lowQualScore : 1111111111111111111111111111111111
lowQualScore : 1 44444444 88888888888888888888888888 11 444444444444444444444444444 1 1 1 1111111111111111111111111111111111 111 11 11 2222 88888888888888888 1 1111 22222222 1111 1 111111 444444444444444444444 11 11 11 44444444444444444444444444 11 2222 555555555 2222222222222222 111 33
lowQualScore : 3 77 6 22222222 0 88888888888888888888888888 7 77 55 2 3 0 33 333333333333333333333333333 7 0 5 0 6 0 9 7 1111111111111111111111111111111111 8 33 888 11 7 1 88 7 6 9 3333 1 22222222222222222 4 1 7 88 5 6 3333 66666666 3 6 0 6666 2 7 66 5 5 999999 111111111111111111111 22 66 44 4 44 3 3 0 55555555555555555555555555 00 3 2222 7777 3 333333333 55 55 2222222222222222 000 888 33 4
lowQualScore : . .. . ........ . .......................... . .. .. . . . .. ........................... . . . . . . . . .................................. . .. ... .. . . .. . . . .... . ................. . . . .. . . .... ........ . . . .... . . .. . . ...... ..................... .. .. .. . .. . . . .......................... .. . .... .... . ......... .. .. ................ ... ... .. .
lowQualScore : 3 33 0 33333333 7 00000000000000000000000000 3 33 55 5 2 2 88 555555555555555555555555555 0 2 0 2 0 0 2 0 2222222222222222222222222222222222 8 22 888 00 3 0 33 3 0 7 0000 0 33333333333333333 0 0 3 00 0 0 0000 77777777 5 0 6 3333 2 9 99 0 0 666666 777777777777777777777 33 11 33 0 77 2 2 7 22222222222222222222222222 00 6 9999 7777 6 555555555 00 00 1111111111111111 222 333 44 4
consensus : GGTCACTTC-TATTTCTTTGTCTACATCCGT-C-GTA--GATGAGCTAAG--T-CAAA-TA-TGAGC--CTAAANTTACATTCTTGAAGTAGAANCGATAGTTGATATGT--CAATAAANCCAGAGCCTTCACCCCGCGAGGN---ACAGGAAATCAACACCCCGTACGCAACA-TCCAATTTTGAAG----------------------ATTTTGNCTTTACTGAACGTATTTTTAATNCCAAATGATGAAGAANATGCGTTTTCTGAACA--TTTCAGAAGTTTTGGACCATTAGTTGTT--CGGACGCAAGCTTTTNA-TGTAAGAT--C-A-GCAAACTGGGTGATGTTTTGTTTTTTGAGCCGGATTCTCAAATTGGGCGGAGGTGTTTGCNAAAA-CTGC---GAGGCATACGTTTACTTTGTCGTT--T-G-TTTAAGAAACCCTT--A--TTAT-GC-----C-----T------TCCTTCCGTG--CAGTAATAGGTTTAAT-CANNCAATGGATCCTTTTTGTAAAN----ATTGGAAATGAAC---TCACCTC--GTCCGCTGCCGAA-GCGG--TGAAAAAT----C-AAC-A-C--CCC--GGTCGG--CGCATCACT--------------AACACCC-CGAATG--TTCCGTTGG-ACGCGGTGA
Reference ( gi|1 ) : GGTCACTTC-TATTTCGCTGTCTGCATCCAT-C-TTG--GATGAGCCAAA-ATTCAAAATAATGAAC-TTTATTGTTACATTCTTGAAGTAGAACCGATAGTTGATATGT--CAATAAAACCAGAGCCTTCACCCTGTGAGGA---ACAGGAAATCATCACCGCGTACGCAATA-TCCAATTTTGAAG----------------------ATCTTGTCTCTACTGAATGTATTTTCAACATCAAATGATGAAGAACATGTGTTTTCTAAACA--TTTCAGAAGTTTTGGACCATTGGTTATT--TGGATGTAAGCTTTTGATCGTAAGATATTTACGCAAATTGGGTAATGTTTTGTTTTCTGAGGCGGATTCTCAAATTGGGCGAAGGTGTTAGCCAAAA-TGGC---AAAGTATACACCTGCTTTATCGCT--T-G-TTTAAGAAACCCTC--A--TTAT-CC-----C-----T------TCCTTTTGTG--CAGTAATACATTTAAT-CAGACAATGGATCCTTTTTGTAAAC----ATTGCAAATAAAA---TCAAATC--GTCCGCTGCCGAA-GCGG--AAAAAAAT----C-A---T-C--TCC--GGTCGG--CGCATCACC--------------AACACCC-TGAATG--CTAGGTTGG-ACGCGGTGA
gi|3 : GGTTTCTTC-TATTTCTTTGTCTACATCCAT-C-GAA--GATTAGTTACGTAT--AAAATAATGAAC-ACTAAACTTACATTCTTAAAGTAGAAATGAGAGTTGATATTT--CTATATACCCAGAACCTTGACCCCATGAAGC---GCAGGAAATCAACACCCCGTACCCAACA-ACCCATTTTG-AG----------------------GTTTTGGCTTTACTGGGCGTATTTATAATGTCATATCATGAAGAAC--GTGTTTTCTGAACATCTTTC--AAGTTCTGGACAATTAGCTTTT--TTGATGTAAACTTTTA------------TTA-GCAAACTGGGTAATGTTT--TCTTC-GAGTCGGATTCTCAAATTGTCCGGCGGTATTTG-CAAAA-TTTT---GAGGCATTCGTTGACTTGGCTG-T--T-G-TGTATAACACCATTAAA--TTAT-GT-----C------------TCCTTTCGTG--CATTAATAGGTTTAAT-CATCCAAAGGATCCTTTTTGTAAATAAAAAATGGAAATAAAC---TCCTCTT--GTCTGCTGCCGAA-ACGG--TGAAAAAT----C-AAC-T-C--CCC--GA-CGG--TGCATCACT--------------AGTGCCC-CAAGTG--TTTCCTTGA-ACGCGGTG
gi|2 : ttgtagtGGTCACTTCCTATTTCTTTTTCTACATGCATGCATTGTAGATGATCTAAG--TACAAATTATTGAGCATTTAAAAT-ACATTCTTGAAATAGAAGTGATA--T-ACATGTACCAAGAAACCCAGAGCCTTCACCCCACGATAA---ACAGGAAGTCAACATCTCCTATGCAACAATTCA-TTTTGAAG----------------------AT------------AAACGTATTTTTATTGCCAAATGATGAAGAATATGTGTTTTCGGAGCA--TCTTAGAAGTTTTGGACCATTAGTTGTTACCACACGCAAGCTTTTCAGTGTAAGAT------------TGGGTGATGTTGTGTTTTTTTAACCGACTTCTCAAATTGGGAGGAAGTGTTTGC-AAAA-CTGC---AAGGCATACGTCTACTTTATCGTT--T-G-TTTAAGAAACAATT--A--TTAT-GT-----C-----T------TCCTTCCGTGTATAGGAGCATCTTTAAT-CAGACAATG------------AAAC------------TGAAC---TC--ATCCTGTCCGCTGCCGAG-GCGG--TGAAAAAT----C-AAC-A-C--CCC--GGTCAG--CGCATCATC--------------AACATCC-
gi|4 : atttttgtatagaactaggatatatagtcggagcatgaacatgtgcttgtaaaGGTCAATTC-TATTTAGCTGTCTACATCTGT-C-GTA--GATGAGCCAAA--TTCAAA---------------TGTTACATTCTTGAAGTAGAACCGATAGGTGATATGC--CAATAAAACT------------------GGC---AGAGGAAATCAACACCCCGTATGTAACA-TCCAATTTTGGAGGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACTGAAAGCATTTTCAATCCCAAATGATGAAAAAAATGCGTTT-CTAAAAA--ATTCAGAAGTTTTGGACCATTAGTTGTT--CGGATGCAAGCTTTTTATTGTAAGATCTCGACGCAAATga
gi|13 : agtAGTTGAT-TAT--CAATAAAA---AAG---TCAGCCCGTGAGAATTAACTGGAAATCAACAACTCATACGCAACA-TCTACTTTTGAAG----------------------ATTTTATTTATTCTGAACGTATTTCTAATCCCCAATGATAA
gi|5 : GGATGATGTTTTGTTTTTTGAGCCAGATTCTCAAATTGGGCGGAGGTGTTAGCAAAAACTAG----GAGGCATACGTGTACTTTGTCGATGATAG-TTTTAGAAACCCTT--A--TTATGCC-----CTCGAAT------TCCTTCCTTG--CAGTAATAGGTTTAAT-CACTCAATGCATCTTTGTTA-AAAT----TTTGGAAATGTAG---TCACCTC--GTCCGCTGCCGAA-ACTA--TAAAAAAT----C-AAC-A-C--CCC--GGTCGT--CGCATCACC--------------AACACTC-CGAATG--TTCCGTTGG-ACGCGGTGA
