lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 0000000000000000000000000000000000000000000000000000000000000000000000000 11 1 1111111111 1 1 111111 7777777777777777777777777 2222222 111111111
lowQualScore : 4 2222222222222222222222222222222222222222222222222222222222222222222222222 44 1 3 6666666666 33 66 9999999 2 6 77 0 2 33 33 666666 5 777 444 33 2 3 1111111111111111111111111 3333333 2 2 444444444 2 6 77 44 0 6 3
lowQualScore : . ......................................................................... .. . . .......... .. .. ....... . . .. . . .. .. ...... . ... ... .. . . ......................... ....... . . ......... . . .. .. . . .
lowQualScore : 0 1111111111111111111111111111111111111111111111111111111111111111111111111 22 9 1 8888888888 99 88 3333333 9 2 99 5 9 99 99 222222 7 333 777 77 7 3 0000000000000000000000000 1111111 5 0 888888888 7 4 44 11 4 2 3
consensus : GCCTGGTTTTCGAAAGTATCCT-AAG--------ATTGA-TCCT---------------------A-AG----------------A---------GACTATCTTAG-GACAA-TC-----GTAAATTGTAAA--TCAAAGA--TG------TCTT-AAGATTGTCCTA--ACAANG-TTGGAC--T--TAA----GATGGTC-TTAGG---A---TT--G-TCGTAAGATTAT--------C-A---A---C------TTTTTT-A-----ACATCATTT-TACGGATGAAAAA-------GTA-TCATA-GCAT-TAATT-TTCA
Reference ( gi|5 ) : GCCTGGTTTTCGAAAGTATCCT-AAG--------TTCGA-TCC----------------------A-AG----------------A---------GAC-ATCTTAC-GACGA-TC-----GCAAGTTGTAAA--TCAAAGA--TG------TCTT-AAGATTGACCTA--ACAACG-TTGGAC--T--TAG----GATGGTC-TTAGG---A---TT--G-TCGTAAGATTAT--------C-A---AC--C------TTTTTT-A-----ACATCATTT-TACGGGTGAAAGA-------GTA-TCATA-ACAT-TAAAT-TTCA
gi|7 : GCCTGGTTTTCGAAAGAATCCTTAAG--------TT-GA-TCCTACAATATTATTAGGACGACTTATAG----------------G---------GACTATCTTAG-GAC-A-TC-----GCAAATTGTAAA--TCAA-GA--TG------TCTT-AGGATTGGCCAA--ACG-TG-TTGGAC--T--TAG----GATGGTC-TTAGG---A----T--G-ACGTAAAA-TAT--------TAA---ACCAC------TTTTTT-T-----ACATCATTT-TACGGG
gi|1 : gGCCAGGTTTTCGATAGTATCCT-ACG--------ATTAA-TCCT---------------------C-AG----------------A---------TAT-ATGTTAG-GAC----C--------AGTCTTACA--TGTAGGAC-TG------TCTT-AGGACTATCTTAGGAAAATT-TTGAA---TGATAGATCAAATATTC-TTAAG---A---TT--G-TCCTAAaaa
gi|2 : gCCTGGTTTTCAAAGGTATTCT-AAG--------GCTGA-TCCT---------------------A-AG----------------ATAGAG----GACTATCTTAG-GACAA-TC-----GTAAATTGTAAA--TCAAAGA--TG------TGTT-CAGATTGTCCTA--ACAAAG-TTGGAC--T--TA------ATATTC-TGAGG---A---AT--G-CCCGAAGTTTTTTTTTCCGGT-G---AT--T------TTTTTT-------ATATCATTT-TACGGATGAAAAA-------GTA-TGATA-GCAA-TACTT-TTCAcaaagtgggacttggatggtcttagggttgtcgtatgattatcacacacgttttgttacatcattatacgaatggagaaaaataaaggcattaatttgcaaagaaaaagtgaaaatt
gi|4 : ggcCCTGCTTCT-GAAAGTATCCT-AAG--------ATTGA-TCT----------------------T-A-----------------A---------GACTATCTTAG-GACAA-TC-----GTATATTGTTAG--TCAAAAA--TG------TCTT-AGGATTGTCCTA--ACAAAA-ATGGAC--T--TA-----TATG-----TAAG---ATGGTT--G-TCGTATGATTTT------------------T------TTTTTT-T-----ACATCATTT-TACGGATTAAA-A-------GTA-TTATAGAAAT---AAT-TTatcaaaagagtgaaaatta
gi|6 : CCGGGGTTTCGAACATATCTT-AGA--------T---A-TTT----------------------T-AG----------------G---------GCT-ATCCTAG-TACAA-TC-----GTGAATAATAAA--TCAAAGA--TG------TCTTTAAGATTGTCCTA--ACAATG-TTGGAC--T--TAA----GATGGT--TTAAATATA---TT--G-TCGTACGA--AT-------------------------TTT----------ACATCCTTT-TACGGATGAATAA-------GTA-T-AT--ACATGTAAacaatcacaagattgaatatcat
gi|10 : aCCTGGTTTTCGAAAGAATCCT-AAGAGATACCTTTGGA---C----------------------A-AGTCTTTGTGCAGTATTAG---------GACTATCTTAG-GACAA-TC-----GTTAATTGTAAA--TCAAAGC--TA------TCTT-AAGATTGTCTTA--ACAAAG-TTGGAC--T--TGA----GATcaatcaagtgaaaattat
gi|12 : CCTGGTTTTCGATAGTATCCT-ACG--------ATTAA-TCCT---------------------A-AG----------------ATATATGTAGGACTGTCTTAG-GACTA-TCTTAGGACAA-TTTTAAA--TGATAGA--TAAAATATTCTT-AAGATTGTCCGA--ACAAAG-TGGGAC--T--
gi|3 : TTTTCGAAAGAATCCC-AAG--------ATTGA-TCCT---------------------A-AG----------------A---------TAT-ATCTTAC-TACAA-
gi|19 : cTTTCGAAAGTATCC--AAG--------ACTGATTCT----------------------A-AG----------------A---------TAT-ATCTTAG-GACAAGTC-----GTAGGgccttacaaatgtaggacagtcttaaaaatatcttagaacaatcgtaaattgtgaatcaaagattccataagatagtcctaacaaagttggactccagacggtcttaaggttgttctaagcttttttaaatatctttttacggatgaaaaaatatagcattaattttca
gi|16 : TTTGGAAAGTATCCT-AAG--------ATCGA-TCCT---------------------A-AG----------------A---------TAT-GTC-TACAGACAA-acagtct
gi|3 : -AA----------------A---------AAT-ATCTTAG-AACAA-TC-----GTAAATTGTGAA--TCAAAGA--TT------CCAT-AAGATAGTCCTA--ACAAAG-TTGGAC--T--CCA----GACGGTC-TTAAG---G---TT--G-TTCTAAG-----------------------C------TTTTTTAA-----ATATCTTTT-TACGGATGAAAAA-------AT----ATA-GCAT-TAATT-TTCAgtgttgggacagggtttcgttgactatctgttagacaatcgttaaattgtaatcaa
gi|1 : cttttcgaaagaatcccaagattgatcctaagatatatcttactacaagccttacaaatgtaggacagtctt---------GACTATCTTAG-GAAAA-TT-----TTGAATGATAGA--TCAAATA--T-------TCTT-AAGATTGTCCTA--ACAAAG-TGGGAC--T--T-G----GATGGTC-TTAGG---G---TT--G-TCGTATGATTAT--------C-ACACAC--G------TTTTGT-T-----ACATCATTA-TACGAATGGAGAA-------AAA-TAAAG-GCAT-TAATT-TGCA
gi|9 : ggccaggttttcgatagtatcctacgattaatcctcagatatatgttaggaccagtcttacatgtaggactgtcttag---------GACTATCTTAG-GACAA-TC-----G-------TAAA--TCAAAGA--TG------TCTG-AAGATTGTCCTA--ACAAT--TTGGAC--T--T--------TTGTC-TT----------TT--A-----AAGATTAT-------------------------TT-----------ACATCCTAT-TACGGATGAAAAAGTACACTGTA-TTATA-GAAA-TAATT-TTCAaagaaaaagtgaaaatt
