lowQualScore : 1111111 111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 6666666666666666666666666 222 3333 1 1 444 111 555555555555 11 1 1 7777777777 111 2222222 55555555555555555555 11111 3333 2 2222222 11 1111 222 1 1111111 333333 111 44444444444 11111 111 222 111 333333 333333333333333333333333333333 22 222 222222222222222222222222222222222222222222222222 222 1 55555 22222 11 222 11 111 11 88888888888888888888888888888888 11 4444444444444444444 1111 444444 1 11 000000000000000000000000000000000000000000000000000000000000000000000000 2 1111 1 2 2 11 1 44444 1 11 33333333333333 11 222222 1 44444444444 1111 22222 222222 111 1111 33333
lowQualScore : 0 33 4 7777777777777777777777777 333 3 11 4444 0 0 555 777 888888888888 3 3 33 0 8 0 7777777777 2 8 8 111 8 6 1111111 44444444444444444444 6 55555 2222 4 99 1111111 6 11 6 5555 111 1 3 6666666 444444 55 000 55555555555 44444 77 5 5 888 5 5 6 6 555 000 333333 99 3 999999999999999999999999999999 8 11 222 111111111111111111111111111111111111111111111111 000 8 2 3 66666 33333 88 8 555 11 111 11 44444444444444444444444444444444 8 3 11 6666666666666666666 0 3333 66 3 444444 6 8 8 8 8 11 0 777777777777777777777777777777777777777777777777777777777777777777777777 6 0 4444 1 3 6 77 2 11 5 5 3 0 5 5 1 5 5 77 00000 0 1 77 5 5 77 5 5 44444444444444 5 33 222222 5 77 5 1 55555555555 5 77 1 4 5 5 5 5 2222 5 77 5 5 5 44444 5 5 77 5 777777 000 6 6666 11111 6
lowQualScore : . .. . ......................... ... . .. .... . . ... ... ............ . . .. . . . .......... . . . ... . . ....... .................... . ..... .... . .. ....... . .. . .... ... . . ....... ...... .. ... ........... ..... .. . . ... . . . . ... ... ...... .. . .............................. . .. ... ................................................ ... . . . ..... ..... .. . ... .. ... .. ................................ . . .. ................... . .... .. . ...... . . . . . .. . ........................................................................ . . .... . . . .. . .. . . . . . . . . . .. ..... . . .. . . .. . . .............. . .. ...... . .. . . ........... . .. . . . . . . .... . .. . . . ..... . . .. . ...... ... . .... ..... .
lowQualScore : 2 88 0 8888888888888888888888888 222 2 00 0000 0 0 000 555 555555555555 2 2 88 0 8 0 8888888888 5 0 0 888 0 7 7777777 55555555555555555555 7 22222 8888 2 22 7777777 7 55 7 0000 555 7 3 2222222 000000 33 000 33333333333 33333 99 7 7 777 7 7 9 3 000 888 555555 22 5 555555555555555555555555555555 0 44 444 000000000000000000000000000000000000000000000000 444 0 8 2 55555 33333 00 0 444 22 888 00 00000000000000000000000000000000 0 2 00 8888888888888888888 8 2222 22 0 888888 0 0 6 0 0 22 8 555555555555555555555555555555555555555555555555555555555555555555555555 7 0 2222 7 7 7 99 9 66 7 3 9 1 7 7 4 7 7 00 00000 0 7 99 7 7 11 7 7 77777777777777 7 66 777777 1 99 7 4 77777777777 7 99 7 3 7 7 7 7 1111 7 99 7 7 7 77777 7 7 99 7 111111 222 7 6666 44444 0
consensus : GTCAGA--ATNTGAAA---A-----TAC----ATTTA-TA-TAT-T-GTGACTTTTTCCCCTG-GACT-TCCTAT-GCGTGACT-TTT---TCCCTTTGAA-CTTTCTT--TCTACATCCTAAG--AA-ATTAGA-TCA---TTACTGAAACCTGTAT-ACATAT-TGCA--CA-TAGTT-T-------ATT--------GG-A--------CA-GTTTC----CCC---TTTCA-TGGGAA--GAAA-------AGG-CTGAAATAG-TT--T-AGAAG-GAAATTGA-TGTAATTAT-------TATGTTGC---CTACGACAAAC---ATA------A---TA-----TG--T-TTATAC-T-ACAT-TCT-AATTCTAAACACT--TTTTTAT--TCTTAAT-ATTT--AGAAAACTTAAGGAT--AA-GTG-AT-TCA-CTT-AGTTG-TCAATGGTAATTATTAAAA---T-T-AAA----GTA---A-TAT-TTAAAN-T-TTTAAN-AACCCTTTTT-GAA-TACTTATAGAC-CA--TTGTA-----TGAAAATG-TAC-CAT-GGAG-AAT--GTT--TCAA-TTC-TA-T---T-T--A-A---T---CTTTTTTCA-AGGAAAA--AAA---GAAAATGAAAAT--GTAATGACAGT--AAAGTATAACA--TG--CGCATCT-TAGTACTTCAAAGT-AT-GTGTATN-TATATC--------------------GTAAATAGCATCCA--------ATATTGCA----TA-----AA----T---GTATG-TTGTAT----ATATGTATAAA-TAC-AACTGATCCTAA--AATTGATTTAAA-TGATGACTGTAAAGTCATCAATTTG-TG-TGT-TA-TATGTG-A-AAAAATGCACG--AAAAACAC-ATTT--TTATG-ATTTGTG-GGG-GTTAT-TA-CGTTGGC-CAAT------GGTAA-CCGTT--ACC-CAAA-TTTCAGTACATGAT--TA-TAATC-TTTCGACAT-T-TTTC--CTTTCAGAATA-TA-T-ATGGGTT-ACATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTT-TATT-TGAGAANTTTT-G-TC--AT-TAA--GTTTT--CAAGG-AAAACTTGAAATTTTTCC----GTAGTTAAAGGGTTAA
