lowQualScore : 66666666666666 22 4444444 1 33333 1111 2222222 2 111 1111 11 11 2222 2222222 333 11 11 333333333 2 11 11 1111 11 11 222222 111 11 11111 111 33333 111 22 222222222 333333 33333333333333333333 2 22 11 2 2222 111 11 1111111 2222 111111 111111 1 1 1 111111 222 1 1 1 1111 3333333 1 11 3333 11111 2 11 11111 22 333 444 1 1 22 111 1 111 2 11 2 11111 1 11 11111 111 1 111 111 555555555555555 111 11 111 222222222 3 3 11111 44
lowQualScore : 8 11111111111111 8 99 0 6666666 11 8 0 8 8 33333 8 8 0 8 8 3333 8 8 2222222 6 0 6 6 6 6 6 6 99 6 6 6 6 99 6 6 111 99 6 6 6 9999 99 6 6 6 1 6 8 8 00 0 8 888 8 8 11 9 1111 3333333 8 0 0 444 8 0 8 0 11 8 8 99 0 8 0 88 0 000000000 0 3 8 8 8 99 8 8 8 8 11 8 8 9999 8 8 8 55 11 8 000000 8 8 5 8 000 88 11 8 99999 8 8 8 6 6 7 6 6 8 444 00000 8 8 8 444 0 44 8 8 0 8 0 8 0 8 0 444444444 8 5 8 0 0 8 8 666666 6 5 3 8 8 66666666666666666666 99 6 6 6 6 4 99 6 99 22 6 6 0 1 0 22 77 0 33 7 0 5 1111 5 444 5 66 77 1 5 5555555 77 4 2222 666666 777777 8 5 77 1 1 1 3 0 5 5 5 11 888 77 5 1 777777 5 222 5 1 5 7 1 55 5 5 6 0 5 5 5 5 2 5 5 77 5 7777 5 4444444 5 77 5 5 1 5 5 5 9999 5 5 9 44 5 5 5 77 5 5 6 99 3333 6 99 6 66666 6 99 6 6 6 6 6 6 6 6 6 6 55 77 99 33333 66 6 6 6 6 111 6 888 7 1 9 6 99 6 6 6 88 77 7 11 8 6 555 0 8 0 8 8 8 88 33 111 88 8 8 0 0 88 8 8 6 3 0 11 1 8 0 8 8 6 3 88888 6 1 3 3 6 88 6 77 44444 555 111 5 1 5 5 222 0 5 5 555 77 777777777777777 000 5 3 5 4 6 55 111 6 6 666666666 6 6 99 6 99 6 6 6 6 6 2 3 6 3 11111 6 33
lowQualScore : . .............. . .. . ....... .. . . . . ..... . . . . . .... . . ....... . . . . . . . . .. . . . . .. . . ... .. . . . .... .. . . . . . . . .. . . ... . . .. . .... ....... . . . ... . . . . .. . . .. . . . .. . ......... . . . . . .. . . . . .. . . .... . . . .. .. . ...... . . . . ... .. .. . ..... . . . . . . . . . ... ..... . . . ... . .. . . . . . . . . . ......... . . . . . . . ...... . . . . . .................... .. . . . . . .. . .. .. . . . . . .. .. . .. . . . .... . ... . .. .. . . ....... .. . .... ...... ...... . . .. . . . . . . . . .. ... .. . . ...... . ... . . . . . .. . . . . . . . . . . . .. . .... . ....... . .. . . . . . . .... . . . .. . . . .. . . . .. .... . .. . ..... . .. . . . . . . . . . . .. .. .. ..... .. . . . . ... . ... . . . . .. . . . .. .. . .. . . ... . . . . . . .. .. ... .. . . . . .. . . . . . .. . . . . . . . ..... . . . . . .. . .. ..... ... ... . . . . ... . . . ... .. ............... ... . . . . . .. ... . . ......... . . .. . .. . . . . . . . . . ..... . ..
lowQualScore : 0 44444444444444 0 22 8 0000000 66 0 0 0 0 00000 0 0 8 0 0 0000 0 0 0000000 7 0 7 7 7 7 7 7 22 7 7 7 7 22 7 7 777 22 7 7 7 5555 22 7 7 7 0 7 0 0 66 8 0 888 0 0 00 0 6666 8888888 0 8 8 222 0 8 0 8 00 0 0 00 8 0 8 88 8 000000000 0 0 0 0 0 00 0 0 0 0 00 0 0 0000 0 0 0 66 00 0 000000 0 0 0 0 000 88 00 0 88888 0 0 0 7 7 3 7 7 0 000 22222 0 0 0 000 8 22 0 0 8 0 8 0 8 0 8 444444444 0 0 0 8 8 0 0 666666 4 6 8 0 0 44444444444444444444 22 7 7 7 7 2 22 7 22 55 7 7 3 0 7 99 99 1 77 6 4 5 1111 0 666 0 99 44 7 7 3333333 99 3 6666 444444 777777 7 7 99 7 4 4 9 7 7 7 7 44 666 99 7 4 000000 7 999 7 4 7 1 4 11 0 0 2 0 0 0 0 0 5 0 0 99 7 3333 7 3333333 7 99 7 7 4 7 7 7 9999 7 7 9 66 0 7 7 99 7 7 7 22 7777 7 22 7 22222 7 22 7 7 7 7 7 7 7 7 7 7 88 55 22 88888 88 7 7 7 7 000 7 222 3 3 5 7 22 7 7 7 55 77 3 44 0 7 222 2 0 8 0 0 0 88 88 888 88 0 0 6 8 88 0 0 0 4 8 00 0 0 8 0 0 7 3 55555 7 7 3 5 7 33 7 99 33333 999 777 7 4 7 7 333 1 7 7 999 99 111111111111111 000 7 6 7 3 7 88 777 7 7 555555555 7 7 22 7 22 7 7 7 7 7 5 3 7 3 88888 7 00
consensus : GCGGAAG-TTTA------G-A-----AT-GAGGTGCTACAGTAAAA--GTATATA-AAGCGGGGCGCGGT-GC-ATT--GGCAGTCACTTT-CGACA-TCATG-T-CAG-A--CA-AG-TTA--CCT--AGT-GGACTT-CCACGC-AGTT-ATA-TTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-G-ATCA-G--CT-GAA-CAGA---CAA--C-GGCAG-CGT-GAATTACAA-CTCC--GCAGAGA-GAA-TCAACG-GCG-A-CT-ACAGTATT-TAC-AGCGG-GG-AGG--GGCGAAAAAA--GAAAC------TC-ATTTCGGATTATTAC---AAA-ATTCAAC-TGGAACGA--GGGCGTCAA-TC-ACGGAAAA-TTTAAAG-TCAAGGAAA-ATGTCTACAATGTT-G-C---CATCAAGCCCATCCCGG-AGA-AA-GAA--AACA-CA-GCCT-T-C--ATTCGTCG-CC-TCTTCC---GG-G-ATATGC-TNAAAAA--TG-TGA-AAA-CA-GGAAATGCAG-TGCAACCC-CAA-T-GATT-ATCT--ACGTTT-GAATATTCGG--CA-CC-GTCTCTGG-A-CTCTGAT-ATTTG-GTATGAATTTAC-GCAG-TCAAAAC-AG---CT----NAACGAGGACAAAA-TT-CTG-AA---CAAAATAG-AATCCG-TGC-AGCAATC-TAA-AAAGGAATTCC-TAATCAC-AG---ACGGG-GCCGTGCAG-TTTGATTTTTTC-CATG-TGGA---AATACCCACAAG-GCA-GCGGAG--GGA----GATCT---A-AAAA--C-ATCTGCATG-TGGATAA-AGAGAAATTTCAAAACT-CC-AAGAGAGCGAT--CGTT--CGCA-TTCAAAATCCTGACGATTCAT-T--GTGTCTACCCCGGGCTATTGTNGTAG-CGCGTC--TACA-CA-GCCAGAAATCAAATGA-CCCG-GCA-TGGGAAACGA-AATGGNTAA---G-NATGAGG-NNNGGGGAT------ACACAGGCTCTCGAC-CAGAAA--CGAC-AAGCGA-TAGCCT-TGATG-GAACA-AGCGGGGT-G-TG--CTATG-AACCAA-CCGTGTGGGCCN-CGTGAAT-GGG--GGCAATTACA-G-CA-GGCGCTCG-CCCGCAATATCG-ATTG-AAAATA-TTTCAATTCAAAACG-AAT-ACATCTCGTTT-GCG-AC-TGGAACCTA-T-TTACAAAGGA--CAGG-GGAACGGG-ACTTGTTT---GAA-T-A--TCCT-GCT-GGATAA-CGA-GC-ATT-ACGATG-CCAT-T-GTCTCTATG-CCCGGAGTGACGGAAAATC-AATACTATT-GC--GATTATTGC-GATG-TT-GG--TTATAGAAA-TATT-GA--AG-A---T-CA-CCGGA--CCGTGTG-TC-CTCATC-G-A-TGC-TCG-TTT-TGTTTAGCCGA-CACCCCCTGTACCCCGGACGGGACTCAGACGA--ATTGC--CCTCATTGT-AAAGGA-TTTTT-CA-GAAATGC-AGCTTTGTT-ACCA---GAACCATTTAAAA-CCCTACAGC-AG--TAA-TACAA-C-GACCACGGTG-T-GCAGTTTAATG-GGGCGCTGTGACCAGTGTAA-GAAATGGATGTCCAAGCAA-TTAT-TAAAACGCC-ACGCTTG-TGGAGG-TCAAACACAATGCCGC-A-TCTGTC-AAAAAGTCGT-CACCATGCC-TCATCACTGCTTTGTACAGACG-AAACCCA-AACCTAAAAAAGAAAAGG-ACTTG-AAAATGTACAT--TTATTACG-ATTTTG-AAT-GCAGTCAGGAAA-AC-GGAATTCACA---T-CCCAAT-TTAT-GCGT-GGC--AG-ATCGTGT--GTGTCA-----AC-A-TTG--CGACAGT-CTGGA-TAT-C-GACA-AGCCCTG-TCCTC-ATTGTA-NA--GGAT-T------T------CAACGGCG---CTT-CATATTTCA-AGGACCCGACACGT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGTCCGA-GACC-GACGAG--CAA-GGCTATGTGGAA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCNCACAATTT-CAAAGGAT---A-CG-ATGGGCAGTTTAT-TTTGAATTACCTG
Reference ( gi|4 ) : GCGGAAG-TTTA------G-------GT-GAGGT-CTACAG-------GTATATA-AAGCGGGGCGCAGT-GC-ATT--G-TAGTCACTTT-CGACA-TCATG-T-CAG-A--CA-AG-TTA--C-T--AGT-G-ACTT-CCACGC-AGTT-ATA-TTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-G-ATCA-G--CT-GAA-CAGA---CAA--C-GGCAG-CGT-GAATTACAA-CTCC--GCAGAGA-GAA-TCAACG-GCG-A-CT-ACAATATT-TAC-AGCGG-GG-AGG--GGCAAAAAAA--GAAAC------TC-ATTTCGGATTATTACC--AAA-ATTCAAC-TGGAACGA--GGGCGTCAA-TC-ACGGAAA--TTTAAAG-TCAAGGAAA-ATGTCTACAATG-T-G-C---CATCAAGGCTATTCCAG-AGA-AA-GAA--AACA-CA-GCCT-T-C--ATTCGTCG-CC-TCTTCC---GG-G-ATATGC-TGAAAAA--TG-TG--AA--CA-GGAAATGCAG-TGCAACCC-CAA-T-GATT-ATCT--ACGTTT-GAATATTCGG--CA-CC-GTCTCTGG-A-CTCTGAT-ATTTG-GTATGAATTTAC-GCAG-TCAAAAC-AG---CT----GAACGAGGACAAAA-TT-CTG-AA---CAAAATAGAAATCCG-TGC-AGCAATC-TAA-AAAGGAATTCC-TAATCAC-AG---AC-GG-GCCGTGCAG-TTTGATTTTTTC-CATG-TCAA---AATACCCACAAG-GCA-GCGGA---GGA----GATCT---A-AAAA--C-ATCTGCATG-TGG-TAA-AGAGAAATTTCAAAACT-CC-AAGAGAGCGAT--CGTT--CGCA-TTCAAAATCCTGACGATTCAT-T--GTGTCTACCCCGGGCTATTGTGGTAGACGCGAC--TACA-CA-GTCAGAAATCAAATGA-CCC--GCA-TGGGAAACGA-AATGGCTAA---G-AATGCGG-AAAGGAGAT------ACACGGAGTGTTGAC-CAGAAA--CAAC-AAGCGA-TAACCT-TGATG-GAACA-AGCGGGGT-G-TG--CTATG-AATCAA-CCGTGTGGGCCT-TGTGAAT-GGG--CGCAATTACA-G-CA-GGCGCTTG-CCCGCAGTATCG-ATTG-AAAATA-TTTCAGTTCAAAACG-AAT-ACATCTCGTTT-GCG-AC-TGGAACCTA-T-TTACAAAGGA--CAGG-GGAACGGG-ACTTGTTT---G-A-T-A--TCCT-GCT-GGATAA-CGA-GC-ATT-ACGATG-CCAT-T-GTTTCTATG-GCCGGAGTGACGGAAAATC-AATACTATT-GC--GATTATTGC-GATG-TT-GG--TTATAGAAAATATT-GA--AG-A---T-CA-CCGGA--CCGTGTG-TC-CT-ATC-G-A-TGC-TCG-TTT-TGTTTAGCCGA-TACCCCCTGTACCCCAGACGGGACTCAGACGA--ATTGC--TCGCATTGTTAAAGGA-TTTTT-CA-GAAATGC-AGC-T-GTT-ACCAAAAGAACCATTTAAAAACCCTACAGC-AG--TAA-TACAA-C-GACCACGGTGGT-GCAGTTTAATG-GGGCGCTGTGACCAGTGTAA-GAAATGGATGTCAAAGAAA-TTAT-TAAAACGCC-ATGCTTG-TGGAGG-TCAAATACAATGCCGC-A-TCTGTC-AAAAAGTCGT-CACCATGCC-TCATCACTGCTTTGTACAGACG-AAACCCA-AACCTAAGAAAGAAAAGG-ATTTGAAAAATGTACAT--TTATTACG-ATTTTG-AAT-GCAGTCAGGAAA-ACGGGAATTCACA---T-CCCAAT-TTAT-GTGT-GGC--AG-ATCGTGT--GTGTCA-----AC-A-TTG--TGACAGT-CTGGA-TAT-C-GACA-AACCCTG-TCCTC-ATTGTC-AA--GGAT-C------T------CAACGGCG---CTT-CATATTTCA-AGGACCCGACACGT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGTCCGA-GACCAGACG-G--CAA-GGCGATGTGGAA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCCCAC-ATTT-C-AAGGAT---A-CG-ATGGGCAGTTTA--TTTGAATTACCTG
gi|12 : GCGGAAA-TTTACAGTGTA-------AT-GAGGT--TATAGTAAAA--GTATATA-AAGCGGTGCGTGGT-GC-ATTT-G-CAGTCACTTT-CGACA-TCATG-T-CAG-A--CA-AG-TTA--CCT--AGT-GGACTT-CCACGC-AGTT-ATA-CTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-G-ATCA-G--CT-GAA-CAGA---CAA--C-GGGAG-CGT-GAATTAC---------------A-GAA-TCAACG-GTG-
gi|8 : tCGGAAG-ACTG------GTA-----AT-GAGGTGCTACAG-------GTATATA-AAGCGGGGCGCAGTTGCTATG--C-CAGTCACTTTTCGACA-TCATGGT-CAG-GATCACAG-TTA--CCT--AGT-GGACTTTCCACGCCAGTTTATA-TTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-G-ATCA-GAACT-GAA-CAGACCCCAA--C-CGCAG-CGT-GAATTA-AA-CTTCCGGCAGAGA-GAGCTCAACG-GCGTA-CT-ACAATATTCTA--AGCGGAGG-AGG--GGGAAAAAAAAGGAAACCGAACTTC-ATTT-GGATTTTTACTCAAAA-ATTCAAC-TGGAACGA--TGGCGTCAATTC-ACGGAAA--TTTAAAGTTCAAGGAAA-ATGTCTACAATGTT-G-C---CATCAAGCCCATCCCGG-AGA-AA-GAA--AATA-CA-GCCTGT-C--ATTCGTCG-CC-TCTTCG---GG-G-ATATGCGTTAATAA--TG-TGAAAA--CAGGGAAATGCAGTTGCAACCCATAA-T---TT-ATCT--ACGTTTGGAATATTCGG--CACCC-GTCTCTGG-A-CTTTGA--ATTTGAGTATGAA-TTACTACAGTTCAAAAC-AGGCTCT-----AACGAGGACAAAA-TT-CTG-AATACCAAAATAG-AATCGG-TGC-AGCAATC-TAACAAAGGAATTCC-TAATCACAAG---AG-GG-GCCGTGCAG-TTTGA----TTC-CATGTTC-----AATACCC-C-AG-GCA-GCGGAG--GGA----GATCA---G-AAAA--C-ATCTGCATG-TGGATAA-AGAGAAATTCAAAAACT-CCAAAGAGAGCGATTCTGTTA-CGCA-TTCAAAATCCTGA-GATTCA--T--GTGTCTACCCCGGCCT-TTGTAGT-GGTGCGGCGTTACA-TA-GCCAGAAATCAAAT-A-CCT--G
gi|5 : GGAAG-TTTA------ACAGTGTAAT-GAGGT--TATAGTAAAAAGGTATATA-AAGCGGG-CGCGAT-GC-ATTCTG-TAGTCACTTT-CGACA-TCA---T-TAGAA--CA-AGTTTA--C-T--AGTGG-ACTT--CACGC-AGTT-ATA-TTGAAC-AGCG-ATTGAGA--TGTTTTGAAT-GAATCA-G--CT-GAA-CAGA---CAA--C-GGCAG-CGTCGAATTACAACCTCC--GCAGAGA-GAA--CAACG-G-G-ACCT-AC-GT-TT-TACAAGCGG-GG-AAGGCGGC--AAAAA--GAAAC------TCAATTTCGGATTATTACA--AAATATTCAAC-TGGAACGGACAGGCGTCAA-T---CGGAAA--TTTAAAG-TC-AGGAAA-ATGTCTA-AATGTT-G-C---CATCAAGCCTATTCCAGAAGACAA-GAAG-AACATCA-G-CT-T-CAAATTCGTCG-CC-TCTTCC---GG-GAATATGC-T--AAAA--T--TGA-AA--CA-GGAAATGCAG-TGCAAACC-TAA-CGGATT-ATCT--ACGTTT-GAATATTCGG--CA-CC-CTCTCTGG-ATTTCTGAT-ATTTG-GTATGAA-TTAC-GCAG-TCAACAC-AG---CT----CAACGAGGACAGAA-TTGCTGCAA---C-AAATAG-AATCCG-TGCAAGCAATC-T-A-AAAGGAAT--C-TAATCAC--G---AC-GGCGCGGTGCAGTTTTGATTTTTTCACAT--TGAA---AATA-CCACAAGAGCAGGCGGAG--GGA----GATCT---AGAAAA--C-ATCTGCATGCTGG-TAA-AGTGAAAATTCAAGACT-CC-AAGAGAGCGAT--CGTT--CGCA-TTAACAACCCTAACGATTCA--T--GTGTCT--CCCGGGCTATTGTTGTAGCCG---T--CACA-AA-G-CAGAAATC-AATGA-CCC--GCA-TGGGAAAC-A-AATGG--AAACGG-CATGAGG-CTTGGGGAT------ACACAGGCTCTCGAC-AGAAAA--CGACAAAGCGAGTAGCCT-TGATT-GAACAGGGAGGGGT-GCTGGTCTATGAAATCAACCCGCGTGGGCCTCCGTGAAT-GGG---GGAATAACACG-CA-GGCCTTTA-TCCCCAATATCG-ATTGAAAAATA-TTTCA-TTTAAAACGTAAT-GCATCTCGTTT-GCG-AC-TGGATCCTA-T-TTACAAAGGAAGCAGGCGGAA-GGG-ACTTGTTTTG-A-A-TAA--TCCT-GCTGGGATAACCGA-GCAATTAACGATGCCCAT-T-GTGTCTATGCACCGGAGTG-CGG-AAATC-AATACTATTAGCTTTATTATTGCGGATG-TT-GG--TTATAGAA---ATT-TG--AG-A---TACA-CCGGA--CCGTCTGCTC-TC-ATC-GTA-TGC-TCG-TTTGTGTTTA-CCGA-CACCCCCTGTACCCCAGACGGGACTCAGACGA--ATTGC--TCTCATTGT--AAGGA-TTTTT-CA-GAAATGCGAACTT-GCTAACCA----GACCATTT-AAAACCCTACAGC-AAGCTAA-TAAAA-C-GA-CACGGTGCTCACAGTTgc
gi|1 : GAAGATTTA------G-------GT-GAGGT-CTAC-G-------GTAT-TATAAGCGGGGCGCAGT-GC-ATT--GGCAGTCACTTT-CGACA-TCATG-T-CAG-A--CA-AG-TTAACC-T--AGT-GGACTT-CCACGC-AGTT-ATA-T-GAAC-AGCG-ATGAAGA--T-TTTTGAATTG-ATCA-G--CT-GAA-CAGA---CAA--CCGGCAG-CGT-GAATTACAA-CTCC--GCAGAGA-GAA-TCAACG-GCG-A-CT-ACAGTATT-TAC-AGCGG-GG-AGG--GGGGAAAAAA----AAC------TC-ATTTCGGAT-ATTA----AAA-ATTCAAC-TGGAACGA--GGGCGTCAA-TC-ACGGAAAAGTTTAAAT-TCAAGGAAA--TGTCTACAATG-TTG-C---CATCAAACCTATCCCGG-AGA-AA-GAA--AACA-CA-GCCT-T-C--ATTCGTCG-CC-TCTTC----GG-G-ATATGC-TGAAAAA--TG-TG--AAA-CA-GGAAATGCAG-TGCAACTC-CAA-T-GAT--ATCT--ACGTTT-GATTATTCGG--C---C-GTCTCTGG-A-TTCTGATTATTTG-GTATGAATTTAC-GC-G-TCAAAAC-TG---CT----GAAC-AGGACAAAA-TT-CTG-AA---CAAAATAGA--TTCG-TGC-AGCAATC-TAA-AAAGAGATTTT-TGATC-C-AGGAGAC-GG-GA-GTGCAG-TTTGATTTTT-C-CAAG-T-GA---AATATCCACAAG-GCA-GCGGG---GGAAAGAGA------A-AAAA--C-ATCTGCATG-TGGATAA-AGAGAAATC-CAAGACTTCC-AAGAGAGCGAT--CGTTT-CGCAATCCAAAATCCT-ACGATTCAT-T--GTGTCTACCC--GGCTATTGTGGTAGTCGCGTC--TACAGCA-CCCAGAAATCAAA-GATCCC--GCA-TGGGAATCAATAATGGTTAA---G-AATGCGG-AA-GGAGAT------ACACAGAGTGTTGACACAGAAA--CAAC-AAGCGA-TAGCGC-TGATA-GAACA-AGCGGGGTTG-TG--CTATG-AACCAA-CCGTGTGGGCCT-CGTGAAT-GGG--GACAATTACA-GGCAAGGCGCTCG-TCCCTAATATAG-AT-G-AAGATAATTTCAATTTAAAACG-AAT-ACATCTCGTTT-GCG-AC-TGGAAACTA-T-TTACAAGGAA--TGGG-GGACGGGG-ACTTGTTTTGAA-A-T-A--TCCTTGCT-GGATAA-CGA-GC-ATT-ACGATG-CTTTGT-GTCTCTATG-CCTGGAGTGACGGAAAATC-AATACTATT-GC--GATTATTGC-GATG-TTTGG--TTATAGAAA-TATTTGA--AG-A---T-CA-CCGGA--CCGTGTG-TC-CTCATC-G-A-TGC-TCG-TTT-TGTTTAGCCGA---CCCCCTGTACC--GGACGGGGCTCAGACGA--ATTGC--CTCTATTGT-AAAGGA-TTTTT-CAAGAAATGC-AGC-TTGTT-ATCA---GAACCATTTAAAA-CCCTACAAC-AG--TAA-TACAA-C-GACCACGGTG-T-GCAGTTTAATG-GGGCGCTGTGACCAGTGTAA-GAAATGGATGTCCAAACAA-TT---TAAAACGCC-ATGCTTG-TGGAGG-TCAAACACAATG-CGCAA-TCTGTC-AAAAAGTCGT-CACCATGCC-TCATCACTGCTTTGTA-AGACG-AAACCCA-AACCTAAAGAAACAAAGG-ACTTG-AAAATGTACAT--TTATTACG-A-TTTG-AAT-GCAGTCAGGAAA-AC-GGAATTCACA---T-CCCAAT-T--T-GCGT-GGC--AGAAACGTGT--GTGTCA-----AC-ATTTG--CGACAGT-CTGGA-TAT-C-GACA-AGCCCTG-TCCTCAATTGTC-AAAGGGAT-C------T------CAACGGCACGTCTT-CATATTTCA-GGGA-CTGCAACGT-T--AAAACAGT---TTATG-AATTG--TCTTACAGTCCGA-GACCCGAC--G--CAA-GGCGATGTGGAA--C-TCAAC--GACGATGCAAGCCACC-A-TC-A--TGCCCAC-ATTT-CAAAGGAT---A-CG-ATGGGCAGTTTAT-TTTGAATTACCTG
gi|3 : -TTTA------T-------GTTGAGGTGTTACAG-------GTA-ATA-AAGCGGG-CGCAGG-CC-ATT--GGCACTCACTTT-CGACAATCATG-TTCAG-A--CA-AG-GTA--C-CTGAGT-G-GACT-CCACGC-AGT--ATAGTTGAACCAGCG-ATTGAGA--T-TTTTGACT-G-ATCA-G--CTTGAA-CAGA---CAAAAC-GGCAG-CGT-GAATTACA--CTCC--GCAGAGATGAA-TCA-CGAGCG-A-CTGACAGTATT-TAC-AGCGG-G--AGG--GGCTAAAAAA--GAAAC-------C-ATTTCGGATTATTAC---AAA-ATTCAACGTGGA-CGA--GGGCGTCAA-TCCACGGAAAA-TTTAAAG-TCAAGGAAAGATGTC-ACAATG-C-C-CTTGCATCAAACCCATCCGAG-AGA-AA-GAATAAATA-CA-GCCT-TTC--ATTCGTCGGCCGTCTTCCCGGGGCG-ATATG--TGAAGAAATTG-AA--AA--CA-AGAAGTGCAG-TGCAACCC-CAAAT-GATTGATCTTGACGTTT---ATATTCGG---A-CCTGTCTCTGG-A-CTCTGAT-ATTTG-GTATGAATTTAC-GCAG-TC-AAAC-AG---CT----CAACGAGGACAAAA-TT-CTG-AA---CAAAATAG-AATCCG-T-C-AGCAATC-TAA-AAAGGAATTCT-AAATCAC-AG---ACGGG-GCCGTTCAG-TTTGATTTTTTC-CATG-T-GA---CATATCCACGAA-GCA-GCGGA---GGA----GATCT---A-AAAAACC-ATCTGCATG-T-G-TAACGGAAAAATTTCAGACTT-CC-AAGAGAGCGAT--CGTT--CGCA-TGAAACAACCTGACGAGTCATGTTGGTGTCTACCCC-GGCTATTGGGGTTAGCGCGTCTGTACA-CA-GCCGAGAATCAAATGA-CCCGGGC--TGTGAAACAA-AATGGTTAA---G-AATGCGG-GAAGGA-AT------ACACAGAGTGT--GC-CAGAAAACCAACGAAGCGA-TAACCT-TGATGCGAACA-AGCGGGGT---TG--CTAGG-AACCAAGCCGTGTGGG-CT-CGTGAAT-GGGGAC-CAATTACA-GATA-GGCGCTCG-CCCGCAATATCGTATTG-AAGATA-TTTCAATTTAAAACGCAAT-ACATCTCGTTTGGCGAAC-TGGAACCTATT-TTACAAGGGA--CAGG-G--ACGGG-AGTTGTTT---GAA-T-ATTTCCT-GCT-GGATAA-CGA-GC-ATT-ACGATG--CAT-TGGTCTCTATG-CCCGGAGTGACGG--AATCGAATACTATT-GC--GATTATTGT-GATG-TT-GG--TTATAG-AAATATT-GA--AG-AGATC-CA-CCGGA--CCGTGTG-TC-CTCATCAG-A-GGC-TCA-TTT-TGTTTAGC--A-CA-CCCCTGTACCC--GACGGGACTCAGACGGATATTG---TCTCATTG-TAAAGGA-TTTTTGCA-GAAATGC-AGCTT-GTT-ACCAGAAAA--CATCTAGAACCGCTACAGC-AG--TAA-TACAA-CGGACCACGGT-GT-GCAG-TTAATGAGGGCGCTGTGACCAGTGTAAGGAAAT-GATGTCCAAACAA-TTATGTAAAACGTC-ATGCTTG-TGGAGGTTCAAATACAATGCCGC-AGTCTGTC--AAAAGTCGT-CACCATGCCTTCCTCACTGCTTGTTACAGACGAAAACCCATAACATAAGAAAGAAAAGGTACTTG-AAAATGTACATCCCTCTTACG-ATTTTG-AAT-GCAGTCAGGAAAGACGGAAGTTCACA---T-CCCCATGTTATCGTGT-GGCAGAG-ATC-TG---GTGTCA-----AC-A-TTG--CGATAGT-TTAGATTAT-CGGACA-AGCCCTG--GCTC-ATTGTCAAA--GGATAC------T------CAACGGCG---CTTGCATATTTCATA----CCGACACGTGTA-AAAACAGTTTGTTATGCGAATGGCTCTTACAGTCCGAGGACC-GACG-AGTCAAGGGCGATGTGGAAAGCGTCAAAACCAC-ATG-AAGCCACC-AGTC-ACTTGCCCACAATTTGCAAAGGATTAGA-CGAATGGgttcacaggcggtgtatcaaaccccgttatcctgattgggagtaaaatcttatccatgcaagtcttgggctgagatttatcgattcttacaactttctgccttttccctcgccaagatgcctctgctttcggcttaacggaattgaaaaaaggatattttcctcactttttcaaacacgaccgatgcaaccagcagtatgttggcgtctttacccgcccctcatttctacaatcctgatgatatgtctcgccgccaatctgtgaagcttct
gi|2 : a-G-ACTT-CCACGC-AGTT-ATA-TTGAAC-AGCGGATTGAGAGCT-TTTTTAAT-G-ATCAAG--CT-GAAACAGA---CAA--C-GGCAAACGT-GAATTAACC-CTCT--GCAGAGA-GAA-TCAACG-GCG-A-CT-ACA-TATT-T-C-AGCGG-GGCGGG--GGCAAAAAGA-----AC------TC-ATT-CGGATTATTAC-----A-AT-CAAC-TG--ACGA--GGGCGTCAA-TC-ACGGAAA--TTTAA-G-TCAAGGAAA-ATGTATACAATG-T-TTC---CATCAAG-CCATCCCGG-AGA-AAAGAA--AACA-CAAGCCT-T-C--ATTCGTCG-CC-TCTTCC---CG-G-ATATGC-TT-AAAA--TGTTG--AAACTA-GGAAATGCAG-TGCAA-CC-CAA-T-GATT-ATCT--ACGTTT-GAATATTCGGCACA-CC-GTCTCTGGCA-CTCTGAT-A-TTG-GTATG-ATTTAC-ACAG-TCAAAACAAG---CTTCAAAAACGA-GACAAAACTT-CTG-AA---CAAAATAAGAATCCGCTGC-AGC-ATCGTAA-AAAGGAATTCCTTAATCAA-CG---CCGGG-GCCGTGCAG-TTTGATTTTTTC-CATG-TGAAATTAATACC--CAAG-GCA-GCGGGCTTGCA-------CTAACA-AAAA--CAATCT-CCTG-TGGATAA-AGAAAA--TTCAAAACT--C-AAGAGAGCGAT--CGTTTCCGCA-TT-ACAACCCTGACGATTCAT-T--GTGTCTACCCGGGGCTATTGT-GTAG-CGCGTC--TACA-CAGGCCAGAAATCAAATGA-CCC--GGT-TAGGGAACG--AATGGCTAA---GAAATGCGGAAAAGGAGAT------TCA-AAACTCTCGAC-CAGAAC--CGAG-AAGCGATTAGCCTCTGATG-GAACA-AG-GTGGG-G-TG--CTATG-AATCAA-CCGTGTGG--CC-TGTGAATGGGG--AGCAATCAGA-G-TG-TGCGCTCGCCCCGCAGT-TCG--CTG-AAAATA-TTT--ATTTAAAACG-AATAACATCTCGTTT-GCG-ACTTGGAA-CTA-TCTTACAAAGGA--CAGG-GGGACGGGAACTTGTTT---GAA-T-A--TCCT-GCT-GGAT-A-CGAGGC-A-T-ACGATG-CT-T-T-GTGT-TATG-CCCGGAGTGAC-GAAAACA-AATACTATT-GC--GATTATTGC-GATG-TT-GGGCTAACAG-TCACATT-GA--AGAA---T-CA-TCAGACGCCGTGTG-TCTCT-ATC-G-A-TGCTTCGTTTT-TGTTTAGCCGA-CACCCCCTGTAACCCGGACGGAACTCAGACGA--ATTGCCTCCTCATTTGTAAAGGACTTTTT-CA-GAAATGC-AGCTT-GTT-AC----AGA--CATTT-AAAACCCTACAGCAAG--TAATTACAACC-GACCACGGT-GT--CAG-TTAATG-GGGCGCTGTGACC-GTGTAA-GAAATGGATG----AGCACTTTAT-TAAAACGCCAATGCTTGCTGGAGG--CAAAC-TAATGCCG----TCTGTCAAAAAAGTCGTCCACCATGCC-TCCTCACTGCTTTGTACAG-CG-AAACCCA-AACCTAAAGAAGAAAAGG-ACTTTGAACATGTACAT--TTTTTACGCATTTTGCCATGGCAGTCAGGAAA-AC-GGAATTCACAATTT-CCCCAT-TTAT-GC-T-GGCAAAG-AACGTGTTGGTGTTC-----AC-A-TTG--CGACAGTCCTGGA-TAT-C-GACA-AGCCT---TCCTC-ATTGTC-AA--GGAT--------T------CAACGGCG---CTT-T-CATTTCA-AGGACCCGACACGT-TAAAAAACAG----TTATG-GAATGGCTCTTACAGTTCCC-GGCCCGACGAG--CAA-GGCTATGTG--A--T-TC-AA--CACG-TG-AAGCCACCGA-TCAA-TTGCCCACAATTT-C-AAAGAT---ATCG-AAGGACAGTTTAT-TTTGAATTACCTG
gi|16 : CTGAT-ATTTG-GTACGAATTTAC-GCAG-TCAAAgttcacacggcctgtatcaaactccgtcatcctcaacggcagtaaaatccttatccagaagtcttggggttgagattcatgcgattcttacaacttctctgccttttgctctcggccaagatgccctctgctttcggattaacggaattgaaaaaagatattagtcctcacttttcaacacgaccggagaaccagcagtattgggtccttaccccgcgctcatcttctacaatcctgacgattgtcgagaccaatcgtggaagccttcta
gi|9 : A--C-ATCTGCATG-TGAATAA-GGAAAAATTCAAAAACT-GC-AAGAGGGCGAT--CGTT--CGCA-TTCAAAATCCTGAGGATTCTC-T--CTGCTTGCCCCAGGCTATTGTTGTAG-CGCGTC--TACA-CA-GCCAGAAATCAAACGA-CCCG-GCA-TGGGAAACGA-AATGGAAAC---G-GATGAGG-CTTGGGGAT------ACACAGGCTTTCGAT-CAGAAA--CGAC-AAGCGA-TAGCGC-TGATT-GAACA-AGCTGAGT-G-TC--CTATG-AACTAA-CCGTGTGGGCAA-CGTGAAT-GGG--GGAAATTACA-G-CA-GGCGCTTC-CCCGCAATATCG-ATTG-AAAATA-TTTTAATTCAAAACG-AAT-ACAGCTCCTTT-GCG-AT-TGGAACCTA-T-TTACAAAGGA--CAGG-GT-ACGGG-ACTTGTTT---GAA-T-A--TCCT-GCT-TGATAA-CGA-GC-ATT-ACGATA-CCAT-T-GTGTCTACG-CCCGGAGTGACGGAAAATC-AACACTATT-GC--GATTATTCC-GATG-T
gi|11 : CGATTCAT-T--GTGTCTACCACGGGCTATTGTGGTAG-CGCGTC--TACA-CA-CCTCGAAATCAAATGA-CCTG-GCA-TGGGAAACGA-AATGGAAAC---G-GATGAGG-CTTGGGGAT------ACACAGGCTCTCGAC-CAGAAA--CGAC-AAGCGG-AAGCCT-TGATG-GAACA-AGCTGAGT-G-TG--CTATG-AATCAA-CCGTGTG---------GAAT-GGG--GGCAATTACA-G-CA-GGCGCTCGCCCCGCAGTATCG-ATTG-AAAATA-TTTCAATTCAAAACG-AAT-ACATCTCGTTT-GCG-AC-TGGAACCTA-T-TTTCAAAG
gi|6 : TTGTTGTAG-CGCGTC--TACA-CA-CCCAGAAATCAAATGA-CCC--GGAATGGGAAAAGA-AATGGTTAC---G-CATGATA-AAGGGAGATTTCAAAACAC------TCGAT-CAGAAA--CGAG-AAGCGA-TAGCAT-TGATG-GAACA-AGCTGGGT-G-TG--CTATT-AACCAA-CCGTGCGGGCCA-CGTGAAT-GGG--AGCAATTACA-A-CA-GGCGCTTGTCCCGCAATATCG-CTTG-AAAATA-TTTCAGTTCAAAACG-AAT-ATATCTCGTTT-GTG-AC-TGGAAGCTA-T-TTACAAAGGA--CAGG-G-ATCGGG-ACTTGTTT---G-AAT-A--TCCT-GCT-GGATAAACGA-GC-ATT-ACGATG-C-AT-T-GTCTCTATG-GCCGGAGTGACGGAAAATC-AATACTATT-GC--GATTATTGC-GATGGTT-GG--CTACAGTCA-CATT-GAGAAG-A---A-CATCCGGA--CCGT-TG-CT-CTCATC-G-ACTGC-TCG-TTT--GTTTAGCCGAACACCCCCTGTACCCCGGACGGGACTCAGACGA--ATTGC--TCTCATTGT-AAAGGA-TTTTT-CA-GAAATGC-AGC-TTGTT-ACCA---GAACCATTTAAAA-CCCTACAGC-AG--TAA-TACAA-C-GACCACGGTG-T-GCAGTTTA----GGGCGCTGTGACGAGTGTCA-GAAATGGATGACCAAGAAA-TTAT-TAAAAGGAC-ACGCGTG-TGAAGG-TTAAACACAATGCCGC-A-TCTGTC-AAAAAGTCGT-CCCCATGCC-CCATCGCTGCTTTGTACAGATG-AAACCCA-AACCCAAGAAAGAAAAGG-ACTTGAAAA-TGTACAT--TTATTACG-ATTTTT-AAA-GCAGTCAAGAAA-AC-GGCATACACAC--T-CCAAAT-CTAT-GCGT-GGC--AG-ATCGTGT--GTGTCA-----AC-A-TTG--CGACAGT-TTGGA-TAT-C-GACACCCCCCTG-TCCTC-ATTGTA-TA--GGAT--------T------CAACTGTG---CTT-TATATTTCA-AGGACCCGACACAT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGTCCGA-GACC-GACGAG--CAA-GGCTATGTGGAA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCACACAATTT-CAAAGGAT---A-CG-ATGGACAGTTTAT-TTTGAATTACCTG
gi|7 : ggCG-ATTG-AAAATA-TTTCAGTTCAAAACG-AAA-ACATCTCATT--AAG-AC-TGGAACCTA-T-TTACAAAAGA--CAGG-GGA-CGGG-ACTTACTT---A-AAT-A--TCCT-GCA-GGATAA-TGA-GC-ATT-ACGATA-GCAT-T-GTCTCTATG-ACCGGAGTGACAGAAAATC-AATACTATT-GC--GAT----------A-TT-GG--CTATAGAAA-TATT-AA--AG-A---T-CA-CCGGA--CTGTCTG-TT-TTCATC-G-A-TGC-TCG-TTT-TGTTTAGCCGA-TACCCCCTGTACCCCGGACGGGACTCAAACGG--ATTGC--CTGCATTGT-AAGGGA-TTTTT-TA-GAAATGC-GGC-TTGCT-ACCA---GAACCATTTCCAA-CCCCACAGC-AG--TAG-TACAA-C-CACCACGGTA-T-GCAGTTTAAGG-GGTCGCTGCGACGAGTGCCA-GAAATGGATGCCCAAGCAA-TTAT-TACGAGGCC-ACGCTTG-TGGAGG-TCAAACACAGTGCCAC-A-TCTGTC-AAAAAGTCGT-CGCCATGCC-CCATCACTGCTTTGTACAGATG--AACCCA-AACCTAAAAAGGAAAAGG-ACTTG-AAAATGTAAAT--TTATTACG-ATTTCG-AAT-CCAGCCAGGAAA-AC-GGAATTCACA---TCCCCAAT-TTAT-GCGT-GGC--AG-ATCGTGT--GTGTCA-----AT-A-TTG--TGACAGT-TTGGA-TAT-C-GAAA-AGCCCCG-TCCTC-ATTGTA-TA--GGAT-T------TGGATCGCAACGGCG---CTT-CCTATTTCA-AGGACTCGACACGT-T--AAAACACT---TTATG-GAATGGCTCTTACAGTCAGA-GACCGACCA-G--AAA-GGCTATGTGGGA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCACACAATTT-CAAAGGAT---A-CG-ATGGGCAGTTTAT-TTTGAATTACCTGgttcacacggcttgtatcaaacccaccgtcatcctgaacggcagtaaaatcttatccatgcaaatcttggggttgtgattcatcgattcttacaactttctgccctttgccctcgctaagatgccatctgcttccggattaaccgagctgaaaaaagggtatttccctcactttttcaacacgacagagaaccagtattacgtgggtccttaccccgccgctcatttctacaatcctgacgatatgtccactgccaatcgtgaagctttcta
gi|15 : TGACCAGTGTAG-GAAATGGATGTCCAAGgttcacacagcttgtatcaaacctaccgtcatcgtcaacggcagtgaaatcttatccatgcaagttttggggttgggattcatcgattctcataactttctgccctttgccctagctaagatgccctctgttttcggattaaacgagctgaaaaaaggatatttccctcactttttcaacacgacagaaaaccagcattacgtgggtccttaccacgccc
gi|10 : AGACAGGGAA-ACGGAATTTCACA---C-CCCAAT-TCGTAGCGTAGGC--AG-ATCG-GT--GTGTCAGATCGACTC-TTGATCGACAAA-CTTTACTATTC-GACA-A--CCTGCTCTTC-ATTGTA-TA--GGAT-T------TGGATCGCAACGCCG---CTT-CGTATTTCA-AGGAACAGACACGT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGTCCGA-GGGC-GACGAG--AAA-AGCTATGTGGAA--C-TCAAA--CACGATG-AAGCCAGC-A-TC-A-TTGCACACAATTT-CAAAGGAT---G-CG-ATGGGCAGTTTATTTTTAAATTACCTGcactt
gi|13 : GTGT--GTGTCA-----AC-A-TTG--CGACAGT-TTGGA-TAA-C-GACA-AGTACTG-TCCTC-ATTGTA-TA--GGAT-TTGGATGT------CAACGGCG---CTT-CATATTTCA-AGGACCCgttcgcacggcttgtatcaaacccaccgtcatcttcaacggcagtaaaatcttattcatgcaagtcttgcgtgtttgagattcgtcgattcttacaattttctgtccttggccctcgcc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): CAGAGAACCAGCAGTATGTGGGTCCTTACCGAGCCGCTCATTTCTAC
Alignments
lowQualScore : 5555555555555 22 5555555 11 111 1 111 111111 111 22 111 11 1111 1 1111 1 222222 111 111 2222222 1111 1111 111 11 11 11 1 1 1 1 111 1 11111 2 111 111 1 11 11111 1 11 3333333333333333 11 111 111
lowQualScore : 8 6666666666666 44 2222222 6 0 6 99 6 6 888 55 6 6 6 5 5 5 5 5 5 77 5 5 5 5 77 5 5 000 77 5 5 5 777 5 77 5 5 5 5 6 6 3 6 6 6 5 111 999999 6 888 99 6 99 6 6 22 6 6 111 6 6 6 6 55 6 6 6 6 99 6 6 4444 6 6 999 6 1 6 6 6 9 6 6 6 6 99 6 0000 6 6 5 5 5 5 5 3 111111 6 6 6 111 6 6 6 6 6 6 6 3 111 1 6 6 3333333 5 6 6 44 4444 4444 6 111 77 5 3 5 2 5 5 77 99 5 4 00 66 1 5 4 8 22 4 4 3 0 0 5 44 66 1 5 3 777 5 5 2 1 0 5 66 0 5 5 5 5 5 2 666 66 5 0 2 77 5 5 5 0 5 0 5 4 4 4 8 4 4 4 4 4 4 66 5 111 5 5 66 5 66 5 5 0 5 5 5 5 00 5 5 1 5 3 5 5 66 5 5 5 77 5 5 77 88888 5 77 4 5 5 5 5 999 5 0 0 77 77 5 5 5 5 5 1 5 5 000 5 5 5 5 77 5 5 5 5 77 5 6 5 3 5 6 6 0 6 6 888 6 6 6 6 6 6 6 6 99 6 6 6 5 5 5 5 555 5 5 0 1 5 55 5 66 22222 5 5 66 5 0 5 5 5 1 5 5 11 1 9999999999999999 888 5 2 5 2 5 33 000 5 77 5 5 5 5 5 1 77 5 77 5 5 5 5 5 1 5 5 000 5 5 6
lowQualScore : . ............. .. ....... . . . .. . . ... .. . . . . . . . . . .. . . . . .. . . ... .. . . . ... . .. . . . . . . . . . . . ... ...... . ... .. . .. . . .. . . ... . . . . .. . . . . .. . . .... . . ... . . . . . . . . . . .. . .... . . . . . . . . ...... . . . ... . . . . . . . . ... . . . ....... . . . .. .... .... . ... .. . . . . . . .. .. . . .. .. . . . . .. . . . . . . .. .. . . . ... . . . . . . .. . . . . . . . ... .. . . . .. . . . . . . . . . . . . . . . . . .. . ... . . .. . .. . . . . . . . .. . . . . . . . .. . . . .. . . .. ..... . .. . . . . . ... . . . .. .. . . . . . . . . ... . . . . .. . . . . .. . . . . . . . . . . ... . . . . . . . . .. . . . . . . . ... . . . . . .. . .. ..... . . .. . . . . . . . . .. . ................ ... . . . . . .. ... . .. . . . . . . .. . .. . . . . . . . . ... . . .