gi|8 : cgggattacgggacatgcacttgattgtagAGTTGTAAAATCCAAAGGACTG------TCC--AGGATTGTCCTTTTGCGAAG-CTG-ACGTT--TGG----GATGTTC-TTAGGT--A---TT--G-TCGC-AGATTAT--------------AT--CACATAATTTTGT-ATC---ACACCATTTAAATGGGTGAAA-A-------GGA-TGATACGCAT-T-TAT-TTCaacaaaaaagagaaaatt
gi|15 : gccgggttttcgaaaagcggatcatatgatctgaataaggt--TCAAAGA--TA------TCTT-AAAATTGTCTTA--GCAATG-TTGGAC--T--CAA----GATGGTC-TTAGA---A---TT--G-TCTTAAGATTGT--------C-----AC--T------CTTTTT-A-----AAATCATTT-CACGTATGGAAAA-------GTA-TCAAA-GCAA-T-AAT-TT
gi|14 : --TCAAAGA--TA------TCTT-AAAATTGTCTTA--GCAATG-TTGGAC--T--CAA----GATGGTCTTTAGA---A---TT--G-TCTTAAGATTGT--------C-A-------C------TCTTTT-A-----AAATCATTT-CACGTATGAAA-A-------GTATTCAAA-GCAA-TAATT-TTTA
gi|11 : --TCAAAGA--TA------TCTT-AAAATTGTCTTA--GCAATGTTTGGAC--T--CAA----GATGGTCTTTAGA---A---TT--GTTCTTAAGATTGT--------C-A-------C------TCTTTT-A-----AAATCATTT-CACGTATAAAAG--------TTA-TCAAA-GCAA-TAATT-TTTA
gi|13 : ATAGTC-TTACG---A---TT--T-TCGTAAGATTAT--------C-AC--AG--T------TTTTTT-CGTT--ACATCATTT-TACGGATGAAAAA-------GTA-TTATG-GCAT-TAATT-TTCAg
gi|18 : aagtggaaatgcatggagacGGTC-TTGGG---A---TT--G-TCGTAAGATTAT--------C-----AC--TTA----TTTCTT-ATATTTACATTATTT-TACGGATGAAA-A-------GTA-Taataataaagtgaaaatc
gi|17 : AGG---A---TTTTG-TCTTAAGATCAC--------A-A---AG----------TTTTT-A-----ACATCATTT-TTATGGTGAAAGA-------GTA-TTATA-A-AT-TAAATATTCAttt
gi|21 : aaaaacgttctgtcctatgatac-----ACATCATTT-TACGGATGAAAAA-------GTA-TTATA-GCAagcc
gi|20 : CATTT-TACGGG-AAAAGA-------GTA-TCATA-ACAT-TAAAT-TTCA
Alignments
lowQualScore : 6666666666666666666666666666666666666666666666666666666666666666 33333333333333333333 111111
lowQualScore : 555 2 2 777777 9999999999999999999999999999999999999999999999999999999999999999 33 2 2 2 888888888888888 33 2 4 2 77 8888888 1 2 66666 33 777777 2 5 666 55 2 0 66 0 99999999999999999999 2 777777 2 2 1 2 2 8888888 2 2 5 2 55 2
lowQualScore : ... . . ...... ................................................................ .. . . . ............... .. . . . .. ....... . . ..... .. ...... . . ... .. . . .. . .................... . ...... . . . . . ....... . . . . .. .
lowQualScore : 888 5 5 222222 1111111111111111111111111111111111111111111111111111111111111111 22 4 4 7 222222222222222 44 7 3 7 33 7777777 0 7 77777 77 777777 7 3 999 99 5 9 99 1 22222222222222222222 7 111111 4 4 4 8 5 1111111 5 5 3 7 00 9
consensus : GCCTGGTTTTCGAAA---GTATCCTAAGATTGAT-CCT------A----------------------AG----------------A--------------------GACTATCT--TAGGA-CAA-TCGT-AAA-----TTG---TA--AATC--AAAGA-TGTCTT-AAGATTGTCCTA--ACA-------ANG-T-----TGGAC--T------TAAGATG-GTC-TTAGG---ATT--G-TCGTAAGAT--TAT--------CA----A-C---TTTTT-T-A----ACATCA-TTT-TACGGATGAAAA-A-------G-TA-TCATA-GCAN-T-AATTTTCA
Reference ( family-4324 ) : GCCTGGTTTTCGAAA---GTATCCTAAGATTGAT-CCT------A----------------------AG----------------A--------------------GACTATCT--TAGGA-CAA-TCGT-AAA-----TTG---TA--AATC--AAAGA-TGTCTT-AAGATTGTCCTA--ACA-------ANG-T-----TGGAC--T------TAAGATG-GTC-TTAGG---ATT--G-TCGTAAGAT--TAT--------CA----A-C---TTTTT-T-A----ACATCA-TTT-TACGGATGAAAA-A-------G-TA-TCATA-GCAT-T-AATTTTCA
gi|1 : GCCAGGTTTTCGATA---GTATCCTACGATTAAT-CCT------C----------------------AG----------------A--------------------TA-TATGT--TAGGACCAG-TCTT-A
gi|1 : gACCCTAAGACC-AT-CC-------A----------------------AGTC--------------C--------------------CACTTTGT--TAGGA-CAA-TCTT-AAGAATATTTGATCTATCATTC--AAAAT-TTTCCT-AAGATAGTCCTAAGACAGTCCTACATG-TAAGACTGGTC--C------TAACATATATC-TGAGG---ATTA-A-TCGTAGGATACTAT--------CG----A-catgtaggactgtcttaggactatcttaggaaaattttgaatgatagatcaaatattcttaagattgtcctaacaaagtgggacttggatggtcttagggttgtcgtatgattatcacacacgttttgttacatcattatacgaatggagaaaaataaaggcattaatttgcaaagaaaaagtgaaaatt
gi|1 : ggccaggtttTAGGACTG-T-CTT------A----------------------GG----------------A----------------------CTATCT--TAGGA-AAA-TTTT-GAA-----TGA---TA--GATC--AAATA-T-TCTT-AAGATTGTCCTA--ACA-------AAG-T-----GGGAC--T------TG-GATG-GTC-TTAGG---GTT--G-TCGTATGAT--TAT--------CAC---A-CACGTTTTG-T-T----ACATCA-TTA-TACGAATGGAGA-A-------A-AA-TAAAG-GCAT-T-AATTTGCAtgtcgtatgattatcacacacgttttgttacatcattatacgaatggagaaaaataaaggcattaatttgcaaagaaaaagtgaaaatt
gi|10 : ggccaggttttcgatagtatcctacgattaatcctcagatatatgttaggaccagtcttacatgCCTGGTTTTCGAAA---GAATCCTAAGA--GATACCTTTGGACA----------------------AGTCTTTGTGCAGTATTAG--------------------GACTATCT--TAGGA-CAA-TCGT-TAA-----TTG---TA--AATC--AAAGC-TATCTT-AAGATTGTCTTA--ACA-------AAG-T-----TGGAC--T------TGAGATaagaaaaagtgaaaatt
gi|11 : TC--AAAGA-TATCTT-AAAATTGTCTTA--GCA-------ATGTT-----TGGAC--T------CAAGATG-GTCTTTAGA---ATT--GTTCTTAAGAT--TGT--------C-----A-C---TCTTT-T-A----AAATCA-TTT-CACGTAT--AAA-A-------GTTA-TCAAA-GCAA-T-AATTTTTA
gi|12 : CCTGGTTTTCGATA---GTATCCTACGATTAAT-CCT------A----------------------AG----------------ATATATGTAGGACTGTCTTAGGACTATCT--TAGGA-CAA-TTTT-AAA-----TGA---TA--GATA--AAATA-T-TCTT-AAGATTGTCCGA--ACA-------AAG-T-----GGGAC--T------g
gi|13 : ATA-GTC-TTACG---ATT--T-TCGTAAGAT--TAT--------CAC---A-G---TTTTT-T-TCGTTACATCA-TTT-TACGGATGAAAA-A-------G-TA-TTATG-GCAT-T-AATTTTCA
