lowQualScore : 11 1111 22222222222222 7777777777777 11
lowQualScore : 2 2 00 4 2 444 4 2 2 55555 33 2 666 2 66666 2 2 2 2 2 2 1111 333 2 6 33 2 2 55555555555555 2 6666666666666 2 1 2 2 5555 55 2 66 5555 99999
lowQualScore : . . .. . . ... . . . ..... .. . ... . ..... . . . . . . .... ... . . .. . . .............. . ............. . . . . .... .. . .. .... .....
lowQualScore : 5 5 55 7 4 111 7 4 4 99999 44 5 999 5 22222 5 7 7 7 7 7 0000 999 7 6 77 7 7 88888888888888 5 8888888888888 7 7 7 7 7777 33 7 44 7777 33333
consensus : AAAGAA-GCC-TAAT-TGT-GTTT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG----TGTC-A-TA-TTAAA--TTC-A-GGC----AT----T-N-AACAAT-GT-----------TTTCTAA-CAAAGC-T-AA----TAG-AC-AAAACCG-GAAA----GG-----AACAGGGTTTTCCGG
Reference ( gi|7 ) : AAAGAA-GCC-TAAA-TGT-GTTT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG----TGTC-A-TA-TTGAA--TTC-A-GGC----AT----T-T-AACAAT-GTTT-----C-TATTTCTAA-CAAAGC-T-AA----TAA-AC-AAAACCT-GAAA----GG-----AACAGGGTTTTCCGG
gi|6 : AAAGAA-GCC-TAAA-TGT-GTTT-A---TT-G-TT-GAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG----TGTC-A-TA-TTAAA--TTC-A-GGC----ATTTAAT-T-AACAAT-G-------------TTCTAA-CAAAGG-T-AA----TAG-AC-AAAACCC--AAA----AG-----AACAGGGTTTTCCGG
gi|5 : aaaacttgAAAGAA-GCC-TAAT-TAT-GTTT-A---TT-T-TT-TAAC-----T--TT-TAT---A-CA-----G-AGT-CT-T-G-TA-CAG----TGTC-A-TA-TTAAA--TTC-A-GGCTTAAAT----TAA-AACAAT-G------------TTTCTAA-CAAAGC-T-AA----TGG-AC-AAAACCG-GAAA----GG-----AACATGGTTTTCCGG
gi|9 : aaacttgAAAGAA-GCC-TAAT-TGT-GTTT-AATATT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG----TGTC-A-TA-TTAAA--TTC-A-GG-----------------CAAT-G------------TTTCTAA-CAAAGC-T-AA----TAA-TT-AAAACCG-GAAA----GG-----AAAAGGGTTTTCCG
gi|8 : aaaacttgAAAGAA-GCC-TAAA-TGT-GTTTCA---TT-G-TT-TAA---------TT-TAT---A-CA-----G--GA-CT-T-A-TA-CA-----TGTCTA-TAATTAAA--TTC-A-G-C----AT----T-T-AACAAT-GTTT-----C-------TAA-CAAAGC-T-AA----TAG-AC-AAAACCG-GAAA----GG-----AACAGGGTTTTCCGG
gi|1 : aaacttgAAAGAA-GCC-TAAT-TTT-GTTT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CATACATGTAGA-AT-T-G-TA-CAG----TGTC-A-TA-TTAAA--TTC-A-GGC----AT----G-A-AACAAT-GTGTACAAGC-TGTTTCTAA-CAAAGC-T-AA----TGA-AC-GATACCA-GAAA----GG-----AACAGGGTTTTCC
gi|3 : aaactttAAAGAATGCC-TGAT-TGT-ATTT-A---TT-G-TA-TTAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAGTACATGTC-A-TA-TTAAA--TTC-A-GAC----AT----G-A-AACAAT-G------------TTTCTAA-CAAAGC-T-AA----TAG-ACAAAAACCG-GAAA----GG-----AACAGGGTTTTCCAGa
gi|12 : aaaacttgAAAGAA-GCT-TAAT-TGT-GTTT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG----TGTC-A-TA-TTA---------------------------AACAAT-G------------TTTCTAA-CAAAGC-TAAA----TAG-AC-AAAATCG-GAAA----GG-----AACATGGTT
gi|10 : aaaacttgAAAGAA---C-CAAG-TG--GT---A---TTAG-TTCTAAC-----T--TTCTAT---A-CA-----G-AGA-TT-T-G-TA--AG----TGTC-G-TA-TTTAAATTTC-A-GGC----AT----T-A-AACAAT-GT------------TTCTAA-CAA--C-T-AA----TAG-AC--AAACCA-GAAA----GA-----AACA-GGTTTTC
gi|14 : aaactAAAGAG---C-TAAT-TGT-GTTT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-TC-T-G-T--CAGC---TGTC----A-TTAAT--TTC-A-GGC----A-------T-GAAAAT-G------------TTTCTAA-CAAG---T-GT----TAG-AC-AAAGCCA-GAAA----GG------AC--GGTTT
gi|13 : aacttgAAAGAG---C-TAAT-TGT-GTTT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-TC-T-G-T--CAGC---TGTC----A-TTAAT--TTC-A-GGC----A-------T-GAAAAT-G------------TTTCTAA-CAAG---T-GT----TAG-AC-AAAGCCA-GAAA----GG------AC--GGTTT
gi|19 : aacttgAAAGAA-GTA-TAAT-TGT-GTTT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CN-----G-A
gi|20 : taaaagcttgaaaaAAAGAA-GCC-TATA-TGT-GTTT-A---TT-G-TT-TAAC-----
gi|4 : aaaacttgAAGAA-GCC-TAAAATGTTGTTT-A---TTTG-TT-TAACCTATTT--TT-TATCTAA-CA-----G-AGAACT-TAG-TAACGG----GGTC-A-TA-TCAAA--TTC-A-GGC----AT----T-TAAACAAC--------------TTTCTAA-CAAA-C-T-AA----T-A-AC-AA---CC-GGAA----GG-----AACAGGGTTTTCTGG
gi|2 : actcgAAAAA-GCCCTACA-TAT-GTTC-A---AT-G-TT-TATC-----T--TT--AT---GGCA-----G-AGA-CA-T-G-TA-CA-----TGTC-A-TA--TAAA--TTT-AGGGT----AT----T-T-ACCAAT-GTTT-----CATA----TAG-CACGGCAT-AAACATTAAGAC-AAAACCCGGAAA----GGA----AACGGGGTTTTCCGG
gi|15 : atactgtgAAGAA-GCC-TAAT-TGTTGTTT-A---TT-GCTT-TAAT-----T--TT-TAT---A-CA-----G-AGA-TT-T-GTTA-CAG----TGTC-A-TA-TAAAT--TTCAA-GGCA---AT----G-A-AACAAT-GTTT-----C-g
gi|11 : aacttgGAA-GTA-TAAT-TGT-GTTT-T---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG----TGTC-A-TA-TTAAA--TTC-A-GGC----AT----G-A-AACAAT-GT-----------TTTC-AA-CAAAGC-T-AA----TAG-AC-AAAACCG-GAAA----GG-----AACAGGGTTTTCC
gi|16 : -TGT-GTTT-A---T--G-TT-TAAC-----TCCTT-TATG--A-CA-----G-AGA-CTGC-G-TA-CAG----TGTC-ACTA-TTACA--TTC-T-GGC----AT----G-A-AACAAT-GTtg
gi|17 : tctacat-AACAATTGTTT-----------TCTAAACAAAGC-T-AA----TAG-AT-AAAACCG-GAAA----GG-----AAGAGGG-TTTCCGG
gi|18 : catga-TGTTTCTAA-CAAAGC-T-AA----TAC-AC-AAAACCG-GAAAATGCGGAAATTAACAGGGTTTTCCAGg
Alignments
lowQualScore : 1111 11111111111111 22222222222
lowQualScore : 2 2 2 33 4 2 2 333 2 2 2 55555 33 2 666 2 55555 2 2 2 2 2 2 0000 333 2 2 2 2 2 55555555555555 2 88888888888 33 2 0 2 2 444 33 2 2 5555 88888
lowQualScore : . . . .. . . . ... . . . ..... .. . ... . ..... . . . . . . .... ... . . . . . .............. . ........... .. . . . . ... .. . . .... .....