lowQualScore : 0 8888888888888 33 8888888 7 7 7 22 7 7 333 88 7 7 7 7 7 7 7 7 7 99 7 7 7 7 99 7 7 000 99 7 7 7 000 7 99 7 7 7 7 7 7 7 7 7 7 0 777 222222 7 333 22 7 22 7 7 22 7 7 777 3 7 7 7 88 7 7 7 7 22 7 7 2222 7 7 222 7 3 7 7 7 3 7 7 7 7 22 7 0000 7 7 7 7 7 7 7 3 888888 7 7 7 777 7 7 7 7 7 7 7 2 777 0 7 7 0000000 7 7 7 22 2222 2222 7 777 99 7 6 7 3 7 7 99 33 7 3 11 99 4 3 4 9 22 4 4 9 1 2 0 66 99 0 0 0 999 0 0 5 4 2 0 99 0 0 0 0 0 0 5 222 99 0 0 5 88 0 0 0 0 0 0 0 4 4 4 9 4 4 4 4 4 4 99 0 000 0 0 99 0 99 0 0 0 0 0 0 0 66 0 0 4 0 2 0 0 99 0 0 7 99 7 7 99 33333 7 99 3 7 7 7 7 444 7 7 7 99 99 7 7 7 7 7 1 0 7 000 7 7 7 7 99 7 7 7 7 99 0 7 7 9 7 7 7 7 7 7 333 7 7 7 7 7 7 7 7 22 7 7 7 7 7 7 7 777 7 7 1 4 7 77 7 99 55555 0 0 99 0 0 0 0 0 4 0 0 99 0 0000000000000000 888 0 0 0 5 7 66 000 7 99 7 7 7 7 7 3 99 7 99 7 7 7 7 7 0 0 7 000 7 7 7
consensus : GCGGAAG-TTTA----GC-----GATGAGGT-CTACAGTA-----GTATATAAAGCGGGGCGCGGT-GCATTG-GCAGTCACTTT-CGACA-TCATG-T-CAGA--CA-AGTTA-CCT-AGTGGACTT-CCACGC-AGTT-ATA-TTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-GA-TCA-G--CT-GAA-CAGAC---AA--C-GGCAG-CGT-GAATTACAAC-TCC--GCAGAGA-GAA-TCAACG-GCG-AC-T-ACAGTATT-TACA-GCGG-GGAGGGG-GAAAAAA---GAAAC------TCA-TTTCGGATTATTAC---AAAAT--TCAAC-TGGAACGAG--GGCGTCAAT-C-ACGGAAAA-TTTAAAGT-CAAGGAAA-ATGTCTACAATG---TTGCCATCAAGCCTATCCCGGA-GA-AA-GAA--AACA-CA-GCCT-T-CA--TTCGTCG-CC-TCTTCC---GG-GA-TATGC-TNAAAAATGTGAAAAC-A-GGAAATGCAG-TGCAACCCCAA-TG-A-TT-ATCT--ACGTTT-GAATATTCGGCA-C--C-GTCTCTGG-ACT-CTGAT-ATTTG-GTATGAATTTAC-GCAG-TCAAAACA-GCT-N----AACGAGGACAAAA-TT-CTG-AA---CAAAATA-GAA-TCCG-TGCA-GCAATC-TAA-AAAGGAATTCCT-AATCACAG---ACGGGGCCGTGCAGTTT-GATTTTTTC-CATGTGAAA---ATACCCACAAG-GCAG-CGGAGG---GAGAT----CTA-A---AAA--CA-TCTGCATGTGGATAA-AGAGAAATTTCAAAACT-CC-AAGAGAGCGAT--CGTT--CGCA-TTCAAAATCCTGACGATTCAT-T--GTGTCTACCCCGGGCTATTGTGG-TAG-CGCGTC--TACA-CAG-CCAGAAATCAAATGACCCGGCATGGGAAACGA-AATGGNTAA--GAA-TGNGGNANGGG-GATA-CACAGACTCTCGAC-CAGAAA--CGAC-AAGCGA-T-AGCCT-TGATG-GAACA-AGCNGGGT-G-TG--CTATG-AACCAA-CCGTGTGGGCC-NCGTGAATGGGG-G-CAATTACA-G-CA-GGCGCTCG-CCC-GCAATATCG-ATTG-AAAATA-TTTCAATTCAAAACG-AATA-CATCTCGTTT-GCG-ACT-GGAACCTA-T-TTACAAAGGA--CAGG-GGAACGGGA-CTTG-TTT--GAAT-A--TCCT-GCT-GGATAA-CGAG-C-ATT-ACGATG-CCAT-T-GTCTCTATGC-CCGGAGTGACGGAAAATC-AATACTATT-GC--GATTATTGC-GATG-TT-GG--TTATAG-AAATATT-GA--AGA---T-CA-CCGGAC--CGTGTGTCCTCATC-G-A-TGCT-CGTTT-T-GTTTAGCCGA-CACCCCCTGTACCCCGGACGGGACTCAGACGA--ATTGC--CCTCA-TTG-TAAAGGA-TTTTT-C-AGAAATGCGGC-TTGTT-ACC---AG-AACCATTT-AAAACC-CTACAGC-AG--TAA-TACAA-C-GACCACGGT-G--TGCAGTTTAATG-GGGCGCTGTGACCAGTGTAA-GAAATGGATGTCCAAGCAA-TTAT-TAAAACGCC-ACGCTTG-TGGAGG-TCAAACACAATGCCGC-A-TCTGTC-AAAAAGTCGT-CACCATGCC-TCATCACTGCTTTGTACAGACG-AAACCCA-AACCTAAGAAAGAAAAGG-AC-TTG-AAAATGTACAT--TTATTACG-ATTTTG-AAT-GCAGTCAGGAAA-AC-GGAA-TT-CACA---T-CCCAAT-TTAT-GCGT-GGC--AG-ATCGTGT--GTGTCA-----AC-A-TTG--CGACAGT-CTGGA-TAT-C-GACA-AGCCCTG-TCCTC-ATTGT--ANAGGAT-T------T------CAACGGCG---CTT-CATATTTCA-AGGACCCGACACGT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGT--CCGA-GACC-GACGA-G-CAA-GGCTATGTGGAA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCCCACAATTT-CAAAGGAT---A-CG-ATGGGCAGTTTA-TTTTGAATTACCTG
Reference ( family-4236 ) : GCGGAAG-TTTA----G------AATGAGGTGCTACAGTAAAA--GTATATAAAGCGGGGCGCGGT-GCATTG-GCAGTCACTTT-CGACA-TCATG-T-CAGA--CA-AGTTA-CCT-AGTGGACTT-CCACGC-AGTT-ATA-TTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-GA-TCA-G--CT-GAA-CAGAC---AA--C-GGCAG-CGT-GAATTACAAC-TCC--GCAGAGA-GAA-TCAACG-GCG-AC-T-ACAGTATT-TACA-GCGG-GGAGGGGCGAAAAAA---GAAAC------TCA-TTTCGGATTATTAC---AAAAT--TCAAC-TGGAACGAG--GGCGTCAAT-C-ACGGAAAA-TTTAAAGT-CAAGGAAA-ATGTCTACAATG---TTGCCATCAAGCCCATCCCGGA-GA-AA-GAA--AACA-CA-GCCT-T-CA--TTCGTCG-CC-TCTTCC---GG-GA-TATGC-TNAAAAATGTGAAAAC-A-GGAAATGCAG-TGCAACCCCAA-TG-A-TT-ATCT--ACGTTT-GAATATTCGGCA-C--C-GTCTCTGG-ACT-CTGAT-ATTTG-GTATGAATTTAC-GCAG-TCAAAACA-GCT-N----AACGAGGACAAAA-TT-CTG-AA---CAAAATA-GAA-TCCG-TGCA-GCAATC-TAA-AAAGGAATTCCT-AATCACAG---ACGGGGCCGTGCAGTTT-GATTTTTTC-CATGTGGAA---ATACCCACAAG-GCAG-CGGAGG---GAGAT----CTA-A---AAA--CA-TCTGCATGTGGATAA-AGAGAAATTTCAAAACT-CC-AAGAGAGCGAT--CGTT--CGCA-TTCAAAATCCTGACGATTCAT-T--GTGTCTACCCCGGGCTATTGTNG-TAG-CGCGTC--TACA-CAG-CCAGAAATCAAATGACCCGGCATGGGAAACGA-AATGGNTAA--GNA-TGAGGNNNGGG-GATA-CACAGGCTCTCGAC-CAGAAA--CGAC-AAGCGA-T-AGCCT-TGATG-GAACA-AGCGGGGT-G-TG--CTATG-AACCAA-CCGTGTGGGCC-NCGTGAATGGGG-G-CAATTACA-G-CA-GGCGCTCG-CCC-GCAATATCG-ATTG-AAAATA-TTTCAATTCAAAACG-AATA-CATCTCGTTT-GCG-ACT-GGAACCTA-T-TTACAAAGGA--CAGG-GGAACGGGA-CTTG-TTT--GAAT-A--TCCT-GCT-GGATAA-CGAG-C-ATT-ACGATG-CCAT-T-GTCTCTATGC-CCGGAGTGACGGAAAATC-AATACTATT-GC--GATTATTGC-GATG-TT-GG--TTATAG-AAATATT-GA--AGA---T-CA-CCGGAC--CGTGTGTCCTCATC-G-A-TGCT-CGTTT-T-GTTTAGCCGA-CACCCCCTGTACCCCGGACGGGACTCAGACGA--ATTGC--CCTCA-TTG-TAAAGGA-TTTTT-C-AGAAATGCAGCTTTGTT-ACC---AG-AACCATTT-AAAACC-CTACAGC-AG--TAA-TACAA-C-GACCACGGT-G--TGCAGTTTAATG-GGGCGCTGTGACCAGTGTAA-GAAATGGATGTCCAAGCAA-TTAT-TAAAACGCC-ACGCTTG-TGGAGG-TCAAACACAATGCCGC-A-TCTGTC-AAAAAGTCGT-CACCATGCC-TCATCACTGCTTTGTACAGACG-AAACCCA-AACCTAAAAAAGAAAAGG-AC-TTG-AAAATGTACAT--TTATTACG-ATTTTG-AAT-GCAGTCAGGAAA-AC-GGAA-TT-CACA---T-CCCAAT-TTAT-GCGT-GGC--AG-ATCGTGT--GTGTCA-----AC-A-TTG--CGACAGT-CTGGA-TAT-C-GACA-AGCCCTG-TCCTC-ATTGT--ANAGGAT-T------T------CAACGGCG---CTT-CATATTTCA-AGGACCCGACACGT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGT--CCGA-GACC-GACGA-G-CAA-GGCTATGTGGAA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCNCACAATTT-CAAAGGAT---A-CG-ATGGGCAGTTTA-TTTTGAATTACCTG
gi|1 : GAAGATTTA----G------G-TGAGGT-CTACGGTA------T-TATAA-GCGGGGCGCAGT-GCATTG-GCAGTCACTTT-CGACA-TCATG-T-CAGA--CA-AGTTAACCT-AGTGGACTT-CCACGC-AGTT-ATA-T-GAAC-AGCG-ATGAAGA--T-TTTTGAATTGA-TCA-G--CT-GAA-CAGAC---AA--CCGGCAG-CGT-GAATTACAAC-TCC--GCAGAGA-GAA-TCAACG-GCG-AC-T-ACAGTATT-TACA-GCGG-GGAGGGGGGAAAAAA-----AAC------TCA-TTTCGGAT-ATTA----AAAAT--TCAAC-TGGAACGAG--GGCGTCAAT-C-ACGGAAAAGTTTAAATT-CAAGGAAA--TGTCTACAATG---TTGCCATCAAACCTATCCCGGA-GA-AA-GAA--AACA-CA-GCCT-T-CA--TTCGTCG-CC-TCTTC----GG-GA-TATGC-TGAAAAATGTGAAA-C-A-GGAAATGCAG-TGCAACTCCAA-TG-A-T--ATCT--ACGTTT-GATTATTCGGC-----C-GTCTCTGG-ATT-CTGATTATTTG-GTATGAATTTAC-GC-G-TCAAAACT-GCT-G----AAC-AGGACAAAA-TT-CTG-AA---CAAAATA-GA--TTCG-TGCA-GCAATC-TAA-AAAGAGATTTTT-GATC-CAGGAGACGGGA--GTGCAGTTT-GATTTTT-C-CAAGTG-AA---ATATCCACAAG-GCAG-CGGGGGAAAGAGA-------A-A---AAA--CA-TCTGCATGTGGATAA-AGAGAAATC-CAAGACTTCC-AAGAGAGCGAT--CGTTT-CGCAATCCAAAATCCT-ACGATTCAT-T--GTGTCTACCC--GGCTATTGTGG-TAGTCGCGTC--TACAGCAC-CCAGAAATCAAA-GATCCCGCATGGGAATCAATAATGGTTAA--GAA-TGCGGAA-GGA-GATA-CACAGAGTGTTGACACAGAAA--CAAC-AAGCGA-T-AGCGC-TGATA-GAACA-AGCGGGGTTG-TG--CTATG-AACCAA-CCGTGTGGGCC-TCGTGAATGGGG-A-CAATTACA-GGCAAGGCGCTCG-TCC-CTAATATAG-AT-G-AAGATAATTTCAATTTAAAACG-AATA-CATCTCGTTT-GCG-ACT-GGAAACTA-T-TTACAAGGAA--TGGG-GGACGGGGA-CTTG-TTTTGAAAT-A--TCCTTGCT-GGATAA-CGAG-C-ATT-ACGATG-CTTTGT-GTCTCTATGC-CTGGAGTGACGGAAAATC-AATACTATT-GC--GATTATTGC-GATG-TTTGG--TTATAG-AAATATTTGA--AGA---T-CA-CCGGAC--CGTGTGTCCTCATC-G-A-TGCT-CGTTT-T-GTTTAGCCGA-C--CCCCTGTACC--GGACGGGGCTCAGACGA--ATTGC--CTCTA-TTG-TAAAGGA-TTTTT-CAAGAAATGCAGC-TTGTT-ATC---AG-AACCATTT-AAAACC-CTACAAC-AG--TAA-TACAA-C-GACCACGGT-G--TGCAGTTTAATG-GGGCGCTGTGACCAGTGTAA-GAAATGGATGTCCAAACAA-T--T-TAAAACGCC-ATGCTTG-TGGAGG-TCAAACACAATG-CGCAA-TCTGTC-AAAAAGTCGT-CACCATGCC-TCATCACTGCTTTGTA-AGACG-AAACCCA-AACCTAAAGAAACAAAGG-AC-TTG-AAAATGTACAT--TTATTACG-A-TTTG-AAT-GCAGTCAGGAAA-AC-GGAA-TT-CACA---T-CCCAAT-T--T-GCGT-GGC--AGAAACGTGT--GTGTCA-----AC-ATTTG--CGACAGT-CTGGA-TAT-C-GACA-AGCCCTG-TCCTCAATTGTCAAAGGGAT-C------T------CAACGGCACGTCTT-CATATTTCA-GGGA-CTGCAACGT-T--AAAACAGT---TTATG-AATTG--TCTTACAGT--CCGA-GACC---CGACG-CAA-GGCGATGTGGAA--C-TCAAC--GACGATGCAAGCCACC-A-TC-A--TGCCCAC-ATTT-CAAAGGAT---A-CG-ATGGGCAGTTTA-TTTTGAATTACCTG
gi|10 : AGACAGGGAA-AC-GGAA-TTTCACA---C-CCCAAT-TCGTAGCGTAGGC--AG-ATCG-GT--GTGTCAGATCGACTC-TTGATCGACAAA-CTTTACTATTC-GACA-A--CCTGCTCTTC-ATTGT--ATAGGAT-T------TGGATCGCAACGCCG---CTT-CGTATTTCA-AGGAACAGACACGT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGT--CCGA-GGGC-GACGA-G-AAA-AGCTATGTGGAA--C-TCAAA--CACGATG-AAGCCAGC-A-TC-A-TTGCACACAATTT-CAAAGGAT---G-CG-ATGGGCAGTTTATTTTTAAATTACCTGgttcacaggcggtgtatcaaaccccgttatcctgattgggagtaaaatcttatccatgcaagtcttgggctgagatttatcgattcttacaactttctgccttttccctcgccaagatgcctctgctttcggcttaacggaattgaaaaaaggatattttcctcactttttcaaacacgaccgatgcaaccagcagtatgttggcgtctttacccgcccctcatttctacaatcctgatgatatgtctcgccgccaatctgtgaagcttct
gi|11 : CGATTCAT-T--GTGTCTACCACGGGCTATTGTGG-TAG-CGCGTC--TACA-CAC-CTCGAAATCAAATGACCTGGCATGGGAAACGA-AATGGAAAC--GGA-TGAGGCTTGGG-GATA-CACAGGCTCTCGAC-CAGAAA--CGAC-AAGCGG-A-AGCCT-TGATG-GAACA-AGCTGAGT-G-TG--CTATG-AATCAA-CCGTGTG---------GAATGGGG-G-CAATTACA-G-CA-GGCGCTCGCCCC-GCAGTATCG-ATTG-AAAATA-TTTCAATTCAAAACG-AATA-CATCTCGTTT-GCG-ACT-GGAACCTA-T-TTTCAAAGgttcgcacggcttgtatcaaacccaccgtcatcttcaacggcagtaaaatcttattcatgcaagtcttgcgtgtttgagattcgtcgattcttacaattttctgtccttggccctcgcc
gi|12 : GCGGAAA-TTTACAGTGT-----AATGAGGT--TATAGTAAAA--GTATATAAAGCGGTGCGTGGT-GCATTT-GCAGTCACTTT-CGACA-TCATG-T-CAGA--CA-AGTTA-CCT-AGTGGACTT-CCACGC-AGTT-ATA-CTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-GA-TCA-G--CT-GAA-CAGAC---AA--C-GGGAG-CGT-GAATTAC---------------A-GAA-TCAACG-GTG-
gi|13 : tGTGT--GTGTCA-----AC-A-TTG--CGACAGT-TTGGA-TAA-C-GACA-AGTACTG-TCCTC-ATTGT--ATAGGAT-TTGGATGT------CAACGGCG---CTT-CATATTTCA-AGGACCC
gi|15 : TGACCAGTGTAG-GAAATGGATGTCCAAGCAC-TT
gi|16 : -CTGAT-ATTTG-GTACGAATTTAC-GCAG-TCAAA
gi|2 : GACTT-CCACGC-AGTT-ATA-TTGAAC-AGCGGATTGAGAGCT-TTTTTAAT-GA-TCAAG--CT-GAAACAGAC---AA--C-GGCAAACGT-GAATTAACCC-TCT--GCAGAGA-GAA-TCAACG-GCG-AC-T-ACA-TATT-T-CA-GCGG-GGCGGGG-GCAAAAA---GAA-C------TCA-TT-CGGATTATTAC---AA-----TCAAC-TG--ACGAG--GGCGTCAAT-C-ACGGAAA--TTTAA-GT-CAAGGAAA-ATGTATACAATG---TTTCCATCAAGCC-ATCCCGGA-GA-AAAGAA--AACA-CAAGCCT-T-CA--TTCGTCG-CC-TCTTCC---CG-GA-TATGC-TTAAAA-TGTTGAAACTA-GGAAATGCAG-TGCAACCC-AA-TG-A-TT-ATCT--ACGTTT-GAATATTCGGCA-CACC-GTCTCTGGCACT-CTGAT-ATT-G-GTATGA-TTTAC-ACAG-TCAAAACAAGCT-TCAAAAACGAG-ACAAAACTT-CTG-AA---CAAAATAAGAA-TCCGCTGCA-GCA-TCGTAA-AAAGGAATTCCTTAATCAACG---CCGGGGCCGTGCAGTTT-GATTTTTTC-CATGTGAAATTAATACCCA--AG-GCAG-CGG--------GCTTGCACTA-ACAAAAA--CAATCTCC-TGTGGATAA-AGAAAA--TTCAAAACT-C--AAGAGAGCGAT--CGTTTCCGCA-TT-ACAACCCTGACGATTCAT-T--GTGTCTACCCGGGGCTATTGT-G-TAG-CGCGTC--TACA-CAGGCCAGAAATCAAATGACCCGGT-TAGGGAACGA-A-TGGCTAA--GAAATGCGGAAAAGGAGATT-CA-AAACTCTCGAC-CAGAAC--CGAG-AAGCGA-TTAGCCTCTGATG-GAACA-AGGTGGG--G-TG--CTATG-AATCAA-CCGTGTGG--C-CTGTGAATGGGGAG-CAATCAGA-G-TG-TGCGCTCG-CCCCGCAGT-TCG--CTG-AAAATA-TTT--ATTTAAAACG-AATAACATCTCGTTT-GCG-ACTTGGAAC-TA-TCTTACAAAGGA--CAGG-GGGACGGGAACTTG-TTT--GAAT-A--TCCT-GCT-GGATA--CGAGGC-AT--ACGATG-CT-T-T-GTGT-TATGC-CCGGAGTGACG-AAAACA-AATACTATT-GC--GATTATTGC-GATG-TT-GGGCTAACAG-TCACATT-GA--AGAA--T-CA-TCAGACGCCGTGTGTCTCTATC-G-A-TGCTTCGTTT-TTGTTTAGCCGA-CACCCCCTGTAACCCGGACGGAACTCAGACGA--ATTGCCTCCTCATTTG-TAAAGGACTTTTT-C-AGAAATGCAGC-TTGTT-A-C---AG-A--CATTT-AAAACC-CTACAGCAAG--TAATTACAACC-GACCACGGT-G--T-CAG-TTAATG-GGGCGCTGTGACC-GTGTAA-GAAATGGATG----AGCACTTTAT-TAAAACGCCAATGCTTGCTGGAGG--CAAAC-TAATGCCG----TCTGTCAAAAAAGTCGTCCACCATGCC-TCCTCACTGCTTTGTACAG-CG-AAACCCA-AACCTAAAGAAGAAAAGG-ACTTTG-AACATGTACAT--TTTTTACGCATTTTGCCATGGCAGTCAGGAAA-AC-GGAA-TT-CACAATTT-CCCCAT-TTAT-GC-T-GGCAAAG-AACGTGTTGGTGTTC-----AC-A-TTG--CGACAGTCCTGGA-TAT-C-GACA-AGCCT---TCCTC-ATTGT--CAAGGA--T------T------CAACGGCG---CTT-T-CATTTCA-AGGACCCGACACGT-TAAAAAACAG----TTATG-GAATGGCTCTTACAGTTCCCG--GCCC-GACGA-G-CAA-GGCTATGTG--A--T-TC-AA--CACG-TG-AAGCCACCGA-TCAA-TTGCCCACAATTT-CAAA-GAT---ATCG-AAGGACAGTTTA-TTTTGAATTACCTG
gi|3 : TGAGGTGTTACAG-------GTA-ATAAAGCGGG-CGCAGG-CCATTG-GCACTCACTTT-CGACAATCATG-TTCAGA--CA-AGGTA-CCTGAGTGGACT--CCACGC-AGT--ATAGTTGAACCAGCG-ATTGAGA--T-TTTTGACT-GA-TCA-G--CTTGAA-CAGAC---AAAAC-GGCAG-CGT-GAATTACA-C-TCC--GCAGAGATGAA-TCA-CGAGCG-AC-TGACAGTATT-TACA-GCGG-G-AGGGGCTAAAAAA---GAAAC-------CA-TTTCGGATTATTAC---AAAAT--TCAACGTGGA-CGAG--GGCGTCAAT-CCACGGAAAA-TTTAAAGT-CAAGGAAAGATGTC-ACAATGCCCTTGC-ATCAAACCCATCCGAGA-GA-AA-GAATAAATA-CA-GCCT-TTCA--TTCGTCGGCCGTCTTCCCGGGGCGA-TATGT-GAAGAAAT-TGAAAAC-A-AGAAGTGCAG-TGCAACCCCAAATG-A-TTGATCTTGACGTTT---ATATTCGG-A-C--CTGTCTCTGG-ACT-CTGAT-ATTTG-GTATGAATTTAC-GCAG-TCAAA-CA-GCT-C----AACGAGGACAAAA-TT-CTG-AA---CAAAATA-GAA-TCCG-T-CA-GCAATC-TAA-AAAGGAATTCTA-AATCACAG---ACGGGGCCGTTCAGTTT-GATTTTTTC-CATGT-GAC---ATATCCACGAA-GCAG-CGGA-G---GAGAT----CTA-A---AAAACCA-TCTGCATGTG--TAACGGAAAAATTTCAGACTT-CC-AAGAGAGCGAT--CGTT--CGCA-TGAAACAACCTGACGAGTCATGTTGGTGTCTACCCC-GGCTATTGGGGTTAG-CGCGTCTGTACA-CAG-CCGAGAATCAAATGACCCGGGCTGTGAAACAA-AATGGTTAA--GAA-TGCGGGAA-GG-AATA-CACAGAGTGT--GC-CAGAAAACCAACGAAGCGA-T-AACCT-TGATGCGAACA-AGCGGGGT---TG--CTAGG-AACCAAGCCGTGTGGG-C-TCGTGAATGGGG-ACCAATTACA-GATA-GGCGCTCG-CCC-GCAATATCGTATTG-AAGATA-TTTCAATTTAAAACGCAATA-CATCTCGTTTGGCGAACT-GGAACCTATT-TTACAAGGGA--CAGG-G--ACGGGA-GTTG-TTT--GAAT-ATTTCCT-GCT-GGATAA-CGAG-C-ATT-ACGATG--CAT-TGGTCTCTATGC-CCGGAGTGACGG--AATCGAATACTATT-GC--GATTATTGT-GATG-TT-GG--TTATAG-AAATATT-GA--AGAGATC-CA-CCGGAC--CGTGTGTCCTCATCAG-A-GGCT-CATTT-T-GTTTAGC--A-CA-CCCCTGTACCC--GACGGGACTCAGACGGATATTG---TCTCA-TTG-TAAAGGA-TTTTTGC-AGAAATGCAGC-TTGTT-ACC---AGAAAACATCT-AGAACCGCTACAGC-AG--TAA-TACAA-CGGACCACGGT-G--TGCAG-TTAATGAGGGCGCTGTGACCAGTGTAAGGAAAT-GATGTCCAAACAA-TTATGTAAAACGTC-ATGCTTG-TGGAGGTTCAAATACAATGCCGC-AGTCTGTC--AAAAGTCGT-CACCATGCCTTCCTCACTGCTTGTTACAGACGAAAACCCATAACATAAGAAAGAAAAGGTAC-TTG-AAAATGTACATCCCTCTTACG-ATTTTG-AAT-GCAGTCAGGAAAGAC-GGAAGTT-CACA---T-CCCCATGTTATCGTGT-GGCAGAG-ATC-TG---GTGTCA-----AC-A-TTG--CGATAGT-TTAGATTAT-CGGACA-AGCCCTG--GCTC-ATTGTC-AAAGGATAC------T------CAACGGCG---CTTGCATATTTCATA----CCGACACGTGTA-AAAACAGTTTGTTATGCGAATGGCTCTTACAGT--CCGAGGACC-GACGA-GTCAAGGGCGATGTGGAAAGCGTCAAAACCAC-ATG-AAGCCACC-AGTC-ACTTGCCCACAATTTGCAAAGGATTAGA-CGAATGGgttcacacggcctgtatcaaactccgtcatcctcaacggcagtaaaatccttatccagaagtcttggggttgagattcatgcgattcttacaacttctctgccttttgctctcggccaagatgccctctgctttcggattaacggaattgaaaaaagatattagtcctcacttttcaacacgaccggagaaccagcagtattgggtccttaccccgcgctcatcttctacaatcctgacgattgtcgagaccaatcgtggaagccttcta
gi|4 : atttatgtGCGGAAG-TTTA----G------G-TGAGGT-CTACAG-------GTATATAAAGCGGGGCGCAGT-GCATTG--TAGTCACTTT-CGACA-TCATG-T-CAGA--CA-AGTTA-C-T-AGTG-ACTT-CCACGC-AGTT-ATA-TTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-GA-TCA-G--CT-GAA-CAGAC---AA--C-GGCAG-CGT-GAATTACAAC-TCC--GCAGAGA-GAA-TCAACG-GCG-AC-T-ACAATATT-TACA-GCGG-GGAGGGGCAAAAAAA---GAAAC------TCA-TTTCGGATTATTACC--AAAAT--TCAAC-TGGAACGAG--GGCGTCAAT-C-ACGGAAA--TTTAAAGT-CAAGGAAA-ATGTCTACAATG---T-GCCATCAAGGCTATTCCAGA-GA-AA-GAA--AACA-CA-GCCT-T-CA--TTCGTCG-CC-TCTTCC---GG-GA-TATGC-TGAAAAATGTGAA--C-A-GGAAATGCAG-TGCAACCCCAA-TG-A-TT-ATCT--ACGTTT-GAATATTCGGCA-C--C-GTCTCTGG-ACT-CTGAT-ATTTG-GTATGAATTTAC-GCAG-TCAAAACA-GCT-G----AACGAGGACAAAA-TT-CTG-AA---CAAAATA-GAAATCCG-TGCA-GCAATC-TAA-AAAGGAATTCCT-AATCACAG---ACGGG-CCGTGCAGTTT-GATTTTTTC-CATGTCAAA---ATACCCACAAG-GCAG-CGGAGG----AGAT----CTA-A---AAA--CA-TCTGCATGTGG-TAA-AGAGAAATTTCAAAACT-CC-AAGAGAGCGAT--CGTT--CGCA-TTCAAAATCCTGACGATTCAT-T--GTGTCTACCCCGGGCTATTGTGG-TAGACGCGAC--TACA-CAG-TCAGAAATCAAATGACCC-GCATGGGAAACGA-AATGGCTAA--GAA-TGCGGAAAGGA-GATA-CACGGAGTGTTGAC-CAGAAA--CAAC-AAGCGA-T-AACCT-TGATG-GAACA-AGCGGGGT-G-TG--CTATG-AATCAA-CCGTGTGGGCC-TTGTGAATGGGC-G-CAATTACA-G-CA-GGCGCTTG-CCC-GCAGTATCG-ATTG-AAAATA-TTTCAGTTCAAAACG-AATA-CATCTCGTTT-GCG-ACT-GGAACCTA-T-TTACAAAGGA--CAGG-GGAACGGGA-CTTG-TTT--G-AT-A--TCCT-GCT-GGATAA-CGAG-C-ATT-ACGATG-CCAT-T-GTTTCTATGG-CCGGAGTGACGGAAAATC-AATACTATT-GC--GATTATTGC-GATG-TT-GG--TTATAGAAAATATT-GA--AGA---T-CA-CCGGAC--CGTGTGTCCT-ATC-G-A-TGCT-CGTTT-T-GTTTAGCCGA-TACCCCCTGTACCCCAGACGGGACTCAGACGA--ATTGC--TCGCA-TTGTTAAAGGA-TTTTT-C-AGAAATGCAGC--TGTT-ACCAAAAG-AACCATTTAAAAACC-CTACAGC-AG--TAA-TACAA-C-GACCACGGTGG--TGCAGTTTAATG-GGGCGCTGTGACCAGTGTAA-GAAATGGATGTCAAAGAAA-TTAT-TAAAACGCC-ATGCTTG-TGGAGG-TCAAATACAATGCCGC-A-TCTGTC-AAAAAGTCGT-CACCATGCC-TCATCACTGCTTTGTACAGACG-AAACCCA-AACCTAAGAAAGAAAAGG-AT-TTGAAAAATGTACAT--TTATTACG-ATTTTG-AAT-GCAGTCAGGAAA-ACGGGAA-TT-CACA---T-CCCAAT-TTAT-GTGT-GGC--AG-ATCGTGT--GTGTCA-----AC-A-TTG--TGACAGT-CTGGA-TAT-C-GACA-AACCCTG-TCCTC-ATTGT--CAAGGAT-C------T------CAACGGCG---CTT-CATATTTCA-AGGACCCGACACGT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGT--CCGA-GACCAGACG--G-CAA-GGCGATGTGGAA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCCCAC-ATTT-C-AAGGAT---A-CG-ATGGGCAGTTTA--TTTGAATTACCTG
