lowQualScore : 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888
lowQualScore : 2222222 33 11111111 22222 111 1111 222222222222 22 2 55555555555555 3 111 2 222 111 11 1 1 222 2222222 22 77777777777777 333 222 22222 11 11111 1 6666666666666666 444444 1 1 1 1 111 1 1111 1 1 22 1 44 8888 44 11 6666 55 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 4
lowQualScore : 6 6 1 1 9 1111111 33 6 77777777 44444 66 000 2222 1 5 111111111111 88 66 1 4 0 9 1 5 0 33333333333333 5 5 3 1 0 000 6 5 2 0 4 99 333 6 777 11 3 5 555 2 4 6666666 3 88 22 88888888888888 000 1 222 6 55555 11 8 99999 0 8888888888888888 222222 0 0 5 9 3 6 66 3 2 444 7 6 8888 3 7 6 3 66 5 2 66 5555 66 22 6 2222 55 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 6
lowQualScore : . . . . . ....... .. . ........ ..... .. ... .... . . ............ .. .. . . . . . . . .............. . . . . . ... . . . . . .. ... . ... .. . . ... . . ....... . .. .. .............. ... . ... . ..... .. . ..... . ................ ...... . . . . . . .. . . ... . . .... . . . . .. . . .. .... .. .. . .... .. ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... . .
lowQualScore : 7 7 1 7 3 0000000 99 5 44444444 88888 99 000 1111 3 0 666666666666 44 99 9 1 9 0 4 7 0 11111111111111 7 7 0 4 1 000 6 2 5 3 2 22 222 7 222 88 3 0 000 2 0 8888888 2 00 22 88888888888888 888 4 222 6 00000 22 0 44444 0 5555555555555555 000000 0 0 0 2 2 2 00 2 0 333 3 0 3333 3 7 7 3 00 5 5 00 0000 00 00 0 0000 00 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 0
consensus : TGT-TTG-GGTTGGAAGACAATATAGAGACAAA-ATT--TGAGCGA-TTTACCC------G-AT---T-ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGA-G----G--G--G-ATG-CAC-TACNGACATCGCAGATCCACTGTTTG-CCGCATTCCA-------------GCGAC-G-TGAT-AAATCTA---ACGCGGTATTCTCGAGGAANTATCCGTGTTTTCGTTTT--AT--TTA-TTT-TATTTGA-NTATTT-CAGTTTGCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAT--CTGANTGTAT-TGAAGATGATTNNTTTTCAAAGTAAG-CATA-ATC-TTGAAA-AGGGGGC-GGGGTAAAA--AG-GCATCN-CGAATTACA-CCANGAA-TTTCGTGGTATGT-AGGG-TAATG--TACCGT-ATATCAATCA-AAGTA-GGGAAAGGGTATATTTTNAAAACACGTAAA-T-ATTTATGT-TTTCCCG-GC-GANGTAAACA-CAACAGTATTCTTNTTTAAG-GGAGAGAAA----TGTGTG-TCATCTTTTGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTT---AACTCGGGTT-ACA-TTACGAACTTC-----AAT---TACTTCATATTTTTTTTTTTTTTTTGNAGACAAA-TCG-GGTCNAAGTCCGCGGACAAAGAAACACTTTACAAANNGAGCATCTATTATTAGATTAATAATTAAAATGACAAAATGAATGTAGTTACAACAANTNTTNTTNTTTTTGGGGGGGGGGGTTTG----TTTTGGGGGGGGGGGCGGGTGAAANTGTTGTTTGTTTGNGATTTTNNTTTTTTTTNTGTTTATGTGGATATATATATATATATG-AAG----ACGAATCGGTT---------AATAT--A---TA-A-NT------GA-AG-CT---NAAT--TTTTGC--TTTGAATTTANCGATA-TCTTA-CG-TATTTC-TANAATGTTTGCATG-CTTTCA--AAACACATAA--AAAAAATAAACA--AGAATGTGTTT-CA-GCCTT-----TT--------------A-TTCTAAA-TGAT-----AGGAGGGGG------GGG---GTCTCC-AGTCTAGCCAAGT-GAGACGATTCTCCGTAAAA---CCTGTGTATTT---C-AAACTCGG---ATATTTCAA--------AACTCGGACGCAT-GGGAAGACA
Reference ( gi|1 ) : TGT-TTG-GGTTGAAAGATAATAAAGAGACAAA-ATT--TGAGCGACTTTATCC------A-AT---T-ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGA-G----G--G--A-ATG-CACTTACTGATATCGAAGATCCACTGTTTG-CCGCTTTCCAG------------GCGAC-G-TGATAAAATCTA---ACGCGGTATTCTCGAGGAAGTATTCGTGTTTTCGTTTT--AT--CTA-TTC-AATTTGA-GTATTT-CAGTTTGCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAT--CTAATTGTAT-TAACGATGATTTTTTTTTAAAG-AAGCCATA-CTGATTGAAAAAGGGGG--GGGGTTAAA--AC-GCATCC-CGAATTACA-CCACG-A-TTTCGTGGTATGT-AGGG-TAATGGTTA--GT-ATATCAAAGA-ACGTA-GGGTAACGATATATATCTAAAGCATGTAAA-T-ATTTATGTATTTCTCG-GC-GATGTAACCA-CAACAATATTCTTCTTTAAAAGGAGAGAAAATGTTGTGTACTCATTCTTCGCGTTG-TT-TAATAAGATGCTTGC--GAAAATATGTATTTTTAAAACT-GGGTTCACAATTACGCAATTCTTGAAAATCTCTACTTC-TATTTTTTTTTTTTT----TAGACAAAGTCGCAGTCTAAGTC------------------------ATCGAGCATTT-TAATTAGAT-----AT-AAACTGACAAAATAAATGTAGCT-------GTTTTGTTGTTTT---------GGGTTTATTTTTTTTGGGGGGG-------------TTGTTGTGTGTTT-C--TTTTCATTTATTTTTTATTGATATAATTATATATATATATATATAAGA---ATGAATCAG-----------AATAT--A---TA-A-AT------GA-AG-CT---CGAT--TTTTGC--TTTGAATTTATCAATG-TCTT--CG-TATTTC-TAAAATGTTTGCATG-CTTTAA--AAACACATAA--GAAAAATAAACA--AGAATTTGTTT-CA-GCCTT-----TTAAAAAAA------AAATTTTAAA-TGATTAGCGAGGAGGGGG------GGG---GTCTTC-A-TCTAGC--AGTAGAGACAACCTTTCGTAAAAATCTTTGTTTATTCAAACAAAACTCAGCCAATATTTCAAGATTAAAGAACTCGGACGCATAGAGAAGACA
gi|17 : TGTCTTG-GCTTGGAAGACATTACAGAGACAAA-A-C--TGAGCGA-TTTACCT------G-AT---TGATAT--AATA
gi|2 : acT-TTG-GGTTGAAAGATAAGAAAGAGACAAA-ATT--TGGGCGAC-TTATTC------A-AT---TCATGT--AATCGT---TGCAACAG----CAGAAAAGAGATATATTGA-G----G--GT-A-ATG--AC-TAGGGGTATCGAAGATTCACTGTTTG-CCGCGTTCC--------------GCGAC-GTTGAT--AATCTA---ACGCGGTATTT---GGGAAGTATTCG-GTTTGTGTTTA--TT--CTA-TTG-AATT--G-GTATTTCCAGTTT-CTTGcattgtagtt
gi|10 : actgtT-TTG-GGTTGAAAGATAATAAAGAGACAAACAT-----AGCGA-TTTA-CC------A-AT---T-ATAT--A--AGT---TGCAAC-G----CA-AAAAGAGATATATTGA-G----G--GGAG-ATG-CAC-TACTGACATCGAAGATCCACTGTTAG-CCGC-ATCCA-------------GCGACTG-TGAT-AAATCTA---ACGCGGTATTCTCGA-AAAGTATTCATG-TTTCG-TTT--ATGATTA-TTT-TA-TTGA-G-ATTT-ttgatatatctatgacaattactaattgttggagatgttttttttaaagaagataatgttgaaaggggggggttaaaagagcattccgaattttatccaagaattttgtggtatgtagggtaatggtagtgatatcaagagtagggtaaggatatattctagcatgtaaactattttgtttctcctggccgatgtaaccagcaactatcttctttaagggagagaaatgtgtgtcatcttttgcgttggttgtaataagatgcttgcccgaaaatatgtattttaactcgggttacattacgaacttcaattacttcatattttttttttttgtagacaaatcgggtctaagtccggaaaaagagcttttattagatataaatgaaaataatgtgtttttttgttttttttgggggggggggtttgggggggggtattgttgtttggttttgatttttttatgtttatgtgatatatatatatggaagcatgattcagttgatttatagtataataactgagtgattgtcttgccttttaaattttgcagtattcttacgtatttcttaatgtttgatgctttaaaacaataacaaaaataaataccagatgtgtttgcagctttttaaaaatctaaatgatgaaggggggggggggggagtgtcttcaatctag
gi|8 : tactgtT-TTGAGGTTGGAGAAAAATATAGCGACAAA-AAT---GAGAGA-TTTACCTCATATAA-ATA--T-ATAT--AATACA---TGCAACAG----TAGCAAGAAGATATGTTGA-A----GA-G--G-GTG-TACT-ACTCACACCGCAGATGCACTGTTTG-ACGTATTCCAA-------------CGAA-G-TGAT------CA---AC--------CTAGAGGAACTATCCGTGTTTT-GCTTT--AT--TAA-TCT-TATTTGA-TTATTT-CAGTTttacatatttccta
gi|6 : actc-TTG-GGTTGGACGACAATATAGAGA-ATA-TTT--TTAGCGA-TTTACCC------A-AT---TTATAT--AATAGT---TGCAATAG----CAGAA--GAGATCTATTGA-GAGGGG--G--G-ATG-CACC-ACTTACATCGCAGATCCACTGTTTG-CCGCATTCCAG-------------CGGC-G-TGATAAA-TTTA---ACGCGGTATCCTTGAGGAACTATTCATGTTTT-GTTTT--AA--TTATTTC-AGTTTGT-ATATCT-ggtattcatatgtcgtataacaaaactgaatgtactgaagatgattaatttaaagtaacataatcttgaaaggatggaggtaatcaggcatcacgaattacaccaggaattttgaga
gi|5 : tgcc-TTG-GGTTGGAAGACAATATGGAAACAAA-AAT--TGAGCGA-TTTACCC------T-AT---TGATAT--TATTAC---TGCAACAGTGCTCAGCAAAGAGATATATTGAGG----G--G--G-ATG-GAC-TACCGACA--GCAGATCCACCGTTTG-CCGCAATCCAGCCCTGGCCTGGAGCTAC-G-TGAT-AAATCTAATTATATGGTATTCTCAAGGAAGTATCCATGTTTT-GTTTTAAATAATTA-TTT-TATTTAA-TTTTCT-CACTTTGaataaaaataccgactgtatgaaagatgtagcataatcttgaagggagcgggggtaaaaaggcatcccgaattacaccatggattcgtggtatgtaagagtaatgtaccgtatatcaatcaaagtatggagaaaggatatttttaaaacatgtaaa
gi|7 : taGAAAAATA-TATAGCGACAAA------TGAGAGA--TTACCC------ATATAAAT-ATAT--AATAATACATGCAACAG----TAGCAAGAAGACATGTTGA-A----GAAG--G-GTGTTACTAACTCACACCGCAGATGCACTGTTTGAGCGTATTCCA-------------ACGAA-G-T--T-GGATC-A---AC--------CTAGAGGAACTATCCGTGTGTTTGCTTT--AT--ATA-ATCTTATTTGATTTATTTCCAGTTtattgatacatgtatatctagttaataacaatactgattgtatggaagatgattatttcaaagtagcataatcttgaagggggcagggtaaaaaggcatcatgaattacaccatgaatttcgtggtatttaggagtaccacatatatatggagaaaggatattattaaaaactcgtaaataattatgcattctcctgcaaagtaaacacaacagtattcttgtttaa
gi|12 : tcttttgaggtatggaA-ATTGCTGAGCAA-TTTGTCT------G-AT---T--TATTAAATAGC---TGCACCAG----TAGAGAAGAGATAAATTG--G----G--G--G-ATA-C---TACGGGCGTCGCAGATGCATTGggtatcatatgtcgtataacaaaaaacctgaatgtatctgaagatgatctaatttcaaagtaacataacttgaaggatggagtaaatcaggcatctacaaattacaccaggatttgaga
gi|16 : tcttgagttggatgacatgaaataacattttgagctGATATATTGA-G----G--G--AGATG-CAC-TATGGACATCGCAGAACCACTATTTG-TCGCATTCCA-------------GCGAC-G-TGAT-AAATCTA---GCGCGGTATTCTgt
gi|2 : CAATTACTAATTGT---TGGAGATG--TTTTTTTTAAAG-AAG--ATA-ATG-TTGAAA---GGGG--GGGGTTAAA--AGAGCATTC-CGAATTTTATCCAAG-AATTTTGTGGTATGT-AGGG-TAATGGT-A--GTGATATCAA-GA---GTA-GGGTAAGGATATAT-TCTA--GCATGTAAACT-ATTT-TGTTTCTCCTG-GCCGATGTAACCAGCAAC--TAT-CTTCTTTAAG-GGAGAGAAA----TGTGTG-TCATCTTTTGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTT---AACTCGGGTT-ACA-TTACGAACTTC-----AAT---TACTTCATATTTTTT----TTTTTTGTAGACAAA-TCG-GGTCTAAGTCCGGAA-------------------AAAGAGC-TTT-T-ATTAGAT-----AT-AAA-TG--AAAAT-AATGT-GTT-------TTTTTGTTTTTTTTGGGGGGGGGGGTTTG--------GGGGGGG-------------GTATTGT-TGTTTGG--TTTTGATTT-TTTTATGTTTATGTG-----ATATATATATATGGAAGC---ATGATTCAGTT---------GATTT--A---TA-GTAT------AATAA-CTGAGTGATTGTCTTGCCTTTTAAATTTTGCAGTATTCTTA-CG-TATTTC-T-TAATGTTTG-ATG-CTTT-A--AAACA-ATAA--CAAAAATAAATACCAG-ATGTGTTTGCA-GCTTT-----TTAAAAA------------TCTAAA-TGATGAAGGGGGGGGGGG------GGGAGTGTCTTCAA-TCTAGa
gi|5 : actgttttgggttgaaagataagaaagagacaaaatttgggcgacttattcaattcatgtaatcgttgcaacagcagaaaagagatatattgagggtaatgactaggggtatcgaagattcactgtttgccgcgttccgcgacgttgataatctaacgcggtatttgggaagtattcggtttgtgtttattctattgaattggtatttccagtttcttgttgatatatctatgaCAATA-CTGATTGTAT-GGAAGATGATTATTTC--AAAG-TAGC-ATA-ATC-TTGAA---GGGGGC-AGGGTAAAA--AG-GCATCA-TGAATTACA-CCATGAA-TTTCGTGGTATTT-AGG----------A--G---TACCACATATATATG-GAGAAAGGATAT-TATTAAAAACTCGTAAA-T-AATTATGCATTCTCCT-GC-AAAGTAAACA-CAACAGTATTCTTGTTTAA
gi|8 : tattgggttggaagacaatatggaaacaaaaattgagcgatttaccctattgatattattactgcaacagtgctcagcaaagagatatattgagggggatggactaccgacagcagatccaccgtttgccgcaatccagccctggcctggagctacgtgataaatctaattatatggtattctcaaggaagtatccatgttttgttttaaataattattttatttaattttctcactttgtattgatacatgtatatctagttaataaAAA--CTGAATGTAC-TGAAGATGATTAATTT--AAAGTAA--CATA-ATC-TTGAAA--GGATG--GAGGTAATC--AG-GCATCA-CGAATTACA-CCAGGAA-TTTTG
gi|7 : actctttgaggttggagaaaaatatagcgacaaaaatgagagatttacctcatataaatatatataatacatgcaacagtagcaagaagatatgttgaagagggtgtactactcacaccgcagatgcactgtttgacgtattccaacgaagtgatcaacctagaggaactatccgtgttttgctttattaatcttatttgattatttcagttggtattcatatgtcgtataacaAAC--CTGAATGTATCTGAAGATGATCTAATTTCAAAGTAA--CATAACT---TGAAGGATGGAG-------TAAATCAG-GCATCTACAAATTACA-CCAGG-A-TTTaga
gi|6 : tcttttgaggtatggagaaaaatatatagcgacaaatgagagattacccatataaatatataataatacatgcaacagtagcaagaagacatgttgaagaagggtgttactaactcacaccgcagatgcactgtttgagcgtattccaacgaagttggatcaacctagaggaactatccgtgtgtttgctttatataatcttatttgatttatttccagttggtatcatatgtcgtataacaaaaAAGGGAGCGGGGGTAAAA--AG-GCATCC-CGAATTACA-CCATG-G-ATTCGTGGTATGTAAGAG-TAATG--TACCGT-ATATCAATCA-AAGTATGGAGAAAGG-ATATTTTTAAAACATGTAAA-gaga
gi|15 : tgccttgggttggacgacaatatagagaatatttttagcgatttacccaatttatataatagttgcaatagcagaagagatctattgagaggggggatgcaccacttacatcgcagatccactgtttgccgcattccagcggcgtgataaatttaacgcggtatccttgaggaactattcatgttttgttttaattatttcagtttgtatatctaataaaaataccgactgtatgaaagatgtagcataatcttgTATGT-AGGACTAATG--TACCGA-ATATCAATCA-AAGTA-TGGAAGAGGGATATTTTAAAAACACGTAAA-TAATTAATGT-TTTCCCATGC-GAGGAAAACA-CAA
gi|9 : TTTTTTTTTTTTT----GAGACAAA-TCG--GTCAAAGTCCACGGACAAAGAAACACTTTACAAATCGAGCATCTATTATTAGATTAATAATTAAAATGACAAAATGAATGTAGTTACAACAAGTGTTTTTGTTTT---------G----------TTTTGGGGGGGGGGGCGGGTGAAATTGTTGTTTGTTT-TGATTTTTTTTTTTTTTTTATT--T-TGGATATATATTTATA-ATA-AAGAGATATAAATCAGTTGATTTTATCAATATTAG---TATA-CT------GA-AG-CT---GAAT--TTTT-T--TTTG--TTTA
gi|11 : ttATATATTTTTGCAAG-----CGAATTGG-----------AGGAT--AAATTA-A-ATATCATCGA-AGGCT---GAAT--TTTTGC--GT-GGATCTATCAAT--TCTTATTT-TATTTC-TAAA-TGTTTGC----TTTTCATCAAATAC-CAA--AATCAATAAA-A--GGAA--TGTTT-CA-gagtaaactatgcatgtgcattcat
gi|3 : tataaaatctaatatcttattagatttagtattggaatgactggcaaagtgaatgtaaaAT--A---CG-A-TT------GA-AG-CT---TAAT--TTTTGT--TTTGATCTAAGCAAT--TCTTA-CATTATTTG-TATAATGCTTGCATGATTTTCA--ACAGATATAA--AAAAAA-A------------TATTT-CA-AGCTTACTGGTT--------------ATTTTTAAA-AGAT-----AGGA--AGG------GGT---GTCTCC-AGCCTAGCCAAGT-GAGAGGA--TTCTGTAAA----CTTGTGTATTT---C-AAACTCGG---ATATTTCAA--------AATTTGGACACAT-GGGAAGACAagc
gi|4 : gaattcgttgatttatcaaTTTATTGAGA-TTTTTACA-TATTTCCTAAAATGTTTGCATG-CTTTCC--AA-CACATAAAAGAAAAATAA-CA--AGAATAT-----CAAGCCTT-----TT-------TTTTTTAAATTCCAAAATGAT-----ATGAGGGTGTGTGTTGGG---GTC--C-AATCTAGCCAAGT-GAGACAATTCTTCGTAAAA---CCTGT----------------------ATATTTCAA--------AACTCGGACGCAT-GGGAAGACAactagtagtatgcaatcataaaacaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatcaaataaataaaaacatgcattaaatctaacattctttacattgcattacattgaagtgtacaatgtacatcttccaacgaatagattgtatgcatgtagtgattgtataaaataacaaacataatgagattcaacgagagcttggattttaatgtttacaaattaattcatcaattatcctcagattatgaagacagagtgtatgttcagatgtagcagttatcatctggtt
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): ATACAAAATCTAATACTTTATCAGGTTACATGTACACTGAGATGTGCATTCACTGAGATGTGCATCTTCCAACGAATTAAATGGTATATAAAATGATTGTAAATTAAAT
Unaligned ( gi|14 ): TGAGAAATTCTTAAATAAACTGTGTATGCAAACCTTCTAGGCATATAGGACGACAACAATATTACGCGAGACTTGAAACCACGCTATTTTACATTGTACCAAG
Unaligned ( gi|18 ): ATGTAAGGATATTAGCCGAATATCAATCAAAGTTATGGAAGAGGGATATTTTAAAAACACGTA
Alignments
lowQualScore : 111111111111111111111111111111111111 1111111111111111
lowQualScore : 111111111 111111 333333333 1111 11 2222222222 1 22 111 1 55555555555555555555555555555555555555555555555555555555555 11 111 11111 333 11 11111 1 11 11 1 1 1 1 11 1 1 11 1 4444 2 1 1 11 333 1 2222 55555555555 1 1 2222 1 111 222222222222222222222222222222222222 44444444 1 66666666 888888888888888888888888888888888888888 44444444 1111 1 333333333333 6666666666666666666666666666666666666666 22222 111 22 111 1111 11 22222222222 0000000000000000 1 1 33333 444444444444444 1 1 1 1 777777777777777777777777 44444444 1
lowQualScore : 4 8 4 0 9999 444444444 888888 4 999 111111111 66 888 0000 4 9999 00 8 66 99 4 4 1 0 5 5 888 1111111111 5 5 2 5 888 1 33 1 7 88 77 11 5 0 5 000 1 6 99999999999999999999999999999999999999999999999999999999999 99 1 0 8 0 000 22 44444 6 000 7 6 6 6 77 6 1 9 6 44 66666 2 0 00 9999 99 6 7 8 0 3 0 0 0 00 0 1 3 0 11 7 1 3 2222 0 5 5 77 555 5 1111 3 2 88888888888 5 5 3333 3 555 1 333333333333333333333333333333333333 99999999 7 2 7 66666666 1 1 1 555555555555555555555555555555555555555 1 88888888 999 1 0 7 0 8888 0 666666666666 2 4 8888888888888888888888888888888888888888 8 8 1 00000 111 44 1 2 11 666 1 8 8 99 0 8 1111 0 44 11 0 77777777777 3 8 8 0000000000000000 0 0 88888 666666666666666 77 0 6 3 0 7 3 7 333333333333333333333333 88888888 3
lowQualScore : . . . . .... ......... ...... . ... ......... .. ... .... . .... .. . .. .. . . . . . . ... .......... . . . . ... . .. . . .. .. .. . . . ... . . ........................................................... .. . . . . ... .. ..... . ... . . . . .. . . . . .. ..... . . .. .... .. . . . . . . . . .. . . . . .. . . . .... . . . .. ... . .... . . ........... . . .... . ... . .................................... ........ . . . ........ . . . ....................................... . ........ ... . . . . .... . ............ . . ........................................ . . . ..... ... .. . . .. ... . . . .. . . .... . .. .. . ........... . . . ................ . . ..... ............... .. . . . . . . . ........................ ........ .