gi|6 : GTATTTGCAAAAC-CGGCTGAAAGGCATACATTTACTTTGTCGTT--T-GGTTTTAGAAACCCTT--A--TTAT-ACATGTAC-----TGTATATTCCTTCCGTG--TAGTAATAGATTTAAT-AAGACAATGGATCCTTTTTGTAAAA----ATTGGAAATGAAC---TCGCCTT--GTCTGCTGCCGAA-GCGG--TGAAAAAT----C-AAC-A-C--CCC--GGGCGG--AGCATCGCT--------------AA-ACCA-CAAATG--TTCTGTTGG-ACGCGGTGa
gi|7 : CAAAA-TTGT---GAAGCATTTGTTAACTTTGCCA-T--T-G-TGTAAAATACCATT--AAATTAT-GC-----C-----T------TTCTTCCGTG--CAGTAATAGGTTTAAT-CATCCTATGGATCCTTTTTGTAAAA----AATGGAAATAAA-----CACCTCTTGTCTGCTGCTGAA-GCTG--TGAAAAAT----C-AAC-A-C--GCC--GGTCGG--TGCATCACT--------------AACAACC-CAAGTA--TT-TCTCAA-ACGCGGTGA
gi|12 : atttgAAAA-CTAC---AAGGCATGTATTTCCCTTATCA-T--T-G-TTTAAGAAACCCT-------TAT-GT-----C-----T------TCCTTCCGTG--CAATGATAGAGTTGAT-CATCCAATGGATCTTTTTTGTAAAA----ACTGGAAATGAAC---TCATCTT--GTCCGC
gi|11 : aATAAATCCACTTTGTCGCT--T-G-TTTAAGAAACCCTT--A--
gi|10 : gTTGTCGTT--T-G-TTTAGGAAACCCT-------------------------------TCC----GTG--TAGTAATAGATTCAATACA-ACAATGGATCCTTTT------C----CTT---------A---TC---TT--GTCTTC-GCCGAA-ACGG--TGAAAAAT----C-AACAT-C--TC----GTCGG--CGCATCACT--------------GACACCC-CAAATG--TTTCGTTGG-ACACGGTGAatcagacaatggatcccttttgttaaaattggaaatgaactcatctcgtccgctgttgatgcggtgaaaaatcaataccccagtcggcggatcaccaattttaaagttaaaacaccccgaatgc
gi|9 : acaactactttcaaATCCTT--A--TTAT-GC-----C-----T------TCCTTCCGTG--CAGTAAGGGATTTAAT-CACGCAATGCATC-TTTTTGTTAAG----ATTGGAAACGAAC---TCACTTC--GACCGCTGCCGAA-GCGG--TGAAGAATTCAAC-A-----C--CCT--GGTCGG--CGCAT---C--------------AACACCA-TGAATG--TTCCGTTGG-ACGC
gi|8 : aacatcCCTT--A--TTAT-GC-----C-----T------TCCTACCGTG--CAGTAATAGGTTTAAT-CATCCATTGGATCATTTT-GTAAAA----ATGG-AAATAAACGCCTC---TT--GTCTGCTGCTGAA-GCGG--TGAAAAAT----C-A---A-C--ACCTCGGTCGG--CGCATCAGT--------------AATACCC-CAAGTG--TTTCTTTGG-ACTTGGTGaa
gi|11 : taaaaactttggTTAAT-CAGACAATGGATCCCTTTTGTTAAA----ATTGGAAATGAAC---TCATCTC--GTCCGCTGTTGAT-GCGG--TGAAAAAT----CAA---TAC--CCC--AGTCGG--CGGATCACCAATTTTAAAGTTAAAACACCC-CGAATG--C
gi|14 : gataaatccactttgtcgcttgtttaagaaacccTC--GTCCA-TGCTGAACGTGGTGAATAAAAT----C-AAC-A-C--CCC--GGTCCGATCGCATTA-T--------------AACACCCACCAATGTTCT-GGTTGGAACACGGTGA
gi|15 : cacaattgtacTCCACTGCTGAA-GTGG--TGAAAAAT----C-A---A-CACCCC--GGTCGA--CGCATTACT--------------AACACCC-CAAATG--TTCTGTTGG-ACACGGTGAgagt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): TTTATGTCTATAGAACTGATATGGAGTATAATCGGAACACAAAATTGTGCATGGCA
Alignments
lowQualScore : 1 1 111 888888888888888888888888888888 11 1111 7777777777777777777777777 11 11 444444444444444444 2 111 1111 2222222222222222222 111111 11111111111111
lowQualScore : 0 3 0 777 2 222222222222222222222222222222 3 1 0 0 11 8 0 555 66 5555 1 8 5 3 3 5555555555555555555555555 4 1 1 44 2 3 33 3 0 33 0 2 000000000000000000 3 9 0 0 000 1 2 2222 4 55555 3333333333333333333 111111 22 2 7777 333 1 44 3 44 3 44 99999999999999 3 1 4 4
lowQualScore : . . . ... . .............................. . . . . .. . . ... .. .... . . . . . ......................... . . . .. . . .. . . .. . . .................. . . . . ... . . .... . ..... ................... ...... .. . .... ... . .. . .. . .. .............. . . . .
lowQualScore : 0 0 0 555 0 888888888888888888888888888888 2 0 6 8 00 8 8 666 00 0000 4 0 6 8 8 6666666666666666666666666 0 0 0 22 0 2 88 2 2 88 2 0 666666666666666666 7 2 2 5 000 7 7 4444 4 55555 8888888888888888888 555555 00 0 7777 777 0 66 3 66 3 66 66666666666666 3 0 0 0
consensus : GGTCACTTC-TATTTCNCTGTCTACAT-C---CGTCGTAGATGAGCCAAG--T-C--AAA-T-AAT-GAACA-TTAAAN-TTACATTCTTGAAGTAGAANCGATAGTTGATATGT--CAATAAANCCAGAGCCTTCACCCCGTGAGGA---ACAGGAAATCAACACCCCGTACGCAACA-TCCAATTTTGAAGATTTTGTC----------------------TTTACTGAACGTATTTTTAATNCCAAATGATGAAGAACATGTGTTTTCTGAACA--TTTCAGAAGTTTTGGACCATTAGTTGTT--CGGATGCAAGCTTTTNA-T-GTAAGA---TTA-GCAAACTGGGTGATGTTTTGTTTTTTGAGCCGGATTCTCAAATTGGGCGGAGGTGTTTGC-AAA---ACTGCGAGGCATACGTCTACTTTGTCGTT--T-G-TTTAAGAAACCCTT--A--TTATGC-----C------T------TCCTTCCGTGCAGTAATAGG------TTTAATCANNCAATGGATCCTTTTTG----TAAAAATTGGAAATGAACTCATCTC--GTCCGCTGCCGAA-GCGGTGAA--AAA-TCAACACCCCGGTCGG--CGCATCACT--------------AACACCC-CGAATGTTCC-GTTGG-ACGCGGTGA
Reference ( family-4468 ) : GGTCACTTC-TATTTCTTTGTCTACAT-C---CGTCGTAGATGAGCTAAG--T-C--AAA-T-A-T-GAGC--CTAAAN-TTACATTCTTGAAGTAGAANCGATAGTTGATATGT--CAATAAANCCAGAGCCTTCACCCCGCGAGGN---ACAGGAAATCAACACCCCGTACGCAACA-TCCAATTTTGAAGATTTTGNC----------------------TTTACTGAACGTATTTTTAATNCCAAATGATGAAGAANATGCGTTTTCTGAACA--TTTCAGAAGTTTTGGACCATTAGTTGTT--CGGACGCAAGCTTTTNA-T-GTAAGA---TCA-GCAAACTGGGTGATGTTTTGTTTTTTGAGCCGGATTCTCAAATTGGGCGGAGGTGTTTGCNAAA---ACTGCGAGGCATACGTTTACTTTGTCGTT--T-G-TTTAAGAAACCCTT--A--TTATGC-----C------T------TCCTTCCGTGCAGTAATAGG------TTTAATCANNCAATGGATCCTTTTTG----TAAANATTGGAAATGAACTCACCTC--GTCCGCTGCCGAA-GCGGTGAA--AAA-TCAACACCCCGGTCGG--CGCATCACT--------------AACACCC-CGAATGTTCC-GTTGG-ACGCGGTGA
gi|1 : GGTCACTTC-TATTTCGCTGTCTGCAT-C---CATCTTGGATGAGCCAAAATT-C--AAAAT-AAT-GAAC--TTTATTGTTACATTCTTGAAGTAGAACCGATAGTTGATATGT--CAATAAAACCAGAGCCTTCACCCTGTGAGGA---ACAGGAAATCATCACCGCGTACGCAATA-TCCAATTTTGAAGATCTTGTC----------------------TCTACTGAATGTATTTTCAACATCAAATGATGAAGAACATGTGTTTTCTAAACA--TTTCAGAAGTTTTGGACCATTGGTTATT--TGGATGTAAGCTTTTGA-TCGTAAGATATTTACGCAAATTGGGTAATGTTTTGTTTTCTGAGGCGGATTCTCAAATTGGGCGAAGGTGTTAGCCAAA---ATGGCAAAGTATACACCTGCTTTATCGCT--T-G-TTTAAGAAACCCTC--A--TTATCC-----C------T------TCCTTTTGTGCAGTAATACA------TTTAATCAGACAATGGATCCTTTTTG----TAAACATTGCAAATAAAATCAAATC--GTCCGCTGCCGAA-GCGGAAAA--AAA-TCA--TCTCCGGTCGG--CGCATCACC--------------AACACCC-TGAATGCTAG-GTTGG-ACGCGGTGA