gi|5 : GGAAG-TTTA----ACAGTGTAATGAGGT--TATAGTAAAAAGGTATATAAAGCGGG-CGCGAT-GCATTCTGTAGTCACTTT-CGACA-TCAT----TAGAA-CA-AGTTT-ACT-AGTGGACTT-C-ACGC-AGTT-ATA-TTGAAC-AGCG-ATTGAGA--TGTTTTGAAT-GAATCA-G--CT-GAA-CAGAC---AA--C-GGCAG-CGTCGAATTACAACCTCC--GCAGAGA-GAA--CAACG-G-G-ACCT-AC-GT-TT-TACAAGCGG-GGAAGGCGGCAAAAA---GAAAC------TCAATTTCGGATTATTAC---AAAATATTCAAC-TGGAACGGACAGGCGTCAAT-C----GGAAA-TTTAAAGT-CA-GGAAA-ATGTCTA-AATG---TTGCCATCAAGCCTATTCCAGAAGACAA-GAAG-AACATCA-GC-T-T-CAAATTCGTCG-CC-TCTTCC---GG-GAATATGC-T--AAAAT-TGAAA-C-A-GGAAATGCAG-TGCAAACCTAA-CGGA-TT-ATCT--ACGTTT-GAATATTCGGCA-C--C-CTCTCTGG-ATTTCTGAT-ATTTG-GTATGAATT-AC-GCAG-TCAACACA-GCT-C----AACGAGGACAGAA-TTGCTGCAA---CAAA-TA-GAA-TCCG-TGCAAGCAATC-TAA-AA-GGAAT--CT-AATCAC-G---ACGGCGCGGTGCAGTTTTGATTTTTTCACAT-TGAAA---ATACC-ACAAGAGCAGGCGGAGG---GAGAT----CTAGA---AAA--CA-TCTGCATGCTGGTAA-AGTGAAAATTCAAGACT-CC-AAGAGAGCGAT--CGTT--CGCA-TTAACAACCCTAACGATTCA--T--GTGTCT--CCCGGGCTATTGTTG-TAG-C-CGTC---ACA-AAG--CAGAAATC-AATGACCC-GCATGGGAAAC-A-AATGGA-AACGGCA-TGAGGCTTGGG-GATA-CACAGGCTCTCGAC-AGAAAA--CGACAAAGCGAGT-AGCCT-TGATT-GAACAGGGAGGGGT-GCTGGTCTATGAAATCAACCCGCGTGGGCCTCCGTGAATGGGG-G--AATAACACG-CA-GGCCTTTA-TCC-CCAATATCG-ATTGAAAAATA-TTTC-ATTTAAAACGTAATG-CATCTCGTTT-GCG-ACT-GGATCCTA-T-TTACAAAGGAAGCAGGCGGAA-GGGA-CTTGTTTT--GAATAA--TCCT-GCTGGGATAACCGAG-CAATTAACGATGCCCAT-T-GTGTCTATGCACCGGAGTG-CGG-AAATC-AATACTATTAGCTTTATTATTGCGGATG-TT-GG--TTATAG-AAAT-TT-G---AGA---TACA-CCGGAC--CGTCTGCTCTCATC-GTA-TGCT-CGTTTGT-GTTTA-CCGA-CACCCCCTGTACCCCAGACGGGACTCAGACGA--ATTGC--TCTCA-TTG-T-AAGGA-TTTTT-C-AGAAATGCGAACTTGCTAACC---AG--ACCATTT-AAAACC-CTACAGC-AAGCTAA-TAAAA-C-GA-CACGGT-GCTCACAGTT
gi|6 : TTGTTG-TAG-CGCGTC--TACA-CAC-CCAGAAATCAAATGACCCGGAATGGGAAAAGA-AATGGTTAC--GCA-TGATAAAGGGA-GATTTCA-AAACACTCGAT-CAGAAA--CGAG-AAGCGA-T-AGCAT-TGATG-GAACA-AGCTGGGT-G-TG--CTATT-AACCAA-CCGTGCGGGCC-ACGTGAATGGGA-G-CAATTACA-A-CA-GGCGCTTGTCCC-GCAATATCG-CTTG-AAAATA-TTTCAGTTCAAAACG-AATA-TATCTCGTTT-GTG-ACT-GGAAGCTA-T-TTACAAAGGA--CAGG-G-ATCGGGA-CTTG-TTT--GAAT-A--TCCT-GCT-GGATAAACGAG-C-ATT-ACGATG-C-AT-T-GTCTCTATGG-CCGGAGTGACGGAAAATC-AATACTATT-GC--GATTATTGC-GATGGTT-GG--CTACAG-TCACATT-GAGAAGA---A-CATCCGGAC--CGT-TGCTCTCATC-G-ACTGCT-CGTTT---GTTTAGCCGAACACCCCCTGTACCCCGGACGGGACTCAGACGA--ATTGC--TCTCA-TTG-TAAAGGA-TTTTT-C-AGAAATGCAGCTT-GTT-ACC---AG-AACCATTT-AAAACC-CTACAGC-AG--TAA-TACAA-C-GACCACGGT-G--TGCAGTTTA----GGGCGCTGTGACGAGTGTCA-GAAATGGATGACCAAGAAA-TTAT-TAAAAGGAC-ACGCGTG-TGAAGG-TTAAACACAATGCCGC-A-TCTGTC-AAAAAGTCGT-CCCCATGCC-CCATCGCTGCTTTGTACAGATG-AAACCCA-AACCCAAGAAAGAAAAGG-AC-TTG-AAAATGTACAT--TTATTACG-ATTTTT-AAA-GCAGTCAAGAAA-AC-GGCA-TA-CACAC--T-CCAAAT-CTAT-GCGT-GGC--AG-ATCGTGT--GTGTCA-----AC-A-TTG--CGACAGT-TTGGA-TAT-C-GACACCCCCCTG-TCCTC-ATTGT--ATAGGA--T------T------CAACTGTG---CTT-TATATTTCA-AGGACCCGACACAT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGT--CCGA-GACC-GACGA-G-CAA-GGCTATGTGGAA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCACACAATTT-CAAAGGAT---A-CG-ATGGACAGTTTA-TTTTGAATTACCTG
gi|7 : ggCG-ATTG-AAAATA-TTTCAGTTCAAAACG-AAAA-CATCTCATT--AAG-ACT-GGAACCTA-T-TTACAAAAGA--CAGG-GGA-CGGGA-CTTA-CTT--AAAT-A--TCCT-GCA-GGATAA-TGAG-C-ATT-ACGATA-GCAT-T-GTCTCTATGA-CCGGAGTGACAGAAAATC-AATACTATT-GC--GAT----------A-TT-GG--CTATAG-AAATATT-AA--AGA---T-CA-CCGGAC--TGTCTGTTTTCATC-G-A-TGCT-CGTTT-T-GTTTAGCCGA-TACCCCCTGTACCCCGGACGGGACTCAAACGG--ATTGC--CTGCA-TTG-TAAGGGA-TTTTT-T-AGAAATGCGGCTT-GCT-ACC---AG-AACCATTT-CCAACC-CCACAGC-AG--TAG-TACAA-C-CACCACGGT-A--TGCAGTTTAAGG-GGTCGCTGCGACGAGTGCCA-GAAATGGATGCCCAAGCAA-TTAT-TACGAGGCC-ACGCTTG-TGGAGG-TCAAACACAGTGCCAC-A-TCTGTC-AAAAAGTCGT-CGCCATGCC-CCATCACTGCTTTGTACAGATG--AACCCA-AACCTAAAAAGGAAAAGG-AC-TTG-AAAATGTAAAT--TTATTACG-ATTTCG-AAT-CCAGCCAGGAAA-AC-GGAA-TT-CACA---TCCCCAAT-TTAT-GCGT-GGC--AG-ATCGTGT--GTGTCA-----AT-A-TTG--TGACAGT-TTGGA-TAT-C-GAAA-AGCCCCG-TCCTC-ATTGT--ATAGGAT-T------TGGATCGCAACGGCG---CTT-CCTATTTCA-AGGACTCGACACGT-T--AAAACACT---TTATG-GAATGGCTCTTACAGT--CAGA-GACC-GACCA-G-AAA-GGCTATGTGGGA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCACACAATTT-CAAAGGAT---A-CG-ATGGGCAGTTTA-TTTTGAATTACCTGgttcacacggcttgtatcaaacccaccgtcatcctgaacggcagtaaaatcttatccatgcaaatcttggggttgtgattcatcgattcttacaactttctgccctttgccctcgctaagatgccatctgcttccggattaaccgagctgaaaaaagggtatttccctcactttttcaacacgacagagaaccagtattacgtgggtccttaccccgccgctcatttctacaatcctgacgatatgtccactgccaatcgtgaagctttcta
gi|8 : CGGAAG-ACTG----GT-----AATGAGGTGCTACAG-------GTATATAAAGCGGGGCGCAGTTGCTATG-CCAGTCACTTTTCGACA-TCATGGT-CAGGATCACAGTTA-CCT-AGTGGACTTTCCACGCCAGTTTATA-TTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-GA-TCA-GAACT-GAA-CAGACCCCAA--C-CGCAG-CGT-GAATTA-AAC-TTCCGGCAGAGA-GAGCTCAACG-GCGTAC-T-ACAATATTCTA-A-GCGGAGGAGGGG-GAAAAAAAAGGAAACCGAACTTCA-TTT-GGATTTTTACTCAAAAAT--TCAAC-TGGAACGAT--GGCGTCAATTC-ACGGAAA--TTTAAAGTTCAAGGAAA-ATGTCTACAATG---TTGCCATCAAGCCCATCCCGGA-GA-AA-GAA--AATA-CA-GCCTGT-CA--TTCGTCG-CC-TCTTCG---GG-GA-TATGCGTTAATAATGTGAAAAC-AGGGAAATGCAGTTGCAACCC--A-TA-ATTT-ATCT--ACGTTTGGAATATTCGGCACC--C-GTCTCTGG-ACT-TTGA--ATTTGAGTATGAA-TTACTACAGTTCAAAACAGGCTCT----AACGAGGACAAAA-TT-CTG-AATACCAAAATA-GAA-TCGG-TGCA-GCAATC-TAACAAAGGAATTCCT-AATCACAA---GAGGGGCCGTGCAGTTT-GA----TTC-CATGT-TCA---ATACCC-C-AG-GCAG-CGGAGG---GAGAT----CAG-A---AAA--CA-TCTGCATGTGGATAA-AGAGAAATTCAAAAACT-CCAAAGAGAGCGATTCTGTTA-CGCA-TTCAAAATCCTGA-GATTCA--T--GTGTCTACCCCGGCCT-TTGTAG-TGG-TGCGGCGTTACA-TAG-CCAGAAATCAAAT-ACCTGGCgttcacacagcttgtatcaaacctaccgtcatcgtcaacggcagtgaaatcttatccatgcaagttttggggttgggattcatcgattctcataactttctgccctttgccctagctaagatgccctctgttttcggattaaacgagctgaaaaaaggatatttccctcactttttcaacacgacagaaaaccagcattacgtgggtccttaccacgccc
gi|9 : A--CA-TCTGCATGTGAATAA-GGAAAAATTCAAAAACT-GC-AAGAGGGCGAT--CGTT--CGCA-TTCAAAATCCTGAGGATTCTC-T--CTGCTTGCCCCAGGCTATTGTTG-TAG-CGCGTC--TACA-CAG-CCAGAAATCAAACGACCCGGCATGGGAAACGA-AATGGAAAC--GGA-TGAGGCTTGGG-GATA-CACAGGCTTTCGAT-CAGAAA--CGAC-AAGCGA-T-AGCGC-TGATT-GAACA-AGCTGAGT-G-TC--CTATG-AACTAA-CCGTGTGGGCA-ACGTGAATGGGG-G-AAATTACA-G-CA-GGCGCTTC-CCC-GCAATATCG-ATTG-AAAATA-TTTTAATTCAAAACG-AATA-CAGCTCCTTT-GCG-ATT-GGAACCTA-T-TTACAAAGGA--CAGG-GT-ACGGGA-CTTG-TTT--GAAT-A--TCCT-GCT-TGATAA-CGAG-C-ATT-ACGATA-CCAT-T-GTGTCTACGC-CCGGAGTGACGGAAAATC-AACACTATT-GC--GATTATTCC-GATG-T
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CAGAGAACCAGCAGTATGTGGGTCCTTACCGAGCCGCTCATTTCTAC
Alignments
lowQualScore : 555555555555 22 4444444 11 111 111 111111 111 22 111 11 1111 1 1 222222 111 1111 111111 1111 1111 111 11 11 11111 1 1 111 11 11 1 11111 111 111 1 11 11111 1 11 3333333333333333 11 111 111
lowQualScore : 8 666666666666 22 6666666 6 0 6 99 6 6 888 55 6 6 6 5 5 5 5 5 5 77 5 5 5 5 77 5 5 000 77 5 5 5 777 5 77 5 5 5 5 6 6 3 6 6 6 777 1 111 999999 6 888 99 6 99 6 6 22 6 6 111 4 6 6 6 55 6 6 6 6 99 6 6 4444 6 6 999 6 1 6 6 6 9 6 6 6 6 99 6 888 99 6 6 5 5 5 5 5 3 111111 6 6 6 111 6 6 6 6 6 6 6 4444 1 6 7 6 777777 5 6 6 44 4444 4444 6 111 77 5 3 5 5 5 5 77 5 33 5 4 9999 1 0 4 8 22 4 4 0 0 5 44 66 0 5 1 777 5 5 2 1 0 5 66 5 5 5 5 5 5 1 88 22222 5 5 5 2 2 5 5 5 0 5 5 0 5 4 4 4 1 8 4 4 4 4 4 4 66 5 111 5 11 11 5 5 5 5 5 5 5 555 5 5 1 5 5 5 66 5 0 77 5 5 77 88888 5 77 4 5 5 5 5 999 5 0 77 77 5 5 5 5 5 77 5 000 5 5 5 5 77 5 5 5 5 77 5 6 5 3 5 6 6 0 6 6 888 6 6 6 6 6 6 6 6 99 6 6 6 5 5 5 5 555 5 5 0 1 5 55 5 66 22222 5 5 66 5 0 5 5 5 1 5 5 11 1 9999999999999999 888 5 2 5 2 5 33 000 5 77 5 5 5 5 5 1 77 5 77 5 5 5 5 5 0 5 5 000 5 5 6
lowQualScore : . ............ .. ....... . . . .. . . ... .. . . . . . . . . . .. . . . . .. . . ... .. . . . ... . .. . . . . . . . . . . ... . ... ...... . ... .. . .. . . .. . . ... . . . . .. . . . . .. . . .... . . ... . . . . . . . . . . .. . ... .. . . . . . . . . ...... . . . ... . . . . . . . .... . . . . ...... . . . .. .... .... . ... .. . . . . . . .. . .. . . .... . . . . .. . . . . . .. .. . . . ... . . . . . . .. . . . . . . . .. ..... . . . . . . . . . . . . . . . . . . . . . . . . .. . ... . .. .. . . . . . . . ... . . . . . . .. . . .. . . .. ..... . .. . . . . . ... . . .. .. . . . . . .. . ... . . . . .. . . . . .. . . . . . . . . . . ... . . . . . . . . .. . . . . . . . ... . . . . . .. . .. ..... . . .. . . . . . . . . .. . ................ ... . . . . . .. ... . .. . . . . . . .. . .. . . . . . . . . ... . . .
lowQualScore : 0 222222222222 77 8888888 7 7 7 22 7 7 333 88 7 7 7 7 7 7 7 7 7 99 7 7 7 7 99 7 7 000 99 7 7 7 000 7 99 7 7 7 7 7 7 7 7 7 7 555 5 777 222222 7 333 22 7 22 7 7 22 7 7 777 2 7 7 7 88 7 7 7 7 22 7 7 2222 7 7 222 7 3 7 7 7 3 7 7 7 7 22 7 333 22 7 7 7 7 7 7 7 3 888888 7 7 7 777 7 7 7 7 7 7 7 8888 0 7 3 7 222222 7 7 7 22 2222 2222 7 777 99 7 6 7 1 7 7 99 7 66 7 3 0000 4 1 4 9 22 4 4 1 2 0 66 99 8 0 0 666 0 0 5 4 2 0 99 0 0 0 0 0 0 0 22 55555 0 0 0 5 8 0 0 0 0 0 0 0 0 4 4 4 4 9 4 4 4 4 4 4 99 0 000 0 99 99 0 0 0 0 0 0 0 666 0 0 4 0 0 0 99 0 0 99 7 7 99 33333 7 99 3 7 7 7 7 444 7 7 99 99 7 7 7 7 7 11 7 000 7 7 7 7 99 7 7 7 7 99 0 7 7 9 7 7 7 7 7 7 333 7 7 7 7 7 7 7 7 22 7 7 7 7 7 7 7 777 7 7 1 4 7 77 7 99 55555 0 0 99 0 0 0 0 0 4 0 0 99 0 0000000000000000 888 0 0 0 5 7 66 000 7 99 7 7 7 7 7 3 99 7 99 7 7 7 7 7 7 0 7 000 7 7 7
consensus : GCGGAAG-TTTA----GTA-----ATGAGGT-CTACAGTA-----GTATATAAAGCGGGGCGCGGT-GCATTG-GCAGTCACTTT-CGACA-TCATG-T-CAGA--CA-AGTTA-CCT-AGTGGACTT-CCACGC-AGTT-ATA-TTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-GA-TCA-G--CT-GAA-CAGAC---AA--C-GGCAG-CGT-GAATTACAAC-TCC--GCAGAGA-GAA-TCAACG-GCG-AC-T-ACAGTATT-TACA-GCGG-GGAGGG-G-GAAAAAA---GAAAC------TCA-TTTCGGATTATTAC---AAAAT--TCAAC-TGGAACGAG--GGCGTCAAT-C-ACGGAAAA-TTTAAAGT-CAAGGAAA-ATGTCTACAATG---TTGCCATCAAGCCTATCCCGGA-GA-AA-GAA--AACA-CA-GCCT-T-CA--TTCGTCG-CC-TCTTCC---GG-GA-TATGC-TNAAAAATGTGAAAAC-A-GGAAATGCAG-TGCAACCCCAA-TG-A-TT-ATCT--ACGTTT-GAATATTCGGCA-C--C-GTCTCTGG-ACT-CTGA-TATTTG-GTATGAATTTAC-GCAG-TCAAAACA-GCT-N----AACGAGGACAAAA-TT-CTG-AA---CAAAATA-GAA-TCCG-TGCA-GCAATC-TAA-AAAGGAATTCCT-AATCAC---AGACGGGGCCGTGCAGTTT-GATTTTTTC-CATGTGAAA---ATACCCACAAG-GCAG-CGGAGG---GAGAT----CTA-A---AAA--CA-TCTGCATGTGGATAA-AGAGAAATTCCAAAAC-TCC-AAGAGAGCGAT--CG-TT--CGC-ATTCAAAATCCTGACGATTCAT-T--GTGTCTACCCCGGGCTATTGTGG-TAG-CGCGTC--TACA-CAG-CCAGAAATCAAATGACCCGGCATGGGAAACGA-AATGGNTAA--GAA-TGNGGNANGGG-GATA-CACAGACTCTCGAC-CAGAAA--CGAC-AA-GCGA-T-AGCCT-TGATG-GAACAAGCNGGG-TGTGCT-----ATGAA-CCAA-CC-GTGTGGGCCTC-GTGAATGGGG-G-CAATTACA-G-C-AGGCGCTCG-CCC-GCAATATCG-ATTGAAAA-T-ATTTCAATTCAAAACG-AATA-CATCTCGTTT-GCG-ACT-GGAACCTA-T-TTACAAAGGA--CAGG-GGAACGGGA-CTTGTTT--GAATA--TCC-TGCTGG-ATAA-C-GAG-CA-TTA-CGATGCC-AT-T-GTCTCTATGC-CCGGAGTGACGGAAAATC-AATACTATT-GCG--ATTATTGCG-ATG-TTGG--TTATAG-AAATA-TTGA--AGA---T-CA-CCGGAC--CGTGTGTCCTCATC-G-A-TGCT-CGTTT-T-GTTTAGCCGA-CACCCCCTGTACCCCGGACGGGACTCAGACGA--ATTGC--CCTCA-TTG-TAAAGGA-TTTTT-C-AGAAATGCG-GCTTGTT-ACC---AG-AACCATTT-AAAACC-CTACAGC-AG--TAA-TACAA-C-GACCACGGT-G--TGCAGTTTAATG-GGGCGCTGTGACCAGTGTAA-GAAATGGATGTCCAAGCAA-TTAT-TAAAACGCC-ACGCTTG-TGGAGG-TCAAACACAATGCCGC-A-TCTGTC-AAAAAGTCGT-CACCATGCC-TCATCACTGCTTTGTACAGACG-AAACCCA-AACCTAAGAAAGAAAAGG-AC-TTG-AAAATGTACAT--TTATTACG-ATTTTG-AAT-GCAGTCAGGAAA-AC-GGAA-TT-CACA---T-CCCAAT-TTAT-GCGT-GGC--AG-ATCGTGT--GTGTCA-----AC-A-TTG--CGACAGT-CTGGA-TAT-C-GACA-AGCCCTG-TCCTC-ATTGT--ANAGGAT-T------T------CAACGGCG---CTT-CATATTTCA-AGGACCCGACACGT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGT--CCGA-GACC-GACGA-G-CAA-GGCTATGTGGAA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCCCACAATTT-CAAAGGAT---A-CG-ATGGGCAGTTTA-TTTTGAATTACCTG
Reference ( family-4236 ) : GCGGAAG-TTTA----GCG-----ATGAGGT-CTACAGTA-----GTATATAAAGCGGGGCGCGGT-GCATTG-GCAGTCACTTT-CGACA-TCATG-T-CAGA--CA-AGTTA-CCT-AGTGGACTT-CCACGC-AGTT-ATA-TTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-GA-TCA-G--CT-GAA-CAGAC---AA--C-GGCAG-CGT-GAATTACAAC-TCC--GCAGAGA-GAA-TCAACG-GCG-AC-T-ACAGTATT-TACA-GCGG-GGAGGG-G-GAAAAAA---GAAAC------TCA-TTTCGGATTATTAC---AAAAT--TCAAC-TGGAACGAG--GGCGTCAAT-C-ACGGAAAA-TTTAAAGT-CAAGGAAA-ATGTCTACAATG---TTGCCATCAAGCCTATCCCGGA-GA-AA-GAA--AACA-CA-GCCT-T-CA--TTCGTCG-CC-TCTTCC---GG-GA-TATGC-TNAAAAATGTGAAAAC-A-GGAAATGCAG-TGCAACCCCAA-TG-A-TT-ATCT--ACGTTT-GAATATTCGGCA-C--C-GTCTCTGG-ACT-CTGA-TATTTG-GTATGAATTTAC-GCAG-TCAAAACA-GCT-N----AACGAGGACAAAA-TT-CTG-AA---CAAAATA-GAA-TCCG-TGCA-GCAATC-TAA-AAAGGAATTCCT-AATCAC---AGACGGGGCCGTGCAGTTT-GATTTTTTC-CATGTGAAA---ATACCCACAAG-GCAG-CGGAGG---GAGAT----CTA-A---AAA--CA-TCTGCATGTGGATAA-AGAGAAATTTCAAAAC-TCC-AAGAGAGCGAT--CG-TT--CGC-ATTCAAAATCCTGACGATTCAT-T--GTGTCTACCCCGGGCTATTGTGG-TAG-CGCGTC--TACA-CAG-CCAGAAATCAAATGACCCGGCATGGGAAACGA-AATGGNTAA--GAA-TGNGGNANGGG-GATA-CACAGACTCTCGAC-CAGAAA--CGAC-AA-GCGA-T-AGCCT-TGATG-GAACAAGCNGGG-TGTGCT-----ATGAA-CCAA-CC-GTGTGGGCCNC-GTGAATGGGG-G-CAATTACA-G-C-AGGCGCTCG-CCC-GCAATATCG-ATTGAAAA-T-ATTTCAATTCAAAACG-AATA-CATCTCGTTT-GCG-ACT-GGAACCTA-T-TTACAAAGGA--CAGG-GGAACGGGA-CTTGTTT--GAATA--TCC-TGCTGG-ATAA-C-GAG-CA-TTA-CGATGCC-AT-T-GTCTCTATGC-CCGGAGTGACGGAAAATC-AATACTATT-GCG--ATTATTGCG-ATG-TTGG--TTATAG-AAATA-TTGA--AGA---T-CA-CCGGAC--CGTGTGTCCTCATC-G-A-TGCT-CGTTT-T-GTTTAGCCGA-CACCCCCTGTACCCCGGACGGGACTCAGACGA--ATTGC--CCTCA-TTG-TAAAGGA-TTTTT-C-AGAAATGCG-GCTTGTT-ACC---AG-AACCATTT-AAAACC-CTACAGC-AG--TAA-TACAA-C-GACCACGGT-G--TGCAGTTTAATG-GGGCGCTGTGACCAGTGTAA-GAAATGGATGTCCAAGCAA-TTAT-TAAAACGCC-ACGCTTG-TGGAGG-TCAAACACAATGCCGC-A-TCTGTC-AAAAAGTCGT-CACCATGCC-TCATCACTGCTTTGTACAGACG-AAACCCA-AACCTAAGAAAGAAAAGG-AC-TTG-AAAATGTACAT--TTATTACG-ATTTTG-AAT-GCAGTCAGGAAA-AC-GGAA-TT-CACA---T-CCCAAT-TTAT-GCGT-GGC--AG-ATCGTGT--GTGTCA-----AC-A-TTG--CGACAGT-CTGGA-TAT-C-GACA-AGCCCTG-TCCTC-ATTGT--ANAGGAT-T------T------CAACGGCG---CTT-CATATTTCA-AGGACCCGACACGT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGT--CCGA-GACC-GACGA-G-CAA-GGCTATGTGGAA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCCCACAATTT-CAAAGGAT---A-CG-ATGGGCAGTTTA-TTTTGAATTACCTG
gi|1 : GAAGATTTA----G-------GTGAGGT-CTACGGTA-----TTATA---AGCGGGGCGCAGT-GCATTG-GCAGTCACTTT-CGACA-TCATG-T-CAGA--CA-AGTTAACCT-AGTGGACTT-CCACGC-AGTT-ATA-T-GAAC-AGCG-ATGAAGA--T-TTTTGAATTGA-TCA-G--CT-GAA-CAGAC---AA--CCGGCAG-CGT-GAATTACAAC-TCC--GCAGAGA-GAA-TCAACG-GCG-AC-T-ACAGTATT-TACA-GCGG-GGAGGG-G-GGAAAAA----AAAC------TCA-TTTCGGAT-ATTA----AAAAT--TCAAC-TGGAACGAG--GGCGTCAAT-C-ACGGAAAAGTTTAAATT-CAAGGAAA--TGTCTACAATG---TTGCCATCAAACCTATCCCGGA-GA-AA-GAA--AACA-CA-GCCT-T-CA--TTCGTCG-CC-TCTTC----GG-GA-TATGC-TGAAAAATGTGAAA-C-A-GGAAATGCAG-TGCAACTCCAA-TG-A--T-ATCT--ACGTTT-GATTATTCGG---C--C-GTCTCTGG-ATT-CTGATTATTTG-GTATGAATTTAC-GC-G-TCAAAACT-GCT-G----AAC-AGGACAAAA-TT-CTG-AA---CAAAATA-G-A-TTCG-TGCA-GCAATC-TAA-AAAGAGATTTTT-GATC-CAGGAGACGGGA--GTGCAGTTT-GA-TTTTTC-CAAGTG-AA---ATATCCACAAG-GCAG-CGGGGGAAAGAGA-------A-A---AAA--CA-TCTGCATGTGGATAA-AGAGAAA-TCCAAGACTTCC-AAGAGAGCGAT--CGTTT--CGCAATCCAAAATCCT-ACGATTCAT-T--GTGTCTACCC--GGCTATTGTGG-TAGTCGCGTC--TACAGCAC-CCAGAAATCAAA-GATCCCGCATGGGAATCAATAATGGTTAA--GAA-TGCGG-AAGGA-GATA-CACAGAGTGTTGACACAGAAA--CAAC-AA-GCGA-T-AGCGC-TGATA-GAACAAGCGGGGTTGTGCT-----ATGAA-CCAA-CC-GTGTGGGCCTC-GTGAATGGGG-A-CAATTACAGG-CAAGGCGCTCG-TCC-CTAATATAG-A-TGAAGA-TAATTTCAATTTAAAACG-AATA-CATCTCGTTT-GCG-ACT-GGAAACTA-T-TTACAAGGAA--TGGG-GGACGGGGA-CTTGTTTTGAAATA--TCCTTGCTGG-ATAA-C-GAG-CA-TTA-CGATGCT-TTGT-GTCTCTATGC-CTGGAGTGACGGAAAATC-AATACTATT-GCG--ATTATTGCG-ATGTTTGG--TTATAG-AAATATTTGA--AGA---T-CA-CCGGAC--CGTGTGTCCTCATC-G-A-TGCT-CGTTT-T-GTTTAGCCG---ACCCCCTGTA--CCGGACGGGGCTCAGACGA--ATTGC--CTCTA-TTG-TAAAGGA-TTTTT-CAAGAAATGCA-GCTTGTT-ATC---AG-AACCATTT-AAAACC-CTACAAC-AG--TAA-TACAA-C-GACCACGGT-G--TGCAGTTTAATG-GGGCGCTGTGACCAGTGTAA-GAAATGGATGTCCAAACAA-T--T-TAAAACGCC-ATGCTTG-TGGAGG-TCAAACACAATG-CGCAA-TCTGTC-AAAAAGTCGT-CACCATGCC-TCATCACTGCTTTGTA-AGACG-AAACCCA-AACCTAAAGAAACAAAGG-AC-TTG-AAAATGTACAT--TTATTACG-A-TTTG-AAT-GCAGTCAGGAAA-AC-GGAA-TT-CACA---T-CCCAAT-T--T-GCGT-GGC--AGAAACGTGT--GTGTCA-----AC-ATTTG--CGACAGT-CTGGA-TAT-C-GACA-AGCCCTG-TCCTCAATTGTCAAAGGGAT-C------T------CAACGGCACGTCTT-CATATTTCA-GGGA-CTGCAACGT-T--AAAACAGT---TTATG-AATTG--TCTTACAGT--CCGA-GACC---CGACG-CAA-GGCGATGTGGAA--C-TCAAC--GACGATGCAAGCCACC-A-TC-A--TGCCCAC-ATTT-CAAAGGAT---A-CG-ATGGGCAGTTTA-TTTTGAATTACCTG
gi|10 : AGACAGGGAA-AC-GGAA-TTTCACA---C-CCCAAT-TCGTAGCGTAGGC--AG-ATCG-GT--GTGTCAGATCGACTC-TTGATCGACAAA-CTTTACTATTC-GACA-A--CCTGCTCTTC-ATTGT--ATAGGAT-T------TGGATCGCAACGCCG---CTT-CGTATTTCA-AGGAACAGACACGT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGT--CCGA-GGGC-GACGA-G-AAA-AGCTATGTGGAA--C-TCAAA--CACGATG-AAGCCAGC-A-TC-A-TTGCACACAATTT-CAAAGGAT---G-CG-ATGGGCAGTTTATTTTTAAATTACCTGgttcacaggcggtgtatcaaaccccgttatcctgattgggagtaaaatcttatccatgcaagtcttgggctgagatttatcgattcttacaactttctgccttttccctcgccaagatgcctctgctttcggcttaacggaattgaaaaaaggatattttcctcactttttcaaacacgaccgatgcaaccagcagtatgttggcgtctttacccgcccctcatttctacaatcctgatgatatgtctcgccgccaatctgtgaagcttct