lowQualScore : 4 9 4 9 4444 111111111 222222 4 888 000000000 11 888 6666 4 4444 66 9 11 11 4 4 0 1 0 0 888 9999999999 0 0 0 0 888 4 11 0 3 00 99 44 7 6 7 444 4 7 00000000000000000000000000000000000000000000000000000000000 00 0 8 0 8 888 22 11111 7 222 8 7 7 7 77 7 0 8 7 00 00000 5 3 22 3333 00 7 5 0 0 2 0 0 0 22 0 0 0 0 00 3 0 3 5555 0 0 0 55 000 0 0000 0 5 00000000000 5 5 3333 3 333 0 000000000000000000000000000000000000 33333333 3 0 3 00000000 0 0 0 000000000000000000000000000000000000000 0 00000000 333 0 7 3 2 2222 0 222222222222 0 6 4444444444444444444444444444444444444444 0 0 0 00000 888 88 0 8 66 888 4 0 0 66 8 0 8888 8 00 00 8 88888888888 2 0 0 8888888888888888 0 0 88888 222222222222222 55 5 7 3 7 3 3 3 333333333333333333333333 33333333 3
consensus : TGT-TTG-GGT-TGGAAGACA----ATA-----TA--GAGACAAA-ATT--TGAGCGA-TTTACCCG-AT-------T-ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGA-G----G--G-GA--TGC-ACT-A-CTGACATCGCAGATCCACTGTTTGC-CGCATTCCAG-C---G----------AC-G-TGATAAA-TCTA---ACGCGGTATTCTCGAGGAAGTATCCGTGTTTT-GT-TTT--AT--T-TATTTTA-TTTGA-NTATTT-CAGTTTGCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAT--CTGATTGTAT-TGAAGATGATTTNTTTTCAAAGTAAG-CATAAT-CTTGAAA-GGGGGCGG-GG-TAAA-AAGGCATC-NCGAATTACA-CCANGAATTTCGTGGTATGT-AGGG-TAATG--T--ACCGNATATCAATCAAAGT-A--GGGAAAGGG-ATATT-TTAAAAACACGTAAA-T-ATTTATGT-TT-TC-CCG-GC-GANGTAANCA-CAACAGTATTCTTCTTT-AAGGGAGAGAAAATGTTGTGTGCTCATCCTTCGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTTTAAAACTCGGGTTCACAATTACGNANTTCTTGAAAATCTCTACTTCATATTTTTTTTTTTTTTTTG-AGACAAA-TCG-GGTCTAAGTC--CGGA-AAAGA---GCTT-----ATCGAGCATCT-TTATTAGATTAAT---TAAAATGACAAAATGAATGTAGTT-------GTTTTGTTGTTTT-----GGG---GTTT-TTTTGGGGGGGGGGGC-------ATTGTTGTTTGTTT--GNTTTTNATTTTTTTTTTATTTATGTGG--ATATATA-TATATATATGAAG----ATGAATCGG--------TTGA---T-------AT--ATA-------A-NTGA-AG-CTGAAT-----TTTTGC--TTTGAATTTATCAATA-TCTT-A-CGT-ATTTC-TANAATGTTTGCATG-CTTTCA--AAACACATAAAA--AAAATAAACA--AGAATATGTTT-CA-GCCTT-----TTAAA---AA-ATTCT-AAA-TGAT-A---AGGAGGGGG------GGG------GTCTTCAATCTAGCCAAGT-GAGACGATTCTTCGT-AAAACCTGTGT-T-TTC-----AAACTCGG---ATATTTCAA--------AACTCGGACGCAT-GGGAAGACA
Reference ( family-4448 ) : TGT-TTG-GGT-TGGAAGACA----ATA-----TA--GAGACAAA-ATT--TGAGCGA-TTTACCCG-AT-------T-ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGA-G----G--G-GA--TGC-ACT-A-CNGACATCGCAGATCCACTGTTTGC-CGCATTCCAG-C---G----------AC-G-TGATAAA-TCTA---ACGCGGTATTCTCGAGGAANTATCCGTGTTTTCGT-TTT--AT--T-TATTTTA-TTTGA-NTATTT-CAGTTTGCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAT--CTGANTGTAT-TGAAGATGATTNNTTTTCAAAGTAAG-CATAAT-CTTGAAAAGGGGGCGG-GG-TAAA-AAGGCATC-NCGAATTACA-CCANGAATTTCGTGGTATGT-AGGG-TAATG--T--ACCGTATATCAATCAAAGT-A--GGGAAAGGGTATATT-TTNAAAACACGTAAA-T-ATTTATGT-TT-TC-CCG-GC-GANGTAAACA-CAACAGTATTCTTNTTT-AAGGGAGAGAAA----TGTGTG-TCATCTTTTGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTT---AACTCGGGTT-AC-ATTACGAACTTC-----AAT---TACTTCATATTTTTTTTTTTTTTTTGNAGACAAA-TCG-GGTCNAAGTCCGCGGACAAAGAAACACTTTACAAANNGAGCATCTATTATTAGATTAATAATTAAAATGACAAAATGAATGTAGTTACAACAANTNTTNTTNTTTTTGGGGGGGGGGGTTTGTTTTGGGGGGGGGGGCGGGTGAAANTGTTGTTTGTTTGNGATTTTNNTTTTTTTTNTGTTTATGTGG--ATATATA-TATATATATGAAG----ACGAATCGG--------TTAA---T-------AT--ATA-------A-NTGA-AG-CTNAAT-----TTTTGC--TTTGAATTTANCGATA-TCTT-A-CGT-ATTTC-TANAATGTTTGCATG-CTTTCA--AAACACATAAAA--AAAATAAACA--AGAATGTGTTT-CA-GCCTT-----TT---------ATTCT-AAA-TGAT-----AGGAGGGGG------GGG------GTCTCCAGTCTAGCCAAGT-GAGACGATTCTCCGT-AAAACCTGTGTAT-TTC-----AAACTCGG---ATATTTCAA--------AACTCGGACGCAT-GGGAAGACA
gi|1 : TGT-TTG-GGT-TGAAAGATA----ATA-----AA--GAGACAAA-ATT--TGAGCGACTTTATCCA-AT-------T-ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGA-G----G--G-AA--TGC-ACTTA-CTGATATCGAAGATCCACTGTTTGC-CGCTTTCCAGGC---G----------AC-G-TGATAAAATCTA---ACGCGGTATTCTCGAGGAAGTATTCGTGTTTTCGT-TTT--AT--C-TATTCAA-TTTGA-GTATTT-CAGTTTGCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAT--CTAATTGTAT-TAACGATGATTTTTTTTTAAAG-AAGCCATACTGATTGAAAAAGGGGGGG-GG-TTAA-AACGCATC-CCGAATTACA-CCACG-ATTTCGTGGTATGT-AGGG-TAATGGTT--A--GTATATCAAAGAACGT-A--GGGTAACGATATATA-TCTAAAGCATGTAAA-T-ATTTATGTATT-TC-TCG-GC-GATGTAACCA-CAACAATATTCTTCTTTAAAAGGAGAGAAAATGTTGTGTACTCATTCTTCGCGTT-GTT-TAATAAGATGCTTG--CGAAAATATGTATTTTTAAAACT-GGGTTCACAATTACGCAATTCTTGAAAATCTCTACTTC-TATTTTTTTTTTTTTT----AGACAAAGTCGCAGTCTAAGTC------------------------ATCGAGCATTT-TAATTAGA-TA-----TAAACTGACAAAATAAATGTAGCT-------GTTTTGTTGTTTT-----GGGTTTATTTTTTTTGGGGGGG-------------TTGTTGTGTGTTT---CTTTTCATTTATTTTTTATTGATATAATTATATATA-TATATATATAAGA----ATGAATCAG----------AA---T-------AT--ATA-------A-ATGA-AG-CTCGAT-----TTTTGC--TTTGAATTTATCAATG-TCTT---CGT-ATTTC-TAAAATGTTTGCATG-CTTTAA--AAACACATAAGA--AAAATAAACA--AGAATTTGTTT-CA-GCCTT-----TTAAAAAAAAAATTTT-AAA-TGATTAGCGAGGAGGGGG------GGG------GTCTTCA-TCTAGC--AGTAGAGACAACCTTTCGTAAAAATCTTTGTTTATTCAAACAAAACTCAGCCAATATTTCAAGATTAAAGAACTCGGACGCATAGAGAAGACA
gi|10 : T-TTG-GGT-TGAAAGATA----ATA-----AA--GAGACAAACAT-----AGCGA-TTTACC-A-AT-------T-ATAT--AA--GT---TGCAAC-G----CA-AAAAGAGATATATTGA-G----G--G-GAGATGC-ACT-A-CTGACATCGAAGATCCACTGTTAGC-CGCAT-CCAG-C---G----------ACTG-TGATAAA-TCTA---ACGCGGTATTCTCGA-AAAGTATTCATG-TTTCG--TTT--ATGAT-TATTTTA--TTGA-G-ATTT-
gi|11 : tactgtGTGA--ATGTAAAATATATTTTTGCAA----GCGAATTGGAGGATAAATTAA-----------AT--ATC-------A-TCGA-AGGCTGAAT-----TTTTGC---GTGGATCTATCAAT--TCTT-ATTTT-ATTTC-TA-AATGTTTGC----TTTTCATCAAATAC-CAAAA--TCAATAAA-A--GGAA--TGTTT-CA-ttacatatttccta
gi|12 : tataaaatctaatatcttattagatttagtattggaatgactggcaaa-TTG-AGT-TGGATGACATGAAATAACATTTT--GAGCTAA---TTGCTGAGCAA-TTTGTCTG-AT-------T--TATTAAATAGC---TGCACCAG----TAGAGAAGAGATAAATTG--G----G--G-GA--T---ACT-A-CGGGCGTCGCAGATGCATTGagc
gi|15 : tcTATGT-AGGACTAATG--T--ACCGAATATCAATCAAAGT-A--TGGAAGAGGGATATT-TTAAAAACACGTAAA-TAATTAATGT-TT-TC-CCATGC-GAGGAAAACA-CAAgt
gi|16 : GATATATTGA-G----G--GAGA--TGC-ACT-A-TGGACATCGCAGAACCACTATTTGT-CGCATTCCAG-C---G----------AC-G-TGATAAA-TCTA---GCGCGGTATTCT
gi|17 : TGTCTTG-GCT-TGGAAGACA----TTA-----CA--GAGACAAA-A-C--TGAGCGA-TTTACCTG-AT-------TGATAT--AATAa
gi|18 : acATGT-AAGG---ATA--TTAGCCGAATATCAATCAAAGTTA--TGGAAGAGGGATATT-TTAAAAACACGTAcattgtagtt
gi|2 : T-TTG-GGT-TGAAAGATA----AGA-----AA--GAGACAAA-ATT--TGGGCGA-CTTATTCA-AT-------TCATGT--AATCGT---TGCAACAG----CAGAAAAGAGATATATTGA-G----G--GTAA--TG--ACT-A-GGGGTATCGAAGATTCACTGTTTGC-CGCGTTCC-G-C---G----------AC-GTTGAT-AA-TCTA---ACGCGGTATTT---GGGAAGTATTCG-GTTT--GTGTTT--AT--TCTATTGAA-TTGG---TATTTCCAGTTT-CTTG
gi|2 : actgtCAATTACTAATTGT---TGGAGATG--TTTTTTTTAAAG-AAG--ATAAT-GTTGAAAGGGGGG--G-GT-TAAA-AGAGCATT-CCGAATTTTATCCAAGAATTTTGTGGTATGT-AGGG-TAATGG-T--AGTG-ATATCAA---GAGT-A--GGGTAAGGATATATT-CT---AGCATGTAAACT-ATTT-TGT-TTCTC-CTG-GCCGATGTAACCAGCAAC--TAT-CTTCTTT-AAGGGAGAGAAA----TGTGTG-TCATCTTTTGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTT---AACTCGGGTT-AC-ATTACGAACTTC-----AAT---TACTTCATA----TTTTTTTTTTTTGTAGACAAA-TCG-GGTCTAAGTC--CGGAAAAAGA---GCTT-----------------TTATTAGAT--AT-----AAATG--AAAAT-AATGT-GTT-------TTTTTGTTTTTTTTGGGGGGGGGGGTTT-------GGGGGGGGGT-------ATTGTTGTTT------GGTTTTGA-TTTTTTTATGTTTATGT-G--ATATATA-TATATG---GAAGC---ATGATTCAG--------TTGA---T-------TT--ATA-------GTATAATAA-CTGAGTGATTGTCTTGCCTTTTAAATTTTGCAGTATTCTT-A-CGT-ATTTC-T-TAATGTTTG-ATG-CTTT-A--AAACA-ATAACA--AAAATAAATACCAG-ATGTGTTTGCA-GCTTT-----TTAAA------AATCT-AAA-TGATGA---AGGGGGGGG------GGGGGGAGTGTCTTCAATCTAGttgatatatctatgacaattactaattgttggagatgttttttttaaagaagataatgttgaaaggggggggttaaaagagcattccgaattttatccaagaattttgtggtatgtagggtaatggtagtgatatcaagagtagggtaaggatatattctagcatgtaaactattttgtttctcctggccgatgtaaccagcaactatcttctttaagggagagaaatgtgtgtcatcttttgcgttggttgtaataagatgcttgcccgaaaatatgtattttaactcgggttacattacgaacttcaattacttcatattttttttttttgtagacaaatcgggtctaagtccggaaaaagagcttttattagatataaatgaaaataatgtgtttttttgttttttttgggggggggggtttgggggggggtattgttgtttggttttgatttttttatgtttatgtgatatatatatatggaagcatgattcagttgatttatagtataataactgagtgattgtcttgccttttaaattttgcagtattcttacgtatttcttaatgtttgatgctttaaaacaataacaaaaataaataccagatgtgtttgcagctttttaaaaatctaaatgatgaaggggggggggggggagtgtcttcaatctag
gi|3 : actgttttgggttgaaagataagaaagagacaaaatttgggcgacttattcaattcatgtaatcgttgcaacagcagaaaagagatatattgagggtaatgactaggggtatcgaagattcactgtttgccgcgttccgcgacgttgataatctaacgcggtatttgggaagtattcggtttgtgtttattctattgaattggtatttccagtttcttgttgatatatctatgaGAATTCG--------TTGA---TTTATCAAAT--ACG-------A-TTGA-AG-CTTAAT-----TTTTGT--TTTGATCTAAGCAAT--TCTT-A-CATTATTTG-TATAATGCTTGCATGATTTTCA--ACAGATATAAAA--AAAA-------------ATATTT-CA-AGCTTACTGGTT---------ATTTTTAAA-AGAT-----AGGAAGGGG------TG--------TCTCCAGCCTAGCCAAGT-GAGAGGATTCT--GT-AAA-CTTGTGTAT-TTC-----AAACTCGG---ATATTTCAA--------AATTTGGACACAT-GGGAAGACA
gi|4 : TTTATTGAGA-TTTTTA-CAT-ATTTCCTAAAATGTTTGCATG-CTTTCC--AA-CACATAAAAGAAAAATAA-CA--AGAATAT-----CAAGCCTT-----TTTTTTTTAA-ATTCC-AAAATGAT-----ATGAGGGTGTGTGTTGGG------GTC--CAATCTAGCCAAGT-GAGACAATTCTTCGT-AAAACCTGT------------------------ATATTTCAA--------AACTCGGACGCAT-GGGAAGACAactagtagtatgcaatcataaaacaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatcaaataaataaaaacatgcattaaatctaacattctttacattgcattacattgaagtgtacaatgtacatcttccaacgaatagattgtatgcatgtagtgattgtataaaataacaaacataatgagattcaacgagagcttggattttaatgtttacaaattaattcatcaattatcctcagattatgaagacagagtgtatgttcagatgtagcagttatcatctggtt
gi|5 : t-TTG-GGT-TGGAAGACA----ATA-----TG--GAAACAAA-AAT--TGAGCGA-TTTACCCT-AT-------TGATAT--TATTAC---TGCAACAGTGCTCAGCAAAGAGATATATTGAGG----G--G-GA--TGG-ACT-A-CCGACA--GCAGATCCACCGTTTGC-CGCAATCCAG-CCCTGGCCTGGAGCTAC-G-TGATAAA-TCTAATTATATGGTATTCTCAAGGAAGTATCCATGTTTT-GT-TTTAAATAAT-TATTTTA-TTTAA-TTTTCT-CACTTTGagtaatatactattacgcaaccatcaaaccacactacttacattgtgccaagatgaataaagccatgcatgaacaatctaacattctacatgtatcaaattgcattatacatcttccaacgaataaattgatatttaacatgaatatataataataaacatgaagagattcaaacgagatcttgaagttaaaattgttcaacaaacaaattttaaaattaataaatcaaatattgtcagattatcgaagaccgaatttttgttcagatctatgcagttacatgtatcattttgttt
gi|5 : taCAATA-CTGATTGTAT-GGAAGATGATTA--TTTCAAAGTA-G-CATAAT-CTTGAA--GGGGGCAG-GG-TAAA-AAGGCATC-ATGAATTACA-CCATGAATTTCGTGGTATTT-AGGA-----G--T--ACCACATAT--AT----AT-G--GAGAAAGG--ATATTATTAAAAACTCGTAAA-T-AATTATGC-AT-TCTCCT-GC-AAAGTAAACA-CAACAGTATTCTTGTTT-AAtattgatacatgtatatctagttaataacaatactgattgtatggaagatgattatttcaaagtagcataatcttgaagggggcagggtaaaaaggcatcatgaattacaccatgaatttcgtggtatttaggagtaccacatatatatggagaaaggatattattaaaaactcgtaaataattatgcattctcctgcaaagtaaacacaacagtattcttgtttaa
gi|6 : tattgggttggaagacaatatggaaacaaaaattgagcgatttaccctattgatattattactgcaacagtgctcagcaaagagatatattgagggggatggactaccgacagcagatccaccgtttgccgcaatccagccctggcctggagctacgtgataaatctaattatatggtattctcaaggaagtatccatgttttgttttaaataattattttatttaattttctcactttgtattgatacatgtatatctagttaataa-TTG-GGT-TGGACGACA----ATA-----TA--GAGA-ATA-TTT--TTAGCGA-TTTACCCA-AT-------TTATAT--AATAGT---TGCAATAG----CAGAA--GAGATCTATTGA-GAGGGG--G-GA--TGC-ACC-A-CTTACATCGCAGATCCACTGTTTGC-CGCATTCCAG-C---G----------GC-G-TGATAAA-TTTA---ACGCGGTATCCTTGAGGAACTATTCATGTTTT-GT-TTT--AA--T-TATTTCAGTTTGT-ATATCT-
gi|6 : tgccAG-CATAAT-CTTGAA--GGGAGCGG-GGGTAAA-AAGGCATC-CCGAATTACA-CCATGGA-TTCGTGGTATGTAAGAG-TAATG--T--ACCGTATATCAATCAAAGT-ATGGAGAAAGG--ATATT-TTTAAAACATGTAAA-aataaaaataccgactgtatgaaagatgtagcataatcttgaagggagcgggggtaaaaaggcatcccgaattacaccatggattcgtggtatgtaagagtaatgtaccgtatatcaatcaaagtatggagaaaggatatttttaaaacatgtaaa
gi|7 : tgccttgggttggacgacaatatagagaatatttttagcgatttacccaatttatataatagttgcaatagcagaagagatctattgagaggggggatgcaccacttacatcgcagatccactgtttgccgcattccagcggcgtgataaatttaacgcggtatccttgaggaactattcatgttttgttttaattatttcagtttgtatatctaataaaaataccgactgtatgaaagatgtT-TTGAGGTATGGAGAAAA----ATA-----TATAGCGACAAA------TGAGAGA-TT-ACCCATATAAA----T-ATAT--AATAATACATGCAACAG----TAGCAAGAAGACATGTTGA-A----GAAG-GG--TGTTACT-AACTCACACCGCAGATGCACTGTTTGAGCGTATTCCAA-C---G----------AA-G-T--TGGA-TC-A---AC--------CTAGAGGAACTATCCGTGTGTTTGC-TTT--ATA-T-AATCTTA-TTTGATTTATTTCCAGTT
gi|7 : tctAAC--CTGAATGTATCTGAAGATGATCTAATTTCAAAGTAA--CATAA--CTTGAA----GGATGG-AG-TAAATCAGGCATCTACAAATTACA-CCAGG-ATTTggtatcatatgtcgtataacaaaaaacctgaatgtatctgaagatgatctaatttcaaagtaacataacttgaaggatggagtaaatcaggcatctacaaattacaccaggatttgaga
gi|8 : tcttttgaggtatggagaaaaatatatagcgacaaatgagagattacccatataaatatataataatacatgcaacagtagcaagaagacatgttgaagaagggtgttactaactcacaccgcagatgcactgtttgagcgtattccaacgaagttggatcaacctagaggaactatccgtgtgtttgctttatataatcttatttgatttatttccagttggtatcatatgtcgtataacaaaaT-TTGAGGT-TGGAGAAAA----ATA-----TA--GCGACAAA-AAT---GAGAGA-TTTACCTC-ATATAAATAT-ATAT--AATACA---TGCAACAG----TAGCAAGAAGATATGTTGA-A----GA-G-GG--TGT-ACT-A-CTCACACCGCAGATGCACTGTTTGA-CGTATTCCAA-C---G----------AA-G-TGATCAA-CCTA----------------GAGGAACTATCCGTGTTTT-GC-TTT--AT--T-AATCTTA-TTTGA-TTATTT-CAGTTgaga
gi|8 : actcAAA--CTGAATGTAC-TGAAGATGATTAATTT--AAAGTAA--CATAAT-CTTGAAA---GGATGGAGG-TAAT-CAGGCATC-ACGAATTACA-CCAGGAATTTTGggtattcatatgtcgtataacaaaactgaatgtactgaagatgattaatttaaagtaacataatcttgaaaggatggaggtaatcaggcatcacgaattacaccaggaattttgaga
gi|9 : actctttgaggttggagaaaaatatagcgacaaaaatgagagatttacctcatataaatatatataatacatgcaacagtagcaagaagatatgttgaagagggtgtactactcacaccgcagatgcactgtttgacgtattccaacgaagtgatcaacctagaggaactatccgtgttttgctttattaatcttatttgattatttcagttggtattcatatgtcgtataacaTTTTTTTTTTTTTTTG-AGACAAA-TCG-G-TCAAAGTCCACGGACAAAGAAACACTTTACAAATCGAGCATCTATTATTAGATTAATAATTAAAATGACAAAATGAATGTAGTTACAACAAGTGTTTTTGTTTT---------------GTTTTGGGGGGGGGGGCGGGTGAAATTGTTGTTTGTTT-TGATTTTTTTTTTTTTTTTATTT---TGG--ATATATA-TTTATA-ATAAAGAGATATAAATCAG--------TTGATTTT-------ATCAATATTAGTATA-CTGA-AG-CTGAAT-----TTTT-T--TTTG--TTTAaga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATACAAAATCTAATACTTTATCAGGTTACATGTACACTGAGATGTGCATTCACTGAGATGTGCATCTTCCAACGAATTAAATGGTATATAAAATGATTGTAAATTAAAT
Unaligned ( gi|14 ): TGAGAAATTCTTAAATAAACTGTGTATGCAAACCTTCTAGGCATATAGGACGACAACAATATTACGCGAGACTTGAAACCACGCTATTTTACATTGTACCAAG
Alignments
lowQualScore : 11111111111 11111111111111111111111 111111111111111111111 11111111111111111111111111111111111 11111111111111111111111111111111111111111111
lowQualScore : 111111111 111111 333333333 1111 11 2222222222 22 111 1 222 111 111 11 1 22 111 11 1 111 1 1 11 1 1 11 1 8888 4 777 6666 44444444444 222 1 3333333 22222222222222222222222 555555555 11 1 1 66666666 222222222222222222222 6666666 2222 2 222 11 1 555555555555 00000000000000000000000000000000000 1 1 22222 11111 11 22 111 1 1111 1 11 11 00000000000000000000000000000000000000000000 1 111 777777777777777 11 11 1 777777777777777
lowQualScore : 4 8 4 0 9999 444444444 888888 4 999 111111111 66 888 0000 4 9999 00 8 66 99 4 4 0 0 5 0 5 888 1111111111 5 5 2 5 888 1 33 0 5 5 88 77 11 5 0 5 000 1 6 999999999 555 4 444 3 888 33 3 00 0 0 0 11 88 99 8 1 3 0 8 999 8 11 8 666 8 5 8 6 3 8 8 0 444 7 3 3 77 3 1 1 3 88 5 2 5555 0 6 6 000 1111 1 1 33333333333 3 111 5 4 8888888 00000000000000000000000 444444444 88 5 5 77777777 3 2 2 111111111111111111111 5555555 4444 0 1 000 4 88 6 3 777777777777 4 00000000000000000000000000000000000 0 0 55555 77777 00 3 55 111 4 0 5555 55 0 2 33 33 99 33 3 33333333333333333333333333333333333333333333 3 666 111111111111111 11 2 88 5 111111111111111
lowQualScore : . . . . .... ......... ...... . ... ......... .. ... .... . .... .. . .. .. . . . . . . . ... .......... . . . . ... . .. . . . .. .. .. . . . ... . . ......... ... . ... . ... .. . .. . . . .. .. .. . . . . . ... . .. . ... . . . . . . . . ... . . . .. . . . . .. . . .... . . . ... .... . . ........... . ... . . ....... ....................... ......... .. . . ........ . . . ..................... ....... .... . . ... . .. . . ............ . ................................... . . ..... ..... .. . .. ... . . .... .. . . .. .. .. .. . ............................................ . ... ............... .. . .. . ...............
lowQualScore : 4 9 4 9 4444 111111111 222222 4 888 000000000 11 888 6666 4 4444 66 9 11 11 4 4 7 1 0 4 0 888 9999999999 0 0 0 0 888 4 11 7 7 7 00 99 44 7 6 7 444 4 7 000000000 000 0 000 2 222 55 2 88 8 8 6 22 66 00 0 0 8 8 0 222 0 00 8 444 0 0 0 0 2 0 0 8 333 3 3 3 00 3 0 0 3 00 5 5 0000 0 0 0 000 0000 0 0 00000000000 0 000 0 0 5555555 00000000000000000000000 000000000 00 0 5 55555555 0 5 5 000000000000000000000 0000000 0000 0 0 555 0 55 7 3 333333333333 2 55555555555555555555555555555555555 0 0 00000 55555 55 0 55 000 2 0 0000 88 0 5 88 55 88 88 2 88888888888888888888888888888888888888888888 3 777 777777777777777 33 5 00 5 555555555555555
consensus : TGT-TTG-GGT-TGGAAGACA----ATA-----TA--GAGACAAA-ATT--TGAGCGA-TTTACCCG-AT-------T-ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGA-G----G--G-GA--TGC-ACT-A-CTGACATCGCAGATCCACTGTTTGC-CGCATTCCAG-C---G----------AC-G-TGATAAA-TCTA---ACGCGGTATTCTCGAGGAAGTATCCGTGT-TTT-GT-TTT--AT--T-TATTTTA-TTTGA-NTATTT-CAGTTTGCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAT--CTGANTGTAT-TGAAGATGATTNATTTTCAAAGTAAGCATAATCTTGAAAGGGGGC-GGGGTAAA-AAGGCATC-ACGAATTACA-CCANGAATTTCGTGGTATGT-AGGG-TAATG-T--ACCGNATATCAATCAAAGT-ATGGA-AGAGGG-ATATT-TTAAAAACACGTAAA-T-ATTTATGTTT-TC-CCG-GC-GANGTAAACA-CAACAGTATTCTTNTTTAAGGGAGAGAAA----TGTGTG-TCATCTTTTGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTT---AACTCGGGTT-AC-ATTACGAACTTC-----AAT---TACTTCATATTTTTTTTTTTTNTTTGAGACAAATCGGGTCNAAGTCCACGGAACAAAGAGACACTTTACAAATCGAGCATCTATTATTAGATTAATAATTAAAATGACAAAATGAATGTAGTTACAACAANTNTTNTTNTTTTTGGGGGGGGGGGTTTTTTTGGGGGGGGGGGCGGGTGAAATTGTTGTTTGTTTTGGTTTTNNTTTTTTTTNTGTTTATGTGGATATATA-TATATN--TGAAG----ACGAATCGGTTGA---T-------A-------T--ATA-------A-TTGA-AG-CTGAAT-----TTTTGC--TTTGAATTTANCGATA-TCTT-A-CGT-ATTTC-TATAATGTTTGCATG-CTTTCA--AAACACATAAAA--AAAATAAACA--AGAATATGTTT-CA-GCCTT-----TT------AAA---TTCTAAA-TGAT-AGGGAGGGGG------GGG------GTCTCCAATCTAGCCAAGTGAGACGATTCTTCGTAAAACCTGTGTATTTCAAACTCGGATATTTCAAAACTCGGACGCATGGGAAGACA
Reference ( family-4448 ) : TGT-TTG-GGT-TGGAAGACA----ATA-----TA--GAGACAAA-ATT--TGAGCGA-TTTACCCG-AT-------T-ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGA-G----G--G-GA--TGC-ACT-A-CTGACATCGCAGATCCACTGTTTGC-CGCATTCCAG-C---G----------AC-G-TGATAAA-TCTA---ACGCGGTATTCTCGAGGAAGTATCCGTGT-TTT-GT-TTT--AT--T-TATTTTA-TTTGA-NTATTT-CAGTTTGCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAT--CTGATTGTAT-TGAAGATGATTTNTTTTCAAAGTAAGCATAATCTTGAAAGGGGGC-GGGGTAAA-AAGGCATC-NCGAATTACA-CCANGAATTTCGTGGTATGT-AGGG-TAATG-T--ACCGNATATCAATCAAAGT-AGGGA-A-AGGG-ATATT-TTAAAAACACGTAAA-T-ATTTATGTTT-TC-CCG-GC-GANGTAANCA-CAACAGTATTCTTCTTTAAGGGAGAGAAAATGTTGTGTGCTCATCCTTCGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTTTAAAACTCGGGTTCACAATTACGNANTTCTTGAAAATCTCTACTTCATATTTTTTTTTTTTTTTTGAGACAAATCGGGTCTAAGTCC--GG-A-AAAGAG---CTT-----ATCGAGCATCT-TTATTAGATTAAT---TAAAATGACAAAATGAATGTAGTT-------GTTTTGTTGTTTT--------GGGGTTTTTTTGGGGGGGGGGGC-------ATTGTTGTTTG-TTTGNTTTTNATTTTTTTTTTATTTATGTGGATATATA-TATATATATGAAG----ATGAATCGGTTGA---T-------A-------T--ATA-------A-NTGA-AG-CTGAAT-----TTTTGC--TTTGAATTTATCAATA-TCTT-A-CGT-ATTTC-TANAATGTTTGCATG-CTTTCA--AAACACATAAAA--AAAATAAACA--AGAATATGTTT-CA-GCCTT-----TT------AAAAAATTCTAAA-TGAT-AAGGAGGGGG------GGG------GTCTTCAATCTAGCCAAGTGAGACGATTCTTCGTAAAACCTGTGT-TTTCAAACTCGGATATTTCAAAACTCGGACGCATGGGAAGACA
gi|1 : TGT-TTG-GGT-TGAAAGATA----ATA-----AA--GAGACAAA-ATT--TGAGCGACTTTATCCA-AT-------T-ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGA-G----G--G-AA--TGC-ACTTA-CTGATATCGAAGATCCACTGTTTGC-CGCTTTCCAGGC---G----------AC-G-TGATAAAATCTA---ACGCGGTATTCTCGAGGAAGTATTCGTGT-TTTCGT-TTT--AT--C-TATTCAA-TTTGA-GTATTT-CAGTTTGCTTGNNNNNNNNN
gi|10 : T-TTG-GGT-TGAAAGATA----ATA-----AA--GAGACAAACAT-----AGCGA-TTTACC-A-AT-------T-ATAT--AA--GT---TGCAAC-G----CA-AAAAGAGATATATTGA-G----G--G-GAGATGC-ACT-A-CTGACATCGAAGATCCACTGTTAGC-CGCA-TCCAG-C---G----------ACTG-TGATAAA-TCTA---ACGCGGTATTCTCGA-AAAGTATTCATGT-TTC-G--TTT--ATGAT-TATTTTA--TTGA-G-ATTT-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatctaattgtattaacgatgatttttttttaaagaagccatactgattgaaaaagggggggggttaaaacgcatcccgaattacaccacgatttcgtggtatgtagggtaatggttagtatatcaaagaacgtagggtaacgatatatatctaaagcatgtaaatatttatgtatttctcggcgatgtaaccacaacaatattcttctttaaaaggagagaaaatgttgtgtactcattcttcgcgttgtttaataagatgcttgcgaaaatatgtatttttaaaactgggttcacaattacgcaattcttgaaaatctctacttctattttttttttttttagacaaagtcgcagtctaagtcatcgagcattttaattagatataaactgacaaaataaatgtagctgttttgttgttttgggtttattttttttgggggggttgttgtgtgtttcttttcatttattttttattgatataattatatatatatatatataagaatgaatcagaatatataaatgaagctcgatttttgctttgaatttatcaatgtcttcgtatttctaaaatgtttgcatgctttaaaaacacataagaaaaataaacaagaatttgtttcagccttttaaaaaaaaaattttaaatgattagcgaggagggggggggtcttcatctagcagtagagacaacctttcgtaaaaatctttgtttattcaaacaaaactcagccaatatttcaagattaaagaactcggacgcatagagaagaca
gi|11 : tactgtGTGAATGTAAAATATATTTTTGCAA----GCGAATTGGAGGA---T-------AAATTAAAT--ATC-------A-TCGA-AGGCTGAAT-----TTTTGC---GTGGATCTATCAAT--TCTT-ATTTT-ATTTC-TA-AATGTTTGC----TTTTCATCAAATAC-CAAAA--TCAATAAA-A--GGA--ATGTTT-CA-ttacatatttccta
gi|12 : tataaaatctaatatcttattagatttagtattggaatgactggcaaa-TTG-AGT-TGGATGACATGAAATAACATTTT--GAGCTAA---TTGCTGAGCAA-TTTGTCTG-AT-------T--TATTAAATAGC---TGCACCAG----TAGAGAAGAGATAAATTG--G----G--G-GA--T---ACT-A-CGGGCGTCGCAGATGCATTGagc
gi|15 : tcTATGT-AGGACTAATG-T--ACCGAATATCAATCAAAGT-ATGGA-AGAGGG-ATATT-TTAAAAACACGTAAA-TAATTAATGTTT-TC-CCATGC-GAGGAAAACA-CAAgt
gi|16 : GATATATTGA-G----G--GAGA--TGC-ACT-A-TGGACATCGCAGAACCACTATTTGT-CGCATTCCAG-C---G----------AC-G-TGATAAA-TCTA---GCGCGGTATTCT
gi|17 : TGTCTTG-GCT-TGGAAGACA----TTA-----CA--GAGACAAA-A-C--TGAGCGA-TTTACCTG-AT-------TGATAT--AATAa
gi|18 : acATGT-AAGG---ATA-TTAGCCGAATATCAATCAAAGTTATGGA-AGAGGG-ATATT-TTAAAAACACGTAcattgtagtt
gi|2 : T-TTG-GGT-TGAAAGATA----AGA-----AA--GAGACAAA-ATT--TGGGCGA-CTTATTCA-AT-------TCATGT--AATCGT---TGCAACAG----CAGAAAAGAGATATATTGA-G----G--GTAA--TG--ACT-A-GGGGTATCGAAGATTCACTGTTTGC-CGCGTTCC-G-C---G----------AC-GTTGAT-AA-TCTA---ACGCGGTATTT---GGGAAGTATTCG-G--TTT-GTGTTT--AT--TCTATTGAA-TTGG---TATTTCCAGTTT-CTTG
gi|2 : actgtCAATTACTAATTGT---TGGAGATG--TTTTTTTTAAAG-AAG-ATAATGTTGAAAGGGGG--GGGTTAAA-AGAGCATT-CCGAATTTTATCCAAGAATTTTGTGGTATGT-AGGG-TAATGGT--AGTG-ATATCAA---GAGT-AGGGT-A-AGGATATATT-CTAG---CATGTAAACT-ATTT-TGTTTCTC-CTG-GCCGATGTAACCAGCAAC--TAT-CTTCTTTAAGGGAGAGAAA----TGTGTG-TCATCTTTTGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTT---AACTCGGGTT-AC-ATTACGAACTTC-----AAT---TACTTCATATTTTTTTTTTTTGT---AGACAAATCGGGTCTAAGTCC--GGAA-AAAGAG---CT----------------T-TTATTAGAT--AT-----AAATG--AAAAT-AATGT-GTT-------TTTTTGTTTTTTTTGGGGGGGGGGGTTT------GGGGGGGGGT-------ATTG----TTG-TTTGGTTTTGA-TTTTTTTATGTTTATGT-GATATATA-TATATG---GAAGC---ATGATTCAGTTGA---T-------T-------T--ATA-------GTATAATAA-CTGAGTGATTGTCTTGCCTTTTAAATTTTGCAGTATTCTT-A-CGT-ATTTC-T-TAATGTTTG-ATG-CTTT-A--AAACA-ATAACA--AAAATAAATACCAG-ATGTGTTTGCA-GCTTT-----TT------AAAAA--TCTAAA-TGATGAAGGGGGGGG------GGGGGGAGTGTCTTCAATCTAGttgatatatctatgacaattactaattgttggagatgttttttttaaagaagataatgttgaaaggggggggttaaaagagcattccgaattttatccaagaattttgtggtatgtagggtaatggtagtgatatcaagagtagggtaaggatatattctagcatgtaaactattttgtttctcctggccgatgtaaccagcaactatcttctttaagggagagaaatgtgtgtcatcttttgcgttggttgtaataagatgcttgcccgaaaatatgtattttaactcgggttacattacgaacttcaattacttcatattttttttttttgtagacaaatcgggtctaagtccggaaaaagagcttttattagatataaatgaaaataatgtgtttttttgttttttttgggggggggggtttgggggggggtattgttgtttggttttgatttttttatgtttatgtgatatatatatatggaagcatgattcagttgatttatagtataataactgagtgattgtcttgccttttaaattttgcagtattcttacgtatttcttaatgtttgatgctttaaaacaataacaaaaataaataccagatgtgtttgcagctttttaaaaatctaaatgatgaaggggggggggggggagtgtcttcaatctag
