT-TGTT-TG----ATTTCTTTGAAA--TACC----TT-TTTGTATAT-TTTATTGCCGGACACTGTGATACATTATTTAA
gi|1 : TTTTACACAGTTTTTATACAGACATAATTACATTAAA-A-TTTTA---ACTTGAAATATACTGAATGTAAATGGTGTGGGTTATT----TACTGTGCTTAG-CCAT----GTTTTT-TAACCCAA-GACAACATTGAATGTTCCCTGTATA--TGCATT----CATTGTAA---ATGTCA-----TTC-GTCA-TGTCATGAAAATGTAATGTTACAATATGTCACTTTA-------TTTAAA--ATGTAT--AACATCTGATGA-TC-AAA-ATGAAAGTGC-TCATGTTTT---AAA
gi|10 : ggaagatgaacttaatagttaatctcaagatacatgcaggaatggagattttttcatcacacctaatgaatggtgtactggaaaggaaacagaaggaaaattgA-----TTATTTCAAAA-AGT-TAAAAC-ATG--T--CACGC-TGG-GA-TT-AAA--TGAAAGCTA-C--TG-GTA---AAATT--TTTACTTT-GTGT--------GT-TG-T-TG----TTTTTTTTcctgtgttat
gi|11 : aaTATG-A-CGTGAGA-----CTACTTTAAAACAATCTCAAA--ATG--T--AAAGCCTttg
gi|12 : gtattatgagtagaatacgcgtattaaatgtgaaaatT--T--ACTT----GT--------GT-TGTC-T-----ATTTCTTTGAAA--TACAATTATT-TTTGTATAT-TTTATTGCCGGACACTG-GATACATTATTTAA
gi|13 : T--------GTATGTC-T-----ATTTCTTTGAAA--TAAC----TTATTTG--TAT-TTTATTGCC-GACACTG---TACATTATTTAAttt
gi|14 : acAACAATCACAAA--ATG--T--AACGCCTGAA
gi|14 : --ACTTT-GTGT--------GT-TGTT-TGATTTATTTCTTTGAActttgtgtgttgtttgatttatttctttgaatattt
gi|15 : aacaatcacaaaatgtaacgcctgaAAA--ATG--T-------CTGAAGA-TC-AAA-GTGAAATTAC-T--TGCGTT------TTAAT--AC-TT-GTGtattt
gi|16 : tgtT-TTTGTATAT-TT-ATTGCCGGACACTGTGATACATTATTTAAct
gi|17 : taTGTATAT-TT-ATTGCCGGACACTGTGATACAtttg
gi|2 : taATTTAATACAGCTTTT-----GAAACCA--ACATCGAACAGTTTTATTTATTTTAAGT----TGCATGTAAATGATGCGAGCTATTTTAAAATTGTC-TTAAACTACAAACTTTTTTGTA---CAAGGATACTATTGACAGTTTCCTG-AAAAC-ACATTGTGACGTCAT--TCTAT-TG------TTT-GTAA-CATCATGGATTTGAAACGT
gi|3 : cacacatcggaccaagacacgtgtacataagcaacttatccatgaatcagaatacagaaaaaccatactcattgaacgtgtacacatatgcgtgaacgaataactctcagtcattcctctatataaactttatacggacggtgtagtggaaaggagagcgaaagaaaaacTTTTATACAGTTTTT-----AAAACCA--ACATTGAACA-GTTT-T--ATTTAAAAT----CGCAGGTAAATGATGCGAGCTATT----AACTGTG-TTAA-CTATAAACGTTTTTGTA---CAACGACACTATTGACAGTTT---G-ATAttcaa
gi|4 : cacacttcggaccaggatatgtatataaccggaatacaaaagaaaatcaaactcagtcaacatctagacatatgcgggaacggataattctgtcattcctctattatacaaactttatacggacggtgcactggaaagaagaaatacatATTTTATACAGTTTTT------AAACCA---CATTAAACA-TTTTAT--ATTTGAAAC----CGCATAT-AATGATGCGAGCTATT----AACTGTGTTTAA-CTATAAAAGTTTTTGTA---CAACGACACTATTGACAGTTTCCTG--TAAC-GCATTGTGACGTC---AT-T-C----AA-TGTTCAATAA-CGTCATAGATTTG-AACGTTCAACG---TCACTT-------GTTTTTAA--ATG--TAAAACGTCTGAGGA-TC-AAA-ATGAAAGCGC-T--TACG--------TT--T--AC--T-GTGT--------GC-TAT---------TTTCTTTGAAAATTACC----TT-TTTGTATATATTTATTGCCGGACACTGTGATACATTATTTAAtttagtaatttctcatttccggtgtaattaatacatgattaatgaattgaatatacatgtatagtatatgtact
gi|5 : TTCCCCG-ATAACTGTTTTATGACGTCGT--T-TACGTGAAA-T-TTC-ATAAACGCCTT---TATG-AACATGAGA-----TTACTTCAAA-CAATCTCAAA--ATG--T--AACGCCTGAAGA-TT-AAA-ATGAAAGCGCTT--TGCGTTC--AAATT--TTAACTTTGGTGT--------GT-TGTT-TG----ATTTATT---------------TC-TTTGAATAT-TTTA-TACCGGATACTTTGAT
gi|6 : taacgttaatccttTTTCCCG-ATAACTGT-TTATGACGTCGTAAT-TACGTGAAAAT-TTC-ATAA-CGCCTT---TATG-A-CGGGAGA-----TTACTTCAAAACAATCTCAAAATATG--T--AACGCCTGAAGA-TTGAAA-ATGAAAGCGC-T--TGCGTTA--AAATT--TA-ACTTT-GTGT--------GT-TGTT-TGATTTATTTCTTTGAAtcttagaaatttcaatttatttatattatatatatat
gi|7 : taacgttaaatcctATTTCAAAACAATTTTAAA--ATG--T--AATGTCAAAAGA-TT-----TTTAAA--GC-T--TGCATTATAAGATT--TTAACTGT-GTGTGGGAGGGGGG-TGT--------ATTGCTTT------TA--------------ATAT-TTCA-CACCAGACATTGTGAAATTTCATTTt
gi|8 : CATTTTCTCT-ATATCTGT-TTATGACGTCGTAAT-AACGTGAAA-T-TTC-ATAA--GCCCTT--TATG-A-TGTATGA-----TTCCTTCAAAACAATTTCAAA--ATG--T--AACGCCTGAAGATTT-ACA-ATGAAAGCcatttgacgtatatatatg
gi|9 : taacgttaaatATAGTCTCAAA--ATG--T--AACGCCTGAAGATTT-AAACATGAAAGCGC-T--TGCGTTC--AAATT--TTAACTTT-GTGT--------GT-TGTTCTG----ATTTATTT