gi|11 : CGATTCAT-T--GTGTCTACCACGGGCTATTGTGG-TAG-CGCGTC--TACA-CAC-CTCGAAATCAAATGACCTGGCATGGGAAACGA-AATGGAAAC--GGA-TGAGGCTTGGG-GATA-CACAGGCTCTCGAC-CAGAAA--CGAC-AA-GCGG-A-AGCCT-TGATG-GAACAAGCTGAG-TGTGCT-----ATGAA-TCAA-CC-GTGTG---------GAATGGGG-G-CAATTACA-G-C-AGGCGCTCGCCCC-GCAGTATCG-ATTGAAAA-T-ATTTCAATTCAAAACG-AATA-CATCTCGTTT-GCG-ACT-GGAACCTA-T-TTTCAAAGgttcgcacggcttgtatcaaacccaccgtcatcttcaacggcagtaaaatcttattcatgcaagtcttgcgtgtttgagattcgtcgattcttacaattttctgtccttggccctcgcc
gi|12 : GCGGAAA-TTTACAGTGTA-----ATGAGGT--TATAGTAAAA--GTATATAAAGCGGTGCGTGGT-GCATTT-GCAGTCACTTT-CGACA-TCATG-T-CAGA--CA-AGTTA-CCT-AGTGGACTT-CCACGC-AGTT-ATA-CTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-GA-TCA-G--CT-GAA-CAGAC---AA--C-GGGAG-CGT-GAATTAC---------------A-GAA-TCAACG-GTG-
gi|13 : tGTGT--GTGTCA-----AC-A-TTG--CGACAGT-TTGGA-TAA-C-GACA-AGTACTG-TCCTC-ATTGT--ATAGGAT-TTGGATGT------CAACGGCG---CTT-CATATTTCA-AGGACCC
gi|15 : TGACCAGTGTAG-GAAATGGATGTCCAAGCAC-TT
gi|16 : -CTGA-TATTTG-GTACGAATTTAC-GCAG-TCAAA
gi|2 : GACTT-CCACGC-AGTT-ATA-TTGAAC-AGCGGATTGAGAGCT-TTTTTAAT-GA-TCAAG--CT-GAAACAGAC---AA--C-GGCAAACGT-GAATTAACCC-TCT--GCAGAGA-GAA-TCAACG-GCG-AC-T-ACA-TATT-T-CA-GCGG-GGCGGG-G-GCAAAAA---GAA-C------TCA-TT-CGGATTATTAC---AA-----TCAAC-TG--ACGAG--GGCGTCAAT-C-ACGGAAA--TTTAA-GT-CAAGGAAA-ATGTATACAATG---TTTCCATCAAGCC-ATCCCGGA-GA-AAAGAA--AACA-CAAGCCT-T-CA--TTCGTCG-CC-TCTTCC---CG-GA-TATGC-TTAAAA-TGTTGAAACTA-GGAAATGCAG-TGCAACCC-AA-TG-A-TT-ATCT--ACGTTT-GAATATTCGGCA-CACC-GTCTCTGGCACT-CTGA-TATT-G-GTATGA-TTTAC-ACAG-TCAAAACAAGCT-TCAAAAACGAG-ACAAAACTT-CTG-AA---CAAAATAAGAA-TCCGCTGCA-GCA-TCGTAA-AAAGGAATTCCTTAATCAA---CGCCGGGGCCGTGCAGTTT-GATTTTTTC-CATGTGAAATTAATACCCA--AG-GCAG-CGG--------GCTTGCACTA-ACAAAAA--CAATCTCC-TGTGGATAA-AGAAAA--TTCAAAAC-TC--AAGAGAGCGAT--CG-TTTCCGC-ATT-ACAACCCTGACGATTCAT-T--GTGTCTACCCGGGGCTATTGTG--TAG-CGCGTC--TACA-CAGGCCAGAAATCAAATGACCCGGT-TAGGGAACGA-A-TGGCTAA--GAAATGCGGAAAAGGAGATT-CA-AAACTCTCGAC-CAGAAC--CGAG-AA-GCGA-TTAGCCTCTGATG-GAACAAGGTGGG--GTGCT-----ATGAA-TCAA-CC-GTGTGG--CCT-GTGAATGGGGAG-CAATCAGA-G-T-GTGCGCTCG-CCCCGCAGT-TCG--CTGAAAA-T-ATTT--ATTTAAAACG-AATAACATCTCGTTT-GCG-ACTTGGAAC-TA-TCTTACAAAGGA--CAGG-GGGACGGGAACTTGTTT--GAATA--TCC-TGCTGG-ATA--C-GAGGCA-T-A-CGATGCT--T-T-GTGT-TATGC-CCGGAGTGACG-AAAACA-AATACTATT-GCG--ATTATTGCG-ATG-TTGGGCTAACAG-TCACA-TTGA--AGAA--T-CA-TCAGACGCCGTGTGTCTCTATC-G-A-TGCTTCGTTT-TTGTTTAGCCGA-CACCCCCTGTAACCCGGACGGAACTCAGACGA--ATTGCCTCCTCATTTG-TAAAGGACTTTTT-C-AGAAATGCA-GCTTGTT-A-C---AG-A--CATTT-AAAACC-CTACAGCAAG--TAATTACAACC-GACCACGGT-G--T-CAG-TTAATG-GGGCGCTGTGACC-GTGTAA-GAAATGGATG----AGCACTTTAT-TAAAACGCCAATGCTTGCTGGAGG--CAAAC-TAATGCCG----TCTGTCAAAAAAGTCGTCCACCATGCC-TCCTCACTGCTTTGTACAG-CG-AAACCCA-AACCTAAAGAAGAAAAGG-ACTTTG-AACATGTACAT--TTTTTACGCATTTTGCCATGGCAGTCAGGAAA-AC-GGAA-TT-CACAATTT-CCCCAT-TTAT-GC-T-GGCAAAG-AACGTGTTGGTGTTC-----AC-A-TTG--CGACAGTCCTGGA-TAT-C-GACA-AGCCT---TCCTC-ATTGT--CAAGGA--T------T------CAACGGCG---CTT-T-CATTTCA-AGGACCCGACACGT-TAAAAAACAG----TTATG-GAATGGCTCTTACAGTTCCCG--GCCC-GACGA-G-CAA-GGCTATGTG--A--T-TC-AA--CACG-TG-AAGCCACCGA-TCAA-TTGCCCACAATTT-CAAA-GAT---ATCG-AAGGACAGTTTA-TTTTGAATTACCTG
gi|3 : TGAGGTGTTACAG-------GTA-ATAAAGCGGG-CGCAGG-CCATTG-GCACTCACTTT-CGACAATCATG-TTCAGA--CA-AGGTA-CCTGAGTGGACT--CCACGC-AGT--ATAGTTGAACCAGCG-ATTGAGA--T-TTTTGACT-GA-TCA-G--CTTGAA-CAGAC---AAAAC-GGCAG-CGT-GAATTACA-C-TCC--GCAGAGATGAA-TCA-CGAGCG-AC-TGACAGTATT-TACA-GCGG-GAGGGG-C-TAAAAAA---GAAAC-------CA-TTTCGGATTATTAC---AAAAT--TCAACGTGGA-CGAG--GGCGTCAAT-CCACGGAAAA-TTTAAAGT-CAAGGAAAGATGTC-ACAATGCCCTTGC-ATCAAACCCATCCGAGA-GA-AA-GAATAAATA-CA-GCCT-TTCA--TTCGTCGGCCGTCTTCCCGGGGCGA-TATGT-GAAGAAAT-TGAAAAC-A-AGAAGTGCAG-TGCAACCCCAAATG-A-TTGATCTTGACGTTT---ATATTCGG-A-C--CTGTCTCTGG-ACT-CTGA-TATTTG-GTATGAATTTAC-GCAG-TCAAA-CA-GCT-C----AACGAGGACAAAA-TT-CTG-AA---CAAAATA-GAA-TCCG-T-CA-GCAATC-TAA-AAAGGAATTCTA-AATCAC---AGACGGGGCCGTTCAGTTT-GATTTTTTC-CATGTG-AC---ATATCCACGAA-GCAG-CGGA-G---GAGAT----CTA-A---AAAACCA-TCTGCATGTG--TAACGGAAAAATTTCAGACT-TCC-AAGAGAGCGAT--CG-TT--CGC-ATGAAACAACCTGACGAGTCATGTTGGTGTCTACCCC-GGCTATTGGGGTTAG-CGCGTCTGTACA-CAG-CCGAGAATCAAATGACCCGGGCTGTGAAACAA-AATGGTTAA--GAA-TGCGGGAA-GG-AATA-CACAGAGTGT--GC-CAGAAAACCAACGAA-GCGA-T-AACCT-TGATGCGAACAAGCGGGG-T-TGCT-----AGGAA-CCAAGCC-GTGTGGG-CTC-GTGAATGGGG-ACCAATTACA-GAT-AGGCGCTCG-CCC-GCAATATCGTATTGAAGA-T-ATTTCAATTTAAAACGCAATA-CATCTCGTTTGGCGAACT-GGAACCTATT-TTACAAGGGA--CAGG-G--ACGGGA-GTTGTTT--GAATATTTCC-TGCTGG-ATAA-C-GAG-CA-TTA-CGATG-C-AT-TGGTCTCTATGC-CCGGAGTGACGG--AATCGAATACTATT-GCG--ATTATTGTG-ATG-TTGG--TTATAG-AAATA-TTGA--AGAGATC-CA-CCGGAC--CGTGTGTCCTCATCAG-A-GGCT-CATTT-T-GTTTAGC--A-CA-CCCCTGTACCC--GACGGGACTCAGACGGATATTG---TCTCA-TTG-TAAAGGA-TTTTTGC-AGAAATGCA-GCTTGTT-ACC---AGAAAACATCT-AGAACCGCTACAGC-AG--TAA-TACAA-CGGACCACGGT-G--TGCAG-TTAATGAGGGCGCTGTGACCAGTGTAAGGAAAT-GATGTCCAAACAA-TTATGTAAAACGTC-ATGCTTG-TGGAGGTTCAAATACAATGCCGC-AGTCTGTC--AAAAGTCGT-CACCATGCCTTCCTCACTGCTTGTTACAGACGAAAACCCATAACATAAGAAAGAAAAGGTAC-TTG-AAAATGTACATCCCTCTTACG-ATTTTG-AAT-GCAGTCAGGAAAGAC-GGAAGTT-CACA---T-CCCCATGTTATCGTGT-GGCAGAG-ATC-TG---GTGTCA-----AC-A-TTG--CGATAGT-TTAGATTAT-CGGACA-AGCCCTG--GCTC-ATTGTC-AAAGGATAC------T------CAACGGCG---CTTGCATATTTCATA----CCGACACGTGTA-AAAACAGTTTGTTATGCGAATGGCTCTTACAGT--CCGAGGACC-GACGA-GTCAAGGGCGATGTGGAAAGCGTCAAAACCAC-ATG-AAGCCACC-AGTC-ACTTGCCCACAATTTGCAAAGGATTAGA-CGAATGGgttcacacggcctgtatcaaactccgtcatcctcaacggcagtaaaatccttatccagaagtcttggggttgagattcatgcgattcttacaacttctctgccttttgctctcggccaagatgccctctgctttcggattaacggaattgaaaaaagatattagtcctcacttttcaacacgaccggagaaccagcagtattgggtccttaccccgcgctcatcttctacaatcctgacgattgtcgagaccaatcgtggaagccttcta
gi|4 : atttatgtGCGGAAG-TTTA----G-------GTGAGGT-CTACAG-------GTATATAAAGCGGGGCGCAGT-GCATTG--TAGTCACTTT-CGACA-TCATG-T-CAGA--CA-AGTTA-C-T-AGTG-ACTT-CCACGC-AGTT-ATA-TTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-GA-TCA-G--CT-GAA-CAGAC---AA--C-GGCAG-CGT-GAATTACAAC-TCC--GCAGAGA-GAA-TCAACG-GCG-AC-T-ACAATATT-TACA-GCGG-GGAGGG-GCAAAAAAA---GAAAC------TCA-TTTCGGATTATTACC--AAAAT--TCAAC-TGGAACGAG--GGCGTCAAT-C-ACGGAAA--TTTAAAGT-CAAGGAAA-ATGTCTACAATG---T-GCCATCAAGGCTATTCCAGA-GA-AA-GAA--AACA-CA-GCCT-T-CA--TTCGTCG-CC-TCTTCC---GG-GA-TATGC-TGAAAAATGTGAA--C-A-GGAAATGCAG-TGCAACCCCAA-TG-A-TT-ATCT--ACGTTT-GAATATTCGGCA-C--C-GTCTCTGG-ACT-CTGA-TATTTG-GTATGAATTTAC-GCAG-TCAAAACA-GCT-G----AACGAGGACAAAA-TT-CTG-AA---CAAAATA-GAAATCCG-TGCA-GCAATC-TAA-AAAGGAATTCCT-AATCAC---AGACGGG-CCGTGCAGTTT-GATTTTTTC-CATGTCAAA---ATACCCACAAG-GCAG-CGGAGG----AGAT----CTA-A---AAA--CA-TCTGCATGTGG-TAA-AGAGAAATTTCAAAAC-TCC-AAGAGAGCGAT--CG-TT--CGC-ATTCAAAATCCTGACGATTCAT-T--GTGTCTACCCCGGGCTATTGTGG-TAGACGCGAC--TACA-CAG-TCAGAAATCAAATGACCC-GCATGGGAAACGA-AATGGCTAA--GAA-TGCGGAAAGGA-GATA-CACGGAGTGTTGAC-CAGAAA--CAAC-AA-GCGA-T-AACCT-TGATG-GAACAAGCGGGG-TGTGCT-----ATGAA-TCAA-CC-GTGTGGGCCTT-GTGAATGGGC-G-CAATTACA-G-C-AGGCGCTTG-CCC-GCAGTATCG-ATTGAAAA-T-ATTTCAGTTCAAAACG-AATA-CATCTCGTTT-GCG-ACT-GGAACCTA-T-TTACAAAGGA--CAGG-GGAACGGGA-CTTGTTT--G-ATA--TCC-TGCTGG-ATAA-C-GAG-CA-TTA-CGATGCC-AT-T-GTTTCTATGG-CCGGAGTGACGGAAAATC-AATACTATT-GCG--ATTATTGCG-ATG-TTGG--TTATAGAAAATA-TTGA--AGA---T-CA-CCGGAC--CGTGTGTCCT-ATC-G-A-TGCT-CGTTT-T-GTTTAGCCGA-TACCCCCTGTACCCCAGACGGGACTCAGACGA--ATTGC--TCGCA-TTGTTAAAGGA-TTTTT-C-AGAAATGCA-GC-TGTT-ACCAAAAG-AACCATTTAAAAACC-CTACAGC-AG--TAA-TACAA-C-GACCACGGTGG--TGCAGTTTAATG-GGGCGCTGTGACCAGTGTAA-GAAATGGATGTCAAAGAAA-TTAT-TAAAACGCC-ATGCTTG-TGGAGG-TCAAATACAATGCCGC-A-TCTGTC-AAAAAGTCGT-CACCATGCC-TCATCACTGCTTTGTACAGACG-AAACCCA-AACCTAAGAAAGAAAAGG-AT-TTGAAAAATGTACAT--TTATTACG-ATTTTG-AAT-GCAGTCAGGAAA-ACGGGAA-TT-CACA---T-CCCAAT-TTAT-GTGT-GGC--AG-ATCGTGT--GTGTCA-----AC-A-TTG--TGACAGT-CTGGA-TAT-C-GACA-AACCCTG-TCCTC-ATTGT--CAAGGAT-C------T------CAACGGCG---CTT-CATATTTCA-AGGACCCGACACGT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGT--CCGA-GACCAGACG--G-CAA-GGCGATGTGGAA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCCCAC-ATTT-C-AAGGAT---A-CG-ATGGGCAGTTTA--TTTGAATTACCTG
gi|5 : GGAAG-TTTA----ACAGTGTAATGAGGT--TATAGTAAAAAGGTATATAAAGCGGG-CGCGAT-GCATTCTGTAGTCACTTT-CGACA-TCAT----TAGAA-CA-AGTTT-ACT-AGTGGACTT-C-ACGC-AGTT-ATA-TTGAAC-AGCG-ATTGAGA--TGTTTTGAAT-GAATCA-G--CT-GAA-CAGAC---AA--C-GGCAG-CGTCGAATTACAACCTCC--GCAGAGA-GAA--CAACG-G-G-ACCT-AC-GT-TT-TACAAGCGG-GGAAGGCG-GCAAAAA---GAAAC------TCAATTTCGGATTATTAC---AAAATATTCAAC-TGGAACGGACAGGCGTCAAT-C----GGAAA-TTTAAAGT-CA-GGAAA-ATGTCTA-AATG---TTGCCATCAAGCCTATTCCAGAAGACAA-GAAG-AACATCA-GC-T-T-CAAATTCGTCG-CC-TCTTCC---GG-GAATATGC-T--AAAAT-TGAAA-C-A-GGAAATGCAG-TGCAAACCTAA-CGGA-TT-ATCT--ACGTTT-GAATATTCGGCA-C--C-CTCTCTGG-ATTTCTGA-TATTTG-GTATGAATT-AC-GCAG-TCAACACA-GCT-C----AACGAGGACAGAA-TTGCTGCAA---CAAA-TA-GAA-TCCG-TGCAAGCAATC-TAA-AA-GGAAT--CT-AATCAC----GACGGCGCGGTGCAGTTTTGATTTTTTCACAT-TGAAA---ATACC-ACAAGAGCAGGCGGAGG---GAGAT----CTAGA---AAA--CA-TCTGCATGCTGGTAA-AGTGAAAATTCAAGAC-TCC-AAGAGAGCGAT--CG-TT--CGC-ATTAACAACCCTAACGATTCAT----GTGTCT--CCCGGGCTATTGTTG-TAG-C-CGTC---ACA-AAG-C-AGAAATCAA-TGACCCG-CATGGGAAAC-A-AATGGA-AACGGCA-TGAGGCTTGGG-GATA-CACAGGCTCTCGAC-AGAAAA--CGAC-AAAGCGAGT-AGCCT-TGATT-GAACAGGGAGGG--GTGCTGGTCTATGAAATCAA-CCCGCGTGGGCCTCCGTGAATGGGG-G--AATAACACG-C-AGGCCTTTA-TCC-CCAATATCG-ATTGAAAAAT-ATTTCA-TTTAAAACGTAATG-CATCTCGTTT-GCG-ACT-GGATCCTA-T-TTACAAAGGAAGCAGGCGGAA-GGGA-CTTGTTTT-GAATAA-TCC-TGCTGGGATAA-CCGAG-CAATTAACGATGCCCAT-T-GTGTCTATGCACCGGAGTG-CGGAAA-TC-AATACTATTAGCTTTATTATTGCGGATG-TTGG--TTATAG-AAAT--TTG---AGA---TACA-CCGGAC--CGTCTGCTCTCATC-GTA-TGCT-CGTTTGT-GTTTA-CCGA-CACCCCCTGTACCCCAGACGGGACTCAGACGA--ATTGC--TCTCA-TTG-T-AAGGA-TTTTT-C-AGAAATGCGAACTTGCTAACC---AG--ACCATTT-AAAACC-CTACAGC-AAGCTAA-TAAAA-C-GA-CACGGT-GCTCACAGTT
gi|6 : TTGTTG-TAG-CGCGTC--TACA-CAC-CCAGAAATCAAATGACCCGGAATGGGAAAAGA-AATGGTTAC--GCA-TGATAAAGGGA-GATTTCA-AAACACTCGAT-CAGAAA--CGAG-AA-GCGA-T-AGCAT-TGATG-GAACAAGCTGGG-TGTGCT-----ATTAA-CCAA-CC-GTGCGGGCCAC-GTGAATGGGA-G-CAATTACA-A-C-AGGCGCTTGTCCC-GCAATATCG-CTTGAAAA-T-ATTTCAGTTCAAAACG-AATA-TATCTCGTTT-GTG-ACT-GGAAGCTA-T-TTACAAAGGA--CAGG-G-ATCGGGA-CTTGTTT--GAATA--TCC-TGCTGG-ATAAAC-GAG-CA-TTA-CGATGC--AT-T-GTCTCTATGG-CCGGAGTGACGGAAAATC-AATACTATT-GCG--ATTATTGCG-ATGGTTGG--CTACAG-TCACA-TTGAGAAGA---A-CATCCGGAC--CGT-TGCTCTCATC-G-ACTGCT-CGTTT---GTTTAGCCGAACACCCCCTGTACCCCGGACGGGACTCAGACGA--ATTGC--TCTCA-TTG-TAAAGGA-TTTTT-C-AGAAATGCA-GCTTGTT-ACC---AG-AACCATTT-AAAACC-CTACAGC-AG--TAA-TACAA-C-GACCACGGT-G--TGCAGTTTA----GGGCGCTGTGACGAGTGTCA-GAAATGGATGACCAAGAAA-TTAT-TAAAAGGAC-ACGCGTG-TGAAGG-TTAAACACAATGCCGC-A-TCTGTC-AAAAAGTCGT-CCCCATGCC-CCATCGCTGCTTTGTACAGATG-AAACCCA-AACCCAAGAAAGAAAAGG-AC-TTG-AAAATGTACAT--TTATTACG-ATTTTT-AAA-GCAGTCAAGAAA-AC-GGCA-TA-CACAC--T-CCAAAT-CTAT-GCGT-GGC--AG-ATCGTGT--GTGTCA-----AC-A-TTG--CGACAGT-TTGGA-TAT-C-GACACCCCCCTG-TCCTC-ATTGT--ATAGGA--T------T------CAACTGTG---CTT-TATATTTCA-AGGACCCGACACAT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGT--CCGA-GACC-GACGA-G-CAA-GGCTATGTGGAA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCACACAATTT-CAAAGGAT---A-CG-ATGGACAGTTTA-TTTTGAATTACCTG
gi|7 : ggCG-ATTGAAAA-T-ATTTCAGTTCAAAACG-AAAA-CATCTCATT--AAG-ACT-GGAACCTA-T-TTACAAAAGA--CAGG-GGA-CGGGA-CTTACTT--AAATA--TCC-TGCAGG-ATAA-T-GAG-CA-TTA-CGATAGC-AT-T-GTCTCTATGA-CCGGAGTGACAGAAAATC-AATACTATT-GCG--AT----------A-TTGG--CTATAG-AAATA-TTAA--AGA---T-CA-CCGGAC--TGTCTGTTTTCATC-G-A-TGCT-CGTTT-T-GTTTAGCCGA-TACCCCCTGTACCCCGGACGGGACTCAAACGG--ATTGC--CTGCA-TTG-TAAGGGA-TTTTT-T-AGAAATGCG-GCTTGCT-ACC---AG-AACCATTT-CCAACC-CCACAGC-AG--TAG-TACAA-C-CACCACGGT-A--TGCAGTTTAAGG-GGTCGCTGCGACGAGTGCCA-GAAATGGATGCCCAAGCAA-TTAT-TACGAGGCC-ACGCTTG-TGGAGG-TCAAACACAGTGCCAC-A-TCTGTC-AAAAAGTCGT-CGCCATGCC-CCATCACTGCTTTGTACAGATG--AACCCA-AACCTAAAAAGGAAAAGG-AC-TTG-AAAATGTAAAT--TTATTACG-ATTTCG-AAT-CCAGCCAGGAAA-AC-GGAA-TT-CACA---TCCCCAAT-TTAT-GCGT-GGC--AG-ATCGTGT--GTGTCA-----AT-A-TTG--TGACAGT-TTGGA-TAT-C-GAAA-AGCCCCG-TCCTC-ATTGT--ATAGGAT-T------TGGATCGCAACGGCG---CTT-CCTATTTCA-AGGACTCGACACGT-T--AAAACACT---TTATG-GAATGGCTCTTACAGT--CAGA-GACC-GACCA-G-AAA-GGCTATGTGGGA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCACACAATTT-CAAAGGAT---A-CG-ATGGGCAGTTTA-TTTTGAATTACCTGgttcacacggcttgtatcaaacccaccgtcatcctgaacggcagtaaaatcttatccatgcaaatcttggggttgtgattcatcgattcttacaactttctgccctttgccctcgctaagatgccatctgcttccggattaaccgagctgaaaaaagggtatttccctcactttttcaacacgacagagaaccagtattacgtgggtccttaccccgccgctcatttctacaatcctgacgatatgtccactgccaatcgtgaagctttcta
gi|8 : CGGAAG-ACTG----GTA-----ATGAGGTGCTACAG-------GTATATAAAGCGGGGCGCAGTTGCTATG-CCAGTCACTTTTCGACA-TCATGGT-CAGGATCACAGTTA-CCT-AGTGGACTTTCCACGCCAGTTTATA-TTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-GA-TCA-GAACT-GAA-CAGACCCCAA--C-CGCAG-CGT-GAATTA-AAC-TTCCGGCAGAGA-GAGCTCAACG-GCGTAC-T-ACAATATTCTA-A-GCGGAGGAGGG-G-GAAAAAAAAGGAAACCGAACTTCA-TTT-GGATTTTTACTCAAAAAT--TCAAC-TGGAACGAT--GGCGTCAATTC-ACGGAAA--TTTAAAGTTCAAGGAAA-ATGTCTACAATG---TTGCCATCAAGCCCATCCCGGA-GA-AA-GAA--AATA-CA-GCCTGT-CA--TTCGTCG-CC-TCTTCG---GG-GA-TATGCGTTAATAATGTGAAAAC-AGGGAAATGCAGTTGCAACCC--A-TA-ATTT-ATCT--ACGTTTGGAATATTCGGCACC--C-GTCTCTGG-ACT-TTGA--ATTTGAGTATGAA-TTACTACAGTTCAAAACAGGCTCT----AACGAGGACAAAA-TT-CTG-AATACCAAAATA-GAA-TCGG-TGCA-GCAATC-TAACAAAGGAATTCCT-AATCAC---AAGAGGGGCCGTGCAGTTT-GA----TTC-CATGTT-CA---ATACCC-C-AG-GCAG-CGGAGG---GAGAT----CAG-A---AAA--CA-TCTGCATGTGGATAA-AGAGAAATTCAAAAAC-TCCAAAGAGAGCGATTCTG-TTA-CGC-ATTCAAAATCCTGA-GATTCA--T--GTGTCTACCCCGGCCT-TTGTAG-TGG-TGCGGCGTTACA-TAG-CCAGAAATCAAAT-ACCTGGCgttcacacagcttgtatcaaacctaccgtcatcgtcaacggcagtgaaatcttatccatgcaagttttggggttgggattcatcgattctcataactttctgccctttgccctagctaagatgccctctgttttcggattaaacgagctgaaaaaaggatatttccctcactttttcaacacgacagaaaaccagcattacgtgggtccttaccacgccc
gi|9 : A--CA-TCTGCATGTGAATAA-GGAAAAATTCAAAAAC-TGC-AAGAGGGCGAT--CG-TT--CGC-ATTCAAAATCCTGAGGATTCTC-T--CTGCTTGCCCCAGGCTATTGTTG-TAG-CGCGTC--TACA-CAG-CCAGAAATCAAACGACCCGGCATGGGAAACGA-AATGGAAAC--GGA-TGAGGCTTGGG-GATA-CACAGGCTTTCGAT-CAGAAA--CGAC-AA-GCGA-T-AGCGC-TGATT-GAACAAGCTGAG-TGTCCT-----ATGAA-CTAA-CC-GTGTGGGCAAC-GTGAATGGGG-G-AAATTACA-G-C-AGGCGCTTC-CCC-GCAATATCG-ATTGAAAA-T-ATTTTAATTCAAAACG-AATA-CAGCTCCTTT-GCG-ATT-GGAACCTA-T-TTACAAAGGA--CAGG-GT-ACGGGA-CTTGTTT--GAATA--TCC-TGCTTG-ATAA-C-GAG-CA-TTA-CGATACC-AT-T-GTGTCTACGC-CCGGAGTGACGGAAAATC-AACACTATT-GCG--ATTATTCCG-ATG-T
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CAGAGAACCAGCAGTATGTGGGTCCTTACCGAGCCGCTCATTTCTAC
Alignments
lowQualScore : 33333333 22 4444444 11 111 111 111111 111 22 111 11 1111 1 1 222222 111 1111 111111 1111 1111 111 11 11 11111 1 1 111 11 11 1 11111 111 111 1 11 11111 1 11 3333333333333333 11 111 111
lowQualScore : 8 88888888 22 6666666 6 0 6 99 6 6 888 55 6 6 6 5 5 5 5 5 5 77 5 5 5 5 77 5 5 000 77 5 5 5 777 5 77 5 5 5 5 6 6 3 6 6 6 777 1 111 999999 6 888 99 6 99 6 6 22 6 6 111 4 6 6 6 55 6 6 6 6 99 6 6 4444 6 6 999 6 1 6 6 6 9 6 6 6 6 99 6 888 99 6 6 5 5 5 5 5 3 111111 6 6 6 111 6 6 6 6 6 6 6 4444 1 6 7 6 777777 5 6 6 44 4444 4444 6 111 77 5 3 5 1 1 4 5 5 77 5 33 5 4 9999 1 0 4 8 22 4 4 0 0 5 44 66 0 5 1 777 5 5 2 1 0 5 66 5 5 5 5 5 5 1 88 22222 5 5 5 666 5 5 0 5 5 0 5 4 4 4 1 8 4 4 4 4 4 4 66 5 111 5 11 11 5 5 5 5 5 5 5 555 5 5 1 5 5 5 66 5 0 77 5 5 77 88888 5 77 4 5 5 5 5 999 5 0 77 77 5 5 5 5 5 77 5 000 5 5 5 5 77 5 5 5 5 77 5 6 5 3 5 6 6 0 6 6 888 6 6 6 6 6 6 6 6 99 6 6 6 5 5 5 5 555 5 5 0 1 5 55 5 66 22222 5 5 66 5 0 5 5 5 1 5 5 11 1 9999999999999999 888 5 2 5 2 5 33 000 5 77 5 5 5 5 5 1 77 5 77 5 5 5 5 5 0 5 5 000 5 5 6
lowQualScore : . ........ .. ....... . . . .. . . ... .. . . . . . . . . . .. . . . . .. . . ... .. . . . ... . .. . . . . . . . . . . ... . ... ...... . ... .. . .. . . .. . . ... . . . . .. . . . . .. . . .... . . ... . . . . . . . . . . .. . ... .. . . . . . . . . ...... . . . ... . . . . . . . .... . . . . ...... . . . .. .... .... . ... .. . . . . . . . . .. . .. . . .... . . . . .. . . . . . .. .. . . . ... . . . . . . .. . . . . . . . .. ..... . . . ... . . . . . . . . . . . . . . . . . . .. . ... . .. .. . . . . . . . ... . . . . . . .. . . .. . . .. ..... . .. . . . . . ... . . .. .. . . . . . .. . ... . . . . .. . . . . .. . . . . . . . . . . ... . . . . . . . . .. . . . . . . . ... . . . . . .. . .. ..... . . .. . . . . . . . . .. . ................ ... . . . . . .. ... . .. . . . . . . .. . .. . . . . . . . . ... . . .