gi|10 : TTGTCGTT--T-G-TTTAGGAAACCCTT-----------------------------------CCGTGTAGTAATAGA------TTCAATACAACAATGGATCCTTTTC----------------------CTTATCTT--GTCTTC-GCCGAA-ACGGTGAA--AAA-TCAACATCTCG-TCGG--CGCATCACT--------------GACACCC-CAAATGTTTC-GTTGG-ACACGGTGA
gi|11 : acaactactttcaaATAAATCCACTTTGTCGCT--T-G-TTTAAGAAACCCTT--A--
gi|11 : gTTAATCAGACAATGGATCCCTTTTG----TTAAAATTGGAAATGAACTCATCTC--GTCCGCTGTTGAT-GCGGTGAA--AAA-TCAATACCCCAGTCGG--CGGATCACCAATTTTAAAGTTAAAACACCC-CGAATGatcagacaatggatcccttttgttaaaattggaaatgaactcatctcgtccgctgttgatgcggtgaaaaatcaataccccagtcggcggatcaccaattttaaagttaaaacaccccgaatgc
gi|12 : gataaatccactttgtcgcttgtttaagaaacccAAA---ACTACAAGGCATGTATTTCCCTTATCATT----G-TTTAAGAAACCCTT--A--T---GT-----C------T------TCCTTCCGTGCAATGATAGA------GTTGATCATCCAATGGATCTTTTTTG----TAAAAACTGGAAATGAACTCATCTT--GTCCGCc
gi|13 : aAGTTGAT-TAT--CAATAAA---AAAG---TCAGCCCGTGAGAATTAACTGGAAATCAACAACTCATACGCAACA-TCTACTTTTGAAGATTTTATT----------------------TATTCTGAACGTATTTCTAATCCCCAATGATAA
gi|14 : CTC--GTCCA-TGCTGAACGTGGTGAATAAAA-TCAACACCCCGGTCCGATCGCATTA-T--------------AACACCCACCAATGTTCTGGTTGGAACACGGTGA
gi|15 : cacaattgtaTCCACTGCTGAA-GTGGTGAA--AAA-TCAACACCCCGGTCGA--CGCATTACT--------------AACACCC-CAAATGTTCT-GTTGG-ACACGGTGAgagt
gi|2 : GGTCACTTCCTATTTCTTTTTCTACATGCATGCATTGTAGATGATCTAAG--TAC--AAA-TTA-TTGAGCATTTAAAA-T-ACATTCTTGAAATAGAAGTGATA--T-ACATGTACCAAGAAACCCAGAGCCTTCACCCCACGATAA---ACAGGAAGTCAACATCTCCTATGCAACAATTCA-TTTTGAAGAT----------------------------------AAACGTATTTTTATTGCCAAATGATGAAGAATATGTGTTTTCGGAGCA--TCTTAGAAGTTTTGGACCATTAGTTGTTACCACACGCAAGCTTTTCAGT-GTAAGA---T---------TGGGTGATGTTGTGTTTTTTTAACCGACTTCTCAAATTGGGAGGAAGTGTTTGC-AAA---ACTGCAAGGCATACGTCTACTTTATCGTT--T-G-TTTAAGAAACAATT--A--TTATGT-----C------T------TCCTTCCGTGT----ATAGGAGCATCTTTAATCAGACAATG----------------AAAC--------TGAACTCATCCT--GTCCGCTGCCGAG-GCGGTGAA--AAA-TCAACACCCCGGTCAG--CGCATCATC--------------AACATCC-
gi|3 : atttttgtatagaactaggatatatagtcggagcatgaacatgtgcttgtaaaGGTTTCTTC-TATTTCTTTGTCTACAT-C---CATCGAAGATTAGTTACG--T-ATAAAA-T-AAT-GAACA-CTAAAC-TTACATTCTTAAAGTAGAAATGAGAGTTGATATTT--CTATATACCCAGAACCTTGACCCCATGAAGC---GCAGGAAATCAACACCCCGTACCCAACA-ACCCATTTTG-AGGTTTTGGC----------------------TTTACTGGGCGTATTTATAATGTCATATCATGAAGAAC--GTGTTTTCTGAACATCTTTC--AAGTTCTGGACAATTAGCTTTT--TTGATGTAAACTTTT----------A---TTA-GCAAACTGGGTAATGTT---TTCTTCGAGTCGGATTCTCAAATTGTCCGGCGGTATTTGC-AAA---ATTTTGAGGCATTCGTTGACTTGGCTG-T--T-G-TGTATAACACCATTAAA--TTATGT-----C-------------TCCTTTCGTGCATTAATAGG------TTTAATCATCCAAAGGATCCTTTTTGTAAATAAAAAATGGAAATAAACTCCTCTT--GTCTGCTGCCGAA-ACGGTGAA--AAA-TCAACTCCCCGA-CGG--TGCATCACT--------------AGTGCCC-CAAGTGTTTC-CTTGA-ACGCGGTGga
gi|4 : ttgtagtGGTCAATTC-TATTTAGCTGTCTACAT-C---TGTCGTAGATGAGCCAAA--TTC--AAA-T----------------G-TTACATTCTTGAAGTAGAACCGATAGGTGATATGC--CAATAAAACT------------------GGC---AGAGGAAATCAACACCCCGTATGTAACA-TCCAATTTTGGAGGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACTGAAAGCATTTTCAATCCCAAATGATGAAAAAAATGCGTTT-CTAAAAA--ATTCAGAAGTTTTGGACCATTAGTTGTT--CGGATGCAAGCTTTTTATT-GTAAGA---TC
gi|5 : agtGGATGATGTTTTGTTTTTTGAGCCAGATTCTCAAATTGGGCGGAGGTGTTAGCAAAA---ACTAGGAGGCATACGTGTACTTTGTCGATGATAG-TTTTAGAAACCCTT--A--TTATGC-----CCTCGAAT------TCCTTCCTTGCAGTAATAGG------TTTAATCACTCAATGCATCTTTGTTA-----AAATTTTGGAAATGTAGTCACCTC--GTCCGCTGCCGAA-ACTATAAA--AAA-TCAACACCCCGGTCGT--CGCATCACC--------------AACACTC-CGAATGTTCC-GTTGG-ACGCGGTGAtcgacgcaaat
gi|6 : GTATTTGCAAAACCGGCTGAAAGGCATACATTTACTTTGTCGTT--T-GGTTTTAGAAACCCTT--A--TTATACATGTAC------TGTATATTCCTTCCGTGTAGTAATAGA------TTTAATAAGACAATGGATCCTTTTTG----TAAAAATTGGAAATGAACTCGCCTT--GTCTGCTGCCGAA-GCGGTGAA--AAA-TCAACACCCCGGGCGG--AGCATCGCT--------------AA-ACCA-CAAATGTTCT-GTTGG-ACGCGGTGa
gi|7 : TTTGC-AAA---ATTGTGAAGCATTTGTTAACTTTGCCATT----G-TGTAAAATACCATT--AAATTATGC-----C------T------TTCTTCCGTGCAGTAATAGG------TTTAATCATCCTATGGATCCTTTTTG----TAAAAAATGGAAATAAA--CACCTCTTGTCTGCTGCTGAA-GCTGTGAA--AAA-TCAACACGCCGGTCGG--TGCATCACT--------------AACAACC-CAAGTATTTC--TCAA-ACGCGGTGA
gi|8 : aCCTT--A--TTATGC-----C------T------TCCTACCGTGCAGTAATAGG------TTTAATCATCCATTGGATCATTTT-G----TAAAAAT-GGAAATAAACGCCTCTT--GTCTGCTGCTGAA-GCGGTGAA--AAA-TCAACACCTCGGTCGG--CGCATCAGT--------------AATACCC-CAAGTGTTTC-TTTGG-ACTTGGTG
gi|9 : taaaaactttggATCCTT--A--TTATGC-----C------T------TCCTTCCGTGCAGTAAGGGA------TTTAATCACGCAATGCATC-TTTTTG----TTAAGATTGGAAACGAACTCACTTC--GACCGCTGCCGAA-GCGGTGAA--GAATTCAACACCCTGGTCGG--CGCATC-----------------AACACCA-TGAATGTTCC-GTTGG-ACGC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTTATGTCTATAGAACTGATATGGAGTATAATCGGAACACAAAATTGTGCATGGCA
Alignments
lowQualScore : 1 1 111 3333333 11111111111111111 11 1111 7777777777777777777777777 11 11 33333 111 22 111111 11111 1111 2222222222222222222 111111 11111111111111
lowQualScore : 0 1 0 777 2 4444444 77777777777777777 1 0 0 11 8 0 555 1 4444 1 8 5 3 3 4444444444444444444444444 4 1 1 33 3 33 3 0 33 0 44444 777 00 3 9 0 6 444444 1 11111 2 2222 4 55555 3333333333333333333 111111 22 5 7777 2 7777 3 44 3 44 99999999999999 3 1 4 4
lowQualScore : . . . ... . ....... ................. . . . .. . . ... . .... . . . . . ......................... . . . .. . .. . . .. . ..... ... .. . . . . ...... . ..... . .... . ..... ................... ...... .. . .... . .... . .. . .. .............. . . . .