gi|3 : actgttttgggttgaaagataagaaagagacaaaatttgggcgacttattcaattcatgtaatcgttgcaacagcagaaaagagatatattgagggtaatgactaggggtatcgaagattcactgtttgccgcgttccgcgacgttgataatctaacgcggtatttgggaagtattcggtttgtgtttattctattgaattggtatttccagtttcttgttgatatatctatgaGAATTCGTTGA---TTTATCAAA-------T--ACG-------A-TTGA-AG-CTTAAT-----TTTTGT--TTTGATCTAAGCAAT--TCTT-A-CATTATTTG-TATAATGCTTGCATGATTTTCA--ACAGATATAAAA--AAAA-------------ATATTT-CA-AGCTTACTGGTT------AT----TTTTAAA-AGAT-AGGAAGGGGT------G---------TCTCCAGCCTAGCCAAGTGAGAGGATTCT--GTAAA-CTTGTGTATTTCAAACTCGGATATTTCAAAATTTGGACACATGGGAAGACA
gi|4 : TTTATTGAGA-TTTTTA-CAT-ATTTCCTAAAATGTTTGCATG-CTTTCC--AA-CACATAAAAGAAAAATAA-CA--AGAATAT-----CAAGCCTT-----TTTTTTTTAAA---TTCCAAAATGAT-A-TGAGGGTGTGTGTTGGG------GTC--CAATCTAGCCAAGTGAGACAATTCTTCGTAAAACCTGT---------------ATATTTCAAAACTCGGACGCATGGGAAGACAactagtagtatgcaatcataaaacaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatcaaataaataaaaacatgcattaaatctaacattctttacattgcattacattgaagtgtacaatgtacatcttccaacgaatagattgtatgcatgtagtgattgtataaaataacaaacataatgagattcaacgagagcttggattttaatgtttacaaattaattcatcaattatcctcagattatgaagacagagtgtatgttcagatgtagcagttatcatctggtt
gi|5 : t-TTG-GGT-TGGAAGACA----ATA-----TG--GAAACAAA-AAT--TGAGCGA-TTTACCCT-AT-------TGATAT--TATTAC---TGCAACAGTGCTCAGCAAAGAGATATATTGAGG----G--G-GA--TGG-ACT-A-CCGACA--GCAGATCCACCGTTTGC-CGCAATCCAG-CCCTGGCCTGGAGCTAC-G-TGATAAA-TCTAATTATATGGTATTCTCAAGGAAGTATCCATGT-TTT-GT-TTTAAATAAT-TATTTTA-TTTAA-TTTTCT-CACTTTGagtaatatactattacgcaaccatcaaaccacactacttacattgtgccaagatgaataaagccatgcatgaacaatctaacattctacatgtatcaaattgcattatacatcttccaacgaataaattgatatttaacatgaatatataataataaacatgaagagattcaaacgagatcttgaagttaaaattgttcaacaaacaaattttaaaattaataaatcaaatattgtcagattatcgaagaccgaatttttgttcagatctatgcagttacatgtatcattttgttt
gi|5 : taCAATA-CTGATTGTAT-GGAAGATGATTA--TTTCAAAGTA-GCATAATCTTGAA-GGGGGC-AGGGTAAA-AAGGCATC-ATGAATTACA-CCATGAATTTCGTGGTATTT-AGGA-----G-T--ACCACATAT--AT----AT-GGAGA-A-A-GG-ATATTATTAAAAACTCGTAAA-T-AATTATGCAT-TCTCCT-GC-AAAGTAAACA-CAACAGTATTCTTGTTTAAtattgatacatgtatatctagttaataacaatactgattgtatggaagatgattatttcaaagtagcataatcttgaagggggcagggtaaaaaggcatcatgaattacaccatgaatttcgtggtatttaggagtaccacatatatatggagaaaggatattattaaaaactcgtaaataattatgcattctcctgcaaagtaaacacaacagtattcttgtttaa
gi|6 : tattgggttggaagacaatatggaaacaaaaattgagcgatttaccctattgatattattactgcaacagtgctcagcaaagagatatattgagggggatggactaccgacagcagatccaccgtttgccgcaatccagccctggcctggagctacgtgataaatctaattatatggtattctcaaggaagtatccatgttttgttttaaataattattttatttaattttctcactttgtattgatacatgtatatctagttaataa-TTG-GGT-TGGACGACA----ATA-----TA--GAGA-ATA-TTT--TTAGCGA-TTTACCCA-AT-------TTATAT--AATAGT---TGCAATAG----CAGAA--GAGATCTATTGA-GAGGGG--G-GA--TGC-ACC-A-CTTACATCGCAGATCCACTGTTTGC-CGCATTCCAG-C---G----------GC-G-TGATAAA-TTTA---ACGCGGTATCCTTGAGGAACTATTCATGT-TTT-GT-TTT--AA--T-TATTTCAGTTTGT-ATATCT-
gi|6 : tgccAGCATAATCTTG-AAGGGAGCGGGGGTAAA-AAGGCATC-CCGAATTACA-CCATGGA-TTCGTGGTATGTAAGAG-TAATG-T--ACCGTATATCAATCAAAGT-ATGGAGA-AAGG-ATATT-TTTAAAACATGTAAA-aataaaaataccgactgtatgaaagatgtagcataatcttgaagggagcgggggtaaaaaggcatcccgaattacaccatggattcgtggtatgtaagagtaatgtaccgtatatcaatcaaagtatggagaaaggatatttttaaaacatgtaaa
gi|7 : tgccttgggttggacgacaatatagagaatatttttagcgatttacccaatttatataatagttgcaatagcagaagagatctattgagaggggggatgcaccacttacatcgcagatccactgtttgccgcattccagcggcgtgataaatttaacgcggtatccttgaggaactattcatgttttgttttaattatttcagtttgtatatctaataaaaataccgactgtatgaaagatgtT-TTGAGGTATGGAGAAAA----ATA-----TATAGCGACAAA------TGAGAGA-TT-ACCCATATAAA----T-ATAT--AATAATACATGCAACAG----TAGCAAGAAGACATGTTGA-A----GAAG-GG--TGTTACT-AACTCACACCGCAGATGCACTGTTTGAGCGTATTCCAA-C---G----------AA-G-T--TGGA-TC-A---AC--------CTAGAGGAACTATCCGTGTGTTT-GC-TTT--ATA-T-AATCTTA-TTTGATTTATTTCCAGTT
gi|7 : tctAAC--CTGAATGTATCTGAAGATGATCTAATTTCAAAGTAA-CATAA-CTTGAA---GGAT-GGAGTAAATCAGGCATCTACAAATTACA-CCAGG-ATTTggtatcatatgtcgtataacaaaaaacctgaatgtatctgaagatgatctaatttcaaagtaacataacttgaaggatggagtaaatcaggcatctacaaattacaccaggatttgaga
gi|8 : tcttttgaggtatggagaaaaatatatagcgacaaatgagagattacccatataaatatataataatacatgcaacagtagcaagaagacatgttgaagaagggtgttactaactcacaccgcagatgcactgtttgagcgtattccaacgaagttggatcaacctagaggaactatccgtgtgtttgctttatataatcttatttgatttatttccagttggtatcatatgtcgtataacaaaaT-TTGAGGT-TGGAGAAAA----ATA-----TA--GCGACAAA-AAT---GAGAGA-TTTACCTC-ATATAAATAT-ATAT--AATACA---TGCAACAG----TAGCAAGAAGATATGTTGA-A----GA-G-GG--TGT-ACT-A-CTCACACCGCAGATGCACTGTTTGA-CGTATTCCAA-C---G----------AA-G-TGATCAA-CCTA----------------GAGGAACTATCCGTGT-TTT-GC-TTT--AT--T-AATCTTA-TTTGA-TTATTT-CAGTTgaga
gi|8 : actcAAA--CTGAATGTAC-TGAAGATGATTAATTT--AAAGTAA-CATAATCTTGAAAGGATG--GAGGTAAT-CAGGCATC-ACGAATTACA-CCAGGAATTTTGggtattcatatgtcgtataacaaaactgaatgtactgaagatgattaatttaaagtaacataatcttgaaaggatggaggtaatcaggcatcacgaattacaccaggaattttgaga
gi|9 : actctttgaggttggagaaaaatatagcgacaaaaatgagagatttacctcatataaatatatataatacatgcaacagtagcaagaagatatgttgaagagggtgtactactcacaccgcagatgcactgtttgacgtattccaacgaagtgatcaacctagaggaactatccgtgttttgctttattaatcttatttgattatttcagttggtattcatatgtcgtataacaTTTTTTTTTTTTTTTGAGACAAATCGG-TCAAAGTCCACGG-ACAAAGAAACACTTTACAAATCGAGCATCTATTATTAGATTAATAATTAAAATGACAAAATGAATGTAGTTACAACAAGTGTTTTTGTTTT--------G------TTTTGGGGGGGGGGGCGGGTGAAATTGTTGTTTGTTTTGATTTTTTTTTTTTTTTTATTT---TGGATATATA-TTTATA-ATAAAGAGATATAAATCAGTTGATTTT-------A-------TCAATATTAGTATA-CTGA-AG-CTGAAT-----TTTT-T--TTTG--TTTAaga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATACAAAATCTAATACTTTATCAGGTTACATGTACACTGAGATGTGCATTCACTGAGATGTGCATCTTCCAACGAATTAAATGGTATATAAAATGATTGTAAATTAAAT
Unaligned ( gi|14 ): TGAGAAATTCTTAAATAAACTGTGTATGCAAACCTTCTAGGCATATAGGACGACAACAATATTACGCGAGACTTGAAACCACGCTATTTTACATTGTACCAAG
Alignments
lowQualScore : 1111111111111111111111111111111111111
lowQualScore : 111111111 111111 333333333 1111 11 2222222222 22 111 1 55555555555555555555555555555555555555555555555555555555555 11 222 11111 22 11 11111 11 1 1 1 1 11 1 1 11 1 4444 2 1 1 11 333 1 2222 55555555555 1 333 1 111 2222222222222222222222222222222222222 44444444 1 6666666666666666666666666666666666666666666666666666666666 11 11 222222 111 33333333333 66666666666666666666666666666666666 22222 111 22 111 11 1111 11 2222222222 77777777777777 1 111111111 44444444444444 1 1 777777777777777777777777 44444444 1
lowQualScore : 4 8 4 0 9999 444444444 888888 4 999 111111111 66 888 0000 4 9999 00 8 66 99 4 4 0 0 5 0 5 888 1111111111 5 5 77 888 1 33 0 5 5 88 77 11 5 0 5 000 1 6 99999999999999999999999999999999999999999999999999999999999 99 1 0 8 000 22 44444 6 99 7 44 6 99 6 1 9 6 44 66666 2 7 00 6 0 6 8 0 3 0 0 0 00 0 1 3 0 11 7 1 3 2222 0 5 5 77 555 5 1111 3 2 88888888888 5 1 777 3 555 1 7777777777777777777777777777777777777 99999999 7 2 7 6666666666666666666666666666666666666666666666666666666666 44 00 999 1 0 7 0 555555 777 33333333333 2 4 66 66666666666666666666666666666666666 8 8 00000 111 44 1 2 11 666 1 8 8 22 0 8 1111 0 44 11 0 6666666666 3 8 8 88888888888888 3 0 999999999 6 22222222222222 77 3 6 3 0 7 3 7 333333333333333333333333 88888888 3
lowQualScore : . . . . .... ......... ...... . ... ......... .. ... .... . .... .. . .. .. . . . . . . . ... .......... . . .. ... . .. . . . .. .. .. . . . ... . . ........................................................... .. . . . ... .. ..... . .. . .. . .. . . . . .. ..... . . .. . . . . . . . . . .. . . . . .. . . . .... . . . .. ... . .... . . ........... . . ... . ... . ..................................... ........ . . . .......................................................... .. .. ... . . . . ...... ... ........... . . .. ................................... . . ..... ... .. . . .. ... . . . .. . . .... . .. .. . .......... . . . .............. . . ......... . .............. .. . . . . . . . ........................ ........ .
lowQualScore : 4 9 4 9 4444 111111111 222222 4 888 000000000 11 888 6666 4 4444 66 9 11 11 4 4 7 1 0 4 0 888 9999999999 0 0 00 888 4 11 7 7 7 00 99 44 7 6 7 444 4 7 00000000000000000000000000000000000000000000000000000000000 00 0 8 0 666 22 11111 7 22 3 33 7 77 7 0 8 7 00 00000 5 5 00 7 7 7 0 0 2 0 0 0 22 0 0 0 0 00 3 0 3 5555 0 0 0 55 000 0 0000 0 5 00000000000 5 0 333 3 333 0 3333333333333333333333333333333333333 33333333 3 0 3 3333333333333333333333333333333333333333333333333333333333 33 33 333 0 7 3 2 888888 555 22222222222 0 6 66 22222222222222222222222222222222222 0 0 00000 888 88 0 8 66 888 4 0 0 00 8 0 8888 8 00 00 8 2222222222 2 0 0 22222222222222 2 0 555555555 5 55555555555555 55 2 7 3 7 3 3 3 333333333333333333333333 33333333 3
consensus : TGT-TTG-GGT-TGGAAGACA----ATA-----TA--GAGACAAA-ATT--TGAGCGA-TTTACCCG-AT-------T-ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGA-G----G--G-GA--TGC-AC-TA-CTGACATCGCAGATCCACTGTTTGC-CGCATTCCA-GC---G----------AC-G-TGAT-AAATCTA---ACGCGGTATTCTCGAGGAAGTATCCGTGT-TTT-GT-TTT--AT--T-TATTTTA-TTTGA-NTATTT-CAGTTTGCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAT--CTGATTGTAT-TGAAGATGATTNATTTTCAAAGTAAG-CATAAT-CTTG--AAAGGGGGC-GGGGTAAA-AAGGCATC-NCGAATTACA-CCANGAATTTCGTGGTATGT-AGGG-TAATG--T--ACCGNATATCAATCAAAGT-ATGGAAAAGGGATATT-TTAAAAACACGTAAA-T-ATTTATGT-TT-TC-CCG-GC-GANGTAANCA-CAACAGTATTCTTCTTT-AAGGGAGAGAAAATGTTGTGTGCTCATCCTTCGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTTTAAAACTCGGGTTCACAATTACGNANTTCTTGAAAATCTCTACTTCATATTTTTTTTTTTTTT---AGACAAA-TCG-GGTCTAAGTC--CGGA--AAAGAG---CTT-----ATCGAGCATCT-TTATTAGATTAAT---TAAAATGACAAAATGAATGTAGTT-------GTTTTGTTGTTTTTG--GGG---G-TTTTTTTGGGGGGGGGGGC-------ATTGTTGT-TGTTTCGGTTTTNATTTTTTTTTTATTTATGTGG----ATATA---TATATAT-ATGAAG----ATGAATCGGTTGA---T-------A-------T--ATA-------AT-TGA-AG-CTGAAT-----TTTTGC--TTTGAATTTATCAATA-TCTT-A-CGT-ATTTC-TANAATGTTTGCATG-CTTTCA--AAACACATAAAA--AAAATAAACA--AGAATATGTTT-CA-GCCTT-----TTA------AAATTCTAAA-TGA-T--AG---GGAGGGGG------GGG-----GTCTTCAATCTAGCCAAGT-GAGACGATTCTTCGT-AAAACCTGTGT-T-TTC-----AAACTCGG---ATATTTCAA--------AACTCGGACGCAT-GGGAAGACA
Reference ( family-4448 ) : TGT-TTG-GGT-TGGAAGACA----ATA-----TA--GAGACAAA-ATT--TGAGCGA-TTTACCCG-AT-------T-ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGA-G----G--G-GA--TGC-AC-TA-CTGACATCGCAGATCCACTGTTTGC-CGCATTCCA-GC---G----------AC-G-TGAT-AAATCTA---ACGCGGTATTCTCGAGGAAGTATCCGTGT-TTT-GT-TTT--AT--T-TATTTTA-TTTGA-NTATTT-CAGTTTGCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAT--CTGANTGTAT-TGAAGATGATTNATTTTCAAAGTAAG-CATAAT-CTTG--AAAGGGGGC-GGGGTAAA-AAGGCATC-ACGAATTACA-CCANGAATTTCGTGGTATGT-AGGG-TAATG--T--ACCGNATATCAATCAAAGT-ATGGAAGAGGGATATT-TTAAAAACACGTAAA-T-ATTTATGT-TT-TC-CCG-GC-GANGTAAACA-CAACAGTATTCTTNTTT-AAGGGAGAGAAA----TGTGTG-TCATCTTTTGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTT---AACTCGGGTT-AC-ATTACGAACTTC-----AAT---TACTTCATATTTTTTTTTTTTNTTTGAGACAAA-TCG-GGTCNAAGTCCACGGAACAAAGAGACACTTTACAAATCGAGCATCTATTATTAGATTAATAATTAAAATGACAAAATGAATGTAGTTACAACAANTNTTNTTNTTTTTGGGGGGGGGGGTTTTTTTGGGGGGGGGGGCGGGTGAAATTGTTGTTTGTTTTGGTTTTNNTTTTTTTTNTGTTTATGTGG----ATATA---TATATAT-NTGAAG----ACGAATCGGTTGA---T-------A-------T--ATA-------AT-TGA-AG-CTGAAT-----TTTTGC--TTTGAATTTANCGATA-TCTT-A-CGT-ATTTC-TATAATGTTTGCATG-CTTTCA--AAACACATAAAA--AAAATAAACA--AGAATATGTTT-CA-GCCTT-----TT-------AAATTCTAAA-TGA-T--AG---GGAGGGGG------GGG-----GTCTCCAATCTAGCCAAGT-GAGACGATTCTTCGT-AAAACCTGTGTAT-TTC-----AAACTCGG---ATATTTCAA--------AACTCGGACGCAT-GGGAAGACA
gi|1 : TGT-TTG-GGT-TGAAAGATA----ATA-----AA--GAGACAAA-ATT--TGAGCGACTTTATCCA-AT-------T-ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGA-G----G--G-AA--TGC-ACTTA-CTGATATCGAAGATCCACTGTTTGC-CGCTTTCCAGGC---G----------AC-G-TGATAAAATCTA---ACGCGGTATTCTCGAGGAAGTATTCGTGT-TTTCGT-TTT--AT--C-TATTCAA-TTTGA-GTATTT-CAGTTTGCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAT--CTAATTGTAT-TAACGATGATTTTTTTTTAAAG-AAGCCATACTGATTGAAAAAGGGGG--GGGGTTAA-AACGCATC-CCGAATTACA-CCACG-ATTTCGTGGTATGT-AGGG-TAATGGTT--A--GTATATCAAAGAACGT-AGGGTAACGATATATA-TCTAAAGCATGTAAA-T-ATTTATGTATT-TC-TCG-GC-GATGTAACCA-CAACAATATTCTTCTTTAAAAGGAGAGAAAATGTTGTGTACTCATTCTTCGCGTT-GTT-TAATAAGATGCTTG--CGAAAATATGTATTTTTAAAACT-GGGTTCACAATTACGCAATTCTTGAAAATCTCTACTTC-TATTTTTTTTTTTTTT---AGACAAAGTCGCAGTCTAAGTC-------------------------ATCGAGCATTT-TAATTAGA-TA-----TAAACTGACAAAATAAATGTAGCT-------GTTTTGTTGTTTT----GGGTTTATTTTTTTTGGGGGGG-------------TTGTTGTGTGTTTC--TTTTCATTTATTTTTTATTGATATAATTATATATA---TATATAT-ATAAGA----ATGAATCAG--AA---T-------A-------T--ATA-------AA-TGA-AG-CTCGAT-----TTTTGC--TTTGAATTTATCAATG-TCTT---CGT-ATTTC-TAAAATGTTTGCATG-CTTTAA--AAACACATAAGA--AAAATAAACA--AGAATTTGTTT-CA-GCCTT-----TTAAAAAAAAAATTTTAAA-TGATT--AGCGAGGAGGGGG------GGG-----GTCTTC-ATCTAGC--AGTAGAGACAACCTTTCGTAAAAATCTTTGTTTATTCAAACAAAACTCAGCCAATATTTCAAGATTAAAGAACTCGGACGCATAGAGAAGACA
gi|10 : T-TTG-GGT-TGAAAGATA----ATA-----AA--GAGACAAACAT-----AGCGA-TTTACC-A-AT-------T-ATAT--AA--GT---TGCAAC-G----CA-AAAAGAGATATATTGA-G----G--G-GAGATGC-AC-TA-CTGACATCGAAGATCCACTGTTAGC-CGCA-TCCA-GC---G----------ACTG-TGAT-AAATCTA---ACGCGGTATTCTCGA-AAAGTATTCATGT-TTC-G--TTT--ATGAT-TATTTTA--TTGA-G-ATTT-
gi|11 : tactgtGTGA----ATGTAAAATATATTT-TTGCAA----GCGAATTGGAGGA---T-------AAATTAAAT--ATC-------AT-CGA-AGGCTGAAT-----TTTTGC---GTGGATCTATCAAT--TCTT-ATTTT-ATTTC-TA-AATGTTTGC----TTTTCATCAAATAC-CAAAA--TCAATAAA-A--GGA--ATGTTT-CA-ttacatatttccta
gi|12 : tataaaatctaatatcttattagatttagtattggaatgactggcaaa-TTG-AGT-TGGATGACATGAAATAACATTTT--GAGCTAA---TTGCTGAGCAA-TTTGTCTG-AT-------T--TATTAAATAGC---TGCACCAG----TAGAGAAGAGATAAATTG--G----G--G-GA--T---AC-TA-CGGGCGTCGCAGATGCATTGagc
gi|15 : tcTATGT-AGGACTAATG--T--ACCGAATATCAATCAAAGT-ATGGAAGAGGGATATT-TTAAAAACACGTAAA-TAATTAATGT-TT-TC-CCATGC-GAGGAAAACA-CAAgt
gi|16 : GATATATTGA-G----G--GAGA--TGC-AC-TA-TGGACATCGCAGAACCACTATTTGT-CGCATTCCA-GC---G----------AC-G-TGAT-AAATCTA---GCGCGGTATTCT
gi|17 : TGTCTTG-GCT-TGGAAGACA----TTA-----CA--GAGACAAA-A-C--TGAGCGA-TTTACCTG-AT-------TGATAT--AATAa
gi|18 : acATGT-AAGG---ATA--TTAGCCGAATATCAATCAAAGTTATGGAAGAGGGATATT-TTAAAAACACGTAcattgtagtt
gi|2 : T-TTG-GGT-TGAAAGATA----AGA-----AA--GAGACAAA-ATT--TGGGCGA-CTTATTCA-AT-------TCATGT--AATCGT---TGCAACAG----CAGAAAAGAGATATATTGA-G----G--GTAA--TG--AC-TA-GGGGTATCGAAGATTCACTGTTTGC-CGCGTTCC--GC---G----------AC-GTTGAT--AATCTA---ACGCGGTATTT---GGGAAGTATTCG-G--TTT-GTGTTT--AT--TCTATTGAA-TTGG---TATTTCCAGTTT-CTTG
gi|2 : actgtCAATTACTAATTGT---TGGAGATGTTT--TTTTTAAAG-AAG--ATAAT-GTTG--AAAGGGGG--GGGTTAAA-AGAGCATT-CCGAATTTTATCCAAGAATTTTGTGGTATGT-AGGG-TAATGG-T--AGTG-ATATCAA---GAGT-AGGGTAAGGATATATT-CTAG---CATGTAAACT-ATTT-TGT-TTCTC-CTG-GCCGATGTAACCAGCAAC--TAT-CTTCTTT-AAGGGAGAGAAA----TGTGTG-TCATCTTTTGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTT---AACTCGGGTT-AC-ATTACGAACTTC-----AAT---TACTTCATATTTTTTTTTTTTGT---AGACAAA-TCG-GGTCTAAGTC--CGGAA-AAAGAG---CTT-----------------TTATTAGAT--AT-----AAATG--AAAAT-AATGT-GTT-------TTTTTGTTTTTTTTGGGGGGGGGGGTTT------GGGGGGGGGT-------ATTGTTG-----TTTGGTTTTGA-TTTTTTTATGTTTATGT-G----ATATA---TATATAT-G-GAAGC---ATGATTCAGTTGA---T-------T-------T--ATA-------GTATAATAA-CTGAGTGATTGTCTTGCCTTTTAAATTTTGCAGTATTCTT-A-CGT-ATTTC-T-TAATGTTTG-ATG-CTTT-A--AAACA-ATAACA--AAAATAAATACCAG-ATGTGTTTGCA-GCTTT-----TTA------AAAATCTAAA-TGA-TGAAG---GGGGGGGG------GGGGGAGTGTCTTCAATCTAGttgatatatctatgacaattactaattgttggagatgttttttttaaagaagataatgttgaaaggggggggttaaaagagcattccgaattttatccaagaattttgtggtatgtagggtaatggtagtgatatcaagagtagggtaaggatatattctagcatgtaaactattttgtttctcctggccgatgtaaccagcaactatcttctttaagggagagaaatgtgtgtcatcttttgcgttggttgtaataagatgcttgcccgaaaatatgtattttaactcgggttacattacgaacttcaattacttcatattttttttttttgtagacaaatcgggtctaagtccggaaaaagagcttttattagatataaatgaaaataatgtgtttttttgttttttttgggggggggggtttgggggggggtattgttgtttggttttgatttttttatgtttatgtgatatatatatatggaagcatgattcagttgatttatagtataataactgagtgattgtcttgccttttaaattttgcagtattcttacgtatttcttaatgtttgatgctttaaaacaataacaaaaataaataccagatgtgtttgcagctttttaaaaatctaaatgatgaaggggggggggggggagtgtcttcaatctag
gi|3 : actgttttgggttgaaagataagaaagagacaaaatttgggcgacttattcaattcatgtaatcgttgcaacagcagaaaagagatatattgagggtaatgactaggggtatcgaagattcactgtttgccgcgttccgcgacgttgataatctaacgcggtatttgggaagtattcggtttgtgtttattctattgaattggtatttccagtttcttgttgatatatctatgaGAATTCGTTGA---TTTATCAAA-------T--ACG-------AT-TGA-AG-CTTAAT-----TTTTGT--TTTGATCTAAGCAAT--TCTT-A-CATTATTTG-TATAATGCTTGCATGATTTTCA--ACAGATATAAAA--AAAA-------------ATATTT-CA-AGCTTACTGGTT-------AT-TTTTAAA-AGA-T--AG---GAAGGGGT------G--------TCTCCAGCCTAGCCAAGT-GAGAGGATTCT--GT-AAA-CTTGTGTAT-TTC-----AAACTCGG---ATATTTCAA--------AATTTGGACACAT-GGGAAGACA
gi|4 : TTTATTGAGA-TTTTTA-CAT-ATTTCCTAAAATGTTTGCATG-CTTTCC--AA-CACATAAAAGAAAAATAA-CA--AGAATAT-----CAAGCCTT-----TTTTTTTT-AAATTCCAAAATGA-T--AT---G-AGGGTGTGTGTTGGG-----GTC--CAATCTAGCCAAGT-GAGACAATTCTTCGT-AAAACCTGT------------------------ATATTTCAA--------AACTCGGACGCAT-GGGAAGACAactagtagtatgcaatcataaaacaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatcaaataaataaaaacatgcattaaatctaacattctttacattgcattacattgaagtgtacaatgtacatcttccaacgaatagattgtatgcatgtagtgattgtataaaataacaaacataatgagattcaacgagagcttggattttaatgtttacaaattaattcatcaattatcctcagattatgaagacagagtgtatgttcagatgtagcagttatcatctggtt
gi|5 : t-TTG-GGT-TGGAAGACA----ATA-----TG--GAAACAAA-AAT--TGAGCGA-TTTACCCT-AT-------TGATAT--TATTAC---TGCAACAGTGCTCAGCAAAGAGATATATTGAGG----G--G-GA--TGG-AC-TA-CCGACA--GCAGATCCACCGTTTGC-CGCAATCCA-GCCCTGGCCTGGAGCTAC-G-TGAT-AAATCTAATTATATGGTATTCTCAAGGAAGTATCCATGT-TTT-GT-TTTAAATAAT-TATTTTA-TTTAA-TTTTCT-CACTTTGagtaatatactattacgcaaccatcaaaccacactacttacattgtgccaagatgaataaagccatgcatgaacaatctaacattctacatgtatcaaattgcattatacatcttccaacgaataaattgatatttaacatgaatatataataataaacatgaagagattcaaacgagatcttgaagttaaaattgttcaacaaacaaattttaaaattaataaatcaaatattgtcagattatcgaagaccgaatttttgttcagatctatgcagttacatgtatcattttgttt
gi|5 : taCAATA-CTGATTGTAT-GGAAGATGATTA--TTTCAAAGTA-G-CATAAT-CTTG--AA-GGGGGC-AGGGTAAA-AAGGCATC-ATGAATTACA-CCATGAATTTCGTGGTATTT-AGGA-----G--T--ACCACATAT--------AT-ATGGAGAAAGGATATTATTAAAAACTCGTAAA-T-AATTATGC-AT-TCTCCT-GC-AAAGTAAACA-CAACAGTATTCTTGTTT-AAtattgatacatgtatatctagttaataacaatactgattgtatggaagatgattatttcaaagtagcataatcttgaagggggcagggtaaaaaggcatcatgaattacaccatgaatttcgtggtatttaggagtaccacatatatatggagaaaggatattattaaaaactcgtaaataattatgcattctcctgcaaagtaaacacaacagtattcttgtttaa
gi|6 : tattgggttggaagacaatatggaaacaaaaattgagcgatttaccctattgatattattactgcaacagtgctcagcaaagagatatattgagggggatggactaccgacagcagatccaccgtttgccgcaatccagccctggcctggagctacgtgataaatctaattatatggtattctcaaggaagtatccatgttttgttttaaataattattttatttaattttctcactttgtattgatacatgtatatctagttaataa-TTG-GGT-TGGACGACA----ATA-----TA--GAGA-ATA-TTT--TTAGCGA-TTTACCCA-AT-------TTATAT--AATAGT---TGCAATAG----CAGAA--GAGATCTATTGA-GAGGGG--G-GA--TGC-AC-CA-CTTACATCGCAGATCCACTGTTTGC-CGCATTCCA-GC---G----------GC-G-TGAT-AAATTTA---ACGCGGTATCCTTGAGGAACTATTCATGT-TTT-GT-TTT--AA--T-TATTTCAGTTTGT-ATATCT-
gi|6 : tgccAG-CATAAT-CTTG---AAGGGAGCGGGGGTAAA-AAGGCATC-CCGAATTACA-CCATGGA-TTCGTGGTATGTAAGAG-TAATG--T--ACCGTATATCAATCAAAGT-ATGGAGAAAGGATATT-TTTAAAACATGTAAA-aataaaaataccgactgtatgaaagatgtagcataatcttgaagggagcgggggtaaaaaggcatcccgaattacaccatggattcgtggtatgtaagagtaatgtaccgtatatcaatcaaagtatggagaaaggatatttttaaaacatgtaaa
gi|7 : tgccttgggttggacgacaatatagagaatatttttagcgatttacccaatttatataatagttgcaatagcagaagagatctattgagaggggggatgcaccacttacatcgcagatccactgtttgccgcattccagcggcgtgataaatttaacgcggtatccttgaggaactattcatgttttgttttaattatttcagtttgtatatctaataaaaataccgactgtatgaaagatgtT-TTGAGGTATGGAGAAAA----ATA-----TATAGCGACAAA------TGAGAGA-TT-ACCCATATAAA----T-ATAT--AATAATACATGCAACAG----TAGCAAGAAGACATGTTGA-A----GAAG-GG--TGTTAC-TAACTCACACCGCAGATGCACTGTTTGAGCGTATTCCA-AC---G----------AA-G-T--T-GGATC-A---AC--------CTAGAGGAACTATCCGTGTGTTT-GC-TTT--ATA-T-AATCTTA-TTTGATTTATTTCCAGTT
gi|7 : tctAAC--CTGAATGTATCTGAAGATGATCTAATTTCAAAGTAA--CATAA--CTTG--AA---GGAT-GGAGTAAATCAGGCATCTACAAATTACA-CCAGG-ATTTggtatcatatgtcgtataacaaaaaacctgaatgtatctgaagatgatctaatttcaaagtaacataacttgaaggatggagtaaatcaggcatctacaaattacaccaggatttgaga
gi|8 : tcttttgaggtatggagaaaaatatatagcgacaaatgagagattacccatataaatatataataatacatgcaacagtagcaagaagacatgttgaagaagggtgttactaactcacaccgcagatgcactgtttgagcgtattccaacgaagttggatcaacctagaggaactatccgtgtgtttgctttatataatcttatttgatttatttccagttggtatcatatgtcgtataacaaaaT-TTGAGGT-TGGAGAAAA----ATA-----TA--GCGACAAA-AAT---GAGAGA-TTTACCTC-ATATAAATAT-ATAT--AATACA---TGCAACAG----TAGCAAGAAGATATGTTGA-A----GA-G-GG--TGT-AC-TA-CTCACACCGCAGATGCACTGTTTGA-CGTATTCCA-AC---G----------AA-G-TGAT-CAACCTA----------------GAGGAACTATCCGTGT-TTT-GC-TTT--AT--T-AATCTTA-TTTGA-TTATTT-CAGTTgaga
gi|8 : actcAAA--CTGAATGTAC-TGAAGATGATTAATTT--AAAGTAA--CATAAT-CTTG--AAAGGATG--GAGGTAAT-CAGGCATC-ACGAATTACA-CCAGGAATTTTGggtattcatatgtcgtataacaaaactgaatgtactgaagatgattaatttaaagtaacataatcttgaaaggatggaggtaatcaggcatcacgaattacaccaggaattttgaga
gi|9 : actctttgaggttggagaaaaatatagcgacaaaaatgagagatttacctcatataaatatatataatacatgcaacagtagcaagaagatatgttgaagagggtgtactactcacaccgcagatgcactgtttgacgtattccaacgaagtgatcaacctagaggaactatccgtgttttgctttattaatcttatttgattatttcagttggtattcatatgtcgtataacaTTTTTTTTTTTTTTTGAGACAAA-TCG-G-TCAAAGTCCACGGA-CAAAGAAACACTTTACAAATCGAGCATCTATTATTAGATTAATAATTAAAATGACAAAATGAATGTAGTTACAACAAGTGTTTTTG-TTTTG-------------TTTTGGGGGGGGGGGCGGGTGAAATTGTTGTTTGTTTTGATTTTTTTTTTTTTTTTATTT---TGG----ATATA---TATTTATAATAAAGAGATATAAATCAGTTGATTTT-------A-------TCAATATTAGTATAC-TGA-AG-CTGAAT-----TTTT-T--TTTG--TTTAaga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATACAAAATCTAATACTTTATCAGGTTACATGTACACTGAGATGTGCATTCACTGAGATGTGCATCTTCCAACGAATTAAATGGTATATAAAATGATTGTAAATTAAAT
Unaligned ( gi|14 ): TGAGAAATTCTTAAATAAACTGTGTATGCAAACCTTCTAGGCATATAGGACGACAACAATATTACGCGAGACTTGAAACCACGCTATTTTACATTGTACCAAG
Alignments
lowQualScore : 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1111111111111111111111111
lowQualScore : 111111111 111111 333333333 1111 11 2222222222 22 111 1 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 222222222222 11111 22 11 11111 11 1 1 1 1 11 1 1 11 1 2222 1 1 1 11 222 1 1 1 22222 222 1 1 111 1111111111111111111111111 1 555555555 1 4444444 999999999999999999999 444444444444 333 111 222222 111 33333333333 66666666666666666666666666666666666 22222 111 22 111 1111 11 2222222222 555555555555555555555 1 111111111 44444444444444 1 1 8888888888888888888888888 44444444 1
lowQualScore : 4 8 4 0 9999 444444444 888888 4 999 111111111 66 888 0000 4 9999 00 8 66 99 4 4 0 0 5 0 5 888 1111111111 5 5 2 5 888 1 33 0 5 5 88 77 11 5 0 5 000 1 6 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11 000000000000 44444 6 99 7 44 6 77 6 1 9 6 44 66666 2 7 00 6 6 8 0 3 0 0 0 00 0 1 1 0 11 7 3 4444 5 5 5 77 111 5 5 5 1 1 77777 000 5 3 555 4444444444444444444444444 3 3 000000000 7 2 7 3333333 7 111111111111111111111 888888888888 444 111 888 7 0 555555 777 33333333333 4 66 66666666666666666666666666666666666 8 8 00000 111 44 0 11 666 1 8 8 99 0 8 1111 0 44 11 0 6666666666 3 8 8 999999999999999999999 0 999999999 6 22222222222222 44 3 6 3 0 7 3 7 4444444444444444444444444 88888888 3
lowQualScore : . . . . .... ......... ...... . ... ......... .. ... .... . .... .. . .. .. . . . . . . . ... .......... . . . . ... . .. . . . .. .. .. . . . ... . . ............................................................................................ .. ............ ..... . .. . .. . .. . . . . .. ..... . . .. . . . . . . . . .. . . . . .. . . .... . . . .. ... . . . . . ..... ... . . ... ......................... . . ......... . . . ....... . ..................... ............ ... ... ... . . ...... ... ........... . .. ................................... . . ..... ... .. . .. ... . . . .. . . .... . .. .. . .......... . . . ..................... . ......... . .............. .. . . . . . . . ......................... ........ .