lowQualScore : 4 2 2 22 4 2 2 999 2 2 2 66666 22 4 555 4 99999 4 5 5 5 5 5 3333 111 5 5 5 5 5 44444444444444 2 99999999999 22 5 9 5 5 444 44 5 5 3333 88888
consensus : AAAGAA-GCC-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG----TGTC-A-TA-TT-AAATT-C-A-GGC----A-T----T-AAACAAT-GT----------TT--TCTAA-CAAAGC-T-A---AT--AGAC-AAAA-CCGGAAA----GG-----AACAGGGTTTTCCGG
Reference ( family-450 ) : AAAGAA-GCC-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG----TGTC-A-TA-TT-AAATT-C-A-GGC----A-T----T-NAACAAT-GT----------TT--TCTAA-CAAAGC-T-A---AT--AGAC-AAAA-CCGGAAA----GG-----AACAGGGTTTTCCGG
gi|1 : AAAGAA-GCC-TA-AT-TTT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CATACATGTAGA-AT-T-G-TA-CAG----TGTC-A-TA-TT-AAATT-C-A-GGC----A-T----G-AAACAAT-GTGTACAAGCTGTT--TCTAA-CAAAGC-T-A---AT--GAAC-GATA-CCAGAAA----GG-----AACAGGGTTTTCC
gi|10 : aaactttAAAGAA---C-CA-AG-TG--GTATT-A------G-TTCTAAC-----T--TTCTAT---A-CA-----G-AGA-TT-T-G-TA--AG----TGTC-G-TA-TTTAAATTTC-A-GGC----A-T----T-AAACAAT-G-----------TT--TCTAA-CAA--C-T-A---AT--AGAC--AAA-CCAGAAA----GA-----AACA-GGTTTTCa
gi|11 : aaactGAA-GTA-TA-AT-TGT-GT-TT-T---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG----TGTC-A-TA-TT-AAATT-C-A-GGC----A-T----G-AAACAAT-GT----------TT--TC-AA-CAAAGC-T-A---AT--AGAC-AAAA-CCGGAAA----GG-----AACAGGGTTTTCC
gi|12 : AAAGAA-GCT-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG----TGTC-A-TA-TT-A--------------------------AACAAT-G-----------TT--TCTAA-CAAAGC-TAA---AT--AGAC-AAAA-TCGGAAA----GG-----AACATGGTTtg
gi|13 : aaaacttgAAAGAG---C-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-TC-T-G-T--CAGC---TGTC----A-TT-AATTT-C-A-GGC----A------T-GAA-AAT-G-----------TT--TCTAA-CAAG---T-G---TT--AGAC-AAAG-CCAGAAA----GG------AC--GGTTT
gi|14 : aacttgAAAGAG---C-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-TC-T-G-T--CAGC---TGTC----A-TT-AATTT-C-A-GGC----A------T-GAA-AAT-G-----------TT--TCTAA-CAAG---T-G---TT--AGAC-AAAG-CCAGAAA----GG------AC--GGTTT
gi|15 : aacttgAAGAA-GCC-TA-AT-TGTTGT-TT-A---TT-GCTT-TAAT-----T--TT-TAT---A-CA-----G-AGA-TT-T-GTTA-CAG----TGTC-A-TA-TA-AATTT-CAA-GGCA---A-T----G-AAACAAT-GT----------TT--
gi|16 : aacttgC-TACAT-TGT-GT-TT-A---T--G-TT-TAAC-----TCCTT-TATG--A-CA-----G-AGA-CTGC-G-TA-CAG----TGTC-ACTA-TT-ACATT-C-T-GGC----A-T----G-AAACAAT-GT----------c
gi|17 : tC----A-T----G-AAACAATTGT----------TT--TCTAAACAAAGC-T-A---AT--AGAT-AAAA-CCGGAAA----GG-----AAGAGGG-TTTCCGG
gi|18 : AAT-GT----------TT---CTAA-CAAAGC-T-A---AT--ACAC-AAAA-CCGGAAAATGCGGAAATTAACAGGGTTTTCCAGg
gi|19 : AAAGAA-GTA-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CN-----G-Ag
gi|2 : taaaagcttgaaaaAAAAA-GCCCTA-CA-TAT-GT-TC-A---AT-G-TT-TATC-----T--TT--AT---GGCA-----G-AGA-CA-T-G-TA-CA-----TGTC-A-TA--T-AAATT-T-AGGGT----A-T----T-TACCAAT-GT----------TTCATATAG-CACGGCAT-AAACATTAAGAC-AAAACCCGGAAA----GGA----AACGGGGTTTTCCGG
gi|20 : atactgtgAAAGAA-GCC-TA-TA-TGT-GT-TT-A---TT-G-TT-TAAC-----g
gi|3 : aaaacttgAAAGAATGCC-TG-AT-TGT-AT-TT-A---TT-G-TA-TTAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAGTACATGTC-A-TA-TT-AAATT-C-A-GAC----A-T----G-AAACAAT-G-----------TT--TCTAA-CAAAGC-T-A---AT--AGACAAAAA-CCGGAAA----GG-----AACAGGGTTTTCCAG
gi|4 : aaaacttgAAGAA-GCC-TA-AAATGTTGT-TT-A---TTTG-TT-TAACCTATTT--TT-TATCTAA-CA-----G-AGAACT-TAG-TAACGG----GGTC-A-TA-TC-AAATT-C-A-GGC----ATT----T-AAACAA---C----------TT--TCTAA-CAAA-C-T-A---AT--A-AC---AA-CCGG-AA----GG-----AACAGGGTTTTCTGG
gi|5 : actcgAAAGAA-GCC-TA-AT-TAT-GT-TT-A---TT-T-TT-TAAC-----T--TT-TAT---A-CA-----G-AGT-CT-T-G-TA-CAG----TGTC-A-TA-TT-AAATT-C-A-GGCTTAAA-T----TAAAACAAT-G-----------TT--TCTAA-CAAAGC-T-A---AT--GGAC-AAAA-CCGGAAA----GG-----AACATGGTTTTCCGG
gi|6 : aaacttgAAAGAA-GCC-TA-AA-TGT-GT-TT-A---TT-G-TT-GAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG----TGTC-A-TA-TT-AAATT-C-A-GGC----A-TTTAAT-TAACAAT-G------------T--TCTAA-CAAAGG-T-A---AT--AGAC-AAAA-CC-CAAA----AG-----AACAGGGTTTTCCGG
gi|7 : aaaacttgAAAGAA-GCC-TA-AA-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG----TGTC-A-TA-TT-GAATT-C-A-GGC----A-T----T-TAACAAT-GTTTCTA-----TT--TCTAA-CAAAGC-T-A---AT--AAAC-AAAA-CCTGAAA----GG-----AACAGGGTTTTCCGG
gi|8 : AAAGAA-GCC-TA-AA-TGT-GT-TTCA---TT-G-TT-TAA---------TT-TAT---A-CA-----G--GA-CT-T-A-TA-CA-----TGTCTA-TAATT-AAATT-C-A-G-C----A-T----T-TAACAAT-GT----------TT---CTAA-CAAAGC-T-A---AT--AGAC-AAAA-CCGGAAA----GG-----AACAGGGTTTTCCGG