lowQualScore : 0 0 0 555 0 8888888 88888888888888888 0 6 8 00 8 8 666 4 6666 4 0 6 8 8 4444444444444444444444444 0 0 0 55 2 88 2 2 88 2 88888 555 77 7 2 2 7 777777 7 11111 7 4444 4 55555 8888888888888888888 555555 00 1 7777 5 7777 3 66 3 66 66666666666666 3 0 0 0
consensus : GGTCACTTC-TATTTCNCTGTCTACAT-C---CGTCGTAGATGAGCCAAG--T-C--AAA-TAAT-GAACATTAAAGTTACATTCTTGAAGTAGAANCGATAGTTGATATGT--CAATAAANCCAGAGCCTTCACCCCGTGAGGA---ACAGGAAATCAACACCCCGTACGCAACA-TCCAATTTTGAAGATTTTGTC----------------------TTTACTGAACGTATTTTTAATNCCAAATGATGAAGAACATGTGTTTTCTGAACA--TTTCAGAAGTTTTGGACCATTAGTTGTT--CGGATGCAAGCTTTTNA-T-GTAAGA---TTA-GCAAACTGGGTGATGTTTTGTTTTTTGAGCCGGATTCTCAAATTGGGCGGAGGTGTTTG-CAAAA-C----TGCGAGGCATACGTCTACTTT-----GTCGTT--T-G-TTTAAGAAACCCTT--A--TTATGC-----C------T------TCCTTCCGTGCAGTAATAGG------TTTAATCANNCAATGGATCCTTTTTG----TAAAAATT--GGAAATGAACTCATCTCGTCCGCTGCCGAA-GCGGTGAA--AAA-TCAACACCCCGGTCGG--CGCATCACT--------------AACACCC-CGAATGTTCC-GTTGG-ACGCGGTGA
Reference ( family-4468 ) : GGTCACTTC-TATTTCNCTGTCTACAT-C---CGTCGTAGATGAGCCAAG--T-C--AAA-TAAT-GAACATTAAANTTACATTCTTGAAGTAGAANCGATAGTTGATATGT--CAATAAANCCAGAGCCTTCACCCCGTGAGGA---ACAGGAAATCAACACCCCGTACGCAACA-TCCAATTTTGAAGATTTTGTC----------------------TTTACTGAACGTATTTTTAATNCCAAATGATGAAGAACATGTGTTTTCTGAACA--TTTCAGAAGTTTTGGACCATTAGTTGTT--CGGATGCAAGCTTTTNA-T-GTAAGA---TTA-GCAAACTGGGTGATGTTTTGTTTTTTGAGCCGGATTCTCAAATTGGGCGGAGGTGTTTG-CAAAA-C----TGCGAGGCATACGTCTACTTT-----GTCGTT--T-G-TTTAAGAAACCCTT--A--TTATGC-----C------T------TCCTTCCGTGCAGTAATAGG------TTTAATCANNCAATGGATCCTTTTTG----TAAAAATT--GGAAATGAACTCATCTCGTCCGCTGCCGAA-GCGGTGAA--AAA-TCAACACCCCGGTCGG--CGCATCACT--------------AACACCC-CGAATGTTCC-GTTGG-ACGCGGTGA
gi|1 : GGTCACTTC-TATTTCGCTGTCTGCAT-C---CATCTTGGATGAGCCAAAATT-C--AAAATAAT-GAACTTTATTGTTACATTCTTGAAGTAGAACCGATAGTTGATATGT--CAATAAAACCAGAGCCTTCACCCTGTGAGGA---ACAGGAAATCATCACCGCGTACGCAATA-TCCAATTTTGAAGATCTTGTC----------------------TCTACTGAATGTATTTTCAACATCAAATGATGAAGAACATGTGTTTTCTAAACA--TTTCAGAAGTTTTGGACCATTGGTTATT--TGGATGTAAGCTTTTGA-TCGTAAGATATTTACGCAAATTGGGTAATGTTTTGTTTTCTGAGGCGGATTCTCAAATTGGGCGAAGGTGTTAGCCAAAA-T----GGCAAAGTATACACCTGCTTT-----ATCGCT--T-G-TTTAAGAAACCCTC--A--TTATCC-----C------T------TCCTTTTGTGCAGTAATACA------TTTAATCAGACAATGGATCCTTTTTG----TAAACATT--GCAAATAAAATCAAATCGTCCGCTGCCGAA-GCGGAAAA--AAA-TCA--TCTCCGGTCGG--CGCATCACC--------------AACACCC-TGAATGCTAG-GTTGG-ACGCGGTGA
gi|10 : CTACTTTCAATTGTCGTT--T-G-TTTAGGAAACCCTT-----------------------------------CCGTGTAGTAATAGA------TTCAATACAACAATGGATCCTTTTC------------------------CTTATCTTGTCTTC-GCCGAA-ACGGTGAA--AAA-TCAACATCTCG-TCGG--CGCATCACT--------------GACACCC-CAAATGTTTC-GTTGG-ACACGGTGA
gi|11 : acaaATAAATCCACTTT-----GTCGCT--T-G-TTTAAGAAACCCTT--A--
gi|11 : gTTAATCAGACAATGGATCCCTTTTG----TTAAAATT--GGAAATGAACTCATCTCGTCCGCTGTTGAT-GCGGTGAA--AAA-TCAATACCCCAGTCGG--CGGATCACCAATTTTAAAGTTAAAACACCC-CGAATGatcagacaatggatcccttttgttaaaattggaaatgaactcatctcgtccgctgttgatgcggtgaaaaatcaataccccagtcggcggatcaccaattttaaagttaaaacaccccgaatgc
gi|12 : gataaatccactttgtcgcttgtttaagaaacccAAAA-C----TACAAGGCATGTATTTCCCTT-----ATCATT----G-TTTAAGAAACCCTT--A--T---GT-----C------T------TCCTTCCGTGCAATGATAGA------GTTGATCATCCAATGGATCTTTTTTG----TAAAAACT--GGAAATGAACTCATCTTGTCCGCc
gi|13 : aAGTTGAT-TAT--CAATAAA---AAAG---TCAGCCCGTGAGAATTAACTGGAAATCAACAACTCATACGCAACA-TCTACTTTTGAAGATTTTATT----------------------TATTCTGAACGTATTTCTAATCCCCAATGATAA
gi|14 : CTCGTCCA-TGCTGAACGTGGTGAATAAAA-TCAACACCCCGGTCCGATCGCATTA-T--------------AACACCCACCAATGTTCTGGTTGGAACACGGTGA
gi|15 : cacaattgtaTCCACTGCTGAA-GTGGTGAA--AAA-TCAACACCCCGGTCGA--CGCATTACT--------------AACACCC-CAAATGTTCT-GTTGG-ACACGGTGAgagt
gi|2 : GGTCACTTCCTATTTCTTTTTCTACATGCATGCATTGTAGATGATCTAAG--TAC--AAA-TTATTGAGCATTTAAAATACATTCTTGAAATAGAAGTGATA--T-ACATGTACCAAGAAACCCAGAGCCTTCACCCCACGATAA---ACAGGAAGTCAACATCTCCTATGCAACAATTCA-TTTTGAAGAT----------------------------------AAACGTATTTTTATTGCCAAATGATGAAGAATATGTGTTTTCGGAGCA--TCTTAGAAGTTTTGGACCATTAGTTGTTACCACACGCAAGCTTTTCAGT-GTAAGA---TT---------GGGTGATGTTGTGTTTTTTTAACCGACTTCTCAAATTGGGAGGAAGTGTTTG-CAAAA-C----TGCAAGGCATACGTCTACTTT-----ATCGTT--T-G-TTTAAGAAACAATT--A--TTATGT-----C------T------TCCTTCCGTGT----ATAGGAGCATCTTTAATCAGACAATG------------------AAAC--------TGAACTCATCCTGTCCGCTGCCGAG-GCGGTGAA--AAA-TCAACACCCCGGTCAG--CGCATCATC--------------AACATCC-
gi|3 : atttttgtatagaactaggatatatagtcggagcatgaacatgtgcttgtaaaGGTTTCTTC-TATTTCTTTGTCTACAT-C---CATCGAAGATTAGTTACG--T-ATAAAA-TAAT-GAACACTAAACTTACATTCTTAAAGTAGAAATGAGAGTTGATATTT--CTATATACCCAGAACCTTGACCCCATGAAGC---GCAGGAAATCAACACCCCGTACCCAACA-ACCCATTTTG-AGGTTTTGGC----------------------TTTACTGGGCGTATTTATAATGTCATATCATGAAGAAC--GTGTTTTCTGAACATCTTTC--AAGTTCTGGACAATTAGCTTTT--TTGATGTAAACTTTT----------A---TTA-GCAAACTGGGTAATGTT---TTCTTCGAGTCGGATTCTCAAATTGTCCGGCGGTATTTG-CAAAA-T----TTTGAGGCATTCGTTGACTTG-----GCTG-T--T-G-TGTATAACACCATTAAA--TTATGT-----C-------------TCCTTTCGTGCATTAATAGG------TTTAATCATCCAAAGGATCCTTTTTGTAAATAAAAAAT--GGAAATAAACTCCTCTTGTCTGCTGCCGAA-ACGGTGAA--AAA-TCAACTCCCCGA-CGG--TGCATCACT--------------AGTGCCC-CAAGTGTTTC-CTTGA-ACGCGGTGga
