lowQualScore : 11111111111111 1111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111 111111111
lowQualScore : 1 1111 2222 22 111111 222 1 22 11111 1 2 3333333333333 1 22 44444444444444 222222 1111 222 1 111111 11 2222 11 7777777777777777777777777777777 1 222 7777777777777777777777777777777777777777777777777777777777777 111111111 22222222 111 1 222 11 2 333333 1 11 22 00000000000000000000000000000000000000000000000000 1 333333333333333333 22222 111 1 1111 4444444 444444 1 2 11 333333333 1111 1 1 22 1 1 3 11 1 1 1 4 1 999999999999999999999999 1
lowQualScore : 3 88 9999 8888 0 11 333333 77 3 7 333 4 9 1 88 4 8 4 2 5 0 33 5 44444 0 5 3 9999999999999 7 7 6 00 66666666666666 4 000000 0 2222 111 1 5 4 44 1 111111 2 8 2 8888 22 4 2222 8 8 8 8 22 8 9999999999999999999999999999999 2 4 1 333 4 4 8888888888888888888888888888888888888888888888888888888888888 88 55 0 55 777 66 999999999 66666666 111 5 55 666 77 1 8 44 6 4 8 333333 5 6 9 44 99 22 33333333333333333333333333333333333333333333333333 6 6 666666666666666666 0 3 77777 999 55 3 4444 8888888 555555 6 5 3 44 999999999 6666 2 7 0 99 6 6 0 33 0 5 7 6 0 7 6 222222222222222222222222 5
lowQualScore : . .. .... .... . .. ...... .. . . ... . . . .. . . . . . . .. . ..... . . . ............. . . . .. .............. . ...... . .... ... . . . .. . ...... . . . .... .. . .... . . . . .. . ............................... . . . ... . . ............................................................. .. .. . .. ... .. ......... ........ ... . .. ... .. . . .. . . . ...... . . . .. .. .. .................................................. . . .................. . . ..... ... .. . .... ....... ...... . . . .. ......... .... . . . .. . . . .. . . . . . . . ........................ .
lowQualScore : 3 66 0000 9999 6 99 222222 88 9 3 444 4 1 9 33 4 9 4 5 0 0 99 0 66666 0 1 5 3333333333333 3 3 7 22 99999999999999 1 999999 4 1111 666 9 0 4 77 9 444444 9 9 1 1111 22 4 1111 9 8 9 9 22 9 9999999999999999999999999999999 0 0 6 666 4 0 9999999999999999999999999999999999999999999999999999999999999 77 55 8 44 222 11 444444444 77777777 333 3 55 999 77 0 0 00 0 4 5 000000 0 0 0 44 22 00 66666666666666666666666666666666666666666666666666 0 0 222222222222222222 6 2 22222 000 88 3 2222 0000000 000000 7 0 0 55 000000000 0000 5 3 0 22 0 0 2 88 0 0 0 0 0 0 0 000000000000000000000000 0
consensus : CCTGCCAAA-TATTAACATGG-GCCTTTTTGTN-AGTTTTAATTTTCTAATAAAGCAAA-----TTTCCCCATTGTTGTAACACATATCTTGTCA--TG-GGTTGACTG-TA-CTTTAT-GATT-ATNA-AGAG-TTCTTTGTACA-TAGATG-CAAA--A--TATA-GCTTTGAATTAC-AGTACACAGCAATAT----------CCTATCACAATGTT-TC-TGTATCTTTTCAGTTACAGTTGTAGTTGCACTAGAATCCAGTAGAAAATTTA-GA--AAACGC----CACA--GAGTAGAAATAAATTGATTAAAGAGTGTTCAAAGATGGAAAC-AAAGCAAGATA-GACATGGTTTAACTT--CAG-TAAGA-GACAGTAGAAATAG---TAA--TGGTG-GTGGTAGTGGTGA-TGGTAAAAACAGTAGTG-ATAGTGGG-AA--CA-GTG----GCGGCG----G---G--G--------AC-TGCA-TCCAAAAGAGTGTG-AAG------------G-------------TTCC--------------ATNC-A-CTGC------ACTAAAGATGAT-CCAAGT--GCAGG-GAACC--T--GA----T---ATCA-----CCAAAA-G-ACTTTGCA--TCCTG-GAATA-CACTATTACAAGCTGC-AAAAATAAGAAAA--CATAC-TGCAGTCCTACATA-NTGCA--GATAACACCTCCAGA----AGGATGAAG-TGCCATGCTATCTCTTAC--TACCACAGGACAATGCAGAAAAGCATATATTTTCCNNGAAATAAAACACTG-ACTGCAATATTGAGCNAAGA-GCAG----ACGCA---A---GAGGAAAA-TGT-AG-TGGAAGAAAGTAGAAGGCCT---------CAGACCCCCCT--CGGTATNCCCAGGGCATATTCTAATGATTATCAAGTGCAT-TTTTGTGACNAAACAATCCAAATATATCAAAAGGAA-AATACACGAGTGTCCCTTATAA--TGCTCAGTTTTTTGCGGTCAAGGATGCTAA
Reference ( gi|1 ) : CCTGCCAAA-TATTAACATGG-GCCTTTTTATG-ATTTTTAATTTTCTAATAATACAAA-----TTTTCCCATTGTTGTAACACATATCTTGTCT--TG-GTTTGACTG-TA-CTTTAT-GATT-ATCA-AGAG-TTCTTTGTACT-TAAATG-CAAA--A--TATA-GCTTTAAATCACAAGTACACAGCAACAC----------CCTATCACAGTGTT-TA-TGTAT--------------TTGTAGTTGTACTAGAATCCAGTAGAAAATTTT-GA--AAACGC----CACC--GAGTAGAAATAAATTGATTAAAGAGTGTTAAAAGATGGAAAC-AAAGCAAGATA-GACATGATTTAACTT--CAG-TAAGA-GACAGTAGAAATAA---TAA--TGGTG-GTGGTACTGTTGA-TGGTAAAACCAGTAGTG-ATAGTGGG-AA--CA-GTT----GTGATG----G---G-----------AC-TGCA-TCCAAAACATTGCG-AAG------------G-------------TT----------------ATCC-T-TTGT------ACTAAAGATGAT-CCAAGT--GCAGG-AAACC--T--GA----T---TTCA-----CCTAAA-G-ACTTTTCA--TCCAG-GAATA-AATTGTTACAAGCTAC-AAATATAAGAAAA--TATGC-TGCAGTCCTGCATA-TTGCA--GAC-ACAACTCC--A----AAGATGAAG-TGCCGTG-TATCTCTTATATTACCGCA-GACAATACAG-AA-GC--ATATTTACCTTG-AATAAAACACTGGACT-CAATAGTGAGCCAAGA-GCAG----ATGCA---A---GAGGAAA--TGCCAG-TGTAAGAGAGTAGAAGGCCTTTAGCTATACAGATCCTTTC--CGGTATCCTCAGGGCCTAT-CTA-TGAT-ATCAAGTGCATATTTTGTGACCAAACAATCAAAATATTTTAAAAGGAAGAATACACGAGTGTCCCTAACAAAGTCCTCAG--TACTGCAATCA--GATGATAACCT
gi|18 : CCTGTCAAAATAT--ACATGGTGCTTGTGTAT-----TTTAATAATCTAATCAAGCAAA-----TT--CCCATT-TTGTAACACAT---TTGTTTCATG-GAT-GACT--TA-CTTTATTGATT-ATCA-AGAGTTTCTTTGTACCAAAAATG-CAAA--AATTATAGGCTTTGAATTAC-AGTACACAGCA
gi|17 : catCCTGTCAAAATAT--ACATGGTGCTTGTGTAT-----TTTAATAATCTAATCAAGCAAA-----TT--CCCATT-TTGTAACACAT---TTGTTTCATG-GAT-GACT--TA-CTTTATTGATT-ATCA-AGAGTTTCTTTGTACCAAAAATG-CAAA--AATTATAGGCTTTGAATTAC-AGTACACAGCA
gi|7 : catTGCCAAA-TATTAACACGG-GGCTTTTTGCA-AGTTTTAATTTTCTAATAAAGCAAA-----ATTCCTCATTGCTGTAGCACATATATTGTCA--TG-GGTTGACTG-TA-CTTTAT-GATT-ATGA-AAAG-TTCTTTGTACT-T-GATG-CTAA--C--TATA-GCTTTAAATTAC-AGTACAAAGCAATAT----------CCTATCACAATGTT-TC-TGTGTCTTTTCAGTTACAGTTGTAGTTGCTCTAGAATCTAGTGGAAAATTTA-GA--AAATAC----CACA--GAGTAGAAATGAATTGATTGAAGAGTGTTCAAAGATGGAAAC-AAAGCAAGATA-GGAATGGTTTAACTT--CAG-TAACA-GACAGTAGAAATAA---TAA--CGGTG-GTGGCAGTGGAGA-TGGTAAAACCAGTAGTG-ATAGTGGG-AA--CA-GTG----ACGGTG----C---A-----------AT-TGCA-TCCAAAAGAGTGCG-
gi|13 : GCCAAA-TATTAACATTG-GACTTTTTGTG-ATTTTTAATTTCCTAATAAAGCAAA-----TTTCCTCATTGTTGTA---CATATCTTGTCA--TA-GGTTGACTT-TA-CTTTAT-AATT-ATCA-AGAG-TTCTTTGTACA-TATATG-CAAA--A--TATA-GCTTTGAATTACG-GTACACAGCAATATATATATATATCCTACCAAAATGTT-TC-TGTATCTTATCAGGTACAGTTGTAGTTGCATTAGAACCCAGTgt
gi|10 : caCAAA-TATTCACATGG-AC--TTTTATCTAGTTTTAATCTTCTAATAAGCCAAA-----ATTCCTCATTGTTGTAACACAT-TCTTGTCA--TGTGCGTGA-TGTTATTTTTAT-GATTAATGATAGAG-GTCTTTTTATA-TAGATGCCAAACTA--TATA-GCTTTAAATTACAG--ACACAGCTA-AA----------TCTATCACAATGTTCTGCTGTCT--------------TTGCAGT--TACAAAAGTCC-GTAGAAAATTTA-GAACAAATGC----CAATAAGAGTAGAAATGAATTGATTAAAGAG
gi|16 : AAA-TAGTAACATGGAGC--TTTTGCG-ATTTTAAATTTTCTAATAAAACAAAATTAATTTTCCCATTGTTGTAACACATATCTTGTCA--TG-GTTTTACTG-TA-CTTTAT-GATT-ATCA-AGAG-TTCTTTGTACA-TAAATG-CAAA--A--CAGA-GCTTTA------AAGTACACAGGAAat
gi|9 : tAATATGG-GGCTTTTTGTT-CGTTTTAATTTTCTAATAAAGCAAA-----ATTCCTCATTGTTGTAACACATATCTTGTCA--TG-GGTTGACTG-TA-TTTTAT-AATT-ATGA-AGAG-TTCTTTGTAC--TAGATG-CCAA--A--TATA-GCTCTGAATTAC-AGTACACAGCAATAT----------CCTATC-CA-CGTT-TC-TGTATCTTTTCAGTTACAGTTGTAGTTGCACTA-ATTCCAGTAGAAA-----------------------------------TAAATTGATTAAAGAGTGTCCATTGATGGAAACAAAAGTAAGATG-GACATGGTCTAACTT--CAG-aatcgt
gi|4 : c-----TTTTCCTATTCTTGCAACACATATCTTGTCA--TG-GTTTGACTG-TA-CTTTAT-GATG-AAAA-AGAG-ATATTTGCACA-TAAATG-CGAA--A--TATA-GCTTTAAATCAC-AGTACACAGCGATAT----------CCTATCACAATGTT-TC-TGTATATTTTCAGGTACAGTTATAATTGCACTTGAATCAAGTAGAACATTTA-GA--AAACGC----TACA--GAGTAGAAATAGATTGATTAAAGAGTGTTCAGATATGGAAAC-AAATCAAGATA-TACATGG-TTAACTT--CAG-TAAAA-GACAGGTGAAATAATGGTAG--TGGTG-GTGGTAGTGGTGA-TGGTAAAAGCAGTAGTG-ATAAAGGA-AA--CA-GTG----ACGGTG----C---A-----------AC-TGCA-TCAAAAAGAGTGTG-ATG------------GTTTCCACAATGCATT----------------ACCC-A-CTGC------AC-AAAGACGAT-CCAAGT--GCAGG-GAACC--T--GA----T---ATCA-----TCAAAA-G-ACTTTGCA--TCCTG-GAATA-CACCATAACAAGCTGC-AAA---AAAAAAAC-CATAC-TGCA
gi|23 : TTGTTGTAACACATATCTTGTCA--TG-GGTTGACTG-TA-CTTTGC-GATT-AT
gi|12 : AGTACACAACAATAT----------CCTATC-CA-TGTT-TC-TTTATCTTTTCAGTCACAGTTTTAGTTGCATTAGAATCCAGTAGAAAATTTA-GA--AAATGCCATGCACA--GAGTAGAAGTAAATTGATTAAAGAGTGTTCAAAGATGGAAAC-AAAGCAAGACATGAT-TGGTTTAACTT--CAG-TACCA-GACAGTAGAAATAA---TAA--TAGTA-GTGACAGTGGTAA-TGGTAA
gi|6 : ttac--------------TTGTAGTTGCACTAGAATCCAGTAGAAAATTTTAGG--AAACGC----CACA--GAGTAGAAATAAAATGATGAAAG-GTGTTCAAAGATGGAAAC-AAAACAAAATA-ACCATGATTTAACTT--C-C-TAAGA-GACAGAAGAAATAG---TAA--TGGTG-GTGGTAGTGGTGATTGATAAAAACAATAGTT-ATAGTGGGAAA--CA-GTG----ACGGTG----A---A-----------ACTTACA-TCCAAAAGAGTGTG-AAG------------G-------------CTCCACA-----------ATGC-A-TTATCTACTCACTAAAGATGAT-CCAAGT--GCAGG-GAACC--T--GA----T---ATCA-----CCAAAA-ACACTTTGCA--TCCCG-GAATACACTTTTTACAG--TGC-AAAAATAAGAAAAACCACAC-TGCAGTCCTAC-TAGGTGCA--GATAACACCTCCAGA----AGGATGAAG-TGCCA-G-CATCTC------TACCACAGGACAATGCAGAAA-GCATATATTTTCCGGGAAATAAAACtattagatatactagacaccagtt
gi|5 : tc--------------TTGTAGTTGCACTAGAATCCAGTAGAAAATTTTAGG--AAACGC----CACA--GAGTAGAAATAAAATGATGAAAG-GTGTTCAAAGATGGAAAC-AAAACAAAATA-ACCATGATTTAACTT--C-C-TAAGA-GACAGAAGAAATAG---TAA--TGGTG-GTGGTAGTGGTGATTGATAAAAACAATAGTT-ATAGTGGGAAA--CA-GTG----ACGGTG----A---A-----------ACTTACA-TCCAAAAGAGTGTG-AAG------------G-------------CTCCACA-----------ATGC-A-TTATCTACTCACTAAAGATGAT-CCAAGT--GCAGG-GAACC--T--GA----T---ATCA-----CCAAAA-ACACTTTGCA--TCCCG-GAATACACTTTTTACAG--TGC-AAAAATAAGAAAAACCACAC-TGCAGTCCTAC-TAGGTGCA--GATAACACCTCCAGA----AGGATGAAG-TGCCA-G-CATCTC------TACCACAGGACAATGCAGAAA-GCATATATTTTCCGGGAAATAAAAC
gi|3 : tcATTGATTAAAGATTGTTCAAAGATGGAAAC-AAAGCAAGATA-GACATGATTTAACTTTTCAA-TAAGAAGGCAGTAGAAATAG---TAAAATGGTG-GTGATAGTGGTAA-TGGTAAAAACAGTAGTGTATAGTGGG-AAACCAAGTTTTTGGGGACG----G---GGGGGTTTTGCAAC-TACA-TCAAAAAAAGTGTG-AGGTTTCCAAAATGCA-------------TT----------------ATTC-A-CTGC------ACTAAAGAAGATTCCAAGT--GC-GG-AAAC---T--GC----T---ATCAGAGACTTTAGATG-ACTTTGCG--TCCTTCGAATA-CACTATTACAAGCTGC-AAA-ATAAGAAAA--CA-AC-TGCAGTCCTAC-TA-TAGCA--GAT-ACAA------------------AG-TGC-ATGCTATCTCTTAC--CACC--A-GACAATGCAG-AAAGC--ATATTTTCCTTG-AATACAACACTG-ACTGCAATATTGAACGAAGAAGCAG----ACGCA---T---GAGGAAAATTG--AG-TGGAAGAAAG--GAAGGCCT---GC----CAGCTCCTCCT--CGATATCCCCAGGACATATTCTAATGATTATCAAGTGCAT-TTTTGTGACCAAACAATCCAAATATATCAAAAGGAA-AATACACGAGTGTCCCTTATAA--TGCTCAGTTTTTTGCGGTCAAGGATGCTAA
gi|2 : cagagaaaactctATTGATTAAAGATTGTTCAAAGATGGAAAC-AAAGCAAGATA-GACATGATTTAACTTTTCAA-TAAGAAGGCAGTAGAAATAG---TAAAATGGTG-GTGATAGTGGTAA-TGGTAAAAACAGTAGTGTATAGTGGG-AAACCAAGTTTTTGGGGACG----G---GGGGGTTTTGCAAC-TACA-TCAAAAAAAGTGTG-AGGTTTCCAAAATGCA-------------TT----------------ATTC-A-CTGC------ACTAAAGAAGATTCCAAGT--GC-GG-AAAC---T--GC----T---ATCAGAGACTTTAGATG-ACTTTGCG--TCCTTCGAATA-CACTATTACAAGCTGC-AAA-ATAAGAAAA--CA-AC-TGCAGTCCTAC-TA-TAGCA--GAT-ACAA------------------AG-TGC-ATGCTATCTCTTAC--CACC--A-GACAATGCAG-AAAGC--ATATTTTCCTTG-AATACAACACTG-ACTGCAATATTGAACGAAGAAGCAG----ACGCA---T---GAGGAAAATTG--AG-TGGAAGAAAG--GAAGGCCT---GC----CAGCTCCTCCT--CGATATCCCCAGGACATATTCTAATGATTATCAAGTGCAT-TTTTGTGACCAAACAATCCAAATATATCAAAAGGAA-AATACACGAGTGTCCCTTATAA--TGCTCAGTTTTTTGCGGTCAAGGATGCTAAtttg
gi|11 : cagagaaaactctAAAGATGTAAAC-AAAGCAA-------TATGATGTAAC------------A-GACA--AGAAATAA---TAA--CGGTG-GCAG-A--GGTGA-TGGTAAAAACAATAGTG-ATGGTGGG-AA--CA-GTG----ACGGTGCTAAG---T-----------AC-TGCA-TCCAGAG-AGTGTG-AAG------------G-------------TTTCCACAATACATT---ATCT-A-CTGC------ACTAATGATGAT-CTATGT--GGAGG-GAACC--C--GA----T---ATCA-----CCAAAA-G-ACTTTGCA--TCCTG-GAATA-CACTATTACAAGGTGC-AAAAATAAGAAAA--CATAC-TGCAGTCTTACATA-tttg
gi|14 : atTA-CACATG-TCTAACTT--CAGATAATT-TACACTA---------------TGCTGTGTGGTA--GATAG-TCGTGGAAC-AGT--TG-AC--TTAA-AA--CA-G------GGGATG----ACACA-----------AC-TGCAATCGAAAAGAGCGTG-AAG------------G-------------TTGCCACAAAGATGCATGATACGT-TTGCTGGCC-ACTAAAGATGAT-CACAGTAGGCAGG-GAACC--TTGAA----TGGATCCA-----CC-AAG-G-A-TCTTGAATTCCTG-GAATA-
gi|8 : G-ATGGTGGA-AA--C----------TGACA----G---GTTGCT------ACATGCA-TCCAAATGAGGGTGTAAG------------G-------------TTCCACTCAATGCAT---ATCC-CACTGC------ACTAAA-ATGA--CCAAGT--GCAGGGAAACCGGT--GGATATT---TTCA-----TCAAAA-G-ACCTG-CA--TCC-T-GCATA-CATTATTACAAACAGC-AAA-ATAAGAAAA---ATACTTGCAGCCTTACATA-GTGCAGGGAT-ACACCTCC--AGATTAGGATGAAGATGCTGT--TGTCTC-----TTACCACAGGACAATGCAG-AA------------------AACAAAA-AC---ACC-CAA----GAGCC-AGA-GCAG----ATGAA---AAATGAGGAAA--TGTCAATTGGAAGA-AAT--GATGCC----------CAGACCCCTTCCTCGGTATACCCAGGcgacat
gi|9 : TT----GTCATG----G---GTTG--------AC-TGTA-TTTTATA-ATTATG-AAGA-----------G-------------TT-------------------C-T-TTGT------ACT--AGATG---CCAAAT--ATAGcc
gi|21 : caatatggggctttttgttcgttttaattttctaataaagcaaaattcctcattgttgtaacacatatc------ACTAAAGATGAG-CTATGT--GCAAG-GAACC--T--GA----T---ATCA-----CCAAAA-G-ACTAAACA--TCCTG-GAATA-CACTATTATAAGGTGC-AActctgaattacagtacacagcaatatcctatccacgtttctgtatcttttcagttacagttgtagttgcactaattccagtagaaataaattgattaaagagtgtccattgatggaaacaaaagtaagatggacatggtctaacttcag
gi|22 : A--TCCTT-GAATA-CACTATTACAAGCCGCAAAAAATAAATAAT--CATAC-TGTAGTCCAACATA-TTTCA--GA
gi|15 : ttgtCACTGAAAT-CAACATTGAGCCAAGA-GCAGTCAGATGTA---A---GAGGAAA--TGTCAG-TGGAAGAAAGTAGAAGGCCTTC-------CAGATCCTCCT--CGGTATCCCCTGGGCCTAT-TTA-TGAT-AGCAAGTGCATATTTTATGAC--AACAt
gi|20 : accataacaagctgcaaaaaaaaaaccatactgAGA-ATAG----ATGCATTCAT--GAGGAAAA-TGT-AG-TGGAAGA-AGTAGAAGGCTT--------GCAGACGCCTCT--CGGTATAC-CAGGGCATAT--TA-TGAT-ATCAAGTGCAT-TTT--TGACAAAA
gi|19 : AGA-ATAG----ATGCATTCAT--GAGGAAAA-TGT-AG-TGGAAGA-AGTAGAAGGCTT--------GCAGACGCCTCT--CGGTATAC-CAGGGCATAT--TA-TGAT-ATCAAGTGCAT-TTT--TGACAAAAaa
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 1 22222 11111 11 11 1111111111 1 1111 11 11 2222222222 555555555555555555 33333333333333333333333333333333333333333333333 111111 222222 1 11 1 11 11 1111 111 1111 111 1 11 111 22222222222 1 1111 3333333 1111 555555555 222 2 1 1 11
lowQualScore : 1 5 44444 9999 11111 22 2 1 0 44 66 4 8 4 1 4 8 11 1 4 66 22 8 4 7777777777 5 0 5 0 1 0 0 66 4444 0 0 4 3 3 00 55 1 8 1 777 11 4 4 8 8 0000000000 666 888888888888888888 4 4 4 4 66666666666666666666666666666666666666666666666 8 55 0 111111 8888 777 333333 8 3 7 7 0 3 5 11 3 4 5 11 44 2 9999 1 6 999 88 4444 4 222 5 7 3 44 66 1 8 000 44444444444 3 0 11 1 2222 1 9999999 5 9999 5 99 777777777 77 55 777 3 3 88 1 3 88 7 7
lowQualScore : . . ..... .... ..... .. . . . .. .. . . . . . . .. . . .. .. . . .......... . . . . . . . .. .... . . . . . .. .. . . . ... .. . . . . .......... ... .................. . . . . ............................................... . .. . ...... .... ... ...... . . . . . . . .. . . . .. .. . .... . . ... .. .... . ... . . . .. .. . . ... ........... . . .. . .... . ....... . .... . .. ......... .. .. ... . . .. . . .. . .