gi|9 : aaacttgAAAGAA-GCC-TA-AT-TGT-GT-TT-AATATT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG----TGTC-A-TA-TT-AAATT-C-A-GG-----------------CAAT-G-----------TT--TCTAA-CAAAGC-T-A---AT--AATT-AAAA-CCGGAAA----GG-----AAAAGGGTTTTCCG
Alignments
lowQualScore : 22222222222
lowQualScore : 2 2 2 33 4 2 2 333 2 2 2 55555 33 2 666 2 55555 2 2 2 2 2 2 5 5555 333 2 2 2 2 2 7777 4 777777 2 88888888888 33 2 0 2 2 444 33 2 2 5555 88888
lowQualScore : . . . .. . . . ... . . . ..... .. . ... . ..... . . . . . . . .... ... . . . . . .... . ...... . ........... .. . . . . ... .. . . .... .....
lowQualScore : 4 2 2 22 4 2 2 999 2 2 2 66666 22 4 555 4 99999 4 5 5 5 5 5 0 3333 111 5 5 5 5 5 4444 7 222222 2 99999999999 22 5 9 5 5 444 44 5 5 3333 88888
consensus : AAAGAA-GCC-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGC----A-TN-A---AACAAT-GT----------TT--TCTAA-CAAAGC-T-A---AT--AGAC-AAAA-CCGGAAA----GG-----AACAGGGTTTTCCGG
Reference ( family-450 ) : AAAGAA-GCC-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGC----A-TT-A---AACAAT-GT----------TT--TCTAA-CAAAGC-T-A---AT--AGAC-AAAA-CCGGAAA----GG-----AACAGGGTTTTCCGG
gi|1 : AAAGAA-GCC-TA-AT-TTT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CATACATGTAGA-AT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGC----A-TG-A---AACAAT-GTGTACAAGCTGTT--TCTAA-CAAAGC-T-A---AT--GAAC-GATA-CCAGAAA----GG-----AACAGGGTTTTCC
gi|10 : aaactttAAAGAA---C-CA-AG-TG--GTATT-A------G-TTCTAAC-----T--TTCTAT---A-CA-----G-AGA-TT-T-G-TA--AG-T----GTC-G-TA-TTTAAATTTC-A-GGC----A-TT-A---AACAAT-G-----------TT--TCTAA-CAA--C-T-A---AT--AGAC--AAA-CCAGAAA----GA-----AACA-GGTTTTCa
gi|11 : aaactGAA-GTA-TA-AT-TGT-GT-TT-T---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGC----A-TG-A---AACAAT-GT----------TT--TC-AA-CAAAGC-T-A---AT--AGAC-AAAA-CCGGAAA----GG-----AACAGGGTTTTCC
gi|12 : AAAGAA-GCT-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-T----------------------A-TT-A---AACAAT-G-----------TT--TCTAA-CAAAGC-TAA---AT--AGAC-AAAA-TCGGAAA----GG-----AACATGGTTtg
gi|13 : aaaacttgAAAGAG---C-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-TC-T-G-T--CAGCT----GTC----A-TT-AATTT-C-A-GGC----A-TG-A---A--AAT-G-----------TT--TCTAA-CAAG---T-G---TT--AGAC-AAAG-CCAGAAA----GG------AC--GGTTT
gi|14 : aacttgAAAGAG---C-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-TC-T-G-T--CAGCT----GTC----A-TT-AATTT-C-A-GGC----A-TG-A---A--AAT-G-----------TT--TCTAA-CAAG---T-G---TT--AGAC-AAAG-CCAGAAA----GG------AC--GGTTT
gi|15 : aacttgAAGAA-GCC-TA-AT-TGTTGT-TT-A---TT-GCTT-TAAT-----T--TT-TAT---A-CA-----G-AGA-TT-T-GTTA-CAG-T----GTC-A-TA-TA-AATTT-CAA-GGCA---A-TG-A---AACAAT-GT----------TT--
gi|16 : aacttgC-TACAT-TGT-GT-TT-A---T--G-TT-TAAC-----TCCTT-TATG--A-CA-----G-AGA-CTGC-G-TA-CAG-T----GTC-ACTA-TT-ACATT-C-T-GGC----A-TG-A---AACAAT-GT----------c
gi|17 : tC----A-TG-A---AACAATTGT----------TT--TCTAAACAAAGC-T-A---AT--AGAT-AAAA-CCGGAAA----GG-----AAGAGGG-TTTCCGG
gi|18 : AAT-GT----------TT---CTAA-CAAAGC-T-A---AT--ACAC-AAAA-CCGGAAAATGCGGAAATTAACAGGGTTTTCCAGg
gi|19 : AAAGAA-GTA-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CN-----G-Ag
gi|2 : taaaagcttgaaaaAAAAA-GCCCTA-CA-TAT-GT-TC-A---AT-G-TT-TATC-----T--TT--AT---GGCA-----G-AGA-CA-T-G-TA-CA--T----GTC-A-TA--T-AAATT-T-AGGGT----A-TT-T---ACCAAT-GT----------TTCATATAG-CACGGCAT-AAACATTAAGAC-AAAACCCGGAAA----GGA----AACGGGGTTTTCCGG
gi|20 : atactgtgAAAGAA-GCC-TA-TA-TGT-GT-TT-A---TT-G-TT-TAAC-----g
gi|3 : aaaacttgAAAGAATGCC-TG-AT-TGT-AT-TT-A---TT-G-TA-TTAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-TACATGTC-A-TA-TT-AAATT-C-A-GAC----A-TG-A---AACAAT-G-----------TT--TCTAA-CAAAGC-T-A---AT--AGACAAAAA-CCGGAAA----GG-----AACAGGGTTTTCCAG
gi|4 : aaaacttgAAGAA-GCC-TA-AAATGTTGT-TT-A---TTTG-TT-TAACCTATTT--TT-TATCTAA-CA-----G-AGAACT-TAG-TAACGG-G----GTC-A-TA-TC-AAATT-C-A-GGC----ATTT-A---AACAA---C----------TT--TCTAA-CAAA-C-T-A---AT--A-AC---AA-CCGG-AA----GG-----AACAGGGTTTTCTGG
gi|5 : actcgAAAGAA-GCC-TA-AT-TAT-GT-TT-A---TT-T-TT-TAAC-----T--TT-TAT---A-CA-----G-AGT-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGCTTAAA-TTAA---AACAAT-G-----------TT--TCTAA-CAAAGC-T-A---AT--GGAC-AAAA-CCGGAAA----GG-----AACATGGTTTTCCGG
gi|6 : aaacttgAAAGAA-GCC-TA-AA-TGT-GT-TT-A---TT-G-TT-GAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGC----ATTT-AATTAACAAT-G------------T--TCTAA-CAAAGG-T-A---AT--AGAC-AAAA-CC-CAAA----AG-----AACAGGGTTTTCCGG