gi|14 : aagtggaaatgcatggagacTC--AAAGA-TATCTT-AAAATTGTCTTA--GCA-------ATG-T-----TGGAC--T------CAAGATG-GTCTTTAGA---ATT--G-TCTTAAGAT--TGT--------C-----A-C---TCTTT-T-A----AAATCA-TTT-CACGTATG-AAA-A-------G-TATTCAAA-GCAA-T-AATTTTTAaataataaagtgaaaatc
gi|15 : TC--AAAGA-TATCTT-AAAATTGTCTTA--GCA-------ATG-T-----TGGAC--T------CAAGATG-GTC-TTAGA---ATT--G-TCTTAAGAT--TGT--------CA----C-T---CTTTT-T-A----AAATCA-TTT-CACGTATGGAAA-A-------G-TA-TCAAA-GCAA-T-AATTT
gi|16 : TTTGGAAA---GTATCCTAAGATCGAT-CCT------A----------------------AG----------------A--------------------TA-TGTCT--ACAGA-CAA-
gi|16 : --------------------GACTATCTGTTAG-A-CAA-TCGTTAAA-----TTG---T---AATC--AAgtgttgggacagggtttcgttgactatctgttagacaatcgttaaattgtaatcaa
gi|17 : tttggaaagtatcctaagatcgatcctaagatatgtctacagacaagtgttgggacagggtttcgttAGG---ATTTTG-TCTTAAGAT--CA---------CA----A-A---GTTTT-T-A----ACATCATTTT-TATGG-TGAAAG-A-------G-TA-TTATA-A-AT-TAAATATTCA
gi|18 : aaaaacgttctgtcctatgatacG-GTC-TTGGG---ATT--G-TCGTAAGAT--TAT--------CACTT-A-T---TTCTTAT-ATTT-ACATTA-TTT-TACGGATG-AAA-A-------G-TA-Tagcc
gi|19 : TTTCGAAA---GTATCC-AAGACTGAT-TCT------A----------------------AG----------------A--------------------TA-TATCT--TAGGA-CAAGTCGT-Attt
gi|2 : CCTGGTTTTCAAAG---GTATTCTAAGGCTGAT-CCT------A----------------------AG----------------ATAGAG---------------GACTATCT--TAGGA-CAA-TCGT-AAA-----TTG---TA--AATC--AAAGA-TGTGTT-CAGATTGTCCTA--ACA-------AAG-T-----TGGAC--T------TAATAT---TC-TGAGG---AAT--G-CCCGAAGTT--TTTTTTTCCGGTG----A-T---TTTTT-T-T----ATATCA-TTT-TACGGATGAAAA-A-------G-TA-TGATA-GCAA-T-ACTTTTCAggacagtct
gi|20 : ggcCA-TTT-TACGG--GAAAAGA-------G-TA-TCATA-ACAT-T-AAATTTCAatcaaaagagtgaaaatta
gi|21 : ----ACATCA-TTT-TACGGATGAAAA-A-------G-TA-TTATA-GCAa
gi|3 : TTTTCGAAA---GAATCCCAAGATTGAT-CCT------A----------------------AG----------------A--------------------TA-TATCT--TACTA-CAA-
gi|3 : cT-CTT------A----------------------AA----------------A--------------------A--TATCT--TAGAA-CAA-TCGT-AAA-----TTG---TG--AATC--AAAGA-TTCCAT-AAGATAGTCCTA--ACA-------AAG-T-----TGGAC--T------CCAGACG-GTC-TTAAG---GTT--G-TTCTAAG-----------------------C---TTTTT-TAA----ATATCT-TTT-TACGGATGAAAA-A-------A-T----ATA-GCAT-T-AATTTTCAgccttacaaatgtaggacagtcttaaaaatatcttagaacaatcgtaaattgtgaatcaaagattccataagatagtcctaacaaagttggactccagacggtcttaaggttgttctaagcttttttaaatatctttttacggatgaaaaaatatagcattaattttca
gi|4 : cttttcgaaagaatcccaagattgatcctaagatatatcttactacaagccttacaaatgtaggacagCCTGCTTCT-GAAA---GTATCCTAAGATTGAT-CTT------A----------------------AG----------------A----------------------CTATCT--TAGGA-CAA-TCGT-ATA-----TTG---TT--AGTC--AAAAA-TGTCTT-AGGATTGTCCTA--ACA-------AAA-A-----TGGAC--TTATATGTAAGATG-G------------TT--G-TCGTATGAT--TTT----------------T---TTTTT-T-T----ACATCA-TTT-TACGGATT-AAA-A-------G-TA-TTATA-GAAA-T-AATTTACA
gi|5 : GCCTGGTTTTCGAAA---GTATCCTAAGTTCGAT-CC-------A----------------------AG----------------A--------------------GAC-ATCT--TACGA-CGA-TCGC-AAG-----TTG---TA--AATC--AAAGA-TGTCTT-AAGATTGACCTA--ACA-------ACG-T-----TGGAC--T------TAGGATG-GTC-TTAGG---ATT--G-TCGTAAGAT--TAT--------CA----ACC---TTTTT-T-A----ACATCA-TTT-TACGGGTGAAAG-A-------G-TA-TCATA-ACAT-T-AAATTTCAatcacaagattgaatatcat
gi|6 : CCGGGGTTTCGAAC---ATATCTTA-GAT--AT-TTT------A----------------------GG----------------G----------------------CTATCC--TAGTA-CAA-TCGT-GAA-----TAA---TA--AATC--AAAGA-TGTCTTTAAGATTGTCCTA--ACA-------ATG-T-----TGGAC--T------TAAGATG-GT--TTAAATATATT--G-TCGTACG----------------A----A-T---TTT----------ACATCC-TTT-TACGGATGAATA-A-------G-TA-T-ATA--CATGT-AA
gi|7 : aGCCTGGTTTTCGAAA---GAATCCTTAAGTTGAT-CCT------ACAATATTATTAGGACGACTTATAG----------------G--------------------GACTATCT--TAGGA-CA--TCGC-AAA-----TTG---TA--AATC--AA-GA-TGTCTT-AGGATTGGCCAA--ACG--------TG-T-----TGGAC--T------TAGGATG-GTC-TTAGG---A-T--G-ACGTAAAA---TAT--------TAAACCA-C---TTTTT-T-T----ACATCA-TTT-TACGG--GAAAcaatcaagtgaaaattat
gi|8 : gGCCGGGTTTTCGAAAAGCGGATCATA----TGAT-CTG------A----------------------A------------------------------------------------TAAGG-TAG-TTGT-AAA----------------ATCCAAAGGACTGTCC--AGGATTGTCCTTTTGCG-------AAG-C-----TG-ACGTT------TGGGATG-TTC-TTAGGT--ATT--G-TCGC-AGATTATAT--------CACAT-A-A---TTTTG-T-ATC--ACACCA-TTTAAATGGGTGAAAA-G-------G--A-TGATACGCAT-T-TATTT
gi|9 : TTGAT-TGT------A----------------------GG----------------A----------------------CTATCT--TAGGA-CAA-TCGT-AAA-----T------------C--AAAGA-TGTCTG-AAGATTGTCCTA--ACA-------AT--T-----TGGAC--T------T----TT-GTC-TT-------TT--A-----AAGAT--TAT------------------------T-T-A-----CATCC-TAT-TACGGATGAAAA-AGTACACTG-TA-TTATA-GAAA-T-AATTTTCAc
Alignments
lowQualScore : 6666666666666666666666666666666666666666666666666666666666666666 33333333333333333333 111111
lowQualScore : 555 2 2 777777 9999999999999999999999999999999999999999999999999999999999999999 33 2 2 2 888888888888888 33 2 4 2 77 8888888 1 2 66666 33 777777 2 5 666 55 2 0 66 0 99999999999999999999 2 777777 2 2 1 2 2 8888888 2 2 5 2 1 3
lowQualScore : ... . . ...... ................................................................ .. . . . ............... .. . . . .. ....... . . ..... .. ...... . . ... .. . . .. . .................... . ...... . . . . . ....... . . . . . .