lowQualScore : 4 0 44444 9999 11111 88 5 1 7 88 55 0 0 0 0 4 9 11 7 4 11 22 9 0 5555555555 0 1 7 7 3 7 0 99 0000 8 8 0 6 3 00 66 6 0 0 000 00 0 0 0 0 6666666666 222 333333333333333333 0 0 0 4 99999999999999999999999999999999999999999999999 0 55 8 555555 5555 000 000000 0 6 3 3 5 6 5 00 8 0 5 00 00 5 0000 0 7 888 33 8888 2 333 5 3 2 33 77 4 4 000 66666666666 8 6 88 4 1111 4 9999999 0 3333 0 99 999999999 99 33 777 7 3 33 0 3 33 3 3
consensus : CCTGCCAAA-TATTAACATGG-GCCTTTTTGTG-ANTTTTAATTTTCTAATAAAGCAAA-----TTTCCCCATTGTTGTAACACATATCTTGTCATGGGT-TGACTG-TA-CTTTAT-GATT-ATCA-AGAGTT-CTTTGTAC-ATAAATG-CAAA--A--TATAG-CTTTGAATTAC-AGTACACAGCA----------ATATCCTATCACAATGTTTCTG-TATCTTTTCAGTTACAGTTGTAGTTGCACTAGAATCCAGTAGAAAATTT-AGA--AAACGCCA----CAGAGTAGAAATAAATTGATTAAAGAGTGTTCAAAGATGGAAAC-AAAGCAAGATA-GACATGATTTAACTT--CAG-TAAGA-GACAGTAGAAATA---GTAA--TGGTG-GTGGTAG-TGGTGAT-GGTAAAAACAGTAGTG-ATAGTGGGAAA-CAG-----TGA-C-GGTG---GGG----------AC-TGCA-TCCAAAAGAGTGTG-AAGGTT-CC-----------A-AA-------TNCA------------CTG------CACTAAAGATGAT-CCAAGT--GCAGGGAACCT------G----ATAT---CA------CCAAAAG-ACTTTGCA-TCCTG-GAATACACTATT-ACAAGCTGC-AAAAATAAGAAAA--CATACT-GCAGTCCTACATA-TTGCAGATA-ACACCTCCAGA--AGGATGAAG-TGCCATGCTATCTCT--TACTACCACAGGACAATGCAGAAAAGCATATATTTTCCTTGAAATAAAAC---ACT-G-ACTG----CAATATTGAGCCAAGA-GCAG----ACGCA---A---GAGGAAAATG-T--AGTGGAAGAAAGTAGAAGGCCTGC-------CAGACCCC--CCTCGGTATCCCCAGGGCATATTCT-ATGA-TATCAAGTGCAT-TTTTGTGACNAAACAATCCAAATATATCAAAAGGAA-AATACACGAGTGTCCCTTATAA--TGCTCAGTTTTTTGCGGTCAAGGATGCTAA
Reference ( family-443 ) : CCTGCCAAA-TATTAACATGG-GCCTTTTTGTN-AGTTTTAATTTTCTAATAAAGCAAA-----TTTCCCCATTGTTGTAACACATATCTTGTCATGGGT-TGACTG-TA-CTTTAT-GATT-ATNA-AGAGTT-CTTTGTAC-ATAGATG-CAAA--A--TATAG-CTTTGAATTAC-AGTACACAGCA----------ATATCCTATCACAATGTTTCTG-TATCTTTTCAGTTACAGTTGTAGTTGCACTAGAATCCAGTAGAAAATTT-AGA--AAACGCCA----CAGAGTAGAAATAAATTGATTAAAGAGTGTTCAAAGATGGAAAC-AAAGCAAGATA-GACATGGTTTAACTT--CAG-TAAGA-GACAGTAGAAATA---GTAA--TGGTG-GTGGTAG-TGGTGAT-GGTAAAAACAGTAGTG-ATAGTGGGAA--CAG-----TGG-C-GGCG---GGG----------AC-TGCA-TCCAAAAGAGTGTG-AAGGTT-CC-----------A----------TNCA------------CTG------CACTAAAGATGAT-CCAAGT--GCAGGGAACCT------G----ATAT---CA------CCAAAAG-ACTTTGCA-TCCTG-GAATACACTATT-ACAAGCTGC-AAAAATAAGAAAA--CATACT-GCAGTCCTACATA-NTGCAGATA-ACACCTCCAGA--AGGATGAAG-TGCCATGCTATCTCT--TACTACCACAGGACAATGCAGAAAAGCATATATTTTCCNNGAAATAAAAC---ACT-G-ACTG----CAATATTGAGCNAAGA-GCAG----ACGCA---A---GAGGAAAATG-T--AGTGGAAGAAAGTAGAAGGCCT---------CAGACCCC--CCTCGGTATNCCCAGGGCATATTCTAATGATTATCAAGTGCAT-TTTTGTGACNAAACAATCCAAATATATCAAAAGGAA-AATACACGAGTGTCCCTTATAA--TGCTCAGTTTTTTGCGGTCAAGGATGCTAA
gi|1 : CCTGCCAAA-TATTAACATGG-GCCTTTTTATG-ATTTTTAATTTTCTAATAATACAAA-----TTTTCCCATTGTTGTAACACATATCTTGTCTTGGTT-TGACTG-TA-CTTTAT-GATT-ATCA-AGAGTT-CTTTGTAC-TTAAATG-CAAA--A--TATAG-CTTTAAATCACAAGTACACAGCA----------ACACCCTATCACAGTGTTTATG-TAT--------------TTGTAGTTGTACTAGAATCCAGTAGAAAATTT-TGA--AAACGCCA----CCGAGTAGAAATAAATTGATTAAAGAGTGTTAAAAGATGGAAAC-AAAGCAAGATA-GACATGATTTAACTT--CAG-TAAGA-GACAGTAGAAATA---ATAA--TGGTG-GTGGTAC-TGTTGAT-GGTAAAACCAGTAGTG-ATAGTGGGAA--CAG-----TTG-T-GAT----GGG----------AC-TGCA-TCCAAAACATTGCG-AAGGTT--------------A----------TCCT------------TTG------TACTAAAGATGAT-CCAAGT--GCAGGAAACCT------G----ATTT---CA------CCTAAAG-ACTTTTCA-TCCAG-GAATAAATTGTT-ACAAGCTAC-AAATATAAGAAAA--TATGCT-GCAGTCCTGCATA-TTGCAGAC--ACAACTCC--A--AAGATGAAG-TGCCGTG-TATCTCTTATATTACCGCA-GACAATACAG--AAGC--ATATTTACCTTG-AATAAAAC---ACTGG-ACT-----CAATAGTGAGCCAAGA-GCAG----ATGCA---A---GAGG-AAATGCC--AGTGTAAGAGAGTAGAAGGCCTTTAGCTATACAGATCCT--TTCCGGTATCCTCAGGGCCTA-TCT-ATGA-TATCAAGTGCATATTTTGTGACCAAACAATCAAAATATTTTAAAAGGAAGAATACACGAGTGTCCCTAACAAAGTCCTCAG--TACTGCAATCA--GATGATAA
gi|10 : CAAA-TATTCACATGG-AC--TTTTATCTAGTTTTAATCTTCTAATAAGCCAAA-----ATTCCTCATTGTTGTAACACAT-TCTTGTCATGTGCGTGA-TGTTATTTTTAT-GATTAATGATAGAGGT-CTTTTTAT-ATAGATGCCAAACTA--TATAG-CTTTAAATTAC-AG-ACACAGCT----------AAAT-CTATCACAATG-TTCTGCTGTCTTTGCAGTTACA--------------AAAGTCC-GTAGAAAATTT-AGAACAAATGCCAAT--AAGAGTAGAAATGAATTGATTAAAGAGcct
gi|11 : AAAGATGTAAAC-AAAGCA-------ATATGAT-----------G-TAACA-GACA--AGAAATA---ATAA-----CG-GTGGCAG-AGGTGAT-GGTAAAAACAATAGTG-ATGGTGGGAA--CAG-----TGA-C-GGTGCTAAGT----------AC-TGCA-TCC-AGAGAGTGTG-AAGGTT-TCCACAATACATTA----------TCTA------------CTG------CACTAATGATGAT-CTATGT--GGAGGGAACCC------G----ATAT---CA------CCAAAAG-ACTTTGCA-TCCTG-GAATACACTATT-ACAAGGTGC-AAAAATAAGAAAA--CATACT-GCAGTCTTACATA-at
gi|12 : atTTAC-AGTACACAACA----------ATATCCTATC-CA-TGTTTCTT-TATCTTTTCAGTCACAGTTTTAGTTGCATTAGAATCCAGTAGAAAATTT-AGA--AAATGCCATGCACAGAGTAGAAGTAAATTGATTAAAGAGTGTTCAAAGATGGAAAC-AAAGCAAGACATGAT-TGGTTTAACTT--CAG-TACCA-GACAGTAGAAATA---ATAA--TAGTA-GTGACAG-TGGTAAT-GGTAA
gi|13 : GCCAAA-TATTAACATTG-GACTTTTTGTG-ATTTTTAATTTCCTAATAAAGCAAA-----TTTCCTCATTGTTGTA---CATATCTTGTCATAGGT-TGACTT-TA-CTTTAT-AATT-ATCA-AGAGTT-CTTTGTAC-ATATATG-CAAA--A--TATAG-CTTTGAATTAC-GGTACACAGCAATATATATATATATCCTACCAAAATGTTTCTG-TATCTTATCAGGTACAGTTGTAGTTGCATTAGAACCCAGTtattagatatactagacaccagtt
gi|14 : caTA-CACATG-TCTAACTT--CAGATAATT-TACACTA---------------TGCTGTGTGGTAGATAGTCGT-GG----AACAGT--TG-AC--TTAAAA--CAG-----GGGAT-GACA---CA-----------AC-TGCAATCGAAAAGAGCGTG-AAGGTTGCC-----------ACAAAGA----TGCATGATACGTTTG-CTGGC----CACTAAAGATGAT-CACAGTAGGCAGGGAACCTTGAATGG----AT-C---CA------CC-AAGG-ATCTTGAATTCCTG-GAATAC
gi|15 : ACCATA-ACAAGCTGC-AAAA--AAAAAAC--CATACT-GCAgacat
gi|15 : AAAAAAAACCATACT-GCACTGAAATCAACATTGAGCCAAGA-GCAGTCAGATGTA---A---GAGGAAA-TG-TC-AGTGGAAGAAAGTAGAAGGCCTTC-------CAGATCCT--CCTCGGTATCCCCTGGGCCTATTT--ATGA-TAGCAAGTGCATATTTTATGACAActgaaatcaacattgagccaagagcagtcagatgtaagaggaaatgtcagtggaagaaagtagaaggccttccagatcctcctcggtatcccctgggcctatttatgatagcaagtgcatattttatgacaaca
gi|16 : accataacaagctgcaaAAA-TAGTAACATGGAGC--TTTTGCG-ATTTTAAATTTTCTAATAAAACAAAATTAATTTTCCCATTGTTGTAACACATATCTTGTCATGGTT-TTACTG-TA-CTTTAT-GATT-ATCA-AGAGTT-CTTTGTAC-ATAAATG-CAAA--A--CAGAG-CTTTAA------AGTACACAGGA----------AAATCca
gi|17 : tCCTGTCAAAATAT--ACATGGTGC----TTGTG-TATTTTAATAATCTAATCAAGCAAA-----TT--CCCATT-TTGTAACACATTTGTT-TCATGGAT--GACT--TA-CTTTATTGATT-ATCA-AGAGTTTCTTTGTACCAAAAATG-CAAA--AATTATAGGCTTTGAATTAC-AGTACACAGCA----------gt
gi|18 : catCCTGTCAAAATAT--ACATGGTGC----TTGTG-TATTTTAATAATCTAATCAAGCAAA-----TT--CCCATT-TTGTAACACATTTGTT-TCATGGAT--GACT--TA-CTTTATTGATT-ATCA-AGAGTTTCTTTGTACCAAAAATG-CAAA--AATTATAGGCTTTGAATTAC-AGTACACAGCA----------
gi|19 : catAGA-ATAG----ATGCATTCAT--GAGGAAAATG-T--AGTGGAAG-AAGTAGAAGGCTTG--------CAGACGCC--TCTCGGTATA-CCAGGGCATATT---ATGA-TATCAAGTGCAT-TTT--TGACAAAA
gi|2 : ----CAGAG-AAAACTCTATTGATTAAAGATTGTTCAAAGATGGAAAC-AAAGCAAGATA-GACATGATTTAACTTTTCAA-TAAGAAGGCAGTAGAAATA---GTAAAATGGTG-GTGATAG-TGGTAAT-GGTAAAAACAGTAGTGTATAGTGGGAAACCAAGTTTTTGG-G-GACG---GGGGGGTTTTGCAAC-TACA-TCAAAAAAAGTGTG-AGGTTT-CC-----------AAAATGCATTATTCA------------CTG------CACTAAAGAAGATTCCAAGT--GC--GGAAACT------G----CTAT---CAGAGACTTTAGATG-ACTTTGCG-TCCTTCGAATACACTATT-ACAAGCTGC-AAAA-TAAGAAAA--CA-ACT-GCAGTCCTAC-TA-TAGCAGATA--------CA----------AAG-TGC-ATGCTATCTCT--TACCACCA---GACAATGCAGAAA-GCATAT--TTTCCTTGAA-TACAAC---ACT-G-ACTG----CAATATTGAACGAAGAAGCAG----ACGCA---T---GAGGAAAATT-G--AGTGGAAGAAAG--GAAGGCCTGC-------CAGCTCCT--CCTCGATATCCCCAGGACATATTCTAATGATTATCAAGTGCAT-TTTTGTGACCAAACAATCCAAATATATCAAAAGGAA-AATACACGAGTGTCCCTTATAA--TGCTCAGTTTTTTGCGGTCAAGGATGCTAAaa
gi|20 : AGA-ATAG----ATGCATTCAT--GAGGAAAATG-T--AGTGGAAG-AAGTAGAAGGCTTG--------CAGACGCC--TCTCGGTATA-CCAGGGCATATT---ATGA-TATCAAGTGCAT-TTT--TGACAAAAtttg
gi|21 : ACTAAAGATGAG-CTATGT--GCAAGGAACCT------G----ATAT---CA------CCAAAAG-ACTAAACA-TCCTG-GAATACACTATT-ATAAGGTGC-AAaa
gi|22 : TTGTA-TCCTT-GAATACACTATT-ACAAGCCGCAAAAAATAAATAAT--CATACT-GTAGTCCAACATA-TTTCAGAT
gi|23 : TTGTTGTAACACATATCTTGTCATGGGT-TGACTG-TA-CTTTGC-GATT-AT
gi|3 : ----CAGAG-AAAACTCTATTGATTAAAGATTGTTCAAAGATGGAAAC-AAAGCAAGATA-GACATGATTTAACTTTTCAA-TAAGAAGGCAGTAGAAATA---GTAAAATGGTG-GTGATAG-TGGTAAT-GGTAAAAACAGTAGTGTATAGTGGGAAACCAAGTTTTTGG-G-GACG---GGGGGGTTTTGCAAC-TACA-TCAAAAAAAGTGTG-AGGTTT-CC-----------AAAATGCATTATTCA------------CTG------CACTAAAGAAGATTCCAAGT--GC--GGAAACT------G----CTAT---CAGAGACTTTAGATG-ACTTTGCG-TCCTTCGAATACACTATT-ACAAGCTGC-AAAA-TAAGAAAA--CA-ACT-GCAGTCCTAC-TA-TAGCAGATA--------CA----------AAG-TGC-ATGCTATCTCT--TACCACCA---GACAATGCAGAAA-GCATAT--TTTCCTTGAA-TACAAC---ACT-G-ACTG----CAATATTGAACGAAGAAGCAG----ACGCA---T---GAGGAAAATT-G--AGTGGAAGAAAG--GAAGGCCTGC-------CAGCTCCT--CCTCGATATCCCCAGGACATATTCTAATGATTATCAAGTGCAT-TTTTGTGACCAAACAATCCAAATATATCAAAAGGAA-AATACACGAGTGTCCCTTATAA--TGCTCAGTTTTTTGCGGTCAAGGATGCTAA