gi|4 : ttgtagtGGTCAATTC-TATTTAGCTGTCTACAT-C---TGTCGTAGATGAGCCAAA--TTC--AAA-T--------------GTTACATTCTTGAAGTAGAACCGATAGGTGATATGC--CAATAAAACT------------------GGC---AGAGGAAATCAACACCCCGTATGTAACA-TCCAATTTTGGAGGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACTGAAAGCATTTTCAATCCCAAATGATGAAAAAAATGCGTTT-CTAAAAA--ATTCAGAAGTTTTGGACCATTAGTTGTT--CGGATGCAAGCTTTTTATT-GTAAGA---T
gi|5 : agtGGATGATGTTTTGTTTTTTGAGCCAGATTCTCAAATTGGGCGGAGGTGTTAG-CAAAAAC----TAGGAGGCATACGTGTACTTT-----GTCGATGATAG-TTTTAGAAACCCTT--A--TTATGC-----CCTCGAAT------TCCTTCCTTGCAGTAATAGG------TTTAATCACTCAATGCATC---TTTG----TTAAAATTTTGGAAATGTAGTCACCTCGTCCGCTGCCGAA-ACTATAAA--AAA-TCAACACCCCGGTCGT--CGCATCACC--------------AACACTC-CGAATGTTCC-GTTGG-ACGCGGTGActcgacgcaaat
gi|6 : GTATTTG-CAAAA-CCGGCTGAAAGGCATACATTTACTTT-----GTCGTT--T-GGTTTTAGAAACCCTT--A--TTATACATGTAC------TGTATATTCCTTCCGTGTAGTAATAGA------TTTAATAAGACAATGGATCCTTTTTG----TAAAAATT--GGAAATGAACTCGCCTTGTCTGCTGCCGAA-GCGGTGAA--AAA-TCAACACCCCGGGCGG--AGCATCGCT--------------AA-ACCA-CAAATGTTCT-GTTGG-ACGCGGTGa
gi|7 : TTTG-CAAAA-T----TGTGAAGCATTTGTTAACTTT-----GCCATT----G-TGTAAAATACCATT--AAATTATGC-----C------T------TTCTTCCGTGCAGTAATAGG------TTTAATCATCCTATGGATCCTTTTTG----TAAAAAAT--GGAAATAAACACCTCTTGTCTGCTGCTGAA-GCTGTGAA--AAA-TCAACACGCCGGTCGG--TGCATCACT--------------AACAACC-CAAGTATTTC--TCAA-ACGCGGTGA
gi|8 : aCCTT--A--TTATGC-----C------T------TCCTACCGTGCAGTAATAGG------TTTAATCATCCATTGGATCATTTT-G----TAAAAAT---GGAAATAAACGCCTCTTGTCTGCTGCTGAA-GCGGTGAA--AAA-TCAACACCTCGGTCGG--CGCATCAGT--------------AATACCC-CAAGTGTTTC-TTTGG-ACTTGGTG
gi|9 : taaaaactttggATCCTT--A--TTATGC-----C------T------TCCTTCCGTGCAGTAAGGGA------TTTAATCACGCAATGCATC-TTTTTG----TTAAGATT--GGAAACGAACTCACTTCGACCGCTGCCGAA-GCGGTGAA--GAATTCAACACCCTGGTCGG--CGCATC-----------------AACACCA-TGAATGTTCC-GTTGG-ACGC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTTATGTCTATAGAACTGATATGGAGTATAATCGGAACACAAAATTGTGCATGGCA
Alignments
lowQualScore : 1 1 111 3333333 11111111111111111 11 1111 7777777777777777777777777 11 11 33333 111 22 111111 11111 1111 2222222222222222222 111111 11111111111111
lowQualScore : 0 1 0 777 2 4444444 77777777777777777 1 0 0 11 8 0 555 1 4444 1 8 5 3 3 4444444444444444444444444 4 1 1 33 3 33 3 0 33 0 44444 777 00 3 9 0 6 444444 1 11111 2 2222 4 55555 3333333333333333333 111111 22 5 7777 2 7777 3 44 3 44 99999999999999 3 1 4 4
lowQualScore : . . . ... . ....... ................. . . . .. . . ... . .... . . . . . ......................... . . . .. . .. . . .. . ..... ... .. . . . . ...... . ..... . .... . ..... ................... ...... .. . .... . .... . .. . .. .............. . . . .
lowQualScore : 0 0 0 555 0 8888888 00000000000000000 0 6 8 00 8 8 666 4 6666 4 0 6 8 8 4444444444444444444444444 0 0 0 55 2 88 2 2 88 2 88888 555 77 7 2 2 7 777777 7 11111 7 4444 4 55555 8888888888888888888 555555 00 1 7777 5 7777 3 66 3 66 66666666666666 3 0 0 0
consensus : GGTCACTTC-TATTTCNCTGTCTACAT-C---CGTCGTAGATGAGCCAAG--T-C--AAA-TAAT-GAACATTAAAGTTACATTCTTGAAGTAGAANCGATAGTTGATATGT--CAATAAANCCAGAGCCTTCACCCCGTGAGGA---ACAGGAAATCAACACCCCGTACGCAACA-TCCAATTTTGAAGATTTTGTC----------------------TTTACTGAACGTATTTTTAATNCCAAATGATGAAGAACATGTGTTTTCTGAACA--TTTCAGAAGTTTTGGACCATTAGTTGTT--CGGATGCAAGCTTTTNA-T-GTAAGA---TTA-GCAAACTGGGTGATGTTTTGTTTTTTGAGCCGGATTCTCAAATTGGGCGGAGGTGTTTG-CAAAA-C----TGCGAGGCATACGTCTACTTT-----GTCGTT--T-G-TTTAAGAAACCCTT--A--TTATGC-----C------T------TCCTTCCGTGCAGTAATAGG------TTTAATCANNCAATGGATCCTTTTTG----TAAAAATT--GGAAATGAACTCATCTCGTCCGCTGCCGAA-GCGGTGAA--AAA-TCAACACCCCGGTCGG--CGCATCACT--------------AACACCC-CGAATGTTCC-GTTGG-ACGCGGTGA
Reference ( family-4468 ) : GGTCACTTC-TATTTCNCTGTCTACAT-C---CGTCGTAGATGAGCCAAG--T-C--AAA-TAAT-GAACATTAAAGTTACATTCTTGAAGTAGAANCGATAGTTGATATGT--CAATAAANCCAGAGCCTTCACCCCGTGAGGA---ACAGGAAATCAACACCCCGTACGCAACA-TCCAATTTTGAAGATTTTGTC----------------------TTTACTGAACGTATTTTTAATNCCAAATGATGAAGAACATGTGTTTTCTGAACA--TTTCAGAAGTTTTGGACCATTAGTTGTT--CGGATGCAAGCTTTTNA-T-GTAAGA---TTA-GCAAACTGGGTGATGTTTTGTTTTTTGAGCCGGATTCTCAAATTGGGCGGAGGTGTTTG-CAAAA-C----TGCGAGGCATACGTCTACTTT-----GTCGTT--T-G-TTTAAGAAACCCTT--A--TTATGC-----C------T------TCCTTCCGTGCAGTAATAGG------TTTAATCANNCAATGGATCCTTTTTG----TAAAAATT--GGAAATGAACTCATCTCGTCCGCTGCCGAA-GCGGTGAA--AAA-TCAACACCCCGGTCGG--CGCATCACT--------------AACACCC-CGAATGTTCC-GTTGG-ACGCGGTGA
gi|1 : GGTCACTTC-TATTTCGCTGTCTGCAT-C---CATCTTGGATGAGCCAAAATT-C--AAAATAAT-GAACTTTATTGTTACATTCTTGAAGTAGAACCGATAGTTGATATGT--CAATAAAACCAGAGCCTTCACCCTGTGAGGA---ACAGGAAATCATCACCGCGTACGCAATA-TCCAATTTTGAAGATCTTGTC----------------------TCTACTGAATGTATTTTCAACATCAAATGATGAAGAACATGTGTTTTCTAAACA--TTTCAGAAGTTTTGGACCATTGGTTATT--TGGATGTAAGCTTTTGA-TCGTAAGATATTTACGCAAATTGGGTAATGTTTTGTTTTCTGAGGCGGATTCTCAAATTGGGCGAAGGTGTTAGCCAAAA-T----GGCAAAGTATACACCTGCTTT-----ATCGCT--T-G-TTTAAGAAACCCTC--A--TTATCC-----C------T------TCCTTTTGTGCAGTAATACA------TTTAATCAGACAATGGATCCTTTTTG----TAAACATT--GCAAATAAAATCAAATCGTCCGCTGCCGAA-GCGGAAAA--AAA-TCA--TCTCCGGTCGG--CGCATCACC--------------AACACCC-TGAATGCTAG-GTTGG-ACGCGGTGA