lowQualScore : 888 5 5 222222 1111111111111111111111111111111111111111111111111111111111111111 22 4 4 7 222222222222222 44 7 3 7 33 7777777 0 7 77777 77 777777 7 3 999 99 5 9 99 1 22222222222222222222 7 111111 4 4 4 8 5 1111111 5 5 3 7 0 1
consensus : GCCTGGTTTTCGAAA---GTATCCTAAGATTGAT-CCT------A----------------------AG----------------A--------------------GACTATCT--TAGGA-CAA-TCGT-AAA-----TTG---TA--AATC--AAAGA-TGTCTT-AAGATTGTCCTA--ACA-------ANG-T-----TGGAC--T------TAAGATG-GTC-TTAGG---ATT--G-TCGTAAGAT--TAT--------CA----A-C---TTTTT-T-A----ACATCA-TTT-TACGGATGAAAA-A-------G-TA-TCATA-GCANT-AATTTTCA
Reference ( family-4324 ) : GCCTGGTTTTCGAAA---GTATCCTAAGATTGAT-CCT------A----------------------AG----------------A--------------------GACTATCT--TAGGA-CAA-TCGT-AAA-----TTG---TA--AATC--AAAGA-TGTCTT-AAGATTGTCCTA--ACA-------ANG-T-----TGGAC--T------TAAGATG-GTC-TTAGG---ATT--G-TCGTAAGAT--TAT--------CA----A-C---TTTTT-T-A----ACATCA-TTT-TACGGATGAAAA-A-------G-TA-TCATA-GCANT-AATTTTCA
gi|1 : GCCAGGTTTTCGATA---GTATCCTACGATTAAT-CCT------C----------------------AG----------------A--------------------TA-TATGT--TAGGACCAG-TCTT-A
gi|1 : gACCCTAAGACC-AT-CC-------A----------------------AGTC--------------C--------------------CACTTTGT--TAGGA-CAA-TCTT-AAGAATATTTGATCTATCATTC--AAAAT-TTTCCT-AAGATAGTCCTAAGACAGTCCTACATG-TAAGACTGGTC--C------TAACATATATC-TGAGG---ATTA-A-TCGTAGGATACTAT--------CG----A-catgtaggactgtcttaggactatcttaggaaaattttgaatgatagatcaaatattcttaagattgtcctaacaaagtgggacttggatggtcttagggttgtcgtatgattatcacacacgttttgttacatcattatacgaatggagaaaaataaaggcattaatttgcaaagaaaaagtgaaaatt
gi|1 : ggccaggtttTAGGACTG-T-CTT------A----------------------GG----------------A----------------------CTATCT--TAGGA-AAA-TTTT-GAA-----TGA---TA--GATC--AAATA-T-TCTT-AAGATTGTCCTA--ACA-------AAG-T-----GGGAC--T------TG-GATG-GTC-TTAGG---GTT--G-TCGTATGAT--TAT--------CAC---A-CACGTTTTG-T-T----ACATCA-TTA-TACGAATGGAGA-A-------A-AA-TAAAG-GCATT-AATTTGCAtgtcgtatgattatcacacacgttttgttacatcattatacgaatggagaaaaataaaggcattaatttgcaaagaaaaagtgaaaatt
gi|10 : ggccaggttttcgatagtatcctacgattaatcctcagatatatgttaggaccagtcttacatgCCTGGTTTTCGAAA---GAATCCTAAGA--GATACCTTTGGACA----------------------AGTCTTTGTGCAGTATTAG--------------------GACTATCT--TAGGA-CAA-TCGT-TAA-----TTG---TA--AATC--AAAGC-TATCTT-AAGATTGTCTTA--ACA-------AAG-T-----TGGAC--T------TGAGATaagaaaaagtgaaaatt
gi|11 : TC--AAAGA-TATCTT-AAAATTGTCTTA--GCA-------ATGTT-----TGGAC--T------CAAGATG-GTCTTTAGA---ATT--GTTCTTAAGAT--TGT--------C-----A-C---TCTTT-T-A----AAATCA-TTT-CACGTAT--AAA-A-------GTTA-TCAAA-GCAAT-AATTTTTA
gi|12 : CCTGGTTTTCGATA---GTATCCTACGATTAAT-CCT------A----------------------AG----------------ATATATGTAGGACTGTCTTAGGACTATCT--TAGGA-CAA-TTTT-AAA-----TGA---TA--GATA--AAATA-T-TCTT-AAGATTGTCCGA--ACA-------AAG-T-----GGGAC--T------g
gi|13 : ATA-GTC-TTACG---ATT--T-TCGTAAGAT--TAT--------CAC---A-G---TTTTT-T-TCGTTACATCA-TTT-TACGGATGAAAA-A-------G-TA-TTATG-GCATT-AATTTTCA
gi|14 : aagtggaaatgcatggagacTC--AAAGA-TATCTT-AAAATTGTCTTA--GCA-------ATG-T-----TGGAC--T------CAAGATG-GTCTTTAGA---ATT--G-TCTTAAGAT--TGT--------C-----A-C---TCTTT-T-A----AAATCA-TTT-CACGTATG-AAA-A-------G-TATTCAAA-GCAAT-AATTTTTAaataataaagtgaaaatc
gi|15 : TC--AAAGA-TATCTT-AAAATTGTCTTA--GCA-------ATG-T-----TGGAC--T------CAAGATG-GTC-TTAGA---ATT--G-TCTTAAGAT--TGT--------CA----C-T---CTTTT-T-A----AAATCA-TTT-CACGTATGGAAA-A-------G-TA-TCAAA-GCAAT-AATTT
gi|16 : TTTGGAAA---GTATCCTAAGATCGAT-CCT------A----------------------AG----------------A--------------------TA-TGTCT--ACAGA-CAA-
gi|16 : --------------------GACTATCTGTTAG-A-CAA-TCGTTAAA-----TTG---T---AATC--AAgtgttgggacagggtttcgttgactatctgttagacaatcgttaaattgtaatcaa
gi|17 : tttggaaagtatcctaagatcgatcctaagatatgtctacagacaagtgttgggacagggtttcgttAGG---ATTTTG-TCTTAAGAT--CA---------CA----A-A---GTTTT-T-A----ACATCATTTT-TATGG-TGAAAG-A-------G-TA-TTATA-A-ATTAAATATTCA
gi|18 : aaaaacgttctgtcctatgatacG-GTC-TTGGG---ATT--G-TCGTAAGAT--TAT--------CACTT-A-T---TTCTTAT-ATTT-ACATTA-TTT-TACGGATG-AAA-A-------G-TA-Tagcc
gi|19 : TTTCGAAA---GTATCC-AAGACTGAT-TCT------A----------------------AG----------------A--------------------TA-TATCT--TAGGA-CAAGTCGT-Attt
gi|2 : CCTGGTTTTCAAAG---GTATTCTAAGGCTGAT-CCT------A----------------------AG----------------ATAGAG---------------GACTATCT--TAGGA-CAA-TCGT-AAA-----TTG---TA--AATC--AAAGA-TGTGTT-CAGATTGTCCTA--ACA-------AAG-T-----TGGAC--T------TAATAT---TC-TGAGG---AAT--G-CCCGAAGTT--TTTTTTTCCGGTG----A-T---TTTTT-T-T----ATATCA-TTT-TACGGATGAAAA-A-------G-TA-TGATA-GCAAT-ACTTTTCAggacagtct
gi|20 : ggcCA-TTT-TACGG--GAAAAGA-------G-TA-TCATA-ACATT-AAATTTCAatcaaaagagtgaaaatta
gi|21 : ----ACATCA-TTT-TACGGATGAAAA-A-------G-TA-TTATA-GCAa
gi|3 : TTTTCGAAA---GAATCCCAAGATTGAT-CCT------A----------------------AG----------------A--------------------TA-TATCT--TACTA-CAA-
gi|3 : cT-CTT------A----------------------AA----------------A--------------------A--TATCT--TAGAA-CAA-TCGT-AAA-----TTG---TG--AATC--AAAGA-TTCCAT-AAGATAGTCCTA--ACA-------AAG-T-----TGGAC--T------CCAGACG-GTC-TTAAG---GTT--G-TTCTAAG-----------------------C---TTTTT-TAA----ATATCT-TTT-TACGGATGAAAA-A-------A-T----ATA-GCATT-AATTTTCAgccttacaaatgtaggacagtcttaaaaatatcttagaacaatcgtaaattgtgaatcaaagattccataagatagtcctaacaaagttggactccagacggtcttaaggttgttctaagcttttttaaatatctttttacggatgaaaaaatatagcattaattttca