gi|4 : -----TTTTCCTATTCTTGCAACACATATCTTGTCATGGTT-TGACTG-TA-CTTTAT-GATG-AAAA-AGAGAT-ATTTGCAC-ATAAATG-CGAA--A--TATAG-CTTTAAATCAC-AGTACACAGCG----------ATATCCTATCACAATGTTTCTG-TATATTTTCAGGTACAGTTATAATTGCACTTGAATCAAGTAGAACATTT-AGA--AAACGCTA----CAGAGTAGAAATAGATTGATTAAAGAGTGTTCAGATATGGAAAC-AAATCAAGATA-TACATGG-TTAACTT--CAG-TAAAA-GACAGGTGAAATAATGGTAG--TGGTG-GTGGTAG-TGGTGAT-GGTAAAAGCAGTAGTG-ATAAAGGAAA--CAG-----TGA-C-GGT----GCA----------AC-TGCA-TCAAAAAGAGTGTG-ATGGTT-TCCACAATGCATTA----------CCCA------------CTG------CAC-AAAGACGAT-CCAAGT--GCAGGGAACCT------G----ATAT---CA------TCAAAAG-ACTTTGCA-TCCTG-GAATACACCATA-ACAAGCTGC-AAAA--AAAAAAC--CATACT-GCAtttg
gi|5 : TTGTAGTTGCACTAGAATCCAGTAGAAAATTTTAGG--AAACGCCA----CAGAGTAGAAATAAAATGATGAAAG-GTGTTCAAAGATGGAAAC-AAAACAAAATA-ACCATGATTTAACTT--CC--TAAGA-GACAGAAGAAATA---GTAA--TGGTG-GTGGTAG-TGGTGATTGATAAAAACAATAGTT-ATAGTGGGAAA-CAG-----TGA-C-GGTG---AAA----------CT-TACA-TCCAAAAGAGTGTG-AAGGCT-CC-----------ACAA-------TGCA------------TTATCTACTCACTAAAGATGAT-CCAAGT--GCAGGGAACCT------G----ATAT---CA------CCAAAAACACTTTGCA-TCCCG-GAATACACTTTTTACAG--TGC-AAAAATAAGAAAAACCACACT-GCAGTCCTAC-TAGGTGCAGATA-ACACCTCCAGA--AGGATGAAG-TGCCA-GC-ATCT------CTACCACAGGACAATGCAG-AAAGCATATATTTTCCGGGAAATAAAAC---
gi|6 : tcTTGTAGTTGCACTAGAATCCAGTAGAAAATTTTAGG--AAACGCCA----CAGAGTAGAAATAAAATGATGAAAG-GTGTTCAAAGATGGAAAC-AAAACAAAATA-ACCATGATTTAACTT--CC--TAAGA-GACAGAAGAAATA---GTAA--TGGTG-GTGGTAG-TGGTGATTGATAAAAACAATAGTT-ATAGTGGGAAA-CAG-----TGA-C-GGTG---AAA----------CT-TACA-TCCAAAAGAGTGTG-AAGGCT-CC-----------ACAA-------TGCA------------TTATCTACTCACTAAAGATGAT-CCAAGT--GCAGGGAACCT------G----ATAT---CA------CCAAAAACACTTTGCA-TCCCG-GAATACACTTTTTACAG--TGC-AAAAATAAGAAAAACCACACT-GCAGTCCTAC-TAGGTGCAGATA-ACACCTCCAGA--AGGATGAAG-TGCCA-GC-ATCT------CTACCACAGGACAATGCAG-AAAGCATATATTTTCCGGGAAATAAAAC---
gi|7 : tcTGCCAAA-TATTAACACGG-GGCTTTTTGCA-AGTTTTAATTTTCTAATAAAGCAAA-----ATTCCTCATTGCTGTAGCACATATATTGTCATGGGT-TGACTG-TA-CTTTAT-GATT-ATGA-AAAGTT-CTTTGTAC-TT-GATG-CTAA--C--TATAG-CTTTAAATTAC-AGTACAAAGCA----------ATATCCTATCACAATGTTTCTG-TGTCTTTTCAGTTACAGTTGTAGTTGCTCTAGAATCTAGTGGAAAATTT-AGA--AAATACCA----CAGAGTAGAAATGAATTGATTGAAGAGTGTTCAAAGATGGAAAC-AAAGCAAGATA-GGAATGGTTTAACTT--CAG-TAACA-GACAGTAGAAATA---ATAA--CGGTG-GTGGCAG-TGGAGAT-GGTAAAACCAGTAGTG-ATAGTGGGAA--CAG-----TGA-C-GGT----GCA----------AT-TGCA-TCCAAAAGAGTGCG-
gi|8 : G-ATGGTGGAAA--C-------TGA-CAGGTT---GCT----------ACATGCA-TCCAAATGAGGGTGTAAGGTT-CC-----------A----------CTCAATGCATATCCCACTG------CACTAAA-ATGA--CCAAGT--GCAGGGAAACC------GGTGGATATTTTCA------TCAAAAG-ACCT-GCA-TCCTG-CA-TACATTATT-ACAAACAGC-AAAA-TAAGAAAA---ATACTTGCAGCCTTACATA-GTGCAGGGATACACCTCCAGATTAGGATGAAGATGC--TGTTGTCTCT--TAC---CACAGGACAATGCAGAAAA-CA-----------------AAAAC---ACC-----------CAA----GAGCC-AGA-GCAG----ATGAA---AAATGAGG-AAATG-TCAATTGGAAGAAA-T--GATGCC----------CAGACCCCTTCCTCGGTATACCCAGGgt
gi|9 : AATATGG-GGCTTTTTGTT-CGTTTTAATTTTCTAATAAAGCAAA-----ATTCCTCATTGTTGTAACACATATCTTGTCATGGGT-TGACTG-TA-TTTTAT-AATT-ATGA-AGAGTT-CTTTGTAC--TAGATG-CCAA--A--TATAG-CTCTGAATTAC-AGTACACAGCA----------ATATCCTATC-C-ACGTTTCTG-TATCTTTTCAGTTACAGTTGTAGTTGCACT--------------AATT------------CC--------AGTAGAAATAAATTGATTAAAGAGTGTCCATTGATGGAAACAAAAGTAAGATG-GACATGGTCTAACTT--CAG-cc
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 1 1111 11111 11 11 1111111111 1 1111 11 11 11 2222222 44444444444444 000000000000000000000000000000000000000000000 111111 222222 1 11 1 11 11 1111 111 1111 111 1 11 111 22222222222 1 1111 3333333 1111 1111 111 11111 1111 1 1 1 11
lowQualScore : 1 5 7777 222 11111 22 2 1 0 44 66 4 8 4 1 4 8 11 4 66 22 8 4 7777777777 5 0 5 0 1 0 0 66 4444 0 0 4 3 0 00 555 1 8 1 777 11 4 4 8 8 55 0 11 6666666 4 88888888888888 4 4 4 4 8 555555555555555555555555555555555555555555555 8 55 0 111111 8888 777 333333 8 3 7 7 0 3 5 11 3 4 5 11 44 2 9999 1 6 999 88 4444 4 222 5 7 3 44 66 1 8 000 44444444444 3 0 0 1 2222 1 9999999 5 9999 2222 000 5 66666 77 0 4 8888 3 3 88 1 3 88 7 7
lowQualScore : . . .... ... ..... .. . . . .. .. . . . . . . .. . .. .. . . .......... . . . . . . . .. .... . . . . . .. ... . . . ... .. . . . . .. . .. ....... . .............. . . . . . ............................................. . .. . ...... .... ... ...... . . . . . . . .. . . . .. .. . .... . . ... .. .... . ... . . . .. .. . . ... ........... . . . . .... . ....... . .... .... ... . ..... .. . . .... . . .. . . .. . .
lowQualScore : 4 0 1111 999 11111 88 5 1 7 88 55 0 0 0 1 4 9 11 4 11 22 9 0 5555555555 0 1 7 7 3 7 0 99 0000 8 8 0 6 9 00 555 6 0 0 000 00 0 0 0 0 55 8 00 0000000 0 66666666666666 0 0 0 4 9 444444444444444444444444444444444444444444444 0 55 8 555555 5555 000 000000 0 6 3 3 5 6 5 00 8 0 5 33 00 5 0000 0 7 888 33 8888 2 333 5 3 2 33 00 4 4 000 66666666666 8 6 8 4 1111 4 9999999 0 3333 0000 000 7 44444 99 7 3 3333 3 3 33 0 3 33 3 3
consensus : CCTGCCAAA-TATTAACATGG-GCCTTTTTGTGANTTTTAATTTTCTAATAAAGCAAA-----TTTCCCCATTGTTGTAACACATATCTTGTCATGGGT-TGACTG-TA-CTTTAT-GATT-ATCA-AGAGTT-CTTTGTAC-ATAAATG-CAAA--A--TATAG-CTTTGAATTAC-AGTACACAGCA----------ATATCCTATCACAATGTTTCTG-TATCTTTTCAGTTACAGTTGTAGTTGCACTAGAATCCAGTAGAAAA-TTTAGA--AAACGCCA----CAGAGTAGAAATAAATTGATTAAAGAGTGTTCAAAGATGGAAAC-AAAGCAAGATA-GACATGATTTAACTT--CAG-TAAGA-GACAGTAGAAATA---GTAA--TGGTG-GTGGTAG-TGGTGA-TGGTAAAAACAGTAGTG-A--TAGTGGGAAAC--AGT-------GAC-GGTG---GNA-------AC-TGCA-TCCAAAAGAGTGTG-AAGG-TT-CCAC---AA--------T-------NCA-----------CTG------CACTAAAGATGAT-CCAAGT--GCAGGGAACCT------G----ATAT---CA------CCAAAAG-ACTTTGCA-TCCTG-GAATACAC-TATTACAAGCTGC-AAAAATAAGAAAA--CATACT-GCAGTCCTACATA-TTGCAGATA-ACACCTCCAGA--AGGATGAAG-TGCCATGCTATCTCT--TACTACCACAGGACAATGCAGAAAAGCATATATTTTCCTTGAAATAAAAC---ACT-G-ACTG----CAATATTGAGCCAAGA-GCAG----ACGCA---A---GAGGAAAATG-T--AGTGGAAGAAAGTAGAAGGCCT---G-C----CAGACCCC--CCTCGGTATCCCCAGGGCATATTCTA-TGAT-ATCAAGTGCAT-TTTTGTGACNAAACAATCCAAATATATCAAAAGGAA-AATACACGAGTGTCCCTTATAA--TGCTCAGTTTTTTGCGGTCAAGGATGCTAA
Reference ( family-443 ) : CCTGCCAAA-TATTAACATGG-GCCTTTTTGTGANTTTTAATTTTCTAATAAAGCAAA-----TTTCCCCATTGTTGTAACACATATCTTGTCATGGGT-TGACTG-TA-CTTTAT-GATT-ATCA-AGAGTT-CTTTGTAC-ATAAATG-CAAA--A--TATAG-CTTTGAATTAC-AGTACACAGCA----------ATATCCTATCACAATGTTTCTG-TATCTTTTCAGTTACAGTTGTAGTTGCACTAGAATCCAGTAGAAAA-TTTAGA--AAACGCCA----CAGAGTAGAAATAAATTGATTAAAGAGTGTTCAAAGATGGAAAC-AAAGCAAGATA-GACATGATTTAACTT--CAG-TAAGA-GACAGTAGAAATA---GTAA--TGGTG-GTGGTAG-TGGTGA-TGGTAAAAACAGTAGTG-A--TAGTGGGAAAC--AGT-------GAC-GGTG---GGG-------AC-TGCA-TCCAAAAGAGTGTG-AAGG-TT-CCA----AA--------T-------NCA-----------CTG------CACTAAAGATGAT-CCAAGT--GCAGGGAACCT------G----ATAT---CA------CCAAAAG-ACTTTGCA-TCCTG-GAATACAC-TATTACAAGCTGC-AAAAATAAGAAAA--CATACT-GCAGTCCTACATA-TTGCAGATA-ACACCTCCAGA--AGGATGAAG-TGCCATGCTATCTCT--TACTACCACAGGACAATGCAGAAAAGCATATATTTTCCTTGAAATAAAAC---ACT-G-ACTG----CAATATTGAGCCAAGA-GCAG----ACGCA---A---GAGGAAAATG-T--AGTGGAAGAAAGTAGAAGGCCT---G-C----CAGACCCC--CCTCGGTATCCCCAGGGCATATTCTA-TGAT-ATCAAGTGCAT-TTTTGTGACNAAACAATCCAAATATATCAAAAGGAA-AATACACGAGTGTCCCTTATAA--TGCTCAGTTTTTTGCGGTCAAGGATGCTAA
gi|1 : CCTGCCAAA-TATTAACATGG-GCCTTTTTATGATTTTTAATTTTCTAATAATACAAA-----TTTTCCCATTGTTGTAACACATATCTTGTCTTGGTT-TGACTG-TA-CTTTAT-GATT-ATCA-AGAGTT-CTTTGTAC-TTAAATG-CAAA--A--TATAG-CTTTAAATCACAAGTACACAGCA----------ACACCCTATCACAGTGTTTATG-TAT--------------TTGTAGTTGTACTAGAATCCAGTAGAAAA-TTTTGA--AAACGCCA----CCGAGTAGAAATAAATTGATTAAAGAGTGTTAAAAGATGGAAAC-AAAGCAAGATA-GACATGATTTAACTT--CAG-TAAGA-GACAGTAGAAATA---ATAA--TGGTG-GTGGTAC-TGTTGA-TGGTAAAACCAGTAGTG-A--TAGTGGG-AAC--AGT-------TGT-GAT----GGG-------AC-TGCA-TCCAAAACATTGCG-AAGG-TT---------A--------T-------CCT-----------TTG------TACTAAAGATGAT-CCAAGT--GCAGGAAACCT------G----ATTT---CA------CCTAAAG-ACTTTTCA-TCCAG-GAATAAAT-TGTTACAAGCTAC-AAATATAAGAAAA--TATGCT-GCAGTCCTGCATA-TTGCAGAC--ACAACTCC--A--AAGATGAAG-TGCCGTG-TATCTCTTATATTACCGCA-GACAATACAG--AAGC--ATATTTACCTTG-AATAAAAC---ACTGG-ACT-----CAATAGTGAGCCAAGA-GCAG----ATGCA---A---GAGG-AAATGCC--AGTGTAAGAGAGTAGAAGGCCTTTAG-CTATACAGATCCT--TTCCGGTATCCTCAGGGCCTA-TCTA-TGAT-ATCAAGTGCATATTTTGTGACCAAACAATCAAAATATTTTAAAAGGAAGAATACACGAGTGTCCCTAACAAAGTCCTCAG--TACTGCAATCA--GATGATAA
gi|10 : CAAA-TATTCACATGG-ACTTTTATCT-AGTTTTAATCTTCTAATAAGCCAAA-----ATTCCTCATTGTTGTAACACAT-TCTTGTCATGTGCGTGA-TGTTATTTTTAT-GATTAATGATAGAGGT-CTTTTTAT-ATAGATGCCAAACTA--TATAG-CTTTAAATTAC-AG-ACACAGCT----------AAAT-CTATCACAATG-TTCTGCTGTCTTTGCAGTTACA--------------AAAGTCC-GTAGAAAA-TTTAGAACAAATGCCAAT--AAGAGTAGAAATGAATTGATTAAAGAGcct
gi|11 : AAAGATGTAAAC-AAAGCAA-------TATGATGTAAC------------A-GACA--AGAAATA---ATAA--CGGTG-GC---AG-AGGTGA-TGGTAAAAACAATAGTG-A--TGGTGGGAA-C--AGT-------GAC-GGTGCTAAGT-------AC-TGCA-TCCAGA-GAGTGTG-AAGG-TTTCCAC---AA--------T-------ACATTATCTA----CTG------CACTAATGATGAT-CTATGT--GGAGGGAACCC------G----ATAT---CA------CCAAAAG-ACTTTGCA-TCCTG-GAATACAC-TATTACAAGGTGC-AAAAATAAGAAAA--CATACT-GCAGTCTTACATA-at