gi|7 : aaaacttgAAAGAA-GCC-TA-AA-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-GAATT-C-A-GGC----A-TT-T---AACAAT-GTTTCTA-----TT--TCTAA-CAAAGC-T-A---AT--AAAC-AAAA-CCTGAAA----GG-----AACAGGGTTTTCCGG
gi|8 : AAAGAA-GCC-TA-AA-TGT-GT-TTCA---TT-G-TT-TAA---------TT-TAT---A-CA-----G--GA-CT-T-A-TA-CA--T----GTCTA-TAATT-AAATT-C-A-G-C----A-TT-T---AACAAT-GT----------TT---CTAA-CAAAGC-T-A---AT--AGAC-AAAA-CCGGAAA----GG-----AACAGGGTTTTCCGG
gi|9 : aaacttgAAAGAA-GCC-TA-AT-TGT-GT-TT-AATATT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GG----------------CAAT-G-----------TT--TCTAA-CAAAGC-T-A---AT--AATT-AAAA-CCGGAAA----GG-----AAAAGGGTTTTCCG
Alignments
lowQualScore : 22222222222
lowQualScore : 2 2 2 33 4 2 2 333 2 2 2 55555 33 2 666 2 55555 2 2 2 2 2 2 5 5555 333 2 2 2 2 2 55 888 2 444 2 88888888888 33 2 0 2 2 444 33 2 2 5555 88888
lowQualScore : . . . .. . . . ... . . . ..... .. . ... . ..... . . . . . . . .... ... . . . . . .. ... . ... . ........... .. . . . . ... .. . . .... .....
lowQualScore : 4 2 2 22 4 2 2 999 2 2 2 66666 22 4 555 4 99999 4 5 5 5 5 5 0 3333 111 5 5 5 5 5 66 888 6 111 2 99999999999 22 5 9 5 5 444 44 5 5 3333 88888
consensus : AAAGAA-GCC-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGC--A---TGA---AACAAT-GT----------TT--TCTAA-CAAAGC-T-A---AT--AGAC-AAAA-CCGGAAA----GG-----AACAGGGTTTTCCGG
Reference ( family-450 ) : AAAGAA-GCC-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGC--A---TNA---AACAAT-GT----------TT--TCTAA-CAAAGC-T-A---AT--AGAC-AAAA-CCGGAAA----GG-----AACAGGGTTTTCCGG
gi|1 : AAAGAA-GCC-TA-AT-TTT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CATACATGTAGA-AT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGC--A---TGA---AACAAT-GTGTACAAGCTGTT--TCTAA-CAAAGC-T-A---AT--GAAC-GATA-CCAGAAA----GG-----AACAGGGTTTTCC
gi|10 : aaactttAAAGAA---C-CA-AG-TG--GTATT-A------G-TTCTAAC-----T--TTCTAT---A-CA-----G-AGA-TT-T-G-TA--AG-T----GTC-G-TA-TTTAAATTTC-A-GGC--A---TTA---AACAAT-G-----------TT--TCTAA-CAA--C-T-A---AT--AGAC--AAA-CCAGAAA----GA-----AACA-GGTTTTCa
gi|11 : aaactGAA-GTA-TA-AT-TGT-GT-TT-T---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGC--A---TGA---AACAAT-GT----------TT--TC-AA-CAAAGC-T-A---AT--AGAC-AAAA-CCGGAAA----GG-----AACAGGGTTTTCC
gi|12 : AAAGAA-GCT-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT----------------------A---AACAAT-G-----------TT--TCTAA-CAAAGC-TAA---AT--AGAC-AAAA-TCGGAAA----GG-----AACATGGTTtg
gi|13 : aaaacttgAAAGAG---C-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-TC-T-G-T--CAGCT----GTC----A-TT-AATTT-C-A-GGC--A---TGA---A--AAT-G-----------TT--TCTAA-CAAG---T-G---TT--AGAC-AAAG-CCAGAAA----GG------AC--GGTTT
gi|14 : aacttgAAAGAG---C-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-TC-T-G-T--CAGCT----GTC----A-TT-AATTT-C-A-GGC--A---TGA---A--AAT-G-----------TT--TCTAA-CAAG---T-G---TT--AGAC-AAAG-CCAGAAA----GG------AC--GGTTT
gi|15 : aacttgAAGAA-GCC-TA-AT-TGTTGT-TT-A---TT-GCTT-TAAT-----T--TT-TAT---A-CA-----G-AGA-TT-T-GTTA-CAG-T----GTC-A-TA-TA-AATTT-CAA-GGCA-A---TGA---AACAAT-GT----------TT--
gi|16 : aacttgC-TACAT-TGT-GT-TT-A---T--G-TT-TAAC-----TCCTT-TATG--A-CA-----G-AGA-CTGC-G-TA-CAG-T----GTC-ACTA-TT-ACATT-C-T-GGC--A---TGA---AACAAT-GT----------c
gi|17 : tC--A---TGA---AACAATTGT----------TT--TCTAAACAAAGC-T-A---AT--AGAT-AAAA-CCGGAAA----GG-----AAGAGGG-TTTCCGG
gi|18 : AAT-GT----------TT---CTAA-CAAAGC-T-A---AT--ACAC-AAAA-CCGGAAAATGCGGAAATTAACAGGGTTTTCCAGg
gi|19 : AAAGAA-GTA-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CN-----G-Ag
gi|2 : taaaagcttgaaaaAAAAA-GCCCTA-CA-TAT-GT-TC-A---AT-G-TT-TATC-----T--TT--AT---GGCA-----G-AGA-CA-T-G-TA-CA--T----GTC-A-TA--T-AAATT-T-AGGGT--A---TTT---ACCAAT-GT----------TTCATATAG-CACGGCAT-AAACATTAAGAC-AAAACCCGGAAA----GGA----AACGGGGTTTTCCGG
gi|20 : atactgtgAAAGAA-GCC-TA-TA-TGT-GT-TT-A---TT-G-TT-TAAC-----g
gi|3 : aaaacttgAAAGAATGCC-TG-AT-TGT-AT-TT-A---TT-G-TA-TTAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-TACATGTC-A-TA-TT-AAATT-C-A-GAC--A---TGA---AACAAT-G-----------TT--TCTAA-CAAAGC-T-A---AT--AGACAAAAA-CCGGAAA----GG-----AACAGGGTTTTCCAG
gi|4 : aaaacttgAAGAA-GCC-TA-AAATGTTGT-TT-A---TTTG-TT-TAACCTATTT--TT-TATCTAA-CA-----G-AGAACT-TAG-TAACGG-G----GTC-A-TA-TC-AAATT-C-A-GGC--AT--TTA---AACAA---C----------TT--TCTAA-CAAA-C-T-A---AT--A-AC---AA-CCGG-AA----GG-----AACAGGGTTTTCTGG