gi|10 : CTACTTTCAATTGTCGTT--T-G-TTTAGGAAACCCTT-----------------------------------CCGTGTAGTAATAGA------TTCAATACAACAATGGATCCTTTTC------------------------CTTATCTTGTCTTC-GCCGAA-ACGGTGAA--AAA-TCAACATCTCG-TCGG--CGCATCACT--------------GACACCC-CAAATGTTTC-GTTGG-ACACGGTGA
gi|11 : acaaATAAATCCACTTT-----GTCGCT--T-G-TTTAAGAAACCCTT--A--
gi|11 : gTTAATCAGACAATGGATCCCTTTTG----TTAAAATT--GGAAATGAACTCATCTCGTCCGCTGTTGAT-GCGGTGAA--AAA-TCAATACCCCAGTCGG--CGGATCACCAATTTTAAAGTTAAAACACCC-CGAATGatcagacaatggatcccttttgttaaaattggaaatgaactcatctcgtccgctgttgatgcggtgaaaaatcaataccccagtcggcggatcaccaattttaaagttaaaacaccccgaatgc
gi|12 : gataaatccactttgtcgcttgtttaagaaacccAAAA-C----TACAAGGCATGTATTTCCCTT-----ATCATT----G-TTTAAGAAACCCTT--A--T---GT-----C------T------TCCTTCCGTGCAATGATAGA------GTTGATCATCCAATGGATCTTTTTTG----TAAAAACT--GGAAATGAACTCATCTTGTCCGCc
gi|13 : aAGTTGAT-TAT--CAATAAA---AAAG---TCAGCCCGTGAGAATTAACTGGAAATCAACAACTCATACGCAACA-TCTACTTTTGAAGATTTTATT----------------------TATTCTGAACGTATTTCTAATCCCCAATGATAA
gi|14 : CTCGTCCA-TGCTGAACGTGGTGAATAAAA-TCAACACCCCGGTCCGATCGCATTA-T--------------AACACCCACCAATGTTCTGGTTGGAACACGGTGA
gi|15 : cacaattgtaTCCACTGCTGAA-GTGGTGAA--AAA-TCAACACCCCGGTCGA--CGCATTACT--------------AACACCC-CAAATGTTCT-GTTGG-ACACGGTGAgagt
gi|2 : GGTCACTTCCTATTTCTTTTTCTACATGCATGCATTGTAGATGATCTAAG--TAC--AAA-TTATTGAGCATTTAAAATACATTCTTGAAATAGAAGTGATA--T-ACATGTACCAAGAAACCCAGAGCCTTCACCCCACGATAA---ACAGGAAGTCAACATCTCCTATGCAACAATTCA-TTTTGAAGAT----------------------------------AAACGTATTTTTATTGCCAAATGATGAAGAATATGTGTTTTCGGAGCA--TCTTAGAAGTTTTGGACCATTAGTTGTTACCACACGCAAGCTTTTCAGT-GTAAGA---TT---------GGGTGATGTTGTGTTTTTTTAACCGACTTCTCAAATTGGGAGGAAGTGTTTG-CAAAA-C----TGCAAGGCATACGTCTACTTT-----ATCGTT--T-G-TTTAAGAAACAATT--A--TTATGT-----C------T------TCCTTCCGTGT----ATAGGAGCATCTTTAATCAGACAATG------------------AAAC--------TGAACTCATCCTGTCCGCTGCCGAG-GCGGTGAA--AAA-TCAACACCCCGGTCAG--CGCATCATC--------------AACATCC-
gi|3 : atttttgtatagaactaggatatatagtcggagcatgaacatgtgcttgtaaaGGTTTCTTC-TATTTCTTTGTCTACAT-C---CATCGAAGATTAGTTACG--T-ATAAAA-TAAT-GAACACTAAACTTACATTCTTAAAGTAGAAATGAGAGTTGATATTT--CTATATACCCAGAACCTTGACCCCATGAAGC---GCAGGAAATCAACACCCCGTACCCAACA-ACCCATTTTG-AGGTTTTGGC----------------------TTTACTGGGCGTATTTATAATGTCATATCATGAAGAAC--GTGTTTTCTGAACATCTTTC--AAGTTCTGGACAATTAGCTTTT--TTGATGTAAACTTTT----------A---TTA-GCAAACTGGGTAATGTT---TTCTTCGAGTCGGATTCTCAAATTGTCCGGCGGTATTTG-CAAAA-T----TTTGAGGCATTCGTTGACTTG-----GCTG-T--T-G-TGTATAACACCATTAAA--TTATGT-----C-------------TCCTTTCGTGCATTAATAGG------TTTAATCATCCAAAGGATCCTTTTTGTAAATAAAAAAT--GGAAATAAACTCCTCTTGTCTGCTGCCGAA-ACGGTGAA--AAA-TCAACTCCCCGA-CGG--TGCATCACT--------------AGTGCCC-CAAGTGTTTC-CTTGA-ACGCGGTGga
gi|4 : ttgtagtGGTCAATTC-TATTTAGCTGTCTACAT-C---TGTCGTAGATGAGCCAAA--TTC--AAA-T--------------GTTACATTCTTGAAGTAGAACCGATAGGTGATATGC--CAATAAAACT------------------GGC---AGAGGAAATCAACACCCCGTATGTAACA-TCCAATTTTGGAGGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACTGAAAGCATTTTCAATCCCAAATGATGAAAAAAATGCGTTT-CTAAAAA--ATTCAGAAGTTTTGGACCATTAGTTGTT--CGGATGCAAGCTTTTTATT-GTAAGA---T
gi|5 : agtGGATGATGTTTTGTTTTTTGAGCCAGATTCTCAAATTGGGCGGAGGTGTTAG-CAAAAAC----TAGGAGGCATACGTGTACTTT-----GTCGATGATAG-TTTTAGAAACCCTT--A--TTATGC-----CCTCGAAT------TCCTTCCTTGCAGTAATAGG------TTTAATCACTCAATGCATC---TTTG----TTAAAATTTTGGAAATGTAGTCACCTCGTCCGCTGCCGAA-ACTATAAA--AAA-TCAACACCCCGGTCGT--CGCATCACC--------------AACACTC-CGAATGTTCC-GTTGG-ACGCGGTGActcgacgcaaat
gi|6 : GTATTTG-CAAAA-CCGGCTGAAAGGCATACATTTACTTT-----GTCGTT--T-GGTTTTAGAAACCCTT--A--TTATACATGTAC------TGTATATTCCTTCCGTGTAGTAATAGA------TTTAATAAGACAATGGATCCTTTTTG----TAAAAATT--GGAAATGAACTCGCCTTGTCTGCTGCCGAA-GCGGTGAA--AAA-TCAACACCCCGGGCGG--AGCATCGCT--------------AA-ACCA-CAAATGTTCT-GTTGG-ACGCGGTGa
gi|7 : TTTG-CAAAA-T----TGTGAAGCATTTGTTAACTTT-----GCCATT----G-TGTAAAATACCATT--AAATTATGC-----C------T------TTCTTCCGTGCAGTAATAGG------TTTAATCATCCTATGGATCCTTTTTG----TAAAAAAT--GGAAATAAACACCTCTTGTCTGCTGCTGAA-GCTGTGAA--AAA-TCAACACGCCGGTCGG--TGCATCACT--------------AACAACC-CAAGTATTTC--TCAA-ACGCGGTGA
gi|8 : aCCTT--A--TTATGC-----C------T------TCCTACCGTGCAGTAATAGG------TTTAATCATCCATTGGATCATTTT-G----TAAAAAT---GGAAATAAACGCCTCTTGTCTGCTGCTGAA-GCGGTGAA--AAA-TCAACACCTCGGTCGG--CGCATCAGT--------------AATACCC-CAAGTGTTTC-TTTGG-ACTTGGTG
gi|9 : taaaaactttggATCCTT--A--TTATGC-----C------T------TCCTTCCGTGCAGTAAGGGA------TTTAATCACGCAATGCATC-TTTTTG----TTAAGATT--GGAAACGAACTCACTTCGACCGCTGCCGAA-GCGGTGAA--GAATTCAACACCCTGGTCGG--CGCATC-----------------AACACCA-TGAATGTTCC-GTTGG-ACGC
blockSeqs : C T G ATG A TATA TTATTGAGCATTTAAA G AC C CCT G ATTA T A C A T NNNNNNNNNNNNNNNNNNNNNNNNN A T C TA T TC A AC CAGT . A C G . CCGGC C CAATT T GATA G AAA ATGTACTGTATAT AGCATC AA C TAAA T TTTT C TA T AT AATTTTAAAGTTAA A A G A
blockSeqs : . T . . A TAC TAATGAACACTAAAC A . C CCT A A T . A A T ATT T A G AA T . A . TATT . . . T . AC C . C T . AAA CCTCGAAT . GA C . A TT . . . . . . G . .