gi|12 : atTTAC-AGTACACAACA----------ATATCCTATC-CA-TGTTTCTT-TATCTTTTCAGTCACAGTTTTAGTTGCATTAGAATCCAGTAGAAAA-TTTAGA--AAATGCCATGCACAGAGTAGAAGTAAATTGATTAAAGAGTGTTCAAAGATGGAAAC-AAAGCAAGACATGAT-TGGTTTAACTT--CAG-TACCA-GACAGTAGAAATA---ATAA--TAGTA-GTGACAG-TGGTAA-TGGTAA
gi|13 : GCCAAA-TATTAACATTG-GACTTTTTGTGATTTTTAATTTCCTAATAAAGCAAA-----TTTCCTCATTGTTGTA---CATATCTTGTCATAGGT-TGACTT-TA-CTTTAT-AATT-ATCA-AGAGTT-CTTTGTAC-ATATATG-CAAA--A--TATAG-CTTTGAATTAC-GGTACACAGCAATATATATATATATCCTACCAAAATGTTTCTG-TATCTTATCAGGTACAGTTGTAGTTGCATTAGAACCCAGTtattagatatactagacaccagtt
gi|14 : caTA-CACATG-TCTAACTT--CAGATAATT-TACACTA---------------TGCTGTGTGGTAGATAGTCG-TGG----AACAGT--TG-ACTTA-----AAAC--AGG-------G---GATG---ACACA-----AC-TGCAATCGAAAAGAGCGTG-AAGG-TTGCCACAAAGA--------T-------GCATGATACGTTTGCTGGC----CACTAAAGATGAT-CACAGTAGGCAGGGAACCTTGAATGG----AT-C---CA------CC-AAGG-ATCTTGAATTCCTG-GAATAC
gi|15 : AC-CATAACAAGCTGC-AAAA--AAAAAAC--CATACT-GCAgacat
gi|15 : AAAAAAAACCATACT-GCACTGAAATCAACATTGAGCCAAGA-GCAGTCAGATGTA---A---GAGGAAA-TG-TC-AGTGGAAGAAAGTAGAAGGCCT---T-C----CAGATCCT--CCTCGGTATCCCCTGGGCCTATT-TA-TGAT-AGCAAGTGCATATTTTATGACAActgaaatcaacattgagccaagagcagtcagatgtaagaggaaatgtcagtggaagaaagtagaaggccttccagatcctcctcggtatcccctgggcctatttatgatagcaagtgcatattttatgacaaca
gi|16 : accataacaagctgcaaAAA-TAGTAACATGGAGC--TTTTGCGATTTTAAATTTTCTAATAAAACAAAATTAATTTTCCCATTGTTGTAACACATATCTTGTCATGGTT-TTACTG-TA-CTTTAT-GATT-ATCA-AGAGTT-CTTTGTAC-ATAAATG-CAAA--A--CAGAG-CTTTAA------AGTACACAGGA----------AAATCca
gi|17 : tCCTGTCAAAATAT--ACATGGTGC----TTGTGTATTTTAATAATCTAATCAAGCAAA-----TT--CCCATT-TTGTAACACATTTGTT-TCATGGAT--GACT--TA-CTTTATTGATT-ATCA-AGAGTTTCTTTGTACCAAAAATG-CAAA--AATTATAGGCTTTGAATTAC-AGTACACAGCA----------gt
gi|18 : catCCTGTCAAAATAT--ACATGGTGC----TTGTGTATTTTAATAATCTAATCAAGCAAA-----TT--CCCATT-TTGTAACACATTTGTT-TCATGGAT--GACT--TA-CTTTATTGATT-ATCA-AGAGTTTCTTTGTACCAAAAATG-CAAA--AATTATAGGCTTTGAATTAC-AGTACACAGCA----------
gi|19 : catAGA-ATAG----ATGCATTCAT--GAGGAAAATG-T--AGTGGAAGAA-GTAGAAGGCTT---G-C-----AGACGCC--TCTCGGTATACC-AGGGCATATT--A-TGAT-ATCAAGTGCAT-TTT--TGACAAAA
gi|2 : ----CAGAG-AAAACTCTATTGATTAAAGATTGTTCAAAGATGGAAAC-AAAGCAAGATA-GACATGATTTAACTTTTCAA-TAAGAAGGCAGTAGAAATA---GTAAAATGGTG-GTGATAG-TGGTAA-TGGTAAAAACAGTAGTGTA--TAGTGGGAAACCAAGTTTTTGGGGAC-GGGG---GGGTTTTGCAAC-TACA-TCAAAAAAAGTGTG-AGGT-TT-CCA----AAATGCATTAT-------TCA-----------CTG------CACTAAAGAAGATTCCAAGT--GC--GGAAACT------G----CTAT---CAGAGACTTTAGATG-ACTTTGCG-TCCTTCGAATACAC-TATTACAAGCTGC-AAAA-TAAGAAAA--CA-ACT-GCAGTCCTAC-TA-TAGCAGATA--------CA----------AAG-TGC-ATGCTATCTCT--TACCACCA---GACAATGCAGAAA-GCATAT--TTTCCTTGAA-TACAAC---ACT-G-ACTG----CAATATTGAACGAAGAAGCAG----ACGCA---T---GAGGAAAATT-G--AGTGGAAGAAAG--GAAGGCCT---G-C----CAGCTCCT--CCTCGATATCCCCAGGACATATTCTAATGATTATCAAGTGCAT-TTTTGTGACCAAACAATCCAAATATATCAAAAGGAA-AATACACGAGTGTCCCTTATAA--TGCTCAGTTTTTTGCGGTCAAGGATGCTAAaa
gi|20 : AGA-ATAG----ATGCATTCAT--GAGGAAAATG-T--AGTGGAAGAA-GTAGAAGGCTT---G-C-----AGACGCC--TCTCGGTATACC-AGGGCATATT--A-TGAT-ATCAAGTGCAT-TTT--TGACAAAAtttg
gi|21 : ACTAAAGATGAG-CTATGT--GCAAGGAACCT------G----ATAT---CA------CCAAAAG-ACTAAACA-TCCTG-GAATACAC-TATTATAAGGTGC-AAaa
gi|22 : TTGTA-TCCTT-GAATACAC-TATTACAAGCCGCAAAAAATAAATAAT--CATACT-GTAGTCCAACATA-TTTCAGAT
gi|23 : TTGTTGTAACACATATCTTGTCATGGGT-TGACTG-TA-CTTTGC-GATT-AT
gi|3 : ----CAGAG-AAAACTCTATTGATTAAAGATTGTTCAAAGATGGAAAC-AAAGCAAGATA-GACATGATTTAACTTTTCAA-TAAGAAGGCAGTAGAAATA---GTAAAATGGTG-GTGATAG-TGGTAA-TGGTAAAAACAGTAGTGTA--TAGTGGGAAACCAAGTTTTTGGGGAC-GGGG---GGGTTTTGCAAC-TACA-TCAAAAAAAGTGTG-AGGT-TT-CCA----AAATGCATTAT-------TCA-----------CTG------CACTAAAGAAGATTCCAAGT--GC--GGAAACT------G----CTAT---CAGAGACTTTAGATG-ACTTTGCG-TCCTTCGAATACAC-TATTACAAGCTGC-AAAA-TAAGAAAA--CA-ACT-GCAGTCCTAC-TA-TAGCAGATA--------CA----------AAG-TGC-ATGCTATCTCT--TACCACCA---GACAATGCAGAAA-GCATAT--TTTCCTTGAA-TACAAC---ACT-G-ACTG----CAATATTGAACGAAGAAGCAG----ACGCA---T---GAGGAAAATT-G--AGTGGAAGAAAG--GAAGGCCT---G-C----CAGCTCCT--CCTCGATATCCCCAGGACATATTCTAATGATTATCAAGTGCAT-TTTTGTGACCAAACAATCCAAATATATCAAAAGGAA-AATACACGAGTGTCCCTTATAA--TGCTCAGTTTTTTGCGGTCAAGGATGCTAA
gi|4 : -----TTTTCCTATTCTTGCAACACATATCTTGTCATGGTT-TGACTG-TA-CTTTAT-GATG-AAAA-AGAGAT-ATTTGCAC-ATAAATG-CGAA--A--TATAG-CTTTAAATCAC-AGTACACAGCG----------ATATCCTATCACAATGTTTCTG-TATATTTTCAGGTACAGTTATAATTGCACTTGAATCAAGTAGAACA-TTTAGA--AAACGCTA----CAGAGTAGAAATAGATTGATTAAAGAGTGTTCAGATATGGAAAC-AAATCAAGATA-TACATGG-TTAACTT--CAG-TAAAA-GACAGGTGAAATAATGGTAG--TGGTG-GTGGTAG-TGGTGA-TGGTAAAAGCAGTAGTG-A--TAA-AGGAAAC--AGT-------GAC-GGT----GCA-------AC-TGCA-TCAAAAAGAGTGTG-ATGGTTT-CCAC---AA--------TGCATTACCCA-----------CTG------CAC-AAAGACGAT-CCAAGT--GCAGGGAACCT------G----ATAT---CA------TCAAAAG-ACTTTGCA-TCCTG-GAATACAC-CATAACAAGCTGC-AAAA--AAAAAAC--CATACT-GCAtttg
gi|5 : TTGTAGTTGCACTAGAATCCAGTAGAAAATTTTAGG--AAACGCCA----CAGAGTAGAAATAAAATGATGAAAG-GTGTTCAAAGATGGAAAC-AAAACAAAATA-ACCATGATTTAACTT--C-C-TAAGA-GACAGAAGAAATA---GTAA--TGGTG-GTGGTAG-TGGTGATTGATAAAAACAATAGTT-A--TAGTGGGAAAC--AGT-------GAC-GGTG---AAA-------CT-TACA-TCCAAAAGAGTGTG-AAGG-CT-CCAC---AA--------T-------GCA-----------TTATCTACTCACTAAAGATGAT-CCAAGT--GCAGGGAACCT------G----ATAT---CA------CCAAAAACACTTTGCA-TCCCG-GAATACACTTTTTACAG--TGC-AAAAATAAGAAAAACCACACT-GCAGTCCTAC-TAGGTGCAGATA-ACACCTCCAGA--AGGATGAAG-TGCCA-GC-ATCT------CTACCACAGGACAATGCAG-AAAGCATATATTTTCCGGGAAATAAAAC---
gi|6 : tcTTGTAGTTGCACTAGAATCCAGTAGAAAATTTTAGG--AAACGCCA----CAGAGTAGAAATAAAATGATGAAAG-GTGTTCAAAGATGGAAAC-AAAACAAAATA-ACCATGATTTAACTT--C-C-TAAGA-GACAGAAGAAATA---GTAA--TGGTG-GTGGTAG-TGGTGATTGATAAAAACAATAGTT-A--TAGTGGGAAAC--AGT-------GAC-GGTG---AAA-------CT-TACA-TCCAAAAGAGTGTG-AAGG-CT-CCAC---AA--------T-------GCA-----------TTATCTACTCACTAAAGATGAT-CCAAGT--GCAGGGAACCT------G----ATAT---CA------CCAAAAACACTTTGCA-TCCCG-GAATACACTTTTTACAG--TGC-AAAAATAAGAAAAACCACACT-GCAGTCCTAC-TAGGTGCAGATA-ACACCTCCAGA--AGGATGAAG-TGCCA-GC-ATCT------CTACCACAGGACAATGCAG-AAAGCATATATTTTCCGGGAAATAAAAC---
gi|7 : tcTGCCAAA-TATTAACACGG-GGCTTTTTGCAAGTTTTAATTTTCTAATAAAGCAAA-----ATTCCTCATTGCTGTAGCACATATATTGTCATGGGT-TGACTG-TA-CTTTAT-GATT-ATGA-AAAGTT-CTTTGTAC-TTGA-TG-CTAA--C--TATAG-CTTTAAATTAC-AGTACAAAGCA----------ATATCCTATCACAATGTTTCTG-TGTCTTTTCAGTTACAGTTGTAGTTGCTCTAGAATCTAGTGGAAAA-TTTAGA--AAATACCA----CAGAGTAGAAATGAATTGATTGAAGAGTGTTCAAAGATGGAAAC-AAAGCAAGATA-GGAATGGTTTAACTT--CAG-TAACA-GACAGTAGAAATA---ATAA--CGGTG-GTGGCAG-TGGAGA-TGGTAAAACCAGTAGTG-A--TAGTGGG-AAC--AGT-------GAC-GGT----GCA-------AT-TGCA-TCCAAAAGAGTGCG-
gi|8 : G-A--TGGTGG-AAAC----T-------GACAGGTT---GCT-------ACATGCA-TCCAAATGAGGGTGTAAGG-TT-CCACTC-AA--------T-------GCATATCCCA----CTG------CACTAAA-ATGA--CCAAGT--GCAGGGAAACC------GGTGGATATTTTCA------TCAAAAG-ACCT-GCA-TCCTG-CA-TACAT-TATTACAAACAGC-AAAA-TAAGAAAA---ATACTTGCAGCCTTACATA-GTGCAGGGATACACCTCCAGATTAGGATGAAGATGC--TGTTGTCTCT--TAC---CACAGGACAATGCAGAAAA-CA-----------------AAAAC---ACC-----------CAA----GAGCC-AGA-GCAG----ATGAA---AAATGAGG-AAATG-TCAATTGGAAGAAA-T-GA-----T---GCC----CAGACCCCTTCCTCGGTATACCCAGGgt
gi|9 : AATATGG-GGCTTTTTGTTCGTTTTAATTTTCTAATAAAGCAAA-----ATTCCTCATTGTTGTAACACATATCTTGTCATGGGT-TGACTG-TA-TTTTAT-AATT-ATGA-AGAGTT-CTTTGTAC--TAGATG-CCAA--A--TATAG-CTCTGAATTAC-AGTACACAGCA----------ATATCCTATC-C-ACGTTTCTG-TATCTTTTCAGTTACAGTTGTAGTTGCACT--------------AA-TT-----------CC--------AGTAGAAATAAATTGATTAAAGAGTGTCCATTGATGGAAACAAAAGTAAGATG-GACATGGTCTAACTT--CAG-cc
Alignments
lowQualScore : 1 1111 11111 11 11 1111111111 1 1111 11 11 11 2222222 333333333333333 7777777777777777777777777777777777777777777777 111111 222222 1 11 1 11 11 1111 111 1111 111 1 11 111 22222222222 1 1111 3333333 1111 1111 111 11111 1111 1 1 1 11
lowQualScore : 1 5 7777 222 11111 22 2 1 0 44 66 4 8 4 1 4 8 11 4 66 22 8 4 7777777777 5 0 5 0 1 0 0 66 4444 0 0 4 3 0 00 555 1 8 1 777 11 4 4 8 8 55 0 11 6666666 4 2 333333333333333 4 4 4 4 8 7777777777777777777777777777777777777777777777 8 55 0 111111 8888 777 333333 8 3 7 7 0 3 5 11 3 4 5 11 44 2 9999 1 6 999 88 4444 4 222 5 7 3 44 66 1 8 000 44444444444 3 0 0 1 2222 1 9999999 5 9999 2222 000 5 66666 77 0 4 8888 3 3 88 1 3 88 7 7
lowQualScore : . . .... ... ..... .. . . . .. .. . . . . . . .. . .. .. . . .......... . . . . . . . .. .... . . . . . .. ... . . . ... .. . . . . .. . .. ....... . . ............... . . . . . .............................................. . .. . ...... .... ... ...... . . . . . . . .. . . . .. .. . .... . . ... .. .... . ... . . . .. .. . . ... ........... . . . . .... . ....... . .... .... ... . ..... .. . . .... . . .. . . .. . .