gi|5 : actcgAAAGAA-GCC-TA-AT-TAT-GT-TT-A---TT-T-TT-TAAC-----T--TT-TAT---A-CA-----G-AGT-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGCTTAAATTAA---AACAAT-G-----------TT--TCTAA-CAAAGC-T-A---AT--GGAC-AAAA-CCGGAAA----GG-----AACATGGTTTTCCGG
gi|6 : aaacttgAAAGAA-GCC-TA-AA-TGT-GT-TT-A---TT-G-TT-GAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGC--AT--TTAATTAACAAT-G------------T--TCTAA-CAAAGG-T-A---AT--AGAC-AAAA-CC-CAAA----AG-----AACAGGGTTTTCCGG
gi|7 : aaaacttgAAAGAA-GCC-TA-AA-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-GAATT-C-A-GGC--A---TTT---AACAAT-GTTTCTA-----TT--TCTAA-CAAAGC-T-A---AT--AAAC-AAAA-CCTGAAA----GG-----AACAGGGTTTTCCGG
gi|8 : AAAGAA-GCC-TA-AA-TGT-GT-TTCA---TT-G-TT-TAA---------TT-TAT---A-CA-----G--GA-CT-T-A-TA-CA--T----GTCTA-TAATT-AAATT-C-A-G-C--A---TTT---AACAAT-GT----------TT---CTAA-CAAAGC-T-A---AT--AGAC-AAAA-CCGGAAA----GG-----AACAGGGTTTTCCGG
gi|9 : aaacttgAAAGAA-GCC-TA-AT-TGT-GT-TT-AATATT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GG---------------CAAT-G-----------TT--TCTAA-CAAAGC-T-A---AT--AATT-AAAA-CCGGAAA----GG-----AAAAGGGTTTTCCG
Alignments
lowQualScore : 22222222222
lowQualScore : 2 2 2 33 4 2 2 333 2 2 2 55555 33 2 666 2 55555 2 2 2 2 2 2 5 5555 333 2 2 2 2 2 55 999 2 33 2 88888888888 33 2 0 2 2 444 33 2 2 5555 88888
lowQualScore : . . . .. . . . ... . . . ..... .. . ... . ..... . . . . . . . .... ... . . . . . .. ... . .. . ........... .. . . . . ... .. . . .... .....
lowQualScore : 4 2 2 22 4 2 2 999 2 2 2 66666 22 4 555 4 99999 4 5 5 5 5 5 0 3333 111 5 5 5 5 5 66 777 2 22 2 99999999999 22 5 9 5 5 444 44 5 5 3333 88888
consensus : AAAGAA-GCC-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGC--A---TGA--AACAAT-GT----------TT--TCTAA-CAAAGC-T-A---AT--AGAC-AAAA-CCGGAAA----GG-----AACAGGGTTTTCCGG
Reference ( family-450 ) : AAAGAA-GCC-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGC--A---TGA--AACAAT-GT----------TT--TCTAA-CAAAGC-T-A---AT--AGAC-AAAA-CCGGAAA----GG-----AACAGGGTTTTCCGG
gi|1 : AAAGAA-GCC-TA-AT-TTT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CATACATGTAGA-AT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGC--A---TGA--AACAAT-GTGTACAAGCTGTT--TCTAA-CAAAGC-T-A---AT--GAAC-GATA-CCAGAAA----GG-----AACAGGGTTTTCC
gi|10 : aaactttAAAGAA---C-CA-AG-TG--GTATT-A------G-TTCTAAC-----T--TTCTAT---A-CA-----G-AGA-TT-T-G-TA--AG-T----GTC-G-TA-TTTAAATTTC-A-GGC--A---TTA--AACAAT-G-----------TT--TCTAA-CAA--C-T-A---AT--AGAC--AAA-CCAGAAA----GA-----AACA-GGTTTTCa
gi|11 : aaactGAA-GTA-TA-AT-TGT-GT-TT-T---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGC--A---TGA--AACAAT-GT----------TT--TC-AA-CAAAGC-T-A---AT--AGAC-AAAA-CCGGAAA----GG-----AACAGGGTTTTCC
gi|12 : AAAGAA-GCT-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT----------------------A--AACAAT-G-----------TT--TCTAA-CAAAGC-TAA---AT--AGAC-AAAA-TCGGAAA----GG-----AACATGGTTtg
gi|13 : aaaacttgAAAGAG---C-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-TC-T-G-T--CAGCT----GTC----A-TT-AATTT-C-A-GGC--A---TGA--A--AAT-G-----------TT--TCTAA-CAAG---T-G---TT--AGAC-AAAG-CCAGAAA----GG------AC--GGTTT
gi|14 : aacttgAAAGAG---C-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-TC-T-G-T--CAGCT----GTC----A-TT-AATTT-C-A-GGC--A---TGA--A--AAT-G-----------TT--TCTAA-CAAG---T-G---TT--AGAC-AAAG-CCAGAAA----GG------AC--GGTTT
gi|15 : aacttgAAGAA-GCC-TA-AT-TGTTGT-TT-A---TT-GCTT-TAAT-----T--TT-TAT---A-CA-----G-AGA-TT-T-GTTA-CAG-T----GTC-A-TA-TA-AATTT-CAA-GGCA-A---TGA--AACAAT-GT----------TT--
gi|16 : aacttgC-TACAT-TGT-GT-TT-A---T--G-TT-TAAC-----TCCTT-TATG--A-CA-----G-AGA-CTGC-G-TA-CAG-T----GTC-ACTA-TT-ACATT-C-T-GGC--A---TGA--AACAAT-GT----------c
gi|17 : tC--A---TGA--AACAATTGT----------TT--TCTAAACAAAGC-T-A---AT--AGAT-AAAA-CCGGAAA----GG-----AAGAGGG-TTTCCGG
gi|18 : AAT-GT----------TT---CTAA-CAAAGC-T-A---AT--ACAC-AAAA-CCGGAAAATGCGGAAATTAACAGGGTTTTCCAGg
gi|19 : AAAGAA-GTA-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CN-----G-Ag
gi|2 : taaaagcttgaaaaAAAAA-GCCCTA-CA-TAT-GT-TC-A---AT-G-TT-TATC-----T--TT--AT---GGCA-----G-AGA-CA-T-G-TA-CA--T----GTC-A-TA--T-AAATT-T-AGGGT--A---TTT--ACCAAT-GT----------TTCATATAG-CACGGCAT-AAACATTAAGAC-AAAACCCGGAAA----GGA----AACGGGGTTTTCCGG
gi|20 : atactgtgAAAGAA-GCC-TA-TA-TGT-GT-TT-A---TT-G-TT-TAAC-----g