Reference ( gi|2 ) : GTCAGA--ATTTGAAA---A-----TA-----ATTTA-TA-TAT-T-GTGACTTTTTCCCCTGTGACT-TCCTAT-GCGTGA---TTT---TCCCTTTGAA-CTATCCTGGCCTACATCCTAAG--AA-ATTACA-TCAATTTTACTTGAACCTGTAT-ACATAT-TGCA--CA-TAGTT-T-------ATT--------G--A--------CA-GTTTT----CCT---TTTCAATGGGAA--GAAA-------AGG-TTGAAATTG-TT--T-AGAAG-GAAATTGA-TGTAATTATTAACTAGTATGTTGC---CCACGACAAAC---AT-------A---TA-----TG--T-TTATAC-T-AGAT-TCT-AATTATAAGCAC---TTTTTAT--TCATAAT-ATTT--AGAAAAATTAAGGGT--AATGTG-AT-TCA-TTTAAGTTG-CCAATGGTAATTAATAAAA---T-T-AAG----GTACTGAGTAT-TTAAAA-T-TTTAAAAAACCCCTTTT-G-A-TACTTGTAGACTCAATTTGTA-----TGAAAATT-TAC-C-T-GGAG-AAT--GTT--TCAAGTCCCTA-T---T-T--A-A---T---TTTATTTCA-AGGAAAA--AAA---GAAAATAAAAAT--G-AATGACAAT--AAATTATAATA--T---CGCA-CT-TAGTACTTCAAAGT-AT-GTGTATC-TATAT---------------------ATATATAGCGTCCA--------AAATTG-A----TA-----AA----T---GTATG-T-GTAT----ATATGCATAAAATAC-AACTGATCCTAA--AATT-ATTTGAA-TGATGACTGTAAAGTCATCAATTTG-TG-TGT-TA-TATGTG-A-AAAAATGCG-A--AAAAACAC-ATTT--TTATG-ATTTGTG-GGG-GTTAT-TA-CGTTGGC-CAAT------GGTAA-CCGTT--ACCGCAAAATTTCAGTACATTAT--TA-TAATCCTTTCGACAAAT-TTTC--CTTTTAGAATA-TA-T-ATGGGTT-ACATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTT-TATT-TGAAAAATTTT-G-TC--AT-TAA--GGTTT--CAAGG-AAAACTTGAAAATTTTTC----GTAGTTAAAGGATTAA
gi|1 : GTCAGA--ATATGAAA---AACATGCA-----AGTTAATAGTAT-T-GTGACTTTTTTCCCTGAGACT-TCCTAT-GCGTGA---CTTTTGTTCCTTTGAA-CTTTCTT--TCT-CATCCGAAG--AACATTAGA-TCA---TTACTGAAACCTGTAT-ACATATCTGC---CA-TAGTT-T-------ATTAAATATTGG--A--------CA-GTTTTTCCCCCT---TTTCATGGGGAA--GAAA-------AGG-CTGAAA-TG-TT--T-AGAAG-G-AATTGATTGCAATTAT-------TATGTTGC---CT-CGACAAAC---AT-------AC--CA-----TGGTT-TTATAC-TGACAT-TCT-AATTCTAAGCACT--TTTTTAT--TT-TATTCATTT--AG-AAACTTAAGGAT--AAAGTG-AT-TCA-CTT-AGTTG-TC-ATGGTAATT-ATAAA------T-AAA----GT------TCT-TCAAAC-T-TTTTATAAACCTTTTTT-GAA-TACTT-TAGAC-CA--TTGTA-----TAAAG----TACGC-TAGGAGAAAT--GTT--TCAA---TCTATT---T-T--A-AGTCT---CTTTTTTCA-AG--AAA--AAG---GAAA--GAAAAT--GTAATGACAGT--AAAGTATACCA--TG--CACATCT-TAGTGCTTCAAAGTAATAGTGTATTATATCT---------------------ATCTATATTATACATTATATATATATTGTA----TAATAGCAA----TTCCATAT--T-GCATAAAGATGTGTATAACATAC-AACTGATCCTAA--AATG-ATTT-AA-TGATGATTGTAAAGTCATCAATTTGTTG-TGT-TA-TGTG-G-ACAAAAGCACG----AAAAACAC-ATTTTCTTATGAATTTGTG-GGG-TTTTA-TA-CGTT-GC-C-AT------GGTAA-CCGTT--ACC-CAAATATTCAGTACATTAT--TA-TAA---TTTC----AAT-TTT---TTCTTAGAATA-TA-T-ATGGGTTAACATT----ATAAAAATAT-TACTAGAAAACATG--CTTATTTTT-TATT-TG-GAAATTTT-G-TC--AT-TAG--TTTTT--CAAGA-AAA
gi|6 : aaatgtacaatttttttagtggacattctttcgctatgtactGTCAGA--ATTTGAAATACA-----TGC----ATTTA--A-TATAT-GTA--------------GACT-TCCTAT-GCGTGACTTTTT---TCCCTTTGA--CTTTTTT----TACATTCTAAG--AA-ATTAGA-TCA---TTACTGAAACCTGTAT-ACATAT-TGCA--CA-TAGTT-T-------ATT--------A--AATATGGACCA-GTTCC----CTA---TTTC-ATGGGAA--G--A-------AGG-CTGAAATAG-TT--T-TGAAG-AAGATTGA-TGTA--TAT-------TATGTTGC---CT-CGA-AAAC---ATAAC----A---TA-----GG--T-TTATAC-T-ACAT-TCT-AATTCTAAACAC---TTTTTAT--TC-T-AT-TTTT--AGAAAATCTAAGGAT--AA-GTG-AG-TCA-CTT-AGTTG-TCCATGGTAATTATGAAAA---TAT-AA-----GTA------AT-TTAAAAGTGTTTAAA----CCTTTTT-GAA-TACTTATAAAC-CA--TTGTA-----TGAAAATG-TA
gi|4 : gactgtttttacagtgacattctttcctattagtactGTCATA--ATATGAAA---A-----TACATGCATTAA-TA-TAT---GTGACTTTTCCCC--GTGACT-TCTCATAGCGTGACT-TTT---TCCCTTTGA--CTTTCTTTGTCTACATCCTAAGATAA-ACTAGACTCA---TTACTGAAACCTGTATCACATAT-TGCATTCA-TAGTT-TGGTTAAAATG--------G--A--------CA-GTTTC----CCC---TATCATAGGGAA--GAAAAAGACACAGG-CTAGAATAG-TT-----GAAGAGAAGGTGA-TGTAATTAT------GTAT-TT-C---CCTCGACAAACTTAAC-------A---TA-----CG--TGTTATATAT-ACATATCT-AATTGCAAACACTGTTTTTTA---TCTTACT-ATTT--AGAAAACTTAAGGATCAAACGTGCATGTCA-CT--AGTTGTCCATTGGGAATTATGAAAA---A-T-AA-----------AGGATCTTAAAACT-TTTAA------CCTTTTAA-A-TACTTATA-AC-CA--TTGTATAGTCTGAAAATTGTAC-CAA-GGAG-AA----TT--TCA----CATA-TATAT-T--A-A---T---CT--TTTCA-AGAAAAAAGAAA---GTGAATGAGAGTAGG-AA-GACAGA--AGGTTATAACA--TGCGCGCA-CTGTAGT-----GGAGG-GT-GTGCATC-