lowQualScore : 4 0 1111 999 11111 88 5 1 7 88 55 0 0 0 1 4 9 11 4 11 22 9 0 5555555555 0 1 7 7 3 7 0 99 0000 8 8 0 6 9 00 555 6 0 0 000 00 0 0 0 0 55 8 00 0000000 0 5 888888888888888 0 0 0 4 9 7777777777777777777777777777777777777777777777 0 55 8 555555 5555 000 000000 0 6 3 3 5 6 5 00 8 0 5 33 00 5 0000 0 7 888 33 8888 2 333 5 3 2 33 00 4 4 000 66666666666 8 6 8 4 1111 4 9999999 0 3333 0000 000 7 44444 99 7 3 3333 3 3 33 0 3 33 3 3
consensus : CCTGCCAAA-TATTAACATGG-GCCTTTTTGTGANTTTTAATTTTCTAATAAAGCAAA-----TTTCCCCATTGTTGTAACACATATCTTGTCATGGGT-TGACTG-TA-CTTTAT-GATT-ATCA-AGAGTT-CTTTGTAC-ATAAATG-CAAA--A--TATAG-CTTTGAATTAC-AGTACACAGCA----------ATATCCTATCACAATGTTTCTG-TATCTTTTCAGTTACAGTTGTAGTTGCACTAGAATCCAGTAGAAAA-TTTAGA--AAACGCCA----CAGAGTAGAAATAAATTGATTAAAGAGTGTTCAAAGATGGAAAC-AAAGCAAGATA-GACATGATTTAACTT--CAG-TAAGA-GACAGTAGAAATA---GTAA--TGGTG-GTGGTAG-TGGTGA-TGGTAAAAACAGTAGTG-A--TAGTGGGAAAC--AGT-------GAC-GGTGGN-------A--A---C-TGCA-TCCAAAAGAGTGTG-AAGG-TT-CCA-----C--A--A---T-------NCA-----------CTG------CACTAAAGATGAT-CCAAGT--GCAGGGAACCT------G----ATAT---CA------CCAAAAG-ACTTTGCA-TCCTG-GAATACAC-TATTACAAGCTGC-AAAAATAAGAAAA--CATACT-GCAGTCCTACATA-TTGCAGATA-ACACCTCCAGA--AGGATGAAG-TGCCATGCTATCTCT--TACTACCACAGGACAATGCAGAAAAGCATATATTTTCCTTGAAATAAAAC---ACT-G-ACTG----CAATATTGAGCCAAGA-GCAG----ACGCA---A---GAGGAAAATG-T--AGTGGAAGAAAGTAGAAGGCCT---G-C----CAGACCCC--CCTCGGTATCCCCAGGGCATATTCTA-TGAT-ATCAAGTGCAT-TTTTGTGACNAAACAATCCAAATATATCAAAAGGAA-AATACACGAGTGTCCCTTATAA--TGCTCAGTTTTTTGCGGTCAAGGATGCTAA
Reference ( family-443 ) : CCTGCCAAA-TATTAACATGG-GCCTTTTTGTGANTTTTAATTTTCTAATAAAGCAAA-----TTTCCCCATTGTTGTAACACATATCTTGTCATGGGT-TGACTG-TA-CTTTAT-GATT-ATCA-AGAGTT-CTTTGTAC-ATAAATG-CAAA--A--TATAG-CTTTGAATTAC-AGTACACAGCA----------ATATCCTATCACAATGTTTCTG-TATCTTTTCAGTTACAGTTGTAGTTGCACTAGAATCCAGTAGAAAA-TTTAGA--AAACGCCA----CAGAGTAGAAATAAATTGATTAAAGAGTGTTCAAAGATGGAAAC-AAAGCAAGATA-GACATGATTTAACTT--CAG-TAAGA-GACAGTAGAAATA---GTAA--TGGTG-GTGGTAG-TGGTGA-TGGTAAAAACAGTAGTG-A--TAGTGGGAAAC--AGT-------GAC-GGTGGN-------A--A---C-TGCA-TCCAAAAGAGTGTG-AAGG-TT-CCA-----C--A--A---T-------NCA-----------CTG------CACTAAAGATGAT-CCAAGT--GCAGGGAACCT------G----ATAT---CA------CCAAAAG-ACTTTGCA-TCCTG-GAATACAC-TATTACAAGCTGC-AAAAATAAGAAAA--CATACT-GCAGTCCTACATA-TTGCAGATA-ACACCTCCAGA--AGGATGAAG-TGCCATGCTATCTCT--TACTACCACAGGACAATGCAGAAAAGCATATATTTTCCTTGAAATAAAAC---ACT-G-ACTG----CAATATTGAGCCAAGA-GCAG----ACGCA---A---GAGGAAAATG-T--AGTGGAAGAAAGTAGAAGGCCT---G-C----CAGACCCC--CCTCGGTATCCCCAGGGCATATTCTA-TGAT-ATCAAGTGCAT-TTTTGTGACNAAACAATCCAAATATATCAAAAGGAA-AATACACGAGTGTCCCTTATAA--TGCTCAGTTTTTTGCGGTCAAGGATGCTAA
gi|1 : CCTGCCAAA-TATTAACATGG-GCCTTTTTATGATTTTTAATTTTCTAATAATACAAA-----TTTTCCCATTGTTGTAACACATATCTTGTCTTGGTT-TGACTG-TA-CTTTAT-GATT-ATCA-AGAGTT-CTTTGTAC-TTAAATG-CAAA--A--TATAG-CTTTAAATCACAAGTACACAGCA----------ACACCCTATCACAGTGTTTATG-TAT--------------TTGTAGTTGTACTAGAATCCAGTAGAAAA-TTTTGA--AAACGCCA----CCGAGTAGAAATAAATTGATTAAAGAGTGTTAAAAGATGGAAAC-AAAGCAAGATA-GACATGATTTAACTT--CAG-TAAGA-GACAGTAGAAATA---ATAA--TGGTG-GTGGTAC-TGTTGA-TGGTAAAACCAGTAGTG-A--TAGTGGG-AAC--AGT-------TGT-GATGGG----------A---C-TGCA-TCCAAAACATTGCG-AAGG-TT---------------A---T-------CCT-----------TTG------TACTAAAGATGAT-CCAAGT--GCAGGAAACCT------G----ATTT---CA------CCTAAAG-ACTTTTCA-TCCAG-GAATAAAT-TGTTACAAGCTAC-AAATATAAGAAAA--TATGCT-GCAGTCCTGCATA-TTGCAGAC--ACAACTCC--A--AAGATGAAG-TGCCGTG-TATCTCTTATATTACCGCA-GACAATACAG--AAGC--ATATTTACCTTG-AATAAAAC---ACTGG-ACT-----CAATAGTGAGCCAAGA-GCAG----ATGCA---A---GAGG-AAATGCC--AGTGTAAGAGAGTAGAAGGCCTTTAG-CTATACAGATCCT--TTCCGGTATCCTCAGGGCCTA-TCTA-TGAT-ATCAAGTGCATATTTTGTGACCAAACAATCAAAATATTTTAAAAGGAAGAATACACGAGTGTCCCTAACAAAGTCCTCAG--TACTGCAATCA--GATGATAA
gi|10 : CAAA-TATTCACATGG-ACTTTTATCT-AGTTTTAATCTTCTAATAAGCCAAA-----ATTCCTCATTGTTGTAACACAT-TCTTGTCATGTGCGTGA-TGTTATTTTTAT-GATTAATGATAGAGGT-CTTTTTAT-ATAGATGCCAAACTA--TATAG-CTTTAAATTAC-AG-ACACAGCT----------AAAT-CTATCACAATG-TTCTGCTGTCTTTGCAGTTACA--------------AAAGTCC-GTAGAAAA-TTTAGAACAAATGCCAAT--AAGAGTAGAAATGAATTGATTAAAGAGcct
gi|11 : AAAGATGTAAAC-AAAGCAA-------TATGATGTAAC------------A-GACA--AGAAATA---ATAA--CGGTG-GC---AG-AGGTGA-TGGTAAAAACAATAGTG-A--TGGTGGGAA-C--AGT-------GAC-GGTGCT-------A--AGTAC-TGCA-TCCAGA-GAGTGTG-AAGG-TTTCCA-----C--A--A---T-------ACATTATCTA----CTG------CACTAATGATGAT-CTATGT--GGAGGGAACCC------G----ATAT---CA------CCAAAAG-ACTTTGCA-TCCTG-GAATACAC-TATTACAAGGTGC-AAAAATAAGAAAA--CATACT-GCAGTCTTACATA-at
gi|12 : atTTAC-AGTACACAACA----------ATATCCTATC-CA-TGTTTCTT-TATCTTTTCAGTCACAGTTTTAGTTGCATTAGAATCCAGTAGAAAA-TTTAGA--AAATGCCATGCACAGAGTAGAAGTAAATTGATTAAAGAGTGTTCAAAGATGGAAAC-AAAGCAAGACATGAT-TGGTTTAACTT--CAG-TACCA-GACAGTAGAAATA---ATAA--TAGTA-GTGACAG-TGGTAA-TGGTAA
gi|13 : GCCAAA-TATTAACATTG-GACTTTTTGTGATTTTTAATTTCCTAATAAAGCAAA-----TTTCCTCATTGTTGTA---CATATCTTGTCATAGGT-TGACTT-TA-CTTTAT-AATT-ATCA-AGAGTT-CTTTGTAC-ATATATG-CAAA--A--TATAG-CTTTGAATTAC-GGTACACAGCAATATATATATATATCCTACCAAAATGTTTCTG-TATCTTATCAGGTACAGTTGTAGTTGCATTAGAACCCAGTtattagatatactagacaccagtt
gi|14 : caTA-CACATG-TCTAACTT--CAGATAATT-TACACTA---------------TGCTGTGTGGTAGATAGTCG-TGG----AACAGT--TG-ACTTA-----AAAC--AGG-------G---GATGAC-------ACAA---C-TGCAATCGAAAAGAGCGTG-AAGG-TTGCCA-----C--A--AAGAT-------GCATGATACGTTTGCTGGC----CACTAAAGATGAT-CACAGTAGGCAGGGAACCTTGAATGG----AT-C---CA------CC-AAGG-ATCTTGAATTCCTG-GAATAC
gi|15 : AC-CATAACAAGCTGC-AAAA--AAAAAAC--CATACT-GCAgacat
gi|15 : AAAAAAAACCATACT-GCACTGAAATCAACATTGAGCCAAGA-GCAGTCAGATGTA---A---GAGGAAA-TG-TC-AGTGGAAGAAAGTAGAAGGCCT---T-C----CAGATCCT--CCTCGGTATCCCCTGGGCCTATT-TA-TGAT-AGCAAGTGCATATTTTATGACAActgaaatcaacattgagccaagagcagtcagatgtaagaggaaatgtcagtggaagaaagtagaaggccttccagatcctcctcggtatcccctgggcctatttatgatagcaagtgcatattttatgacaaca
gi|16 : accataacaagctgcaaAAA-TAGTAACATGGAGC--TTTTGCGATTTTAAATTTTCTAATAAAACAAAATTAATTTTCCCATTGTTGTAACACATATCTTGTCATGGTT-TTACTG-TA-CTTTAT-GATT-ATCA-AGAGTT-CTTTGTAC-ATAAATG-CAAA--A--CAGAG-CTTTAA------AGTACACAGGA----------AAATCca
gi|17 : tCCTGTCAAAATAT--ACATGGTGC----TTGTGTATTTTAATAATCTAATCAAGCAAA-----TT--CCCATT-TTGTAACACATTTGTT-TCATGGAT--GACT--TA-CTTTATTGATT-ATCA-AGAGTTTCTTTGTACCAAAAATG-CAAA--AATTATAGGCTTTGAATTAC-AGTACACAGCA----------gt
gi|18 : catCCTGTCAAAATAT--ACATGGTGC----TTGTGTATTTTAATAATCTAATCAAGCAAA-----TT--CCCATT-TTGTAACACATTTGTT-TCATGGAT--GACT--TA-CTTTATTGATT-ATCA-AGAGTTTCTTTGTACCAAAAATG-CAAA--AATTATAGGCTTTGAATTAC-AGTACACAGCA----------
gi|19 : catAGA-ATAG----ATGCATTCAT--GAGGAAAATG-T--AGTGGAAGAA-GTAGAAGGCTT---G-C-----AGACGCC--TCTCGGTATACC-AGGGCATATT--A-TGAT-ATCAAGTGCAT-TTT--TGACAAAA
gi|2 : ----CAGAG-AAAACTCTATTGATTAAAGATTGTTCAAAGATGGAAAC-AAAGCAAGATA-GACATGATTTAACTTTTCAA-TAAGAAGGCAGTAGAAATA---GTAAAATGGTG-GTGATAG-TGGTAA-TGGTAAAAACAGTAGTGTA--TAGTGGGAAACCAAGTTTTTGGGGAC-GGGGGGGTTTTGCA--A---C-TACA-TCAAAAAAAGTGTG-AGGT-TT-CCAAAATGC--ATTA---T-------TCA-----------CTG------CACTAAAGAAGATTCCAAGT--GC--GGAAACT------G----CTAT---CAGAGACTTTAGATG-ACTTTGCG-TCCTTCGAATACAC-TATTACAAGCTGC-AAAA-TAAGAAAA--CA-ACT-GCAGTCCTAC-TA-TAGCAGATA--------CA----------AAG-TGC-ATGCTATCTCT--TACCACCA---GACAATGCAGAAA-GCATAT--TTTCCTTGAA-TACAAC---ACT-G-ACTG----CAATATTGAACGAAGAAGCAG----ACGCA---T---GAGGAAAATT-G--AGTGGAAGAAAG--GAAGGCCT---G-C----CAGCTCCT--CCTCGATATCCCCAGGACATATTCTAATGATTATCAAGTGCAT-TTTTGTGACCAAACAATCCAAATATATCAAAAGGAA-AATACACGAGTGTCCCTTATAA--TGCTCAGTTTTTTGCGGTCAAGGATGCTAAaa
gi|20 : AGA-ATAG----ATGCATTCAT--GAGGAAAATG-T--AGTGGAAGAA-GTAGAAGGCTT---G-C-----AGACGCC--TCTCGGTATACC-AGGGCATATT--A-TGAT-ATCAAGTGCAT-TTT--TGACAAAAtttg
gi|21 : ACTAAAGATGAG-CTATGT--GCAAGGAACCT------G----ATAT---CA------CCAAAAG-ACTAAACA-TCCTG-GAATACAC-TATTATAAGGTGC-AAaa
gi|22 : TTGTA-TCCTT-GAATACAC-TATTACAAGCCGCAAAAAATAAATAAT--CATACT-GTAGTCCAACATA-TTTCAGAT
gi|23 : TTGTTGTAACACATATCTTGTCATGGGT-TGACTG-TA-CTTTGC-GATT-AT
gi|3 : ----CAGAG-AAAACTCTATTGATTAAAGATTGTTCAAAGATGGAAAC-AAAGCAAGATA-GACATGATTTAACTTTTCAA-TAAGAAGGCAGTAGAAATA---GTAAAATGGTG-GTGATAG-TGGTAA-TGGTAAAAACAGTAGTGTA--TAGTGGGAAACCAAGTTTTTGGGGAC-GGGGGGGTTTTGCA--A---C-TACA-TCAAAAAAAGTGTG-AGGT-TT-CCAAAATGC--ATTA---T-------TCA-----------CTG------CACTAAAGAAGATTCCAAGT--GC--GGAAACT------G----CTAT---CAGAGACTTTAGATG-ACTTTGCG-TCCTTCGAATACAC-TATTACAAGCTGC-AAAA-TAAGAAAA--CA-ACT-GCAGTCCTAC-TA-TAGCAGATA--------CA----------AAG-TGC-ATGCTATCTCT--TACCACCA---GACAATGCAGAAA-GCATAT--TTTCCTTGAA-TACAAC---ACT-G-ACTG----CAATATTGAACGAAGAAGCAG----ACGCA---T---GAGGAAAATT-G--AGTGGAAGAAAG--GAAGGCCT---G-C----CAGCTCCT--CCTCGATATCCCCAGGACATATTCTAATGATTATCAAGTGCAT-TTTTGTGACCAAACAATCCAAATATATCAAAAGGAA-AATACACGAGTGTCCCTTATAA--TGCTCAGTTTTTTGCGGTCAAGGATGCTAA
gi|4 : -----TTTTCCTATTCTTGCAACACATATCTTGTCATGGTT-TGACTG-TA-CTTTAT-GATG-AAAA-AGAGAT-ATTTGCAC-ATAAATG-CGAA--A--TATAG-CTTTAAATCAC-AGTACACAGCG----------ATATCCTATCACAATGTTTCTG-TATATTTTCAGGTACAGTTATAATTGCACTTGAATCAAGTAGAACA-TTTAGA--AAACGCTA----CAGAGTAGAAATAGATTGATTAAAGAGTGTTCAGATATGGAAAC-AAATCAAGATA-TACATGG-TTAACTT--CAG-TAAAA-GACAGGTGAAATAATGGTAG--TGGTG-GTGGTAG-TGGTGA-TGGTAAAAGCAGTAGTG-A--TAA-AGGAAAC--AGT-------GAC-GGT-GC-------A--A---C-TGCA-TCAAAAAGAGTGTG-ATGGTTT-CCA-----C--A--A---TGCATTACCCA-----------CTG------CAC-AAAGACGAT-CCAAGT--GCAGGGAACCT------G----ATAT---CA------TCAAAAG-ACTTTGCA-TCCTG-GAATACAC-CATAACAAGCTGC-AAAA--AAAAAAC--CATACT-GCAtttg
gi|5 : TTGTAGTTGCACTAGAATCCAGTAGAAAATTTTAGG--AAACGCCA----CAGAGTAGAAATAAAATGATGAAAG-GTGTTCAAAGATGGAAAC-AAAACAAAATA-ACCATGATTTAACTT--C-C-TAAGA-GACAGAAGAAATA---GTAA--TGGTG-GTGGTAG-TGGTGATTGATAAAAACAATAGTT-A--TAGTGGGAAAC--AGT-------GAC-GGTGAA-------A--C---T-TACA-TCCAAAAGAGTGTG-AAGG-CT-CCA-----C--A--A---T-------GCA-----------TTATCTACTCACTAAAGATGAT-CCAAGT--GCAGGGAACCT------G----ATAT---CA------CCAAAAACACTTTGCA-TCCCG-GAATACACTTTTTACAG--TGC-AAAAATAAGAAAAACCACACT-GCAGTCCTAC-TAGGTGCAGATA-ACACCTCCAGA--AGGATGAAG-TGCCA-GC-ATCT------CTACCACAGGACAATGCAG-AAAGCATATATTTTCCGGGAAATAAAAC---
gi|6 : tcTTGTAGTTGCACTAGAATCCAGTAGAAAATTTTAGG--AAACGCCA----CAGAGTAGAAATAAAATGATGAAAG-GTGTTCAAAGATGGAAAC-AAAACAAAATA-ACCATGATTTAACTT--C-C-TAAGA-GACAGAAGAAATA---GTAA--TGGTG-GTGGTAG-TGGTGATTGATAAAAACAATAGTT-A--TAGTGGGAAAC--AGT-------GAC-GGTGAA-------A--C---T-TACA-TCCAAAAGAGTGTG-AAGG-CT-CCA-----C--A--A---T-------GCA-----------TTATCTACTCACTAAAGATGAT-CCAAGT--GCAGGGAACCT------G----ATAT---CA------CCAAAAACACTTTGCA-TCCCG-GAATACACTTTTTACAG--TGC-AAAAATAAGAAAAACCACACT-GCAGTCCTAC-TAGGTGCAGATA-ACACCTCCAGA--AGGATGAAG-TGCCA-GC-ATCT------CTACCACAGGACAATGCAG-AAAGCATATATTTTCCGGGAAATAAAAC---
gi|7 : tcTGCCAAA-TATTAACACGG-GGCTTTTTGCAAGTTTTAATTTTCTAATAAAGCAAA-----ATTCCTCATTGCTGTAGCACATATATTGTCATGGGT-TGACTG-TA-CTTTAT-GATT-ATGA-AAAGTT-CTTTGTAC-TTGA-TG-CTAA--C--TATAG-CTTTAAATTAC-AGTACAAAGCA----------ATATCCTATCACAATGTTTCTG-TGTCTTTTCAGTTACAGTTGTAGTTGCTCTAGAATCTAGTGGAAAA-TTTAGA--AAATACCA----CAGAGTAGAAATGAATTGATTGAAGAGTGTTCAAAGATGGAAAC-AAAGCAAGATA-GGAATGGTTTAACTT--CAG-TAACA-GACAGTAGAAATA---ATAA--CGGTG-GTGGCAG-TGGAGA-TGGTAAAACCAGTAGTG-A--TAGTGGG-AAC--AGT-------GAC-GGT-GC-------A--A---T-TGCA-TCCAAAAGAGTGCG-
gi|8 : G-A--TGGTGG-AAAC----T-------GACAGGTTGC-------T--A---CATGCA-TCCAAATGAGGGTGTAAGG-TT-CCA-----CTCA--A---T-------GCATATCCCA----CTG------CACTAAA-ATGA--CCAAGT--GCAGGGAAACC------GGTGGATATTTTCA------TCAAAAG-ACCT-GCA-TCCTG-CA-TACAT-TATTACAAACAGC-AAAA-TAAGAAAA---ATACTTGCAGCCTTACATA-GTGCAGGGATACACCTCCAGATTAGGATGAAGATGC--TGTTGTCTCT--TAC---CACAGGACAATGCAGAAAA-CA-----------------AAAAC---ACC-----------CAA----GAGCC-AGA-GCAG----ATGAA---AAATGAGG-AAATG-TCAATTGGAAGAAA-T-GA-----T---GCC----CAGACCCCTTCCTCGGTATACCCAGGgt
gi|9 : AATATGG-GGCTTTTTGTTCGTTTTAATTTTCTAATAAAGCAAA-----ATTCCTCATTGTTGTAACACATATCTTGTCATGGGT-TGACTG-TA-TTTTAT-AATT-ATGA-AGAGTT-CTTTGTAC--TAGATG-CCAA--A--TATAG-CTCTGAATTAC-AGTACACAGCA----------ATATCCTATC-C-ACGTTTCTG-TATCTTTTCAGTTACAGTTGTAGTTGCACT--------------AA-TT-----------CC--------AGTAGAAATAAATTGATTAAAGAGTGTCCATTGATGGAAACAAAAGTAAGATG-GACATGGTCTAACTT--CAG-cc
Alignments
lowQualScore : 1 1111 11111 11 11 1111111111 1 1111 11 11 11 2222222 333333333333333 7777777777777777777777777777777777777777777777 111111 222222 1 11 1 11 11 1111 111 1111 111 1 11 111 22222222222 1 1111 3333333 1111 1111 111 11111 1111 1 1 1 11
lowQualScore : 1 5 7777 222 11111 22 2 1 0 44 66 4 8 4 1 4 8 11 4 66 22 8 4 7777777777 5 0 5 0 1 0 0 66 4444 0 0 4 3 0 00 555 1 8 1 777 11 4 4 8 8 55 0 11 6666666 4 2 333333333333333 4 4 4 4 8 7777777777777777777777777777777777777777777777 8 55 0 111111 8888 777 333333 8 3 7 7 0 3 5 11 3 4 5 11 44 2 9999 1 6 999 88 4444 4 222 5 7 3 44 66 1 8 000 44444444444 3 0 0 1 2222 1 9999999 5 9999 2222 000 5 66666 77 0 4 8888 3 3 88 1 3 88 7 7
lowQualScore : . . .... ... ..... .. . . . .. .. . . . . . . .. . .. .. . . .......... . . . . . . . .. .... . . . . . .. ... . . . ... .. . . . . .. . .. ....... . . ............... . . . . . .............................................. . .. . ...... .... ... ...... . . . . . . . .. . . . .. .. . .... . . ... .. .... . ... . . . .. .. . . ... ........... . . . . .... . ....... . .... .... ... . ..... .. . . .... . . .. . . .. . .