lowQualScore : 0 22222222 77 8888888 7 7 7 22 7 7 333 88 7 7 7 7 7 7 7 7 7 99 7 7 7 7 99 7 7 000 99 7 7 7 000 7 99 7 7 7 7 7 7 7 7 7 7 555 5 777 222222 7 333 22 7 22 7 7 22 7 7 777 2 7 7 7 88 7 7 7 7 22 7 7 2222 7 7 222 7 3 7 7 7 3 7 7 7 7 22 7 333 22 7 7 7 7 7 7 7 3 888888 7 7 7 777 7 7 7 7 7 7 7 8888 0 7 3 7 222222 7 7 7 22 2222 2222 7 777 99 7 6 7 7 7 3 7 7 99 7 66 7 3 0000 4 1 4 9 22 4 4 1 2 0 66 99 8 0 0 666 0 0 5 4 2 0 99 0 0 0 0 0 0 0 22 55555 0 0 0 999 0 0 0 0 0 0 0 4 4 4 4 9 4 4 4 4 4 4 99 0 000 0 99 99 0 0 0 0 0 0 0 666 0 0 4 0 0 0 99 0 0 99 7 7 99 33333 7 99 3 7 7 7 7 444 7 7 99 99 7 7 7 7 7 11 7 000 7 7 7 7 99 7 7 7 7 99 0 7 7 9 7 7 7 7 7 7 333 7 7 7 7 7 7 7 7 22 7 7 7 7 7 7 7 777 7 7 1 4 7 77 7 99 55555 0 0 99 0 0 0 0 0 4 0 0 99 0 0000000000000000 888 0 0 0 5 7 66 000 7 99 7 7 7 7 7 3 99 7 99 7 7 7 7 7 7 0 7 000 7 7 7
consensus : GCGGAAG-TTTA-----GTAATGAGGT-CTACAGTA-----GTATATAAAGCGGGGCGCGGT-GCATTG-GCAGTCACTTT-CGACA-TCATG-T-CAGA--CA-AGTTA-CCT-AGTGGACTT-CCACGC-AGTT-ATA-TTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-GA-TCA-G--CT-GAA-CAGAC---AA--C-GGCAG-CGT-GAATTACAAC-TCC--GCAGAGA-GAA-TCAACG-GCG-AC-T-ACAGTATT-TACA-GCGG-GGAGGG-G-GAAAAAA---GAAAC------TCA-TTTCGGATTATTAC---AAAAT--TCAAC-TGGAACGAG--GGCGTCAAT-C-ACGGAAAA-TTTAAAGT-CAAGGAAA-ATGTCTACAATG---TTGCCATCAAGCCTATCCCGGA-GA-AA-GAA--AACA-CA-GCCT-T-CA--TTCGTCG-CC-TCTTCC---GG-GA-TATGC-TNAAAAATGTGAAAAC-A-GGAAATGCAG-TGCAACCCCAA-TG-A-TT-ATCT--ACGTTT-GAATATTCGGCA-C--C-GTCTCTGG-ACT-CTGA-TATTTG-GTATGAATTTAC-GCAG-TCAAAACA-GCT-N----AACGAGGACAAAA-TT-CTG-AA---CAAAATA-GAA-TCCG-TGCA-GCAATC-TAA-AAAGGAATTCCT-AATCAC---AGACGGGGCCGTGCAGTTT-GATTTTTTC-CATGTGAAA---ATACCCACAAG-GCAG-CGGAGG---GAGAT----CTA-A---AAA--CA-TCTGCATGTGGATAA-AGAGAAATTCCAAAAC-TCC-AAGAGAGCGAT--CG-TT--CGC-ATTCAAAATCCTGACGATTCAT-T--GTGTCTACCCCGGGCTATTGTGG-TAG-CGCGTC--TACA-CAG-CCAGAAATCAAATGACCCGGCATGGGAAACGA-AATGGNTAA--GAA-TGNGGNANGGG-GATA-CACAGACTCTCGAC-CAGAAA--CGAC-AA-GCGA-T-AGCCT-TGATG-GAACAAGCNGGG-TGTGCT-----ATGAA-CCAA-CC-GTGTGGGCCTC-GTGAATGGGG-G-CAATTACA-G-C-AGGCGCTCG-CCC-GCAATATCG-ATTGAAAA-T-ATTTCAATTCAAAACG-AATA-CATCTCGTTT-GCG-ACT-GGAACCTA-T-TTACAAAGGA--CAGG-GGAACGGGA-CTTGTTT--GAATA--TCC-TGCTGG-ATAA-C-GAG-CA-TTA-CGATGCC-AT-T-GTCTCTATGC-CCGGAGTGACGGAAAATC-AATACTATT-GCG--ATTATTGCG-ATG-TTGG--TTATAG-AAATA-TTGA--AGA---T-CA-CCGGAC--CGTGTGTCCTCATC-G-A-TGCT-CGTTT-T-GTTTAGCCGA-CACCCCCTGTACCCCGGACGGGACTCAGACGA--ATTGC--CCTCA-TTG-TAAAGGA-TTTTT-C-AGAAATGCG-GCTTGTT-ACC---AG-AACCATTT-AAAACC-CTACAGC-AG--TAA-TACAA-C-GACCACGGT-G--TGCAGTTTAATG-GGGCGCTGTGACCAGTGTAA-GAAATGGATGTCCAAGCAA-TTAT-TAAAACGCC-ACGCTTG-TGGAGG-TCAAACACAATGCCGC-A-TCTGTC-AAAAAGTCGT-CACCATGCC-TCATCACTGCTTTGTACAGACG-AAACCCA-AACCTAAGAAAGAAAAGG-AC-TTG-AAAATGTACAT--TTATTACG-ATTTTG-AAT-GCAGTCAGGAAA-AC-GGAA-TT-CACA---T-CCCAAT-TTAT-GCGT-GGC--AG-ATCGTGT--GTGTCA-----AC-A-TTG--CGACAGT-CTGGA-TAT-C-GACA-AGCCCTG-TCCTC-ATTGT--ANAGGAT-T------T------CAACGGCG---CTT-CATATTTCA-AGGACCCGACACGT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGT--CCGA-GACC-GACGA-G-CAA-GGCTATGTGGAA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCCCACAATTT-CAAAGGAT---A-CG-ATGGGCAGTTTA-TTTTGAATTACCTG
Reference ( family-4236 ) : GCGGAAG-TTTA-----GTAATGAGGT-CTACAGTA-----GTATATAAAGCGGGGCGCGGT-GCATTG-GCAGTCACTTT-CGACA-TCATG-T-CAGA--CA-AGTTA-CCT-AGTGGACTT-CCACGC-AGTT-ATA-TTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-GA-TCA-G--CT-GAA-CAGAC---AA--C-GGCAG-CGT-GAATTACAAC-TCC--GCAGAGA-GAA-TCAACG-GCG-AC-T-ACAGTATT-TACA-GCGG-GGAGGG-G-GAAAAAA---GAAAC------TCA-TTTCGGATTATTAC---AAAAT--TCAAC-TGGAACGAG--GGCGTCAAT-C-ACGGAAAA-TTTAAAGT-CAAGGAAA-ATGTCTACAATG---TTGCCATCAAGCCTATCCCGGA-GA-AA-GAA--AACA-CA-GCCT-T-CA--TTCGTCG-CC-TCTTCC---GG-GA-TATGC-TNAAAAATGTGAAAAC-A-GGAAATGCAG-TGCAACCCCAA-TG-A-TT-ATCT--ACGTTT-GAATATTCGGCA-C--C-GTCTCTGG-ACT-CTGA-TATTTG-GTATGAATTTAC-GCAG-TCAAAACA-GCT-N----AACGAGGACAAAA-TT-CTG-AA---CAAAATA-GAA-TCCG-TGCA-GCAATC-TAA-AAAGGAATTCCT-AATCAC---AGACGGGGCCGTGCAGTTT-GATTTTTTC-CATGTGAAA---ATACCCACAAG-GCAG-CGGAGG---GAGAT----CTA-A---AAA--CA-TCTGCATGTGGATAA-AGAGAAATTCCAAAAC-TCC-AAGAGAGCGAT--CG-TT--CGC-ATTCAAAATCCTGACGATTCAT-T--GTGTCTACCCCGGGCTATTGTGG-TAG-CGCGTC--TACA-CAG-CCAGAAATCAAATGACCCGGCATGGGAAACGA-AATGGNTAA--GAA-TGNGGNANGGG-GATA-CACAGACTCTCGAC-CAGAAA--CGAC-AA-GCGA-T-AGCCT-TGATG-GAACAAGCNGGG-TGTGCT-----ATGAA-CCAA-CC-GTGTGGGCCTC-GTGAATGGGG-G-CAATTACA-G-C-AGGCGCTCG-CCC-GCAATATCG-ATTGAAAA-T-ATTTCAATTCAAAACG-AATA-CATCTCGTTT-GCG-ACT-GGAACCTA-T-TTACAAAGGA--CAGG-GGAACGGGA-CTTGTTT--GAATA--TCC-TGCTGG-ATAA-C-GAG-CA-TTA-CGATGCC-AT-T-GTCTCTATGC-CCGGAGTGACGGAAAATC-AATACTATT-GCG--ATTATTGCG-ATG-TTGG--TTATAG-AAATA-TTGA--AGA---T-CA-CCGGAC--CGTGTGTCCTCATC-G-A-TGCT-CGTTT-T-GTTTAGCCGA-CACCCCCTGTACCCCGGACGGGACTCAGACGA--ATTGC--CCTCA-TTG-TAAAGGA-TTTTT-C-AGAAATGCG-GCTTGTT-ACC---AG-AACCATTT-AAAACC-CTACAGC-AG--TAA-TACAA-C-GACCACGGT-G--TGCAGTTTAATG-GGGCGCTGTGACCAGTGTAA-GAAATGGATGTCCAAGCAA-TTAT-TAAAACGCC-ACGCTTG-TGGAGG-TCAAACACAATGCCGC-A-TCTGTC-AAAAAGTCGT-CACCATGCC-TCATCACTGCTTTGTACAGACG-AAACCCA-AACCTAAGAAAGAAAAGG-AC-TTG-AAAATGTACAT--TTATTACG-ATTTTG-AAT-GCAGTCAGGAAA-AC-GGAA-TT-CACA---T-CCCAAT-TTAT-GCGT-GGC--AG-ATCGTGT--GTGTCA-----AC-A-TTG--CGACAGT-CTGGA-TAT-C-GACA-AGCCCTG-TCCTC-ATTGT--ANAGGAT-T------T------CAACGGCG---CTT-CATATTTCA-AGGACCCGACACGT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGT--CCGA-GACC-GACGA-G-CAA-GGCTATGTGGAA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCCCACAATTT-CAAAGGAT---A-CG-ATGGGCAGTTTA-TTTTGAATTACCTG
gi|1 : GAAGATTTA-----G--GTGAGGT-CTACGGTA-----TTATA---AGCGGGGCGCAGT-GCATTG-GCAGTCACTTT-CGACA-TCATG-T-CAGA--CA-AGTTAACCT-AGTGGACTT-CCACGC-AGTT-ATA-T-GAAC-AGCG-ATGAAGA--T-TTTTGAATTGA-TCA-G--CT-GAA-CAGAC---AA--CCGGCAG-CGT-GAATTACAAC-TCC--GCAGAGA-GAA-TCAACG-GCG-AC-T-ACAGTATT-TACA-GCGG-GGAGGG-G-GGAAAAA----AAAC------TCA-TTTCGGAT-ATTA----AAAAT--TCAAC-TGGAACGAG--GGCGTCAAT-C-ACGGAAAAGTTTAAATT-CAAGGAAA--TGTCTACAATG---TTGCCATCAAACCTATCCCGGA-GA-AA-GAA--AACA-CA-GCCT-T-CA--TTCGTCG-CC-TCTTC----GG-GA-TATGC-TGAAAAATGTGAAA-C-A-GGAAATGCAG-TGCAACTCCAA-TG-A--T-ATCT--ACGTTT-GATTATTCGG---C--C-GTCTCTGG-ATT-CTGATTATTTG-GTATGAATTTAC-GC-G-TCAAAACT-GCT-G----AAC-AGGACAAAA-TT-CTG-AA---CAAAATA-G-A-TTCG-TGCA-GCAATC-TAA-AAAGAGATTTTT-GATC-CAGGAGACGGGA--GTGCAGTTT-GA-TTTTTC-CAAGTG-AA---ATATCCACAAG-GCAG-CGGGGGAAAGAGA-------A-A---AAA--CA-TCTGCATGTGGATAA-AGAGAAA-TCCAAGACTTCC-AAGAGAGCGAT--CGTTT--CGCAATCCAAAATCCT-ACGATTCAT-T--GTGTCTACCC--GGCTATTGTGG-TAGTCGCGTC--TACAGCAC-CCAGAAATCAAA-GATCCCGCATGGGAATCAATAATGGTTAA--GAA-TGCGG-AAGGA-GATA-CACAGAGTGTTGACACAGAAA--CAAC-AA-GCGA-T-AGCGC-TGATA-GAACAAGCGGGGTTGTGCT-----ATGAA-CCAA-CC-GTGTGGGCCTC-GTGAATGGGG-A-CAATTACAGG-CAAGGCGCTCG-TCC-CTAATATAG-A-TGAAGA-TAATTTCAATTTAAAACG-AATA-CATCTCGTTT-GCG-ACT-GGAAACTA-T-TTACAAGGAA--TGGG-GGACGGGGA-CTTGTTTTGAAATA--TCCTTGCTGG-ATAA-C-GAG-CA-TTA-CGATGCT-TTGT-GTCTCTATGC-CTGGAGTGACGGAAAATC-AATACTATT-GCG--ATTATTGCG-ATGTTTGG--TTATAG-AAATATTTGA--AGA---T-CA-CCGGAC--CGTGTGTCCTCATC-G-A-TGCT-CGTTT-T-GTTTAGCCG---ACCCCCTGTA--CCGGACGGGGCTCAGACGA--ATTGC--CTCTA-TTG-TAAAGGA-TTTTT-CAAGAAATGCA-GCTTGTT-ATC---AG-AACCATTT-AAAACC-CTACAAC-AG--TAA-TACAA-C-GACCACGGT-G--TGCAGTTTAATG-GGGCGCTGTGACCAGTGTAA-GAAATGGATGTCCAAACAA-T--T-TAAAACGCC-ATGCTTG-TGGAGG-TCAAACACAATG-CGCAA-TCTGTC-AAAAAGTCGT-CACCATGCC-TCATCACTGCTTTGTA-AGACG-AAACCCA-AACCTAAAGAAACAAAGG-AC-TTG-AAAATGTACAT--TTATTACG-A-TTTG-AAT-GCAGTCAGGAAA-AC-GGAA-TT-CACA---T-CCCAAT-T--T-GCGT-GGC--AGAAACGTGT--GTGTCA-----AC-ATTTG--CGACAGT-CTGGA-TAT-C-GACA-AGCCCTG-TCCTCAATTGTCAAAGGGAT-C------T------CAACGGCACGTCTT-CATATTTCA-GGGA-CTGCAACGT-T--AAAACAGT---TTATG-AATTG--TCTTACAGT--CCGA-GACC---CGACG-CAA-GGCGATGTGGAA--C-TCAAC--GACGATGCAAGCCACC-A-TC-A--TGCCCAC-ATTT-CAAAGGAT---A-CG-ATGGGCAGTTTA-TTTTGAATTACCTG
gi|10 : AGACAGGGAA-AC-GGAA-TTTCACA---C-CCCAAT-TCGTAGCGTAGGC--AG-ATCG-GT--GTGTCAGATCGACTC-TTGATCGACAAA-CTTTACTATTC-GACA-A--CCTGCTCTTC-ATTGT--ATAGGAT-T------TGGATCGCAACGCCG---CTT-CGTATTTCA-AGGAACAGACACGT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGT--CCGA-GGGC-GACGA-G-AAA-AGCTATGTGGAA--C-TCAAA--CACGATG-AAGCCAGC-A-TC-A-TTGCACACAATTT-CAAAGGAT---G-CG-ATGGGCAGTTTATTTTTAAATTACCTGgttcacaggcggtgtatcaaaccccgttatcctgattgggagtaaaatcttatccatgcaagtcttgggctgagatttatcgattcttacaactttctgccttttccctcgccaagatgcctctgctttcggcttaacggaattgaaaaaaggatattttcctcactttttcaaacacgaccgatgcaaccagcagtatgttggcgtctttacccgcccctcatttctacaatcctgatgatatgtctcgccgccaatctgtgaagcttct
gi|11 : CGATTCAT-T--GTGTCTACCACGGGCTATTGTGG-TAG-CGCGTC--TACA-CAC-CTCGAAATCAAATGACCTGGCATGGGAAACGA-AATGGAAAC--GGA-TGAGGCTTGGG-GATA-CACAGGCTCTCGAC-CAGAAA--CGAC-AA-GCGG-A-AGCCT-TGATG-GAACAAGCTGAG-TGTGCT-----ATGAA-TCAA-CC-GTGTG---------GAATGGGG-G-CAATTACA-G-C-AGGCGCTCGCCCC-GCAGTATCG-ATTGAAAA-T-ATTTCAATTCAAAACG-AATA-CATCTCGTTT-GCG-ACT-GGAACCTA-T-TTTCAAAGgttcgcacggcttgtatcaaacccaccgtcatcttcaacggcagtaaaatcttattcatgcaagtcttgcgtgtttgagattcgtcgattcttacaattttctgtccttggccctcgcc
gi|12 : GCGGAAA-TTTACAGT-GTAATGAGGT--TATAGTAAAA--GTATATAAAGCGGTGCGTGGT-GCATTT-GCAGTCACTTT-CGACA-TCATG-T-CAGA--CA-AGTTA-CCT-AGTGGACTT-CCACGC-AGTT-ATA-CTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-GA-TCA-G--CT-GAA-CAGAC---AA--C-GGGAG-CGT-GAATTAC---------------A-GAA-TCAACG-GTG-
gi|13 : tGTGT--GTGTCA-----AC-A-TTG--CGACAGT-TTGGA-TAA-C-GACA-AGTACTG-TCCTC-ATTGT--ATAGGAT-TTGGATGT------CAACGGCG---CTT-CATATTTCA-AGGACCC
gi|15 : TGACCAGTGTAG-GAAATGGATGTCCAAGCAC-TT
gi|16 : -CTGA-TATTTG-GTACGAATTTAC-GCAG-TCAAA
gi|2 : GACTT-CCACGC-AGTT-ATA-TTGAAC-AGCGGATTGAGAGCT-TTTTTAAT-GA-TCAAG--CT-GAAACAGAC---AA--C-GGCAAACGT-GAATTAACCC-TCT--GCAGAGA-GAA-TCAACG-GCG-AC-T-ACA-TATT-T-CA-GCGG-GGCGGG-G-GCAAAAA---GAA-C------TCA-TT-CGGATTATTAC---AA-----TCAAC-TG--ACGAG--GGCGTCAAT-C-ACGGAAA--TTTAA-GT-CAAGGAAA-ATGTATACAATG---TTTCCATCAAGCC-ATCCCGGA-GA-AAAGAA--AACA-CAAGCCT-T-CA--TTCGTCG-CC-TCTTCC---CG-GA-TATGC-TTAAAA-TGTTGAAACTA-GGAAATGCAG-TGCAACCC-AA-TG-A-TT-ATCT--ACGTTT-GAATATTCGGCA-CACC-GTCTCTGGCACT-CTGA-TATT-G-GTATGA-TTTAC-ACAG-TCAAAACAAGCT-TCAAAAACGAG-ACAAAACTT-CTG-AA---CAAAATAAGAA-TCCGCTGCA-GCA-TCGTAA-AAAGGAATTCCTTAATCAA---CGCCGGGGCCGTGCAGTTT-GATTTTTTC-CATGTGAAATTAATACCCA--AG-GCAG-CGG--------GCTTGCACTA-ACAAAAA--CAATCTCC-TGTGGATAA-AGA-AAATTC-AAAAC-TC--AAGAGAGCGAT--CG-TTTCCGC-ATT-ACAACCCTGACGATTCAT-T--GTGTCTACCCGGGGCTATTGTG--TAG-CGCGTC--TACA-CAGGCCAGAAATCAAATGACCCGGT-TAGGGAACGA-A-TGGCTAA--GAAATGCGGAAAAGGAGATT-CA-AAACTCTCGAC-CAGAAC--CGAG-AA-GCGA-TTAGCCTCTGATG-GAACAAGGTGGG--GTGCT-----ATGAA-TCAA-CC-GTGTGG-CCT--GTGAATGGGGAG-CAATCAGA-G-T-GTGCGCTCG-CCCCGCAGT-TCG--CTGAAAA-T-ATTT--ATTTAAAACG-AATAACATCTCGTTT-GCG-ACTTGGAAC-TA-TCTTACAAAGGA--CAGG-GGGACGGGAACTTGTTT--GAATA--TCC-TGCTGG-ATA--C-GAGGCA-T-A-CGATGCT--T-T-GTGT-TATGC-CCGGAGTGACG-AAAACA-AATACTATT-GCG--ATTATTGCG-ATG-TTGGGCTAACAG-TCACA-TTGA--AGAA--T-CA-TCAGACGCCGTGTGTCTCTATC-G-A-TGCTTCGTTT-TTGTTTAGCCGA-CACCCCCTGTAACCCGGACGGAACTCAGACGA--ATTGCCTCCTCATTTG-TAAAGGACTTTTT-C-AGAAATGCA-GCTTGTT-A-C---AG-A--CATTT-AAAACC-CTACAGCAAG--TAATTACAACC-GACCACGGT-G--T-CAG-TTAATG-GGGCGCTGTGACC-GTGTAA-GAAATGGATG----AGCACTTTAT-TAAAACGCCAATGCTTGCTGGAGG--CAAAC-TAATGCCG----TCTGTCAAAAAAGTCGTCCACCATGCC-TCCTCACTGCTTTGTACAG-CG-AAACCCA-AACCTAAAGAAGAAAAGG-ACTTTG-AACATGTACAT--TTTTTACGCATTTTGCCATGGCAGTCAGGAAA-AC-GGAA-TT-CACAATTT-CCCCAT-TTAT-GC-T-GGCAAAG-AACGTGTTGGTGTTC-----AC-A-TTG--CGACAGTCCTGGA-TAT-C-GACA-AGCCT---TCCTC-ATTGT--CAAGGA--T------T------CAACGGCG---CTT-T-CATTTCA-AGGACCCGACACGT-TAAAAAACAG----TTATG-GAATGGCTCTTACAGTTCCCG--GCCC-GACGA-G-CAA-GGCTATGTG--A--T-TC-AA--CACG-TG-AAGCCACCGA-TCAA-TTGCCCACAATTT-CAAA-GAT---ATCG-AAGGACAGTTTA-TTTTGAATTACCTG
gi|3 : TGAGGTGTTACAG-------GTA-ATAAAGCGGG-CGCAGG-CCATTG-GCACTCACTTT-CGACAATCATG-TTCAGA--CA-AGGTA-CCTGAGTGGACT--CCACGC-AGT--ATAGTTGAACCAGCG-ATTGAGA--T-TTTTGACT-GA-TCA-G--CTTGAA-CAGAC---AAAAC-GGCAG-CGT-GAATTACA-C-TCC--GCAGAGATGAA-TCA-CGAGCG-AC-TGACAGTATT-TACA-GCGG-GAGGGG-C-TAAAAAA---GAAAC-------CA-TTTCGGATTATTAC---AAAAT--TCAACGTGGA-CGAG--GGCGTCAAT-CCACGGAAAA-TTTAAAGT-CAAGGAAAGATGTC-ACAATGCCCTTGC-ATCAAACCCATCCGAGA-GA-AA-GAATAAATA-CA-GCCT-TTCA--TTCGTCGGCCGTCTTCCCGGGGCGA-TATGT-GAAGAAAT-TGAAAAC-A-AGAAGTGCAG-TGCAACCCCAAATG-A-TTGATCTTGACGTTT---ATATTCGG-A-C--CTGTCTCTGG-ACT-CTGA-TATTTG-GTATGAATTTAC-GCAG-TCAAA-CA-GCT-C----AACGAGGACAAAA-TT-CTG-AA---CAAAATA-GAA-TCCG-T-CA-GCAATC-TAA-AAAGGAATTCTA-AATCAC---AGACGGGGCCGTTCAGTTT-GATTTTTTC-CATGTG-AC---ATATCCACGAA-GCAG-CGGA-G---GAGAT----CTA-A---AAAACCA-TCTGCATGTG--TAACGGAAAAATTTCAGACT-TCC-AAGAGAGCGAT--CG-TT--CGC-ATGAAACAACCTGACGAGTCATGTTGGTGTCTACCCC-GGCTATTGGGGTTAG-CGCGTCTGTACA-CAG-CCGAGAATCAAATGACCCGGGCTGTGAAACAA-AATGGTTAA--GAA-TGCGGGAA-GG-AATA-CACAGAGTGT--GC-CAGAAAACCAACGAA-GCGA-T-AACCT-TGATGCGAACAAGCGGGG-T-TGCT-----AGGAA-CCAAGCC-GTGTGGG-CTC-GTGAATGGGG-ACCAATTACA-GAT-AGGCGCTCG-CCC-GCAATATCGTATTGAAGA-T-ATTTCAATTTAAAACGCAATA-CATCTCGTTTGGCGAACT-GGAACCTATT-TTACAAGGGA--CAGG-G--ACGGGA-GTTGTTT--GAATATTTCC-TGCTGG-ATAA-C-GAG-CA-TTA-CGATG-C-AT-TGGTCTCTATGC-CCGGAGTGACGG--AATCGAATACTATT-GCG--ATTATTGTG-ATG-TTGG--TTATAG-AAATA-TTGA--AGAGATC-CA-CCGGAC--CGTGTGTCCTCATCAG-A-GGCT-CATTT-T-GTTTAGC--A-CA-CCCCTGTACCC--GACGGGACTCAGACGGATATTG---TCTCA-TTG-TAAAGGA-TTTTTGC-AGAAATGCA-GCTTGTT-ACC---AGAAAACATCT-AGAACCGCTACAGC-AG--TAA-TACAA-CGGACCACGGT-G--TGCAG-TTAATGAGGGCGCTGTGACCAGTGTAAGGAAAT-GATGTCCAAACAA-TTATGTAAAACGTC-ATGCTTG-TGGAGGTTCAAATACAATGCCGC-AGTCTGTC--AAAAGTCGT-CACCATGCCTTCCTCACTGCTTGTTACAGACGAAAACCCATAACATAAGAAAGAAAAGGTAC-TTG-AAAATGTACATCCCTCTTACG-ATTTTG-AAT-GCAGTCAGGAAAGAC-GGAAGTT-CACA---T-CCCCATGTTATCGTGT-GGCAGAG-ATC-TG---GTGTCA-----AC-A-TTG--CGATAGT-TTAGATTAT-CGGACA-AGCCCTG--GCTC-ATTGTC-AAAGGATAC------T------CAACGGCG---CTTGCATATTTCATA----CCGACACGTGTA-AAAACAGTTTGTTATGCGAATGGCTCTTACAGT--CCGAGGACC-GACGA-GTCAAGGGCGATGTGGAAAGCGTCAAAACCAC-ATG-AAGCCACC-AGTC-ACTTGCCCACAATTTGCAAAGGATTAGA-CGAATGGgttcacacggcctgtatcaaactccgtcatcctcaacggcagtaaaatccttatccagaagtcttggggttgagattcatgcgattcttacaacttctctgccttttgctctcggccaagatgccctctgctttcggattaacggaattgaaaaaagatattagtcctcacttttcaacacgaccggagaaccagcagtattgggtccttaccccgcgctcatcttctacaatcctgacgattgtcgagaccaatcgtggaagccttcta
gi|4 : atttatgtGCGGAAG-TTTA-----G--GTGAGGT-CTACAG-------GTATATAAAGCGGGGCGCAGT-GCATTG--TAGTCACTTT-CGACA-TCATG-T-CAGA--CA-AGTTA-C-T-AGTG-ACTT-CCACGC-AGTT-ATA-TTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-GA-TCA-G--CT-GAA-CAGAC---AA--C-GGCAG-CGT-GAATTACAAC-TCC--GCAGAGA-GAA-TCAACG-GCG-AC-T-ACAATATT-TACA-GCGG-GGAGGG-GCAAAAAAA---GAAAC------TCA-TTTCGGATTATTACC--AAAAT--TCAAC-TGGAACGAG--GGCGTCAAT-C-ACGGAAA--TTTAAAGT-CAAGGAAA-ATGTCTACAATG---T-GCCATCAAGGCTATTCCAGA-GA-AA-GAA--AACA-CA-GCCT-T-CA--TTCGTCG-CC-TCTTCC---GG-GA-TATGC-TGAAAAATGTGAA--C-A-GGAAATGCAG-TGCAACCCCAA-TG-A-TT-ATCT--ACGTTT-GAATATTCGGCA-C--C-GTCTCTGG-ACT-CTGA-TATTTG-GTATGAATTTAC-GCAG-TCAAAACA-GCT-G----AACGAGGACAAAA-TT-CTG-AA---CAAAATA-GAAATCCG-TGCA-GCAATC-TAA-AAAGGAATTCCT-AATCAC---AGACGGG-CCGTGCAGTTT-GATTTTTTC-CATGTCAAA---ATACCCACAAG-GCAG-CGGAGG----AGAT----CTA-A---AAA--CA-TCTGCATGTGG-TAA-AGAGAAATTTCAAAAC-TCC-AAGAGAGCGAT--CG-TT--CGC-ATTCAAAATCCTGACGATTCAT-T--GTGTCTACCCCGGGCTATTGTGG-TAGACGCGAC--TACA-CAG-TCAGAAATCAAATGACCC-GCATGGGAAACGA-AATGGCTAA--GAA-TGCGGAAAGGA-GATA-CACGGAGTGTTGAC-CAGAAA--CAAC-AA-GCGA-T-AACCT-TGATG-GAACAAGCGGGG-TGTGCT-----ATGAA-TCAA-CC-GTGTGGGCCTT-GTGAATGGGC-G-CAATTACA-G-C-AGGCGCTTG-CCC-GCAGTATCG-ATTGAAAA-T-ATTTCAGTTCAAAACG-AATA-CATCTCGTTT-GCG-ACT-GGAACCTA-T-TTACAAAGGA--CAGG-GGAACGGGA-CTTGTTT--G-ATA--TCC-TGCTGG-ATAA-C-GAG-CA-TTA-CGATGCC-AT-T-GTTTCTATGG-CCGGAGTGACGGAAAATC-AATACTATT-GCG--ATTATTGCG-ATG-TTGG--TTATAGAAAATA-TTGA--AGA---T-CA-CCGGAC--CGTGTGTCCT-ATC-G-A-TGCT-CGTTT-T-GTTTAGCCGA-TACCCCCTGTACCCCAGACGGGACTCAGACGA--ATTGC--TCGCA-TTGTTAAAGGA-TTTTT-C-AGAAATGCA-GC-TGTT-ACCAAAAG-AACCATTTAAAAACC-CTACAGC-AG--TAA-TACAA-C-GACCACGGTGG--TGCAGTTTAATG-GGGCGCTGTGACCAGTGTAA-GAAATGGATGTCAAAGAAA-TTAT-TAAAACGCC-ATGCTTG-TGGAGG-TCAAATACAATGCCGC-A-TCTGTC-AAAAAGTCGT-CACCATGCC-TCATCACTGCTTTGTACAGACG-AAACCCA-AACCTAAGAAAGAAAAGG-AT-TTGAAAAATGTACAT--TTATTACG-ATTTTG-AAT-GCAGTCAGGAAA-ACGGGAA-TT-CACA---T-CCCAAT-TTAT-GTGT-GGC--AG-ATCGTGT--GTGTCA-----AC-A-TTG--TGACAGT-CTGGA-TAT-C-GACA-AACCCTG-TCCTC-ATTGT--CAAGGAT-C------T------CAACGGCG---CTT-CATATTTCA-AGGACCCGACACGT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGT--CCGA-GACCAGACG--G-CAA-GGCGATGTGGAA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCCCAC-ATTT-C-AAGGAT---A-CG-ATGGGCAGTTTA--TTTGAATTACCTG
gi|5 : GGAAG-TTTAACAGTGTAATGAGGT--TATAGTAAAAAGGTATATAAAGCGGG-CGCGAT-GCATTCTGTAGTCACTTT-CGACA-TCAT----TAGAA-CA-AGTTT-ACT-AGTGGACTT-C-ACGC-AGTT-ATA-TTGAAC-AGCG-ATTGAGA--TGTTTTGAAT-GAATCA-G--CT-GAA-CAGAC---AA--C-GGCAG-CGTCGAATTACAACCTCC--GCAGAGA-GAA--CAACG-G-G-ACCT-AC-GT-TT-TACAAGCGG-GGAAGGCG-GCAAAAA---GAAAC------TCAATTTCGGATTATTAC---AAAATATTCAAC-TGGAACGGACAGGCGTCAAT-C----GGAAA-TTTAAAGT-CA-GGAAA-ATGTCTA-AATG---TTGCCATCAAGCCTATTCCAGAAGACAA-GAAG-AACATCA-GC-T-T-CAAATTCGTCG-CC-TCTTCC---GG-GAATATGC-T--AAAAT-TGAAA-C-A-GGAAATGCAG-TGCAAACCTAA-CGGA-TT-ATCT--ACGTTT-GAATATTCGGCA-C--C-CTCTCTGG-ATTTCTGA-TATTTG-GTATGAATT-AC-GCAG-TCAACACA-GCT-C----AACGAGGACAGAA-TTGCTGCAA---CAAA-TA-GAA-TCCG-TGCAAGCAATC-TAA-AA-GGAAT--CT-AATCAC----GACGGCGCGGTGCAGTTTTGATTTTTTCACAT-TGAAA---ATACC-ACAAGAGCAGGCGGAGG---GAGAT----CTAGA---AAA--CA-TCTGCATGCTGGTAA-AGTGAAAATTCAAGAC-TCC-AAGAGAGCGAT--CG-TT--CGC-ATTAACAACCCTAACGATTCAT----GTGTCT--CCCGGGCTATTGTTG-TAG-C-CGTC---ACA-AAG-C-AGAAATCAA-TGACCCG-CATGGGAAAC-A-AATGGA-AACGGCA-TGAGGCTTGGG-GATA-CACAGGCTCTCGAC-AGAAAA--CGAC-AAAGCGAGT-AGCCT-TGATT-GAACAGGGAGGG--GTGCTGGTCTATGAAATCAA-CCCGCGTGGGCCTCCGTGAATGGGG-G--AATAACACG-C-AGGCCTTTA-TCC-CCAATATCG-ATTGAAAAAT-ATTTCA-TTTAAAACGTAATG-CATCTCGTTT-GCG-ACT-GGATCCTA-T-TTACAAAGGAAGCAGGCGGAA-GGGA-CTTGTTTT-GAATAA-TCC-TGCTGGGATAA-CCGAG-CAATTAACGATGCCCAT-T-GTGTCTATGCACCGGAGTG-CGGAAA-TC-AATACTATTAGCTTTATTATTGCGGATG-TTGG--TTATAG-AAAT--TTG---AGA---TACA-CCGGAC--CGTCTGCTCTCATC-GTA-TGCT-CGTTTGT-GTTTA-CCGA-CACCCCCTGTACCCCAGACGGGACTCAGACGA--ATTGC--TCTCA-TTG-T-AAGGA-TTTTT-C-AGAAATGCGAACTTGCTAACC---AG--ACCATTT-AAAACC-CTACAGC-AAGCTAA-TAAAA-C-GA-CACGGT-GCTCACAGTT
gi|6 : TTGTTG-TAG-CGCGTC--TACA-CAC-CCAGAAATCAAATGACCCGGAATGGGAAAAGA-AATGGTTAC--GCA-TGATAAAGGGA-GATTTCA-AAACACTCGAT-CAGAAA--CGAG-AA-GCGA-T-AGCAT-TGATG-GAACAAGCTGGG-TGTGCT-----ATTAA-CCAA-CC-GTGCGGGCCAC-GTGAATGGGA-G-CAATTACA-A-C-AGGCGCTTGTCCC-GCAATATCG-CTTGAAAA-T-ATTTCAGTTCAAAACG-AATA-TATCTCGTTT-GTG-ACT-GGAAGCTA-T-TTACAAAGGA--CAGG-G-ATCGGGA-CTTGTTT--GAATA--TCC-TGCTGG-ATAAAC-GAG-CA-TTA-CGATGC--AT-T-GTCTCTATGG-CCGGAGTGACGGAAAATC-AATACTATT-GCG--ATTATTGCG-ATGGTTGG--CTACAG-TCACA-TTGAGAAGA---A-CATCCGGAC--CGT-TGCTCTCATC-G-ACTGCT-CGTTT---GTTTAGCCGAACACCCCCTGTACCCCGGACGGGACTCAGACGA--ATTGC--TCTCA-TTG-TAAAGGA-TTTTT-C-AGAAATGCA-GCTTGTT-ACC---AG-AACCATTT-AAAACC-CTACAGC-AG--TAA-TACAA-C-GACCACGGT-G--TGCAGTTTA----GGGCGCTGTGACGAGTGTCA-GAAATGGATGACCAAGAAA-TTAT-TAAAAGGAC-ACGCGTG-TGAAGG-TTAAACACAATGCCGC-A-TCTGTC-AAAAAGTCGT-CCCCATGCC-CCATCGCTGCTTTGTACAGATG-AAACCCA-AACCCAAGAAAGAAAAGG-AC-TTG-AAAATGTACAT--TTATTACG-ATTTTT-AAA-GCAGTCAAGAAA-AC-GGCA-TA-CACAC--T-CCAAAT-CTAT-GCGT-GGC--AG-ATCGTGT--GTGTCA-----AC-A-TTG--CGACAGT-TTGGA-TAT-C-GACACCCCCCTG-TCCTC-ATTGT--ATAGGA--T------T------CAACTGTG---CTT-TATATTTCA-AGGACCCGACACAT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGT--CCGA-GACC-GACGA-G-CAA-GGCTATGTGGAA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCACACAATTT-CAAAGGAT---A-CG-ATGGACAGTTTA-TTTTGAATTACCTG
gi|7 : ggCG-ATTGAAAA-T-ATTTCAGTTCAAAACG-AAAA-CATCTCATT--AAG-ACT-GGAACCTA-T-TTACAAAAGA--CAGG-GGA-CGGGA-CTTACTT--AAATA--TCC-TGCAGG-ATAA-T-GAG-CA-TTA-CGATAGC-AT-T-GTCTCTATGA-CCGGAGTGACAGAAAATC-AATACTATT-GCG--AT----------A-TTGG--CTATAG-AAATA-TTAA--AGA---T-CA-CCGGAC--TGTCTGTTTTCATC-G-A-TGCT-CGTTT-T-GTTTAGCCGA-TACCCCCTGTACCCCGGACGGGACTCAAACGG--ATTGC--CTGCA-TTG-TAAGGGA-TTTTT-T-AGAAATGCG-GCTTGCT-ACC---AG-AACCATTT-CCAACC-CCACAGC-AG--TAG-TACAA-C-CACCACGGT-A--TGCAGTTTAAGG-GGTCGCTGCGACGAGTGCCA-GAAATGGATGCCCAAGCAA-TTAT-TACGAGGCC-ACGCTTG-TGGAGG-TCAAACACAGTGCCAC-A-TCTGTC-AAAAAGTCGT-CGCCATGCC-CCATCACTGCTTTGTACAGATG--AACCCA-AACCTAAAAAGGAAAAGG-AC-TTG-AAAATGTAAAT--TTATTACG-ATTTCG-AAT-CCAGCCAGGAAA-AC-GGAA-TT-CACA---TCCCCAAT-TTAT-GCGT-GGC--AG-ATCGTGT--GTGTCA-----AT-A-TTG--TGACAGT-TTGGA-TAT-C-GAAA-AGCCCCG-TCCTC-ATTGT--ATAGGAT-T------TGGATCGCAACGGCG---CTT-CCTATTTCA-AGGACTCGACACGT-T--AAAACACT---TTATG-GAATGGCTCTTACAGT--CAGA-GACC-GACCA-G-AAA-GGCTATGTGGGA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCACACAATTT-CAAAGGAT---A-CG-ATGGGCAGTTTA-TTTTGAATTACCTGgttcacacggcttgtatcaaacccaccgtcatcctgaacggcagtaaaatcttatccatgcaaatcttggggttgtgattcatcgattcttacaactttctgccctttgccctcgctaagatgccatctgcttccggattaaccgagctgaaaaaagggtatttccctcactttttcaacacgacagagaaccagtattacgtgggtccttaccccgccgctcatttctacaatcctgacgatatgtccactgccaatcgtgaagctttcta
gi|8 : CGGAAG-ACTG-----GTAATGAGGTGCTACAG-------GTATATAAAGCGGGGCGCAGTTGCTATG-CCAGTCACTTTTCGACA-TCATGGT-CAGGATCACAGTTA-CCT-AGTGGACTTTCCACGCCAGTTTATA-TTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-GA-TCA-GAACT-GAA-CAGACCCCAA--C-CGCAG-CGT-GAATTA-AAC-TTCCGGCAGAGA-GAGCTCAACG-GCGTAC-T-ACAATATTCTA-A-GCGGAGGAGGG-G-GAAAAAAAAGGAAACCGAACTTCA-TTT-GGATTTTTACTCAAAAAT--TCAAC-TGGAACGAT--GGCGTCAATTC-ACGGAAA--TTTAAAGTTCAAGGAAA-ATGTCTACAATG---TTGCCATCAAGCCCATCCCGGA-GA-AA-GAA--AATA-CA-GCCTGT-CA--TTCGTCG-CC-TCTTCG---GG-GA-TATGCGTTAATAATGTGAAAAC-AGGGAAATGCAGTTGCAACCC--A-TA-ATTT-ATCT--ACGTTTGGAATATTCGGCACC--C-GTCTCTGG-ACT-TTGA--ATTTGAGTATGAA-TTACTACAGTTCAAAACAGGCTCT----AACGAGGACAAAA-TT-CTG-AATACCAAAATA-GAA-TCGG-TGCA-GCAATC-TAACAAAGGAATTCCT-AATCAC---AAGAGGGGCCGTGCAGTTT-GA----TTC-CATGTT-CA---ATACCC-C-AG-GCAG-CGGAGG---GAGAT----CAG-A---AAA--CA-TCTGCATGTGGATAA-AGAGAAATTCAAAAAC-TCCAAAGAGAGCGATTCTG-TTA-CGC-ATTCAAAATCCTGA-GATTCA--T--GTGTCTACCCCGGCCT-TTGTAG-TGG-TGCGGCGTTACA-TAG-CCAGAAATCAAAT-ACCTGGCgttcacacagcttgtatcaaacctaccgtcatcgtcaacggcagtgaaatcttatccatgcaagttttggggttgggattcatcgattctcataactttctgccctttgccctagctaagatgccctctgttttcggattaaacgagctgaaaaaaggatatttccctcactttttcaacacgacagaaaaccagcattacgtgggtccttaccacgccc
gi|9 : A--CA-TCTGCATGTGAATAA-GGAAAAATTCAAAAAC-TGC-AAGAGGGCGAT--CG-TT--CGC-ATTCAAAATCCTGAGGATTCTC-T--CTGCTTGCCCCAGGCTATTGTTG-TAG-CGCGTC--TACA-CAG-CCAGAAATCAAACGACCCGGCATGGGAAACGA-AATGGAAAC--GGA-TGAGGCTTGGG-GATA-CACAGGCTTTCGAT-CAGAAA--CGAC-AA-GCGA-T-AGCGC-TGATT-GAACAAGCTGAG-TGTCCT-----ATGAA-CTAA-CC-GTGTGGGCAAC-GTGAATGGGG-G-AAATTACA-G-C-AGGCGCTTC-CCC-GCAATATCG-ATTGAAAA-T-ATTTTAATTCAAAACG-AATA-CAGCTCCTTT-GCG-ATT-GGAACCTA-T-TTACAAAGGA--CAGG-GT-ACGGGA-CTTGTTT--GAATA--TCC-TGCTTG-ATAA-C-GAG-CA-TTA-CGATACC-AT-T-GTGTCTACGC-CCGGAGTGACGGAAAATC-AACACTATT-GCG--ATTATTCCG-ATG-T
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CAGAGAACCAGCAGTATGTGGGTCCTTACCGAGCCGCTCATTTCTAC
Alignments
lowQualScore : 33333333 22 4444444 11 111 111 111111 111 22 111 11 1111 1 1 222222 111 1111 111111 1111 1111 111 11 11 11111 1 1 111 11 11 1 11111 111 111 1 11 11111 1 11 3333333333333333 11 111 111
lowQualScore : 8 88888888 22 6666666 6 0 6 99 6 6 888 55 6 6 6 5 5 5 5 5 5 77 5 5 5 5 77 5 5 000 77 5 5 5 777 5 77 5 5 5 5 6 6 3 6 6 6 777 1 111 999999 6 888 99 6 99 6 6 22 6 6 111 4 6 6 6 55 6 6 6 6 99 6 6 4444 6 6 999 6 1 6 6 6 9 6 6 6 6 99 6 888 99 6 6 5 5 5 5 5 3 111111 6 6 6 111 6 6 6 6 6 6 6 4444 1 6 7 6 777777 5 6 6 44 4444 4444 6 111 77 5 3 5 1 1 4 5 5 77 5 33 5 4 9999 1 0 4 8 22 4 4 0 0 5 44 66 0 5 1 777 5 5 2 1 0 5 66 5 5 5 5 5 5 1 88 22222 5 5 5 666 5 5 0 5 5 0 5 4 4 4 1 8 4 4 4 4 4 4 66 5 111 5 11 11 5 5 5 5 5 5 5 555 5 5 1 5 5 5 66 5 0 77 5 5 77 88888 5 77 4 5 5 5 5 999 5 0 77 77 5 5 5 5 5 77 5 000 5 5 5 5 77 5 5 5 5 77 5 6 5 3 5 6 6 0 6 6 888 6 6 6 6 6 6 6 6 99 6 6 6 5 5 5 5 555 5 5 0 1 5 55 5 66 22222 5 5 66 5 0 5 5 5 1 5 5 11 1 9999999999999999 888 5 2 5 2 5 33 000 5 77 5 5 5 5 5 1 77 5 77 5 5 5 5 5 0 5 5 000 5 5 6
lowQualScore : . ........ .. ....... . . . .. . . ... .. . . . . . . . . . .. . . . . .. . . ... .. . . . ... . .. . . . . . . . . . . ... . ... ...... . ... .. . .. . . .. . . ... . . . . .. . . . . .. . . .... . . ... . . . . . . . . . . .. . ... .. . . . . . . . . ...... . . . ... . . . . . . . .... . . . . ...... . . . .. .... .... . ... .. . . . . . . . . .. . .. . . .... . . . . .. . . . . . .. .. . . . ... . . . . . . .. . . . . . . . .. ..... . . . ... . . . . . . . . . . . . . . . . . . .. . ... . .. .. . . . . . . . ... . . . . . . .. . . .. . . .. ..... . .. . . . . . ... . . .. .. . . . . . .. . ... . . . . .. . . . . .. . . . . . . . . . . ... . . . . . . . . .. . . . . . . . ... . . . . . .. . .. ..... . . .. . . . . . . . . .. . ................ ... . . . . . .. ... . .. . . . . . . .. . .. . . . . . . . . ... . . .