gi|7 : gtaccatacagtttgactttttacatgccattcttctattagtactTCAAACCATTTAATT---A-----TA-----ATC----A-TAT-TAGTGACTTTTTCCCTT---ACTATCCTAT-GTGTGACT-TTT---TCCCTGCGAAACTTTCTT---CCAC-CCTTAGA--AA-ATTACA-TCA--------T-AAC----AT-ATATTC-TGCA--CACTATTTCT-------ATT--------GGTA--------CAAGTCCC----CCTA--TTTCA-TGGAAAAAGAAA-------AGGTTTGATAGTA-TTTAT-AGAAG---AACTGACTGTAAT---------ATATGTTGCAATGCACA--AAAC---ATAGTAGGAA---TA-----TG--T-ATATAC-C---AT-TCTCAATTATAA-CACT--TTTTTATTATCAAGATGATCT--GATAAAATCCAGGAC--AA-GTA-AA-TAAGTTCGAGTTgtgtaaagtacttaatctaatatcgagtatatattttaatttattgtggagttccaatagtgcctataccgcctattggtttatatagt
gi|3 : tttcgtcgcacccaactccaatggaagagtgctactaataAT-GCAAAT-TGCA--CA-TAATT-T-------ATT--------GG-A--------CA-GTTTT----CCCCTATTTCA-TCGGAA--GAAA--------GG-TTGAAATAG-TT--TTAGGAG-GGA-TTGA-TATAATTATT------T-TGTTGC---C-ACGGTAAAC---AT-------A---TAAAATATG--T-TTAGAC-T-ACAT-TCT-ACTTCTAAACAC---TTTGTAT--TTTTTAT-CCTTTCAGAATA--TA----T--AA---G-AT-TTA-TTTC-GTTG-TCA-TGGTAAATA-TAAAACAAT-T-AAGTAATGTCATGAATTT-TT-----T-TTTAAA------CTTTT-G-AATACTTATAGA-TCA--TTGTG-----TGAAAATG-TAC-C-T-GGAA-AATATGTT--TCAA-TTCTAA-T---T-C--A-A---TCTTTTTTTTTCA-AGGAAAA--AAG---GAAGA---AAAT--GTAATGACAGT--AAAGTAAAATG------CGCA-CT-TTGTACTTCAATGT-AT-GTGTATA-TATATT--------------------GTAAATAACATCCA--------ATATTGCA----TA-----AA----T---ATATG-TTGTAT----ATATGTATAAA-TAC-AATTGATCCTAA--AATTGATTTAAA-TGATGACTGTAAAGTAATCAATTCG-TG-TTT-TA-TATGTG-A-AAAAATGCACG--AAAAACAC-ATTT--TTATC-ATTTGTG-GGG--TTAT-TA-CGTTG-C-CA-T------GGTAA-CCGTT--ACCCCAAA-TTTCATTACATGAT--TA-TAATC--TTCGACAT-T-TTTC--CTTTCAGAATA-TA-T-TTGGGTT-ACATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTT-CATT-TGAAAA--TTT-G-TC--AT-T-A--GTTTT--GAAGG-AAAACTTTAAATTTTCTG----GTAGTTAAAGGGTTAA
gi|14 : tgT-T-------ATT--------GG-A--------CA-GTTTC----CCCCTATTTCA-TGGAAA--GAAA-------AGG-TTGAAGTAGTTT--T-AGAAG-G-AACTGA-TGTAATTAT-------TATGTTGC---AT-TGACAAAC---ATAGA----A---TA-----TG--T-TTATAC-T-ACAT-TCT-AATTATAAG
gi|5 : TATGTCGC---C-ACGGCAAAC---AT-------AAAATA-----TG--T-TTATAC-T-ACAT-TCT-AATTCTATACAC---TTCGTAC--TCTTA-T-ATTT--AGAAAACT--AGG-----------AT-TCG-TTTA-GTTG-CCA-TGGTCATTA-TAAAA---T-TTAAA----GTA------AT-TTAAAC-T-TTTTTTTAACCTTTTTT-A-A-TACTTATAGAC-CA--TTGTA-----TGAAAATA-TAC-CAT-TTA--AAT--GTT--TCGATTT--TA-T---T-TTGA-T---T---TTTTTTTCA-AGGAAAA--AAATTGGAAAAT-----C--T-ATTGACAGTGAAAAGTATAGCA--TG--CGCA-CT-TA-TCCTTCAAATC-AT-GTGTTTG-TGTGTT--------------------GTAAATAACATTCA--------ATACTATA----GA-----AA----T---ATATG-TTGTAT----ATTTGTATAAA-TAT-AAGTGGTCCTAA--TTCT-ATTTAAT-TGATGACATTAAATTCATCAATTTG-TG-TGT-TT-TATGTGGA-AAAAATACACG--AAAAACAC-ATTT--TTATG-ATTTGTG-GGG--TTAT-GT-TGTTGGC---AT------GGTAA-CCGAT--ACCCCATA-TTTCAGTACATGAT--TA-ACATC--TTCAACATGT-TTCC--CTTTTA------TA-T-ATAGGTT-ACATT----ATAAGAATAT-TACTAGAAA--ATG-CCGTATTTTT-CATT-TT--AAATTTT-G-TC--AT-T-A--GTTTT--GAAGG-AAAACTTG---ATTTTTTTTAAGTAGTTAATGGGTTAA
gi|9 : aatACTTGTAC----TGCAAATG-TAC-C-A-GGAG-AAT--GTTCATCAAATC--TA-T---TCT--ATA---T---CGTTTTTCATAGGAAAA--AAA-----AAAGGAAAAT--GTAATGACAGT--AAGT-ATAACAAGC---CGCTTCT-TAGTACTTCAAAGT-AT-GTGTATC-TATATCTAATATATTTTATATATACTATGTATAGCATCCA--------TATTTGCA----TA-----A---------GTATGCT-CTAT----A-ATG-ATAAA-TAC-AACTGACC--AA--AATTGATT--AA-TGATGA-TGTAG-GTCATCA-TTTG--G-TGT--A-TATGTG-A-CAAAATGC-----ACGAACAC-A--T--TTATG-A-TTGTGTTGG-GTTAT-TA-CGT--GC-C-AT------GGTAA--CGAT--ACCa
gi|8 : agTAAATAGCATC-A--------ATATTGCA----TA-----AA----T---GTATG-T-GTGT----ATATGTAT-AAATACAAACTGATCCTAA--AATTGATTTAAA--GATGATTG--AAGTCATCATTTTG-TGTTGTATATTATGTG-A-CAACATGCA-C--GAAAACACAATTT--TTATG-ATTTGT--GGG-GTTAT-TA-C-TTGCC-TG--------GGTAA-CCGTT--ACC-C-AAATTTCAGTA-ATGAT--TA-TAATCTT-----CAAAT-TTTT--CCTTCAGAATA-TA-T-ATGGGTT-ACA-T----ATATAAATAT-TACTAGAAA--ATGACCTTA-TTTT-TATT-TG---ATTTTT-G-TC--AT-T-A--GTTTT--CAAGG-AAAACTTG-CAGTTTTCCG---GTAGTTAAAGGGTTAA
gi|13 : gCCA--------AATTTG-AATTTTA-----AAATATT---GTATG-TTGTAT----ATATGTATAAA-TAC-AACTGATCCTAA--AATTTATTTAAA-TGATGACTGTAAAGTCATCAATTTG-TG-TGT-TA-TATGTG-A-AATAATGCACG--AAAAACAC-acgtaataaa