lowQualScore : 4 0 1111 999 11111 88 5 1 7 88 55 0 0 0 1 4 9 11 4 11 22 9 0 5555555555 0 1 7 7 3 7 0 99 0000 8 8 0 6 9 00 555 6 0 0 000 00 0 0 0 0 55 8 00 0000000 0 5 888888888888888 0 0 0 4 9 7777777777777777777777777777777777777777777777 0 55 8 555555 5555 000 000000 0 6 3 3 5 6 5 00 8 0 5 33 00 5 0000 0 7 888 33 8888 2 333 5 3 2 33 00 4 4 000 66666666666 8 6 8 4 1111 4 9999999 0 3333 0000 000 7 44444 99 7 3 3333 3 3 33 0 3 33 3 3
consensus : CCTGCCAAA-TATTAACATGG-GCCTTTTTGTGANTTTTAATTTTCTAATAAAGCAAA-----TTTCCCCATTGTTGTAACACATATCTTGTCATGGGT-TGACTG-TA-CTTTAT-GATT-ATCA-AGAGTT-CTTTGTAC-ATAAATG-CAAA--A--TATAG-CTTTGAATTAC-AGTACACAGCA----------ATATCCTATCACAATGTTTCTG-TATCTTTTCAGTTACAGTTGTAGTTGCACTAGAATCCAGTAGAAAA-TTTAGA--AAACGCCA----CAGAGTAGAAATAAATTGATTAAAGAGTGTTCAAAGATGGAAAC-AAAGCAAGATA-GACATGATTTAACTT--CAG-TAAGA-GACAGTAGAAATA---GTAA--TGGTG-GTGGTAG-TGGTGA-TGGTAAAAACAGTAGTG-A--TAGTGGGAAAC--AGT-------GAC-GGTGGN-------A--A---C-TGCA-TCCAAAAGAGTGTG-AAGG-TT-CCA-----C--A--A---T-------NCA-----------CTG------CACTAAAGATGAT-CCAAGT--GCAGGGAACCT------G----ATAT---CA------CCAAAAG-ACTTTGCA-TCCTG-GAATACAC-TATTACAAGCTGC-AAAAATAAGAAAA--CATACT-GCAGTCCTACATA-TTGCAGATA-ACACCTCCAGA--AGGATGAAG-TGCCATGCTATCTCT--TACTACCACAGGACAATGCAGAAAAGCATATATTTTCCTTGAAATAAAAC---ACT-G-ACTG----CAATATTGAGCCAAGA-GCAG----ACGCA---A---GAGGAAAATG-T--AGTGGAAGAAAGTAGAAGGCCT---G-C----CAGACCCC--CCTCGGTATCCCCAGGGCATATTCTA-TGAT-ATCAAGTGCAT-TTTTGTGACNAAACAATCCAAATATATCAAAAGGAA-AATACACGAGTGTCCCTTATAA--TGCTCAGTTTTTTGCGGTCAAGGATGCTAA
Reference ( family-443 ) : CCTGCCAAA-TATTAACATGG-GCCTTTTTGTGANTTTTAATTTTCTAATAAAGCAAA-----TTTCCCCATTGTTGTAACACATATCTTGTCATGGGT-TGACTG-TA-CTTTAT-GATT-ATCA-AGAGTT-CTTTGTAC-ATAAATG-CAAA--A--TATAG-CTTTGAATTAC-AGTACACAGCA----------ATATCCTATCACAATGTTTCTG-TATCTTTTCAGTTACAGTTGTAGTTGCACTAGAATCCAGTAGAAAA-TTTAGA--AAACGCCA----CAGAGTAGAAATAAATTGATTAAAGAGTGTTCAAAGATGGAAAC-AAAGCAAGATA-GACATGATTTAACTT--CAG-TAAGA-GACAGTAGAAATA---GTAA--TGGTG-GTGGTAG-TGGTGA-TGGTAAAAACAGTAGTG-A--TAGTGGGAAAC--AGT-------GAC-GGTGGN-------A--A---C-TGCA-TCCAAAAGAGTGTG-AAGG-TT-CCA-----C--A--A---T-------NCA-----------CTG------CACTAAAGATGAT-CCAAGT--GCAGGGAACCT------G----ATAT---CA------CCAAAAG-ACTTTGCA-TCCTG-GAATACAC-TATTACAAGCTGC-AAAAATAAGAAAA--CATACT-GCAGTCCTACATA-TTGCAGATA-ACACCTCCAGA--AGGATGAAG-TGCCATGCTATCTCT--TACTACCACAGGACAATGCAGAAAAGCATATATTTTCCTTGAAATAAAAC---ACT-G-ACTG----CAATATTGAGCCAAGA-GCAG----ACGCA---A---GAGGAAAATG-T--AGTGGAAGAAAGTAGAAGGCCT---G-C----CAGACCCC--CCTCGGTATCCCCAGGGCATATTCTA-TGAT-ATCAAGTGCAT-TTTTGTGACNAAACAATCCAAATATATCAAAAGGAA-AATACACGAGTGTCCCTTATAA--TGCTCAGTTTTTTGCGGTCAAGGATGCTAA
gi|1 : CCTGCCAAA-TATTAACATGG-GCCTTTTTATGATTTTTAATTTTCTAATAATACAAA-----TTTTCCCATTGTTGTAACACATATCTTGTCTTGGTT-TGACTG-TA-CTTTAT-GATT-ATCA-AGAGTT-CTTTGTAC-TTAAATG-CAAA--A--TATAG-CTTTAAATCACAAGTACACAGCA----------ACACCCTATCACAGTGTTTATG-TAT--------------TTGTAGTTGTACTAGAATCCAGTAGAAAA-TTTTGA--AAACGCCA----CCGAGTAGAAATAAATTGATTAAAGAGTGTTAAAAGATGGAAAC-AAAGCAAGATA-GACATGATTTAACTT--CAG-TAAGA-GACAGTAGAAATA---ATAA--TGGTG-GTGGTAC-TGTTGA-TGGTAAAACCAGTAGTG-A--TAGTGGG-AAC--AGT-------TGT-GATGGG----------A---C-TGCA-TCCAAAACATTGCG-AAGG-TT---------------A---T-------CCT-----------TTG------TACTAAAGATGAT-CCAAGT--GCAGGAAACCT------G----ATTT---CA------CCTAAAG-ACTTTTCA-TCCAG-GAATAAAT-TGTTACAAGCTAC-AAATATAAGAAAA--TATGCT-GCAGTCCTGCATA-TTGCAGAC--ACAACTCC--A--AAGATGAAG-TGCCGTG-TATCTCTTATATTACCGCA-GACAATACAG--AAGC--ATATTTACCTTG-AATAAAAC---ACTGG-ACT-----CAATAGTGAGCCAAGA-GCAG----ATGCA---A---GAGG-AAATGCC--AGTGTAAGAGAGTAGAAGGCCTTTAG-CTATACAGATCCT--TTCCGGTATCCTCAGGGCCTA-TCTA-TGAT-ATCAAGTGCATATTTTGTGACCAAACAATCAAAATATTTTAAAAGGAAGAATACACGAGTGTCCCTAACAAAGTCCTCAG--TACTGCAATCA--GATGATAA
gi|10 : CAAA-TATTCACATGG-ACTTTTATCT-AGTTTTAATCTTCTAATAAGCCAAA-----ATTCCTCATTGTTGTAACACAT-TCTTGTCATGTGCGTGA-TGTTATTTTTAT-GATTAATGATAGAGGT-CTTTTTAT-ATAGATGCCAAACTA--TATAG-CTTTAAATTAC-AG-ACACAGCT----------AAAT-CTATCACAATG-TTCTGCTGTCTTTGCAGTTACA--------------AAAGTCC-GTAGAAAA-TTTAGAACAAATGCCAAT--AAGAGTAGAAATGAATTGATTAAAGAGcct
gi|11 : AAAGATGTAAAC-AAAGCAA-------TATGATGTAAC------------A-GACA--AGAAATA---ATAA--CGGTG-GC---AG-AGGTGA-TGGTAAAAACAATAGTG-A--TGGTGGGAA-C--AGT-------GAC-GGTGCT-------A--AGTAC-TGCA-TCCAGA-GAGTGTG-AAGG-TTTCCA-----C--A--A---T-------ACATTATCTA----CTG------CACTAATGATGAT-CTATGT--GGAGGGAACCC------G----ATAT---CA------CCAAAAG-ACTTTGCA-TCCTG-GAATACAC-TATTACAAGGTGC-AAAAATAAGAAAA--CATACT-GCAGTCTTACATA-at
gi|12 : atTTAC-AGTACACAACA----------ATATCCTATC-CA-TGTTTCTT-TATCTTTTCAGTCACAGTTTTAGTTGCATTAGAATCCAGTAGAAAA-TTTAGA--AAATGCCATGCACAGAGTAGAAGTAAATTGATTAAAGAGTGTTCAAAGATGGAAAC-AAAGCAAGACATGAT-TGGTTTAACTT--CAG-TACCA-GACAGTAGAAATA---ATAA--TAGTA-GTGACAG-TGGTAA-TGGTAA
gi|13 : GCCAAA-TATTAACATTG-GACTTTTTGTGATTTTTAATTTCCTAATAAAGCAAA-----TTTCCTCATTGTTGTA---CATATCTTGTCATAGGT-TGACTT-TA-CTTTAT-AATT-ATCA-AGAGTT-CTTTGTAC-ATATATG-CAAA--A--TATAG-CTTTGAATTAC-GGTACACAGCAATATATATATATATCCTACCAAAATGTTTCTG-TATCTTATCAGGTACAGTTGTAGTTGCATTAGAACCCAGTtattagatatactagacaccagtt
gi|14 : caTA-CACATG-TCTAACTT--CAGATAATT-TACACTA---------------TGCTGTGTGGTAGATAGTCG-TGG----AACAGT--TG-ACTTA-----AAAC--AGG-------G---GATGAC-------ACAA---C-TGCAATCGAAAAGAGCGTG-AAGG-TTGCCA-----C--A--AAGAT-------GCATGATACGTTTGCTGGC----CACTAAAGATGAT-CACAGTAGGCAGGGAACCTTGAATGG----AT-C---CA------CC-AAGG-ATCTTGAATTCCTG-GAATAC
gi|15 : AC-CATAACAAGCTGC-AAAA--AAAAAAC--CATACT-GCAgacat
gi|15 : AAAAAAAACCATACT-GCACTGAAATCAACATTGAGCCAAGA-GCAGTCAGATGTA---A---GAGGAAA-TG-TC-AGTGGAAGAAAGTAGAAGGCCT---T-C----CAGATCCT--CCTCGGTATCCCCTGGGCCTATT-TA-TGAT-AGCAAGTGCATATTTTATGACAActgaaatcaacattgagccaagagcagtcagatgtaagaggaaatgtcagtggaagaaagtagaaggccttccagatcctcctcggtatcccctgggcctatttatgatagcaagtgcatattttatgacaaca
gi|16 : accataacaagctgcaaAAA-TAGTAACATGGAGC--TTTTGCGATTTTAAATTTTCTAATAAAACAAAATTAATTTTCCCATTGTTGTAACACATATCTTGTCATGGTT-TTACTG-TA-CTTTAT-GATT-ATCA-AGAGTT-CTTTGTAC-ATAAATG-CAAA--A--CAGAG-CTTTAA------AGTACACAGGA----------AAATCca
gi|17 : tCCTGTCAAAATAT--ACATGGTGC----TTGTGTATTTTAATAATCTAATCAAGCAAA-----TT--CCCATT-TTGTAACACATTTGTT-TCATGGAT--GACT--TA-CTTTATTGATT-ATCA-AGAGTTTCTTTGTACCAAAAATG-CAAA--AATTATAGGCTTTGAATTAC-AGTACACAGCA----------gt
gi|18 : catCCTGTCAAAATAT--ACATGGTGC----TTGTGTATTTTAATAATCTAATCAAGCAAA-----TT--CCCATT-TTGTAACACATTTGTT-TCATGGAT--GACT--TA-CTTTATTGATT-ATCA-AGAGTTTCTTTGTACCAAAAATG-CAAA--AATTATAGGCTTTGAATTAC-AGTACACAGCA----------
gi|19 : catAGA-ATAG----ATGCATTCAT--GAGGAAAATG-T--AGTGGAAGAA-GTAGAAGGCTT---G-C-----AGACGCC--TCTCGGTATACC-AGGGCATATT--A-TGAT-ATCAAGTGCAT-TTT--TGACAAAA
gi|2 : ----CAGAG-AAAACTCTATTGATTAAAGATTGTTCAAAGATGGAAAC-AAAGCAAGATA-GACATGATTTAACTTTTCAA-TAAGAAGGCAGTAGAAATA---GTAAAATGGTG-GTGATAG-TGGTAA-TGGTAAAAACAGTAGTGTA--TAGTGGGAAACCAAGTTTTTGGGGAC-GGGGGGGTTTTGCA--A---C-TACA-TCAAAAAAAGTGTG-AGGT-TT-CCAAAATGC--ATTA---T-------TCA-----------CTG------CACTAAAGAAGATTCCAAGT--GC--GGAAACT------G----CTAT---CAGAGACTTTAGATG-ACTTTGCG-TCCTTCGAATACAC-TATTACAAGCTGC-AAAA-TAAGAAAA--CA-ACT-GCAGTCCTAC-TA-TAGCAGATA--------CA----------AAG-TGC-ATGCTATCTCT--TACCACCA---GACAATGCAGAAA-GCATAT--TTTCCTTGAA-TACAAC---ACT-G-ACTG----CAATATTGAACGAAGAAGCAG----ACGCA---T---GAGGAAAATT-G--AGTGGAAGAAAG--GAAGGCCT---G-C----CAGCTCCT--CCTCGATATCCCCAGGACATATTCTAATGATTATCAAGTGCAT-TTTTGTGACCAAACAATCCAAATATATCAAAAGGAA-AATACACGAGTGTCCCTTATAA--TGCTCAGTTTTTTGCGGTCAAGGATGCTAAaa
gi|20 : AGA-ATAG----ATGCATTCAT--GAGGAAAATG-T--AGTGGAAGAA-GTAGAAGGCTT---G-C-----AGACGCC--TCTCGGTATACC-AGGGCATATT--A-TGAT-ATCAAGTGCAT-TTT--TGACAAAAtttg
gi|21 : ACTAAAGATGAG-CTATGT--GCAAGGAACCT------G----ATAT---CA------CCAAAAG-ACTAAACA-TCCTG-GAATACAC-TATTATAAGGTGC-AAaa
gi|22 : TTGTA-TCCTT-GAATACAC-TATTACAAGCCGCAAAAAATAAATAAT--CATACT-GTAGTCCAACATA-TTTCAGAT
gi|23 : TTGTTGTAACACATATCTTGTCATGGGT-TGACTG-TA-CTTTGC-GATT-AT
gi|3 : ----CAGAG-AAAACTCTATTGATTAAAGATTGTTCAAAGATGGAAAC-AAAGCAAGATA-GACATGATTTAACTTTTCAA-TAAGAAGGCAGTAGAAATA---GTAAAATGGTG-GTGATAG-TGGTAA-TGGTAAAAACAGTAGTGTA--TAGTGGGAAACCAAGTTTTTGGGGAC-GGGGGGGTTTTGCA--A---C-TACA-TCAAAAAAAGTGTG-AGGT-TT-CCAAAATGC--ATTA---T-------TCA-----------CTG------CACTAAAGAAGATTCCAAGT--GC--GGAAACT------G----CTAT---CAGAGACTTTAGATG-ACTTTGCG-TCCTTCGAATACAC-TATTACAAGCTGC-AAAA-TAAGAAAA--CA-ACT-GCAGTCCTAC-TA-TAGCAGATA--------CA----------AAG-TGC-ATGCTATCTCT--TACCACCA---GACAATGCAGAAA-GCATAT--TTTCCTTGAA-TACAAC---ACT-G-ACTG----CAATATTGAACGAAGAAGCAG----ACGCA---T---GAGGAAAATT-G--AGTGGAAGAAAG--GAAGGCCT---G-C----CAGCTCCT--CCTCGATATCCCCAGGACATATTCTAATGATTATCAAGTGCAT-TTTTGTGACCAAACAATCCAAATATATCAAAAGGAA-AATACACGAGTGTCCCTTATAA--TGCTCAGTTTTTTGCGGTCAAGGATGCTAA