gi|4 : cttttcgaaagaatcccaagattgatcctaagatatatcttactacaagccttacaaatgtaggacagCCTGCTTCT-GAAA---GTATCCTAAGATTGAT-CTT------A----------------------AG----------------A----------------------CTATCT--TAGGA-CAA-TCGT-ATA-----TTG---TT--AGTC--AAAAA-TGTCTT-AGGATTGTCCTA--ACA-------AAA-A-----TGGAC--TTATATGTAAGATG-G------------TT--G-TCGTATGAT--TTT----------------T---TTTTT-T-T----ACATCA-TTT-TACGGATT-AAA-A-------G-TA-TTATA-GAAAT-AATTTACA
gi|5 : GCCTGGTTTTCGAAA---GTATCCTAAGTTCGAT-CC-------A----------------------AG----------------A--------------------GAC-ATCT--TACGA-CGA-TCGC-AAG-----TTG---TA--AATC--AAAGA-TGTCTT-AAGATTGACCTA--ACA-------ACG-T-----TGGAC--T------TAGGATG-GTC-TTAGG---ATT--G-TCGTAAGAT--TAT--------CA----ACC---TTTTT-T-A----ACATCA-TTT-TACGGGTGAAAG-A-------G-TA-TCATA-ACATT-AAATTTCAatcacaagattgaatatcat
gi|6 : CCGGGGTTTCGAAC---ATATCTTA-GAT--AT-TTT------A----------------------GG----------------G----------------------CTATCC--TAGTA-CAA-TCGT-GAA-----TAA---TA--AATC--AAAGA-TGTCTTTAAGATTGTCCTA--ACA-------ATG-T-----TGGAC--T------TAAGATG-GT--TTAAATATATT--G-TCGTACG----------------A----A-T---TTT----------ACATCC-TTT-TACGGATGAATA-A-------G-TA-T-ATA-
gi|7 : aGCCTGGTTTTCGAAA---GAATCCTTAAGTTGAT-CCT------ACAATATTATTAGGACGACTTATAG----------------G--------------------GACTATCT--TAGGA-CA--TCGC-AAA-----TTG---TA--AATC--AA-GA-TGTCTT-AGGATTGGCCAA--ACG--------TG-T-----TGGAC--T------TAGGATG-GTC-TTAGG---A-T--G-ACGTAAAA---TAT--------TAAACCA-C---TTTTT-T-T----ACATCA-TTT-TACGG--GAAAcatgtaacaatcaagtgaaaattat
gi|8 : gGCCGGGTTTTCGAAAAGCGGATCATA----TGAT-CTG------A----------------------A------------------------------------------------TAAGG-TAG-TTGT-AAA----------------ATCCAAAGGACTGTCC--AGGATTGTCCTTTTGCG-------AAG-C-----TG-ACGTT------TGGGATG-TTC-TTAGGT--ATT--G-TCGC-AGATTATAT--------CACAT-A-A---TTTTG-T-ATC--ACACCA-TTTAAATGGGTGAAAA-G-------G--A-TGATACGCATT-TATTT
gi|9 : TTGAT-TGT------A----------------------GG----------------A----------------------CTATCT--TAGGA-CAA-TCGT-AAA-----T------------C--AAAGA-TGTCTG-AAGATTGTCCTA--ACA-------AT--T-----TGGAC--T------T----TT-GTC-TT-------TT--A-----AAGAT--TAT------------------------T-T-A-----CATCC-TAT-TACGGATGAAAA-AGTACACTG-TA-TTATA-GAAAT-AATTTTCAc
Alignments
lowQualScore : 6666666666666666666666666666666666666666666666666666666666666666 33333333333333333333 111111
lowQualScore : 555 2 2 777777 9999999999999999999999999999999999999999999999999999999999999999 33 2 2 2 888888888888888 33 2 4 2 77 8888888 1 2 66666 33 777777 2 5 666 55 2 0 66 0 99999999999999999999 2 777777 2 2 1 2 2 8888888 2 2 5 2 1 3
lowQualScore : ... . . ...... ................................................................ .. . . . ............... .. . . . .. ....... . . ..... .. ...... . . ... .. . . .. . .................... . ...... . . . . . ....... . . . . . .
lowQualScore : 888 5 5 222222 1111111111111111111111111111111111111111111111111111111111111111 22 4 4 7 222222222222222 44 7 3 7 33 7777777 0 7 77777 77 777777 7 3 999 99 5 9 99 1 22222222222222222222 7 111111 4 4 4 8 5 1111111 5 5 3 7 0 1
consensus : GCCTGGTTTTCGAAA---GTATCCTAAGATTGAT-CCT------A----------------------AG----------------A--------------------GACTATCT--TAGGA-CAA-TCGT-AAA-----TTG---TA--AATC--AAAGA-TGTCTT-AAGATTGTCCTA--ACA-------ANG-T-----TGGAC--T------TAAGATG-GTC-TTAGG---ATT--G-TCGTAAGAT--TAT--------CA----A-C---TTTTT-T-A----ACATCA-TTT-TACGGATGAAAA-A-------G-TA-TCATA-GCANT-AATTTTCA
Reference ( family-4324 ) : GCCTGGTTTTCGAAA---GTATCCTAAGATTGAT-CCT------A----------------------AG----------------A--------------------GACTATCT--TAGGA-CAA-TCGT-AAA-----TTG---TA--AATC--AAAGA-TGTCTT-AAGATTGTCCTA--ACA-------ANG-T-----TGGAC--T------TAAGATG-GTC-TTAGG---ATT--G-TCGTAAGAT--TAT--------CA----A-C---TTTTT-T-A----ACATCA-TTT-TACGGATGAAAA-A-------G-TA-TCATA-GCANT-AATTTTCA
gi|1 : GCCAGGTTTTCGATA---GTATCCTACGATTAAT-CCT------C----------------------AG----------------A--------------------TA-TATGT--TAGGACCAG-TCTT-A
gi|1 : gACCCTAAGACC-AT-CC-------A----------------------AGTC--------------C--------------------CACTTTGT--TAGGA-CAA-TCTT-AAGAATATTTGATCTATCATTC--AAAAT-TTTCCT-AAGATAGTCCTAAGACAGTCCTACATG-TAAGACTGGTC--C------TAACATATATC-TGAGG---ATTA-A-TCGTAGGATACTAT--------CG----A-catgtaggactgtcttaggactatcttaggaaaattttgaatgatagatcaaatattcttaagattgtcctaacaaagtgggacttggatggtcttagggttgtcgtatgattatcacacacgttttgttacatcattatacgaatggagaaaaataaaggcattaatttgcaaagaaaaagtgaaaatt
gi|1 : ggccaggtttTAGGACTG-T-CTT------A----------------------GG----------------A----------------------CTATCT--TAGGA-AAA-TTTT-GAA-----TGA---TA--GATC--AAATA-T-TCTT-AAGATTGTCCTA--ACA-------AAG-T-----GGGAC--T------TG-GATG-GTC-TTAGG---GTT--G-TCGTATGAT--TAT--------CAC---A-CACGTTTTG-T-T----ACATCA-TTA-TACGAATGGAGA-A-------A-AA-TAAAG-GCATT-AATTTGCAtgtcgtatgattatcacacacgttttgttacatcattatacgaatggagaaaaataaaggcattaatttgcaaagaaaaagtgaaaatt
gi|10 : ggccaggttttcgatagtatcctacgattaatcctcagatatatgttaggaccagtcttacatgCCTGGTTTTCGAAA---GAATCCTAAGA--GATACCTTTGGACA----------------------AGTCTTTGTGCAGTATTAG--------------------GACTATCT--TAGGA-CAA-TCGT-TAA-----TTG---TA--AATC--AAAGC-TATCTT-AAGATTGTCTTA--ACA-------AAG-T-----TGGAC--T------TGAGATaagaaaaagtgaaaatt
gi|11 : TC--AAAGA-TATCTT-AAAATTGTCTTA--GCA-------ATGTT-----TGGAC--T------CAAGATG-GTCTTTAGA---ATT--GTTCTTAAGAT--TGT--------C-----A-C---TCTTT-T-A----AAATCA-TTT-CACGTAT--AAA-A-------GTTA-TCAAA-GCAAT-AATTTTTA