lowQualScore : 4 9 4 9 4444 111111111 222222 4 888 000000000 11 888 6666 4 4444 66 9 11 11 4 4 7 1 0 4 0 888 9999999999 0 0 0 0 888 4 11 7 7 7 00 99 44 7 6 7 444 4 7 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 00 444444444444 11111 7 22 3 33 7 77 7 0 8 7 00 00000 5 5 00 7 7 0 0 2 0 0 0 22 0 0 0 0 00 3 3 0000 0 0 0 55 555 0 0 5 0 0 00000 555 5 3 333 7777777777777777777777777 7 3 777777777 3 0 3 3333333 3 777777777777777777777 777777777777 000 000 000 3 2 888888 555 55555555555 6 66 22222222222222222222222222222222222 0 0 00000 888 88 6 66 888 4 0 0 66 8 0 8888 8 00 00 8 2222222222 2 0 0 000000000000000000000 0 555555555 5 55555555555555 00 2 7 3 7 3 3 3 0000000000000000000000000 33333333 3
consensus : TGT-TTG-GGT-TGGAAGACA----ATA-----TA--GAGACAAA-ATT--TGAGCGA-TTTACCCG-AT-------T-ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGA-G----G--G-GA--TGC-ACT-A-CTGACATCGCAGATCCACTGTTTGC-CGCATTCCAG-C---G----------AC-G-TGATAAA-TCTA---ACGCGGTATTCTCGAGGAAGTATCCGTGT-TTT-GT-TTT--AT--T-TATTTTA-TTTGA-NTATTT-CAGTTTGCTTGNNNNNNNNN---------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAN--CTGANTGT----------------AT-TGAA--GATGATTAATTT----TCAAAGTAAG-CATAAT-CTTG--AAAGGGGGC-GGGGTAAA-AAGGCATC-NCGAATTACA-CCANGAATTTCGTGGTATGT-AGGG-TAATG--T--ACCGNATATCAATCAAAGT-ATGGAAAAGGGATATT-TTAAAAACACGTAAA-T-ATTTATGT-TT-TC-CCG-GC-GANGTAANCA-CAACAGTATTCTTCTTT-AAGGGAGAGAAAATGTTGTGTGCTCATCCTTCGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTTTAAAACTCGGGTTCACAATTACGNANTTCTTGAAAATCTCTACTTCATATTTTTTTTTTTTTTAGACAAA-TCG-GGTCTAAGTCC--GG-A-AAAGAG---CT------ATCGAGCATCT-TTATTAGATTAAT---TAAAATGACAAAATGAATGTAGTT-------GTTTTGTTGTTTTT------G-GGG-----TTTTTTTGGGGGGGGGGGC-------ATTGTTG-T-TGTTTCGGTTTTNATTTTTTTTTTATTTATGTGG----ATATA---TATATAT-ATGAAG----ATGAATCGGTTGA---T-------A-------T--ATA-------AT-TGA-AG-CTGAAT-----TTTTGC--TTTGAATTTATCAATA-TCTT-A-CGT-ATTTC-TANAATGTTTGCATG-CTTTCA--AAACACATAAAA--AAAATAAACA--AGAATATGTTT-CA-GCCTT-----TT------A-----AAATTCTAAA-TGA-T--AG---GGAGGGGG------GGG-----GTCTTCAATCTAGCCAAGT-GAGACGATTCTTCGT-AAAACCTGTGT-T--TTC-----AAACTCGG---ATATTTCAA--------AACTCGGACGCAT-GGGAAGACA
Reference ( family-4448 ) : TGT-TTG-GGT-TGGAAGACA----ATA-----TA--GAGACAAA-ATT--TGAGCGA-TTTACCCG-AT-------T-ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGA-G----G--G-GA--TGC-ACT-A-CTGACATCGCAGATCCACTGTTTGC-CGCATTCCAG-C---G----------AC-G-TGATAAA-TCTA---ACGCGGTATTCTCGAGGAAGTATCCGTGT-TTT-GT-TTT--AT--T-TATTTTA-TTTGA-NTATTT-CAGTTTGCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAT--CTGATTGT----------------AT-TGAA--GATGATTNATTT----TCAAAGTAAG-CATAAT-CTTG--AAAGGGGGC-GGGGTAAA-AAGGCATC-NCGAATTACA-CCANGAATTTCGTGGTATGT-AGGG-TAATG--T--ACCGNATATCAATCAAAGT-ATGGAAAAGGGATATT-TTAAAAACACGTAAA-T-ATTTATGT-TT-TC-CCG-GC-GANGTAANCA-CAACAGTATTCTTCTTT-AAGGGAGAGAAAATGTTGTGTGCTCATCCTTCGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTTTAAAACTCGGGTTCACAATTACGNANTTCTTGAAAATCTCTACTTCATATTTTTTTTTTTTTTAGACAAA-TCG-GGTCTAAGTCC--GG-A-AAAGAG---CTT-----ATCGAGCATCT-TTATTAGATTAAT---TAAAATGACAAAATGAATGTAGTT-------GTTTTGTTGTTTTT------GGGGG-----TTTTTTTGGGGGGGGGGGC-------ATTGTTG-T-TGTTTCGGTTTTNATTTTTTTTTTATTTATGTGG----ATATA---TATATAT-ATGAAG----ATGAATCGGTTGA---T-------A-------T--ATA-------AT-TGA-AG-CTGAAT-----TTTTGC--TTTGAATTTATCAATA-TCTT-A-CGT-ATTTC-TANAATGTTTGCATG-CTTTCA--AAACACATAAAA--AAAATAAACA--AGAATATGTTT-CA-GCCTT-----TT------A-----AAATTCTAAA-TGA-T--AG---GGAGGGGG------GGG-----GTCTTCAATCTAGCCAAGT-GAGACGATTCTTCGT-AAAACCTGTGT-T--TTC-----AAACTCGG---ATATTTCAA--------AACTCGGACGCAT-GGGAAGACA
gi|1 : TGT-TTG-GGT-TGAAAGATA----ATA-----AA--GAGACAAA-ATT--TGAGCGACTTTATCCA-AT-------T-ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGA-G----G--G-AA--TGC-ACTTA-CTGATATCGAAGATCCACTGTTTGC-CGCTTTCCAGGC---G----------AC-G-TGATAAAATCTA---ACGCGGTATTCTCGAGGAAGTATTCGTGT-TTTCGT-TTT--AT--C-TATTCAA-TTTGA-GTATTT-CAGTTTGCTTGNNNNNNNNN---------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNCAATCTAAT-TGTATTAACGAT-GATTTTTTTTTAAAG-AAGCCATACTGATTGAAAAAGGGGG--GGGGTTAA-AACGCATC-CCGAATTACA-CCACG-ATTTCGTGGTATGT-AGGG-TAATGGTT--A--GTATATCAAAGAACGT-AGGGTAACGATATATA-TCTAAAGCATGTAAA-T-ATTTATGTATT-TC-TCG-GC-GATGTAACCA-CAACAATATTCTTCTTTAAAAGGAGAGAAAATGTTGTGTACTCATTCTTCGCGTT-GTT-TAATAAGATGCTTG--CGAAAATATGTATTTTTAAAACT-GGGTTCACAATTACGCAATTCTTGAAAATCTCTACTTC-TATTTTTTTTTTTTTTAGACAAAGTCGCAGTCTAAGTC-------------------------ATCGAGCATTT-TAATTAGA-TA-----TAAACTGACAAAATAAATGTAGCT-------GTTTTGTTGTTTT---------GGGTTTATTTTTTTTGGGGGGG-------------TTGTTG-TGTGTTTC--TTTTCATTTATTTTTTATTGATATAATTATATATA---TATATAT-ATAAGA----ATGAATCAG--AA---T-------A-------T--ATA-------AA-TGA-AG-CTCGAT-----TTTTGC--TTTGAATTTATCAATG-TCTT---CGT-ATTTC-TAAAATGTTTGCATG-CTTTAA--AAACACATAAGA--AAAATAAACA--AGAATTTGTTT-CA-GCCTT-----TTAAAAAAA-----AAATTTTAAA-TGATT--AGCGAGGAGGGGG------GGG-----GTCTTC-ATCTAGC--AGTAGAGACAACCTTTCGTAAAAATCTTTGT-TTATTCAAACAAAACTCAGCCAATATTTCAAGATTAAAGAACTCGGACGCATAGAGAAGACA
gi|10 : T-TTG-GGT-TGAAAGATA----ATA-----AA--GAGACAAACAT-----AGCGA-TTTACC-A-AT-------T-ATAT--AA--GT---TGCAAC-G----CA-AAAAGAGATATATTGA-G----G--G-GAGATGC-ACT-A-CTGACATCGAAGATCCACTGTTAGC-CGCA-TCCAG-C---G----------ACTG-TGATAAA-TCTA---ACGCGGTATTCTCGA-AAAGTATTCATGT-TTC-G--TTT--ATGAT-TATTTTA--TTGA-G-ATTT-
gi|11 : tactgtGTGA----ATGTAAAATATATTT-TTGCAA----GCGAATTGGAGGA---T-------AAATTAAAT--ATC-------AT-CGA-AGGCTGAAT-----TTTTGC---GTGGATCTATCAAT--TCTT-ATTTT-ATTTC-TA-AATGTTTGC----TTTTCATCAAATAC-CAAAA--TCAATAAA-A--GGA--ATGTTT-CA-ttacatatttccta
gi|12 : tataaaatctaatatcttattagatttagtattggaatgactggcaaa-TTG-AGT-TGGATGACATGAAATAACATTTT--GAGCTAA---TTGCTGAGCAA-TTTGTCTG-AT-------T--TATTAAATAGC---TGCACCAG----TAGAGAAGAGATAAATTG--G----G--G-GA--T---ACT-A-CGGGCGTCGCAGATGCATTGagc
gi|15 : tcTATGT-AGGACTAATG--T--ACCGAATATCAATCAAAGT-ATGGAAGAGGGATATT-TTAAAAACACGTAAA-TAATTAATGT-TT-TC-CCATGC-GAGGAAAACA-CAAgt
gi|16 : GATATATTGA-G----G--GAGA--TGC-ACT-A-TGGACATCGCAGAACCACTATTTGT-CGCATTCCAG-C---G----------AC-G-TGATAAA-TCTA---GCGCGGTATTCT
gi|17 : TGTCTTG-GCT-TGGAAGACA----TTA-----CA--GAGACAAA-A-C--TGAGCGA-TTTACCTG-AT-------TGATAT--AATAa
gi|18 : acATGT-AAGG---ATA--TTAGCCGAATATCAATCAAAGTTATGGAAGAGGGATATT-TTAAAAACACGTAcattgtagtt
gi|2 : T-TTG-GGT-TGAAAGATA----AGA-----AA--GAGACAAA-ATT--TGGGCGA-CTTATTCA-AT-------TCATGT--AATCGT---TGCAACAG----CAGAAAAGAGATATATTGA-G----G--GTAA--TG--ACT-A-GGGGTATCGAAGATTCACTGTTTGC-CGCGTTCC-G-C---G----------AC-GTTGAT-AA-TCTA---ACGCGGTATTT---GGGAAGTATTCG-G--TTT-GTGTTT--AT--TCTATTGAA-TTGG---TATTTCCAGTTT-CTTG
gi|2 : actgtCAATTACTAATTGT-------------------TGGA--GATGTTT--TTT----TTAAAG-AAG--ATAAT-GTTG--AAAGGGGG--GGGTTAAA-AGAGCATT-CCGAATTTTATCCAAGAATTTTGTGGTATGT-AGGG-TAATGG-T--AGTG-ATATCAA---GAGT-AGGGTAAGGATATATT-CTAG---CATGTAAACT-ATTT-TGT-TTCTC-CTG-GCCGATGTAACCAGCAAC--TAT-CTTCTTT-AAGGGAGAGAAA----TGTGTG-TCATCTTTTGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTT---AACTCGGGTT-AC-ATTACGAACTTC-----AAT---TACTTCATATTTTTTTTTTTTGTAGACAAA-TCG-GGTCTAAGTCC--GGAA-AAAGAG---CT----------------T-TTATTAGAT--AT-----AAATG--AAAAT-AATGT-GTT-------TTTTTGTTTTTTTTGGGGGGGGGGG-----TTT------GGGGGGGGGT-------ATTGTTG------TTTGGTTTTGA-TTTTTTTATGTTTATGT-G----ATATA---TATATAT-G-GAAGC---ATGATTCAGTTGA---T-------T-------T--ATA-------GTATAATAA-CTGAGTGATTGTCTTGCCTTTTAAATTTTGCAGTATTCTT-A-CGT-ATTTC-T-TAATGTTTG-ATG-CTTT-A--AAACA-ATAACA--AAAATAAATACCAG-ATGTGTTTGCA-GCTTT-----TT------A-----AAAATCTAAA-TGA-TGAAG---GGGGGGGG------GGGGGAGTGTCTTCAATCTAGttgatatatctatgacaattactaattgttggagatgttttttttaaagaagataatgttgaaaggggggggttaaaagagcattccgaattttatccaagaattttgtggtatgtagggtaatggtagtgatatcaagagtagggtaaggatatattctagcatgtaaactattttgtttctcctggccgatgtaaccagcaactatcttctttaagggagagaaatgtgtgtcatcttttgcgttggttgtaataagatgcttgcccgaaaatatgtattttaactcgggttacattacgaacttcaattacttcatattttttttttttgtagacaaatcgggtctaagtccggaaaaagagcttttattagatataaatgaaaataatgtgtttttttgttttttttgggggggggggtttgggggggggtattgttgtttggttttgatttttttatgtttatgtgatatatatatatggaagcatgattcagttgatttatagtataataactgagtgattgtcttgccttttaaattttgcagtattcttacgtatttcttaatgtttgatgctttaaaacaataacaaaaataaataccagatgtgtttgcagctttttaaaaatctaaatgatgaaggggggggggggggagtgtcttcaatctag
gi|3 : actgttttgggttgaaagataagaaagagacaaaatttgggcgacttattcaattcatgtaatcgttgcaacagcagaaaagagatatattgagggtaatgactaggggtatcgaagattcactgtttgccgcgttccgcgacgttgataatctaacgcggtatttgggaagtattcggtttgtgtttattctattgaattggtatttccagtttcttgttgatatatctatgaGAATTCGTTGA---TTTATCAAA-------T--ACG-------AT-TGA-AG-CTTAAT-----TTTTGT--TTTGATCTAAGCAAT--TCTT-A-CATTATTTG-TATAATGCTTGCATGATTTTCA--ACAGATATAAAA--AAAA-------------ATATTT-CA-AGCTTACTGGTT------A-----T--TTTTAAA-AGA-T--AG---GAAGGGGT------G--------TCTCCAGCCTAGCCAAGT-GAGAGGATTCT--GT-AAA-CTTGTGTAT--TTC-----AAACTCGG---ATATTTCAA--------AATTTGGACACAT-GGGAAGACA
gi|4 : TTTATTGAGA-TTTTTA-CAT-ATTTCCTAAAATGTTTGCATG-CTTTCC--AA-CACATAAAAGAAAAATAA-CA--AGAATAT-----CAAGCCTT-----TT------TTTTTTAAATTCCAAAATGA-T--AT---G-AGGGTGTGTGTTGGG-----GTC--CAATCTAGCCAAGT-GAGACAATTCTTCGT-AAAACCTGT-------------------------ATATTTCAA--------AACTCGGACGCAT-GGGAAGACAactagtagtatgcaatcataaaacaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatcaaataaataaaaacatgcattaaatctaacattctttacattgcattacattgaagtgtacaatgtacatcttccaacgaatagattgtatgcatgtagtgattgtataaaataacaaacataatgagattcaacgagagcttggattttaatgtttacaaattaattcatcaattatcctcagattatgaagacagagtgtatgttcagatgtagcagttatcatctggtt
gi|5 : t-TTG-GGT-TGGAAGACA----ATA-----TG--GAAACAAA-AAT--TGAGCGA-TTTACCCT-AT-------TGATAT--TATTAC---TGCAACAGTGCTCAGCAAAGAGATATATTGAGG----G--G-GA--TGG-ACT-A-CCGACA--GCAGATCCACCGTTTGC-CGCAATCCAG-CCCTGGCCTGGAGCTAC-G-TGATAAA-TCTAATTATATGGTATTCTCAAGGAAGTATCCATGT-TTT-GT-TTTAAATAAT-TATTTTA-TTTAA-TTTTCT-CACTTTGagtaatatactattacgcaaccatcaaaccacactacttacattgtgccaagatgaataaagccatgcatgaacaatctaacattctacatgtatcaaattgcattatacatcttccaacgaataaattgatatttaacatgaatatataataataaacatgaagagattcaaacgagatcttgaagttaaaattgttcaacaaacaaattttaaaattaataaatcaaatattgtcagattatcgaagaccgaatttttgttcagatctatgcagttacatgtatcattttgttt
gi|5 : taCAATA-CTGATTGT----------------AT-GGAA--GATGATTA--TT----TCAAAGTA-G-CATAAT-CTTG--AA-GGGGGC-AGGGTAAA-AAGGCATC-ATGAATTACA-CCATGAATTTCGTGGTATTT-AGGA-----G--T--ACCACATAT--------AT-ATGGAGAAAGGATATTATTAAAAACTCGTAAA-T-AATTATGC-AT-TCTCCT-GC-AAAGTAAACA-CAACAGTATTCTTGTTT-AAtattgatacatgtatatctagttaataacaatactgattgtatggaagatgattatttcaaagtagcataatcttgaagggggcagggtaaaaaggcatcatgaattacaccatgaatttcgtggtatttaggagtaccacatatatatggagaaaggatattattaaaaactcgtaaataattatgcattctcctgcaaagtaaacacaacagtattcttgtttaa
gi|6 : tattgggttggaagacaatatggaaacaaaaattgagcgatttaccctattgatattattactgcaacagtgctcagcaaagagatatattgagggggatggactaccgacagcagatccaccgtttgccgcaatccagccctggcctggagctacgtgataaatctaattatatggtattctcaaggaagtatccatgttttgttttaaataattattttatttaattttctcactttgtattgatacatgtatatctagttaataa-TTG-GGT-TGGACGACA----ATA-----TA--GAGA-ATA-TTT--TTAGCGA-TTTACCCA-AT-------TTATAT--AATAGT---TGCAATAG----CAGAA--GAGATCTATTGA-GAGGGG--G-GA--TGC-ACC-A-CTTACATCGCAGATCCACTGTTTGC-CGCATTCCAG-C---G----------GC-G-TGATAAA-TTTA---ACGCGGTATCCTTGAGGAACTATTCATGT-TTT-GT-TTT--AA--T-TATTTCAGTTTGT-ATATCT-
gi|6 : tgccAG-CATAAT-CTTG---AAGGGAGCGGGGGTAAA-AAGGCATC-CCGAATTACA-CCATGGA-TTCGTGGTATGTAAGAG-TAATG--T--ACCGTATATCAATCAAAGT-ATGGAGAAAGGATATT-TTTAAAACATGTAAA-aataaaaataccgactgtatgaaagatgtagcataatcttgaagggagcgggggtaaaaaggcatcccgaattacaccatggattcgtggtatgtaagagtaatgtaccgtatatcaatcaaagtatggagaaaggatatttttaaaacatgtaaa
gi|7 : tgccttgggttggacgacaatatagagaatatttttagcgatttacccaatttatataatagttgcaatagcagaagagatctattgagaggggggatgcaccacttacatcgcagatccactgtttgccgcattccagcggcgtgataaatttaacgcggtatccttgaggaactattcatgttttgttttaattatttcagtttgtatatctaataaaaataccgactgtatgaaagatgtT-TTGAGGTATGGAGAAAA----ATA-----TATAGCGACAAA------TGAGAGA-TT-ACCCATATAAA----T-ATAT--AATAATACATGCAACAG----TAGCAAGAAGACATGTTGA-A----GAAG-GG--TGTTACT-AACTCACACCGCAGATGCACTGTTTGAGCGTATTCCAA-C---G----------AA-G-T--TGGA-TC-A---AC--------CTAGAGGAACTATCCGTGTGTTT-GC-TTT--ATA-T-AATCTTA-TTTGATTTATTTCCAGTT
gi|7 : tctAAC--CTGAATGT----------------ATCTGAA--GATGATCTAATT----TCAAAGTAA--CATAA--CTTG--AA---GGAT-GGAGTAAATCAGGCATCTACAAATTACA-CCAGG-ATTTggtatcatatgtcgtataacaaaaaacctgaatgtatctgaagatgatctaatttcaaagtaacataacttgaaggatggagtaaatcaggcatctacaaattacaccaggatttgaga
gi|8 : tcttttgaggtatggagaaaaatatatagcgacaaatgagagattacccatataaatatataataatacatgcaacagtagcaagaagacatgttgaagaagggtgttactaactcacaccgcagatgcactgtttgagcgtattccaacgaagttggatcaacctagaggaactatccgtgtgtttgctttatataatcttatttgatttatttccagttggtatcatatgtcgtataacaaaaT-TTGAGGT-TGGAGAAAA----ATA-----TA--GCGACAAA-AAT---GAGAGA-TTTACCTC-ATATAAATAT-ATAT--AATACA---TGCAACAG----TAGCAAGAAGATATGTTGA-A----GA-G-GG--TGT-ACT-A-CTCACACCGCAGATGCACTGTTTGA-CGTATTCCAA-C---G----------AA-G-TGATCAA-CCTA----------------GAGGAACTATCCGTGT-TTT-GC-TTT--AT--T-AATCTTA-TTTGA-TTATTT-CAGTTgaga
gi|8 : actcAAA--CTGAATGT----------------AC-TGAA--GATGATTAATTT------AAAGTAA--CATAAT-CTTG--AAAGGATG--GAGGTAAT-CAGGCATC-ACGAATTACA-CCAGGAATTTTGggtattcatatgtcgtataacaaaactgaatgtactgaagatgattaatttaaagtaacataatcttgaaaggatggaggtaatcaggcatcacgaattacaccaggaattttgaga
gi|9 : actctttgaggttggagaaaaatatagcgacaaaaatgagagatttacctcatataaatatatataatacatgcaacagtagcaagaagatatgttgaagagggtgtactactcacaccgcagatgcactgtttgacgtattccaacgaagtgatcaacctagaggaactatccgtgttttgctttattaatcttatttgattatttcagttggtattcatatgtcgtataacaTTTTTTTTTTTTTGAGACAAA-TCG-G-TCAAAGTCCACGG-ACAAAGAAACACTTTACAAATCGAGCATCTATTATTAGATTAATAATTAAAATGACAAAATGAATGTAGTTACAACAAGTGTTTTTG-TTTT------G------------TTTTGGGGGGGGGGGCGGGTGAAATTGTTGTT-TGTTTTGATTTTTTTTTTTTTTTTATTT---TGG----ATATA---TATTTATAATAAAGAGATATAAATCAGTTGATTTT-------A-------TCAATATTAGTATAC-TGA-AG-CTGAAT-----TTTT-T--TTTG--TTTAaga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATACAAAATCTAATACTTTATCAGGTTACATGTACACTGAGATGTGCATTCACTGAGATGTGCATCTTCCAACGAATTAAATGGTATATAAAATGATTGTAAATTAAAT
Unaligned ( gi|14 ): TGAGAAATTCTTAAATAAACTGTGTATGCAAACCTTCTAGGCATATAGGACGACAACAATATTACGCGAGACTTGAAACCACGCTATTTTACATTGTACCAAG
Alignments
lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111
lowQualScore : 111111111 111111 333333333 1111 11 22222222222 1111 22222222222222 111 00000000000000000000000000000000000000000000000000000000000000000000000000000 11111 22222 222222 111 2222222222 11 11111 11 1 1 1 1 11 1 1 11 2 2222 1 1 1 11 222 1 1 1 22222 222 1 1 111 11111111111111111111111111 1 55555555 1 4444444 999999999999999999999 444444444444 333 111 222222 111 33333333333 66666666666666666666666666666666666 22222 111 22 111 1111 11 2222222222 555555555555555555555 1 111111111 44444444444444 1 1 8888888888888888888888888 44444444 1
lowQualScore : 4 8 4 0 9999 444444444 888888 4 999 111111111 66 888 0000 9999 00 8 4 66 99 4 4 0 0 5 0 5 33333333333 66 5 5 5 0000 33 0 5 5 5 2 66666666666666 000 5 77777777777777777777777777777777777777777777777777777777777777777777777777777 44 55555 99999 1 555555 222 1 9999999999 6 77 6 1 1 6 44 66666 2 7 00 6 6 8 0 3 0 0 0 00 0 1 1 0 11 7 0 4444 5 5 5 77 111 5 5 5 1 1 77777 000 5 3 555 11111111111111111111111111 3 3 99999999 7 2 7 3333333 7 000000000000000000000 888888888888 444 111 888 7 0 555555 777 33333333333 4 66 66666666666666666666666666666666666 8 8 00000 111 44 0 11 666 1 8 8 99 0 8 1111 0 44 11 0 6666666666 3 8 8 999999999999999999999 0 999999999 6 22222222222222 44 3 6 3 0 7 3 7 4444444444444444444444444 88888888 3
lowQualScore : . . . . .... ......... ...... . ... ......... .. ... .... .... .. . . .. .. . . . . . . . ........... .. . . . .... .. . . . . . .............. ... . ............................................................................. .. ..... ..... . ...... ... . .......... . .. . . . . .. ..... . . .. . . . . . . . . .. . . . . .. . . .... . . . .. ... . . . . . ..... ... . . ... .......................... . . ........ . . . ....... . ..................... ............ ... ... ... . . ...... ... ........... . .. ................................... . . ..... ... .. . .. ... . . . .. . . .... . .. .. . .......... . . . ..................... . ......... . .............. .. . . . . . . . ......................... ........ .