gi|10 : GGTCCTAATGAATT-ATTAGAACTG--GAGTGTAAAGTCATCAGTT-G-TG-TGTCTA-TATGT--A-CAAAATCCT-ACGAACAACAC-CATT--TTATG-ATTTGTG-GG---TTAT-TAGCGTTG-C-CAAT------GGTAA-CCGTTTCGCCGCAAA-TTTCAGTACAT-AT---A-TA---CTCTC-ACA--TGTTTC--CTTTCA-AATACTAGT-ATGG-TT-ACATT----ATAAAAATAT-TACTAATAA--ATG-CCTTATTTTTATTTT-TG--AAATTTT-G-TCAAAT-T-A--GTTTT--CCAGGAAAAACTTGAAATTTTCTG----GTA-TTAAAGGGTTAA
gi|11 : ctgGCA-A--AATTACATGATTG--TGATG-ATTT-TG-GGGAGGTATATA--ATTAGCGTAATCCATTAGGTAAACCATTT-AC----AAATTTCAGTACATGAT--TG-TAATC--TTCGACAT-T-TTTC--CTTTCAGAATA-TA-T-ATGGGTT-ACATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTT-TATT-TGAAATGTTCTGG-TA--GT-TAAAGGGTTca
gi|12 : ACATGATGGTAGTAATC--TTCAACA--T-TTTCGGCTTTCCGAATA-TA-TCATGGGTT-ACATTTATCACAAGAATATATACTAGAAA--ATG-CCTTATTTTT-TATTGTGAGCATTGTT-GTTC--ATGTAG--TGTTTTGTAAGG--ACACTTGAAATTTTTCT----GTAGTTAAAGGGaaatctcgcacacaaagaatt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): TTTCTAGTTGTTAAATAGCAGTGGTAGCCAAAACAGTGATATTAAGACTTATCCCAA
Unaligned ( gi|16 ): TTTTACAGTGACTTCTTTCCTAATTAGTACTGTCAGAATTTGAA
Alignments
lowQualScore : 111 333333333333 111 222 333333 11 111 2222222222222222222222 1111 222 1111111 111 1 1111111 22 33333333333333 1 11 22 1 22222222 555555555555 22222 11 1111 2222222222 111 3333333333333333333 11 333333333333 22 111 1 55555555555555555555555 11 1 22222222222 11 1 1111 222 22222
lowQualScore : 1 777 3 2 222222222222 8 666 0 3 444 8 8 8 8 999 555555 99 8 8 444 0 6 6 99 6 5 8888888888888888888888 5 5 2222 777 5 5 8888 8888888 5 5 1 555 5 4 5 5 1 5 6666666 66 5 5 66666666666666 66 66 5 777 5 5 2 77 2 0 3 0 5 5 77 77 5 6666 5 99 666 6 6 22 5 99 3 1 22222222 88 1 6 222222222222 1 5 77 00000 5 99 1 5555 99 3 99 6 6 0000000000 3 111 6 1 99 5555555555555555555 99 88 6 444444444444 6 7 3 888 44 6 99 3 2 111 77 0 22222222222222222222222 1 77 5 6 00 22 0 5 5 5 66 33 0 55 3 0 5 5 0 5 5 3 5 66 4 55 66 5 77 77 5 5 77 55555555555 5 11 5 0 5 5 5 66 5 99999 4 77 5 66 44 5 5 5 5 0000 5 66 5 0 5 88888 5 77 5 000 5 5 3 00000
lowQualScore : . ... . . ............ . ... . . ... . . . . ... ...... .. . . ... . . . .. . . ...................... . . .... ... . . .... ....... . . . ... . . . . . . ....... .. . . .............. .. .. . ... . . . .. . . . . . . .. .. . .... . .. ... . . .. . .. . . ........ .. . . ............ . . .. ..... . .. . .... .. . .. . . .......... . ... . . .. ................... .. .. . ............ . . . ... .. . .. . . ... .. . ....................... . .. . . .. .. . . . . .. .. . .. . . . . . . . . . .. . .. .. . .. .. . . .. ........... . .. . . . . . .. . ..... . .. . .. .. . . . . .... . .. . . . ..... . .. . ... . . . .....
lowQualScore : 0 555 2 5 000000000000 0 888 8 2 222 0 0 0 0 666 222222 00 0 0 000 8 7 7 22 7 7 1111111111111111111111 7 7 1111 999 7 7 1111 6666666 7 7 7 111 7 1 7 7 4 0 2222222 88 0 0 88888888888888 99 99 0 111 0 0 5 99 0 1 0 1 1 7 99 99 7 7777 7 33 666 7 7 22 8 22 5 7 22222222 88 0 7 000000000000 7 7 99 00000 7 00 0 0000 22 7 22 7 7 7777777777 2 777 7 0 22 2222222222222222222 22 33 7 333333333333 7 3 7 555 77 7 22 2 5 777 77 5 44444444444444444444444 7 99 7 6 33 11 1 7 7 7 99 88 4 44 4 1 0 0 0 0 0 0 0 11 4 44 99 0 55 55 0 0 00 00000000000 0 99 0 0 7 7 7 99 0 88888 2 55 0 99 66 0 0 0 0 6666 0 99 0 9 0 99999 7 99 7 000 7 7 2 22222
consensus : GTCAGAATNTGAAA---ATACAT-----TTA-T--A-TAT-T-GTGACTTTTTCCCCTG-GACT-TCCTAT-GCGTGACTTTT-T-CCCTTTG-AACTTTCTT-GTCTACATCCTAAGA-AA-ATTAGA-TCA---TTACTGAAACCTGTAT-ACATAT-TGCA--CA-TAGTT-T------AT------T-------GG-A-CAGTTT----CCCC---TTTCA-T-GG--G-AAGAAA-------AGG-CTGA-AATAGTT-T-AGAAG-GAAATTGA-T-GTAATTAT-TA-------TGTTGCCTACG-AC-AAACAT------A----A--TAT--G--T-TTATAC-T-ACAT-TCT-AATTNTAAACAC--TTTTTTATTCTTAAT-AT--TT--AGA-AAACTTAAGGAT-AA--GTG-AT-TCACTTA-GTTGTCAA-TGGTAATTATGAAA--ATTAAAGTA----AT-TT-NAAACT-TTT----AA--A-CCCTTTTTGAATACTTATAGAC-CA--TTGTA-----TGAAAA-TGTACCATGGAGAA-T--GTT--TCAANTC--TA-T-T-T--A-A---TCTTTTTT---CA-AGGAAAA--AAA--GAAAATG----------AA--AATGTA--ATG-ACA-----GT-----AAAG-TATAACATG-CGCAT-CT-TAG-TACTTCAAAGTATG---TGTAT-NTATATTGTA-A---------------------ATAGCA--TCCAATA-TTGCATAAATGTATGTTGTATATATGTAT-AA-ATACAA-CTGATCCTAA--AATTG-ATTTAAA-TGATGACTGTAAAGTCATCAATTTGT-GT-GT-TAT-ATGTG-ANAAAATGC-ACGAAAA--ACAC-A-TTTT--TATGA-TTTGTG-GGG-GTTAT-TA-CGTTGGC-CAAT------GGTAA-CCGTT--A-CC-C-AA-AT-TTCAGTACATGAT--TA-TAAT-CTTTCGAC-AT-TTTTC--CTTTCAGAATA-TA-T-ATGGGTTA-CATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTTATT-TGAGAAATTTTGT-C--AT-TAA-GTTTT-CAAGG-AAAACTTGAAATTTTCCG---GTAGTTAAAGGGTTAA