gi|3 : aaaacttgAAAGAATGCC-TG-AT-TGT-AT-TT-A---TT-G-TA-TTAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-TACATGTC-A-TA-TT-AAATT-C-A-GAC--A---TGA--AACAAT-G-----------TT--TCTAA-CAAAGC-T-A---AT--AGACAAAAA-CCGGAAA----GG-----AACAGGGTTTTCCAG
gi|4 : aaaacttgAAGAA-GCC-TA-AAATGTTGT-TT-A---TTTG-TT-TAACCTATTT--TT-TATCTAA-CA-----G-AGAACT-TAG-TAACGG-G----GTC-A-TA-TC-AAATT-C-A-GGC--AT--TTA--AACAA---C----------TT--TCTAA-CAAA-C-T-A---AT--A-AC---AA-CCGG-AA----GG-----AACAGGGTTTTCTGG
gi|5 : actcgAAAGAA-GCC-TA-AT-TAT-GT-TT-A---TT-T-TT-TAAC-----T--TT-TAT---A-CA-----G-AGT-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGCTTAAATTAA--AACAAT-G-----------TT--TCTAA-CAAAGC-T-A---AT--GGAC-AAAA-CCGGAAA----GG-----AACATGGTTTTCCGG
gi|6 : aaacttgAAAGAA-GCC-TA-AA-TGT-GT-TT-A---TT-G-TT-GAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGC--ATT-TAATTAACAAT-G------------T--TCTAA-CAAAGG-T-A---AT--AGAC-AAAA-CC-CAAA----AG-----AACAGGGTTTTCCGG
gi|7 : aaaacttgAAAGAA-GCC-TA-AA-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-GAATT-C-A-GGC--A---TTT--AACAAT-GTTTCTA-----TT--TCTAA-CAAAGC-T-A---AT--AAAC-AAAA-CCTGAAA----GG-----AACAGGGTTTTCCGG
gi|8 : AAAGAA-GCC-TA-AA-TGT-GT-TTCA---TT-G-TT-TAA---------TT-TAT---A-CA-----G--GA-CT-T-A-TA-CA--T----GTCTA-TAATT-AAATT-C-A-G-C--A---TTT--AACAAT-GT----------TT---CTAA-CAAAGC-T-A---AT--AGAC-AAAA-CCGGAAA----GG-----AACAGGGTTTTCCGG
gi|9 : aaacttgAAAGAA-GCC-TA-AT-TGT-GT-TT-AATATT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GG--------------CAAT-G-----------TT--TCTAA-CAAAGC-T-A---AT--AATT-AAAA-CCGGAAA----GG-----AAAAGGGTTTTCCG
Alignments
lowQualScore : 22222222222
lowQualScore : 2 2 2 33 4 2 2 333 2 2 2 55555 33 2 666 2 55555 2 2 2 2 2 2 5 5555 333 2 2 2 2 2 55 999 2 33 2 88888888888 33 2 0 2 2 444 33 2 2 5555 88888
lowQualScore : . . . .. . . . ... . . . ..... .. . ... . ..... . . . . . . . .... ... . . . . . .. ... . .. . ........... .. . . . . ... .. . . .... .....
lowQualScore : 4 2 2 22 4 2 2 999 2 2 2 66666 22 4 555 4 99999 4 5 5 5 5 5 0 3333 111 5 5 5 5 5 66 777 2 22 2 99999999999 22 5 9 5 5 444 44 5 5 3333 88888
consensus : AAAGAA-GCC-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGC--A---TGA--AACAAT-GT----------TT--TCTAA-CAAAGC-T-A---AT--AGAC-AAAA-CCGGAAA----GG-----AACAGGGTTTTCCGG
Reference ( family-450 ) : AAAGAA-GCC-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGC--A---TGA--AACAAT-GT----------TT--TCTAA-CAAAGC-T-A---AT--AGAC-AAAA-CCGGAAA----GG-----AACAGGGTTTTCCGG
gi|1 : AAAGAA-GCC-TA-AT-TTT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CATACATGTAGA-AT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGC--A---TGA--AACAAT-GTGTACAAGCTGTT--TCTAA-CAAAGC-T-A---AT--GAAC-GATA-CCAGAAA----GG-----AACAGGGTTTTCC
gi|10 : aaactttAAAGAA---C-CA-AG-TG--GTATT-A------G-TTCTAAC-----T--TTCTAT---A-CA-----G-AGA-TT-T-G-TA--AG-T----GTC-G-TA-TTTAAATTTC-A-GGC--A---TTA--AACAAT-G-----------TT--TCTAA-CAA--C-T-A---AT--AGAC--AAA-CCAGAAA----GA-----AACA-GGTTTTCa
gi|11 : aaactGAA-GTA-TA-AT-TGT-GT-TT-T---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGC--A---TGA--AACAAT-GT----------TT--TC-AA-CAAAGC-T-A---AT--AGAC-AAAA-CCGGAAA----GG-----AACAGGGTTTTCC
gi|12 : AAAGAA-GCT-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT----------------------A--AACAAT-G-----------TT--TCTAA-CAAAGC-TAA---AT--AGAC-AAAA-TCGGAAA----GG-----AACATGGTTtg
gi|13 : aaaacttgAAAGAG---C-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-TC-T-G-T--CAGCT----GTC----A-TT-AATTT-C-A-GGC--A---TGA--A--AAT-G-----------TT--TCTAA-CAAG---T-G---TT--AGAC-AAAG-CCAGAAA----GG------AC--GGTTT
gi|14 : aacttgAAAGAG---C-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-TC-T-G-T--CAGCT----GTC----A-TT-AATTT-C-A-GGC--A---TGA--A--AAT-G-----------TT--TCTAA-CAAG---T-G---TT--AGAC-AAAG-CCAGAAA----GG------AC--GGTTT
gi|15 : aacttgAAGAA-GCC-TA-AT-TGTTGT-TT-A---TT-GCTT-TAAT-----T--TT-TAT---A-CA-----G-AGA-TT-T-GTTA-CAG-T----GTC-A-TA-TA-AATTT-CAA-GGCA-A---TGA--AACAAT-GT----------TT--
gi|16 : aacttgC-TACAT-TGT-GT-TT-A---T--G-TT-TAAC-----TCCTT-TATG--A-CA-----G-AGA-CTGC-G-TA-CAG-T----GTC-ACTA-TT-ACATT-C-T-GGC--A---TGA--AACAAT-GT----------c
gi|17 : tC--A---TGA--AACAATTGT----------TT--TCTAAACAAAGC-T-A---AT--AGAT-AAAA-CCGGAAA----GG-----AAGAGGG-TTTCCGG
gi|18 : AAT-GT----------TT---CTAA-CAAAGC-T-A---AT--ACAC-AAAA-CCGGAAAATGCGGAAATTAACAGGGTTTTCCAGg
gi|19 : AAAGAA-GTA-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CN-----G-Ag