lowQualScore : 4 9 4 9 4444 111111111 222222 4 888 000000000 11 888 6666 4444 66 9 4 11 11 4 4 7 1 0 4 0 88888888888 99 0 0 0 1111 11 7 7 7 7 3 66666666666666 000 7 33333333333333333333333333333333333333333333333333333333333333333333333333333 66 66666 44444 4 444444 333 7 3333333333 7 77 7 0 7 7 00 00000 5 5 00 7 7 0 0 2 0 0 0 22 0 0 0 0 00 3 0 0000 0 0 0 55 555 0 0 5 0 0 00000 555 5 3 333 77777777777777777777777777 7 3 77777777 3 0 3 3333333 3 000000000000000000000 777777777777 000 000 000 3 2 888888 555 55555555555 6 66 22222222222222222222222222222222222 0 0 00000 888 88 6 66 888 4 0 0 66 8 0 8888 8 00 00 8 2222222222 2 0 0 000000000000000000000 0 555555555 5 55555555555555 00 2 7 3 7 3 3 3 0000000000000000000000000 33333333 3
consensus : TGT-TTG-GGT-TGGAAGACA----ATA-----TA--GAGACAAA-ATT--TGAGCGA-TTTACCCG-AT-------T-ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGAG----G--G-G-A--TGC-ACT-A-CTGACATCGCAGATCCACTGTTTGC-CGCATTCCAG-C-----------G--AC-GT-GATAAA-TCTAAC---GCGGTATTCTCGAGGAAGTATCCGTGT-TT-T-GTTTTA--T--T-TA-----TTT---TA-TTTGA-NT-------------ATTT-C-AGTTT--TTGGTATTATATNTNCGNNNACNAAAANNNCGAGTNN----CAAT-CTGATTGTATTGAAGATGAT-TAATTTTCAAAGTAAGC-ATAATC-TTGAAA--GGGGGC-GGGGTAAA-AAGGCATC-NCGAATTACA-CCANGAATTTCGTGGTATGT-AGGG-TAATG--T--ACCGNATATCAATCAAAGT-ATGGAAAAGGGATATT-TTAAAAACACGTAAA-T-ATTTATGT-TT-TC-CCG-GC-GANGTAANCA-CAACAGTATTCTTCTTTAAGAGGAGAGAAAATGTTGTGTGCTCATCCTTCGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTTTAAAACTCGGGTTCACAATTACGNANTTCTTGAAAATCTCTACTTCATATTTTTTTTTTTTTTAGACAAA-TCG-GGTCTAAGTCC--GG-A-AAAGAG---CT------ATCGAGCATCT-TTATTAGAT--AT----AAAATGACAAAATGAATGTAGTT-------GTTTTGTTGTTTTT-------GGGGTTT-----TTTTGGGGGGGGGGGC-------ATTGTTG-T-TGTTTCGGTTTTNATTTTTTTTTTATTTATGTGG----ATATA---TATATAT-ATGAAG----ATGAATCGGTTGA---T-------A-------T--ATA-------AT-TGA-AG-CTGAAT-----TTTTGC--TTTGAATTTATCAATA-TCTT-A-CGT-ATTTC-TANAATGTTTGCATG-CTTTCA--AAACACATAAAA--AAAATAAACA--AGAATATGTTT-CA-GCCTT-----TT------A-----AAATTCTAAA-TGA-T--AG---GGAGGGGG------GGG-----GTCTTCAATCTAGCCAAGT-GAGACGATTCTTCGT-AAAACCTGTGT-T--TTC-----AAACTCGG---ATATTTCAA--------AACTCGGACGCAT-GGGAAGACA
Reference ( family-4448 ) : TGT-TTG-GGT-TGGAAGACA----ATA-----TA--GAGACAAA-ATT--TGAGCGA-TTTACCCG-AT-------T-ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGAG----G--G-G-A--TGC-ACT-A-CTGACATCGCAGATCCACTGTTTGC-CGCATTCCAG-C-----------G--AC-GT-GATAAA-TCTAAC---GCGGTATTCTCGAGGAAGTATCCGTGT-TT-T-GTTTTA--T--T-TA-----TTT---TA-TTTGA-NT-------------ATTT-C-AGTTTGCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAN-CTGANTGTATTGAAGATGAT-TAATTTTCAAAGTAAGC-ATAATC-TTGAAA--GGGGGC-GGGGTAAA-AAGGCATC-NCGAATTACA-CCANGAATTTCGTGGTATGT-AGGG-TAATG--T--ACCGNATATCAATCAAAGT-ATGGAAAAGGGATATT-TTAAAAACACGTAAA-T-ATTTATGT-TT-TC-CCG-GC-GANGTAANCA-CAACAGTATTCTTCTTTAAG-GGAGAGAAAATGTTGTGTGCTCATCCTTCGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTTTAAAACTCGGGTTCACAATTACGNANTTCTTGAAAATCTCTACTTCATATTTTTTTTTTTTTTAGACAAA-TCG-GGTCTAAGTCC--GG-A-AAAGAG---CT------ATCGAGCATCT-TTATTAGATTAAT---TAAAATGACAAAATGAATGTAGTT-------GTTTTGTTGTTTTT-------GGGGTTT-----TTTTGGGGGGGGGGGC-------ATTGTTG-T-TGTTTCGGTTTTNATTTTTTTTTTATTTATGTGG----ATATA---TATATAT-ATGAAG----ATGAATCGGTTGA---T-------A-------T--ATA-------AT-TGA-AG-CTGAAT-----TTTTGC--TTTGAATTTATCAATA-TCTT-A-CGT-ATTTC-TANAATGTTTGCATG-CTTTCA--AAACACATAAAA--AAAATAAACA--AGAATATGTTT-CA-GCCTT-----TT------A-----AAATTCTAAA-TGA-T--AG---GGAGGGGG------GGG-----GTCTTCAATCTAGCCAAGT-GAGACGATTCTTCGT-AAAACCTGTGT-T--TTC-----AAACTCGG---ATATTTCAA--------AACTCGGACGCAT-GGGAAGACA
gi|1 : TGT-TTG-GGT-TGAAAGATA----ATA-----AA--GAGACAAA-ATT--TGAGCGACTTTATCCA-AT-------T-ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGAG----G--G-A-A--TGC-ACTTA-CTGATATCGAAGATCCACTGTTTGC-CGCTTTCCAGGC-----------G--AC-GT-GATAAAATCTAAC---GCGGTATTCTCGAGGAAGTATTCGTGT-TT-TCGTTTTA--T--C-TATTCAATTTGAGTA-TTTCA-GTTTGCTTGNNNNNNNNNN-N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAT-CTAATTGTATTAACGATGAT-TTTTTTTTAAAG-AAGCCATACTGATTGAAAAAGGGGG--GGGGTTAA-AACGCATC-CCGAATTACA-CCACGA-TTTCGTGGTATGT-AGGG-TAATGGTT--A--GTATATCAAAGAACGT-AGGGTAACGATATATA-TCTAAAGCATGTAAA-T-ATTTATGTATT-TC-TCG-GC-GATGTAACCA-CAACAATATTCTTCTTTAAAAGGAGAGAAAATGTTGTGTACTCATTCTTCGCGTTG-TT-TAATAAGATGCTTGC--GAAAATATGTATTTTTAAAACT-GGGTTCACAATTACGCAATTCTTGAAAATCTCTACTTC-TATTTTTTTTTTTTTTAGACAAAGTCGCAGTCTAAGTC-------------------------ATCGAGCATTT-TAATTAGAT--AT----AAACTGACAAAATAAATGTAGCT-------GTTTTGTTGTTTT---------GGGTTTATTTTTTTTGGGGGGG-------------TTGTTG-TGTGTTTC--TTTTCATTTATTTTTTATTGATATAATTATATATA---TATATAT-ATAAGA----ATGAATCAG--AA---T-------A-------T--ATA-------AA-TGA-AG-CTCGAT-----TTTTGC--TTTGAATTTATCAATG-TCTT---CGT-ATTTC-TAAAATGTTTGCATG-CTTTAA--AAACACATAAGA--AAAATAAACA--AGAATTTGTTT-CA-GCCTT-----TTAAAAAAA-----AAATTTTAAA-TGATT--AGCGAGGAGGGGG------GGG-----GTCTTC-ATCTAGC--AGTAGAGACAACCTTTCGTAAAAATCTTTGT-TTATTCAAACAAAACTCAGCCAATATTTCAAGATTAAAGAACTCGGACGCATAGAGAAGACA
gi|10 : T-TTG-GGT-TGAAAGATA----ATA-----AA--GAGACAAACAT-----AGCGA-TTTACC-A-AT-------T-ATAT--AA--GT---TGCAAC-G----CA-AAAAGAGATATATTGAG----G--G-G-AGATGC-ACT-A-CTGACATCGAAGATCCACTGTTAGC-CGCA-TCCAG-C-----------G--ACTGT-GATAAA-TCTAAC---GCGGTATTCTCGA-AAAGTATTCATGT-TT-C-G-TTTA--TGAT-TA-----TTT---TA--TTGA-G--------------ATTT-
gi|11 : tactgtGTGA----ATGTAAAATATATTT-TTGCAA----GCGAATTGGAGGA---T-------AAATTAAAT--ATC-------AT-CGA-AGGCTGAAT-----TTTTGC---GTGGATCTATCAAT--TCTT-ATTTT-ATTTC-TA-AATGTTTGC----TTTTCATCAAATAC-CAAAA--TCAATAAA-A--GGA--ATGTTT-CA-ttacatatttccta
gi|12 : tataaaatctaatatcttattagatttagtattggaatgactggcaaa-TTG-AGT-TGGATGACATGAAATAACATTTT--GAGCTAA---TTGCTGAGCAA-TTTGTCTG-AT-------T--TATTAAATAGC---TGCACCAG----TAGAGAAGAGATAAATTG-G----G--G-G-A--T---ACT-A-CGGGCGTCGCAGATGCATTGagc
gi|15 : tcTATGT-AGGACTAATG--T--ACCGAATATCAATCAAAGT-ATGGAAGAGGGATATT-TTAAAAACACGTAAA-TAATTAATGT-TT-TC-CCATGC-GAGGAAAACA-CAAgt
gi|16 : GATATATTGAG----G--GAG-A--TGC-ACT-A-TGGACATCGCAGAACCACTATTTGT-CGCATTCCAG-C-----------G--AC-GT-GATAAA-TCTAGC---GCGGTATTCT
gi|17 : TGTCTTG-GCT-TGGAAGACA----TTA-----CA--GAGACAAA-A-C--TGAGCGA-TTTACCTG-AT-------TGATAT--AATAa
gi|18 : acATGT-AAGG---ATA--TTAGCCGAATATCAATCAAAGTTATGGAAGAGGGATATT-TTAAAAACACGTAcattgtagtt
gi|2 : T-TTG-GGT-TGAAAGATA----AGA-----AA--GAGACAAA-ATT--TGGGCGA-CTTATTCA-AT-------TCATGT--AATCGT---TGCAACAG----CAGAAAAGAGATATATTGAG----G--GTA-A--TG--ACT-A-GGGGTATCGAAGATTCACTGTTTGC-CGCGTTCC-G-C-----------G--AC-GTTGATAA--TCTAAC---GCGGTATTT---GGGAAGTATTCG-GT-TTGT-GTTT-A--T--TCTA-----TTG---AA-TTGG---T-------------ATTT-CCAGTTT-CTTGTTGATATATCTATGACAATTA----------------------CTAATTGT--TGGAGATGTT-T--TTTTTAAAG-AAG--ATAATG-TTGAAA--GGGGG--GGGTTAAA-AGAGCATT-CCGAATTTTATCCAAGAATTTTGTGGTATGT-AGGG-TAATGG-T--AGTG-ATATCAA---GAGT-AGGGTAAGGATATATT-CTAG---CATGTAAACT-ATTT-TGT-TTCTC-CTG-GCCGATGTAACCAGCAAC--TAT-CTTCTTTAAG-GGAGAGAAA----TGTGTG-TCATCTTTTGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTT---AACTCGGGTT-AC-ATTACGAACTTC-----AAT---TACTTCATATTTTTTTTTTTTGTAGACAAA-TCG-GGTCTAAGTCC--GGAA-AAAGAG---CT----------------T-TTATTAGAT--AT-----AAATG--AAAAT-AATGT-GTT-------TTTTTGTTTTTTTTGGGGGGGGGGGTTT-----------GGGGGGGGGT-------ATTGTTG------TTTGGTTTTGA-TTTTTTTATGTTTATGT-G----ATATA---TATATAT-G-GAAGC---ATGATTCAGTTGA---T-------T-------T--ATA-------GTATAATAA-CTGAGTGATTGTCTTGCCTTTTAAATTTTGCAGTATTCTT-A-CGT-ATTTC-T-TAATGTTTG-ATG-CTTT-A--AAACA-ATAACA--AAAATAAATACCAG-ATGTGTTTGCA-GCTTT-----TT------A-----AAAATCTAAA-TGA-TGAAG---GGGGGGGG------GGGGGAGTGTCTTCAATCTAG
gi|3 : actgtGAATTCGTTGA---TTTATCAAA-------T--ACG-------AT-TGA-AG-CTTAAT-----TTTTGT--TTTGATCTAAGCAAT--TCTT-A-CATTATTTG-TATAATGCTTGCATGATTTTCA--ACAGATATAAAA--AAAA-------------ATATTT-CA-AGCTTACTGGTT------A-----T--TTTTAAA-AGA-T--AG---GAAGGGGT------G--------TCTCCAGCCTAGCCAAGT-GAGAGGATTCT--GT-AAA-CTTGTGTAT--TTC-----AAACTCGG---ATATTTCAA--------AATTTGGACACAT-GGGAAGACA
gi|4 : TTTATTGAGA-TTTTTA-CAT-ATTTCCTAAAATGTTTGCATG-CTTTCC--AA-CACATAAAAGAAAAATAA-CA--AGAATAT-----CAAGCCTT-----TT------TTTTTTAAATTCCAAAATGA-T--AT---G-AGGGTGTGTGTTGGG-----GTC--CAATCTAGCCAAGT-GAGACAATTCTTCGT-AAAACCTGT-------------------------ATATTTCAA--------AACTCGGACGCAT-GGGAAGACAactagtagtatgcaatcataaaacaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatcaaataaataaaaacatgcattaaatctaacattctttacattgcattacattgaagtgtacaatgtacatcttccaacgaatagattgtatgcatgtagtgattgtataaaataacaaacataatgagattcaacgagagcttggattttaatgtttacaaattaattcatcaattatcctcagattatgaagacagagtgtatgttcagatgtagcagttatcatctggtt
gi|5 : t-TTG-GGT-TGGAAGACA----ATA-----TG--GAAACAAA-AAT--TGAGCGA-TTTACCCT-AT-------TGATAT--TATTAC---TGCAACAGTGCTCAGCAAAGAGATATATTGAG----G--G-GGA--TGG-ACT-A-CCGACA--GCAGATCCACCGTTTGC-CGCAATCCAG-CCCTGGCCTGGAGCTAC-GT-GATAAA-TCTAATTATATGGTATTCTCAAGGAAGTATCCATGT-TT-T-GTTTTAAATAAT-TA-----TTT---TA-TTTAA-TT-------------TTCT-C-ACTTTG--------------TATTGATACATGTATATCTAGTTAATAACAATACTGATTGTATGGAAGATGAT-TA--TTTCAAAGTA-GC-ATAATC-TTGAA---GGGGGC-AGGGTAAA-AAGGCATC-ATGAATTACA-CCATGAATTTCGTGGTATTT-AGGA-----G--T--ACCACATAT--------AT-ATGGAGAAAGGATATTATTAAAAACTCGTAAA-T-AATTATGC-AT-TCTCCT-GC-AAAGTAAACA-CAACAGTATTCTTGTTTAAagtaatatactattacgcaaccatcaaaccacactacttacattgtgccaagatgaataaagccatgcatgaacaatctaacattctacatgtatcaaattgcattatacatcttccaacgaataaattgatatttaacatgaatatataataataaacatgaagagattcaaacgagatcttgaagttaaaattgttcaacaaacaaattttaaaattaataaatcaaatattgtcagattatcgaagaccgaatttttgttcagatctatgcagttacatgtatcattttgttt
gi|6 : ta-TTG-GGT-TGGACGACA----ATA-----TA--GAGA-ATA-TTT--TTAGCGA-TTTACCCA-AT-------TTATAT--AATAGT---TGCAATAG----CAGAA--GAGATCTATTGAGAGGGG--G-G-A--TGC-ACC-A-CTTACATCGCAGATCCACTGTTTGC-CGCATTCCAG-C-----------G--GC-GT-GATAAA-TTTAAC---GCGGTATCCTTGAGGAACTATTCATGT-TT-T-GTTTTA--A--T-TA-----TTT---CAGTTTGT-AT-------------ATCT-
gi|6 : tgccAGC-ATAATC-TTG-AA--GGGAGCGGGGGTAAA-AAGGCATC-CCGAATTACA-CCATGGA-TTCGTGGTATGTAAGAG-TAATG--T--ACCGTATATCAATCAAAGT-ATGGAGAAAGGATATT-TTTAAAACATGTAAA-aataaaaataccgactgtatgaaagatgtagcataatcttgaagggagcgggggtaaaaaggcatcccgaattacaccatggattcgtggtatgtaagagtaatgtaccgtatatcaatcaaagtatggagaaaggatatttttaaaacatgtaaa
gi|7 : tgccttgggttggacgacaatatagagaatatttttagcgatttacccaatttatataatagttgcaatagcagaagagatctattgagaggggggatgcaccacttacatcgcagatccactgtttgccgcattccagcggcgtgataaatttaacgcggtatccttgaggaactattcatgttttgttttaattatttcagtttgtatatctaataaaaataccgactgtatgaaagatgtT-TTGAGGTATGGAGAAAA----ATA-----TATAGCGACAAA------TGAGAGA-TT-ACCCATATAAA----T-ATAT--AATAATACATGCAACAG----TAGCAAGAAGACATGTTGAA----GAAG-G-G--TGTTACT-AACTCACACCGCAGATGCACTGTTTGAGCGTATTCCAA-C-----------G--AA-GT---TGGA-TC-AAC-----------CTAGAGGAACTATCCGTGTGTT-T-GCTTTA--TA-T-AA-----TCT---TA-TTTGATTT-------------ATTTCC-AG-----TTGGTATCATATGTCGTATAACAAAAAACCTGAATGT------AT-CTG---------AAGATGATCTAA-TTTCAAAGTAA-C-ATAA-C-TTGAA-----GGAT-GGAGTAAATCAGGCATCTACAAATTACA-CCAGG-ATTT
gi|8 : tctT-TTGAGGT-TGGAGAAAA----ATA-----TA--GCGACAAA-AAT---GAGAGA-TTTACCTC-ATATAAATAT-ATAT--AATACA---TGCAACAG----TAGCAAGAAGATATGTTGAA----GA-G-G-G--TGT-ACT-A-CTCACACCGCAGATGCACTGTTTGA-CGTATTCCAA-C-----------G--AA-GT-GATCAA-CCTA----------------GAGGAACTATCCGTGT-TT-T-GCTTTA--T--T-AA-----TCT---TA-TTTGA-TT-------------ATTT-C-AG-----TTGGTATTCATATGTCGTATAACAAAACTGAATGTACTG---AAG-ATGATTA-ATTTAAAGTAACATAATCTTGAAAGGA------------TGGA------------GGTAAT-CAGGCATC-ACGAATTACA-CCAGGAATTTTGgaga
gi|9 : actcTTTTTTTTTTTTTGAGACAAA-TCG-G-TCAAAGTCCACGG-ACAAAGAAACACTTTACAAATCGAGCATCTATTATTAGATTAATAATTAAAATGACAAAATGAATGTAGTTACAACAAGTGTTTTTG-TTTT-------G-----------TTTTGGGGGGGGGGGCGGGTGAAATTGTTGTT-TGTTTTGATTTTTTTTTTTTTTTTATTT---TGG----ATATA---TATTTATAATAAAGAGATATAAATCAGTTGATTTT-------A-------TCAATATTAGTATAC-TGA-AG-CTGAAT-----TTTT-T--TTTG--TTTAaga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATACAAAATCTAATACTTTATCAGGTTACATGTACACTGAGATGTGCATTCACTGAGATGTGCATCTTCCAACGAATTAAATGGTATATAAAATGATTGTAAATTAAAT
Unaligned ( gi|14 ): TGAGAAATTCTTAAATAAACTGTGTATGCAAACCTTCTAGGCATATAGGACGACAACAATATTACGCGAGACTTGAAACCACGCTATTTTACATTGTACCAAG
Alignments
lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111
lowQualScore : 111111111 111111 333333333 1111 11 22222222222 1111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 33333 111111 111 22 11 11111 11 1 1 1 1 11 1 1 11 1 2222 1 1 1 11 222 1 1 1 22222 222 1 1 111 11111111111111111111111111 1 333333333 1 4444444 999999999999999999999 444444444444 333 111 222222 111 33333333333 66666666666666666666666666666666666 22222 111 22 111 1111 11 2222222222 555555555555555555555 1 111111111 44444444444444 1 1 8888888888888888888888888 44444444 1
lowQualScore : 4 8 4 0 9999 444444444 888888 4 999 111111111 66 888 0000 9999 00 8 4 66 99 4 4 0 0 5 0 5 33333333333 66 5 5 5 0000 33 0 5 5 5 2 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 2 6 3 22222 66 777777 6 666 44 6 77 6 1 1 6 44 66666 2 7 00 6 6 8 0 3 0 0 0 00 0 1 1 0 11 7 5 4444 5 5 5 77 111 5 5 5 1 1 77777 000 5 3 555 11111111111111111111111111 3 3 666666666 7 2 7 3333333 7 000000000000000000000 888888888888 444 111 888 7 0 555555 777 33333333333 4 66 66666666666666666666666666666666666 8 8 00000 111 44 0 11 666 1 8 8 99 0 8 1111 0 44 11 0 6666666666 3 8 8 999999999999999999999 0 999999999 6 22222222222222 44 3 6 3 0 7 3 7 4444444444444444444444444 88888888 3
lowQualScore : . . . . .... ......... ...... . ... ......... .. ... .... .... .. . . .. .. . . . . . . . ........... .. . . . .... .. . . . . . .......................................................................................................... . . . ..... .. ...... . ... .. . .. . . . . .. ..... . . .. . . . . . . . . .. . . . . .. . . .... . . . .. ... . . . . . ..... ... . . ... .......................... . . ......... . . . ....... . ..................... ............ ... ... ... . . ...... ... ........... . .. ................................... . . ..... ... .. . .. ... . . . .. . . .... . .. .. . .......... . . . ..................... . ......... . .............. .. . . . . . . . ......................... ........ .