lowQualScore : 0 22222222 77 8888888 7 7 7 22 7 7 333 88 7 7 7 7 7 7 7 7 7 99 7 7 7 7 99 7 7 000 99 7 7 7 000 7 99 7 7 7 7 7 7 7 7 7 7 555 5 777 222222 7 333 22 7 22 7 7 22 7 7 777 2 7 7 7 88 7 7 7 7 22 7 7 2222 7 7 222 7 3 7 7 7 3 7 7 7 7 22 7 333 22 7 7 7 7 7 7 7 3 888888 7 7 7 777 7 7 7 7 7 7 7 8888 0 7 3 7 222222 7 7 7 22 2222 2222 7 777 99 7 6 7 7 7 3 7 7 99 7 66 7 3 0000 4 1 4 9 22 4 4 1 2 0 66 99 8 0 0 666 0 0 5 4 2 0 99 0 0 0 0 0 0 0 22 55555 0 0 0 999 0 0 0 0 0 0 0 4 4 4 4 9 4 4 4 4 4 4 99 0 000 0 99 99 0 0 0 0 0 0 0 666 0 0 4 0 0 0 99 0 0 99 7 7 99 33333 7 99 3 7 7 7 7 444 7 7 99 99 7 7 7 7 7 11 7 000 7 7 7 7 99 7 7 7 7 99 0 7 7 9 7 7 7 7 7 7 333 7 7 7 7 7 7 7 7 22 7 7 7 7 7 7 7 777 7 7 1 4 7 77 7 99 55555 0 0 99 0 0 0 0 0 4 0 0 99 0 0000000000000000 888 0 0 0 5 7 66 000 7 99 7 7 7 7 7 3 99 7 99 7 7 7 7 7 7 0 7 000 7 7 7
consensus : GCGGAAG-TTTA-----GTAATGAGGT-CTACAGTA-----GTATATAAAGCGGGGCGCGGT-GCATTG-GCAGTCACTTT-CGACA-TCATG-T-CAGA--CA-AGTTA-CCT-AGTGGACTT-CCACGC-AGTT-ATA-TTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-GA-TCA-G--CT-GAA-CAGAC---AA--C-GGCAG-CGT-GAATTACAAC-TCC--GCAGAGA-GAA-TCAACG-GCG-AC-T-ACAGTATT-TACA-GCGG-GGAGGG-G-GAAAAAA---GAAAC------TCA-TTTCGGATTATTAC---AAAAT--TCAAC-TGGAACGAG--GGCGTCAAT-C-ACGGAAAA-TTTAAAGT-CAAGGAAA-ATGTCTACAATG---TTGCCATCAAGCCTATCCCGGA-GA-AA-GAA--AACA-CA-GCCT-T-CA--TTCGTCG-CC-TCTTCC---GG-GA-TATGC-TNAAAAATGTGAAAAC-A-GGAAATGCAG-TGCAACCCCAA-TG-A-TT-ATCT--ACGTTT-GAATATTCGGCA-C--C-GTCTCTGG-ACT-CTGA-TATTTG-GTATGAATTTAC-GCAG-TCAAAACA-GCT-N----AACGAGGACAAAA-TT-CTG-AA---CAAAATA-GAA-TCCG-TGCA-GCAATC-TAA-AAAGGAATTCCT-AATCAC---AGACGGGGCCGTGCAGTTT-GATTTTTTC-CATGTGAAA---ATACCCACAAG-GCAG-CGGAGG---GAGAT----CTA-A---AAA--CA-TCTGCATGTGGATAA-AGAGAAATTCCAAAAC-TCC-AAGAGAGCGAT--CG-TT--CGC-ATTCAAAATCCTGACGATTCAT-T--GTGTCTACCCCGGGCTATTGTGG-TAG-CGCGTC--TACA-CAG-CCAGAAATCAAATGACCCGGCATGGGAAACGA-AATGGNTAA--GAA-TGNGGNANGGG-GATA-CACAGACTCTCGAC-CAGAAA--CGAC-AA-GCGA-T-AGCCT-TGATG-GAACAAGCNGGG-TGTGCT-----ATGAA-CCAA-CC-GTGTGGGCCTC-GTGAATGGGG-G-CAATTACA-G-C-AGGCGCTCG-CCC-GCAATATCG-ATTGAAAA-T-ATTTCAATTCAAAACG-AATA-CATCTCGTTT-GCG-ACT-GGAACCTA-T-TTACAAAGGA--CAGG-GGAACGGGA-CTTGTTT--GAATA--TCC-TGCTGG-ATAA-C-GAG-CA-TTA-CGATGCC-AT-T-GTCTCTATGC-CCGGAGTGACGGAAAATC-AATACTATT-GCG--ATTATTGCG-ATG-TTGG--TTATAG-AAATA-TTGA--AGA---T-CA-CCGGAC--CGTGTGTCCTCATC-G-A-TGCT-CGTTT-T-GTTTAGCCGA-CACCCCCTGTACCCCGGACGGGACTCAGACGA--ATTGC--CCTCA-TTG-TAAAGGA-TTTTT-C-AGAAATGCG-GCTTGTT-ACC---AG-AACCATTT-AAAACC-CTACAGC-AG--TAA-TACAA-C-GACCACGGT-G--TGCAGTTTAATG-GGGCGCTGTGACCAGTGTAA-GAAATGGATGTCCAAGCAA-TTAT-TAAAACGCC-ACGCTTG-TGGAGG-TCAAACACAATGCCGC-A-TCTGTC-AAAAAGTCGT-CACCATGCC-TCATCACTGCTTTGTACAGACG-AAACCCA-AACCTAAGAAAGAAAAGG-AC-TTG-AAAATGTACAT--TTATTACG-ATTTTG-AAT-GCAGTCAGGAAA-AC-GGAA-TT-CACA---T-CCCAAT-TTAT-GCGT-GGC--AG-ATCGTGT--GTGTCA-----AC-A-TTG--CGACAGT-CTGGA-TAT-C-GACA-AGCCCTG-TCCTC-ATTGT--ANAGGAT-T------T------CAACGGCG---CTT-CATATTTCA-AGGACCCGACACGT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGT--CCGA-GACC-GACGA-G-CAA-GGCTATGTGGAA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCCCACAATTT-CAAAGGAT---A-CG-ATGGGCAGTTTA-TTTTGAATTACCTG
Reference ( family-4236 ) : GCGGAAG-TTTA-----GTAATGAGGT-CTACAGTA-----GTATATAAAGCGGGGCGCGGT-GCATTG-GCAGTCACTTT-CGACA-TCATG-T-CAGA--CA-AGTTA-CCT-AGTGGACTT-CCACGC-AGTT-ATA-TTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-GA-TCA-G--CT-GAA-CAGAC---AA--C-GGCAG-CGT-GAATTACAAC-TCC--GCAGAGA-GAA-TCAACG-GCG-AC-T-ACAGTATT-TACA-GCGG-GGAGGG-G-GAAAAAA---GAAAC------TCA-TTTCGGATTATTAC---AAAAT--TCAAC-TGGAACGAG--GGCGTCAAT-C-ACGGAAAA-TTTAAAGT-CAAGGAAA-ATGTCTACAATG---TTGCCATCAAGCCTATCCCGGA-GA-AA-GAA--AACA-CA-GCCT-T-CA--TTCGTCG-CC-TCTTCC---GG-GA-TATGC-TNAAAAATGTGAAAAC-A-GGAAATGCAG-TGCAACCCCAA-TG-A-TT-ATCT--ACGTTT-GAATATTCGGCA-C--C-GTCTCTGG-ACT-CTGA-TATTTG-GTATGAATTTAC-GCAG-TCAAAACA-GCT-N----AACGAGGACAAAA-TT-CTG-AA---CAAAATA-GAA-TCCG-TGCA-GCAATC-TAA-AAAGGAATTCCT-AATCAC---AGACGGGGCCGTGCAGTTT-GATTTTTTC-CATGTGAAA---ATACCCACAAG-GCAG-CGGAGG---GAGAT----CTA-A---AAA--CA-TCTGCATGTGGATAA-AGAGAAATTCCAAAAC-TCC-AAGAGAGCGAT--CG-TT--CGC-ATTCAAAATCCTGACGATTCAT-T--GTGTCTACCCCGGGCTATTGTGG-TAG-CGCGTC--TACA-CAG-CCAGAAATCAAATGACCCGGCATGGGAAACGA-AATGGNTAA--GAA-TGNGGNANGGG-GATA-CACAGACTCTCGAC-CAGAAA--CGAC-AA-GCGA-T-AGCCT-TGATG-GAACAAGCNGGG-TGTGCT-----ATGAA-CCAA-CC-GTGTGGGCCTC-GTGAATGGGG-G-CAATTACA-G-C-AGGCGCTCG-CCC-GCAATATCG-ATTGAAAA-T-ATTTCAATTCAAAACG-AATA-CATCTCGTTT-GCG-ACT-GGAACCTA-T-TTACAAAGGA--CAGG-GGAACGGGA-CTTGTTT--GAATA--TCC-TGCTGG-ATAA-C-GAG-CA-TTA-CGATGCC-AT-T-GTCTCTATGC-CCGGAGTGACGGAAAATC-AATACTATT-GCG--ATTATTGCG-ATG-TTGG--TTATAG-AAATA-TTGA--AGA---T-CA-CCGGAC--CGTGTGTCCTCATC-G-A-TGCT-CGTTT-T-GTTTAGCCGA-CACCCCCTGTACCCCGGACGGGACTCAGACGA--ATTGC--CCTCA-TTG-TAAAGGA-TTTTT-C-AGAAATGCG-GCTTGTT-ACC---AG-AACCATTT-AAAACC-CTACAGC-AG--TAA-TACAA-C-GACCACGGT-G--TGCAGTTTAATG-GGGCGCTGTGACCAGTGTAA-GAAATGGATGTCCAAGCAA-TTAT-TAAAACGCC-ACGCTTG-TGGAGG-TCAAACACAATGCCGC-A-TCTGTC-AAAAAGTCGT-CACCATGCC-TCATCACTGCTTTGTACAGACG-AAACCCA-AACCTAAGAAAGAAAAGG-AC-TTG-AAAATGTACAT--TTATTACG-ATTTTG-AAT-GCAGTCAGGAAA-AC-GGAA-TT-CACA---T-CCCAAT-TTAT-GCGT-GGC--AG-ATCGTGT--GTGTCA-----AC-A-TTG--CGACAGT-CTGGA-TAT-C-GACA-AGCCCTG-TCCTC-ATTGT--ANAGGAT-T------T------CAACGGCG---CTT-CATATTTCA-AGGACCCGACACGT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGT--CCGA-GACC-GACGA-G-CAA-GGCTATGTGGAA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCCCACAATTT-CAAAGGAT---A-CG-ATGGGCAGTTTA-TTTTGAATTACCTG
gi|1 : GAAGATTTA-----G--GTGAGGT-CTACGGTA-----TTATA---AGCGGGGCGCAGT-GCATTG-GCAGTCACTTT-CGACA-TCATG-T-CAGA--CA-AGTTAACCT-AGTGGACTT-CCACGC-AGTT-ATA-T-GAAC-AGCG-ATGAAGA--T-TTTTGAATTGA-TCA-G--CT-GAA-CAGAC---AA--CCGGCAG-CGT-GAATTACAAC-TCC--GCAGAGA-GAA-TCAACG-GCG-AC-T-ACAGTATT-TACA-GCGG-GGAGGG-G-GGAAAAA----AAAC------TCA-TTTCGGAT-ATTA----AAAAT--TCAAC-TGGAACGAG--GGCGTCAAT-C-ACGGAAAAGTTTAAATT-CAAGGAAA--TGTCTACAATG---TTGCCATCAAACCTATCCCGGA-GA-AA-GAA--AACA-CA-GCCT-T-CA--TTCGTCG-CC-TCTTC----GG-GA-TATGC-TGAAAAATGTGAAA-C-A-GGAAATGCAG-TGCAACTCCAA-TG-A--T-ATCT--ACGTTT-GATTATTCGG---C--C-GTCTCTGG-ATT-CTGATTATTTG-GTATGAATTTAC-GC-G-TCAAAACT-GCT-G----AAC-AGGACAAAA-TT-CTG-AA---CAAAATA-G-A-TTCG-TGCA-GCAATC-TAA-AAAGAGATTTTT-GATC-CAGGAGACGGGA--GTGCAGTTT-GA-TTTTTC-CAAGTG-AA---ATATCCACAAG-GCAG-CGGGGGAAAGAGA-------A-A---AAA--CA-TCTGCATGTGGATAA-AGAGAAA-TCCAAGACTTCC-AAGAGAGCGAT--CGTTT--CGCAATCCAAAATCCT-ACGATTCAT-T--GTGTCTACCC--GGCTATTGTGG-TAGTCGCGTC--TACAGCAC-CCAGAAATCAAA-GATCCCGCATGGGAATCAATAATGGTTAA--GAA-TGCGG-AAGGA-GATA-CACAGAGTGTTGACACAGAAA--CAAC-AA-GCGA-T-AGCGC-TGATA-GAACAAGCGGGGTTGTGCT-----ATGAA-CCAA-CC-GTGTGGGCCTC-GTGAATGGGG-A-CAATTACAGG-CAAGGCGCTCG-TCC-CTAATATAG-A-TGAAGA-TAATTTCAATTTAAAACG-AATA-CATCTCGTTT-GCG-ACT-GGAAACTA-T-TTACAAGGAA--TGGG-GGACGGGGA-CTTGTTTTGAAATA--TCCTTGCTGG-ATAA-C-GAG-CA-TTA-CGATGCT-TTGT-GTCTCTATGC-CTGGAGTGACGGAAAATC-AATACTATT-GCG--ATTATTGCG-ATGTTTGG--TTATAG-AAATATTTGA--AGA---T-CA-CCGGAC--CGTGTGTCCTCATC-G-A-TGCT-CGTTT-T-GTTTAGCCG---ACCCCCTGTA--CCGGACGGGGCTCAGACGA--ATTGC--CTCTA-TTG-TAAAGGA-TTTTT-CAAGAAATGCA-GCTTGTT-ATC---AG-AACCATTT-AAAACC-CTACAAC-AG--TAA-TACAA-C-GACCACGGT-G--TGCAGTTTAATG-GGGCGCTGTGACCAGTGTAA-GAAATGGATGTCCAAACAA-T--T-TAAAACGCC-ATGCTTG-TGGAGG-TCAAACACAATG-CGCAA-TCTGTC-AAAAAGTCGT-CACCATGCC-TCATCACTGCTTTGTA-AGACG-AAACCCA-AACCTAAAGAAACAAAGG-AC-TTG-AAAATGTACAT--TTATTACG-A-TTTG-AAT-GCAGTCAGGAAA-AC-GGAA-TT-CACA---T-CCCAAT-T--T-GCGT-GGC--AGAAACGTGT--GTGTCA-----AC-ATTTG--CGACAGT-CTGGA-TAT-C-GACA-AGCCCTG-TCCTCAATTGTCAAAGGGAT-C------T------CAACGGCACGTCTT-CATATTTCA-GGGA-CTGCAACGT-T--AAAACAGT---TTATG-AATTG--TCTTACAGT--CCGA-GACC---CGACG-CAA-GGCGATGTGGAA--C-TCAAC--GACGATGCAAGCCACC-A-TC-A--TGCCCAC-ATTT-CAAAGGAT---A-CG-ATGGGCAGTTTA-TTTTGAATTACCTG
gi|10 : AGACAGGGAA-AC-GGAA-TTTCACA---C-CCCAAT-TCGTAGCGTAGGC--AG-ATCG-GT--GTGTCAGATCGACTC-TTGATCGACAAA-CTTTACTATTC-GACA-A--CCTGCTCTTC-ATTGT--ATAGGAT-T------TGGATCGCAACGCCG---CTT-CGTATTTCA-AGGAACAGACACGT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGT--CCGA-GGGC-GACGA-G-AAA-AGCTATGTGGAA--C-TCAAA--CACGATG-AAGCCAGC-A-TC-A-TTGCACACAATTT-CAAAGGAT---G-CG-ATGGGCAGTTTATTTTTAAATTACCTGgttcacaggcggtgtatcaaaccccgttatcctgattgggagtaaaatcttatccatgcaagtcttgggctgagatttatcgattcttacaactttctgccttttccctcgccaagatgcctctgctttcggcttaacggaattgaaaaaaggatattttcctcactttttcaaacacgaccgatgcaaccagcagtatgttggcgtctttacccgcccctcatttctacaatcctgatgatatgtctcgccgccaatctgtgaagcttct
gi|11 : CGATTCAT-T--GTGTCTACCACGGGCTATTGTGG-TAG-CGCGTC--TACA-CAC-CTCGAAATCAAATGACCTGGCATGGGAAACGA-AATGGAAAC--GGA-TGAGGCTTGGG-GATA-CACAGGCTCTCGAC-CAGAAA--CGAC-AA-GCGG-A-AGCCT-TGATG-GAACAAGCTGAG-TGTGCT-----ATGAA-TCAA-CC-GTGTG---------GAATGGGG-G-CAATTACA-G-C-AGGCGCTCGCCCC-GCAGTATCG-ATTGAAAA-T-ATTTCAATTCAAAACG-AATA-CATCTCGTTT-GCG-ACT-GGAACCTA-T-TTTCAAAGgttcgcacggcttgtatcaaacccaccgtcatcttcaacggcagtaaaatcttattcatgcaagtcttgcgtgtttgagattcgtcgattcttacaattttctgtccttggccctcgcc
gi|12 : GCGGAAA-TTTACAGT-GTAATGAGGT--TATAGTAAAA--GTATATAAAGCGGTGCGTGGT-GCATTT-GCAGTCACTTT-CGACA-TCATG-T-CAGA--CA-AGTTA-CCT-AGTGGACTT-CCACGC-AGTT-ATA-CTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-GA-TCA-G--CT-GAA-CAGAC---AA--C-GGGAG-CGT-GAATTAC---------------A-GAA-TCAACG-GTG-
gi|13 : tGTGT--GTGTCA-----AC-A-TTG--CGACAGT-TTGGA-TAA-C-GACA-AGTACTG-TCCTC-ATTGT--ATAGGAT-TTGGATGT------CAACGGCG---CTT-CATATTTCA-AGGACCC
gi|15 : TGACCAGTGTAG-GAAATGGATGTCCAAGCAC-TT
gi|16 : -CTGA-TATTTG-GTACGAATTTAC-GCAG-TCAAA
gi|2 : GACTT-CCACGC-AGTT-ATA-TTGAAC-AGCGGATTGAGAGCT-TTTTTAAT-GA-TCAAG--CT-GAAACAGAC---AA--C-GGCAAACGT-GAATTAACCC-TCT--GCAGAGA-GAA-TCAACG-GCG-AC-T-ACA-TATT-T-CA-GCGG-GGCGGG-G-GCAAAAA---GAA-C------TCA-TT-CGGATTATTAC---AA-----TCAAC-TG--ACGAG--GGCGTCAAT-C-ACGGAAA--TTTAA-GT-CAAGGAAA-ATGTATACAATG---TTTCCATCAAGCC-ATCCCGGA-GA-AAAGAA--AACA-CAAGCCT-T-CA--TTCGTCG-CC-TCTTCC---CG-GA-TATGC-TTAAAA-TGTTGAAACTA-GGAAATGCAG-TGCAACCC-AA-TG-A-TT-ATCT--ACGTTT-GAATATTCGGCA-CACC-GTCTCTGGCACT-CTGA-TATT-G-GTATGA-TTTAC-ACAG-TCAAAACAAGCT-TCAAAAACGAG-ACAAAACTT-CTG-AA---CAAAATAAGAA-TCCGCTGCA-GCA-TCGTAA-AAAGGAATTCCTTAATCAA---CGCCGGGGCCGTGCAGTTT-GATTTTTTC-CATGTGAAATTAATACCCA--AG-GCAG-CGG--------GCTTGCACTA-ACAAAAA--CAATCTCC-TGTGGATAA-AGA-AAATTC-AAAAC-TC--AAGAGAGCGAT--CG-TTTCCGC-ATT-ACAACCCTGACGATTCAT-T--GTGTCTACCCGGGGCTATTGTG--TAG-CGCGTC--TACA-CAGGCCAGAAATCAAATGACCCGGT-TAGGGAACGA-A-TGGCTAA--GAAATGCGGAAAAGGAGATT-CA-AAACTCTCGAC-CAGAAC--CGAG-AA-GCGA-TTAGCCTCTGATG-GAACAAGGTGGG--GTGCT-----ATGAA-TCAA-CC-GTGTGG-CCT--GTGAATGGGGAG-CAATCAGA-G-T-GTGCGCTCG-CCCCGCAGT-TCG--CTGAAAA-T-ATTT--ATTTAAAACG-AATAACATCTCGTTT-GCG-ACTTGGAAC-TA-TCTTACAAAGGA--CAGG-GGGACGGGAACTTGTTT--GAATA--TCC-TGCTGG-ATA--C-GAGGCA-T-A-CGATGCT--T-T-GTGT-TATGC-CCGGAGTGACG-AAAACA-AATACTATT-GCG--ATTATTGCG-ATG-TTGGGCTAACAG-TCACA-TTGA--AGAA--T-CA-TCAGACGCCGTGTGTCTCTATC-G-A-TGCTTCGTTT-TTGTTTAGCCGA-CACCCCCTGTAACCCGGACGGAACTCAGACGA--ATTGCCTCCTCATTTG-TAAAGGACTTTTT-C-AGAAATGCA-GCTTGTT-A-C---AG-A--CATTT-AAAACC-CTACAGCAAG--TAATTACAACC-GACCACGGT-G--T-CAG-TTAATG-GGGCGCTGTGACC-GTGTAA-GAAATGGATG----AGCACTTTAT-TAAAACGCCAATGCTTGCTGGAGG--CAAAC-TAATGCCG----TCTGTCAAAAAAGTCGTCCACCATGCC-TCCTCACTGCTTTGTACAG-CG-AAACCCA-AACCTAAAGAAGAAAAGG-ACTTTG-AACATGTACAT--TTTTTACGCATTTTGCCATGGCAGTCAGGAAA-AC-GGAA-TT-CACAATTT-CCCCAT-TTAT-GC-T-GGCAAAG-AACGTGTTGGTGTTC-----AC-A-TTG--CGACAGTCCTGGA-TAT-C-GACA-AGCCT---TCCTC-ATTGT--CAAGGA--T------T------CAACGGCG---CTT-T-CATTTCA-AGGACCCGACACGT-TAAAAAACAG----TTATG-GAATGGCTCTTACAGTTCCCG--GCCC-GACGA-G-CAA-GGCTATGTG--A--T-TC-AA--CACG-TG-AAGCCACCGA-TCAA-TTGCCCACAATTT-CAAA-GAT---ATCG-AAGGACAGTTTA-TTTTGAATTACCTG
gi|3 : TGAGGTGTTACAG-------GTA-ATAAAGCGGG-CGCAGG-CCATTG-GCACTCACTTT-CGACAATCATG-TTCAGA--CA-AGGTA-CCTGAGTGGACT--CCACGC-AGT--ATAGTTGAACCAGCG-ATTGAGA--T-TTTTGACT-GA-TCA-G--CTTGAA-CAGAC---AAAAC-GGCAG-CGT-GAATTACA-C-TCC--GCAGAGATGAA-TCA-CGAGCG-AC-TGACAGTATT-TACA-GCGG-GAGGGG-C-TAAAAAA---GAAAC-------CA-TTTCGGATTATTAC---AAAAT--TCAACGTGGA-CGAG--GGCGTCAAT-CCACGGAAAA-TTTAAAGT-CAAGGAAAGATGTC-ACAATGCCCTTGC-ATCAAACCCATCCGAGA-GA-AA-GAATAAATA-CA-GCCT-TTCA--TTCGTCGGCCGTCTTCCCGGGGCGA-TATGT-GAAGAAAT-TGAAAAC-A-AGAAGTGCAG-TGCAACCCCAAATG-A-TTGATCTTGACGTTT---ATATTCGG-A-C--CTGTCTCTGG-ACT-CTGA-TATTTG-GTATGAATTTAC-GCAG-TCAAA-CA-GCT-C----AACGAGGACAAAA-TT-CTG-AA---CAAAATA-GAA-TCCG-T-CA-GCAATC-TAA-AAAGGAATTCTA-AATCAC---AGACGGGGCCGTTCAGTTT-GATTTTTTC-CATGTG-AC---ATATCCACGAA-GCAG-CGGA-G---GAGAT----CTA-A---AAAACCA-TCTGCATGTG--TAACGGAAAAATTTCAGACT-TCC-AAGAGAGCGAT--CG-TT--CGC-ATGAAACAACCTGACGAGTCATGTTGGTGTCTACCCC-GGCTATTGGGGTTAG-CGCGTCTGTACA-CAG-CCGAGAATCAAATGACCCGGGCTGTGAAACAA-AATGGTTAA--GAA-TGCGGGAA-GG-AATA-CACAGAGTGT--GC-CAGAAAACCAACGAA-GCGA-T-AACCT-TGATGCGAACAAGCGGGG-T-TGCT-----AGGAA-CCAAGCC-GTGTGGG-CTC-GTGAATGGGG-ACCAATTACA-GAT-AGGCGCTCG-CCC-GCAATATCGTATTGAAGA-T-ATTTCAATTTAAAACGCAATA-CATCTCGTTTGGCGAACT-GGAACCTATT-TTACAAGGGA--CAGG-G--ACGGGA-GTTGTTT--GAATATTTCC-TGCTGG-ATAA-C-GAG-CA-TTA-CGATG-C-AT-TGGTCTCTATGC-CCGGAGTGACGG--AATCGAATACTATT-GCG--ATTATTGTG-ATG-TTGG--TTATAG-AAATA-TTGA--AGAGATC-CA-CCGGAC--CGTGTGTCCTCATCAG-A-GGCT-CATTT-T-GTTTAGC--A-CA-CCCCTGTACCC--GACGGGACTCAGACGGATATTG---TCTCA-TTG-TAAAGGA-TTTTTGC-AGAAATGCA-GCTTGTT-ACC---AGAAAACATCT-AGAACCGCTACAGC-AG--TAA-TACAA-CGGACCACGGT-G--TGCAG-TTAATGAGGGCGCTGTGACCAGTGTAAGGAAAT-GATGTCCAAACAA-TTATGTAAAACGTC-ATGCTTG-TGGAGGTTCAAATACAATGCCGC-AGTCTGTC--AAAAGTCGT-CACCATGCCTTCCTCACTGCTTGTTACAGACGAAAACCCATAACATAAGAAAGAAAAGGTAC-TTG-AAAATGTACATCCCTCTTACG-ATTTTG-AAT-GCAGTCAGGAAAGAC-GGAAGTT-CACA---T-CCCCATGTTATCGTGT-GGCAGAG-ATC-TG---GTGTCA-----AC-A-TTG--CGATAGT-TTAGATTAT-CGGACA-AGCCCTG--GCTC-ATTGTC-AAAGGATAC------T------CAACGGCG---CTTGCATATTTCATA----CCGACACGTGTA-AAAACAGTTTGTTATGCGAATGGCTCTTACAGT--CCGAGGACC-GACGA-GTCAAGGGCGATGTGGAAAGCGTCAAAACCAC-ATG-AAGCCACC-AGTC-ACTTGCCCACAATTTGCAAAGGATTAGA-CGAATGGgttcacacggcctgtatcaaactccgtcatcctcaacggcagtaaaatccttatccagaagtcttggggttgagattcatgcgattcttacaacttctctgccttttgctctcggccaagatgccctctgctttcggattaacggaattgaaaaaagatattagtcctcacttttcaacacgaccggagaaccagcagtattgggtccttaccccgcgctcatcttctacaatcctgacgattgtcgagaccaatcgtggaagccttcta
gi|4 : atttatgtGCGGAAG-TTTA-----G--GTGAGGT-CTACAG-------GTATATAAAGCGGGGCGCAGT-GCATTG--TAGTCACTTT-CGACA-TCATG-T-CAGA--CA-AGTTA-C-T-AGTG-ACTT-CCACGC-AGTT-ATA-TTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-GA-TCA-G--CT-GAA-CAGAC---AA--C-GGCAG-CGT-GAATTACAAC-TCC--GCAGAGA-GAA-TCAACG-GCG-AC-T-ACAATATT-TACA-GCGG-GGAGGG-GCAAAAAAA---GAAAC------TCA-TTTCGGATTATTACC--AAAAT--TCAAC-TGGAACGAG--GGCGTCAAT-C-ACGGAAA--TTTAAAGT-CAAGGAAA-ATGTCTACAATG---T-GCCATCAAGGCTATTCCAGA-GA-AA-GAA--AACA-CA-GCCT-T-CA--TTCGTCG-CC-TCTTCC---GG-GA-TATGC-TGAAAAATGTGAA--C-A-GGAAATGCAG-TGCAACCCCAA-TG-A-TT-ATCT--ACGTTT-GAATATTCGGCA-C--C-GTCTCTGG-ACT-CTGA-TATTTG-GTATGAATTTAC-GCAG-TCAAAACA-GCT-G----AACGAGGACAAAA-TT-CTG-AA---CAAAATA-GAAATCCG-TGCA-GCAATC-TAA-AAAGGAATTCCT-AATCAC---AGACGGG-CCGTGCAGTTT-GATTTTTTC-CATGTCAAA---ATACCCACAAG-GCAG-CGGAGG----AGAT----CTA-A---AAA--CA-TCTGCATGTGG-TAA-AGAGAAATTTCAAAAC-TCC-AAGAGAGCGAT--CG-TT--CGC-ATTCAAAATCCTGACGATTCAT-T--GTGTCTACCCCGGGCTATTGTGG-TAGACGCGAC--TACA-CAG-TCAGAAATCAAATGACCC-GCATGGGAAACGA-AATGGCTAA--GAA-TGCGGAAAGGA-GATA-CACGGAGTGTTGAC-CAGAAA--CAAC-AA-GCGA-T-AACCT-TGATG-GAACAAGCGGGG-TGTGCT-----ATGAA-TCAA-CC-GTGTGGGCCTT-GTGAATGGGC-G-CAATTACA-G-C-AGGCGCTTG-CCC-GCAGTATCG-ATTGAAAA-T-ATTTCAGTTCAAAACG-AATA-CATCTCGTTT-GCG-ACT-GGAACCTA-T-TTACAAAGGA--CAGG-GGAACGGGA-CTTGTTT--G-ATA--TCC-TGCTGG-ATAA-C-GAG-CA-TTA-CGATGCC-AT-T-GTTTCTATGG-CCGGAGTGACGGAAAATC-AATACTATT-GCG--ATTATTGCG-ATG-TTGG--TTATAGAAAATA-TTGA--AGA---T-CA-CCGGAC--CGTGTGTCCT-ATC-G-A-TGCT-CGTTT-T-GTTTAGCCGA-TACCCCCTGTACCCCAGACGGGACTCAGACGA--ATTGC--TCGCA-TTGTTAAAGGA-TTTTT-C-AGAAATGCA-GC-TGTT-ACCAAAAG-AACCATTTAAAAACC-CTACAGC-AG--TAA-TACAA-C-GACCACGGTGG--TGCAGTTTAATG-GGGCGCTGTGACCAGTGTAA-GAAATGGATGTCAAAGAAA-TTAT-TAAAACGCC-ATGCTTG-TGGAGG-TCAAATACAATGCCGC-A-TCTGTC-AAAAAGTCGT-CACCATGCC-TCATCACTGCTTTGTACAGACG-AAACCCA-AACCTAAGAAAGAAAAGG-AT-TTGAAAAATGTACAT--TTATTACG-ATTTTG-AAT-GCAGTCAGGAAA-ACGGGAA-TT-CACA---T-CCCAAT-TTAT-GTGT-GGC--AG-ATCGTGT--GTGTCA-----AC-A-TTG--TGACAGT-CTGGA-TAT-C-GACA-AACCCTG-TCCTC-ATTGT--CAAGGAT-C------T------CAACGGCG---CTT-CATATTTCA-AGGACCCGACACGT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGT--CCGA-GACCAGACG--G-CAA-GGCGATGTGGAA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCCCAC-ATTT-C-AAGGAT---A-CG-ATGGGCAGTTTA--TTTGAATTACCTG