Reference ( family-4184 ) : GTCAGAATNTGAAA---ATACAT-----TTA-T--A-TAT-T-GTGACTTTTTCCCCTG-GACT-TCCTAT-GCGTGACTTTT-T-CCCTTTG-AACTTTCTT--TCTACATCCTAAG--AA-ATTAGA-TCA---TTACTGAAACCTGTAT-ACATAT-TGCA--CA-TAGTT-T------AT------T-------GG-A-CAGTTT----CCCC---TTTCA-T-GG--G-AAGAAA-------AGG-CTGA-AATAGTT-T-AGAAG-GAAATTGA-T-GTAATTAT-TA-------TGTTGCCTACG-AC-AAACAT------A----A--TAT--G--T-TTATAC-T-ACAT-TCT-AATTCTAAACAC--TTTTTTATTCTTAAT-AT--TT--AGA-AAACTTAAGGAT-AA--GTG-AT-TCACTTA-GTTGTCAA-TGGTAATTATTAAA--ATTAAAGTA----ATATT-TAAANT-TTT----AANAA-CCCTTTTTGAATACTTATAGAC-CA--TTGTA-----TGAAAA-TGTACCATGGAGAA-T--GTT--TCAATTC--TA-T-T-T--A-A---TCTTTTTT---CA-AGGAAAA--AAA--GAAAATG----------AA--AATGTA--ATG-ACA-----GT-----AAAG-TATAACATG-CGCAT-CT-TAG-TACTTCAAAGTATG---TGTAT-NTATATCGTA-A---------------------ATAGCA--TCCAATA-TTGCATAAATGTATGTTGTATATATGTAT-AA-ATACAA-CTGATCCTAA--AATTG-ATTTAAA-TGATGACTGTAAAGTCATCAATTTGT-GT-GT-TAT-ATGTG-AAAAAATGC-ACGAAAA--ACAC-A-TTTT--TATGA-TTTGTG-GGG-GTTAT-TA-CGTTGGC-CAAT------GGTAA-CCGTT--A-CC-C-AA-AT-TTCAGTACATGAT--TA-TAAT-CTTTCGAC-AT-TTTTC--CTTTCAGAATA-TA-T-ATGGGTTA-CATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTTATT-TGAGAANTTTTGT-C--AT-TAA-GTTTT-CAAGG-AAAACTTGAAATTTTTCC---GTAGTTAAAGGGTTAA
gi|1 : GTCAGAATATGAAA---A-ACATGCAAGTTAAT--AGTAT-T-GTGACTTTTTTCCCTGAGACT-TCCTAT-GCGTGACTTTTGT-TCCTTTG-AACTTTCTT--TCT-CATCCGAAG--AACATTAGA-TCA---TTACTGAAACCTGTAT-ACATATCTGC---CA-TAGTT-T------AT------TAAATATTGG-A-CAGTTTTTCCCCCT---TTTCA-T-GG--GGAAGAAA-------AGG-CTGA-AAT-GTT-T-AGAAG-GAA-TTGA-TTGCAATTAT-TA-------TGTTGCCT-CG-AC-AAACAT------A----C--CAT--GGTT-TTATAC-TGACAT-TCT-AATTCTAAGCAC--TTTTTTATT-TTATTCAT--TT--AGA-AA-CTTAAGGAT-AAA-GTG-AT-TCACTTA-GTTGTCA--TGGTAATTAT--AA--AT-AAAGT------TCTT-CAAACT-TTT----TATAAACCTTTTTTGAATACTT-TAGAC-CA--TTGTA-----T-AAAG-TACGCTA-GGAGAAAT--GTT--TCAAT-C--TA-T-T-TT-A-AGTCTCTTTTTT---CA-AGAAAAAGGAAA--GAAAATGTAATGACAGTAA--AGTATACCATGCACATCTTAGTGCTTCAAAG-TA--ATA-G-TGTAT-TA-TATCTATCT-ATATTATACATTATAT-ATATATTGTATA---------------------ATAGCAATTCCA-TA-TTGCATAAA--------G---ATGTGTAT-AACATACAA-CTGATCCTAA--AAT-G-ATTTAA--TGATGATTGTAAAGTCATCAATTTGTTGT-GT-TAT-GTG-G-ACAAAA-GC-ACGAAAA--ACAC-A-TTTTCTTATGAATTTGTG-GGG-TTTTA-TA-CGTTG-C-CA-T------GGTAA-CCGTT--A-CC-C-AA-ATATTCAGTACATTAT--TA-TAAT---TTCAA---T-TTTTT--CTT--AGAATA-TA-T-ATGGGTTAACATT----ATAAAAATAT-TACTAGAAAACATG--CTTATTTTTTATT-TG-GAAATTTTGT-C--AT-TAG-TTTTT-CAAGA-AAA
gi|10 : aaatgtacaatttttttagtggacattctttcgctatgtactGGTCCTAATGAATT--ATTAGAACTG--GAGTGTAAAGTCATCAGTT-GT-GT-GTCTAT-ATGT--ACAAAATCCTACGAACA--ACAC-C-ATTT--TATGA-TTTGTG-GG---TTAT-TAGCGTTG-C-CAAT------GGTAA-CCGTTTCG-CCGC-AA-AT-TTCAGTACATA----TA-TA---CTCTC-AC-AT-GTTTC--CTTTCA-AATACTAGT-ATGG-TTA-CATT----ATAAAAATAT-TACTAATAA--ATG-CCTTA-TTTTTATT-TTTGAAATTTTGT-CAAAT-T-A-GTTTT-CCAGGAAAAACTTGAAATTTTCTG---GTA-TTAAAGGGTTAA
gi|11 : ctgAAAATTACATGA-TTGT--GATGA-TTT-TG-GGGAGGTATATA--ATTAGCGTAATCCATTAGGTAAACCATTT-A-C----AA-AT-TTCAGTACATGAT--TG-TAAT-CTT-CGAC-AT-TTTTC--CTTTCAGAATA-TA-T-ATGGGTTA-CATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTTATT-TGAAATGTTCTGca
gi|12 : gcACATGATGGTAGTAAT-CTT-CAAC-AT-TTT-CGGCTTTCCGAATA-TA-TCATGGGTTA-CATTTATCACAAGAATATATACTAGAAA--ATG-CCTTATTTTTTATTGTGAGCATTGTTGTTC--ATGTAGTGTTTTGTAAGG-ACA-CTTGAAATTTTTCT---GTAGTTAAAGGGTgtagttaaagggttaaatctcgcacacaaagaatt
gi|13 : TGTATGTTGTATATATGTAT-AA-ATACAA-CTGATCCTAA--AATTT-ATTTAAA-TGATGACTGTAAAGTCATCAATTTGT-GT-GT-TAT-ATGTG-AAATAATGC-ACGAAAA--ACAC-aacagtggtagtcaaaagagctgatataaaacgactcatcgccaaa