lowQualScore : 4 9 4 9 4444 111111111 222222 4 888 000000000 11 888 6666 4444 66 9 4 11 11 4 4 7 1 0 4 0 88888888888 99 0 0 0 1111 11 7 7 7 7 3 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 2 7 5 00000 88 222222 7 555 33 7 77 7 0 7 7 00 00000 5 5 00 7 7 0 0 2 0 0 0 22 0 0 0 0 00 3 5 0000 0 0 0 55 555 0 0 5 0 0 00000 555 5 3 333 77777777777777777777777777 7 3 000000000 3 0 3 3333333 3 000000000000000000000 777777777777 000 000 000 3 2 888888 555 55555555555 6 66 22222222222222222222222222222222222 0 0 00000 888 88 6 66 888 4 0 0 66 8 0 8888 8 00 00 8 2222222222 2 0 0 000000000000000000000 0 555555555 5 55555555555555 00 2 7 3 7 3 3 3 0000000000000000000000000 33333333 3
consensus : TGT-TTG-GGT-TGGAAGACA----ATA-----TA--GAGACAAA-ATT--TGAGCGA-TTTACCCG-AT-------T-ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGAG----G--G-G-A--TGC-ACT-A-CTGACATCGCAGATCCACTGTTTGC-CGCATTCCAG-C-----------G--AC-GT-GATAAA-TCTAAC---GCGGTATTCTCGAGGAAGTATCCGTGT-TT-T-GTTT----TA--T--T---------TA-TTTTA-TTTG-------------ATT-ATTTC-AGTTT-TTGGTATT-ATATNT-CGTATATCAAAATA---------AAT-CTGANTGTAT-TGAAGATGAT-TA-TTTTCAAAGTAAGC-ATAATC-TTGAAA--GGGGGC-GGGGTAAA-AAGGCATC-NCGAATTACA-CCANGAATTTCGTGGTATGT-AGGG-TAATG--T--ACCGNATATCAATCAAAGT-ATGGAAAAGGGATATT-TTAAAAACACGTAAA-T-ATTTATGT-TT-TC-CCG-GC-GANGTAANCA-CAACAGTATTCTTCTTTAAGAGGAGAGAAAATGTTGTGTGCTCATCCTTCGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTTTAAAACTCGGGTTCACAATTACGNANTTCTTGAAAATCTCTACTTCATATTTTTTTTTTTTTTAGACAAA-TCG-GGTCTAAGTCC--GG-A-AAAGAG---CT------ATCGAGCATCT-TTATTAGAT-----AT-AAAATGACAAAATGAATGTAGTT-------GTTTTGTTGTTTTT-------GGGGTTT-----TTTTGGGGGGGGGGGC-------ATTGTTG-T-TGTTTCGGTTTTNATTTTTTTTTTATTTATGTGG----ATATA---TATATAT-ATGAAG----ATGAATCGGTTGA---T-------A-------T--ATA-------AT-TGA-AG-CTGAAT-----TTTTGC--TTTGAATTTATCAATA-TCTT-A-CGT-ATTTC-TANAATGTTTGCATG-CTTTCA--AAACACATAAAA--AAAATAAACA--AGAATATGTTT-CA-GCCTT-----TT------A-----AAATTCTAAA-TGA-T--AG---GGAGGGGG------GGG-----GTCTTCAATCTAGCCAAGT-GAGACGATTCTTCGT-AAAACCTGTGT-T--TTC-----AAACTCGG---ATATTTCAA--------AACTCGGACGCAT-GGGAAGACA
Reference ( family-4448 ) : TGT-TTG-GGT-TGGAAGACA----ATA-----TA--GAGACAAA-ATT--TGAGCGA-TTTACCCG-AT-------T-ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGAG----G--G-G-A--TGC-ACT-A-CTGACATCGCAGATCCACTGTTTGC-CGCATTCCAG-C-----------G--AC-GT-GATAAA-TCTAAC---GCGGTATTCTCGAGGAAGTATCCGTGT-TT-T-GTTT----TA--T--T---------TA-TTTTA-TTTG-------------ANT-ATTTC-AGTTT-TTGGTATT-ATATNTNCGNNNACNAAAANNNCGAGTNNCAAT-CTGATTGTAT-TGAAGATGAT-TAATTTTCAAAGTAAGC-ATAATC-TTGAAA--GGGGGC-GGGGTAAA-AAGGCATC-NCGAATTACA-CCANGAATTTCGTGGTATGT-AGGG-TAATG--T--ACCGNATATCAATCAAAGT-ATGGAAAAGGGATATT-TTAAAAACACGTAAA-T-ATTTATGT-TT-TC-CCG-GC-GANGTAANCA-CAACAGTATTCTTCTTTAAGAGGAGAGAAAATGTTGTGTGCTCATCCTTCGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTTTAAAACTCGGGTTCACAATTACGNANTTCTTGAAAATCTCTACTTCATATTTTTTTTTTTTTTAGACAAA-TCG-GGTCTAAGTCC--GG-A-AAAGAG---CT------ATCGAGCATCT-TTATTAGAT-----AT-AAAATGACAAAATGAATGTAGTT-------GTTTTGTTGTTTTT-------GGGGTTT-----TTTTGGGGGGGGGGGC-------ATTGTTG-T-TGTTTCGGTTTTNATTTTTTTTTTATTTATGTGG----ATATA---TATATAT-ATGAAG----ATGAATCGGTTGA---T-------A-------T--ATA-------AT-TGA-AG-CTGAAT-----TTTTGC--TTTGAATTTATCAATA-TCTT-A-CGT-ATTTC-TANAATGTTTGCATG-CTTTCA--AAACACATAAAA--AAAATAAACA--AGAATATGTTT-CA-GCCTT-----TT------A-----AAATTCTAAA-TGA-T--AG---GGAGGGGG------GGG-----GTCTTCAATCTAGCCAAGT-GAGACGATTCTTCGT-AAAACCTGTGT-T--TTC-----AAACTCGG---ATATTTCAA--------AACTCGGACGCAT-GGGAAGACA
gi|1 : TGT-TTG-GGT-TGAAAGATA----ATA-----AA--GAGACAAA-ATT--TGAGCGACTTTATCCA-AT-------T-ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGAG----G--G-A-A--TGC-ACTTA-CTGATATCGAAGATCCACTGTTTGC-CGCTTTCCAGGC-----------G--AC-GT-GATAAAATCTAAC---GCGGTATTCTCGAGGAAGTATTCGTGT-TT-TCGTTTTATCTA--T--TCAATTTGAGTA-TTTCAGTTTGCTTGNNNNNNNNNNNN-NNNNN-NNNNN-NNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAT-CTAATTGTAT-TAACGATGAT-TTTTTTTTAAAG-AAGCCATACTGATTGAAAAAGGGGG--GGGGTTAA-AACGCATC-CCGAATTACA-CCACGA-TTTCGTGGTATGT-AGGG-TAATGGTT--A--GTATATCAAAGAACGT-AGGGTAACGATATATA-TCTAAAGCATGTAAA-T-ATTTATGTATT-TC-TCG-GC-GATGTAACCA-CAACAATATTCTTCTTTAAAAGGAGAGAAAATGTTGTGTACTCATTCTTCGCGTTG-TT-TAATAAGATGCTTGC--GAAAATATGTATTTTTAAAACT-GGGTTCACAATTACGCAATTCTTGAAAATCTCTACTTC-TATTTTTTTTTTTTTTAGACAAAGTCGCAGTCTAAGTC-------------------------ATCGAGCATTT-TAATTAGAT-----AT-AAACTGACAAAATAAATGTAGCT-------GTTTTGTTGTTTT---------GGGTTTATTTTTTTTGGGGGGG-------------TTGTTG-TGTGTTTC--TTTTCATTTATTTTTTATTGATATAATTATATATA---TATATAT-ATAAGA----ATGAATCAG--AA---T-------A-------T--ATA-------AA-TGA-AG-CTCGAT-----TTTTGC--TTTGAATTTATCAATG-TCTT---CGT-ATTTC-TAAAATGTTTGCATG-CTTTAA--AAACACATAAGA--AAAATAAACA--AGAATTTGTTT-CA-GCCTT-----TTAAAAAAA-----AAATTTTAAA-TGATT--AGCGAGGAGGGGG------GGG-----GTCTTC-ATCTAGC--AGTAGAGACAACCTTTCGTAAAAATCTTTGT-TTATTCAAACAAAACTCAGCCAATATTTCAAGATTAAAGAACTCGGACGCATAGAGAAGACA
gi|10 : T-TTG-GGT-TGAAAGATA----ATA-----AA--GAGACAAACAT-----AGCGA-TTTACC-A-AT-------T-ATAT--AA--GT---TGCAAC-G----CA-AAAAGAGATATATTGAG----G--G-G-AGATGC-ACT-A-CTGACATCGAAGATCCACTGTTAGC-CGCA-TCCAG-C-----------G--ACTGT-GATAAA-TCTAAC---GCGGTATTCTCGA-AAAGTATTCATGT-TT-C-G-TT----TA--TGAT---------TA-TTTTA--TTG-------------AG--ATTT
gi|11 : tactgtGTGA----ATGTAAAATATATTT-TTGCAA----GCGAATTGGAGGA---T-------AAATTAAAT--ATC-------AT-CGA-AGGCTGAAT-----TTTTGC---GTGGATCTATCAAT--TCTT-ATTTT-ATTTC-TA-AATGTTTGC----TTTTCATCAAATAC-CAAAA--TCAATAAA-A--GGA--ATGTTT-CA-ttacatatttccta
gi|12 : tataaaatctaatatcttattagatttagtattggaatgactggcaaa-TTG-AGT-TGGATGACATGAAATAACATTTT--GAGCTAA---TTGCTGAGCAA-TTTGTCTG-AT-------T--TATTAAATAGC---TGCACCAG----TAGAGAAGAGATAAATTG-G----G--G-G-A--T---ACT-A-CGGGCGTCGCAGATGCATTGagc
gi|15 : tcTATGT-AGGACTAATG--T--ACCGAATATCAATCAAAGT-ATGGAAGAGGGATATT-TTAAAAACACGTAAA-TAATTAATGT-TT-TC-CCATGC-GAGGAAAACA-CAAgt
gi|16 : GATATATTGAG----G--GAG-A--TGC-ACT-A-TGGACATCGCAGAACCACTATTTGT-CGCATTCCAG-C-----------G--AC-GT-GATAAA-TCTAGC---GCGGTATTCT
gi|17 : TGTCTTG-GCT-TGGAAGACA----TTA-----CA--GAGACAAA-A-C--TGAGCGA-TTTACCTG-AT-------TGATAT--AATAa
gi|18 : acATGT-AAGG---ATA--TTAGCCGAATATCAATCAAAGTTATGGAAGAGGGATATT-TTAAAAACACGTAcattgtagtt
gi|2 : T-TTG-GGT-TGAAAGATA----AGA-----AA--GAGACAAA-ATT--TGGGCGA-CTTATTCA-AT-------TCATGT--AATCGT---TGCAACAG----CAGAAAAGAGATATATTGAG----G--GTA-A--TG--ACT-A-GGGGTATCGAAGATTCACTGTTTGC-CGCGTTCC-G-C-----------G--AC-GTTGATAA--TCTAAC---GCGGTATTT---GGGAAGTATTCG-GT-TTGT-GTTT-----A--T--TC--------TA-TTGAA-TTGG---------------T-ATTTCCAGTTTCTTGTTGAT-ATATCTATGACAATTA------------------CTAATTGT---TGGAGATGTT-T--TTTTTAAAG-AAG--ATAATG-TTGAAA--GGGGG--GGGTTAAA-AGAGCATT-CCGAATTTTATCCAAGAATTTTGTGGTATGT-AGGG-TAATGG-T--AGTG-ATATCAA---GAGT-AGGGTAAGGATATATT-CTAG---CATGTAAACT-ATTT-TGT-TTCTC-CTG-GCCGATGTAACCAGCAAC--TAT-CTTCTTTAAG-GGAGAGAAA----TGTGTG-TCATCTTTTGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTT---AACTCGGGTT-AC-ATTACGAACTTC-----AAT---TACTTCATATTTTTTTTTTTTGTAGACAAA-TCG-GGTCTAAGTCC--GGAA-AAAGAG---CT----------------T-TTATTAGAT-----AT--AAATG--AAAAT-AATGT-GTT-------TTTTTGTTTTTTTTGGGGGGGGGGGTTT-----------GGGGGGGGGT-------ATTGTTG------TTTGGTTTTGA-TTTTTTTATGTTTATGT-G----ATATA---TATATAT-G-GAAGC---ATGATTCAGTTGA---T-------T-------T--ATA-------GTATAATAA-CTGAGTGATTGTCTTGCCTTTTAAATTTTGCAGTATTCTT-A-CGT-ATTTC-T-TAATGTTTG-ATG-CTTT-A--AAACA-ATAACA--AAAATAAATACCAG-ATGTGTTTGCA-GCTTT-----TT------A-----AAAATCTAAA-TGA-TGAAG---GGGGGGGG------GGGGGAGTGTCTTCAATCTAG
gi|3 : actgtGAATTCGTTGA---TTTATCAAA-------T--ACG-------AT-TGA-AG-CTTAAT-----TTTTGT--TTTGATCTAAGCAAT--TCTT-A-CATTATTTG-TATAATGCTTGCATGATTTTCA--ACAGATATAAAA--AAAA-------------ATATTT-CA-AGCTTACTGGTT------A-----T--TTTTAAA-AGA-T--AG---GAAGGGGT------G--------TCTCCAGCCTAGCCAAGT-GAGAGGATTCT--GT-AAA-CTTGTGTAT--TTC-----AAACTCGG---ATATTTCAA--------AATTTGGACACAT-GGGAAGACA
gi|4 : TTTATTGAGA-TTTTTA-CAT-ATTTCCTAAAATGTTTGCATG-CTTTCC--AA-CACATAAAAGAAAAATAA-CA--AGAATAT-----CAAGCCTT-----TT------TTTTTTAAATTCCAAAATGA-T--AT---G-AGGGTGTGTGTTGGG-----GTC--CAATCTAGCCAAGT-GAGACAATTCTTCGT-AAAACCTGT-------------------------ATATTTCAA--------AACTCGGACGCAT-GGGAAGACAactagtagtatgcaatcataaaacaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatcaaataaataaaaacatgcattaaatctaacattctttacattgcattacattgaagtgtacaatgtacatcttccaacgaatagattgtatgcatgtagtgattgtataaaataacaaacataatgagattcaacgagagcttggattttaatgtttacaaattaattcatcaattatcctcagattatgaagacagagtgtatgttcagatgtagcagttatcatctggtt
gi|5 : t-TTG-GGT-TGGAAGACA----ATA-----TG--GAAACAAA-AAT--TGAGCGA-TTTACCCT-AT-------TGATAT--TATTAC---TGCAACAGTGCTCAGCAAAGAGATATATTGAG----G--G-GGA--TGG-ACT-A-CCGACA--GCAGATCCACCGTTTGC-CGCAATCCAG-CCCTGGCCTGGAGCTAC-GT-GATAAA-TCTAATTATATGGTATTCTCAAGGAAGTATCCATGT-TT-T-GTTT----TAAATAAT---------TA-TTTTA-TTTA-------------ATT-TTCTC-ACTTT----GTATTGATACAT--GTATATC----TAGTTAATAACAATACTGATTGTAT-GGAAGATGAT-TA--TTTCAAAGTA-GC-ATAATC-TTGAA---GGGGGC-AGGGTAAA-AAGGCATC-ATGAATTACA-CCATGAATTTCGTGGTATTT-AGGA-----G--T--ACCACATAT--------AT-ATGGAGAAAGGATATTATTAAAAACTCGTAAA-T-AATTATGC-AT-TCTCCT-GC-AAAGTAAACA-CAACAGTATTCTTGTTTAAagtaatatactattacgcaaccatcaaaccacactacttacattgtgccaagatgaataaagccatgcatgaacaatctaacattctacatgtatcaaattgcattatacatcttccaacgaataaattgatatttaacatgaatatataataataaacatgaagagattcaaacgagatcttgaagttaaaattgttcaacaaacaaattttaaaattaataaatcaaatattgtcagattatcgaagaccgaatttttgttcagatctatgcagttacatgtatcattttgttt
gi|6 : ta-TTG-GGT-TGGACGACA----ATA-----TA--GAGA-ATA-TTT--TTAGCGA-TTTACCCA-AT-------TTATAT--AATAGT---TGCAATAG----CAGAA--GAGATCTATTGAGAGGGG--G-G-A--TGC-ACC-A-CTTACATCGCAGATCCACTGTTTGC-CGCATTCCAG-C-----------G--GC-GT-GATAAA-TTTAAC---GCGGTATCCTTGAGGAACTATTCATGT-TT-T-GTTT----TA-----------------------------------------ATT-ATTTC-AG--T-TTG----T-ATATCT-----AATAAAAATACC-------------GACTGTAT-GAAAGATG-T---------------AGC-ATAATC-TTG-AA--GGGAGCGGGGGTAAA-AAGGCATC-CCGAATTACA-CCATGGA-TTCGTGGTATGTAAGAG-TAATG--T--ACCGTATATCAATCAAAGT-ATGGAGAAAGGATATT-TTTAAAACATGTAAA-
gi|7 : tgccT-TTGAGGTATGGAGAAAA----ATA-----TATAGCGACAAA------TGAGAGA-TT-ACCCATATAAA----T-ATAT--AATAATACATGCAACAG----TAGCAAGAAGACATGTTGAA----GAAG-G-G--TGTTACT-AACTCACACCGCAGATGCACTGTTTGAGCGTATTCCAA-C-----------G--AA-GT---TGGA-TC-AAC-----------CTAGAGGAACTATCCGTGTGTT-T-GCTT----TA--T--A---------TAATCTTA-TTTG-------------ATTTATTTCCAGTT----GGTATC-ATATGT-CGTATAACAAAA-----------AAC-CTGAATGTATCTGAAGATGATCTAA-TTTCAAAGTAA-C-ATAA-C-TTGAA-----GGAT-GGAGTAAATCAGGCATCTACAAATTACA-CCAGG-ATTT
gi|8 : tctT-TTGAGGT-TGGAGAAAA----ATA-----TA--GCGACAAA-AAT---GAGAGA-TTTACCTC-ATATAAATAT-ATAT--AATACA---TGCAACAG----TAGCAAGAAGATATGTTGAA----GA-G-G-G--TGT-ACT-A-CTCACACCGCAGATGCACTGTTTGA-CGTATTCCAA-C-----------G--AA-GT-GATCAA-CCTA----------------GAGGAACTATCCGTGT-TT-T-GCTT----TA--T--T---------AA-TCTTA-TTTG-------------ATT-ATTTC-AG----TTGGTATTCATATGT-CGTATAACAAAA---------------CTGAATGTAC-TGAAGATGAT-TAATTT--AAAGTAA-C-ATAATC-TTGAAA--GGATG--GAGGTAAT-CAGGCATC-ACGAATTACA-CCAGGAATTTTGgaga
gi|9 : actcTTTTTTTTTTTTTGAGACAAA-TCG-G-TCAAAGTCCACGG-ACAAAGAAACACTTTACAAATCGAGCATCTATTATTAGATTAATAATTAAAATGACAAAATGAATGTAGTTACAACAAGTGTTTTTG-TTTT-------G-----------TTTTGGGGGGGGGGGCGGGTGAAATTGTTGTT-TGTTTTGATTTTTTTTTTTTTTTTATTT---TGG----ATATA---TATTTATAATAAAGAGATATAAATCAGTTGATTTT-------A-------TCAATATTAGTATAC-TGA-AG-CTGAAT-----TTTT-T--TTTG--TTTAaga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATACAAAATCTAATACTTTATCAGGTTACATGTACACTGAGATGTGCATTCACTGAGATGTGCATCTTCCAACGAATTAAATGGTATATAAAATGATTGTAAATTAAAT
Unaligned ( gi|14 ): TGAGAAATTCTTAAATAAACTGTGTATGCAAACCTTCTAGGCATATAGGACGACAACAATATTACGCGAGACTTGAAACCACGCTATTTTACATTGTACCAAG
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 111111111 111111 333333333 1111 11 22222222222 1111 222222 111 33333333333 1 111 44444444 222222222 111111 111 22 11 1 1 1 1 11 1 1 11 1 2222 1 1 1 11 222 1 1 1 22222 222 1 1 111 11111111111111111111111111 1 333333333 1 4444444 999999999999999999999 444444444444 333 111 222222 111 33333333333 66666666666666666666666666666666666 22222 111 22 111 1111 11 2222222222 555555555555555555555 1 111111111 44444444444444 1 1 8888888888888888888888888 44444444 1
lowQualScore : 4 8 4 0 9999 444444444 888888 4 999 111111111 66 888 0000 9999 00 8 4 66 99 4 4 0 0 5 0 5 33333333333 66 5 5 77 0000 33 0 5 5 2 5 111111 5 111 6 6 6 66666666666 1 0 0 1 444 88888888 1 6 7 000000000 777777 6 666 44 6 77 6 1 1 6 44 6 99999 2 7 999 6 6 7 8 0 3 0 0 0 00 0 1 1 0 11 7 5 4444 5 5 5 77 111 5 5 5 1 1 77777 000 5 3 555 11111111111111111111111111 3 3 666666666 7 2 7 3333333 7 000000000000000000000 888888888888 444 111 888 7 0 555555 777 33333333333 4 66 66666666666666666666666666666666666 8 8 00000 111 44 0 11 666 1 8 8 99 0 8 1111 0 44 11 0 6666666666 3 8 8 999999999999999999999 0 999999999 6 22222222222222 44 3 6 3 0 7 3 7 4444444444444444444444444 88888888 3
lowQualScore : . . . . .... ......... ...... . ... ......... .. ... .... .... .. . . .. .. . . . . . . . ........... .. . . .. .... .. . . . . . ...... . ... . . . ........... . . . . ... ........ . . . ......... ...... . ... .. . .. . . . . .. . ..... . . ... . . . . . . . . . .. . . . . .. . . .... . . . .. ... . . . . . ..... ... . . ... .......................... . . ......... . . . ....... . ..................... ............ ... ... ... . . ...... ... ........... . .. ................................... . . ..... ... .. . .. ... . . . .. . . .... . .. .. . .......... . . . ..................... . ......... . .............. .. . . . . . . . ......................... ........ .
lowQualScore : 4 9 4 9 4444 111111111 222222 4 888 000000000 11 888 6666 4444 66 9 4 11 11 4 4 7 1 0 4 0 88888888888 99 0 0 00 1111 11 7 7 7 3 7 999999 7 777 7 7 7 33333333333 0 0 8 4 000 11111111 0 7 3 888888888 222222 7 555 33 7 77 7 0 7 7 00 7 33333 5 5 000 7 7 8 0 0 2 0 0 0 22 0 0 0 0 00 3 5 0000 0 0 0 55 555 0 0 5 0 0 00000 555 5 3 333 77777777777777777777777777 7 3 000000000 3 0 3 3333333 3 000000000000000000000 777777777777 000 000 000 3 2 888888 555 55555555555 6 66 22222222222222222222222222222222222 0 0 00000 888 88 6 66 888 4 0 0 66 8 0 8888 8 00 00 8 2222222222 2 0 0 000000000000000000000 0 555555555 5 55555555555555 00 2 7 3 7 3 3 3 0000000000000000000000000 33333333 3
consensus : TGT-TTG-GGT-TGGAAGACA----ATA-----TA--GAGACAAA-ATT--TGAGCGA-TTTACCCG-AT-------T-ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGAG----G--G-G-A--TGC-AC-TA-CTGACATCGCAGATCCACTGTTTGC-CGCATTCCA-GC-----------G--AC-G-TGAT-AAATCTAAC---GCGGTATTCTCGAGGAAGTATCCGTGT-TTT-GTTT-TA--T--TTA-TTTTATTTGAT---T-ATTT-C-AGTTT-TGGTATT-ATATATCGTATATCAA---AATAA--AT-CTGANTGTAT-TGAAGATGAT-TATTTTC-AAAGTAAGC-ATAATC-TTGAAA--GGGGGC-GGGGTAAA-AAGGCATC-NCGAATTACA-CCANGAATTTCGTGGTATGT-AGGG-TAAT-G--T--ACCGNATATCAATCAAAGT-ATGGAAAAGGGATATT-TTAAAAACACGTAAA-T-ATTTATGT-TT-TC-CCG-G-CGANGTAANCA-CAACAGTATTCTTCTTTAAGAGGAGAGAAAATGTTGTGTGCTCATCCTTCGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTTTAAAACTCGGGTTCACAATTACGNANTTCTTGAAAATCTCTACTTCATATTTTTTTTTTTTTTAGACAAA-TCG-GGTCTAAGTCC--GG-A-AAAGAG---CT------ATCGAGCATCT-TTATTAGAT-----AT-AAAATGACAAAATGAATGTAGTT-------GTTTTGTTGTTTTT-------GGGG-----TTTTTTTGGGGGGGGGGGC-------ATTGTTG-T-TGTTTCGGTTTTNATTTTTTTTTTATTTATGTGG----ATATA---TATATAT-ATGAAG----ATGAATCGGTTGA---T-------A-------T--ATA-------AT-TGA-AG-CTGAAT-----TTTTGC--TTTGAATTTATCAATA-TCTT-A-CGT-ATTTC-TANAATGTTTGCATG-CTTTCA--AAACACATAAAA--AAAATAAACA--AGAATATGTTT-CA-GCCTT-----TT------A-----AAATTCTAAA-TGA-T--AG---GGAGGGGG------GGG-----GTCTTCAATCTAGCCAAGT-GAGACGATTCTTCGT-AAAACCTGTGT-T--TTC-----AAACTCGG---ATATTTCAA--------AACTCGGACGCAT-GGGAAGACA
Reference ( family-4448 ) : TGT-TTG-GGT-TGGAAGACA----ATA-----TA--GAGACAAA-ATT--TGAGCGA-TTTACCCG-AT-------T-ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGAG----G--G-G-A--TGC-AC-TA-CTGACATCGCAGATCCACTGTTTGC-CGCATTCCA-GC-----------G--AC-G-TGAT-AAATCTAAC---GCGGTATTCTCGAGGAAGTATCCGTGT-TTT-GTTT-TA--T--TTA-TTTTATTTGAT---T-ATTT-C-AGTTTTTGGTATT-ATATNTCGTATATCAA---AATAA--AT-CTGANTGTAT-TGAAGATGAT-TATTTTC-AAAGTAAGC-ATAATC-TTGAAA--GGGGGC-GGGGTAAA-AAGGCATC-NCGAATTACA-CCANGAATTTCGTGGTATGT-AGGG-TAAT-G--T--ACCGNATATCAATCAAAGT-ATGGAAAAGGGATATT-TTAAAAACACGTAAA-T-ATTTATGT-TT-TC-CCG-G-CGANGTAANCA-CAACAGTATTCTTCTTTAAGAGGAGAGAAAATGTTGTGTGCTCATCCTTCGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTTTAAAACTCGGGTTCACAATTACGNANTTCTTGAAAATCTCTACTTCATATTTTTTTTTTTTTTAGACAAA-TCG-GGTCTAAGTCC--GG-A-AAAGAG---CT------ATCGAGCATCT-TTATTAGAT-----AT-AAAATGACAAAATGAATGTAGTT-------GTTTTGTTGTTTTT-------GGGG-----TTTTTTTGGGGGGGGGGGC-------ATTGTTG-T-TGTTTCGGTTTTNATTTTTTTTTTATTTATGTGG----ATATA---TATATAT-ATGAAG----ATGAATCGGTTGA---T-------A-------T--ATA-------AT-TGA-AG-CTGAAT-----TTTTGC--TTTGAATTTATCAATA-TCTT-A-CGT-ATTTC-TANAATGTTTGCATG-CTTTCA--AAACACATAAAA--AAAATAAACA--AGAATATGTTT-CA-GCCTT-----TT------A-----AAATTCTAAA-TGA-T--AG---GGAGGGGG------GGG-----GTCTTCAATCTAGCCAAGT-GAGACGATTCTTCGT-AAAACCTGTGT-T--TTC-----AAACTCGG---ATATTTCAA--------AACTCGGACGCAT-GGGAAGACA
gi|1 : TGT-TTG-GGT-TGAAAGATA----ATA-----AA--GAGACAAA-ATT--TGAGCGACTTTATCCA-AT-------T-ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGAG----G--G-A-A--TGC-ACTTA-CTGATATCGAAGATCCACTGTTTGC-CGCTTTCCAGGC-----------G--AC-G-TGATAAAATCTAAC---GCGGTATTCTCGAGGAAGTATTCGTGT-TTTCGTTT-TA--T--CTA-TTCAATTTGAG---T-ATTT-C-AGTTT
gi|1 : A--AT-CTAATTGTAT-TAACGATGAT-TTTTTTTTAAAG-AAGCCATACTGATTGAAAAAGGGGG--GGGGTTAA-AACGCATC-CCGAATTACA-CCACGA-TTTCGTGGTATGT-AGGG-TAAT-GGTT--A--GTATATCAAAGAACGT-AGGGTAACGATATATA-TCTAAAGCATGTAAA-T-ATTTATGTATT-TC-TCG-G-CGATGTAACCA-CAACAATATTCTTCTTTAAAAGGAGAGAAAATGTTGTGTACTCATTCTTCGCGTTG-TT-TAATAAGATGCTTGC--GAAAATATGTATTTTTAAAACT-GGGTTCACAATTACGCAATTCTTGAAAATCTCTACTTC-TATTTTTTTTTTTTTTAGACAAAGTCGCAGTCTAAGTC-------------------------ATCGAGCATTT-TAATTAGAT-----AT-AAACTGACAAAATAAATGTAGCT-------GTTTTGTTGTTTT---------GGGTTTATTTTTTTTGGGGGGG-------------TTGTTG-TGTGTTTC--TTTTCATTTATTTTTTATTGATATAATTATATATA---TATATAT-ATAAGA----ATGAATCAG--AA---T-------A-------T--ATA-------AA-TGA-AG-CTCGAT-----TTTTGC--TTTGAATTTATCAATG-TCTT---CGT-ATTTC-TAAAATGTTTGCATG-CTTTAA--AAACACATAAGA--AAAATAAACA--AGAATTTGTTT-CA-GCCTT-----TTAAAAAAA-----AAATTTTAAA-TGATT--AGCGAGGAGGGGG------GGG-----GTCTTC-ATCTAGC--AGTAGAGACAACCTTTCGTAAAAATCTTTGT-TTATTCAAACAAAACTCAGCCAATATTTCAAGATTAAAGAACTCGGACGCATAGAGAAGACAgcttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatctaattgtattaacgatgatttttttttaaagaagccatactgattgaaaaagggggggggttaaaacgcatcccgaattacaccacgatttcgtggtatgtagggtaatggttagtatatcaaagaacgtagggtaacgatatatatctaaagcatgtaaatatttatgtatttctcggcgatgtaaccacaacaatattcttctttaaaaggagagaaaatgttgtgtactcattcttcgcgttgtttaataagatgcttgcgaaaatatgtatttttaaaactgggttcacaattacgcaattcttgaaaatctctacttctattttttttttttttagacaaagtcgcagtctaagtcatcgagcattttaattagatataaactgacaaaataaatgtagctgttttgttgttttgggtttattttttttgggggggttgttgtgtgtttcttttcatttattttttattgatataattatatatatatatatataagaatgaatcagaatatataaatgaagctcgatttttgctttgaatttatcaatgtcttcgtatttctaaaatgtttgcatgctttaaaaacacataagaaaaataaacaagaatttgtttcagccttttaaaaaaaaaattttaaatgattagcgaggagggggggggtcttcatctagcagtagagacaacctttcgtaaaaatctttgtttattcaaacaaaactcagccaatatttcaagattaaagaactcggacgcatagagaagaca
gi|10 : tgtttgggttgaaagataataaagagacaaaatttgagcgactttatccaattatataatagttgcaacagcagaaaagagatatattgagggaatgcacttactgatatcgaagatccactgtttgccgctttccaggcgacgtgataaaatctaacgcggtattctcgaggaagtattcgtgttttcgttttatctattcaatttgagtatttcagtttgcttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncT-TTG-GGT-TGAAAGATA----ATA-----AA--GAGACAAACAT-----AGCGA-TTTACC-A-AT-------T-ATAT--AA--GT---TGCAAC-G----CA-AAAAGAGATATATTGAG----G--G-G-AGATGC-AC-TA-CTGACATCGAAGATCCACTGTTAGC-CGCA-TCCA-GC-----------G--ACTG-TGAT-AAATCTAAC---GCGGTATTCTCGA-AAAGTATTCATGT-TTC-G-TT-TA--TGATTA-TTTTATT
gi|11 : tactgtGTGA----ATGTAAAATATATTT-TTGCAA----GCGAATTGGAGGA---T-------AAATTAAAT--ATC-------AT-CGA-AGGCTGAAT-----TTTTGC---GTGGATCTATCAAT--TCTT-ATTTT-ATTTC-TA-AATGTTTGC----TTTTCATCAAATAC-CAAAA--TCAATAAA-A--GGA--ATGTTT-CA-gagatttttacatatttccta
gi|12 : tataaaatctaatatcttattagatttagtattggaatgactggcaaa-TTG-AGT-TGGATGACATGAAATAACATTTT--GAGCTAA---TTGCTGAGCAA-TTTGTCTG-AT-------T--TATTAAATAGC---TGCACCAG----TAGAGAAGAGATAAATTG-G----G--G-G-A--T---AC-TA-CGGGCGTCGCAGATGCATTGagc
gi|15 : tcTATGT-AGGACTAAT-G--T--ACCGAATATCAATCAAAGT-ATGGAAGAGGGATATT-TTAAAAACACGTAAA-TAATTAATGT-TT-TC-CCATG-CGAGGAAAACA-CAAgt
gi|16 : GATATATTGAG----G--GAG-A--TGC-AC-TA-TGGACATCGCAGAACCACTATTTGT-CGCATTCCA-GC-----------G--AC-G-TGAT-AAATCTAGC---GCGGTATTCT
gi|17 : TGTCTTG-GCT-TGGAAGACA----TTA-----CA--GAGACAAA-A-C--TGAGCGA-TTTACCTG-AT-------TGATAT--AATAa
gi|18 : acATGT-AAGG---AT-A--TTAGCCGAATATCAATCAAAGTTATGGAAGAGGGATATT-TTAAAAACACGTAcattgtagtt
gi|2 : T-TTG-GGT-TGAAAGATA----AGA-----AA--GAGACAAA-ATT--TGGGCGA-CTTATTCA-AT-------TCATGT--AATCGT---TGCAACAG----CAGAAAAGAGATATATTGAG----G--GTA-A--TG--AC-TA-GGGGTATCGAAGATTCACTGTTTGC-CGCGTTCC--GC-----------G--AC-GTTGAT--AATCTAAC---GCGGTATTT---GGGAAGTATTCG--------GTTTGTG--T--TTA-TTCTATTGAATTGGT-ATTTCC-AGTTTCTTGT-TG-ATATATC---TATGAC---AATTA-----CTAATTG--T-TGGAGATG-T-TTTTTTT-AAAG-AAG--ATAATG-TTGAAA--GGGGG--GGGTTAAA-AGAGCATT-CCGAATTTTATCCAAGAATTTTGTGGTATGT-AGGG-TAATGG--T--AGTG-ATATCA---AGAGT-AGGGTAAGGATATATT-CT---AGCATGTAAACT-ATTT-TGT-TTCTC-CTG-GCCGATGTAACCAGCAAC--TA-TCTTCTTTAAG-GGAGAGAAA----TGTGTG-TCATCTTTTGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTT---AACTCGGGTT-AC-ATTACGAACTTC-----AAT---TACTTCATATTTTTTTTTTTTGTAGACAAA-TCG-GGTCTAAGTCC--GGAA-AAAGAG---CT----------------T-TTATTAGAT-----AT--AAATG--AAAAT-AATGT-GTT-------TTTTTGTTTTTTTTGGGGGGGGGGG-----TTT------GGGGGGGGGT-------ATTGTTG------TTTGGTTTTGA-TTTTTTTATGTTTATGT-G----ATATA---TATATAT-G-GAAGC---ATGATTCAGTTGA---T-------T-------T--ATA-------GTATAATAA-CTGAGTGATTGTCTTGCCTTTTAAATTTTGCAGTATTCTT-A-CGT-ATTTC-T-TAATGTTTG-ATG-CTTT-A--AAACA-ATAACA--AAAATAAATACCAG-ATGTGTTTGCA-GCTTT-----TT------A-----AAAATCTAAA-TGA-TGAAG---GGGGGGGG------GGGGGAGTGTCTTCAATCTAG
gi|3 : actgtGAATTCGTTGA---TTTATCAAA-------T--ACG-------AT-TGA-AG-CTTAAT-----TTTTGT--TTTGATCTAAGCAAT--TCTT-A-CATTATTTG-TATAATGCTTGCATGATTTTCA--ACAGATATAAAA--AAAA-------------ATATTT-CA-AGCTTACTGGTT------A-----T--TTTTAAA-AGA-T--AG---GAAGGGGT------G--------TCTCCAGCCTAGCCAAGT-GAGAGGATTCT--GT-AAA-CTTGTGTAT--TTC-----AAACTCGG---ATATTTCAA--------AATTTGGACACAT-GGGAAGACA
gi|4 : TTTATTGAGA-TTTTTA-CAT-ATTTCCTAAAATGTTTGCATG-CTTTCC--AA-CACATAAAAGAAAAATAA-CA--AGAATAT-----CAAGCCTT-----TT------TTTTTTAAATTCCAAAATGA-T--AT---G-AGGGTGTGTGTTGGG-----GTC--CAATCTAGCCAAGT-GAGACAATTCTTCGT-AAAACCTGT-------------------------ATATTTCAA--------AACTCGGACGCAT-GGGAAGACAactagtagtatgcaatcataaaacaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatcaaataaataaaaacatgcattaaatctaacattctttacattgcattacattgaagtgtacaatgtacatcttccaacgaatagattgtatgcatgtagtgattgtataaaataacaaacataatgagattcaacgagagcttggattttaatgtttacaaattaattcatcaattatcctcagattatgaagacagagtgtatgttcagatgtagcagttatcatctggtt
gi|5 : t-TTG-GGT-TGGAAGACA----ATA-----TG--GAAACAAA-AAT--TGAGCGA-TTTACCCT-AT-------TGATAT--TATTAC---TGCAACAGTGCTCAGCAAAGAGATATATTGAG----G--G-GGA--TGG-AC-TA-CCGACA--GCAGATCCACCGTTTGC-CGCAATCCA-GCCCTGGCCTGGAGCTAC-G-TGAT-AAATCTAATTATATGGTATTCTCAAGGAAGTATCCATGT-TTT-GTTT-TAAATAATTA-TTTTATTTAAT---T-TTCT-C-ACTTT---GTATTGATACAT-GTATATCTAGTTAATAACAATACTGATTGTAT-GGAAGATGAT-TATTT-C-AAAGTA-GC-ATAATC-TTGAA---GGGGGC-AGGGTAAA-AAGGCATC-ATGAATTACA-CCATGAATTTCGTGGTATTT-AGGA------G--T--ACCACATAT--------AT-ATGGAGAAAGGATATTATTAAAAACTCGTAAA-T-AATTATGC-AT-TCTCCT-G-CAAAGTAAACA-CAACAGTATTCTTGTTTAAagtaatatactattacgcaaccatcaaaccacactacttacattgtgccaagatgaataaagccatgcatgaacaatctaacattctacatgtatcaaattgcattatacatcttccaacgaataaattgatatttaacatgaatatataataataaacatgaagagattcaaacgagatcttgaagttaaaattgttcaacaaacaaattttaaaattaataaatcaaatattgtcagattatcgaagaccgaatttttgttcagatctatgcagttacatgtatcattttgttt
gi|6 : ta-TTG-GGT-TGGACGACA----ATA-----TA--GAGA-ATA-TTT--TTAGCGA-TTTACCCA-AT-------TTATAT--AATAGT---TGCAATAG----CAGAA--GAGATCTATTGAGAGGGG--G-G-A--TGC-AC-CA-CTTACATCGCAGATCCACTGTTTGC-CGCATTCCA-GC-----------G--GC-G-TGAT-AAATTTAAC---GCGGTATCCTTGAGGAACTATTCATGT-TTT-GTTT-TA------------------AT---T-ATTT-C-AGT--------TT-GTATATC-TA-ATAAA---AATA------CCGACTGTAT-GAAAGATG-T---------------AGC-ATAATC-TTG-AA--GGGAGCGGGGGTAAA-AAGGCATC-CCGAATTACA-CCATGGA-TTCGTGGTATGTAAGAG-TAAT-G--T--ACCGTATATCAATCAAAGT-ATGGAGAAAGGATATT-TTTAAAACATGTAAA-
gi|7 : tgccT-TTGAGGTATGGAGAAAA----ATA-----TATAGCGACAAA------TGAGAGA-TT-ACCCATATAAA----T-ATAT--AATAATACATGCAACAG----TAGCAAGAAGACATGTTGAA----GAAG-G-G--TGTTAC-TAACTCACACCGCAGATGCACTGTTTGAGCGTATTCCA-AC-----------G--AA-G-T--T-GGATC-AAC-----------CTAGAGGAACTATCCGTGTGTTT-GCTT-TA--T--ATAATCTTATTTGAT---TTATTT-CCAGTT---GGTATC-ATATGTCGTATAACAA---AA--A--AC-CTGAATGTATCTGAAGATGATCTAATTTC-AAAGTAA-C-ATAA-C-TTGAA-----GGAT-GGAGTAAATCAGGCATCTACAAATTACA-CCAGG-ATTT
gi|8 : tctT-TTGAGGT-TGGAGAAAA----ATA-----TA--GCGACAAA-AAT---GAGAGA-TTTACCTC-ATATAAATAT-ATAT--AATACA---TGCAACAG----TAGCAAGAAGATATGTTGAA----GA-G-G-G--TGT-AC-TA-CTCACACCGCAGATGCACTGTTTGA-CGTATTCCA-AC-----------G--AA-G-TGAT-CAACCTA----------------GAGGAACTATCCGTGT-TTT-GCTT-TA--T--TAA-TCTTATTTGAT---T-ATTT-C-AG---TTGGTATTCATATGTCGTATAACAA---AA--------CTGAATGTAC-TGAAGATGAT-TAATTT--AAAGTAA-C-ATAATC-TTGAAA--GGATG--GAGGTAAT-CAGGCATC-ACGAATTACA-CCAGGAATTTTGgaga
gi|9 : actcTTTTTTTTTTTTTGAGACAAA-TCG-G-TCAAAGTCCACGG-ACAAAGAAACACTTTACAAATCGAGCATCTATTATTAGATTAATAATTAAAATGACAAAATGAATGTAGTTACAACAAGTGTTTTTG-TTTT-------G-----------TTTTGGGGGGGGGGGCGGGTGAAATTGTTGTT-TGTTTTGATTTTTTTTTTTTTTTTATTT---TGG----ATATA---TATTTATAATAAAGAGATATAAATCAGTTGATTTT-------A-------TCAATATTAGTATAC-TGA-AG-CTGAAT-----TTTT-T--TTTG--TTTAaga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATACAAAATCTAATACTTTATCAGGTTACATGTACACTGAGATGTGCATTCACTGAGATGTGCATCTTCCAACGAATTAAATGGTATATAAAATGATTGTAAATTAAAT
Unaligned ( gi|14 ): TGAGAAATTCTTAAATAAACTGTGTATGCAAACCTTCTAGGCATATAGGACGACAACAATATTACGCGAGACTTGAAACCACGCTATTTTACATTGTACCAAG
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 111111111 111111 333333333 1111 11 22222222222 1111 222222 111 33333333333 1 111 44444444 222222222 111111 111 22 11 1 1 1 1 11 1 1 11 1 2222 1 1 1 11 222 1 1 1 22222 222 1 1 111 11111111111111111111111111 1 333333333 1 4444444 999999999999999999999 444444444444 333 111 222222 111 33333333333 66666666666666666666666666666666666 22222 111 22 111 1111 11 2222222222 555555555555555555555 1 111111111 44444444444444 1 1 8888888888888888888888888 44444444 1
lowQualScore : 4 8 4 0 9999 444444444 888888 4 999 111111111 66 888 0000 9999 00 8 4 66 99 4 4 0 0 5 0 5 33333333333 66 5 5 77 0000 33 0 5 5 2 5 111111 5 111 6 6 6 00000000000 0 0 1 444 88888888 1 6 7 000000000 777777 6 666 44 6 77 6 1 1 6 44 6 99999 2 7 999 6 6 7 8 0 3 0 0 0 00 0 1 1 0 11 7 5 4444 5 5 5 77 111 5 5 5 1 1 77777 000 5 3 555 11111111111111111111111111 3 3 666666666 7 2 7 3333333 7 000000000000000000000 888888888888 444 111 888 7 0 555555 777 33333333333 4 66 66666666666666666666666666666666666 8 8 00000 111 44 0 11 666 1 8 8 99 0 8 1111 0 44 11 0 6666666666 3 8 8 999999999999999999999 0 999999999 6 22222222222222 44 3 6 3 0 7 3 7 4444444444444444444444444 88888888 3
lowQualScore : . . . . .... ......... ...... . ... ......... .. ... .... .... .. . . .. .. . . . . . . . ........... .. . . .. .... .. . . . . . ...... . ... . . . ........... . . . ... ........ . . . ......... ...... . ... .. . .. . . . . .. . ..... . . ... . . . . . . . . . .. . . . . .. . . .... . . . .. ... . . . . . ..... ... . . ... .......................... . . ......... . . . ....... . ..................... ............ ... ... ... . . ...... ... ........... . .. ................................... . . ..... ... .. . .. ... . . . .. . . .... . .. .. . .......... . . . ..................... . ......... . .............. .. . . . . . . . ......................... ........ .