gi|5 : GGAAG-TTTAACAGTGTAATGAGGT--TATAGTAAAAAGGTATATAAAGCGGG-CGCGAT-GCATTCTGTAGTCACTTT-CGACA-TCAT----TAGAA-CA-AGTTT-ACT-AGTGGACTT-C-ACGC-AGTT-ATA-TTGAAC-AGCG-ATTGAGA--TGTTTTGAAT-GAATCA-G--CT-GAA-CAGAC---AA--C-GGCAG-CGTCGAATTACAACCTCC--GCAGAGA-GAA--CAACG-G-G-ACCT-AC-GT-TT-TACAAGCGG-GGAAGGCG-GCAAAAA---GAAAC------TCAATTTCGGATTATTAC---AAAATATTCAAC-TGGAACGGACAGGCGTCAAT-C----GGAAA-TTTAAAGT-CA-GGAAA-ATGTCTA-AATG---TTGCCATCAAGCCTATTCCAGAAGACAA-GAAG-AACATCA-GC-T-T-CAAATTCGTCG-CC-TCTTCC---GG-GAATATGC-T--AAAAT-TGAAA-C-A-GGAAATGCAG-TGCAAACCTAA-CGGA-TT-ATCT--ACGTTT-GAATATTCGGCA-C--C-CTCTCTGG-ATTTCTGA-TATTTG-GTATGAATT-AC-GCAG-TCAACACA-GCT-C----AACGAGGACAGAA-TTGCTGCAA---CAAA-TA-GAA-TCCG-TGCAAGCAATC-TAA-AA-GGAAT--CT-AATCAC----GACGGCGCGGTGCAGTTTTGATTTTTTCACAT-TGAAA---ATACC-ACAAGAGCAGGCGGAGG---GAGAT----CTAGA---AAA--CA-TCTGCATGCTGGTAA-AGTGAAAATTCAAGAC-TCC-AAGAGAGCGAT--CG-TT--CGC-ATTAACAACCCTAACGATTCAT----GTGTCT--CCCGGGCTATTGTTG-TAG-C-CGTC---ACA-AAG-C-AGAAATCAA-TGACCCG-CATGGGAAAC-A-AATGGA-AACGGCA-TGAGGCTTGGG-GATA-CACAGGCTCTCGAC-AGAAAA--CGAC-AAAGCGAGT-AGCCT-TGATT-GAACAGGGAGGG--GTGCTGGTCTATGAAATCAA-CCCGCGTGGGCCTCCGTGAATGGGG-G--AATAACACG-C-AGGCCTTTA-TCC-CCAATATCG-ATTGAAAAAT-ATTTCA-TTTAAAACGTAATG-CATCTCGTTT-GCG-ACT-GGATCCTA-T-TTACAAAGGAAGCAGGCGGAA-GGGA-CTTGTTTT-GAATAA-TCC-TGCTGGGATAA-CCGAG-CAATTAACGATGCCCAT-T-GTGTCTATGCACCGGAGTG-CGGAAA-TC-AATACTATTAGCTTTATTATTGCGGATG-TTGG--TTATAG-AAAT--TTG---AGA---TACA-CCGGAC--CGTCTGCTCTCATC-GTA-TGCT-CGTTTGT-GTTTA-CCGA-CACCCCCTGTACCCCAGACGGGACTCAGACGA--ATTGC--TCTCA-TTG-T-AAGGA-TTTTT-C-AGAAATGCGAACTTGCTAACC---AG--ACCATTT-AAAACC-CTACAGC-AAGCTAA-TAAAA-C-GA-CACGGT-GCTCACAGTT
gi|6 : TTGTTG-TAG-CGCGTC--TACA-CAC-CCAGAAATCAAATGACCCGGAATGGGAAAAGA-AATGGTTAC--GCA-TGATAAAGGGA-GATTTCA-AAACACTCGAT-CAGAAA--CGAG-AA-GCGA-T-AGCAT-TGATG-GAACAAGCTGGG-TGTGCT-----ATTAA-CCAA-CC-GTGCGGGCCAC-GTGAATGGGA-G-CAATTACA-A-C-AGGCGCTTGTCCC-GCAATATCG-CTTGAAAA-T-ATTTCAGTTCAAAACG-AATA-TATCTCGTTT-GTG-ACT-GGAAGCTA-T-TTACAAAGGA--CAGG-G-ATCGGGA-CTTGTTT--GAATA--TCC-TGCTGG-ATAAAC-GAG-CA-TTA-CGATGC--AT-T-GTCTCTATGG-CCGGAGTGACGGAAAATC-AATACTATT-GCG--ATTATTGCG-ATGGTTGG--CTACAG-TCACA-TTGAGAAGA---A-CATCCGGAC--CGT-TGCTCTCATC-G-ACTGCT-CGTTT---GTTTAGCCGAACACCCCCTGTACCCCGGACGGGACTCAGACGA--ATTGC--TCTCA-TTG-TAAAGGA-TTTTT-C-AGAAATGCA-GCTTGTT-ACC---AG-AACCATTT-AAAACC-CTACAGC-AG--TAA-TACAA-C-GACCACGGT-G--TGCAGTTTA----GGGCGCTGTGACGAGTGTCA-GAAATGGATGACCAAGAAA-TTAT-TAAAAGGAC-ACGCGTG-TGAAGG-TTAAACACAATGCCGC-A-TCTGTC-AAAAAGTCGT-CCCCATGCC-CCATCGCTGCTTTGTACAGATG-AAACCCA-AACCCAAGAAAGAAAAGG-AC-TTG-AAAATGTACAT--TTATTACG-ATTTTT-AAA-GCAGTCAAGAAA-AC-GGCA-TA-CACAC--T-CCAAAT-CTAT-GCGT-GGC--AG-ATCGTGT--GTGTCA-----AC-A-TTG--CGACAGT-TTGGA-TAT-C-GACACCCCCCTG-TCCTC-ATTGT--ATAGGA--T------T------CAACTGTG---CTT-TATATTTCA-AGGACCCGACACAT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGT--CCGA-GACC-GACGA-G-CAA-GGCTATGTGGAA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCACACAATTT-CAAAGGAT---A-CG-ATGGACAGTTTA-TTTTGAATTACCTG
gi|7 : ggCG-ATTGAAAA-T-ATTTCAGTTCAAAACG-AAAA-CATCTCATT--AAG-ACT-GGAACCTA-T-TTACAAAAGA--CAGG-GGA-CGGGA-CTTACTT--AAATA--TCC-TGCAGG-ATAA-T-GAG-CA-TTA-CGATAGC-AT-T-GTCTCTATGA-CCGGAGTGACAGAAAATC-AATACTATT-GCG--AT----------A-TTGG--CTATAG-AAATA-TTAA--AGA---T-CA-CCGGAC--TGTCTGTTTTCATC-G-A-TGCT-CGTTT-T-GTTTAGCCGA-TACCCCCTGTACCCCGGACGGGACTCAAACGG--ATTGC--CTGCA-TTG-TAAGGGA-TTTTT-T-AGAAATGCG-GCTTGCT-ACC---AG-AACCATTT-CCAACC-CCACAGC-AG--TAG-TACAA-C-CACCACGGT-A--TGCAGTTTAAGG-GGTCGCTGCGACGAGTGCCA-GAAATGGATGCCCAAGCAA-TTAT-TACGAGGCC-ACGCTTG-TGGAGG-TCAAACACAGTGCCAC-A-TCTGTC-AAAAAGTCGT-CGCCATGCC-CCATCACTGCTTTGTACAGATG--AACCCA-AACCTAAAAAGGAAAAGG-AC-TTG-AAAATGTAAAT--TTATTACG-ATTTCG-AAT-CCAGCCAGGAAA-AC-GGAA-TT-CACA---TCCCCAAT-TTAT-GCGT-GGC--AG-ATCGTGT--GTGTCA-----AT-A-TTG--TGACAGT-TTGGA-TAT-C-GAAA-AGCCCCG-TCCTC-ATTGT--ATAGGAT-T------TGGATCGCAACGGCG---CTT-CCTATTTCA-AGGACTCGACACGT-T--AAAACACT---TTATG-GAATGGCTCTTACAGT--CAGA-GACC-GACCA-G-AAA-GGCTATGTGGGA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCACACAATTT-CAAAGGAT---A-CG-ATGGGCAGTTTA-TTTTGAATTACCTGgttcacacggcttgtatcaaacccaccgtcatcctgaacggcagtaaaatcttatccatgcaaatcttggggttgtgattcatcgattcttacaactttctgccctttgccctcgctaagatgccatctgcttccggattaaccgagctgaaaaaagggtatttccctcactttttcaacacgacagagaaccagtattacgtgggtccttaccccgccgctcatttctacaatcctgacgatatgtccactgccaatcgtgaagctttcta
gi|8 : CGGAAG-ACTG-----GTAATGAGGTGCTACAG-------GTATATAAAGCGGGGCGCAGTTGCTATG-CCAGTCACTTTTCGACA-TCATGGT-CAGGATCACAGTTA-CCT-AGTGGACTTTCCACGCCAGTTTATA-TTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-GA-TCA-GAACT-GAA-CAGACCCCAA--C-CGCAG-CGT-GAATTA-AAC-TTCCGGCAGAGA-GAGCTCAACG-GCGTAC-T-ACAATATTCTA-A-GCGGAGGAGGG-G-GAAAAAAAAGGAAACCGAACTTCA-TTT-GGATTTTTACTCAAAAAT--TCAAC-TGGAACGAT--GGCGTCAATTC-ACGGAAA--TTTAAAGTTCAAGGAAA-ATGTCTACAATG---TTGCCATCAAGCCCATCCCGGA-GA-AA-GAA--AATA-CA-GCCTGT-CA--TTCGTCG-CC-TCTTCG---GG-GA-TATGCGTTAATAATGTGAAAAC-AGGGAAATGCAGTTGCAACCC--A-TA-ATTT-ATCT--ACGTTTGGAATATTCGGCACC--C-GTCTCTGG-ACT-TTGA--ATTTGAGTATGAA-TTACTACAGTTCAAAACAGGCTCT----AACGAGGACAAAA-TT-CTG-AATACCAAAATA-GAA-TCGG-TGCA-GCAATC-TAACAAAGGAATTCCT-AATCAC---AAGAGGGGCCGTGCAGTTT-GA----TTC-CATGTT-CA---ATACCC-C-AG-GCAG-CGGAGG---GAGAT----CAG-A---AAA--CA-TCTGCATGTGGATAA-AGAGAAATTCAAAAAC-TCCAAAGAGAGCGATTCTG-TTA-CGC-ATTCAAAATCCTGA-GATTCA--T--GTGTCTACCCCGGCCT-TTGTAG-TGG-TGCGGCGTTACA-TAG-CCAGAAATCAAAT-ACCTGGCgttcacacagcttgtatcaaacctaccgtcatcgtcaacggcagtgaaatcttatccatgcaagttttggggttgggattcatcgattctcataactttctgccctttgccctagctaagatgccctctgttttcggattaaacgagctgaaaaaaggatatttccctcactttttcaacacgacagaaaaccagcattacgtgggtccttaccacgccc
gi|9 : A--CA-TCTGCATGTGAATAA-GGAAAAATTCAAAAAC-TGC-AAGAGGGCGAT--CG-TT--CGC-ATTCAAAATCCTGAGGATTCTC-T--CTGCTTGCCCCAGGCTATTGTTG-TAG-CGCGTC--TACA-CAG-CCAGAAATCAAACGACCCGGCATGGGAAACGA-AATGGAAAC--GGA-TGAGGCTTGGG-GATA-CACAGGCTTTCGAT-CAGAAA--CGAC-AA-GCGA-T-AGCGC-TGATT-GAACAAGCTGAG-TGTCCT-----ATGAA-CTAA-CC-GTGTGGGCAAC-GTGAATGGGG-G-AAATTACA-G-C-AGGCGCTTC-CCC-GCAATATCG-ATTGAAAA-T-ATTTTAATTCAAAACG-AATA-CAGCTCCTTT-GCG-ATT-GGAACCTA-T-TTACAAAGGA--CAGG-GT-ACGGGA-CTTGTTT--GAATA--TCC-TGCTTG-ATAA-C-GAG-CA-TTA-CGATACC-AT-T-GTGTCTACGC-CCGGAGTGACGGAAAATC-AACACTATT-GCG--ATTATTCCG-ATG-T
blockSeqs : . ACAGTGTA GT TAAAAAG G T TG T A TT AT C . G T C T G C G GC G . A A AA T A CCC AA . A C ACC C CG T C A T C G G C A A GC C AAG CGAACT A TCA AT G CA T C A T G CCC C A C A TA T A G T AA G G CCGG C A GTT G A T G T C A G T G TG G CAC AC T C T . A T T A TCAAA C G C TAC A A C A G C T C G T T A AAATTA G A G AG G TGCA G CAA AC A A C A T C . A TC . TC . A GTTG G T A TG . G . AA CG A A CTT A T C C . AC G A G T C C T T GGTCT A G C TCC A C C A . C C T A . A C A G A T T C AG C GGA A T TT . G A C G A A CCA . G G A G A TT G G GC A . GA GATC T GC G A T C T TT A AT CT T T C G . GA A AAA A A G A GC T C G G CT T A G T T G A C T AG A C T A T T T A CC C C G G G G T ATT C G A A AA . TG GATCG T . AT C C T G C G C . C T TTTGGATCG . G G T A G AA TTG C TC G A . T G T AG G AC . G G A C A G TAG T A T
blockSeqs : . CAGTGTA GC TAAAA G . G . . GT A . . . . . . . . . . . . . . . . . . . . . . CAA . . . . . . . . A . . . CG A . . . C . . . . . A . . . T . . . G . . . . . . . C . . TT G A . . . C . . . . . . CA . . . . . . . . G CT . . . . . . . . . . . A G . T . AAA A . . AG G . . . . . G . G T C . . . . A . C T G . . GT . . . CT . . C AAA . . C C . . . . . . . . T T . . . . TC . . . . . T . . . . A T . . . . . . . . GAA . . A . . . . . . . CA . . C . . . . . . . . . . AT . . G . . . . GT . . . . . . . . A . . . . . . . . . . . . T . . T . . . . . A . . . . . . . . . . . . . . . . C . . C . AG . . . . . . . T . . . G . . . T TTTGGATGT . . A . C . A . . . . . . . . T . . . . . . . . A . . . . .
blockSeqs : . GTA C . G . G . . T . . . . . . . . . . . . . . . . . . . . . . . CAA . . . . . . . . G . . . G A . . . . . . . . . . . . . T . . . . . . . . . . . C . . GA G A . . . T . . . . . . CA . . . . . . . . . C . . . . . . . . . . . A G . T . AAA A . . AG G . . . . . A . G T C . . . . . . A T G . . . . . . TT . . C GAA . . C G . . . . . . . . G T . . . . TT . . . . . . . . . . A . . . . . . . . . GAA . . . . . . . . . . CA . . T . . . . . . . . . . TA . . G . . . . T . . . . . . . . A . . . . . . . . . . . . T . . T . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . A TTTGGATCG . . A . C . . . . . . . . . . G . . . . . . . . A . . . . .
blockSeqs : . G . . . . C . . T . . . . . . . . . . . . . . . . . . . . . . . CA . . . . . . . . A . . . C C . . . . . . . . . . . . . C . . . . . . . . . . . C . . TG . . . . . . . . . . . . CA . . . . . . . . . G . . . . . . . . . . . A G . T . AC . . . A . . . . . . A . G A A . . . . . . C T G . . . . . . CT . . C AAA . . C G . . . . . . . . G T . . . . AC . . . . . . . . . . G . . . . . . . . . AT . . . . . . . . . . CA . . G . . . . . . . . . . T . . C . . . . T . . . . . . . . A . . . . . . . . . . . . T . . A . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . A TACT . . A . C . . . . . . . . . . G . . . . . . . . A . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AA . . . . . . . . . . . . G A . . . . . . . . . . . . . . . . . . . . . . . . . G . . T . . . . . . . . . . . . A . . . . . . . . . C . . . . . . . . . . . . . . . . CA . . . . . . . . . . . . A T A . . . . . . C T G . . . . . . TT . . A CTT . . C C . . . . . . . . A T . . . . AC . . . . . . . . . . G . . . . . . . . . GA . . . . . . . . . . CA . . C . . . . . . . . . . A . . C . . . . T . . . . . . . . A . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . A TCT . . A . C . . . . . . . . . . T . . . . . . . . A . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . T . . . . . . . . T A . . . . . . AA . . A AAG . . . C . . . . . . . . T . . . . . T . . . . . . . . . . G . . . . . . . . . TA . . . . . . . . . . T . . C . . . . . . . . . . T . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . T TT . . C . C . . . . . . . . . . T . . . . . . . . . . . . .
blockSeqs : . . . . . . . . A . . A CTT . . . T . . . . . . . . T . . . . . . . . . . . . . . . . A . . . . . . . . . A . . . . . . . . . . A . . G . . . . . . . . . . . . . . . . . . . . T TT . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqCons : C* ******* ** C*** CA* A*** G*** NNN T* ** A** ** TTTA************ ***
originalCons : GCGGAAG-TTTA-----GTAATGAGGT-CTACAGTA-----GTATATAAAGCGGGGCGCGGT-GCATTG-GCAGTCACTTT-CGACA-TCATG-T-CAGA--CA-AGTTA-CCT-AGTGGACTT-CCACGC-AGTT-ATA-TTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-GA-TCA-G--CT-GAA-CAGAC---AA--C-GGCAG-CGT-GAATTACAAC-TCC--GCAGAGA-GAA-TCAACG-GCG-AC-T-ACAGTATT-TACA-GCGG-GGAGGG-G-GAAAAAA---GAAAC------TCA-TTTCGGATTATTAC---AAAAT--TCAAC-TGGAACGAG--GGCGTCAAT-C-ACGGAAAA-TTTAAAGT-CAAGGAAA-ATGTCTACAATG---TTGCCATCAAGCCTATCCCGGA-GA-AA-GAA--AACA-CA-GCCT-T-CA--TTCGTCG-CC-TCTTCC---GG-GA-TATGC-TNAAAAATGTGAAAAC-A-GGAAATGCAG-TGCAACCCCAA-TG-A-TT-ATCT--ACGTTT-GAATATTCGGCA-C--C-GTCTCTGG-ACT-CTGA-TATTTG-GTATGAATTTAC-GCAG-TCAAAACA-GCT-N----AACGAGGACAAAA-TT-CTG-AA---CAAAATA-GAA-TCCG-TGCA-GCAATC-TAA-AAAGGAATTCCT-AATCAC---AGACGGGGCCGTGCAGTTT-GATTTTTTC-CATGTGAAA---ATACCCACAAG-GCAG-CGGAGG---GAGAT----CTA-A---AAA--CA-TCTGCATGTGGATAA-AGAGAAATTCCAAAAC-TCC-AAGAGAGCGAT--CG-TT--CGC-ATTCAAAATCCTGACGATTCAT-T--GTGTCTACCCCGGGCTATTGTGG-TAG-CGCGTC--TACA-CAG-CCAGAAATCAAATGACCCGGCATGGGAAACGA-AATGGNTAA--GAA-TGNGGNANGGG-GATA-CACAGACTCTCGAC-CAGAAA--CGAC-AA-GCGA-T-AGCCT-TGATG-GAACAAGCNGGG-TGTGCT-----ATGAA-CCAA-CC-GTGTGGGCCTC-GTGAATGGGG-G-CAATTACA-G-C-AGGCGCTCG-CCC-GCAATATCG-ATTGAAAA-T-ATTTCAATTCAAAACG-AATA-CATCTCGTTT-GCG-ACT-GGAACCTA-T-TTACAAAGGA--CAGG-GGAACGGGA-CTTGTTT--GAATA--TCC-TGCTGG-ATAA-C-GAG-CA-TTA-CGATGCC-AT-T-GTCTCTATGC-CCGGAGTGACGGAAAATC-AATACTATT-GCG--ATTATTGCG-ATG-TTGG--TTATAG-AAATA-TTGA--AGA---T-CA-CCGGAC--CGTGTGTCCTCATC-G-A-TGCT-CGTTT-T-GTTTAGCCGA-CACCCCCTGTACCCCGGACGGGACTCAGACGA--ATTGC--CCTCA-TTG-TAAAGGA-TTTTT-C-AGAAATGCG-GCTTGTT-ACC---AG-AACCATTT-AAAACC-CTACAGC-AG--TAA-TACAA-C-GACCACGGT-G--TGCAGTTTAATG-GGGCGCTGTGACCAGTGTAA-GAAATGGATGTCCAAGCAA-TTAT-TAAAACGCC-ACGCTTG-TGGAGG-TCAAACACAATGCCGC-A-TCTGTC-AAAAAGTCGT-CACCATGCC-TCATCACTGCTTTGTACAGACG-AAACCCA-AACCTAAGAAAGAAAAGG-AC-TTG-AAAATGTACAT--TTATTACG-ATTTTG-AAT-GCAGTCAGGAAA-AC-GGAA-TT-CACA---T-CCCAAT-TTAT-GCGT-GGC--AG-ATCGTGT--GTGTCA-----AC-A-TTG--CGACAGT-CTGGA-TAT-C-GACA-AGCCCTG-TCCTC-ATTGT--ANAGGAT-T------T------CAACGGCG---CTT-CATATTTCA-AGGACCCGACACGT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGT--CCGA-GACC-GACGA-G-CAA-GGCTATGTGGAA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCCCACAATTT-CAAAGGAT---A-CG-ATGGGCAGTTTA-TTTTGAATTACCTG
finalCons : GCGGAAG-TTTA-----GTAATGAGGTC-TACAG-------GTATATAAAGCGGGGCGCGGT-GCATTG-GCAGTCACTTT-CGACA-TCATG-T-CAGA--CA-AGTTA-CCT-AGTGGACTT-CCACGC-AGTT-ATA-TTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-GA-TCA-G--CT-GAA-CAGAC---AA--C-GGCAG-CGT-GAATTACAAC-TCC--GCAGAGA-GAA-TCAACG-GCG-AC-T-ACAGTATT-TACA-GCGG-GGAGGG-G-GAAAAAA---GAAAC------TCA-TTTCGGATTATTAC---AAAAT--TCAAC-TGGAACGAG--GGCGTCAAT-C-ACGGAAA--TTTAAAGT-CAAGGAAA-ATGTCTACAATG---TTGCCATCAAGCCTATCCCGGA-GA-AA-GAA--AACA-CA-GCCT-T-CA--TTCGTCG-CC-TCTTCC---GG-GA-TATGC-TNAAAAATGTGAAAAC-A-GGAAATGCAG-TGCAACCCCAA-TG-A-TT-ATCT--ACGTTT-GAATATTCGGCA-C--C-GTCTCTGG-ACT-CTGA-TATTTG-GTATGAATTTAC-GCAG-TCAAAACA-GCT-N----AACGAGGACAAAA-TT-CTG-AA---CAAAATA-GAA-TCCG-TGCA-GCAATC-TAA-AAAGGAATTCCT-AATCACA---GACGGGGCCGTGCAGTTT-GATTTTTTC-CATGTGAAA---ATACCCACAAG-GCAG-CGGAGGG---AGAT----CTA-A---AAA--CA-TCTGCATGTGGATAA-AGAGAAATTCCAAAAC-TCC-AAGAGAGCGAT--CG-TT--CGC-ATTCAAAATCCTGACGATTCAT-T--GTGTCTACCCCGGGCTATTGTGG-TAG-CGCGTC--TACA-CAG-CCAGAAATCAAATGACCCGGCATGGGAAACGA-AATGGNTAA--GAA-TGNGGNNNGGG-GATA-CACAGACTCTCGAC-CAGAAA--CGAC-AA-GCGA-T-AGCCT-TGATG-GAACAAGCNGGGT-GTGCT-----ATGAA-CCAA-CC-GTGTGGGCCTC-GTGAATGGGG-G-CAATTACA-G-C-AGGCGCTCG-CCC-GCAATATCG-ATTGAAAA-T-ATTTCAATTCAAAACG-AATA-CATCTCGTTT-GCG-ACT-GGAACCTA-T-TTACAAAGGA--CAGG-GGAACGGGA-CTTGTTT--GAATA--TCC-TGCTGG-ATAA-C-GAG-CA-TTA-CGATGCC-AT-T-GTCTCTATGC-CCGGAGTGACGGAAAATC-AATACTATT-GCG--ATTATTGCG-ATG-TTGG--TTATAG-AAATA-TTGA--AGA---T-CA-CCGGAC--CGTGTGTCCTCATC-G-A-TGCT-CGTTT-T-GTTTAGCCGA-CACCCCCTGTACCCCGGACGGGACTCAGACGA--ATTGC--CCTCA-TTG-TAAAGGA-TTTTT-C-AGAAATGCG-GCTTGTT-ACC---AG-AACCATTT-AAAACC-CTACAGC-AG--TAA-TACAA-C-GACCACGGT-G--TGCAGTTTAATG-GGGCGCTGTGACCAGTGTAA-GAAATGGATGTCCAAGCAA-TTAT-TAAAACGCC-ACGCTTG-TGGAGG-TCAAACACAATGCCGCA--TCTGTC-AAAAAGTCGT-CACCATGCC-TCATCACTGCTTTGTACAGACG-AAACCCA-AACCTAAGAAAGAAAAGG-AC-TTG-AAAATGTACAT--TTATTACG-ATTTTG-AAT-GCAGTCAGGAAA-AC-GGAA-TT-CACA---T-CCCAAT-TTAT-GCGT-GGC--AG-ATCGTGT--GTGTCA-----AC-A-TTG--CGACAGT-CTGGA-TAT-C-GACA-AGCCCTG-TCCTC-ATTGT--ANAGGATTTA------------CAACGGCG---CTT-CATATTTCA-AGGACCCGACACGT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGT--CCGA-GACC-GACGA-G-CAA-GGCTATGTGGAA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCCCACAATTT-CAAAGGAT---A-CG-ATGGGCAGTTTA-TTTTGAATTACCTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CAGAGAACCAGCAGTATGTGGGTCCTTACCGAGCCGCTCATTTCTAC
Alignments
lowQualScore : 33333333 22 3333333 11 111 111 111111 111 11 111 11 1111 1 1 222222 111 1111 111111 1111 1111 111 11 11 11111 1 1 111 11 11 1 11111 111 111 1 11 11111 1 11 666666666666 11 111 111
lowQualScore : 8 88888888 22 8888888 6 6 0 6 99 6 6 888 55 6 6 6 5 5 5 5 5 5 77 5 5 5 5 77 5 5 000 77 5 5 5 777 5 77 5 5 5 5 6 6 3 6 6 6 777 1 111 999999 6 888 99 6 99 6 6 55 6 6 111 4 6 6 6 55 6 6 6 6 99 6 6 4444 6 6 999 6 1 6 6 6 9 6 6 6 6 99 6 888 99 6 6 5 5 5 5 5 3 111111 6 6 6 111 6 6 6 6 6 6 6 4444 1 6 7 6 777777 5 6 6 44 4444 4444 6 111 77 5 3 5 1 1 4 5 5 77 5 33 5 4 9999 1 0 4 8 22 4 4 0 0 5 44 66 0 5 1 777 5 5 2 1 0 5 66 5 5 5 5 5 5 1 88 22222 5 5 5 666 5 5 0 5 5 0 5 4 4 4 1 8 4 4 4 4 4 4 66 5 111 5 11 11 5 5 5 5 5 5 5 555 5 5 1 5 5 5 66 5 0 77 5 5 77 88888 5 77 4 5 5 5 5 999 5 0 77 77 5 5 5 5 5 77 5 000 5 5 5 5 77 5 5 5 5 77 5 6 5 3 5 6 6 0 6 6 888 6 6 6 6 6 6 6 6 99 6 6 6 5 5 5 5 555 5 5 0 1 5 55 5 66 22222 5 5 66 5 0 5 5 5 1 5 5 11 1 000000000000 888 5 2 5 2 5 33 000 5 77 5 5 5 5 5 1 77 5 77 5 5 5 5 5 0 5 5 000 5 5 6
lowQualScore : . ........ .. ....... . . . . .. . . ... .. . . . . . . . . . .. . . . . .. . . ... .. . . . ... . .. . . . . . . . . . . ... . ... ...... . ... .. . .. . . .. . . ... . . . . .. . . . . .. . . .... . . ... . . . . . . . . . . .. . ... .. . . . . . . . . ...... . . . ... . . . . . . . .... . . . . ...... . . . .. .... .... . ... .. . . . . . . . . .. . .. . . .... . . . . .. . . . . . .. .. . . . ... . . . . . . .. . . . . . . . .. ..... . . . ... . . . . . . . . . . . . . . . . . . .. . ... . .. .. . . . . . . . ... . . . . . . .. . . .. . . .. ..... . .. . . . . . ... . . .. .. . . . . . .. . ... . . . . .. . . . . .. . . . . . . . . . . ... . . . . . . . . .. . . . . . . . ... . . . . . .. . .. ..... . . .. . . . . . . . . .. . ............ ... . . . . . .. ... . .. . . . . . . .. . .. . . . . . . . . ... . . .