gi|12 : CCTGGTTTTCGATA---GTATCCTACGATTAAT-CCT------A----------------------AG----------------ATATATGTAGGACTGTCTTAGGACTATCT--TAGGA-CAA-TTTT-AAA-----TGA---TA--GATA--AAATA-T-TCTT-AAGATTGTCCGA--ACA-------AAG-T-----GGGAC--T------g
gi|13 : ATA-GTC-TTACG---ATT--T-TCGTAAGAT--TAT--------CAC---A-G---TTTTT-T-TCGTTACATCA-TTT-TACGGATGAAAA-A-------G-TA-TTATG-GCATT-AATTTTCA
gi|14 : aagtggaaatgcatggagacTC--AAAGA-TATCTT-AAAATTGTCTTA--GCA-------ATG-T-----TGGAC--T------CAAGATG-GTCTTTAGA---ATT--G-TCTTAAGAT--TGT--------C-----A-C---TCTTT-T-A----AAATCA-TTT-CACGTATG-AAA-A-------G-TATTCAAA-GCAAT-AATTTTTAaataataaagtgaaaatc
gi|15 : TC--AAAGA-TATCTT-AAAATTGTCTTA--GCA-------ATG-T-----TGGAC--T------CAAGATG-GTC-TTAGA---ATT--G-TCTTAAGAT--TGT--------CA----C-T---CTTTT-T-A----AAATCA-TTT-CACGTATGGAAA-A-------G-TA-TCAAA-GCAAT-AATTT
gi|16 : TTTGGAAA---GTATCCTAAGATCGAT-CCT------A----------------------AG----------------A--------------------TA-TGTCT--ACAGA-CAA-
gi|16 : --------------------GACTATCTGTTAG-A-CAA-TCGTTAAA-----TTG---T---AATC--AAgtgttgggacagggtttcgttgactatctgttagacaatcgttaaattgtaatcaa
gi|17 : tttggaaagtatcctaagatcgatcctaagatatgtctacagacaagtgttgggacagggtttcgttAGG---ATTTTG-TCTTAAGAT--CA---------CA----A-A---GTTTT-T-A----ACATCATTTT-TATGG-TGAAAG-A-------G-TA-TTATA-A-ATTAAATATTCA
gi|18 : aaaaacgttctgtcctatgatacG-GTC-TTGGG---ATT--G-TCGTAAGAT--TAT--------CACTT-A-T---TTCTTAT-ATTT-ACATTA-TTT-TACGGATG-AAA-A-------G-TA-Tagcc
gi|19 : TTTCGAAA---GTATCC-AAGACTGAT-TCT------A----------------------AG----------------A--------------------TA-TATCT--TAGGA-CAAGTCGT-Attt
gi|2 : CCTGGTTTTCAAAG---GTATTCTAAGGCTGAT-CCT------A----------------------AG----------------ATAGAG---------------GACTATCT--TAGGA-CAA-TCGT-AAA-----TTG---TA--AATC--AAAGA-TGTGTT-CAGATTGTCCTA--ACA-------AAG-T-----TGGAC--T------TAATAT---TC-TGAGG---AAT--G-CCCGAAGTT--TTTTTTTCCGGTG----A-T---TTTTT-T-T----ATATCA-TTT-TACGGATGAAAA-A-------G-TA-TGATA-GCAAT-ACTTTTCAggacagtct
gi|20 : ggcCA-TTT-TACGG--GAAAAGA-------G-TA-TCATA-ACATT-AAATTTCAatcaaaagagtgaaaatta
gi|21 : ----ACATCA-TTT-TACGGATGAAAA-A-------G-TA-TTATA-GCAa
gi|3 : TTTTCGAAA---GAATCCCAAGATTGAT-CCT------A----------------------AG----------------A--------------------TA-TATCT--TACTA-CAA-
gi|3 : cT-CTT------A----------------------AA----------------A--------------------A--TATCT--TAGAA-CAA-TCGT-AAA-----TTG---TG--AATC--AAAGA-TTCCAT-AAGATAGTCCTA--ACA-------AAG-T-----TGGAC--T------CCAGACG-GTC-TTAAG---GTT--G-TTCTAAG-----------------------C---TTTTT-TAA----ATATCT-TTT-TACGGATGAAAA-A-------A-T----ATA-GCATT-AATTTTCAgccttacaaatgtaggacagtcttaaaaatatcttagaacaatcgtaaattgtgaatcaaagattccataagatagtcctaacaaagttggactccagacggtcttaaggttgttctaagcttttttaaatatctttttacggatgaaaaaatatagcattaattttca
gi|4 : cttttcgaaagaatcccaagattgatcctaagatatatcttactacaagccttacaaatgtaggacagCCTGCTTCT-GAAA---GTATCCTAAGATTGAT-CTT------A----------------------AG----------------A----------------------CTATCT--TAGGA-CAA-TCGT-ATA-----TTG---TT--AGTC--AAAAA-TGTCTT-AGGATTGTCCTA--ACA-------AAA-A-----TGGAC--TTATATGTAAGATG-G------------TT--G-TCGTATGAT--TTT----------------T---TTTTT-T-T----ACATCA-TTT-TACGGATT-AAA-A-------G-TA-TTATA-GAAAT-AATTTACA
gi|5 : GCCTGGTTTTCGAAA---GTATCCTAAGTTCGAT-CC-------A----------------------AG----------------A--------------------GAC-ATCT--TACGA-CGA-TCGC-AAG-----TTG---TA--AATC--AAAGA-TGTCTT-AAGATTGACCTA--ACA-------ACG-T-----TGGAC--T------TAGGATG-GTC-TTAGG---ATT--G-TCGTAAGAT--TAT--------CA----ACC---TTTTT-T-A----ACATCA-TTT-TACGGGTGAAAG-A-------G-TA-TCATA-ACATT-AAATTTCAatcacaagattgaatatcat
gi|6 : CCGGGGTTTCGAAC---ATATCTTA-GAT--AT-TTT------A----------------------GG----------------G----------------------CTATCC--TAGTA-CAA-TCGT-GAA-----TAA---TA--AATC--AAAGA-TGTCTTTAAGATTGTCCTA--ACA-------ATG-T-----TGGAC--T------TAAGATG-GT--TTAAATATATT--G-TCGTACG----------------A----A-T---TTT----------ACATCC-TTT-TACGGATGAATA-A-------G-TA-T-ATA-
gi|7 : aGCCTGGTTTTCGAAA---GAATCCTTAAGTTGAT-CCT------ACAATATTATTAGGACGACTTATAG----------------G--------------------GACTATCT--TAGGA-CA--TCGC-AAA-----TTG---TA--AATC--AA-GA-TGTCTT-AGGATTGGCCAA--ACG--------TG-T-----TGGAC--T------TAGGATG-GTC-TTAGG---A-T--G-ACGTAAAA---TAT--------TAAACCA-C---TTTTT-T-T----ACATCA-TTT-TACGG--GAAAcatgtaacaatcaagtgaaaattat
gi|8 : gGCCGGGTTTTCGAAAAGCGGATCATA----TGAT-CTG------A----------------------A------------------------------------------------TAAGG-TAG-TTGT-AAA----------------ATCCAAAGGACTGTCC--AGGATTGTCCTTTTGCG-------AAG-C-----TG-ACGTT------TGGGATG-TTC-TTAGGT--ATT--G-TCGC-AGATTATAT--------CACAT-A-A---TTTTG-T-ATC--ACACCA-TTTAAATGGGTGAAAA-G-------G--A-TGATACGCATT-TATTT
gi|9 : TTGAT-TGT------A----------------------GG----------------A----------------------CTATCT--TAGGA-CAA-TCGT-AAA-----T------------C--AAAGA-TGTCTG-AAGATTGTCCTA--ACA-------AT--T-----TGGAC--T------T----TT-GTC-TT-------TT--A-----AAGAT--TAT------------------------T-T-A-----CATCC-TAT-TACGGATGAAAA-AGTACACTG-TA-TTATA-GAAAT-AATTTTCAc
blockSeqs : AGC A A TTGGAC CAATATTATTAGGACGACTTATAGGGAC GT . G T TGATA CA C A T TT . A T . GT TATATG . T TAT TT T TA TTTTCCGGTGAT A TCGTT T A A A G GTACACT T T C C A A
blockSeqs : . G . . AGATATATGTAGGACTGTCTTAGGAC . . . . TTGTA . . A . . . A . . . . . T T . . . TAAACCAC . ATTT . . A G . . . . T . T .