lowQualScore : 4 9 4 9 4444 111111111 222222 4 888 000000000 11 888 6666 4444 66 9 4 11 11 4 4 7 1 0 4 0 88888888888 99 0 0 00 1111 11 7 7 7 3 7 999999 7 777 7 7 7 66666666666 0 8 4 000 11111111 0 7 3 888888888 222222 7 555 33 7 77 7 0 7 7 00 7 33333 5 5 000 7 7 8 0 0 2 0 0 0 22 0 0 0 0 00 3 5 0000 0 0 0 55 555 0 0 5 0 0 00000 555 5 3 333 77777777777777777777777777 7 3 000000000 3 0 3 3333333 3 000000000000000000000 777777777777 000 000 000 3 2 888888 555 55555555555 6 66 22222222222222222222222222222222222 0 0 00000 888 88 6 66 888 4 0 0 66 8 0 8888 8 00 00 8 2222222222 2 0 0 000000000000000000000 0 555555555 5 55555555555555 00 2 7 3 7 3 3 3 0000000000000000000000000 33333333 3
consensus : TGT-TTG-GGT-TGGAAGACA----ATA-----TA--GAGACAAA-ATT--TGAGCGA-TTTACCCG-AT-------T-ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGAG----G--G-G-A--TGC-AC-TA-CTGACATCGCAGATCCACTGTTTGC-CGCATTCCA-GC-----------G--AC-G-TGAT-AAATCTAAC---GCGGTATTCTCGAGGAAGTATCCGTGT-TTT-GTTT-TA--T--TTA-TTTTATTTGAT---T-ATTT-C-AGTTT-TGGTATT-ATATATCGTATATCAA---AATAA--AT-CTGANTGTAT-TGAAGATGAT-TATTTTC-AAAGTAAGC-ATAATC-TTGAAA--GGGGGC-GGGGTAAA-AAGGCATC-NCGAATTACA-CCANGAATTTCGTGGTATGT-AGGG-TAAT-G--T--ACCGNATATCAATCAAAGT-ATGGAAAAGGGATATT-TTAAAAACACGTAAA-T-ATTTATGT-TT-TC-CCG-G-CGANGTAANCA-CAACAGTATTCTTCTTTAAGAGGAGAGAAAATGTTGTGTGCTCATCCTTCGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTTTAAAACTCGGGTTCACAATTACGNANTTCTTGAAAATCTCTACTTCATATTTTTTTTTTTTTTAGACAAA-TCG-GGTCTAAGTCC--GG-A-AAAGAG---CT------ATCGAGCATCT-TTATTAGAT-----AT-AAAATGACAAAATGAATGTAGTT-------GTTTTGTTGTTTTT-------GGGG-----TTTTTTTGGGGGGGGGGGC-------ATTGTTG-T-TGTTTCGGTTTTNATTTTTTTTTTATTTATGTGG----ATATA---TATATAT-ATGAAG----ATGAATCGGTTGA---T-------A-------T--ATA-------AT-TGA-AG-CTGAAT-----TTTTGC--TTTGAATTTATCAATA-TCTT-A-CGT-ATTTC-TANAATGTTTGCATG-CTTTCA--AAACACATAAAA--AAAATAAACA--AGAATATGTTT-CA-GCCTT-----TT------A-----AAATTCTAAA-TGA-T--AG---GGAGGGGG------GGG-----GTCTTCAATCTAGCCAAGT-GAGACGATTCTTCGT-AAAACCTGTGT-T--TTC-----AAACTCGG---ATATTTCAA--------AACTCGGACGCAT-GGGAAGACA
Reference ( family-4448 ) : TGT-TTG-GGT-TGGAAGACA----ATA-----TA--GAGACAAA-ATT--TGAGCGA-TTTACCCG-AT-------T-ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGAG----G--G-G-A--TGC-AC-TA-CTGACATCGCAGATCCACTGTTTGC-CGCATTCCA-GC-----------G--AC-G-TGAT-AAATCTAAC---GCGGTATTCTCGAGGAAGTATCCGTGT-TTT-GTTT-TA--T--TTA-TTTTATTTGAT---T-ATTT-C-AGTTT-TGGTATT-ATATATCGTATATCAA---AATAA--AT-CTGANTGTAT-TGAAGATGAT-TATTTTC-AAAGTAAGC-ATAATC-TTGAAA--GGGGGC-GGGGTAAA-AAGGCATC-NCGAATTACA-CCANGAATTTCGTGGTATGT-AGGG-TAAT-G--T--ACCGNATATCAATCAAAGT-ATGGAAAAGGGATATT-TTAAAAACACGTAAA-T-ATTTATGT-TT-TC-CCG-G-CGANGTAANCA-CAACAGTATTCTTCTTTAAGAGGAGAGAAAATGTTGTGTGCTCATCCTTCGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTTTAAAACTCGGGTTCACAATTACGNANTTCTTGAAAATCTCTACTTCATATTTTTTTTTTTTTTAGACAAA-TCG-GGTCTAAGTCC--GG-A-AAAGAG---CT------ATCGAGCATCT-TTATTAGAT-----AT-AAAATGACAAAATGAATGTAGTT-------GTTTTGTTGTTTTT-------GGGG-----TTTTTTTGGGGGGGGGGGC-------ATTGTTG-T-TGTTTCGGTTTTNATTTTTTTTTTATTTATGTGG----ATATA---TATATAT-ATGAAG----ATGAATCGGTTGA---T-------A-------T--ATA-------AT-TGA-AG-CTGAAT-----TTTTGC--TTTGAATTTATCAATA-TCTT-A-CGT-ATTTC-TANAATGTTTGCATG-CTTTCA--AAACACATAAAA--AAAATAAACA--AGAATATGTTT-CA-GCCTT-----TT------A-----AAATTCTAAA-TGA-T--AG---GGAGGGGG------GGG-----GTCTTCAATCTAGCCAAGT-GAGACGATTCTTCGT-AAAACCTGTGT-T--TTC-----AAACTCGG---ATATTTCAA--------AACTCGGACGCAT-GGGAAGACA
gi|1 : TGT-TTG-GGT-TGAAAGATA----ATA-----AA--GAGACAAA-ATT--TGAGCGACTTTATCCA-AT-------T-ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGAG----G--G-A-A--TGC-ACTTA-CTGATATCGAAGATCCACTGTTTGC-CGCTTTCCAGGC-----------G--AC-G-TGATAAAATCTAAC---GCGGTATTCTCGAGGAAGTATTCGTGT-TTTCGTTT-TA--T--CTA-TTCAATTTGAG---T-ATTT-C-AGTTT-
gi|1 : A--AT-CTAATTGTAT-TAACGATGAT-TTTTTTTTAAAG-AAGCCATACTGATTGAAAAAGGGGG--GGGGTTAA-AACGCATC-CCGAATTACA-CCACGA-TTTCGTGGTATGT-AGGG-TAAT-GGTT--A--GTATATCAAAGAACGT-AGGGTAACGATATATA-TCTAAAGCATGTAAA-T-ATTTATGTATT-TC-TCG-G-CGATGTAACCA-CAACAATATTCTTCTTTAAAAGGAGAGAAAATGTTGTGTACTCATTCTTCGCGTTG-TT-TAATAAGATGCTTGC--GAAAATATGTATTTTTAAAACT-GGGTTCACAATTACGCAATTCTTGAAAATCTCTACTTC-TATTTTTTTTTTTTTTAGACAAAGTCGCAGTCTAAGTC-------------------------ATCGAGCATTT-TAATTAGAT-----AT-AAACTGACAAAATAAATGTAGCT-------GTTTTGTTGTTTT---------GGGTTTATTTTTTTTGGGGGGG-------------TTGTTG-TGTGTTTC--TTTTCATTTATTTTTTATTGATATAATTATATATA---TATATAT-ATAAGA----ATGAATCAG--AA---T-------A-------T--ATA-------AA-TGA-AG-CTCGAT-----TTTTGC--TTTGAATTTATCAATG-TCTT---CGT-ATTTC-TAAAATGTTTGCATG-CTTTAA--AAACACATAAGA--AAAATAAACA--AGAATTTGTTT-CA-GCCTT-----TTAAAAAAA-----AAATTTTAAA-TGATT--AGCGAGGAGGGGG------GGG-----GTCTTC-ATCTAGC--AGTAGAGACAACCTTTCGTAAAAATCTTTGT-TTATTCAAACAAAACTCAGCCAATATTTCAAGATTAAAGAACTCGGACGCATAGAGAAGACAgcttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatctaattgtattaacgatgatttttttttaaagaagccatactgattgaaaaagggggggggttaaaacgcatcccgaattacaccacgatttcgtggtatgtagggtaatggttagtatatcaaagaacgtagggtaacgatatatatctaaagcatgtaaatatttatgtatttctcggcgatgtaaccacaacaatattcttctttaaaaggagagaaaatgttgtgtactcattcttcgcgttgtttaataagatgcttgcgaaaatatgtatttttaaaactgggttcacaattacgcaattcttgaaaatctctacttctattttttttttttttagacaaagtcgcagtctaagtcatcgagcattttaattagatataaactgacaaaataaatgtagctgttttgttgttttgggtttattttttttgggggggttgttgtgtgtttcttttcatttattttttattgatataattatatatatatatatataagaatgaatcagaatatataaatgaagctcgatttttgctttgaatttatcaatgtcttcgtatttctaaaatgtttgcatgctttaaaaacacataagaaaaataaacaagaatttgtttcagccttttaaaaaaaaaattttaaatgattagcgaggagggggggggtcttcatctagcagtagagacaacctttcgtaaaaatctttgtttattcaaacaaaactcagccaatatttcaagattaaagaactcggacgcatagagaagaca
gi|10 : tgtttgggttgaaagataataaagagacaaaatttgagcgactttatccaattatataatagttgcaacagcagaaaagagatatattgagggaatgcacttactgatatcgaagatccactgtttgccgctttccaggcgacgtgataaaatctaacgcggtattctcgaggaagtattcgtgttttcgttttatctattcaatttgagtatttcagtttgcttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncT-TTG-GGT-TGAAAGATA----ATA-----AA--GAGACAAACAT-----AGCGA-TTTACC-A-AT-------T-ATAT--AA--GT---TGCAAC-G----CA-AAAAGAGATATATTGAG----G--G-G-AGATGC-AC-TA-CTGACATCGAAGATCCACTGTTAGC-CGCA-TCCA-GC-----------G--ACTG-TGAT-AAATCTAAC---GCGGTATTCTCGA-AAAGTATTCATGT-TTC-G-TT-TA--TGATTA-TTTTATT
gi|11 : tactgtGTGA----ATGTAAAATATATTT-TTGCAA----GCGAATTGGAGGA---T-------AAATTAAAT--ATC-------AT-CGA-AGGCTGAAT-----TTTTGC---GTGGATCTATCAAT--TCTT-ATTTT-ATTTC-TA-AATGTTTGC----TTTTCATCAAATAC-CAAAA--TCAATAAA-A--GGA--ATGTTT-CA-gagatttttacatatttccta
gi|12 : tataaaatctaatatcttattagatttagtattggaatgactggcaaa-TTG-AGT-TGGATGACATGAAATAACATTTT--GAGCTAA---TTGCTGAGCAA-TTTGTCTG-AT-------T--TATTAAATAGC---TGCACCAG----TAGAGAAGAGATAAATTG-G----G--G-G-A--T---AC-TA-CGGGCGTCGCAGATGCATTGagc
gi|15 : tcTATGT-AGGACTAAT-G--T--ACCGAATATCAATCAAAGT-ATGGAAGAGGGATATT-TTAAAAACACGTAAA-TAATTAATGT-TT-TC-CCATG-CGAGGAAAACA-CAAgt
gi|16 : GATATATTGAG----G--GAG-A--TGC-AC-TA-TGGACATCGCAGAACCACTATTTGT-CGCATTCCA-GC-----------G--AC-G-TGAT-AAATCTAGC---GCGGTATTCT
gi|17 : TGTCTTG-GCT-TGGAAGACA----TTA-----CA--GAGACAAA-A-C--TGAGCGA-TTTACCTG-AT-------TGATAT--AATAa
gi|18 : acATGT-AAGG---AT-A--TTAGCCGAATATCAATCAAAGTTATGGAAGAGGGATATT-TTAAAAACACGTAcattgtagtt
gi|2 : T-TTG-GGT-TGAAAGATA----AGA-----AA--GAGACAAA-ATT--TGGGCGA-CTTATTCA-AT-------TCATGT--AATCGT---TGCAACAG----CAGAAAAGAGATATATTGAG----G--GTA-A--TG--AC-TA-GGGGTATCGAAGATTCACTGTTTGC-CGCGTTCC--GC-----------G--AC-GTTGAT--AATCTAAC---GCGGTATTT---GGGAAGTATTCG--------GTTTGTG--T--TTA-TTCTATTGAATTGGT-ATTTCC-AGTTTCTTGT-TG-ATATATC---TATGAC---AATTA-----CTAATTG--T-TGGAGATG-T-TTTTTTT-AAAG-AAG--ATAATG-TTGAAA--GGGGG--GGGTTAAA-AGAGCATT-CCGAATTTTATCCAAGAATTTTGTGGTATGT-AGGG-TAATGG--T--AGTG-ATATCA---AGAGT-AGGGTAAGGATATATT-CT---AGCATGTAAACT-ATTT-TGT-TTCTC-CTG-GCCGATGTAACCAGCAAC--TA-TCTTCTTTAAG-GGAGAGAAA----TGTGTG-TCATCTTTTGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTT---AACTCGGGTT-AC-ATTACGAACTTC-----AAT---TACTTCATATTTTTTTTTTTTGTAGACAAA-TCG-GGTCTAAGTCC--GGAA-AAAGAG---CT----------------T-TTATTAGAT-----AT--AAATG--AAAAT-AATGT-GTT-------TTTTTGTTTTTTTTGGGGGGGGGGG-----TTT------GGGGGGGGGT-------ATTGTTG------TTTGGTTTTGA-TTTTTTTATGTTTATGT-G----ATATA---TATATAT-G-GAAGC---ATGATTCAGTTGA---T-------T-------T--ATA-------GTATAATAA-CTGAGTGATTGTCTTGCCTTTTAAATTTTGCAGTATTCTT-A-CGT-ATTTC-T-TAATGTTTG-ATG-CTTT-A--AAACA-ATAACA--AAAATAAATACCAG-ATGTGTTTGCA-GCTTT-----TT------A-----AAAATCTAAA-TGA-TGAAG---GGGGGGGG------GGGGGAGTGTCTTCAATCTAG
gi|3 : actgtGAATTCGTTGA---TTTATCAAA-------T--ACG-------AT-TGA-AG-CTTAAT-----TTTTGT--TTTGATCTAAGCAAT--TCTT-A-CATTATTTG-TATAATGCTTGCATGATTTTCA--ACAGATATAAAA--AAAA-------------ATATTT-CA-AGCTTACTGGTT------A-----T--TTTTAAA-AGA-T--AG---GAAGGGGT------G--------TCTCCAGCCTAGCCAAGT-GAGAGGATTCT--GT-AAA-CTTGTGTAT--TTC-----AAACTCGG---ATATTTCAA--------AATTTGGACACAT-GGGAAGACA
gi|4 : TTTATTGAGA-TTTTTA-CAT-ATTTCCTAAAATGTTTGCATG-CTTTCC--AA-CACATAAAAGAAAAATAA-CA--AGAATAT-----CAAGCCTT-----TT------TTTTTTAAATTCCAAAATGA-T--AT---G-AGGGTGTGTGTTGGG-----GTC--CAATCTAGCCAAGT-GAGACAATTCTTCGT-AAAACCTGT-------------------------ATATTTCAA--------AACTCGGACGCAT-GGGAAGACAactagtagtatgcaatcataaaacaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatcaaataaataaaaacatgcattaaatctaacattctttacattgcattacattgaagtgtacaatgtacatcttccaacgaatagattgtatgcatgtagtgattgtataaaataacaaacataatgagattcaacgagagcttggattttaatgtttacaaattaattcatcaattatcctcagattatgaagacagagtgtatgttcagatgtagcagttatcatctggtt
gi|5 : t-TTG-GGT-TGGAAGACA----ATA-----TG--GAAACAAA-AAT--TGAGCGA-TTTACCCT-AT-------TGATAT--TATTAC---TGCAACAGTGCTCAGCAAAGAGATATATTGAG----G--G-GGA--TGG-AC-TA-CCGACA--GCAGATCCACCGTTTGC-CGCAATCCA-GCCCTGGCCTGGAGCTAC-G-TGAT-AAATCTAATTATATGGTATTCTCAAGGAAGTATCCATGT-TTT-GTTT-TAAATAATTA-TTTTATTTAAT---T-TTCT-C-ACTTT---GTATTGATACAT-GTATATCTAGTTAATAACAATACTGATTGTAT-GGAAGATGAT-TATTT-C-AAAGTA-GC-ATAATC-TTGAA---GGGGGC-AGGGTAAA-AAGGCATC-ATGAATTACA-CCATGAATTTCGTGGTATTT-AGGA------G--T--ACCACATAT--------AT-ATGGAGAAAGGATATTATTAAAAACTCGTAAA-T-AATTATGC-AT-TCTCCT-G-CAAAGTAAACA-CAACAGTATTCTTGTTTAAagtaatatactattacgcaaccatcaaaccacactacttacattgtgccaagatgaataaagccatgcatgaacaatctaacattctacatgtatcaaattgcattatacatcttccaacgaataaattgatatttaacatgaatatataataataaacatgaagagattcaaacgagatcttgaagttaaaattgttcaacaaacaaattttaaaattaataaatcaaatattgtcagattatcgaagaccgaatttttgttcagatctatgcagttacatgtatcattttgttt
gi|6 : ta-TTG-GGT-TGGACGACA----ATA-----TA--GAGA-ATA-TTT--TTAGCGA-TTTACCCA-AT-------TTATAT--AATAGT---TGCAATAG----CAGAA--GAGATCTATTGAGAGGGG--G-G-A--TGC-AC-CA-CTTACATCGCAGATCCACTGTTTGC-CGCATTCCA-GC-----------G--GC-G-TGAT-AAATTTAAC---GCGGTATCCTTGAGGAACTATTCATGT-TTT-GTTT-TA------------------AT---T-ATTT-C-AGT--------TT-GTATATC-TA-ATAAA---AATA------CCGACTGTAT-GAAAGATG-T---------------AGC-ATAATC-TTG-AA--GGGAGCGGGGGTAAA-AAGGCATC-CCGAATTACA-CCATGGA-TTCGTGGTATGTAAGAG-TAAT-G--T--ACCGTATATCAATCAAAGT-ATGGAGAAAGGATATT-TTTAAAACATGTAAA-
gi|7 : tgccT-TTGAGGTATGGAGAAAA----ATA-----TATAGCGACAAA------TGAGAGA-TT-ACCCATATAAA----T-ATAT--AATAATACATGCAACAG----TAGCAAGAAGACATGTTGAA----GAAG-G-G--TGTTAC-TAACTCACACCGCAGATGCACTGTTTGAGCGTATTCCA-AC-----------G--AA-G-T--T-GGATC-AAC-----------CTAGAGGAACTATCCGTGTGTTT-GCTT-TA--T--ATAATCTTATTTGAT---TTATTT-CCAGTT---GGTATC-ATATGTCGTATAACAA---AA--A--AC-CTGAATGTATCTGAAGATGATCTAATTTC-AAAGTAA-C-ATAA-C-TTGAA-----GGAT-GGAGTAAATCAGGCATCTACAAATTACA-CCAGG-ATTT
gi|8 : tctT-TTGAGGT-TGGAGAAAA----ATA-----TA--GCGACAAA-AAT---GAGAGA-TTTACCTC-ATATAAATAT-ATAT--AATACA---TGCAACAG----TAGCAAGAAGATATGTTGAA----GA-G-G-G--TGT-AC-TA-CTCACACCGCAGATGCACTGTTTGA-CGTATTCCA-AC-----------G--AA-G-TGAT-CAACCTA----------------GAGGAACTATCCGTGT-TTT-GCTT-TA--T--TAA-TCTTATTTGAT---T-ATTT-C-AG--T-TGGTATTCATATGTCGTATAACAA---AA--------CTGAATGTAC-TGAAGATGAT-TAATTT--AAAGTAA-C-ATAATC-TTGAAA--GGATG--GAGGTAAT-CAGGCATC-ACGAATTACA-CCAGGAATTTTGgaga
gi|9 : actcTTTTTTTTTTTTTGAGACAAA-TCG-G-TCAAAGTCCACGG-ACAAAGAAACACTTTACAAATCGAGCATCTATTATTAGATTAATAATTAAAATGACAAAATGAATGTAGTTACAACAAGTGTTTTTG-TTTT-------G-----------TTTTGGGGGGGGGGGCGGGTGAAATTGTTGTT-TGTTTTGATTTTTTTTTTTTTTTTATTT---TGG----ATATA---TATTTATAATAAAGAGATATAAATCAGTTGATTTT-------A-------TCAATATTAGTATAC-TGA-AG-CTGAAT-----TTTT-T--TTTG--TTTAaga
blockSeqs : C A A TGAA ACATTTT TTGC . CAT ATAAATAT TA ACA TGCT AGGG AA A G GA TT . A G . CCTGGCCTGGA CT T T A TATA TC G . T G AATAAT A TGG T C C TTGGTATTC G T GTT TAACAATA T C A CTAATTTC TAGC . A CG T TA T A A A CT G TTA C A ATC T A A C A A . C T AT C G A G AG T . . . G G CC . C . . A C . . A . GG CACGGACAAAGAAACACTTTACAAA C A TAATAATTA A G A ACAACAA T TGGGGGGGGGGGTTT GGGGCGGGTGAA TT TGG TTT A GA AAA AATAAAGAGAT G AG TTTTATCAATATTAGTATAC T G GATTG CTT GA AT AT T T C AT A CATC TA GA ATACCAGAT G G A TTTTTTTTAA A TGAAG G TGTGTTGGG TT A C . T . A GTATTTCAAACTCGG . .