gi|4 : -----TTTTCCTATTCTTGCAACACATATCTTGTCATGGTT-TGACTG-TA-CTTTAT-GATG-AAAA-AGAGAT-ATTTGCAC-ATAAATG-CGAA--A--TATAG-CTTTAAATCAC-AGTACACAGCG----------ATATCCTATCACAATGTTTCTG-TATATTTTCAGGTACAGTTATAATTGCACTTGAATCAAGTAGAACA-TTTAGA--AAACGCTA----CAGAGTAGAAATAGATTGATTAAAGAGTGTTCAGATATGGAAAC-AAATCAAGATA-TACATGG-TTAACTT--CAG-TAAAA-GACAGGTGAAATAATGGTAG--TGGTG-GTGGTAG-TGGTGA-TGGTAAAAGCAGTAGTG-A--TAA-AGGAAAC--AGT-------GAC-GGT-GC-------A--A---C-TGCA-TCAAAAAGAGTGTG-ATGGTTT-CCA-----C--A--A---TGCATTACCCA-----------CTG------CAC-AAAGACGAT-CCAAGT--GCAGGGAACCT------G----ATAT---CA------TCAAAAG-ACTTTGCA-TCCTG-GAATACAC-CATAACAAGCTGC-AAAA--AAAAAAC--CATACT-GCAtttg
gi|5 : TTGTAGTTGCACTAGAATCCAGTAGAAAATTTTAGG--AAACGCCA----CAGAGTAGAAATAAAATGATGAAAG-GTGTTCAAAGATGGAAAC-AAAACAAAATA-ACCATGATTTAACTT--C-C-TAAGA-GACAGAAGAAATA---GTAA--TGGTG-GTGGTAG-TGGTGATTGATAAAAACAATAGTT-A--TAGTGGGAAAC--AGT-------GAC-GGTGAA-------A--C---T-TACA-TCCAAAAGAGTGTG-AAGG-CT-CCA-----C--A--A---T-------GCA-----------TTATCTACTCACTAAAGATGAT-CCAAGT--GCAGGGAACCT------G----ATAT---CA------CCAAAAACACTTTGCA-TCCCG-GAATACACTTTTTACAG--TGC-AAAAATAAGAAAAACCACACT-GCAGTCCTAC-TAGGTGCAGATA-ACACCTCCAGA--AGGATGAAG-TGCCA-GC-ATCT------CTACCACAGGACAATGCAG-AAAGCATATATTTTCCGGGAAATAAAAC---
gi|6 : tcTTGTAGTTGCACTAGAATCCAGTAGAAAATTTTAGG--AAACGCCA----CAGAGTAGAAATAAAATGATGAAAG-GTGTTCAAAGATGGAAAC-AAAACAAAATA-ACCATGATTTAACTT--C-C-TAAGA-GACAGAAGAAATA---GTAA--TGGTG-GTGGTAG-TGGTGATTGATAAAAACAATAGTT-A--TAGTGGGAAAC--AGT-------GAC-GGTGAA-------A--C---T-TACA-TCCAAAAGAGTGTG-AAGG-CT-CCA-----C--A--A---T-------GCA-----------TTATCTACTCACTAAAGATGAT-CCAAGT--GCAGGGAACCT------G----ATAT---CA------CCAAAAACACTTTGCA-TCCCG-GAATACACTTTTTACAG--TGC-AAAAATAAGAAAAACCACACT-GCAGTCCTAC-TAGGTGCAGATA-ACACCTCCAGA--AGGATGAAG-TGCCA-GC-ATCT------CTACCACAGGACAATGCAG-AAAGCATATATTTTCCGGGAAATAAAAC---
gi|7 : tcTGCCAAA-TATTAACACGG-GGCTTTTTGCAAGTTTTAATTTTCTAATAAAGCAAA-----ATTCCTCATTGCTGTAGCACATATATTGTCATGGGT-TGACTG-TA-CTTTAT-GATT-ATGA-AAAGTT-CTTTGTAC-TTGA-TG-CTAA--C--TATAG-CTTTAAATTAC-AGTACAAAGCA----------ATATCCTATCACAATGTTTCTG-TGTCTTTTCAGTTACAGTTGTAGTTGCTCTAGAATCTAGTGGAAAA-TTTAGA--AAATACCA----CAGAGTAGAAATGAATTGATTGAAGAGTGTTCAAAGATGGAAAC-AAAGCAAGATA-GGAATGGTTTAACTT--CAG-TAACA-GACAGTAGAAATA---ATAA--CGGTG-GTGGCAG-TGGAGA-TGGTAAAACCAGTAGTG-A--TAGTGGG-AAC--AGT-------GAC-GGT-GC-------A--A---T-TGCA-TCCAAAAGAGTGCG-
gi|8 : G-A--TGGTGG-AAAC----T-------GACAGGTTGC-------T--A---CATGCA-TCCAAATGAGGGTGTAAGG-TT-CCA-----CTCA--A---T-------GCATATCCCA----CTG------CACTAAA-ATGA--CCAAGT--GCAGGGAAACC------GGTGGATATTTTCA------TCAAAAG-ACCT-GCA-TCCTG-CA-TACAT-TATTACAAACAGC-AAAA-TAAGAAAA---ATACTTGCAGCCTTACATA-GTGCAGGGATACACCTCCAGATTAGGATGAAGATGC--TGTTGTCTCT--TAC---CACAGGACAATGCAGAAAA-CA-----------------AAAAC---ACC-----------CAA----GAGCC-AGA-GCAG----ATGAA---AAATGAGG-AAATG-TCAATTGGAAGAAA-T-GA-----T---GCC----CAGACCCCTTCCTCGGTATACCCAGGgt
gi|9 : AATATGG-GGCTTTTTGTTCGTTTTAATTTTCTAATAAAGCAAA-----ATTCCTCATTGTTGTAACACATATCTTGTCATGGGT-TGACTG-TA-TTTTAT-AATT-ATGA-AGAGTT-CTTTGTAC--TAGATG-CCAA--A--TATAG-CTCTGAATTAC-AGTACACAGCA----------ATATCCTATC-C-ACGTTTCTG-TATCTTTTCAGTTACAGTTGTAGTTGCACT--------------AA-TT-----------CC--------AGTAGAAATAAATTGATTAAAGAGTGTCCATTGATGGAAACAAAAGTAAGATG-GACATGGTCTAACTT--CAG-cc
blockSeqs : A T ACT GAT ATTAA TC G A GT GT T T A G T T CA C CT AT G . ATATATATAT A C T T AC TGCA A T TT AGA C A T ATG AA T A T T CT CA TTTTGGG A G GGTTTTGCAA A A T T T CAAAGATGCATGATACGTTTGCTGGC T AG TGAATG GTGG TTT GAGACT C T C T A A AC T T A GG TA C GATT G A AT CT CT C CAG A A T AT TT A A CAT GCACTGAAAT C A TCAG T TTCAT A TCA AGTA . C C TT C CTAA T A TA A . . T A
blockSeqs : A T GAC GAT . TC G A T T . T . C . T CA . . AT G . . A . T T . AT . . TT AG T A T . AA . . T T . CA TTTTGGG . G GGTTTTGCAA . . . . G CTCAATGCATATCCCACTG T . . . . GAGACT C . C T . A AC T . A GG A C GA G . AT CT CT C CAG A A T AT TT A A . GACTG T A . T TTCAT A TC GTA . . C . C CTAA T . TG A . . T A
blockSeqs : . T AGC GTA . TT G T T G . . . C . . A . . . . . . A . G . . . . . . AA G . T . . . . . . . . . . G TAAGTA . . . . . CAATACATTATCTACTG . . . . . . . . . . . A . T . A T A C GA G . CA TT CT T CAG A A T . GG A A . GACTG T . . C AAAT A T GTA . . C . C TA . . TG C
blockSeqs : . T TGC GTA . TT G T T G . . . C . . A . . . . . . A . G . . . . . . AA G . T . . . . . . . . . . G CACAA . . . . . AAATGCATTATTCACTG . . . . . . . . . . . A . T . . T . . . . . CA C . T . . . T . GG A . . . . . . T A A G AG . . C . C A . . . A
blockSeqs : . . TGC AAG . TC C A T G . . . C . . A . . . . . . . . T . . . . . . AG A . G . . . . . . . . . . G CAA . . . . . AAATGCATTATTCACTG . . . . . . . . . . . . . C . . T . . . . . T C . . . . . . . . A . . . . C T A T AG . . . . . A . . . C
blockSeqs : . . GGC TCG . TC G A T G . . . A . . A . . . . . . . . T . . . . . . AG G . A . . . . . . . . . . G AAC . . . . . CAATGCATTACCCACTG . . . . . . . . . . . . . C . . G . . . . . T T . G AT . . . . .
blockSeqs : GGC AG . . G A T G . . . G . . T . . . . . . . . . . . . AG G . A . . . . . . . . . . T AAC . . . . . CAATGCATTATCTACT . . . . . . . . . . . . . T . .
blockSeqs : . . . A . . . . . G . . . . . . . . . . . . . C C . T . . . . . . . . . . . CAA . . . . . CAATGCATTATCTACT . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . C . . . . . . . . . . . . . . CTA . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : CAA************ CAATGCATTATCCACTG***************************** GA** NN* CT CT** CAG ** N*** AGTA *** C**** CA**
originalCons : CCTGCCAAA-TATTAACATGG-GCCTTTTTGTGANTTTTAATTTTCTAATAAAGCAAA-----TTTCCCCATTGTTGTAACACATATCTTGTCATGGGT-TGACTG-TA-CTTTAT-GATT-ATCA-AGAGTT-CTTTGTAC-ATAAATG-CAAA--A--TATAG-CTTTGAATTAC-AGTACACAGCA----------ATATCCTATCACAATGTTTCTG-TATCTTTTCAGTTACAGTTGTAGTTGCACTAGAATCCAGTAGAAAA-TTTAGA--AAACGCCA----CAGAGTAGAAATAAATTGATTAAAGAGTGTTCAAAGATGGAAAC-AAAGCAAGATA-GACATGATTTAACTT--CAG-TAAGA-GACAGTAGAAATA---GTAA--TGGTG-GTGGTAG-TGGTGA-TGGTAAAAACAGTAGTG-A--TAGTGGGAAAC--AGT-------GAC-GGTGGN-------A--A---C-TGCA-TCCAAAAGAGTGTG-AAGG-TT-CCA-----C--A--A---T-------NCA-----------CTG------CACTAAAGATGAT-CCAAGT--GCAGGGAACCT------G----ATAT---CA------CCAAAAG-ACTTTGCA-TCCTG-GAATACAC-TATTACAAGCTGC-AAAAATAAGAAAA--CATACT-GCAGTCCTACATA-TTGCAGATA-ACACCTCCAGA--AGGATGAAG-TGCCATGCTATCTCT--TACTACCACAGGACAATGCAGAAAAGCATATATTTTCCTTGAAATAAAAC---ACT-G-ACTG----CAATATTGAGCCAAGA-GCAG----ACGCA---A---GAGGAAAATG-T--AGTGGAAGAAAGTAGAAGGCCT---G-C----CAGACCCC--CCTCGGTATCCCCAGGGCATATTCTA-TGAT-ATCAAGTGCAT-TTTTGTGACNAAACAATCCAAATATATCAAAAGGAA-AATACACGAGTGTCCCTTATAA--TGCTCAGTTTTTTGCGGTCAAGGATGCTAA
finalCons : CCTGCCAAA-TATTAACATGG-GCCTTTTTGTGANTTTTAATTTTCTAATAAAGCAAA-----TTTCCCCATTGTTGTAACACATATCTTGTCATGGGT-TGACTG-TA-CTTTAT-GATT-ATCA-AGAGTT-CTTTGTAC-ATAAATG-CAAA--A--TATAG-CTTTGAATTAC-AGTACACAGCA----------ATATCCTATCACAATGTTTCTG-TATCTTTTCAGTTACAGTTGTAGTTGCACTAGAATCCAGTAGAAAA-TTTAGA--AAACGCCA----CAGAGTAGAAATAAATTGATTAAAGAGTGTTCAAAGATGGAAAC-AAAGCAAGATA-GACATGATTTAACTT--CAG-TAAGA-GACAGTAGAAATA---GTAA--TGGTG-GTGGTAG-TGGTGA-TGGTAAAAACAGTAGTG-A--TAGTGGGAAAC--AGT-------GAC-GGTGGCAA------------C-TGCA-TCCAAAAGAGTGTG-AAGG-TT-CCACAATGCATTATCCACTG-----------------------------CACTAAAGATGAT-CCAAGT--GCAGGGAACCT------G----ATAT---CA------CCAAAAG-ACTTTGCA-TCCTG-GAATACAC-TATTACAAGCTGC-AAAAATAAGAAAA--CATACT-GCAGTCCTACATA-TTGCAGATA-ACACCTCCAGA--AGGATGAAG-TGCNN-GCTATCTCT--TACTACCACAGGACAATGCAGAAAAGCATAT--TTTCCTTGAAATAAAAC---ACT-G-ACTG----CAATATTGAGCCAAGA-GCAG----ACGCA---A---GAGGAAAATGN---AGTGGAAGAAAGTAGAAGGCCT---G-CC----AGACCCC--CCTCGGTATCCCCAGGGCATATTCA--TGAT-ATCAAGTGCAT-TTTTGTGACNAAACAATCCAAATATATCAAAAGGAA-AATACACGAGTGTCCCTTATAA--TGCTCAGTTTTTTGCGGTCAAGGATGCTAA
Alignments
lowQualScore : 1 1111 11111 11 11 1111111111 1 1111 11 11 11 2222222 33333333333333333 1111 111111 222222 1 11 1 11 11 1111 222222 111 1 11 111 22222222222 1 1111 3333333 2222 1111 111 11111 333 1 1 1 11
lowQualScore : 1 5 7777 222 11111 22 2 1 0 44 66 4 8 4 1 4 8 11 4 66 22 8 4 7777777777 5 0 5 0 1 0 0 66 4444 0 0 4 3 0 00 555 1 8 1 777 11 4 4 8 8 55 0 11 6666666 4 2 44444444444444444 4 4 4 8 66 777 3333 777 8 55 0 111111 8888 777 333333 8 3 7 7 0 3 5 11 3 4 5 11 44 2 9999 1 6 88 7 555555 222 5 7 88 66 1 8 000 44444444444 3 0 0 1 2222 1 9999999 5 0000 2222 000 5 66666 77 0 4 000 3 3 88 1 3 88 7 7
lowQualScore : . . .... ... ..... .. . . . .. .. . . . . . . .. . .. .. . . .......... . . . . . . . .. .... . . . . . .. ... . . . ... .. . . . . .. . .. ....... . . ................. . . . . .. ... .... ... . .. . ...... .... ... ...... . . . . . . . .. . . . .. .. . .... . . .. . ...... ... . . .. .. . . ... ........... . . . . .... . ....... . .... .... ... . ..... .. . . ... . . .. . . .. . .