gi|14 : ccaaatttgaattttaaaatatT-T------AT------T-------GG-A-CAGTTT----CCCCCTATTTCA-T-GG--A-AAGAAA-------AGG-TTGA-AGTAGTT-TTAGAAG-GAA-CTGA-T-GTAATTAT-TA-------TGTTGCAT-TG-AC-AAACATAG----A----A--TAT--G--T-TTATAC-T-ACAT-TCT-AATTATAA
gi|2 : GTCAGAATTTGAAA---ATA-AT-----TTA-T--A-TAT-T-GTGACTTTTTCCCCTGTGACT-TCCTAT-GCGTGA--TTT-T-CCCTTTG-AACTATCCTGGCCTACATCCTAAG--AA-ATTACA-TCAATTTTACTTGAACCTGTAT-ACATAT-TGCA--CA-TAGTT-T------AT------T-------G--A-CAGTTT----TCCT---TTTCAAT-GG--G-AAGAAA-------AGG-TTGA-AATTGTT-T-AGAAG-GAAATTGA-T-GTAATTAT-TAACTAGTATGTTGCCCACG-AC-AAACAT------A-------TAT--G--T-TTATAC-T-AGAT-TCT-AATTATAAGCAC--TTTTT-ATTCATAAT-AT--TT--AGA-AAAATTAAGGGT-AAT-GTG-AT-TCATTTAAGTTGCCAA-TGGTAATTAATAAA--ATTAAGGTACTGAGTATT-TAAAAT-TTT----AAAAAACCCCTTTTGA-TACTTGTAGACTCAATTTGTA-----TGAAAA-TTTACC-TGGAGAA-T--GTT--TCAAGTCCCTA-T-T-T--A-A---TTTTATTT---CA-AGGAAAA--AAA--GAAAATA----------AA--AATG-A--ATG-ACA-----AT-----AAAT-TATAATAT--CGCA--CT-TAG-TACTTCAAAGTATG---TGTAT-CTATAT-ATA-T---------------------ATAGCG--TCCAAAA-TTG-ATAAATGTATG-TGTATATATGCATAAA-ATACAA-CTGATCCTAA--AATT--ATTTGAA-TGATGACTGTAAAGTCATCAATTTGT-GT-GT-TAT-ATGTG-AAAAAATGC-G-AAAAA--ACAC-A-TTTT--TATGA-TTTGTG-GGG-GTTAT-TA-CGTTGGC-CAAT------GGTAA-CCGTT--A-CCGCAAA-AT-TTCAGTACATTAT--TA-TAATCCTTTCGACAAA-TTTTC--CTTTTAGAATA-TA-T-ATGGGTTA-CATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTTATT-TGAAAAATTTTGT-C--AT-TAA-GGTTT-CAAGG-AAAACTTGAAAATTTTTC---GTAGTTAAAGGATTAAg
gi|3 : AT-GCAAAT-TGCA--CA-TAATT-T------AT------T-------GG-A-CAGTTT----TCCCCTATTTCA-T-CG--G-AAGAAA--------GG-TTGA-AATAGTT-TTAGGAG-GGA-TTGA-T-ATAATTAT-TT-------TGTTGCC-ACG-GT-AAACAT------ATAAAA--TAT--G--T-TTAGAC-T-ACAT-TCT-ACTTCTAAACAC--TTTGT-ATTTTTTAT-CC--TTTCAGA-ATAT------AT-AA--G---AT-TTATTTC-GTTGTCA--TGGTAAATATAAAACAATTAA-GTA----ATGTCATGAATT-TTTTTTTAA--A-C---TTTTGAATACTTATAGAT-CA--TTGTG-----TGAAAA-TGTACC-TGGAAAA-TATGTT--TCAATTC--TAAT-T-C--A-A---TCTTTTTTTTTCA-AGGAAAA--AAG--GAA---G----------AA--AATGTA--ATG-ACA-----GT-----AAAG-TA-AA-ATG-CGCA--CT-TTG-TACTTCAATGTATG---TGTAT-ATATATTGTA-A---------------------ATAACA--TCCAATA-TTGCATAAATATATGTTGTATATATGTAT-AA-ATACAA-TTGATCCTAA--AATTG-ATTTAAA-TGATGACTGTAAAGTAATCAATTCGT-GT-TT-TAT-ATGTG-AAAAAATGC-ACGAAAA--ACAC-A-TTTT--TATCA-TTTGT--GGG-GTTAT-TA-CGTT-GC-C-AT------GGTAA-CCGTT--ACCC-C-AA-AT-TTCATTACATGAT--TA-TAAT-C-TTCGAC-AT-TTTTC--CTTTCAGAATA-TA-T-TTGGGTTA-CATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTCATT-TGAAAA--TTTGT-C--AT-T-A-GTTTT-GAAGG-AAAACTTTAAATTTTCTG---GTAGTTAAAGGGTTAA
gi|4 : tgGTCATAATATGAAA---ATACAT-----GCA-TTAA-TATAT-GTGACTTTTCCCCGTG--ACT-TCTCATAGCGTGACTTTT-T-CCCTTTG--ACTTTCTTTGTCTACATCCTAAGATAA-ACTAGACTCA---TTACTGAAACCTGTATCACATAT-TGCATTCA-TAGTT-TGGTTAAAA------T-------GG-A-CAGTTT----CCCC---TATCA-TAGG--G-AAGAAAAAGACACAGG-CTAG-AATAGTT----GAAGAGAAGGTGA-T-GTAATTATGTA-------T-TTCCCT-CG-AC-AAACTT------AAC--A--TAC--G--TGTTATATAT-ACATATCT-AATTGCAAACACTGTTTTTTA-TCTTACT-AT--TT--AGA-AAACTTAAGGATCAAACGTGCATGTCAC-TA-GTTGTCCATTGGGAATTATGAAA--AATAAAG-G----ATCTT-AAAACT-TTT----AA------CCTTTTAAATACTTATA-AC-CA--TTGTATAGTCTGAAAATTGTACCAAGGAGAA-----TT--TCACATA--TA-TAT-T--A-A---TC--TTTT---CA-AG--AAA--AAA--GAAAGTG----------AATGAGAGTAGGAAG-ACA-----G------AAGGTTATAACATG-CGCGCACTGTAG-T-----GGAGGGTG---TGCATCGTGTAAAGTA-C---------------------TTA--A--TCTAATA-TCG----AGTATATATTTTA
gi|5 : gtaccatacagtttgactttttacatgccattcttctattagtactAT-TA-------TGTCGCC-ACG-GC-AAACAT------A----AAATAT--G--T-TTATAC-T-ACAT-TCT-AATTCTATACAC--TTCGT-ACTCTTA-T-AT--TT--AGA-AAACT---------A--G-G-AT-TCGTTTA-GTTGCCA--TGGTCATTATAAAA--TTTAAAGTA----AT--T-TAAACT-TTT----TTTTA-ACCTTTTTTAATACTTATAGAC-CA--TTGTA-----TGAAAA-TATACCATTTA-AA-T--GTT--TCGATTT--TA-T-T-TTGA-T---TTTTTTTT---CA-AGGAAAA--AAATTG-----G----------AA--AATCTA--TTG-ACA-----GTGA---AAAG-TATAGCATG-CGCA--CT-TA--TCCTTCAAATCATG---TGTTT-GTGTGTTGTA-A---------------------ATAACA--TTCAATA-CTATAGAAATATATGTTGTATATTTGTAT-AA-ATATAA-GTGGTCCTAA----TTCTATTTAAT-TGATGACATTAAATTCATCAATTTGT-GT-GT-TTT-ATGTGGAAAAAATAC-ACGAAAA--ACAC-A-TTTT--TATGA-TTTGT--GGG-GTTAT-GT-TGTTGGC---AT------GGTAA-CCGAT--A-CC-C-CATAT-TTCAGTACATGAT--TA-ACAT-C-TTCAAC-ATGTTTCC--CTTT-----TA-TA-T-ATAGGTTA-CATT----ATAAGAATAT-TACTAGAAA--ATG-CCGTATTTTTCATT-T--TAAATTTTGT-C--AT-T-A-GTTTT-GAAGG-AAAACTTG--ATTTTTTTTAAGTAGTTAATGGGTTAAatttattgtggagttccaatagtgcctataccgcctattggtttatatagt