gi|2 : taaaagcttgaaaaAAAAA-GCCCTA-CA-TAT-GT-TC-A---AT-G-TT-TATC-----T--TT--AT---GGCA-----G-AGA-CA-T-G-TA-CA--T----GTC-A-TA--T-AAATT-T-AGGGT--A---TTT--ACCAAT-GT----------TTCATATAG-CACGGCAT-AAACATTAAGAC-AAAACCCGGAAA----GGA----AACGGGGTTTTCCGG
gi|20 : atactgtgAAAGAA-GCC-TA-TA-TGT-GT-TT-A---TT-G-TT-TAAC-----g
gi|3 : aaaacttgAAAGAATGCC-TG-AT-TGT-AT-TT-A---TT-G-TA-TTAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-TACATGTC-A-TA-TT-AAATT-C-A-GAC--A---TGA--AACAAT-G-----------TT--TCTAA-CAAAGC-T-A---AT--AGACAAAAA-CCGGAAA----GG-----AACAGGGTTTTCCAG
gi|4 : aaaacttgAAGAA-GCC-TA-AAATGTTGT-TT-A---TTTG-TT-TAACCTATTT--TT-TATCTAA-CA-----G-AGAACT-TAG-TAACGG-G----GTC-A-TA-TC-AAATT-C-A-GGC--AT--TTA--AACAA---C----------TT--TCTAA-CAAA-C-T-A---AT--A-AC---AA-CCGG-AA----GG-----AACAGGGTTTTCTGG
gi|5 : actcgAAAGAA-GCC-TA-AT-TAT-GT-TT-A---TT-T-TT-TAAC-----T--TT-TAT---A-CA-----G-AGT-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGCTTAAATTAA--AACAAT-G-----------TT--TCTAA-CAAAGC-T-A---AT--GGAC-AAAA-CCGGAAA----GG-----AACATGGTTTTCCGG
gi|6 : aaacttgAAAGAA-GCC-TA-AA-TGT-GT-TT-A---TT-G-TT-GAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGC--ATT-TAATTAACAAT-G------------T--TCTAA-CAAAGG-T-A---AT--AGAC-AAAA-CC-CAAA----AG-----AACAGGGTTTTCCGG
gi|7 : aaaacttgAAAGAA-GCC-TA-AA-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-GAATT-C-A-GGC--A---TTT--AACAAT-GTTTCTA-----TT--TCTAA-CAAAGC-T-A---AT--AAAC-AAAA-CCTGAAA----GG-----AACAGGGTTTTCCGG
gi|8 : AAAGAA-GCC-TA-AA-TGT-GT-TTCA---TT-G-TT-TAA---------TT-TAT---A-CA-----G--GA-CT-T-A-TA-CA--T----GTCTA-TAATT-AAATT-C-A-G-C--A---TTT--AACAAT-GT----------TT---CTAA-CAAAGC-T-A---AT--AGAC-AAAA-CCGGAAA----GG-----AACAGGGTTTTCCGG
gi|9 : aaacttgAAAGAA-GCC-TA-AT-TGT-GT-TT-AATATT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GG--------------CAAT-G-----------TT--TCTAA-CAAAGC-T-A---AT--AATT-AAAA-CCGGAAA----GG-----AAAAGGGTTTTCCG
blockSeqs : T C C AA T A C ATA T C C CTATT CC C CTA G . . A G A T A C ACAT AC A T T A G TT AAT T TT T TTTCTA CA A A A AAC TA A C ATGC AAATT
blockSeqs : . . . G T . . . . . . . . . G . . . . . . . . C . TA . . . . . A TT G . . T . . . . . . . . . A
blockSeqs : . . . T . . . . . . . . . . . . . . . . . . . . . G . . . . . . T G . . T . . . . . . . . . .
blockSeqs : . . . T . . . . . . . . . . . . . . . . . . . . . A . . . . . . . G . . T . . . . . . . . . .
blockSeqs : . . . T . . . . . . . . . . . . . . . . . . . . . A . . . . . . . G . . T . . . . . . . . . .
blockSeqs : . . . T . . . . . . . . . . . . . . . . . . . . . A . . . . . . . G . . T . . . . . . . . . .
blockSeqs : . . . T . . . . . . . . . . . . . . . . . . . . . A . . . . . . . G . . T . . . . . . . . . .
blockSeqs : . . . T . . . . . . . . . . . . . . . . . . . . . A . . . . . . . T . . C . . . . . . . . . .
blockSeqs : . . . T . . . . . . . . . . . . . . . . . . . . . A . . . . . . . G . . T . . . . . . . . . .
blockSeqs : . . . A . . . . . . . . . . . . . . . . . . . . . A . . . . . . . T . . . . . . . . . . . . .
blockSeqs : . . . A . . . . . . . . . . . . . . . . . . . . . A . . . . . . . A . . . . . . . . . . . . .
blockSeqs : . . . T . . . . . . . . . . . . . . . . . . . . . A . . . . . . . A . . . . . . . . . . . . .
blockSeqs : . . . T . . . . . . . . . . . . . . . . . . . . . A . . . . . . . T . . . . . . . . . . . . .
blockSeqs : . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . .
blockSeqs : . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . A . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . .
blockSeqCons : ***** T**********
originalCons : AAAGAA-GCC-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGC--A---TGA--AACAAT-GT----------TT--TCTAA-CAAAGC-T-A---AT--AGAC-AAAA-CCGGAAA----GG-----AACAGGGTTTTCCGG
finalCons : AAAGAA-GCC-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGC--A---TGA--AACAAT-GT----------TT--TCTAA-CAAAGC-T-A---AT--AGAC-AAAA-CCGGAAA----GG-----AACAGGGTTTTCCGG
Alignments
lowQualScore : 22222222222
lowQualScore : 2 2 2 33 4 2 2 333 2 2 2 55555 33 2 666 2 55555 2 2 2 2 2 2 5 5555 333 2 2 2 2 2 55 999 2 33 2 88888888888 33 2 0 2 2 444 33 2 2 5555 88888
lowQualScore : . . . .. . . . ... . . . ..... .. . ... . ..... . . . . . . . .... ... . . . . . .. ... . .. . ........... .. . . . . ... .. . . .... .....