blockSeqs : . A . . TATA CAT . TG AAAT . . . . A T . . C . . . . . . . . A G TC . . T . TGAT . . . . . TTGTATTG G T . AAC T . A TTTTTTT TAAC . A C . C . T A . T . T C A ATC . . A . . A . . . G . T C . . . . G CGGAAAAAGAGCT . . AT . . . . . TGT GGGGT . TGA GA . GG . TTGCAA A TT TAAATTAAATATCAT . . . T AA A TA G . . AA . CA CA . CAAGAAT G . . ACTGGTTAT . TAG A GGGGGAGT TC A C . . . . . . .
blockSeqs : . . . . AA ATT . TG TG . . . . . . . . C . . . . . . . . A G TT . . T . TT . . . . . TGGTATC G A . TA C . A TATTTC TAAC . A T . A . T G . T . T G C ATC . . A . . . . . . T . A A . G . GGAAGC C TT TTTATCAAATACGAT . . . T AT . A A . . A . CC C . AAGGA A . . TTAAA . TAT . G . A
blockSeqs : . . . . CA AAT . CA TC . . . . . . . . G . . . . . . . . A G TA . . C . TA . . . . . TT . A . . A . . TAATTT AAG . . . . C . G A . . . T C T . . . T . A TT TTTATAGTA . . . . . . A A . . T . A A . . . . .
blockSeqs : . . . . AA TTT . CT TG . . . . . . . . C . . . . . . . . G G . . . C . TT . . . . . A . . . AGC . . . . A . G . . . . T C . . . . .
blockSeqs : . . . . TG AAT . CA TT . . . . . . . . T . . . . . . . . C . . . . . . . .
blockSeqs : . . . . TA AC . TC T . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . TA . . A T . . . . . . . . .
blockSeqCons : T******** A* TTGTAT***** A******* TATTTT*** TAAC** A** T* T**** TT TTTATCAAATAC*********************** A* A** A* CA AGG*******
originalCons : TGT-TTG-GGT-TGGAAGACA----ATA-----TA--GAGACAAA-ATT--TGAGCGA-TTTACCCG-AT-------T-ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGAG----G--G-G-A--TGC-AC-TA-CTGACATCGCAGATCCACTGTTTGC-CGCATTCCA-GC-----------G--AC-G-TGAT-AAATCTAAC---GCGGTATTCTCGAGGAAGTATCCGTGT-TTT-GTTT-TA--T--TTA-TTTTATTTGAT---T-ATTT-C-AGTTT-TGGTATT-ATATATCGTATATCAA---AATAA--AT-CTGANTGTAT-TGAAGATGAT-TATTTTC-AAAGTAAGC-ATAATC-TTGAAA--GGGGGC-GGGGTAAA-AAGGCATC-NCGAATTACA-CCANGAATTTCGTGGTATGT-AGGG-TAAT-G--T--ACCGNATATCAATCAAAGT-ATGGAAAAGGGATATT-TTAAAAACACGTAAA-T-ATTTATGT-TT-TC-CCG-G-CGANGTAANCA-CAACAGTATTCTTCTTTAAGAGGAGAGAAAATGTTGTGTGCTCATCCTTCGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTTTAAAACTCGGGTTCACAATTACGNANTTCTTGAAAATCTCTACTTCATATTTTTTTTTTTTTTAGACAAA-TCG-GGTCTAAGTCC--GG-A-AAAGAG---CT------ATCGAGCATCT-TTATTAGAT-----AT-AAAATGACAAAATGAATGTAGTT-------GTTTTGTTGTTTTT-------GGGG-----TTTTTTTGGGGGGGGGGGC-------ATTGTTG-T-TGTTTCGGTTTTNATTTTTTTTTTATTTATGTGG----ATATA---TATATAT-ATGAAG----ATGAATCGGTTGA---T-------A-------T--ATA-------AT-TGA-AG-CTGAAT-----TTTTGC--TTTGAATTTATCAATA-TCTT-A-CGT-ATTTC-TANAATGTTTGCATG-CTTTCA--AAACACATAAAA--AAAATAAACA--AGAATATGTTT-CA-GCCTT-----TT------A-----AAATTCTAAA-TGA-T--AG---GGAGGGGG------GGG-----GTCTTCAATCTAGCCAAGT-GAGACGATTCTTCGT-AAAACCTGTGT-T--TTC-----AAACTCGG---ATATTTCAA--------AACTCGGACGCAT-GGGAAGACA
finalCons : TGT-TTG-GGT-TGGAAGACA----ATA-----TA--GAGACAAA-ATT--TGAGCGA-TTTACCCG-ATT--------ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGAG----G--G-G-A--TGC-AC-TA-CTGACATCGCAGATCCACTGTTTGC-CGCATTCCA-GC-----------G--AC-G-TGATA-AATCTAAC---GCGGTATTCTCGAGGAAGTATCCGTGT-TTT-GTTT-TA--T--TTA-TTTTATTTGAT---T-ATTT-C-AGTTTGTAT-----ATATATCGTATATCAA---AAA-------CTGANTGTAT-TGAAGATGATTATTTT---AAAGTAAC--ATAATC-TTGAAA--GGGGGC-GGGGTAAA-AAGGCATC-NCGAATTACA-CCANGAATTTCGTGGTATGT-AGGGT-AAT-GT----ACCGNATATCAATCAAAGT-ATGGAAAAGGGATATT-TTAAAAACACGTAAA-T-ATTTATGT-TT-TC-CCG-G-CGANGTAANCA-CAACAGTATTCTTCTTTAAGAGGAGAGAAAATGTTGTGTGCTCATCCTTCGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTTTAAAACTCGGGTTCACAATTACGNANTTCTTGAAAATCTCTACTTCATATTTTTTTTTTTTTTAGACAAA-TCG-GGTCTAAGTCC--GG-A-AAAGAG---CT------ATCGAGCATCT-TTATTAGAT-----AT-AAAATGACAAAATGAATGTAGTT-------GTTTTGTTGTTTTT-------GGGG-----TTTTTTTGGGGGGGGGGGC-------ATTGTTG-T-TGTTTCGGTTTTNATTTTTTTTTTATTTATGTGG----ATATA---TATATAT-ATGAAG----ATGAATCGGTTGATTTATCAAATAC-----------------------TGA-AG-CTGAAT-----TTTTGC--TTTGAATTTATCAATA-TCTTA--CGT-ATTTC-TA-AATGTTTGCATG-CTTTCA--AAACACATAAAA--AAAATAAAGG-------ATGTTT-CA-GCCTT-----TT------A-----AAATTCTAAA-TGA-T--AG---GGAGGGGG------GGG-----GTCTTCAATCTAGCCAAGT-GAGACGATTCTTCGT-AAAACCTGTGT-T--TTC-----AAACTCGG---ATATTTCAA--------AACTCGGACGCAT-GGGAAGACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATACAAAATCTAATACTTTATCAGGTTACATGTACACTGAGATGTGCATTCACTGAGATGTGCATCTTCCAACGAATTAAATGGTATATAAAATGATTGTAAATTAAAT
Unaligned ( gi|14 ): TGAGAAATTCTTAAATAAACTGTGTATGCAAACCTTCTAGGCATATAGGACGACAACAATATTACGCGAGACTTGAAACCACGCTATTTTACATTGTACCAAG
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 111111111 111111 333333333 1111 11 22222222222 1111 222222 111 111 33 111 4444444444444444444 111 111 22 11 1 1 1 1 11 1 1 11 1 2222 1 1 1 11 222 1 1 1 22222 222 1 1 111 11111111111111111111111111 1 333333333 1 4444444 999999999999999999999 444444444444 333 111 222222 111 33333333333 4444444444444444444444444 11 22 1 2222 1111 11 66666666666666666666666666666666666666666666666666 1 111111111 44444444444444 1 1 8888888888888888888888888 44444444 1
lowQualScore : 4 8 4 0 9999 444444444 888888 4 999 111111111 66 888 0000 9999 00 8 4 66 99 4 4 0 0 5 0 5 33333333333 66 5 5 77 0000 33 0 5 5 2 5 111111 5 111 6 6 6 111 00 000 5555555555555555555 1 6 3 222 99 7 99 6 666 44 6 77 6 1 1 6 44 6 99999 2 7 999 6 6 7 8 0 3 0 0 0 00 0 1 1 0 11 7 5 4444 5 5 5 77 111 5 5 5 1 1 77777 000 5 3 555 11111111111111111111111111 3 3 666666666 7 2 7 3333333 7 000000000000000000000 888888888888 444 111 888 7 0 555555 777 33333333333 4 66 8 1 9999999999999999999999999 8 8 11 0 44 0 11 88 1 6 3333 0 8 1111 0 44 11 0 11111111111111111111111111111111111111111111111111 0 999999999 6 22222222222222 44 3 6 3 0 7 3 7 4444444444444444444444444 88888888 3
lowQualScore : . . . . .... ......... ...... . ... ......... .. ... .... .... .. . . .. .. . . . . . . . ........... .. . . .. .... .. . . . . . ...... . ... . . . ... .. ... ................... . . . ... .. . .. . ... .. . .. . . . . .. . ..... . . ... . . . . . . . . . .. . . . . .. . . .... . . . .. ... . . . . . ..... ... . . ... .......................... . . ......... . . . ....... . ..................... ............ ... ... ... . . ...... ... ........... . .. . . ......................... . . .. . .. . .. .. . . .... . . .... . .. .. . .................................................. . ......... . .............. .. . . . . . . . ......................... ........ .
lowQualScore : 4 9 4 9 4444 111111111 222222 4 888 000000000 11 888 6666 4444 66 9 4 11 11 4 4 7 1 0 4 0 88888888888 99 0 0 00 1111 11 7 7 7 3 7 999999 7 777 7 7 7 777 00 888 7777777777777777777 0 7 5 888 22 3 22 7 555 33 7 77 7 0 7 7 00 7 33333 5 5 000 7 7 8 0 0 2 0 0 0 22 0 0 0 0 00 3 5 0000 0 0 0 55 555 0 0 5 0 0 00000 555 5 3 333 77777777777777777777777777 7 3 000000000 3 0 3 3333333 3 000000000000000000000 777777777777 000 000 000 3 2 888888 555 55555555555 6 66 0 4 2222222222222222222222222 0 0 00 8 88 6 66 88 4 0 2222 8 0 8888 8 00 00 8 99999999999999999999999999999999999999999999999999 0 555555555 5 55555555555555 00 2 7 3 7 3 3 3 0000000000000000000000000 33333333 3
consensus : TGT-TTG-GGT-TGGAAGACA----ATA-----TA--GAGACAAA-ATT--TGAGCGA-TTTACCCG-AT-------T-ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGAG----G--G-G-A--TGC-AC-TA-CTGACATCGCAGATCCACTGTTTGC-CGCATTCCA-GC-----------G--AC-G-TGAT-AAATCTAAC---GCGGTATTCTCGAGGAAGTATCCGTGT-TTT-GTTT-TA--T--TTA-TTTTATTTGAT---T-ATTT-C-AGT---TTGTATT-ATATATCGTATAAC--------AA-AA-A--CTGANTGTAT-TGAAGATGATT--ATTTT--AAAGTAA--CATAATC-TTGAAA--GGGGGC-GGGGTAAA-AAGGCATC-NCGAATTACA-CCANGAATTTCGTGGTATGT-AGGG-TAAT-G--T--ACCGNATATCAATCAAAGT-ATGGAAAAGGGATATT-TTAAAAACACGTAAA-T-ATTTATGT-TT-TC-CCG-G-CGANGTAANCA-CAACAGTATTCTTCTTTAAGAGGAGAGAAAATGTTGTGTGCTCATCCTTCGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTTTAAAACTCGGGTTCACAATTACGNANTTCTTGAAAATCTCTACTTCATATTTTTTTTTTTTTTAGACAAA-TCG-GGTCTAAGTCC--GG-A-AAAGAG---CT------ATCGAGCATCT-TTATTAGAT-----AT-AAAATGACAAAATGAATGTAGTT-------GTTTTGTTGTTTTT-------GGGG-----TTTTTTTGGGGGGGGGGGC-------ATTGTTG-T-TGTTTCGGTTTTNATTTTTTTTTTATTTATGTGG----ATATA---TATATAT-ATGAAG----ATGAATCGGTTGA-TTTAT--CA-A-------AT-AC---T---GAAG-CTGAAT-TTTTGC--TTTGAATTTATCAATA-TCTT-ACGTTATTTCT--A-AATGTTTGCATG-CTTTCA--AAACACATAAAA--AAAATAA--A----GGA---TGT-TT--CA-GCCTT-----TT------A-----AAATTCTAAA-TGA-T--AG---GGAGGGGG------GGG-----GTCTTCAATCTAGCCAAGT-GAGACGATTCTTCGT-AAAACCTGTGT-T--TTC-----AAACTCGG---ATATTTCAA--------AACTCGGACGCAT-GGGAAGACA
Reference ( family-4448 ) : TGT-TTG-GGT-TGGAAGACA----ATA-----TA--GAGACAAA-ATT--TGAGCGA-TTTACCCG-AT-------T-ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGAG----G--G-G-A--TGC-AC-TA-CTGACATCGCAGATCCACTGTTTGC-CGCATTCCA-GC-----------G--AC-G-TGAT-AAATCTAAC---GCGGTATTCTCGAGGAAGTATCCGTGT-TTT-GTTT-TA--T--TTA-TTTTATTTGAT---T-ATTT-C-AGT---TTGTAT--ATATATCGTATATC--------AA-AA-A--CTGANTGTAT-TGAAGATGATT--ATTTT--AAAGTAA--CATAATC-TTGAAA--GGGGGC-GGGGTAAA-AAGGCATC-NCGAATTACA-CCANGAATTTCGTGGTATGT-AGGG-TAAT-G--T--ACCGNATATCAATCAAAGT-ATGGAAAAGGGATATT-TTAAAAACACGTAAA-T-ATTTATGT-TT-TC-CCG-G-CGANGTAANCA-CAACAGTATTCTTCTTTAAGAGGAGAGAAAATGTTGTGTGCTCATCCTTCGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTTTAAAACTCGGGTTCACAATTACGNANTTCTTGAAAATCTCTACTTCATATTTTTTTTTTTTTTAGACAAA-TCG-GGTCTAAGTCC--GG-A-AAAGAG---CT------ATCGAGCATCT-TTATTAGAT-----AT-AAAATGACAAAATGAATGTAGTT-------GTTTTGTTGTTTTT-------GGGG-----TTTTTTTGGGGGGGGGGGC-------ATTGTTG-T-TGTTTCGGTTTTNATTTTTTTTTTATTTATGTGG----ATATA---TATATAT-ATGAAG----ATGAATCGGTTGA-TTTAT--CA-A-------AT-AC---T---GAAG-CTGAAT-TTTTGC--TTTGAATTTATCAATA-TCTT-ACGT-ATTTCT--A-AATGTTTGCATG-CTTTCA--AAACACATAAAA--AAAATAA--A----GGA---TGT-TT--CA-GCCTT-----TT------A-----AAATTCTAAA-TGA-T--AG---GGAGGGGG------GGG-----GTCTTCAATCTAGCCAAGT-GAGACGATTCTTCGT-AAAACCTGTGT-T--TTC-----AAACTCGG---ATATTTCAA--------AACTCGGACGCAT-GGGAAGACA
gi|1 : TGT-TTG-GGT-TGAAAGATA----ATA-----AA--GAGACAAA-ATT--TGAGCGACTTTATCCA-AT-------T-ATAT--AATAGT---TGCAACAG----CAGAAAAGAGATATATTGAG----G--G-A-A--TGC-ACTTA-CTGATATCGAAGATCCACTGTTTGC-CGCTTTCCAGGC-----------G--AC-G-TGATAAAATCTAAC---GCGGTATTCTCGAGGAAGTATTCGTGT-TTTCGTTT-TA--T--CTA-TTCAATTTGAG---T-ATTT-C-AGT---TTG
gi|1 : -AA-T--CTAATTGTAT-TAACGATGATT--TTTTTTTAAAG-AAGCCATACTGATTGAAAAAGGGGG--GGGGTTAA-AACGCATC-CCGAATTACA-CCACGA-TTTCGTGGTATGT-AGGG-TAAT-GGTT--A--GTATATCAAAGAACGT-AGGGTAACGATATATA-TCTAAAGCATGTAAA-T-ATTTATGTATT-TC-TCG-G-CGATGTAACCA-CAACAATATTCTTCTTTAAAAGGAGAGAAAATGTTGTGTACTCATTCTTCGCGTTG-TT-TAATAAGATGCTTGC--GAAAATATGTATTTTTAAAACT-GGGTTCACAATTACGCAATTCTTGAAAATCTCTACTTC-TATTTTTTTTTTTTTTAGACAAAGTCGCAGTCTAAGTC-------------------------ATCGAGCATTT-TAATTAGAT-----AT-AAACTGACAAAATAAATGTAGCT-------GTTTTGTTGTTTT---------GGGTTTATTTTTTTTGGGGGGG-------------TTGTTG-TGTGTTTC--TTTTCATTTATTTTTTATTGATATAATTATATATA---TATATAT-ATAAGA----ATGAATCAG--AA-TATAT---A-A-------A-------T---GAAG-CTCGAT-TTTTGC--TTTGAATTTATCAATG-TCTT--CGT-ATTTCTA-A-AATGTTTGCATG-CTTTAA--AAACACATAAGA--AAAATAAACA----AGAATTTGT-TT--CA-GCCTT-----TTAAAAAAA-----AAATTTTAAA-TGATT--AGCGAGGAGGGGG------GGG-----GTCTTC-ATCTAGC--AGTAGAGACAACCTTTCGTAAAAATCTTTGT-TTATTCAAACAAAACTCAGCCAATATTTCAAGATTAAAGAACTCGGACGCATAGAGAAGACActtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatctaattgtattaacgatgatttttttttaaagaagccatactgattgaaaaagggggggggttaaaacgcatcccgaattacaccacgatttcgtggtatgtagggtaatggttagtatatcaaagaacgtagggtaacgatatatatctaaagcatgtaaatatttatgtatttctcggcgatgtaaccacaacaatattcttctttaaaaggagagaaaatgttgtgtactcattcttcgcgttgtttaataagatgcttgcgaaaatatgtatttttaaaactgggttcacaattacgcaattcttgaaaatctctacttctattttttttttttttagacaaagtcgcagtctaagtcatcgagcattttaattagatataaactgacaaaataaatgtagctgttttgttgttttgggtttattttttttgggggggttgttgtgtgtttcttttcatttattttttattgatataattatatatatatatatataagaatgaatcagaatatataaatgaagctcgatttttgctttgaatttatcaatgtcttcgtatttctaaaatgtttgcatgctttaaaaacacataagaaaaataaacaagaatttgtttcagccttttaaaaaaaaaattttaaatgattagcgaggagggggggggtcttcatctagcagtagagacaacctttcgtaaaaatctttgtttattcaaacaaaactcagccaatatttcaagattaaagaactcggacgcatagagaagaca
gi|10 : tgtttgggttgaaagataataaagagacaaaatttgagcgactttatccaattatataatagttgcaacagcagaaaagagatatattgagggaatgcacttactgatatcgaagatccactgtttgccgctttccaggcgacgtgataaaatctaacgcggtattctcgaggaagtattcgtgttttcgttttatctattcaatttgagtatttcagtttgcttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncT-TTG-GGT-TGAAAGATA----ATA-----AA--GAGACAAACAT-----AGCGA-TTTACC-A-AT-------T-ATAT--AA--GT---TGCAAC-G----CA-AAAAGAGATATATTGAG----G--G-G-AGATGC-AC-TA-CTGACATCGAAGATCCACTGTTAGC-CGCA-TCCA-GC-----------G--ACTG-TGAT-AAATCTAAC---GCGGTATTCTCGA-AAAGTATTCATGT-TTC-G-TT-TA--TGATTA-TTTTATT
gi|11 : tactgtGTGA----ATGTAAAATATATTT-TTGCAA----GCGAATTGGAGGA-TAAAT--TA-A-------AT-AT---CATCGAAGGCTGAAT-TTTTGC--GT-GGATCTATCAAT--TCTT-ATTTTATTTCT--A-AATGTTTGC----TTTTCATCAAATAC-CAAAA--TCAATAA--AAG--GAA---TGT-TT--CA-gagatttttacatatttccta
gi|12 : tataaaatctaatatcttattagatttagtattggaatgactggcaaa-TTG-AGT-TGGATGACATGAAATAACATTTT--GAGCTAA---TTGCTGAGCAA-TTTGTCTG-AT-------T--TATTAAATAGC---TGCACCAG----TAGAGAAGAGATAAATTG-G----G--G-G-A--T---AC-TA-CGGGCGTCGCAGATGCATTGagc
gi|15 : tcTATGT-AGGACTAAT-G--T--ACCGAATATCAATCAAAGT-ATGGAAGAGGGATATT-TTAAAAACACGTAAA-TAATTAATGT-TT-TC-CCATG-CGAGGAAAACA-CAAgt
gi|16 : GATATATTGAG----G--GAG-A--TGC-AC-TA-TGGACATCGCAGAACCACTATTTGT-CGCATTCCA-GC-----------G--AC-G-TGAT-AAATCTAGC---GCGGTATTCT
gi|17 : TGTCTTG-GCT-TGGAAGACA----TTA-----CA--GAGACAAA-A-C--TGAGCGA-TTTACCTG-AT-------TGATAT--AATAa
gi|18 : acATGT-AAGG---AT-A--TTAGCCGAATATCAATCAAAGTTATGGAAGAGGGATATT-TTAAAAACACGTAcattgtagtt
gi|2 : T-TTG-GGT-TGAAAGATA----AGA-----AA--GAGACAAA-ATT--TGGGCGA-CTTATTCA-AT-------TCATGT--AATCGT---TGCAACAG----CAGAAAAGAGATATATTGAG----G--GTA-A--TG--AC-TA-GGGGTATCGAAGATTCACTGTTTGC-CGCGTTCC--GC-----------G--AC-GTTGAT--AATCTAAC---GCGGTATTT---GGGAAGTATTCG--------GTTTGTG--T--TTA-TTCTATTGAATTGGT-ATTTCC-AGTTTCTTGTTG--ATATATC-TATGAC--------AA-TT-A--CTAATTG--T-TGGAGATGTTT--TTTTT--AAAG-AA--GATAATG-TTGAAA--GGGGG--GGGTTAAA-AGAGCATT-CCGAATTTTATCCAAGAATTTTGTGGTATGT-AGGG-TAATGG--T--AGTG-ATATCA---AGAGT-AGGGTAAGGATATATT-CT---AGCATGTAAACT-ATTT-TGT-TTCTC-CTG-GCCGATGTAACCAGCAAC--TA-TCTTCTTTAAG-GGAGAGAAA----TGTGTG-TCATCTTTTGCGTTGGTTGTAATAAGATGCTTGCCCGAAAATATGTATTTT---AACTCGGGTT-AC-ATTACGAACTTC-----AAT---TACTTCATATTTTTTTTTTTTGTAGACAAA-TCG-GGTCTAAGTCC--GGAA-AAAGAG---CT----------------T-TTATTAGAT-----AT--AAATG--AAAAT-AATGT-GTT-------TTTTTGTTTTTTTTGGGGGGGGGGG-----TTT------GGGGGGGGGT-------ATTGTTG------TTTGGTTTTGA-TTTTTTTATGTTTATGT-G----ATATA---TATATAT-G-GAAGC---ATGATTCAGTTGA-TTTATAGTATA-------ATAAC---T---GAG---TGATTGTCTTGCCTTTTAAATTTTGCAGTATTCTT-ACGT-ATTTCT--T-AATGTTTG-ATG-CTTT-A--AAACA-ATAACA--AAAATAA--ATACCAGA---TGTGTTTGCA-GCTTT-----TT------A-----AAAATCTAAA-TGA-TGAAG---GGGGGGGG------GGGGGAGTGTCTTCAATCTAG
gi|3 : actgtGAATTCGTTGA-TTTAT--CA-A-------AT-ACGATT---GAAG-CTTAAT-TTTTGT--TTTGATCTAAGCAAT--TCTT-ACATTATTTGT--ATAATGCTTGCATGATTTTCA--ACAGATATAAAA--AAAA------------A---TAT-TT--CA-AGCTTACTGGTT------A-----T--TTTTAAA-AGA-T--AG---GAAGGGGT------G--------TCTCCAGCCTAGCCAAGT-GAGAGGATTCT--GT-AAA-CTTGTGTAT--TTC-----AAACTCGG---ATATTTCAA--------AATTTGGACACAT-GGGAAGACA
gi|4 : TTTATTGAGA-TTTTTACAT-ATTTCCTAA-AATGTTTGCATG-CTTTCC--AA-CACATAAAAGAAAAATAACAA----GAA---TAT-----CAAGCCTT-----TT------TTTTTTAAATTCCAAAATGA-T--AT---G-AGGGTGTGTGTTGGG-----GTC--CAATCTAGCCAAGT-GAGACAATTCTTCGT-AAAACCTGT-------------------------ATATTTCAA--------AACTCGGACGCAT-GGGAAGACAactagtagtatgcaatcataaaacaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatcaaataaataaaaacatgcattaaatctaacattctttacattgcattacattgaagtgtacaatgtacatcttccaacgaatagattgtatgcatgtagtgattgtataaaataacaaacataatgagattcaacgagagcttggattttaatgtttacaaattaattcatcaattatcctcagattatgaagacagagtgtatgttcagatgtagcagttatcatctggtt
gi|5 : t-TTG-GGT-TGGAAGACA----ATA-----TG--GAAACAAA-AAT--TGAGCGA-TTTACCCT-AT-------TGATAT--TATTAC---TGCAACAGTGCTCAGCAAAGAGATATATTGAG----G--G-GGA--TGG-AC-TA-CCGACA--GCAGATCCACCGTTTGC-CGCAATCCA-GCCCTGGCCTGGAGCTAC-G-TGAT-AAATCTAATTATATGGTATTCTCAAGGAAGTATCCATGT-TTT-GTTT-TAAATAATTA-TTTTATTTAAT---T-TTCT-C-ACT---TTGTATTGATACAT-GTATATCTAGTTAATAACAATA--CTGATTGTAT-GGAAGATGATT--ATTTC--AAAGTAG--CATAATC-TTGAA---GGGGGC-AGGGTAAA-AAGGCATC-ATGAATTACA-CCATGAATTTCGTGGTATTT-AGGA------G--T--ACCACATAT--------AT-ATGGAGAAAGGATATTATTAAAAACTCGTAAA-T-AATTATGC-AT-TCTCCT-G-CAAAGTAAACA-CAACAGTATTCTTGTTTAAagtaatatactattacgcaaccatcaaaccacactacttacattgtgccaagatgaataaagccatgcatgaacaatctaacattctacatgtatcaaattgcattatacatcttccaacgaataaattgatatttaacatgaatatataataataaacatgaagagattcaaacgagatcttgaagttaaaattgttcaacaaacaaattttaaaattaataaatcaaatattgtcagattatcgaagaccgaatttttgttcagatctatgcagttacatgtatcattttgttt
gi|6 : ta-TTG-GGT-TGGACGACA----ATA-----TA--GAGA-ATA-TTT--TTAGCGA-TTTACCCA-AT-------TTATAT--AATAGT---TGCAATAG----CAGAA--GAGATCTATTGAGAGGGG--G-G-A--TGC-AC-CA-CTTACATCGCAGATCCACTGTTTGC-CGCATTCCA-GC-----------G--GC-G-TGAT-AAATTTAAC---GCGGTATCCTTGAGGAACTATTCATGT-TTT-GTTT-TA------------------AT---T-ATTT-C-AGT---TTGTAT--ATCTA----ATA----------AA-AATA--CCGACTGTAT-GAAAGATG----------------TAG--CATAATC-TTG-AA--GGGAGCGGGGGTAAA-AAGGCATC-CCGAATTACA-CCATGGA-TTCGTGGTATGTAAGAG-TAAT-G--T--ACCGTATATCAATCAAAGT-ATGGAGAAAGGATATT-TTTAAAACATGTAAA-
gi|7 : tgccT-TTGAGGTATGGAGAAAA----ATA-----TATAGCGACAAA------TGAGAGA-TT-ACCCATATAAA----T-ATAT--AATAATACATGCAACAG----TAGCAAGAAGACATGTTGAA----GAAG-G-G--TGTTAC-TAACTCACACCGCAGATGCACTGTTTGAGCGTATTCCA-AC-----------G--AA-G-T--T-GGATC-AAC-----------CTAGAGGAACTATCCGTGTGTTT-GCTT-TA--T--ATAATCTTATTTGAT---TTATTT-CCAGT---TGGTATC-ATATGTCGTATAAC--------AA-AA-AACCTGAATGTATCTGAAGATGATCTAATTTC--AAAGTAA--CATAA-C-TTGAA-----GGAT-GGAGTAAATCAGGCATCTACAAATTACA-CCAGG-ATTT
gi|8 : tctT-TTGAGGT-TGGAGAAAA----ATA-----TA--GCGACAAA-AAT---GAGAGA-TTTACCTC-ATATAAATAT-ATAT--AATACA---TGCAACAG----TAGCAAGAAGATATGTTGAA----GA-G-G-G--TGT-AC-TA-CTCACACCGCAGATGCACTGTTTGA-CGTATTCCA-AC-----------G--AA-G-TGAT-CAACCTA----------------GAGGAACTATCCGTGT-TTT-GCTT-TA--T--TAA-TCTTATTTGAT---T-ATTT-C-AGT---TGGTATTCATATGTCGTATAAC--------AA-AA----CTGAATGTAC-TGAAGATGATT--AATTT--AAAGTAA--CATAATC-TTGAAA--GGATG--GAGGTAAT-CAGGCATC-ACGAATTACA-CCAGGAATTTTGgaga
gi|9 : actcTTTTTTTTTTTTTGAGACAAA-TCG-G-TCAAAGTCCACGG-ACAAAGAAACACTTTACAAATCGAGCATCTATTATTAGATTAATAATTAAAATGACAAAATGAATGTAGTTACAACAAGTGTTTTTG-TTTT-------G-----------TTTTGGGGGGGGGGGCGGGTGAAATTGTTGTT-TGTTTTGATTTTTTTTTTTTTTTTATTT---TGG----ATATA---TATTTATAATAAAGAGATATAAATCAGTTGATTTTAT--CA-ATATTAGTAT-AC---T---GAAG-CTGAAT-TTTT-T--TTTG--TTTAaga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATACAAAATCTAATACTTTATCAGGTTACATGTACACTGAGATGTGCATTCACTGAGATGTGCATCTTCCAACGAATTAAATGGTATATAAAATGATTGTAAATTAAAT
Unaligned ( gi|14 ): TGAGAAATTCTTAAATAAACTGTGTATGCAAACCTTCTAGGCATATAGGACGACAACAATATTACGCGAGACTTGAAACCACGCTATTTTACATTGTACCAAG