gi|6 : aGTCAGAATTTGAAATACATGCAT-----TTA----A-TAT---ATG-----------TA-GACT-TCCTAT-GCGTGACTTTT-TTCCCTTTG-A-CTTTTTT--T--ACATTCTAAG--AA-ATTAGA-TCA---TTACTGAAACCTGTAT-ACATAT-TGCA--CA-TAGTT-T------ATTAAATAT-------GG-ACCAGTTC----CCTA---TTTCA-T-GG--G-AAG--A-------AGG-CTGA-AATAGTT-T-TGAAG-AAGATTGA-T-GTA--TAT-TA-------TGTTGCCT-CG-A--AAACAT------A----A--CATAGG--T-TTATAC-T-ACAT-TCT-AATTCTAAACAC---TTTTTATTCT--AT-TT--TT--AGA-AAATCTAAGGAT-AA--GTG-AG-TCACTTA-GTTGTCCA-TGGTAATTATGAAA--ATATAAGTA----AT-TT-AAAAGTGTTT----AAA----CCTTTTTGAATACTTATAAAC-CA--TTGTA-----TGAAAA-TGTAa
gi|7 : gactgtttttacagtgacattctttcctattagtact--A-TAT-TAGTGACTTTTTCCCTT---ACTATCCTAT-GTGTGACTTTT-T-CCCTGCGAAACTTTCTT--C---CACCCTTAGA-AA-ATTACA-TCA---T------AAC----AT-ATATTC-TGCA--CACTATTTCT------AT------T-------GGTA-CAAGTC----CCCCTA-TTTCA-T-GGAAA-AAGAAA-------AGGTTTGATAGTATTTAT-AGAAG---AACTGACT-GTAA-TA--TA-------TGTTGCA-ATGCACAAAACATAGTAGGA----A--TAT--G--T-ATATAC----CAT-TCTCAATTAT-AACAC--TTTTTTATTATCAAG-ATGATC--TGATAAAATCCAGGAC-AA--GTA-A
gi|8 : tttcgtcgcacccaactccaatggaagagtgctactaatatcaaaccatttaattataatcGTA-A---------------------ATAGCA--TC-AATA-TTGCATAAATGTATGT-GTGTATATGTAT-AA-ATACAAACTGATCCTAA--AATTG-ATTTAAA--GATGATTG--AAGTCATCATTTTGT-GTTGTATATTATGTG-ACAACATGC-ACGAAAA---CAC-AATTTT--TATGA-TTTGTG-GGG--TTAT-TA-C-TTGCC-TG--------GGTAA-CCGTT--A-CC-C-AA-AT-TTCAGTA-ATGAT--TA-TAAT-CTT-CAA--AT-TTTTC--CTT-CAGAATA-TA-T-ATGGGTTA-CAT-----ATATAAATAT-TACTAGAAA--ATGACCTTATTTTT-ATT-TGA---TTTTTGT-C--AT-TA--GTTTT-CAAGG-AAAACTTGCAGTTTTCCG---GTAGTTAAAGGGTTAAataagttcgagtt
gi|9 : AGAC-----TTGTAC----TGCAAA-TGTACCA-GGAGAA-T--GTTCATCAAATC--TA-T-TCT--ATA---TCGTTTTT---CATAGGAAAA--AAA----AAAGG----------AA--AATGTA--ATG-ACA-----GT------AAG-TATAACAAGCCGCTT-CT-TAG-TACTTCAAAGTATG---TGTAT-CTATATC-TA-ATATATTTTATATATACTATGTATAGCA--TCC-ATATTTGCATAA--GTATGCTCTATA-ATG-AT-AA-ATACAA-CTGA--CCAA--AATTG-ATT--AA-TGATGA-TGT-AGGTCATC-ATTTG--GT-G--TAT-ATGTG-ACAAAATGC-ACG---A--ACAC-A---TT--TATGA--TTGTGTTGG-GTTAT-TA-CGT--GC-C-AT------GGTAA--CGAT--A-CC-acgtaataaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTTCTAGTTGTTAAATAGCAGTGGTAGCCAAAACAGTGATATTAAGACTTATCCCAA
Unaligned ( gi|16 ): TTTTACAGTGACTTCTTTCCTAATTAGTACTGTCAGAATTTGAA
Alignments
lowQualScore : 111 333333333333 111 222 222222 1 111 2222222222222222222222 1111 222 1111111 111 1 1111111 22 33333333333333 1 11 22 111111 333333333333333 22222 11 1111 2222222222 111 3333333333333333333 11 333333333333 22 111 55555555555555555555555 11 1 22222222222 11 1 1111 222 11
lowQualScore : 1 777 3 2 222222222222 8 666 0 3 444 8 8 8 8 999 8 8 000000 8 0 8 444 0 6 6 99 6 5 8888888888888888888888 5 5 2222 777 5 5 8888 8888888 5 5 1 555 5 4 5 5 1 5 6666666 66 5 5 66666666666666 66 66 5 777 5 5 1 77 2 0 3 0 5 5 77 77 5 6666 5 99 666 6 6 22 2 99 1 999999 6 7 99 5 6 999999999999999 1 1 5 77 00000 5 99 1 5555 99 7 99 6 6 0000000000 3 111 6 1 99 5555555555555555555 99 88 6 444444444444 6 7 3 888 44 6 99 3 2 111 77 3 22222222222222222222222 1 77 5 6 00 22 0 5 5 5 66 33 0 55 3 0 5 5 0 5 5 1 5 66 4 55 66 5 77 77 5 5 77 55555555555 5 11 5 0 5 5 5 66 5 99999 4 77 5 66 44 5 5 5 5 0000 5 66 5 0 5 88888 5 77 5 000 5 5 6 11
lowQualScore : . ... . . ............ . ... . . ... . . . . ... . . ...... . . . ... . . . .. . . ...................... . . .... ... . . .... ....... . . . ... . . . . . . ....... .. . . .............. .. .. . ... . . . .. . . . . . . .. .. . .... . .. ... . . .. . .. . ...... . . .. . . ............... . . . .. ..... . .. . .... .. . .. . . .......... . ... . . .. ................... .. .. . ............ . . . ... .. . .. . . ... .. . ....................... . .. . . .. .. . . . . .. .. . .. . . . . . . . . . .. . .. .. . .. .. . . .. ........... . .. . . . . . .. . ..... . .. . .. .. . . . . .... . .. . . . ..... . .. . ... . . . ..