lowQualScore : 4 2 2 22 4 2 2 999 2 2 2 66666 22 4 555 4 99999 4 5 5 5 5 5 0 3333 111 5 5 5 5 5 66 777 2 22 2 99999999999 22 5 9 5 5 444 44 5 5 3333 88888
consensus : AAAGAA-GCC-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGC--A---TGA--AACAAT-GT----------TT--TCTAA-CAAAGC-T-A---AT--AGAC-AAAA-CCGGAAA----GG-----AACAGGGTTTTCCGG
Reference ( family-450 ) : AAAGAA-GCC-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGC--A---TGA--AACAAT-GT----------TT--TCTAA-CAAAGC-T-A---AT--AGAC-AAAA-CCGGAAA----GG-----AACAGGGTTTTCCGG
gi|1 : AAAGAA-GCC-TA-AT-TTT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CATACATGTAGA-AT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGC--A---TGA--AACAAT-GTGTACAAGCTGTT--TCTAA-CAAAGC-T-A---AT--GAAC-GATA-CCAGAAA----GG-----AACAGGGTTTTCC
gi|10 : aaactttAAAGAA---C-CA-AG-TG--GTATT-A------G-TTCTAAC-----T--TTCTAT---A-CA-----G-AGA-TT-T-G-TA--AG-T----GTC-G-TA-TTTAAATTTC-A-GGC--A---TTA--AACAAT-G-----------TT--TCTAA-CAA--C-T-A---AT--AGAC--AAA-CCAGAAA----GA-----AACA-GGTTTTCa
gi|11 : aaactGAA-GTA-TA-AT-TGT-GT-TT-T---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGC--A---TGA--AACAAT-GT----------TT--TC-AA-CAAAGC-T-A---AT--AGAC-AAAA-CCGGAAA----GG-----AACAGGGTTTTCC
gi|12 : AAAGAA-GCT-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT----------------------A--AACAAT-G-----------TT--TCTAA-CAAAGC-TAA---AT--AGAC-AAAA-TCGGAAA----GG-----AACATGGTTtg
gi|13 : aaaacttgAAAGAG---C-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-TC-T-G-T--CAGCT----GTC----A-TT-AATTT-C-A-GGC--A---TGA--A--AAT-G-----------TT--TCTAA-CAAG---T-G---TT--AGAC-AAAG-CCAGAAA----GG------AC--GGTTT
gi|14 : aacttgAAAGAG---C-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-TC-T-G-T--CAGCT----GTC----A-TT-AATTT-C-A-GGC--A---TGA--A--AAT-G-----------TT--TCTAA-CAAG---T-G---TT--AGAC-AAAG-CCAGAAA----GG------AC--GGTTT
gi|15 : aacttgAAGAA-GCC-TA-AT-TGTTGT-TT-A---TT-GCTT-TAAT-----T--TT-TAT---A-CA-----G-AGA-TT-T-GTTA-CAG-T----GTC-A-TA-TA-AATTT-CAA-GGCA-A---TGA--AACAAT-GT----------TT--
gi|16 : aacttgC-TACAT-TGT-GT-TT-A---T--G-TT-TAAC-----TCCTT-TATG--A-CA-----G-AGA-CTGC-G-TA-CAG-T----GTC-ACTA-TT-ACATT-C-T-GGC--A---TGA--AACAAT-GT----------c
gi|17 : tC--A---TGA--AACAATTGT----------TT--TCTAAACAAAGC-T-A---AT--AGAT-AAAA-CCGGAAA----GG-----AAGAGGG-TTTCCGG
gi|18 : AAT-GT----------TT---CTAA-CAAAGC-T-A---AT--ACAC-AAAA-CCGGAAAATGCGGAAATTAACAGGGTTTTCCAGg
gi|19 : AAAGAA-GTA-TA-AT-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CN-----G-Ag
gi|2 : taaaagcttgaaaaAAAAA-GCCCTA-CA-TAT-GT-TC-A---AT-G-TT-TATC-----T--TT--AT---GGCA-----G-AGA-CA-T-G-TA-CA--T----GTC-A-TA--T-AAATT-T-AGGGT--A---TTT--ACCAAT-GT----------TTCATATAG-CACGGCAT-AAACATTAAGAC-AAAACCCGGAAA----GGA----AACGGGGTTTTCCGG
gi|20 : atactgtgAAAGAA-GCC-TA-TA-TGT-GT-TT-A---TT-G-TT-TAAC-----g
gi|3 : aaaacttgAAAGAATGCC-TG-AT-TGT-AT-TT-A---TT-G-TA-TTAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-TACATGTC-A-TA-TT-AAATT-C-A-GAC--A---TGA--AACAAT-G-----------TT--TCTAA-CAAAGC-T-A---AT--AGACAAAAA-CCGGAAA----GG-----AACAGGGTTTTCCAG
gi|4 : aaaacttgAAGAA-GCC-TA-AAATGTTGT-TT-A---TTTG-TT-TAACCTATTT--TT-TATCTAA-CA-----G-AGAACT-TAG-TAACGG-G----GTC-A-TA-TC-AAATT-C-A-GGC--AT--TTA--AACAA---C----------TT--TCTAA-CAAA-C-T-A---AT--A-AC---AA-CCGG-AA----GG-----AACAGGGTTTTCTGG
gi|5 : actcgAAAGAA-GCC-TA-AT-TAT-GT-TT-A---TT-T-TT-TAAC-----T--TT-TAT---A-CA-----G-AGT-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGCTTAAATTAA--AACAAT-G-----------TT--TCTAA-CAAAGC-T-A---AT--GGAC-AAAA-CCGGAAA----GG-----AACATGGTTTTCCGG
gi|6 : aaacttgAAAGAA-GCC-TA-AA-TGT-GT-TT-A---TT-G-TT-GAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GGC--ATT-TAATTAACAAT-G------------T--TCTAA-CAAAGG-T-A---AT--AGAC-AAAA-CC-CAAA----AG-----AACAGGGTTTTCCGG
gi|7 : aaaacttgAAAGAA-GCC-TA-AA-TGT-GT-TT-A---TT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-GAATT-C-A-GGC--A---TTT--AACAAT-GTTTCTA-----TT--TCTAA-CAAAGC-T-A---AT--AAAC-AAAA-CCTGAAA----GG-----AACAGGGTTTTCCGG
gi|8 : AAAGAA-GCC-TA-AA-TGT-GT-TTCA---TT-G-TT-TAA---------TT-TAT---A-CA-----G--GA-CT-T-A-TA-CA--T----GTCTA-TAATT-AAATT-C-A-G-C--A---TTT--AACAAT-GT----------TT---CTAA-CAAAGC-T-A---AT--AGAC-AAAA-CCGGAAA----GG-----AACAGGGTTTTCCGG
gi|9 : aaacttgAAAGAA-GCC-TA-AT-TGT-GT-TT-AATATT-G-TT-TAAC-----T--TT-TAT---A-CA-----G-AGA-CT-T-G-TA-CAG-T----GTC-A-TA-TT-AAATT-C-A-GG--------------CAAT-G-----------TT--TCTAA-CAAAGC-T-A---AT--AATT-AAAA-CCGGAAA----GG-----AAAAGGGTTTTCCG