blockSeqs : . A . . AGTCTTTGTGCAGTATTAGGAC . . . . TGATA . . A . . . T . . . . . . . . . . CACTTAT . ATC . . A A . . . . C . A .
blockSeqs : . C . . AGATAGAGGAC . . . . TTGTA . . A . . . A . . . . . . . . . . CACATAA . AA . . A A . . . . C . A .
blockSeqs : . A . . AGTCCCAC . . . . TTGTG . . G . . . T . . . . . . . . . . CACAG . A . . A A . . . . T . T .
blockSeqs : . A . . AGAGAC . . . . TTGTT . . T . . . T . . . . . . . . . . CAACC . A . . A A . . . . G . A .
blockSeqs : . A . . AGATA . . . . TTGTA . . G . . . A . . . . . . . . . . CACT . A . . A A . . . . C . T .
blockSeqs : . A . . AGATA . . . . TAATA . . G . . . A . . . . . . . . . . CAAA . A . . A A . . . . T . T .
blockSeqs : . A . . AGATA . . . . TTGTA . . G . . . A . . . . . . . . . . CAC . T . . A A . . . . T . A .
blockSeqs : . A . . GGAC . . . . TTGT . . G . . . C . . . . . . . . . . CAC . T . . G A . . . . C . T .
blockSeqs : . A . . AAAA . . . . T . . G . . . T . . . . . . . . . . AAT . A . . A A . . . . G . T .
blockSeqs : . . . AGAC . . . . . . . G . . . T . . . . . . . . . . C . T . . G A . . . . T . A .
blockSeqs : . . . GGGC . . . . . . . . . . A . . . . . . . . . . T . A . . A . . . . . . .
blockSeqs : . . GGAC . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . A . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : TTGTA********** ** ******* ***** ** ** CAC*****************
originalCons : GCCTGGTTTTCGAAA---GTATCCTAAGATTGAT-CCT------A----------------------AG----------------A--------------------GACTATCT--TAGGA-CAA-TCGT-AAA-----TTG---TA--AATC--AAAGA-TGTCTT-AAGATTGTCCTA--ACA-------ANG-T-----TGGAC--T------TAAGATG-GTC-TTAGG---ATT--G-TCGTAAGAT--TAT--------CA----A-C---TTTTT-T-A----ACATCA-TTT-TACGGATGAAAA-A-------G-TA-TCATA-GCANT-AATTTTCA
finalCons : GCCTGGTTTTCGAAA---GTATCCTAAGATTGAT-CCT------A----------------------AG----------------A--------------------GACTATCT--TAGGA-CAA-TCGT-AAATTGTA----------AATC--AAAGA-TGTCTT-AAGATTGTCCTA--ACA-------ANG-T-----TGGAC--T------TAAGATG-GTC-TTAGG---ATT--G-TCGTAAGAT--TATCAC-----------------TTTTT-T-A----ACATCA-TTT-TACGGATGAAAA-A-------G-TA-TCATA-GCANT-AATTTTCA
Alignments
lowQualScore : 6666666666666666666666666666666666666666666666666666666666666666 333333333333333333333333 1111111
lowQualScore : 555 2 2 777777 9999999999999999999999999999999999999999999999999999999999999999 33 2 2 2 888888888888888 33 2 4 2 77 8888888 1 66666 2 33 777777 1 2 5 666 55 2 0 444444444444444444444444 2 7777777 2 2 1 2 2 8888888 2 2 5 2 1 3
lowQualScore : ... . . ...... ................................................................ .. . . . ............... .. . . . .. ....... . ..... . .. ...... . . . ... .. . . ........................ . ....... . . . . . ....... . . . . . .
lowQualScore : 888 5 5 222222 1111111111111111111111111111111111111111111111111111111111111111 22 4 4 7 222222222222222 44 7 3 7 33 7777777 0 77777 7 77 777777 9 7 0 999 99 5 9 111111111111111111111111 7 9999999 4 4 4 8 5 1111111 5 5 3 7 0 1
consensus : GCCTGGTTTTCGAAA---GTATCCTAAGATTGAT-CCT------A----------------------AG----------------A--------------------GACTATCT--TAGGA-CAA-TCGT-AAA-----TTG---TA--AATC--AAAGA-TGTCTT-AAGATTGTCCTA--ACA-------ANGT-----T-GGAC--T------TAAGATG-GTCTT-AGG---ATT--GT-CGTAAGAT--T---------ATCA--C-----T-TTTTT-A-----ACATCA-TTT-TACGGATGAAAA-A-------G-TA-TCATA-GCANT-AATTTTCA
Reference ( family-4324 ) : GCCTGGTTTTCGAAA---GTATCCTAAGATTGAT-CCT------A----------------------AG----------------A--------------------GACTATCT--TAGGA-CAA-TCGT-AAA-----TTG---TA--AATC--AAAGA-TGTCTT-AAGATTGTCCTA--ACA-------ANGT-----T-GGAC--T------TAAGATG-GTCTT-AGG---ATT--GT-CGTAAGAT--T---------ATCA--C-----T-TTTTT-A-----ACATCA-TTT-TACGGATGAAAA-A-------G-TA-TCATA-GCANT-AATTTTCA
gi|1 : GCCAGGTTTTCGATA---GTATCCTACGATTAAT-CCT------C----------------------AG----------------A--------------------TA-TATGT--TAGGACCAG-TCTT-A
gi|1 : gACCCTAAGACC-AT-CC-------A----------------------AGTC--------------C--------------------CACTTTGT--TAGGA-CAA-TCTT-AAGAATATTTGATCTATCATTC--AAAAT-TTTCCT-AAGATAGTCCTAAGACAGTCCTACATGTAAGACT-GGTC--C------TAACATATATCTG-AGG---ATTA-AT-CGTAGGATACT---------ATCcatgtaggactgtcttaggactatcttaggaaaattttgaatgatagatcaaatattcttaagattgtcctaacaaagtgggacttggatggtcttagggttgtcgtatgattatcacacacgttttgttacatcattatacgaatggagaaaaataaaggcattaatttgcaaagaaaaagtgaaaatt
gi|1 : ggccaggttttcTAGGACTG-T-CTT------A----------------------GG----------------A----------------------CTATCT--TAGGA-AAA-TTTT-GAA-----TGA---TA--GATC--AAATA-T-TCTT-AAGATTGTCCTA--ACA-------AAGT-----G-GGAC--T------T-GGATG-GTCTT-AGG---GTT--GT-CGTATGAT--T---------ATCA--CACACGT-TTTGT-T-----ACATCA-TTA-TACGAATGGAGA-A-------A-AA-TAAAG-GCATT-AATTTGCAtgtcgtatgattatcacacacgttttgttacatcattatacgaatggagaaaaataaaggcattaatttgcaaagaaaaagtgaaaatt
gi|10 : ggccaggttttcgatagtatcctacgattaatcctcagatatatgttaggaccagtcttacatgCCTGGTTTTCGAAA---GAATCCTAAGA--GATACCTTTGGACA----------------------AGTCTTTGTGCAGTATTAG--------------------GACTATCT--TAGGA-CAA-TCGT-TAA-----TTG---TA--AATC--AAAGC-TATCTT-AAGATTGTCTTA--ACA-------AAGT-----T-GGAC--T------TGAGATaagaaaaagtgaaaatt