lowQualScore : 0 22222222 77 3333333 7 7 7 7 22 7 7 333 88 7 7 7 7 7 7 7 7 7 99 7 7 7 7 99 7 7 000 99 7 7 7 000 7 99 7 7 7 7 7 7 7 7 7 7 555 5 777 222222 7 333 22 7 22 7 7 88 7 7 777 2 7 7 7 88 7 7 7 7 22 7 7 2222 7 7 222 7 3 7 7 7 3 7 7 7 7 22 7 333 22 7 7 7 7 7 7 7 3 888888 7 7 7 777 7 7 7 7 7 7 7 8888 0 7 3 7 222222 7 7 7 22 2222 2222 7 777 99 7 6 7 7 7 3 7 7 99 7 66 7 3 0000 4 1 4 9 22 4 4 1 2 0 66 99 8 0 0 999 0 0 5 4 2 0 99 0 0 0 0 0 0 0 22 55555 0 0 0 999 0 0 0 0 0 0 0 4 4 4 4 9 4 4 4 4 4 4 99 0 000 0 99 99 0 0 0 0 0 0 0 666 0 0 4 0 0 0 99 0 0 99 7 7 99 33333 7 99 3 7 7 7 7 444 7 7 99 99 7 7 7 7 7 11 7 000 7 7 7 7 99 7 7 7 7 99 0 7 7 9 7 7 7 7 7 7 333 7 7 7 7 7 7 7 7 22 7 7 7 7 7 7 7 777 7 7 1 4 7 77 7 99 55555 0 0 99 0 0 0 0 0 4 0 0 99 0 888888888888 888 0 0 0 5 7 66 000 7 99 7 7 7 7 7 3 99 7 99 7 7 7 7 7 7 0 7 000 7 7 7
consensus : GCGGAAG-TTTA-----GTAATGAGGT-CTACAG-------GTAT-ATAAAGCGGGGCGCGGT-GCATTG-GCAGTCACTTT-CGACA-TCATG-T-CAGA--CA-AGTTA-CCT-AGTGGACTT-CCACGC-AGTT-ATA-TTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-GA-TCA-G--CT-GAA-CAGAC---AA--C-GGCAG-CGT-GAATTACAAC-TCC--GCAGAGA-GAA-TCAACG-GCG-AC-T-ACAGTATT-TACA-GCGG-GGAGGG-G-GAAAAAA---GAAAC------TCA-TTTCGGATTATTAC---AAAAT--TCAAC-TGGAACGAG--GGCGTCAAT-C-ACGGAAA--TTTAAAGT-CAAGGAAA-ATGTCTACAATG---TTGCCATCAAGCCTATCCCGGA-GA-AA-GAA--AACA-CA-GCCT-T-CA--TTCGTCG-CC-TCTTCC---GG-GA-TATGC-TNAAAAATGTGAAAAC-A-GGAAATGCAG-TGCAACCCCAA-TG-A-TT-ATCT--ACGTTT-GAATATTCGGCA-C--C-GTCTCTGG-ACT-CTGA-TATTTG-GTATGAATTTAC-GCAG-TCAAAACA-GCT-N----AACGAGGACAAAA-TT-CTG-AA---CAAAATA-GAA-TCCG-TGCA-GCAATC-TAA-AAAGGAATTCCT-AATCAC---AGACGGGGCCGTGCAGTTT-GATTTTTTC-CATGTGAAA---ATACCCACAAG-GCAG-CGGAGG---GAGAT----CTA-A---AAA--CA-TCTGCATGTGGATAA-AGAGAAATTCCAAAAC-TCC-AAGAGAGCGAT--CG-TT--CGC-ATTCAAAATCCTGACGATTCAT-T--GTGTCTACCCCGGGCTATTGTGG-TAG-CGCGTC--TACA-CAG-CCAGAAATCAAATGACCCGGCATGGGAAACGA-AATGGNTAA--GAA-TGNGGNANGGG-GATA-CACAGACTCTCGAC-CAGAAA--CGAC-AA-GCGA-T-AGCCT-TGATG-GAACAAGCNGGG-TGTGCT-----ATGAA-CCAA-CC-GTGTGGGCCTC-GTGAATGGGG-G-CAATTACA-G-C-AGGCGCTCG-CCC-GCAATATCG-ATTGAAAA-T-ATTTCAATTCAAAACG-AATA-CATCTCGTTT-GCG-ACT-GGAACCTA-T-TTACAAAGGA--CAGG-GGAACGGGA-CTTGTTT--GAATA--TCC-TGCTGG-ATAA-C-GAG-CA-TTA-CGATGCC-AT-T-GTCTCTATGC-CCGGAGTGACGGAAAATC-AATACTATT-GCG--ATTATTGCG-ATG-TTGG--TTATAG-AAATA-TTGA--AGA---T-CA-CCGGAC--CGTGTGTCCTCATC-G-A-TGCT-CGTTT-T-GTTTAGCCGA-CACCCCCTGTACCCCGGACGGGACTCAGACGA--ATTGC--CCTCA-TTG-TAAAGGA-TTTTT-C-AGAAATGCG-GCTTGTT-ACC---AG-AACCATTT-AAAACC-CTACAGC-AG--TAA-TACAA-C-GACCACGGT-G--TGCAGTTTAATG-GGGCGCTGTGACCAGTGTAA-GAAATGGATGTCCAAGCAA-TTAT-TAAAACGCC-ACGCTTG-TGGAGG-TCAAACACAATGCCGC-A-TCTGTC-AAAAAGTCGT-CACCATGCC-TCATCACTGCTTTGTACAGACG-AAACCCA-AACCTAAGAAAGAAAAGG-AC-TTG-AAAATGTACAT--TTATTACG-ATTTTG-AAT-GCAGTCAGGAAA-AC-GGAA-TT-CACA---T-CCCAAT-TTAT-GCGT-GGC--AG-ATCGTGT--GTGTCA-----AC-A-TTG--CGACAGT-CTGGA-TAT-C-GACA-AGCCCTG-TCCTC-ATTGT--ANAGGATTT-----G-----CAACGGCG---CTT-CATATTTCA-AGGACCCGACACGT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGT--CCGA-GACC-GACGA-G-CAA-GGCTATGTGGAA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCCCACAATTT-CAAAGGAT---A-CG-ATGGGCAGTTTA-TTTTGAATTACCTG
Reference ( family-4236 ) : GCGGAAG-TTTA-----GTAATGAGGT-CTACAG-------GTAT-ATAAAGCGGGGCGCGGT-GCATTG-GCAGTCACTTT-CGACA-TCATG-T-CAGA--CA-AGTTA-CCT-AGTGGACTT-CCACGC-AGTT-ATA-TTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-GA-TCA-G--CT-GAA-CAGAC---AA--C-GGCAG-CGT-GAATTACAAC-TCC--GCAGAGA-GAA-TCAACG-GCG-AC-T-ACAGTATT-TACA-GCGG-GGAGGG-G-GAAAAAA---GAAAC------TCA-TTTCGGATTATTAC---AAAAT--TCAAC-TGGAACGAG--GGCGTCAAT-C-ACGGAAA--TTTAAAGT-CAAGGAAA-ATGTCTACAATG---TTGCCATCAAGCCTATCCCGGA-GA-AA-GAA--AACA-CA-GCCT-T-CA--TTCGTCG-CC-TCTTCC---GG-GA-TATGC-TNAAAAATGTGAAAAC-A-GGAAATGCAG-TGCAACCCCAA-TG-A-TT-ATCT--ACGTTT-GAATATTCGGCA-C--C-GTCTCTGG-ACT-CTGA-TATTTG-GTATGAATTTAC-GCAG-TCAAAACA-GCT-N----AACGAGGACAAAA-TT-CTG-AA---CAAAATA-GAA-TCCG-TGCA-GCAATC-TAA-AAAGGAATTCCT-AATCAC---AGACGGGGCCGTGCAGTTT-GATTTTTTC-CATGTGAAA---ATACCCACAAG-GCAG-CGGAGG---GAGAT----CTA-A---AAA--CA-TCTGCATGTGGATAA-AGAGAAATTCCAAAAC-TCC-AAGAGAGCGAT--CG-TT--CGC-ATTCAAAATCCTGACGATTCAT-T--GTGTCTACCCCGGGCTATTGTGG-TAG-CGCGTC--TACA-CAG-CCAGAAATCAAATGACCCGGCATGGGAAACGA-AATGGNTAA--GAA-TGNGGNNNGGG-GATA-CACAGACTCTCGAC-CAGAAA--CGAC-AA-GCGA-T-AGCCT-TGATG-GAACAAGCNGGG-TGTGCT-----ATGAA-CCAA-CC-GTGTGGGCCTC-GTGAATGGGG-G-CAATTACA-G-C-AGGCGCTCG-CCC-GCAATATCG-ATTGAAAA-T-ATTTCAATTCAAAACG-AATA-CATCTCGTTT-GCG-ACT-GGAACCTA-T-TTACAAAGGA--CAGG-GGAACGGGA-CTTGTTT--GAATA--TCC-TGCTGG-ATAA-C-GAG-CA-TTA-CGATGCC-AT-T-GTCTCTATGC-CCGGAGTGACGGAAAATC-AATACTATT-GCG--ATTATTGCG-ATG-TTGG--TTATAG-AAATA-TTGA--AGA---T-CA-CCGGAC--CGTGTGTCCTCATC-G-A-TGCT-CGTTT-T-GTTTAGCCGA-CACCCCCTGTACCCCGGACGGGACTCAGACGA--ATTGC--CCTCA-TTG-TAAAGGA-TTTTT-C-AGAAATGCG-GCTTGTT-ACC---AG-AACCATTT-AAAACC-CTACAGC-AG--TAA-TACAA-C-GACCACGGT-G--TGCAGTTTAATG-GGGCGCTGTGACCAGTGTAA-GAAATGGATGTCCAAGCAA-TTAT-TAAAACGCC-ACGCTTG-TGGAGG-TCAAACACAATGCCGC-A-TCTGTC-AAAAAGTCGT-CACCATGCC-TCATCACTGCTTTGTACAGACG-AAACCCA-AACCTAAGAAAGAAAAGG-AC-TTG-AAAATGTACAT--TTATTACG-ATTTTG-AAT-GCAGTCAGGAAA-AC-GGAA-TT-CACA---T-CCCAAT-TTAT-GCGT-GGC--AG-ATCGTGT--GTGTCA-----AC-A-TTG--CGACAGT-CTGGA-TAT-C-GACA-AGCCCTG-TCCTC-ATTGT--ANAGGATTT-----A-----CAACGGCG---CTT-CATATTTCA-AGGACCCGACACGT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGT--CCGA-GACC-GACGA-G-CAA-GGCTATGTGGAA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCCCACAATTT-CAAAGGAT---A-CG-ATGGGCAGTTTA-TTTTGAATTACCTG
gi|1 : GAAGATTTA-----G--GTGAGGT-CTAC-G-------GTATTATAA-GCGGGGCGCAGT-GCATTG-GCAGTCACTTT-CGACA-TCATG-T-CAGA--CA-AGTTAACCT-AGTGGACTT-CCACGC-AGTT-ATA-T-GAAC-AGCG-ATGAAGA--T-TTTTGAATTGA-TCA-G--CT-GAA-CAGAC---AA--CCGGCAG-CGT-GAATTACAAC-TCC--GCAGAGA-GAA-TCAACG-GCG-AC-T-ACAGTATT-TACA-GCGG-GGAGGG-G-GGAAAAA----AAAC------TCA-TTTCGGAT-ATTA----AAAAT--TCAAC-TGGAACGAG--GGCGTCAAT-C-ACGGAAAAGTTTAAATT-CAAGGAAA--TGTCTACAATG---TTGCCATCAAACCTATCCCGGA-GA-AA-GAA--AACA-CA-GCCT-T-CA--TTCGTCG-CC-TCTTC----GG-GA-TATGC-TGAAAAATGTGAAA-C-A-GGAAATGCAG-TGCAACTCCAA-TG-A--T-ATCT--ACGTTT-GATTATTCGG---C--C-GTCTCTGG-ATT-CTGATTATTTG-GTATGAATTTAC-GC-G-TCAAAACT-GCT-G----AAC-AGGACAAAA-TT-CTG-AA---CAAAATA-G-A-TTCG-TGCA-GCAATC-TAA-AAAGAGATTTTT-GATC-CAGGAGACGGGA--GTGCAGTTT-GA-TTTTTC-CAAGTG-AA---ATATCCACAAG-GCAG-CGGGGGAAAGAGA-------A-A---AAA--CA-TCTGCATGTGGATAA-AGAGAAA-TCCAAGACTTCC-AAGAGAGCGAT--CGTTT--CGCAATCCAAAATCCT-ACGATTCAT-T--GTGTCTACCC--GGCTATTGTGG-TAGTCGCGTC--TACAGCAC-CCAGAAATCAAA-GATCCCGCATGGGAATCAATAATGGTTAA--GAA-TGCGG-AAGGA-GATA-CACAGAGTGTTGACACAGAAA--CAAC-AA-GCGA-T-AGCGC-TGATA-GAACAAGCGGGGTTGTGCT-----ATGAA-CCAA-CC-GTGTGGGCCTC-GTGAATGGGG-A-CAATTACAGG-CAAGGCGCTCG-TCC-CTAATATAG-A-TGAAGA-TAATTTCAATTTAAAACG-AATA-CATCTCGTTT-GCG-ACT-GGAAACTA-T-TTACAAGGAA--TGGG-GGACGGGGA-CTTGTTTTGAAATA--TCCTTGCTGG-ATAA-C-GAG-CA-TTA-CGATGCT-TTGT-GTCTCTATGC-CTGGAGTGACGGAAAATC-AATACTATT-GCG--ATTATTGCG-ATGTTTGG--TTATAG-AAATATTTGA--AGA---T-CA-CCGGAC--CGTGTGTCCTCATC-G-A-TGCT-CGTTT-T-GTTTAGCCG---ACCCCCTGTA--CCGGACGGGGCTCAGACGA--ATTGC--CTCTA-TTG-TAAAGGA-TTTTT-CAAGAAATGCA-GCTTGTT-ATC---AG-AACCATTT-AAAACC-CTACAAC-AG--TAA-TACAA-C-GACCACGGT-G--TGCAGTTTAATG-GGGCGCTGTGACCAGTGTAA-GAAATGGATGTCCAAACAA-T--T-TAAAACGCC-ATGCTTG-TGGAGG-TCAAACACAATG-CGCAA-TCTGTC-AAAAAGTCGT-CACCATGCC-TCATCACTGCTTTGTA-AGACG-AAACCCA-AACCTAAAGAAACAAAGG-AC-TTG-AAAATGTACAT--TTATTACG-A-TTTG-AAT-GCAGTCAGGAAA-AC-GGAA-TT-CACA---T-CCCAAT-T--T-GCGT-GGC--AGAAACGTGT--GTGTCA-----AC-ATTTG--CGACAGT-CTGGA-TAT-C-GACA-AGCCCTG-TCCTCAATTGTCAAAGGGATCT-----------CAACGGCACGTCTT-CATATTTCA-GGGA-CTGCAACGT-T--AAAACAGT---TTATG-AATTG--TCTTACAGT--CCGA-GACC---CGACG-CAA-GGCGATGTGGAA--C-TCAAC--GACGATGCAAGCCACC-A-TC-A--TGCCCAC-ATTT-CAAAGGAT---A-CG-ATGGGCAGTTTA-TTTTGAATTACCTG
gi|10 : AGACAGGGAA-AC-GGAA-TTTCACA---C-CCCAAT-TCGTAGCGTAGGC--AG-ATCG-GT--GTGTCAGATCGACTC-TTGATCGACAAA-CTTTACTATTC-GACA-A--CCTGCTCTTC-ATTGT--ATAGGATTT-----GGATCGCAACGCCG---CTT-CGTATTTCA-AGGAACAGACACGT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGT--CCGA-GGGC-GACGA-G-AAA-AGCTATGTGGAA--C-TCAAA--CACGATG-AAGCCAGC-A-TC-A-TTGCACACAATTT-CAAAGGAT---G-CG-ATGGGCAGTTTATTTTTAAATTACCTGgttcacaggcggtgtatcaaaccccgttatcctgattgggagtaaaatcttatccatgcaagtcttgggctgagatttatcgattcttacaactttctgccttttccctcgccaagatgcctctgctttcggcttaacggaattgaaaaaaggatattttcctcactttttcaaacacgaccgatgcaaccagcagtatgttggcgtctttacccgcccctcatttctacaatcctgatgatatgtctcgccgccaatctgtgaagcttct
gi|11 : CGATTCAT-T--GTGTCTACCACGGGCTATTGTGG-TAG-CGCGTC--TACA-CAC-CTCGAAATCAAATGACCTGGCATGGGAAACGA-AATGGAAAC--GGA-TGAGGCTTGGG-GATA-CACAGGCTCTCGAC-CAGAAA--CGAC-AA-GCGG-A-AGCCT-TGATG-GAACAAGCTGAG-TGTGCT-----ATGAA-TCAA-CC-GTGTG---------GAATGGGG-G-CAATTACA-G-C-AGGCGCTCGCCCC-GCAGTATCG-ATTGAAAA-T-ATTTCAATTCAAAACG-AATA-CATCTCGTTT-GCG-ACT-GGAACCTA-T-TTTCAAAGgttcgcacggcttgtatcaaacccaccgtcatcttcaacggcagtaaaatcttattcatgcaagtcttgcgtgtttgagattcgtcgattcttacaattttctgtccttggccctcgcc
gi|12 : GCGGAAA-TTTACAGT-GTAATGAGGT--TATAGTAAAA--GTAT-ATAAAGCGGTGCGTGGT-GCATTT-GCAGTCACTTT-CGACA-TCATG-T-CAGA--CA-AGTTA-CCT-AGTGGACTT-CCACGC-AGTT-ATA-CTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-GA-TCA-G--CT-GAA-CAGAC---AA--C-GGGAG-CGT-GAATTAC---------------A-GAA-TCAACG-GTG-
gi|13 : tGTGT--GTGTCA-----AC-A-TTG--CGACAGT-TTGGA-TAA-C-GACA-AGTACTG-TCCTC-ATTGT--ATAGGATTT-----GGATGTCAACGGCG---CTT-CATATTTCA-AGGACCC
gi|15 : TGACCAGTGTAG-GAAATGGATGTCCAAGCAC-TT
gi|16 : -CTGA-TATTTG-GTACGAATTTAC-GCAG-TCAAA
gi|2 : GACTT-CCACGC-AGTT-ATA-TTGAAC-AGCGGATTGAGAGCT-TTTTTAAT-GA-TCAAG--CT-GAAACAGAC---AA--C-GGCAAACGT-GAATTAACCC-TCT--GCAGAGA-GAA-TCAACG-GCG-AC-T-ACA-TATT-T-CA-GCGG-GGCGGG-G-GCAAAAA---GAA-C------TCA-TT-CGGATTATTAC---AA-----TCAAC-TG--ACGAG--GGCGTCAAT-C-ACGGAAA--TTTAA-GT-CAAGGAAA-ATGTATACAATG---TTTCCATCAAGCC-ATCCCGGA-GA-AAAGAA--AACA-CAAGCCT-T-CA--TTCGTCG-CC-TCTTCC---CG-GA-TATGC-TTAAAA-TGTTGAAACTA-GGAAATGCAG-TGCAACCC-AA-TG-A-TT-ATCT--ACGTTT-GAATATTCGGCA-CACC-GTCTCTGGCACT-CTGA-TATT-G-GTATGA-TTTAC-ACAG-TCAAAACAAGCT-TCAAAAACGAG-ACAAAACTT-CTG-AA---CAAAATAAGAA-TCCGCTGCA-GCA-TCGTAA-AAAGGAATTCCTTAATCAA---CGCCGGGGCCGTGCAGTTT-GATTTTTTC-CATGTGAAATTAATACCCA--AG-GCAG-CGG--------GCTTGCACTA-ACAAAAA--CAATCTCC-TGTGGATAA-AGA-AAATTC-AAAAC-TC--AAGAGAGCGAT--CG-TTTCCGC-ATT-ACAACCCTGACGATTCAT-T--GTGTCTACCCGGGGCTATTGTG--TAG-CGCGTC--TACA-CAGGCCAGAAATCAAATGACCCGGT-TAGGGAACGA-A-TGGCTAA--GAAATGCGGAAAAGGAGATT-CA-AAACTCTCGAC-CAGAAC--CGAG-AA-GCGA-TTAGCCTCTGATG-GAACAAGGTGGG--GTGCT-----ATGAA-TCAA-CC-GTGTGG-CCT--GTGAATGGGGAG-CAATCAGA-G-T-GTGCGCTCG-CCCCGCAGT-TCG--CTGAAAA-T-ATTT--ATTTAAAACG-AATAACATCTCGTTT-GCG-ACTTGGAAC-TA-TCTTACAAAGGA--CAGG-GGGACGGGAACTTGTTT--GAATA--TCC-TGCTGG-ATA--C-GAGGCA-T-A-CGATGCT--T-T-GTGT-TATGC-CCGGAGTGACG-AAAACA-AATACTATT-GCG--ATTATTGCG-ATG-TTGGGCTAACAG-TCACA-TTGA--AGAA--T-CA-TCAGACGCCGTGTGTCTCTATC-G-A-TGCTTCGTTT-TTGTTTAGCCGA-CACCCCCTGTAACCCGGACGGAACTCAGACGA--ATTGCCTCCTCATTTG-TAAAGGACTTTTT-C-AGAAATGCA-GCTTGTT-A-C---AG-A--CATTT-AAAACC-CTACAGCAAG--TAATTACAACC-GACCACGGT-G--T-CAG-TTAATG-GGGCGCTGTGACC-GTGTAA-GAAATGGATG----AGCACTTTAT-TAAAACGCCAATGCTTGCTGGAGG--CAAAC-TAATGCCG----TCTGTCAAAAAAGTCGTCCACCATGCC-TCCTCACTGCTTTGTACAG-CG-AAACCCA-AACCTAAAGAAGAAAAGG-ACTTTG-AACATGTACAT--TTTTTACGCATTTTGCCATGGCAGTCAGGAAA-AC-GGAA-TT-CACAATTT-CCCCAT-TTAT-GC-T-GGCAAAG-AACGTGTTGGTGTTC-----AC-A-TTG--CGACAGTCCTGGA-TAT-C-GACA-AGCCT---TCCTC-ATTGT--CAAGGATT------------CAACGGCG---CTT-T-CATTTCA-AGGACCCGACACGT-TAAAAAACAG----TTATG-GAATGGCTCTTACAGTTCCCG--GCCC-GACGA-G-CAA-GGCTATGTG--A--T-TC-AA--CACG-TG-AAGCCACCGA-TCAA-TTGCCCACAATTT-CAAA-GAT---ATCG-AAGGACAGTTTA-TTTTGAATTACCTG
gi|3 : TGAGGTGTTACAG-------GTA--ATAAAGCGGG-CGCAGG-CCATTG-GCACTCACTTT-CGACAATCATG-TTCAGA--CA-AGGTA-CCTGAGTGGACT--CCACGC-AGT--ATAGTTGAACCAGCG-ATTGAGA--T-TTTTGACT-GA-TCA-G--CTTGAA-CAGAC---AAAAC-GGCAG-CGT-GAATTACA-C-TCC--GCAGAGATGAA-TCA-CGAGCG-AC-TGACAGTATT-TACA-GCGG-GAGGGG-C-TAAAAAA---GAAAC-------CA-TTTCGGATTATTAC---AAAAT--TCAACGTGGA-CGAG--GGCGTCAAT-CCACGGAAAA-TTTAAAGT-CAAGGAAAGATGTC-ACAATGCCCTTGC-ATCAAACCCATCCGAGA-GA-AA-GAATAAATA-CA-GCCT-TTCA--TTCGTCGGCCGTCTTCCCGGGGCGA-TATGT-GAAGAAAT-TGAAAAC-A-AGAAGTGCAG-TGCAACCCCAAATG-A-TTGATCTTGACGTTT---ATATTCGG-A-C--CTGTCTCTGG-ACT-CTGA-TATTTG-GTATGAATTTAC-GCAG-TCAAA-CA-GCT-C----AACGAGGACAAAA-TT-CTG-AA---CAAAATA-GAA-TCCG-T-CA-GCAATC-TAA-AAAGGAATTCTA-AATCAC---AGACGGGGCCGTTCAGTTT-GATTTTTTC-CATGTG-AC---ATATCCACGAA-GCAG-CGGA-G---GAGAT----CTA-A---AAAACCA-TCTGCATGTG--TAACGGAAAAATTTCAGACT-TCC-AAGAGAGCGAT--CG-TT--CGC-ATGAAACAACCTGACGAGTCATGTTGGTGTCTACCCC-GGCTATTGGGGTTAG-CGCGTCTGTACA-CAG-CCGAGAATCAAATGACCCGGGCTGTGAAACAA-AATGGTTAA--GAA-TGCGGGAA-GG-AATA-CACAGAGTGT--GC-CAGAAAACCAACGAA-GCGA-T-AACCT-TGATGCGAACAAGCGGGG-T-TGCT-----AGGAA-CCAAGCC-GTGTGGG-CTC-GTGAATGGGG-ACCAATTACA-GAT-AGGCGCTCG-CCC-GCAATATCGTATTGAAGA-T-ATTTCAATTTAAAACGCAATA-CATCTCGTTTGGCGAACT-GGAACCTATT-TTACAAGGGA--CAGG-G--ACGGGA-GTTGTTT--GAATATTTCC-TGCTGG-ATAA-C-GAG-CA-TTA-CGATG-C-AT-TGGTCTCTATGC-CCGGAGTGACGG--AATCGAATACTATT-GCG--ATTATTGTG-ATG-TTGG--TTATAG-AAATA-TTGA--AGAGATC-CA-CCGGAC--CGTGTGTCCTCATCAG-A-GGCT-CATTT-T-GTTTAGC--A-CA-CCCCTGTACCC--GACGGGACTCAGACGGATATTG---TCTCA-TTG-TAAAGGA-TTTTTGC-AGAAATGCA-GCTTGTT-ACC---AGAAAACATCT-AGAACCGCTACAGC-AG--TAA-TACAA-CGGACCACGGT-G--TGCAG-TTAATGAGGGCGCTGTGACCAGTGTAAGGAAAT-GATGTCCAAACAA-TTATGTAAAACGTC-ATGCTTG-TGGAGGTTCAAATACAATGCCGC-AGTCTGTC--AAAAGTCGT-CACCATGCCTTCCTCACTGCTTGTTACAGACGAAAACCCATAACATAAGAAAGAAAAGGTAC-TTG-AAAATGTACATCCCTCTTACG-ATTTTG-AAT-GCAGTCAGGAAAGAC-GGAAGTT-CACA---T-CCCCATGTTATCGTGT-GGCAGAG-ATC-TG---GTGTCA-----AC-A-TTG--CGATAGT-TTAGATTAT-CGGACA-AGCCCTG--GCTC-ATTGTC-AAAGGATAC-----T-----CAACGGCG---CTTGCATATTTCATA----CCGACACGTGTA-AAAACAGTTTGTTATGCGAATGGCTCTTACAGT--CCGAGGACC-GACGA-GTCAAGGGCGATGTGGAAAGCGTCAAAACCAC-ATG-AAGCCACC-AGTC-ACTTGCCCACAATTTGCAAAGGATTAGA-CGAATGGgttcacacggcctgtatcaaactccgtcatcctcaacggcagtaaaatccttatccagaagtcttggggttgagattcatgcgattcttacaacttctctgccttttgctctcggccaagatgccctctgctttcggattaacggaattgaaaaaagatattagtcctcacttttcaacacgaccggagaaccagcagtattgggtccttaccccgcgctcatcttctacaatcctgacgattgtcgagaccaatcgtggaagccttcta
gi|4 : atttatgtGCGGAAG-TTTA-----G--GTGAGGT-CTACAG-------GTAT-ATAAAGCGGGGCGCAGT-GCATTG--TAGTCACTTT-CGACA-TCATG-T-CAGA--CA-AGTTA-C-T-AGTG-ACTT-CCACGC-AGTT-ATA-TTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-GA-TCA-G--CT-GAA-CAGAC---AA--C-GGCAG-CGT-GAATTACAAC-TCC--GCAGAGA-GAA-TCAACG-GCG-AC-T-ACAATATT-TACA-GCGG-GGAGGG-GCAAAAAAA---GAAAC------TCA-TTTCGGATTATTACC--AAAAT--TCAAC-TGGAACGAG--GGCGTCAAT-C-ACGGAAA--TTTAAAGT-CAAGGAAA-ATGTCTACAATG---T-GCCATCAAGGCTATTCCAGA-GA-AA-GAA--AACA-CA-GCCT-T-CA--TTCGTCG-CC-TCTTCC---GG-GA-TATGC-TGAAAAATGTGAA--C-A-GGAAATGCAG-TGCAACCCCAA-TG-A-TT-ATCT--ACGTTT-GAATATTCGGCA-C--C-GTCTCTGG-ACT-CTGA-TATTTG-GTATGAATTTAC-GCAG-TCAAAACA-GCT-G----AACGAGGACAAAA-TT-CTG-AA---CAAAATA-GAAATCCG-TGCA-GCAATC-TAA-AAAGGAATTCCT-AATCAC---AGACGGG-CCGTGCAGTTT-GATTTTTTC-CATGTCAAA---ATACCCACAAG-GCAG-CGGAGG----AGAT----CTA-A---AAA--CA-TCTGCATGTGG-TAA-AGAGAAATTTCAAAAC-TCC-AAGAGAGCGAT--CG-TT--CGC-ATTCAAAATCCTGACGATTCAT-T--GTGTCTACCCCGGGCTATTGTGG-TAGACGCGAC--TACA-CAG-TCAGAAATCAAATGACCC-GCATGGGAAACGA-AATGGCTAA--GAA-TGCGGAAAGGA-GATA-CACGGAGTGTTGAC-CAGAAA--CAAC-AA-GCGA-T-AACCT-TGATG-GAACAAGCGGGG-TGTGCT-----ATGAA-TCAA-CC-GTGTGGGCCTT-GTGAATGGGC-G-CAATTACA-G-C-AGGCGCTTG-CCC-GCAGTATCG-ATTGAAAA-T-ATTTCAGTTCAAAACG-AATA-CATCTCGTTT-GCG-ACT-GGAACCTA-T-TTACAAAGGA--CAGG-GGAACGGGA-CTTGTTT--G-ATA--TCC-TGCTGG-ATAA-C-GAG-CA-TTA-CGATGCC-AT-T-GTTTCTATGG-CCGGAGTGACGGAAAATC-AATACTATT-GCG--ATTATTGCG-ATG-TTGG--TTATAGAAAATA-TTGA--AGA---T-CA-CCGGAC--CGTGTGTCCT-ATC-G-A-TGCT-CGTTT-T-GTTTAGCCGA-TACCCCCTGTACCCCAGACGGGACTCAGACGA--ATTGC--TCGCA-TTGTTAAAGGA-TTTTT-C-AGAAATGCA-GC-TGTT-ACCAAAAG-AACCATTTAAAAACC-CTACAGC-AG--TAA-TACAA-C-GACCACGGTGG--TGCAGTTTAATG-GGGCGCTGTGACCAGTGTAA-GAAATGGATGTCAAAGAAA-TTAT-TAAAACGCC-ATGCTTG-TGGAGG-TCAAATACAATGCCGC-A-TCTGTC-AAAAAGTCGT-CACCATGCC-TCATCACTGCTTTGTACAGACG-AAACCCA-AACCTAAGAAAGAAAAGG-AT-TTGAAAAATGTACAT--TTATTACG-ATTTTG-AAT-GCAGTCAGGAAA-ACGGGAA-TT-CACA---T-CCCAAT-TTAT-GTGT-GGC--AG-ATCGTGT--GTGTCA-----AC-A-TTG--TGACAGT-CTGGA-TAT-C-GACA-AACCCTG-TCCTC-ATTGT--CAAGGATCT-----------CAACGGCG---CTT-CATATTTCA-AGGACCCGACACGT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGT--CCGA-GACCAGACG--G-CAA-GGCGATGTGGAA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCCCAC-ATTT-C-AAGGAT---A-CG-ATGGGCAGTTTA--TTTGAATTACCTG
gi|5 : GGAAG-TTTAACAGTGTAATGAGGT--TATAGTAAAAAGGTAT-ATAAAGCGGG-CGCGAT-GCATTCTGTAGTCACTTT-CGACA-TCAT----TAGAA-CA-AGTTT-ACT-AGTGGACTT-C-ACGC-AGTT-ATA-TTGAAC-AGCG-ATTGAGA--TGTTTTGAAT-GAATCA-G--CT-GAA-CAGAC---AA--C-GGCAG-CGTCGAATTACAACCTCC--GCAGAGA-GAA--CAACG-G-G-ACCT-AC-GT-TT-TACAAGCGG-GGAAGGCG-GCAAAAA---GAAAC------TCAATTTCGGATTATTAC---AAAATATTCAAC-TGGAACGGACAGGCGTCAAT-C---GGAAA--TTTAAAGT-CA-GGAAA-ATGTCTA-AATG---TTGCCATCAAGCCTATTCCAGAAGACAA-GAAG-AACATCA-GC-T-T-CAAATTCGTCG-CC-TCTTCC---GG-GAATATGC-T--AAAAT-TGAAA-C-A-GGAAATGCAG-TGCAAACCTAA-CGGA-TT-ATCT--ACGTTT-GAATATTCGGCA-C--C-CTCTCTGG-ATTTCTGA-TATTTG-GTATGAATT-AC-GCAG-TCAACACA-GCT-C----AACGAGGACAGAA-TTGCTGCAA---CAAA-TA-GAA-TCCG-TGCAAGCAATC-TAA-AA-GGAAT--CT-AATCAC----GACGGCGCGGTGCAGTTTTGATTTTTTCACAT-TGAAA---ATACC-ACAAGAGCAGGCGGAGG---GAGAT----CTAGA---AAA--CA-TCTGCATGCTGGTAA-AGTGAAAATTCAAGAC-TCC-AAGAGAGCGAT--CG-TT--CGC-ATTAACAACCCTAACGATTCAT----GTGTCT--CCCGGGCTATTGTTG-TAG-C-CGTC---ACA-AAG-C-AGAAATCAA-TGACCCG-CATGGGAAAC-A-AATGGA-AACGGCA-TGAGGCTTGGG-GATA-CACAGGCTCTCGAC-AGAAAA--CGAC-AAAGCGAGT-AGCCT-TGATT-GAACAGGGAGGG--GTGCTGGTCTATGAAATCAA-CCCGCGTGGGCCTCCGTGAATGGGG-G--AATAACACG-C-AGGCCTTTA-TCC-CCAATATCG-ATTGAAAAAT-ATTTCA-TTTAAAACGTAATG-CATCTCGTTT-GCG-ACT-GGATCCTA-T-TTACAAAGGAAGCAGGCGGAA-GGGA-CTTGTTTT-GAATAA-TCC-TGCTGGGATAA-CCGAG-CAATTAACGATGCCCAT-T-GTGTCTATGCACCGGAGTG-CGGAAA-TC-AATACTATTAGCTTTATTATTGCGGATG-TTGG--TTATAG-AAAT--TTG---AGA---TACA-CCGGAC--CGTCTGCTCTCATC-GTA-TGCT-CGTTTGT-GTTTA-CCGA-CACCCCCTGTACCCCAGACGGGACTCAGACGA--ATTGC--TCTCA-TTG-T-AAGGA-TTTTT-C-AGAAATGCGAACTTGCTAACC---AG--ACCATTT-AAAACC-CTACAGC-AAGCTAA-TAAAA-C-GA-CACGGT-GCTCACAGTT
gi|6 : TTGTTG-TAG-CGCGTC--TACA-CAC-CCAGAAATCAAATGACCCGGAATGGGAAAAGA-AATGGTTAC--GCA-TGATAAAGGGA-GATTTCA-AAACACTCGAT-CAGAAA--CGAG-AA-GCGA-T-AGCAT-TGATG-GAACAAGCTGGG-TGTGCT-----ATTAA-CCAA-CC-GTGCGGGCCAC-GTGAATGGGA-G-CAATTACA-A-C-AGGCGCTTGTCCC-GCAATATCG-CTTGAAAA-T-ATTTCAGTTCAAAACG-AATA-TATCTCGTTT-GTG-ACT-GGAAGCTA-T-TTACAAAGGA--CAGG-G-ATCGGGA-CTTGTTT--GAATA--TCC-TGCTGG-ATAAAC-GAG-CA-TTA-CGATGC--AT-T-GTCTCTATGG-CCGGAGTGACGGAAAATC-AATACTATT-GCG--ATTATTGCG-ATGGTTGG--CTACAG-TCACA-TTGAGAAGA---A-CATCCGGAC--CGT-TGCTCTCATC-G-ACTGCT-CGTTT---GTTTAGCCGAACACCCCCTGTACCCCGGACGGGACTCAGACGA--ATTGC--TCTCA-TTG-TAAAGGA-TTTTT-C-AGAAATGCA-GCTTGTT-ACC---AG-AACCATTT-AAAACC-CTACAGC-AG--TAA-TACAA-C-GACCACGGT-G--TGCAGTTTA----GGGCGCTGTGACGAGTGTCA-GAAATGGATGACCAAGAAA-TTAT-TAAAAGGAC-ACGCGTG-TGAAGG-TTAAACACAATGCCGC-A-TCTGTC-AAAAAGTCGT-CCCCATGCC-CCATCGCTGCTTTGTACAGATG-AAACCCA-AACCCAAGAAAGAAAAGG-AC-TTG-AAAATGTACAT--TTATTACG-ATTTTT-AAA-GCAGTCAAGAAA-AC-GGCA-TA-CACAC--T-CCAAAT-CTAT-GCGT-GGC--AG-ATCGTGT--GTGTCA-----AC-A-TTG--CGACAGT-TTGGA-TAT-C-GACACCCCCCTG-TCCTC-ATTGT--ATAGGATT------------CAACTGTG---CTT-TATATTTCA-AGGACCCGACACAT-T--AAAACAGT---TTATG-GAATGGCTCTTACAGT--CCGA-GACC-GACGA-G-CAA-GGCTATGTGGAA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCACACAATTT-CAAAGGAT---A-CG-ATGGACAGTTTA-TTTTGAATTACCTG
gi|7 : ggCG-ATTGAAAA-T-ATTTCAGTTCAAAACG-AAAA-CATCTCATT--AAG-ACT-GGAACCTA-T-TTACAAAAGA--CAGG-GGA-CGGGA-CTTACTT--AAATA--TCC-TGCAGG-ATAA-T-GAG-CA-TTA-CGATAGC-AT-T-GTCTCTATGA-CCGGAGTGACAGAAAATC-AATACTATT-GCG--AT----------A-TTGG--CTATAG-AAATA-TTAA--AGA---T-CA-CCGGAC--TGTCTGTTTTCATC-G-A-TGCT-CGTTT-T-GTTTAGCCGA-TACCCCCTGTACCCCGGACGGGACTCAAACGG--ATTGC--CTGCA-TTG-TAAGGGA-TTTTT-T-AGAAATGCG-GCTTGCT-ACC---AG-AACCATTT-CCAACC-CCACAGC-AG--TAG-TACAA-C-CACCACGGT-A--TGCAGTTTAAGG-GGTCGCTGCGACGAGTGCCA-GAAATGGATGCCCAAGCAA-TTAT-TACGAGGCC-ACGCTTG-TGGAGG-TCAAACACAGTGCCAC-A-TCTGTC-AAAAAGTCGT-CGCCATGCC-CCATCACTGCTTTGTACAGATG--AACCCA-AACCTAAAAAGGAAAAGG-AC-TTG-AAAATGTAAAT--TTATTACG-ATTTCG-AAT-CCAGCCAGGAAA-AC-GGAA-TT-CACA---TCCCCAAT-TTAT-GCGT-GGC--AG-ATCGTGT--GTGTCA-----AT-A-TTG--TGACAGT-TTGGA-TAT-C-GAAA-AGCCCCG-TCCTC-ATTGT--ATAGGATTTGGATCG-----CAACGGCG---CTT-CCTATTTCA-AGGACTCGACACGT-T--AAAACACT---TTATG-GAATGGCTCTTACAGT--CAGA-GACC-GACCA-G-AAA-GGCTATGTGGGA--C-TCAAA--CACGATG-AAGCCACC-A-TC-A-TTGCACACAATTT-CAAAGGAT---A-CG-ATGGGCAGTTTA-TTTTGAATTACCTGgttcacacggcttgtatcaaacccaccgtcatcctgaacggcagtaaaatcttatccatgcaaatcttggggttgtgattcatcgattcttacaactttctgccctttgccctcgctaagatgccatctgcttccggattaaccgagctgaaaaaagggtatttccctcactttttcaacacgacagagaaccagtattacgtgggtccttaccccgccgctcatttctacaatcctgacgatatgtccactgccaatcgtgaagctttcta
gi|8 : CGGAAG-ACTG-----GTAATGAGGTGCTACAG-------GTAT-ATAAAGCGGGGCGCAGTTGCTATG-CCAGTCACTTTTCGACA-TCATGGT-CAGGATCACAGTTA-CCT-AGTGGACTTTCCACGCCAGTTTATA-TTGAAC-AGCG-ATTGAGA--T-TTTTGAAT-GA-TCA-GAACT-GAA-CAGACCCCAA--C-CGCAG-CGT-GAATTA-AAC-TTCCGGCAGAGA-GAGCTCAACG-GCGTAC-T-ACAATATTCTA-A-GCGGAGGAGGG-G-GAAAAAAAAGGAAACCGAACTTCA-TTT-GGATTTTTACTCAAAAAT--TCAAC-TGGAACGAT--GGCGTCAATTC-ACGGAAA--TTTAAAGTTCAAGGAAA-ATGTCTACAATG---TTGCCATCAAGCCCATCCCGGA-GA-AA-GAA--AATA-CA-GCCTGT-CA--TTCGTCG-CC-TCTTCG---GG-GA-TATGCGTTAATAATGTGAAAAC-AGGGAAATGCAGTTGCAACCC--A-TA-ATTT-ATCT--ACGTTTGGAATATTCGGCACC--C-GTCTCTGG-ACT-TTGA--ATTTGAGTATGAA-TTACTACAGTTCAAAACAGGCTCT----AACGAGGACAAAA-TT-CTG-AATACCAAAATA-GAA-TCGG-TGCA-GCAATC-TAACAAAGGAATTCCT-AATCAC---AAGAGGGGCCGTGCAGTTT-GA----TTC-CATGTT-CA---ATACCC-C-AG-GCAG-CGGAGG---GAGAT----CAG-A---AAA--CA-TCTGCATGTGGATAA-AGAGAAATTCAAAAAC-TCCAAAGAGAGCGATTCTG-TTA-CGC-ATTCAAAATCCTGA-GATTCA--T--GTGTCTACCCCGGCCT-TTGTAG-TGG-TGCGGCGTTACA-TAG-CCAGAAATCAAAT-ACCTGGCgttcacacagcttgtatcaaacctaccgtcatcgtcaacggcagtgaaatcttatccatgcaagttttggggttgggattcatcgattctcataactttctgccctttgccctagctaagatgccctctgttttcggattaaacgagctgaaaaaaggatatttccctcactttttcaacacgacagaaaaccagcattacgtgggtccttaccacgccc
gi|9 : A--CA-TCTGCATGTGAATAA-GGAAAAATTCAAAAAC-TGC-AAGAGGGCGAT--CG-TT--CGC-ATTCAAAATCCTGAGGATTCTC-T--CTGCTTGCCCCAGGCTATTGTTG-TAG-CGCGTC--TACA-CAG-CCAGAAATCAAACGACCCGGCATGGGAAACGA-AATGGAAAC--GGA-TGAGGCTTGGG-GATA-CACAGGCTTTCGAT-CAGAAA--CGAC-AA-GCGA-T-AGCGC-TGATT-GAACAAGCTGAG-TGTCCT-----ATGAA-CTAA-CC-GTGTGGGCAAC-GTGAATGGGG-G-AAATTACA-G-C-AGGCGCTTC-CCC-GCAATATCG-ATTGAAAA-T-ATTTTAATTCAAAACG-AATA-CAGCTCCTTT-GCG-ATT-GGAACCTA-T-TTACAAAGGA--CAGG-GT-ACGGGA-CTTGTTT--GAATA--TCC-TGCTTG-ATAA-C-GAG-CA-TTA-CGATACC-AT-T-GTGTCTACGC-CCGGAGTGACGGAAAATC-AACACTATT-GCG--ATTATTCCG-ATG-T
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CAGAGAACCAGCAGTATGTGGGTCCTTACCGAGCCGCTCATTTCTAC