lowQualScore : 4 0 1111 999 11111 88 5 1 7 88 55 0 0 0 1 4 9 11 4 11 22 9 0 5555555555 0 1 7 7 3 7 0 99 0000 8 8 0 6 9 00 555 6 0 0 000 00 0 0 0 0 55 8 00 0000000 0 5 88888888888888888 0 0 4 9 11 888 9999 222 0 55 8 555555 5555 000 000000 0 6 3 3 5 6 5 00 8 0 5 33 00 5 0000 0 7 55 3 000000 333 5 3 33 00 4 4 000 66666666666 8 6 8 4 1111 4 9999999 0 3333 0000 000 7 44444 99 7 3 333 3 3 33 0 3 33 3 3
consensus : CCTGCCAAA-TATTAACATGG-GCCTTTTTGTGANTTTTAATTTTCTAATAAAGCAAA-----TTTCCCCATTGTTGTAACACATATCTTGTCATGGGT-TGACTG-TA-CTTTAT-GATT-ATCA-AGAGTT-CTTTGTAC-ATAAATG-CAAA--A--TATAG-CTTTGAATTAC-AGTACACAGCA----------ATATCCTATCACAATGTTTCTG-TATCTTTTCAGTTACAGTTGTAGTTGCACTAGAATCCAGTAGAAAA-TTTAGA--AAACGCCA----CAGAGTAGAAATAAATTGATTAAAGAGTGTTCAAAGATGGAAAC-AAAGCAAGATA-GACATGATTTAACTT--CAG-TAAGA-GACAGTAGAAATA---GTAA--TGGTG-GTGGTAG-TGGTGA-TGGTAAAAACAGTAGTG-A--TAGTGGGAAAC--AGT-------GAC-GGTGG-------CA--A---C-TGCA-TCCAAAAGAGTGTG-AAGG-TT-CCAC--A---ATGCATTATCC----ACTG--CACTAAAGATGAT-CCAAGT--GCAGGGAACCT------G----ATAT---CA------CCAAAAG-ACTTTGCA-TCCTG-GAATACAC-TATTACAAGCTGC-AAAAATAAGAAAA--CATAC-TGCAGTCCTACATA-TTGCAGATA-ACACCTCCAGA--AGGATGAAG-TGCCNGCTATCTCT--TACTACCACAGGACAATGCAGAAAAGC--ATATTTTCCTTGAAATAAAAC---ACT-G-ACTG----CAATATTGAGCCAAGA-GCAG----ACGCA---A---GAGGAAAATG--N-AGTGGAAGAAAGTAGAAGGCCT---G-C----CAGACCCC--CCTCGGTATCCCCAGGGCATATTC--ATGAT-ATCAAGTGCAT-TTTTGTGACNAAACAATCCAAATATATCAAAAGGAA-AATACACGAGTGTCCCTTATAA--TGCTCAGTTTTTTGCGGTCAAGGATGCTAA
Reference ( family-443 ) : CCTGCCAAA-TATTAACATGG-GCCTTTTTGTGANTTTTAATTTTCTAATAAAGCAAA-----TTTCCCCATTGTTGTAACACATATCTTGTCATGGGT-TGACTG-TA-CTTTAT-GATT-ATCA-AGAGTT-CTTTGTAC-ATAAATG-CAAA--A--TATAG-CTTTGAATTAC-AGTACACAGCA----------ATATCCTATCACAATGTTTCTG-TATCTTTTCAGTTACAGTTGTAGTTGCACTAGAATCCAGTAGAAAA-TTTAGA--AAACGCCA----CAGAGTAGAAATAAATTGATTAAAGAGTGTTCAAAGATGGAAAC-AAAGCAAGATA-GACATGATTTAACTT--CAG-TAAGA-GACAGTAGAAATA---GTAA--TGGTG-GTGGTAG-TGGTGA-TGGTAAAAACAGTAGTG-A--TAGTGGGAAAC--AGT-------GAC-GGTGG-------CA--A---C-TGCA-TCCAAAAGAGTGTG-AAGG-TT-CCAC--A---ATGCATTATCC----ACTG--CACTAAAGATGAT-CCAAGT--GCAGGGAACCT------G----ATAT---CA------CCAAAAG-ACTTTGCA-TCCTG-GAATACAC-TATTACAAGCTGC-AAAAATAAGAAAA--CATAC-TGCAGTCCTACATA-TTGCAGATA-ACACCTCCAGA--AGGATGAAG-TGCNNGCTATCTCT--TACTACCACAGGACAATGCAGAAAAGC--ATATTTTCCTTGAAATAAAAC---ACT-G-ACTG----CAATATTGAGCCAAGA-GCAG----ACGCA---A---GAGGAAAATG--N-AGTGGAAGAAAGTAGAAGGCCT---G-C----CAGACCCC--CCTCGGTATCCCCAGGGCATATTC--ATGAT-ATCAAGTGCAT-TTTTGTGACNAAACAATCCAAATATATCAAAAGGAA-AATACACGAGTGTCCCTTATAA--TGCTCAGTTTTTTGCGGTCAAGGATGCTAA
gi|1 : CCTGCCAAA-TATTAACATGG-GCCTTTTTATGATTTTTAATTTTCTAATAATACAAA-----TTTTCCCATTGTTGTAACACATATCTTGTCTTGGTT-TGACTG-TA-CTTTAT-GATT-ATCA-AGAGTT-CTTTGTAC-TTAAATG-CAAA--A--TATAG-CTTTAAATCACAAGTACACAGCA----------ACACCCTATCACAGTGTTTATG-TAT--------------TTGTAGTTGTACTAGAATCCAGTAGAAAA-TTTTGA--AAACGCCA----CCGAGTAGAAATAAATTGATTAAAGAGTGTTAAAAGATGGAAAC-AAAGCAAGATA-GACATGATTTAACTT--CAG-TAAGA-GACAGTAGAAATA---ATAA--TGGTG-GTGGTAC-TGTTGA-TGGTAAAACCAGTAGTG-A--TAGTGGG-AAC--AGT-------TGT-GATGG--------G--A---C-TGCA-TCCAAAACATTGCG-AAGG-------------------TTATCC----TTTG--TACTAAAGATGAT-CCAAGT--GCAGGAAACCT------G----ATTT---CA------CCTAAAG-ACTTTTCA-TCCAG-GAATAAAT-TGTTACAAGCTAC-AAATATAAGAAAA--TATGC-TGCAGTCCTGCATA-TTGCAGAC--ACAACTCC--A--AAGATGAAG-TGCCGTGTATCTCTTATATTACCGCA-GACAATACAG--AAGC--ATATTTACCTTG-AATAAAAC---ACTGG-ACT-----CAATAGTGAGCCAAGA-GCAG----ATGCA---A---GAGG-AAATGC-C-AGTGTAAGAGAGTAGAAGGCCTTTAG-CTATACAGATCCT--TTCCGGTATCCTCAGGGCCTATCT--ATGAT-ATCAAGTGCATATTTTGTGACCAAACAATCAAAATATTTTAAAAGGAAGAATACACGAGTGTCCCTAACAAAGTCCTCAG--TACTGCAATCA--GATGATAA
gi|10 : CAAA-TATTCACATGG-ACTTTTATCT-AGTTTTAATCTTCTAATAAGCCAAA-----ATTCCTCATTGTTGTAACACAT-TCTTGTCATGTGCGTGA-TGTTATTTTTAT-GATTAATGATAGAGGT-CTTTTTAT-ATAGATGCCAAACTA--TATAG-CTTTAAATTAC-AG-ACACAGCT----------AAAT-CTATCACAATG-TTCTGCTGTCTTTGCAGTTACA--------------AAAGTCC-GTAGAAAA-TTTAGAACAAATGCCAAT--AAGAGTAGAAATGAATTGATTAAAGAGcct
gi|11 : AAAGATGTAAAC-AAAGCAA-------TATGATGTAAC------------A-GACA--AGAAATA---ATAA--CGGTG-GC---AG-AGGTGA-TGGTAAAAACAATAGTG-A--TGGTGGGAA-C--AGT-------GAC-GGTGC-------TA--AGTAC-TGCA-TCCAGA-GAGTGTG-AAGG-TTTCCAC--A---ATACATTATCT----ACTG--CACTAATGATGAT-CTATGT--GGAGGGAACCC------G----ATAT---CA------CCAAAAG-ACTTTGCA-TCCTG-GAATACAC-TATTACAAGGTGC-AAAAATAAGAAAA--CATAC-TGCAGTCTTACATA-at
gi|12 : atTTAC-AGTACACAACA----------ATATCCTATC-CA-TGTTTCTT-TATCTTTTCAGTCACAGTTTTAGTTGCATTAGAATCCAGTAGAAAA-TTTAGA--AAATGCCATGCACAGAGTAGAAGTAAATTGATTAAAGAGTGTTCAAAGATGGAAAC-AAAGCAAGACATGAT-TGGTTTAACTT--CAG-TACCA-GACAGTAGAAATA---ATAA--TAGTA-GTGACAG-TGGTAA-TGGTAA
gi|13 : GCCAAA-TATTAACATTG-GACTTTTTGTGATTTTTAATTTCCTAATAAAGCAAA-----TTTCCTCATTGTTGTA---CATATCTTGTCATAGGT-TGACTT-TA-CTTTAT-AATT-ATCA-AGAGTT-CTTTGTAC-ATATATG-CAAA--A--TATAG-CTTTGAATTAC-GGTACACAGCAATATATATATATATCCTACCAAAATGTTTCTG-TATCTTATCAGGTACAGTTGTAGTTGCATTAGAACCCAGTtattagatatactagacaccagtt
gi|14 : caTA-CACATG-TCTAACTT--CAGATAATT-TACACTA---------------TGCTGTGTGGTAGATAGTCG-TGG----AACAGT--TG-ACTTA-----AAAC--AGG-------G---GATGA-------CACAA---C-TGCAATCGAAAAGAGCGTG-AAGG-TTGCCAC--AAAGATGCATGATACGTTTGCTGGCCACTAAAGATGAT-CACAGTAGGCAGGGAACCTTGAATGG----AT-C---CA------CC-AAGG-ATCTTGAATTCCTG-GAATAC
gi|15 : AC-CATAACAAGCTGC-AAAA--AAAAAAC--CATAC-TGCAgacat
gi|15 : AAAAAAAACCATACT-GCACTGAAATCAACATTGAGCCAAGA-GCAGTCAGATGTA---A---GAGGAAA-TG--TCAGTGGAAGAAAGTAGAAGGCCT---T-C----CAGATCCT--CCTCGGTATCCCCTGGGCCTATTT--ATGAT-AGCAAGTGCATATTTTATGACAActgaaatcaacattgagccaagagcagtcagatgtaagaggaaatgtcagtggaagaaagtagaaggccttccagatcctcctcggtatcccctgggcctatttatgatagcaagtgcatattttatgacaaca
gi|16 : accataacaagctgcaaAAA-TAGTAACATGGAGC--TTTTGCGATTTTAAATTTTCTAATAAAACAAAATTAATTTTCCCATTGTTGTAACACATATCTTGTCATGGTT-TTACTG-TA-CTTTAT-GATT-ATCA-AGAGTT-CTTTGTAC-ATAAATG-CAAA--A--CAGAG-CTTTAA------AGTACACAGGA----------AAATCca
gi|17 : tCCTGTCAAAATAT--ACATGGTGC----TTGTGTATTTTAATAATCTAATCAAGCAAA-----TT--CCCATT-TTGTAACACATTTGTT-TCATGGAT--GACT--TA-CTTTATTGATT-ATCA-AGAGTTTCTTTGTACCAAAAATG-CAAA--AATTATAGGCTTTGAATTAC-AGTACACAGCA----------gt
gi|18 : catCCTGTCAAAATAT--ACATGGTGC----TTGTGTATTTTAATAATCTAATCAAGCAAA-----TT--CCCATT-TTGTAACACATTTGTT-TCATGGAT--GACT--TA-CTTTATTGATT-ATCA-AGAGTTTCTTTGTACCAAAAATG-CAAA--AATTATAGGCTTTGAATTAC-AGTACACAGCA----------
gi|19 : catAGA-ATAG----ATGCATTCAT--GAGGAAAATG--T-AGTGGAAGAA-GTAGAAGGCTT---G-C-----AGACGCC--TCTCGGTATACC-AGGGCATATT---ATGAT-ATCAAGTGCAT-TTT--TGACAAAA
gi|2 : ----CAGAG-AAAACTCTATTGATTAAAGATTGTTCAAAGATGGAAAC-AAAGCAAGATA-GACATGATTTAACTTTTCAA-TAAGAAGGCAGTAGAAATA---GTAAAATGGTG-GTGATAG-TGGTAA-TGGTAAAAACAGTAGTGTA--TAGTGGGAAACCAAGTTTTTGGGGAC-GGGGGGGTTTTGCA--A---C-TACA-TCAAAAAAAGTGTG-AGGT-TT-CCAA--A---ATGCATTATTC----ACTG--CACTAAAGAAGATTCCAAGT--GC--GGAAACT------G----CTAT---CAGAGACTTTAGATG-ACTTTGCG-TCCTTCGAATACAC-TATTACAAGCTGC-AAAA-TAAGAAAA--CA-AC-TGCAGTCCTAC-TA-TAGCAGATA--------CA----------AAG-TGCATGCTATCTCT--TACCACCA---GACAATGCAGAAA-GC--ATATTTTCCTTGAA-TACAAC---ACT-G-ACTG----CAATATTGAACGAAGAAGCAG----ACGCA---T---GAGGAAAATT--G-AGTGGAAGAAAG--GAAGGCCT---G-C----CAGCTCCT--CCTCGATATCCCCAGGACATATTCTAATGATTATCAAGTGCAT-TTTTGTGACCAAACAATCCAAATATATCAAAAGGAA-AATACACGAGTGTCCCTTATAA--TGCTCAGTTTTTTGCGGTCAAGGATGCTAAaa
gi|20 : AGA-ATAG----ATGCATTCAT--GAGGAAAATG--T-AGTGGAAGAA-GTAGAAGGCTT---G-C-----AGACGCC--TCTCGGTATACC-AGGGCATATT---ATGAT-ATCAAGTGCAT-TTT--TGACAAAAtttg
gi|21 : ACTAAAGATGAG-CTATGT--GCAAGGAACCT------G----ATAT---CA------CCAAAAG-ACTAAACA-TCCTG-GAATACAC-TATTATAAGGTGC-AAaa
gi|22 : TTGTA-TCCTT-GAATACAC-TATTACAAGCCGCAAAAAATAAATAAT--CATAC-TGTAGTCCAACATA-TTTCAGAT
gi|23 : TTGTTGTAACACATATCTTGTCATGGGT-TGACTG-TA-CTTTGC-GATT-AT
gi|3 : ----CAGAG-AAAACTCTATTGATTAAAGATTGTTCAAAGATGGAAAC-AAAGCAAGATA-GACATGATTTAACTTTTCAA-TAAGAAGGCAGTAGAAATA---GTAAAATGGTG-GTGATAG-TGGTAA-TGGTAAAAACAGTAGTGTA--TAGTGGGAAACCAAGTTTTTGGGGAC-GGGGGGGTTTTGCA--A---C-TACA-TCAAAAAAAGTGTG-AGGT-TT-CCAA--A---ATGCATTATTC----ACTG--CACTAAAGAAGATTCCAAGT--GC--GGAAACT------G----CTAT---CAGAGACTTTAGATG-ACTTTGCG-TCCTTCGAATACAC-TATTACAAGCTGC-AAAA-TAAGAAAA--CA-AC-TGCAGTCCTAC-TA-TAGCAGATA--------CA----------AAG-TGCATGCTATCTCT--TACCACCA---GACAATGCAGAAA-GC--ATATTTTCCTTGAA-TACAAC---ACT-G-ACTG----CAATATTGAACGAAGAAGCAG----ACGCA---T---GAGGAAAATT--G-AGTGGAAGAAAG--GAAGGCCT---G-C----CAGCTCCT--CCTCGATATCCCCAGGACATATTCTAATGATTATCAAGTGCAT-TTTTGTGACCAAACAATCCAAATATATCAAAAGGAA-AATACACGAGTGTCCCTTATAA--TGCTCAGTTTTTTGCGGTCAAGGATGCTAA
gi|4 : -----TTTTCCTATTCTTGCAACACATATCTTGTCATGGTT-TGACTG-TA-CTTTAT-GATG-AAAA-AGAGAT-ATTTGCAC-ATAAATG-CGAA--A--TATAG-CTTTAAATCAC-AGTACACAGCG----------ATATCCTATCACAATGTTTCTG-TATATTTTCAGGTACAGTTATAATTGCACTTGAATCAAGTAGAACA-TTTAGA--AAACGCTA----CAGAGTAGAAATAGATTGATTAAAGAGTGTTCAGATATGGAAAC-AAATCAAGATA-TACATGG-TTAACTT--CAG-TAAAA-GACAGGTGAAATAATGGTAG--TGGTG-GTGGTAG-TGGTGA-TGGTAAAAGCAGTAGTG-A--TAA-AGGAAAC--AGT-------GAC-GGT-G-------CA--A---C-TGCA-TCAAAAAGAGTGTG-ATGGTTT-CCAC--A---ATGCATTACCC----ACTG--CAC-AAAGACGAT-CCAAGT--GCAGGGAACCT------G----ATAT---CA------TCAAAAG-ACTTTGCA-TCCTG-GAATACAC-CATAACAAGCTGC-AAAA--AAAAAAC--CATAC-TGCAtttg
gi|5 : TTGTAGTTGCACTAGAATCCAGTAGAAAATTTTAGG--AAACGCCA----CAGAGTAGAAATAAAATGATGAAAG-GTGTTCAAAGATGGAAAC-AAAACAAAATA-ACCATGATTTAACTT--C-C-TAAGA-GACAGAAGAAATA---GTAA--TGGTG-GTGGTAG-TGGTGATTGATAAAAACAATAGTT-A--TAGTGGGAAAC--AGT-------GAC-GGTGA--------A--A---CTTACA-TCCAAAAGAGTGTG-AAGG-CT-CCAC--A---ATGCATTATCT----ACT---CACTAAAGATGAT-CCAAGT--GCAGGGAACCT------G----ATAT---CA------CCAAAAACACTTTGCA-TCCCG-GAATACACTTTTTACAG--TGC-AAAAATAAGAAAAACCACAC-TGCAGTCCTAC-TAGGTGCAGATA-ACACCTCCAGA--AGGATGAAG-TGCCAGC-ATCT------CTACCACAGGACAATGCAG-AAAGCATATATTTTCCGGGAAATAAAAC---
gi|6 : tcTTGTAGTTGCACTAGAATCCAGTAGAAAATTTTAGG--AAACGCCA----CAGAGTAGAAATAAAATGATGAAAG-GTGTTCAAAGATGGAAAC-AAAACAAAATA-ACCATGATTTAACTT--C-C-TAAGA-GACAGAAGAAATA---GTAA--TGGTG-GTGGTAG-TGGTGATTGATAAAAACAATAGTT-A--TAGTGGGAAAC--AGT-------GAC-GGTGA--------A--A---CTTACA-TCCAAAAGAGTGTG-AAGG-CT-CCAC--A---ATGCATTATCT----ACT---CACTAAAGATGAT-CCAAGT--GCAGGGAACCT------G----ATAT---CA------CCAAAAACACTTTGCA-TCCCG-GAATACACTTTTTACAG--TGC-AAAAATAAGAAAAACCACAC-TGCAGTCCTAC-TAGGTGCAGATA-ACACCTCCAGA--AGGATGAAG-TGCCAGC-ATCT------CTACCACAGGACAATGCAG-AAAGCATATATTTTCCGGGAAATAAAAC---
gi|7 : tcTGCCAAA-TATTAACACGG-GGCTTTTTGCAAGTTTTAATTTTCTAATAAAGCAAA-----ATTCCTCATTGCTGTAGCACATATATTGTCATGGGT-TGACTG-TA-CTTTAT-GATT-ATGA-AAAGTT-CTTTGTAC-TTGA-TG-CTAA--C--TATAG-CTTTAAATTAC-AGTACAAAGCA----------ATATCCTATCACAATGTTTCTG-TGTCTTTTCAGTTACAGTTGTAGTTGCTCTAGAATCTAGTGGAAAA-TTTAGA--AAATACCA----CAGAGTAGAAATGAATTGATTGAAGAGTGTTCAAAGATGGAAAC-AAAGCAAGATA-GGAATGGTTTAACTT--CAG-TAACA-GACAGTAGAAATA---ATAA--CGGTG-GTGGCAG-TGGAGA-TGGTAAAACCAGTAGTG-A--TAGTGGG-AAC--AGT-------GAC-GGT-G-------CA--A---T-TGCA-TCCAAAAGAGTGCG-
gi|8 : G-A--TGGTGG-AAAC----T-------GACAGGTTG-------CT--A---CATGCA-TCCAAATGAGGGTGTAAGG-TT-CCACTCA---ATGCAT-ATCCC---ACTG--CACTAAA-ATGA--CCAAGT--GCAGGGAAACC------GGTGGATATTTTCA------TCAAAAG-ACCT-GCA-TCCTG-CA-TACAT-TATTACAAACAGC-AAAA-TAAGAAAA---ATACTTGCAGCCTTACATA-GTGCAGGGATACACCTCCAGATTAGGATGAAGATGC-TGTTGTCTCT-----TACCACAGGACAATGCAGAAAA-C--A---------------AAAAC---ACC-----------CAA----GAGCC-AGA-GCAG----ATGAA---AAATGAGG-AAATGTCA-ATTGGAAGAAA-T-GA-----T---GCC----CAGACCCCTTCCTCGGTATACCCAGGgt
gi|9 : AATATGG-GGCTTTTTGTTCGTTTTAATTTTCTAATAAAGCAAA-----ATTCCTCATTGTTGTAACACATATCTTGTCATGGGT-TGACTG-TA-TTTTAT-AATT-ATGA-AGAGTT-CTTTGTAC--TAGATG-CCAA--A--TATAG-CTCTGAATTAC-AGTACACAGCA----------ATATCCTATC-C-ACGTTTCTG-TATCTTTTCAGTTACAGTTGTAGTTGCACT--------------AA-TT-----------CC--------AGTAGAAATAAATTGATTAAAGAGTGTCCATTGATGGAAACAAAAGTAAGATG-GACATGGTCTAACTT--CAG-cc