blockSeqs : . G . . G TTC TG C . A . A C C . A G T GGC T A G C . . . . . . . . C T . T T . A CT . TC T . A CT . . . . . . C . .
blockSeqs : . . . . C C . . . . . . . C . C G . T T . A CT . GA C . T AT . . . . . . A . .
blockSeqs : . T A . A T . A CT . TC C . A TT . . . . . . A . .
blockSeqs : T T . T T . A CT . CT C . A AT . . . . . . G . .
blockSeqs : . T . . A CT . GA A . A TT . . . . . . A . .
blockSeqs : . . . . A C . TC . . T C . . . . . . A . .
blockSeqs : A . . TC . . . T . . . . . . A . .
blockSeqs : . CG . . . . . . . . . . G
blockSeqs : . . . . . .
blockSeqCons :
originalCons : GGTCACTTC-TATTTCNCTGTCTACAT-C---CGTCGTAGATGAGCCAAG--T-C--AAA-TAAT-GAACATTAAAGTTACATTCTTGAAGTAGAANCGATAGTTGATATGT--CAATAAANCCAGAGCCTTCACCCCGTGAGGA---ACAGGAAATCAACACCCCGTACGCAACA-TCCAATTTTGAAGATTTTGTC----------------------TTTACTGAACGTATTTTTAATNCCAAATGATGAAGAACATGTGTTTTCTGAACA--TTTCAGAAGTTTTGGACCATTAGTTGTT--CGGATGCAAGCTTTTNA-T-GTAAGA---TTA-GCAAACTGGGTGATGTTTTGTTTTTTGAGCCGGATTCTCAAATTGGGCGGAGGTGTTTG-CAAAA-C----TGCGAGGCATACGTCTACTTT-----GTCGTT--T-G-TTTAAGAAACCCTT--A--TTATGC-----C------T------TCCTTCCGTGCAGTAATAGG------TTTAATCANNCAATGGATCCTTTTTG----TAAAAATT--GGAAATGAACTCATCTCGTCCGCTGCCGAA-GCGGTGAA--AAA-TCAACACCCCGGTCGG--CGCATCACT--------------AACACCC-CGAATGTTCC-GTTGG-ACGCGGTGA
finalCons : GGTCACTTC-TATTTCNCTGTCTACAT-C---CGTCGTAGATGAGCCAAG--T-C--AAA-TAAT-GAACATTAAAGTTACATTCTTGAAGTAGAANCGATAGTTGATATGT--CAATAAANCCAGAGCCTTCACCCCGTGAGGA---ACAGGAAATCAACACCCCGTACGCAACA-TCCAATTTTGAAGATTTTGTC----------------------TTTACTGAACGTATTTTTAATNCCAAATGATGAAGAACATGTGTTTTCTGAACA--TTTCAGAAGTTTTGGACCATTAGTTGTT--CGGATGCAAGCTTTTNA-T-GTAAGA---TTA-GCAAACTGGGTGATGTTTTGTTTTTTGAGCCGGATTCTCAAATTGGGCGGAGGTGTTTG-CAAAA-C----TGCGAGGCATACGTCTACTTT-----GTCGTT--T-G-TTTAAGAAACCCTT--A--TTATGC-----C------T------TCCTTCCGTGCAGTAATAGG------TTTAATCANNCAATGGATCCTTTTTG----TAAAAATT--GGAAATGAACTCATCTCGTCCGCTGCCGAA-GCGGTGAA--AAA-TCAACACCCCGGTCGG--CGCATCACT--------------AACACCC-CGAATGTTCC-GTTGG-ACGCGGTGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTTATGTCTATAGAACTGATATGGAGTATAATCGGAACACAAAATTGTGCATGGCA
Alignments
lowQualScore : 1 1 111 3333333 11111111111111111 11 1111 7777777777777777777777777 11 11 33333 111 22 111111 11111 1111 2222222222222222222 111111 11111111111111
lowQualScore : 0 1 0 777 2 4444444 77777777777777777 1 0 0 11 8 0 555 1 4444 1 8 5 3 3 4444444444444444444444444 4 1 1 33 3 33 3 0 33 0 44444 777 00 3 9 0 6 444444 1 11111 2 2222 4 55555 3333333333333333333 111111 22 5 7777 2 7777 3 44 3 44 99999999999999 3 1 4 4
lowQualScore : . . . ... . ....... ................. . . . .. . . ... . .... . . . . . ......................... . . . .. . .. . . .. . ..... ... .. . . . . ...... . ..... . .... . ..... ................... ...... .. . .... . .... . .. . .. .............. . . . .
lowQualScore : 0 0 0 555 0 8888888 00000000000000000 0 6 8 00 8 8 666 4 6666 4 0 6 8 8 4444444444444444444444444 0 0 0 55 2 88 2 2 88 2 88888 555 77 7 2 2 7 777777 7 11111 7 4444 4 55555 8888888888888888888 555555 00 1 7777 5 7777 3 66 3 66 66666666666666 3 0 0 0
consensus : GGTCACTTC-TATTTCNCTGTCTACAT-C---CGTCGTAGATGAGCCAAG--T-C--AAA-TAAT-GAACATTAAAGTTACATTCTTGAAGTAGAANCGATAGTTGATATGT--CAATAAANCCAGAGCCTTCACCCCGTGAGGA---ACAGGAAATCAACACCCCGTACGCAACA-TCCAATTTTGAAGATTTTGTC----------------------TTTACTGAACGTATTTTTAATNCCAAATGATGAAGAACATGTGTTTTCTGAACA--TTTCAGAAGTTTTGGACCATTAGTTGTT--CGGATGCAAGCTTTTNA-T-GTAAGA---TTA-GCAAACTGGGTGATGTTTTGTTTTTTGAGCCGGATTCTCAAATTGGGCGGAGGTGTTTG-CAAAA-C----TGCGAGGCATACGTCTACTTT-----GTCGTT--T-G-TTTAAGAAACCCTT--A--TTATGC-----C------T------TCCTTCCGTGCAGTAATAGG------TTTAATCANNCAATGGATCCTTTTTG----TAAAAATT--GGAAATGAACTCATCTCGTCCGCTGCCGAA-GCGGTGAA--AAA-TCAACACCCCGGTCGG--CGCATCACT--------------AACACCC-CGAATGTTCC-GTTGG-ACGCGGTGA
Reference ( family-4468 ) : GGTCACTTC-TATTTCNCTGTCTACAT-C---CGTCGTAGATGAGCCAAG--T-C--AAA-TAAT-GAACATTAAAGTTACATTCTTGAAGTAGAANCGATAGTTGATATGT--CAATAAANCCAGAGCCTTCACCCCGTGAGGA---ACAGGAAATCAACACCCCGTACGCAACA-TCCAATTTTGAAGATTTTGTC----------------------TTTACTGAACGTATTTTTAATNCCAAATGATGAAGAACATGTGTTTTCTGAACA--TTTCAGAAGTTTTGGACCATTAGTTGTT--CGGATGCAAGCTTTTNA-T-GTAAGA---TTA-GCAAACTGGGTGATGTTTTGTTTTTTGAGCCGGATTCTCAAATTGGGCGGAGGTGTTTG-CAAAA-C----TGCGAGGCATACGTCTACTTT-----GTCGTT--T-G-TTTAAGAAACCCTT--A--TTATGC-----C------T------TCCTTCCGTGCAGTAATAGG------TTTAATCANNCAATGGATCCTTTTTG----TAAAAATT--GGAAATGAACTCATCTCGTCCGCTGCCGAA-GCGGTGAA--AAA-TCAACACCCCGGTCGG--CGCATCACT--------------AACACCC-CGAATGTTCC-GTTGG-ACGCGGTGA
gi|1 : GGTCACTTC-TATTTCGCTGTCTGCAT-C---CATCTTGGATGAGCCAAAATT-C--AAAATAAT-GAACTTTATTGTTACATTCTTGAAGTAGAACCGATAGTTGATATGT--CAATAAAACCAGAGCCTTCACCCTGTGAGGA---ACAGGAAATCATCACCGCGTACGCAATA-TCCAATTTTGAAGATCTTGTC----------------------TCTACTGAATGTATTTTCAACATCAAATGATGAAGAACATGTGTTTTCTAAACA--TTTCAGAAGTTTTGGACCATTGGTTATT--TGGATGTAAGCTTTTGA-TCGTAAGATATTTACGCAAATTGGGTAATGTTTTGTTTTCTGAGGCGGATTCTCAAATTGGGCGAAGGTGTTAGCCAAAA-T----GGCAAAGTATACACCTGCTTT-----ATCGCT--T-G-TTTAAGAAACCCTC--A--TTATCC-----C------T------TCCTTTTGTGCAGTAATACA------TTTAATCAGACAATGGATCCTTTTTG----TAAACATT--GCAAATAAAATCAAATCGTCCGCTGCCGAA-GCGGAAAA--AAA-TCA--TCTCCGGTCGG--CGCATCACC--------------AACACCC-TGAATGCTAG-GTTGG-ACGCGGTGA