gi|11 : TC--AAAGA-TATCTT-AAAATTGTCTTA--GCA-------ATGT-----TTGGAC--T------CAAGATG-GTCTTTAGA---ATT--GTTCTTAAGAT--T---------GTCA--C-----T-CTTTT-A-----AAATCA-TTT-CACGTAT--AAA-A-------GTTA-TCAAA-GCAAT-AATTTTTA
gi|12 : CCTGGTTTTCGATA---GTATCCTACGATTAAT-CCT------A----------------------AG----------------ATATATGTAGGACTGTCTTAGGACTATCT--TAGGA-CAA-TTTT-AAA-----TGA---TA--GATA--AAATA-T-TCTT-AAGATTGTCCGA--ACA-------AAGT-----G-GGAC--T------g
gi|13 : ATA-GTCTT-ACG---ATT--TT-CGTAAGAT--T---------ATCA--CAGT--T-TTTTT-CGTT--ACATCA-TTT-TACGGATGAAAA-A-------G-TA-TTATG-GCATT-AATTTTCA
gi|14 : aagtggaaatgcatggagacTC--AAAGA-TATCTT-AAAATTGTCTTA--GCA-------ATGT-----T-GGAC--T------CAAGATG-GTCTTTAGA---ATT--GT-CTTAAGAT--T---------GTCA--C-----T-CTTTT-A-----AAATCA-TTT-CACGTATG-AAA-A-------G-TATTCAAA-GCAAT-AATTTTTAaataataaagtgaaaatc
gi|15 : TC--AAAGA-TATCTT-AAAATTGTCTTA--GCA-------ATGT-----T-GGAC--T------CAAGATG-GTCTT-AGA---ATT--GT-CTTAAGAT--T---------GTCA--C-----TCTTTTT-A-----AAATCA-TTT-CACGTATGGAAA-A-------G-TA-TCAAA-GCAAT-AATTT
gi|16 : TTTGGAAA---GTATCCTAAGATCGAT-CCT------A----------------------AG----------------A--------------------TA-TGTCT--ACAGA-CAA-
gi|16 : --------------------GACTATCTGTTAG-A-CAA-TCGTTAAA-----TTG---T---AATC--AAgtgttgggacagggtttcgttgactatctgttagacaatcgttaaattgtaatcaa
gi|17 : tttggaaagtatcctaagatcgatcctaagatatgtctacagacaagtgttgggacagggtttcgtt-AGG---ATTTTGT-CTTAAGAT--C---------ACAA--A-----G-TTTTT-A-----ACATCATTTT-TATGG-TGAAAG-A-------G-TA-TTATA-A-ATTAAATATTCA
gi|18 : aaaaacgttctgtcctatgatacG-GTCTT-GGG---ATT--GT-CGTAAGAT--T---------ATCA--CTTA--T-TTCTT-ATATTTACATTA-TTT-TACGGATG-AAA-A-------G-TA-Tagcc
gi|19 : TTTCGAAA---GTATCC-AAGACTGAT-TCT------A----------------------AG----------------A--------------------TA-TATCT--TAGGA-CAAGTCGT-Attt
gi|2 : CCTGGTTTTCAAAG---GTATTCTAAGGCTGAT-CCT------A----------------------AG----------------ATAGAG---------------GACTATCT--TAGGA-CAA-TCGT-AAA-----TTG---TA--AATC--AAAGA-TGTGTT-CAGATTGTCCTA--ACA-------AAGT-----T-GGAC--T------TAATAT---TCTG-AGG---AAT--GC-CCGAAGTT--TTTTTTTCCGGTGA--T-----T-TTTTT-T-----ATATCA-TTT-TACGGATGAAAA-A-------G-TA-TGATA-GCAAT-ACTTTTCAggacagtct
gi|20 : ggcCA-TTT-TACGG--GAAAAGA-------G-TA-TCATA-ACATT-AAATTTCAatcaaaagagtgaaaatta
gi|21 : -----ACATCA-TTT-TACGGATGAAAA-A-------G-TA-TTATA-GCAa
gi|3 : TTTTCGAAA---GAATCCCAAGATTGAT-CCT------A----------------------AG----------------A--------------------TA-TATCT--TACTA-CAA-
gi|3 : cT-CTT------A----------------------AA----------------A--------------------A--TATCT--TAGAA-CAA-TCGT-AAA-----TTG---TG--AATC--AAAGA-TTCCAT-AAGATAGTCCTA--ACA-------AAGT-----T-GGAC--T------CCAGACG-GTCTT-AAG---GTT--GT-TCTAAG--------------------C-----T-TTTTTAA-----ATATCT-TTT-TACGGATGAAAA-A-------A-T----ATA-GCATT-AATTTTCAgccttacaaatgtaggacagtcttaaaaatatcttagaacaatcgtaaattgtgaatcaaagattccataagatagtcctaacaaagttggactccagacggtcttaaggttgttctaagcttttttaaatatctttttacggatgaaaaaatatagcattaattttca
gi|4 : cttttcgaaagaatcccaagattgatcctaagatatatcttactacaagccttacaaatgtaggacagCCTGCTTCT-GAAA---GTATCCTAAGATTGAT-CTT------A----------------------AG----------------A----------------------CTATCT--TAGGA-CAA-TCGT-ATA-----TTG---TT--AGTC--AAAAA-TGTCTT-AGGATTGTCCTA--ACA-------AAAA-----T-GGAC--TTATATGTAAGATG-G------------TT--GT-CGTATGAT--T---------TT----T-----T-TTTTT-T-----ACATCA-TTT-TACGGATT-AAA-A-------G-TA-TTATA-GAAAT-AATTTACA
gi|5 : GCCTGGTTTTCGAAA---GTATCCTAAGTTCGAT-CC-------A----------------------AG----------------A--------------------GAC-ATCT--TACGA-CGA-TCGC-AAG-----TTG---TA--AATC--AAAGA-TGTCTT-AAGATTGACCTA--ACA-------ACGT-----T-GGAC--T------TAGGATG-GTCTT-AGG---ATT--GT-CGTAAGAT--T---------ATCAACC-----T-TTTTT-A-----ACATCA-TTT-TACGGGTGAAAG-A-------G-TA-TCATA-ACATT-AAATTTCAatcacaagattgaatatcat
gi|6 : CCGGGGTTTCGAAC---ATATCTTA-GAT--AT-TTT------A----------------------GG----------------G----------------------CTATCC--TAGTA-CAA-TCGT-GAA-----TAA---TA--AATC--AAAGA-TGTCTTTAAGATTGTCCTA--ACA-------ATGT-----T-GGAC--T------TAAGATG-GT-TT-AAATATATT--GT-CGTACGA----------------A--T-----T-TT----------ACATCC-TTT-TACGGATGAATA-A-------G-TA-T-ATA-
gi|7 : aGCCTGGTTTTCGAAA---GAATCCTTAAGTTGAT-CCT------ACAATATTATTAGGACGACTTATAG----------------G--------------------GACTATCT--TAGGA-CA--TCGC-AAA-----TTG---TA--AATC--AA-GA-TGTCTT-AGGATTGGCCAA--ACG--------TGT-----T-GGAC--T------TAGGATG-GTCTT-AGG---A-T--GA-CGTAAAATA-TTAA------ACCA--C-----T-TTTTT-T-----ACATCA-TTT-TACGG--GAAAcatgtaacaatcaagtgaaaattat
gi|8 : gGCCGGGTTTTCGAAAAGCGGATCATA----TGAT-CTG------A----------------------A------------------------------------------------TAAGG-TAG-TTGT-AAA----------------ATCCAAAGGACTGTCC--AGGATTGTCCTTTTGCG-------AAGC-----T-G-ACGTT------TGGGATG-TTCTT-AGGT--ATT--GT-CGC-AGATTAT---------ATCA--CATAA-T-TTTGT-ATC---ACACCA-TTTAAATGGGTGAAAA-G-------G--A-TGATACGCATT-TATTT
gi|9 : TTGAT-TGT------A----------------------GG----------------A----------------------CTATCT--TAGGA-CAA-TCGT-AAA-----T------------C--AAAGA-TGTCTG-AAGATTGTCCTA--ACA-------AT-T-----T-GGAC--T------T----TT-GTCTT--------TT--A-----AAGAT--T---------AT---------------TT-A------CATCC-TAT-TACGGATGAAAA-AGTACACTG-TA-TTATA-GAAAT-AATTTTCAc