gi|10 : CTACTTTCAATTGTCGTT--T-G-TTTAGGAAACCCTT-----------------------------------CCGTGTAGTAATAGA------TTCAATACAACAATGGATCCTTTTC------------------------CTTATCTTGTCTTC-GCCGAA-ACGGTGAA--AAA-TCAACATCTCG-TCGG--CGCATCACT--------------GACACCC-CAAATGTTTC-GTTGG-ACACGGTGA
gi|11 : acaaATAAATCCACTTT-----GTCGCT--T-G-TTTAAGAAACCCTT--A--
gi|11 : gTTAATCAGACAATGGATCCCTTTTG----TTAAAATT--GGAAATGAACTCATCTCGTCCGCTGTTGAT-GCGGTGAA--AAA-TCAATACCCCAGTCGG--CGGATCACCAATTTTAAAGTTAAAACACCC-CGAATGatcagacaatggatcccttttgttaaaattggaaatgaactcatctcgtccgctgttgatgcggtgaaaaatcaataccccagtcggcggatcaccaattttaaagttaaaacaccccgaatgc
gi|12 : gataaatccactttgtcgcttgtttaagaaacccAAAA-C----TACAAGGCATGTATTTCCCTT-----ATCATT----G-TTTAAGAAACCCTT--A--T---GT-----C------T------TCCTTCCGTGCAATGATAGA------GTTGATCATCCAATGGATCTTTTTTG----TAAAAACT--GGAAATGAACTCATCTTGTCCGCc
gi|13 : aAGTTGAT-TAT--CAATAAA---AAAG---TCAGCCCGTGAGAATTAACTGGAAATCAACAACTCATACGCAACA-TCTACTTTTGAAGATTTTATT----------------------TATTCTGAACGTATTTCTAATCCCCAATGATAA
gi|14 : CTCGTCCA-TGCTGAACGTGGTGAATAAAA-TCAACACCCCGGTCCGATCGCATTA-T--------------AACACCCACCAATGTTCTGGTTGGAACACGGTGA
gi|15 : cacaattgtaTCCACTGCTGAA-GTGGTGAA--AAA-TCAACACCCCGGTCGA--CGCATTACT--------------AACACCC-CAAATGTTCT-GTTGG-ACACGGTGAgagt
gi|2 : GGTCACTTCCTATTTCTTTTTCTACATGCATGCATTGTAGATGATCTAAG--TAC--AAA-TTATTGAGCATTTAAAATACATTCTTGAAATAGAAGTGATA--T-ACATGTACCAAGAAACCCAGAGCCTTCACCCCACGATAA---ACAGGAAGTCAACATCTCCTATGCAACAATTCA-TTTTGAAGAT----------------------------------AAACGTATTTTTATTGCCAAATGATGAAGAATATGTGTTTTCGGAGCA--TCTTAGAAGTTTTGGACCATTAGTTGTTACCACACGCAAGCTTTTCAGT-GTAAGA---TT---------GGGTGATGTTGTGTTTTTTTAACCGACTTCTCAAATTGGGAGGAAGTGTTTG-CAAAA-C----TGCAAGGCATACGTCTACTTT-----ATCGTT--T-G-TTTAAGAAACAATT--A--TTATGT-----C------T------TCCTTCCGTGT----ATAGGAGCATCTTTAATCAGACAATG------------------AAAC--------TGAACTCATCCTGTCCGCTGCCGAG-GCGGTGAA--AAA-TCAACACCCCGGTCAG--CGCATCATC--------------AACATCC-
gi|3 : atttttgtatagaactaggatatatagtcggagcatgaacatgtgcttgtaaaGGTTTCTTC-TATTTCTTTGTCTACAT-C---CATCGAAGATTAGTTACG--T-ATAAAA-TAAT-GAACACTAAACTTACATTCTTAAAGTAGAAATGAGAGTTGATATTT--CTATATACCCAGAACCTTGACCCCATGAAGC---GCAGGAAATCAACACCCCGTACCCAACA-ACCCATTTTG-AGGTTTTGGC----------------------TTTACTGGGCGTATTTATAATGTCATATCATGAAGAAC--GTGTTTTCTGAACATCTTTC--AAGTTCTGGACAATTAGCTTTT--TTGATGTAAACTTTT----------A---TTA-GCAAACTGGGTAATGTT---TTCTTCGAGTCGGATTCTCAAATTGTCCGGCGGTATTTG-CAAAA-T----TTTGAGGCATTCGTTGACTTG-----GCTG-T--T-G-TGTATAACACCATTAAA--TTATGT-----C-------------TCCTTTCGTGCATTAATAGG------TTTAATCATCCAAAGGATCCTTTTTGTAAATAAAAAAT--GGAAATAAACTCCTCTTGTCTGCTGCCGAA-ACGGTGAA--AAA-TCAACTCCCCGA-CGG--TGCATCACT--------------AGTGCCC-CAAGTGTTTC-CTTGA-ACGCGGTGga
gi|4 : ttgtagtGGTCAATTC-TATTTAGCTGTCTACAT-C---TGTCGTAGATGAGCCAAA--TTC--AAA-T--------------GTTACATTCTTGAAGTAGAACCGATAGGTGATATGC--CAATAAAACT------------------GGC---AGAGGAAATCAACACCCCGTATGTAACA-TCCAATTTTGGAGGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACTGAAAGCATTTTCAATCCCAAATGATGAAAAAAATGCGTTT-CTAAAAA--ATTCAGAAGTTTTGGACCATTAGTTGTT--CGGATGCAAGCTTTTTATT-GTAAGA---T
gi|5 : agtGGATGATGTTTTGTTTTTTGAGCCAGATTCTCAAATTGGGCGGAGGTGTTAG-CAAAAAC----TAGGAGGCATACGTGTACTTT-----GTCGATGATAG-TTTTAGAAACCCTT--A--TTATGC-----CCTCGAAT------TCCTTCCTTGCAGTAATAGG------TTTAATCACTCAATGCATC---TTTG----TTAAAATTTTGGAAATGTAGTCACCTCGTCCGCTGCCGAA-ACTATAAA--AAA-TCAACACCCCGGTCGT--CGCATCACC--------------AACACTC-CGAATGTTCC-GTTGG-ACGCGGTGActcgacgcaaat
gi|6 : GTATTTG-CAAAA-CCGGCTGAAAGGCATACATTTACTTT-----GTCGTT--T-GGTTTTAGAAACCCTT--A--TTATACATGTAC------TGTATATTCCTTCCGTGTAGTAATAGA------TTTAATAAGACAATGGATCCTTTTTG----TAAAAATT--GGAAATGAACTCGCCTTGTCTGCTGCCGAA-GCGGTGAA--AAA-TCAACACCCCGGGCGG--AGCATCGCT--------------AA-ACCA-CAAATGTTCT-GTTGG-ACGCGGTGa
gi|7 : TTTG-CAAAA-T----TGTGAAGCATTTGTTAACTTT-----GCCATT----G-TGTAAAATACCATT--AAATTATGC-----C------T------TTCTTCCGTGCAGTAATAGG------TTTAATCATCCTATGGATCCTTTTTG----TAAAAAAT--GGAAATAAACACCTCTTGTCTGCTGCTGAA-GCTGTGAA--AAA-TCAACACGCCGGTCGG--TGCATCACT--------------AACAACC-CAAGTATTTC--TCAA-ACGCGGTGA
gi|8 : aCCTT--A--TTATGC-----C------T------TCCTACCGTGCAGTAATAGG------TTTAATCATCCATTGGATCATTTT-G----TAAAAAT---GGAAATAAACGCCTCTTGTCTGCTGCTGAA-GCGGTGAA--AAA-TCAACACCTCGGTCGG--CGCATCAGT--------------AATACCC-CAAGTGTTTC-TTTGG-ACTTGGTG
gi|9 : taaaaactttggATCCTT--A--TTATGC-----C------T------TCCTTCCGTGCAGTAAGGGA------TTTAATCACGCAATGCATC-TTTTTG----TTAAGATT--GGAAACGAACTCACTTCGACCGCTGCCGAA-GCGGTGAA--GAATTCAACACCCTGGTCGG--CGCATC-----------------AACACCA-TGAATGTTCC-GTTGG-ACGC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTTATGTCTATAGAACTGATATGGAGTATAATCGGAACACAAAATTGTGCATGGCA