lowQualScore : 0 555 2 5 000000000000 0 888 8 2 222 0 0 0 0 666 0 0 888888 0 6 0 000 8 7 7 22 7 7 1111111111111111111111 7 7 1111 999 7 7 1111 6666666 7 7 7 111 7 1 7 7 4 0 2222222 88 0 0 88888888888888 99 99 0 111 0 0 0 99 0 1 0 1 1 7 99 99 7 7777 7 33 666 7 7 22 2 22 7 222222 7 5 22 2 7 777777777777777 0 7 7 99 00000 7 00 0 0000 22 5 22 7 7 7777777777 2 777 7 0 22 2222222222222222222 22 33 7 333333333333 7 3 7 555 77 7 22 2 5 777 77 5 44444444444444444444444 7 99 7 6 33 11 1 7 7 7 99 88 4 44 4 1 0 0 0 0 0 0 0 11 4 44 99 0 55 55 0 0 00 00000000000 0 99 0 0 7 7 7 99 0 88888 2 55 0 99 66 0 0 0 0 6666 0 99 0 9 0 22222 0 99 7 000 7 7 7 88
consensus : GTCAGAATNTGAAA---ATACAT-----TTA-T--A-TAT-T-GTGACTTTTTCCCCTG-GACT-TCCTAT-GCGTGACTTTT-T-CCCTTTG-AACT-TTC-TTGTCTACATCCTAAGA-AAATTAGA-TCA---TTACTGAAACCTGTAT-ACATAT-TGCA--CA-TAGTT-T------AT------T-------GG-A-CAGTTT----CCCC---TTTCA-T-GG--G-AAGAAA-------AGG-CTGA-AATAGTT-T-AGAAG-GAAATTGA-T-GTAATTAT-TA-------TGTTGCCTACG-AC-AAACAT------A----A--TAT--G--T-TTATAC-T-ACAT-TCT-AATTNTAAACAC--TTTTTTATTCTTAAT-AT--TT--AGA-AAACTTAAGGAT-AA--GTG-AT-TCACTTA-GTTGTCAA-TGGTAATTATAAAA--ATTAAAGTA------AT-TTAA--AACT-TTT----A---AA---CCCTTTTTGAATACTTATAGAC-CA--TTGTA-----TGAAAA-TGTACCATGGAGAA-T--GTT--TCAANTC--TA-T-T-T--A-A---TCTTTTTT---CA-AGGAAAA--AAA--GAAAATG----------AA--AATGTA--ATG-ACA-----GT-----AAAG-TATAACATG-CGCAT-CT-TAG-TACTTCAAAGTATG---TGTAT-NTATATTGTA-A---------------------ATAGCA--TCCAATA-TTGCATAAATGTATGTTGTATATATGTAT-AA-ATACAA-CTGATCCTAA--AATTG-ATTTAAA-TGATGACTGTAAAGTCATCAATTTGT-GT-GT-TAT-ATGTG-ANAAAATGC-ACGAAAA--ACAC-A-TTTT--TATGA-TTTGTG-GGG-GTTAT-TA-CGTTGGC-CAAT------GGTAA-CCGTT--A-CC-C-AA-AT-TTCAGTACATGAT--TA-TAAT-CTTTCGAC-AT-TTTTC--CTTTCAGAATA-TA-T-ATGGGTTA-CATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTTATT-TGAGAAATTTTG-TC--AT-TAA-GTTTT-CAAGG-AAAACTTG-AAATTTTCC-GGTAGTTAAAGGGTTAA
Reference ( family-4184 ) : GTCAGAATNTGAAA---ATACAT-----TTA-T--A-TAT-T-GTGACTTTTTCCCCTG-GACT-TCCTAT-GCGTGACTTTT-T-CCCTTTG-AACT-TTC-TTGTCTACATCCTAAGA-AAATTAGA-TCA---TTACTGAAACCTGTAT-ACATAT-TGCA--CA-TAGTT-T------AT------T-------GG-A-CAGTTT----CCCC---TTTCA-T-GG--G-AAGAAA-------AGG-CTGA-AATAGTT-T-AGAAG-GAAATTGA-T-GTAATTAT-TA-------TGTTGCCTACG-AC-AAACAT------A----A--TAT--G--T-TTATAC-T-ACAT-TCT-AATTNTAAACAC--TTTTTTATTCTTAAT-AT--TT--AGA-AAACTTAAGGAT-AA--GTG-AT-TCACTTA-GTTGTCAA-TGGTAATTATGAAA--ATTAAAGTA------AT-TTNA--AACT-TTT----A---AA---CCCTTTTTGAATACTTATAGAC-CA--TTGTA-----TGAAAA-TGTACCATGGAGAA-T--GTT--TCAANTC--TA-T-T-T--A-A---TCTTTTTT---CA-AGGAAAA--AAA--GAAAATG----------AA--AATGTA--ATG-ACA-----GT-----AAAG-TATAACATG-CGCAT-CT-TAG-TACTTCAAAGTATG---TGTAT-NTATATTGTA-A---------------------ATAGCA--TCCAATA-TTGCATAAATGTATGTTGTATATATGTAT-AA-ATACAA-CTGATCCTAA--AATTG-ATTTAAA-TGATGACTGTAAAGTCATCAATTTGT-GT-GT-TAT-ATGTG-ANAAAATGC-ACGAAAA--ACAC-A-TTTT--TATGA-TTTGTG-GGG-GTTAT-TA-CGTTGGC-CAAT------GGTAA-CCGTT--A-CC-C-AA-AT-TTCAGTACATGAT--TA-TAAT-CTTTCGAC-AT-TTTTC--CTTTCAGAATA-TA-T-ATGGGTTA-CATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTTATT-TGAGAAATTTTG-TC--AT-TAA-GTTTT-CAAGG-AAAACTTG-AAATTTTCC-GGTAGTTAAAGGGTTAA
gi|1 : GTCAGAATATGAAA---A-ACATGCAAGTTAAT--AGTAT-T-GTGACTTTTTTCCCTGAGACT-TCCTAT-GCGTGACTTTTGT-TCCTTTG-AACT-TTC-TT-TCT-CATCCGAAGA-ACATTAGA-TCA---TTACTGAAACCTGTAT-ACATATCTGC---CA-TAGTT-T------AT------TAAATATTGG-A-CAGTTTTTCCCCCT---TTTCA-T-GG--GGAAGAAA-------AGG-CTGA-AAT-GTT-T-AGAAG-GAA-TTGA-TTGCAATTAT-TA-------TGTTGCCT-CG-AC-AAACAT------A----C--CAT--GGTT-TTATAC-TGACAT-TCT-AATTCTAAGCAC--TTTTTTATT-TTATTCAT--TT--AGA-AA-CTTAAGGAT-AAA-GTG-AT-TCACTTA-GTTGTCA--TGGTAATTATAAA-----TAAAGT--------TCTTCA--AACT-TTTTAT-A---AA---CCTTTTTTGAATACTT-TAGAC-CA--TTGTA-----T-AAAG-TACGCTA-GGAGAAAT--GTT--TCAA-TC--TA-T-T-TT-A-AGTCTCTTTTTT---CA-AGAAAAAGGAAA--GAAAATGTAATGACAGTAA--AGTATACCATGCACATCTTAGTGCTTCAAAG-TA--ATA-G-TGTAT-TA-TATCTATCT-ATATTATACATTATAT-ATATATTGTATA---------------------ATAGCAATTCCA-TA-TTGCATAAA--------G---ATGTGTAT-AACATACAA-CTGATCCTAA--AAT-G-ATTTAA--TGATGATTGTAAAGTCATCAATTTGTTGT-GT-TAT-GTG-G-ACAAAA-GC-ACGAAAA--ACAC-A-TTTTCTTATGAATTTGTG-GGG-TTTTA-TA-CGTTG-C-CA-T------GGTAA-CCGTT--A-CC-C-AA-ATATTCAGTACATTAT--TA-TAAT---TTCAA---T-TTTTT--CTT--AGAATA-TA-T-ATGGGTTAACATT----ATAAAAATAT-TACTAGAAAACATG--CTTATTTTTTATT-TG-GAAATTTTG-TC--AT-TAG-TTTTT-CAAGA-AAA
gi|10 : aaatgtacaatttttttagtggacattctttcgctatgtactGGTCCTAATGAATT--ATTAGAACTG--GAGTGTAAAGTCATCAGTT-GT-GT-GTCTAT-ATGT--ACAAAATCCTACGAACA--ACAC-C-ATTT--TATGA-TTTGTG-GG---TTAT-TAGCGTTG-C-CAAT------GGTAA-CCGTTTCG-CCGC-AA-AT-TTCAGTACATA----TA-TA---CTCTC-AC-AT-GTTTC--CTTTCA-AATACTAGT-ATGG-TTA-CATT----ATAAAAATAT-TACTAATAA--ATG-CCTTA-TTTTTATT-TTTGAAATTTTG-TCAAAT-T-A-GTTTT-CCAGGAAAAACTTG-AAATTTTCT-GGTA-TTAAAGGGTTAA
gi|11 : ctgAAAATTACATGA-TTGT--GATGA-TTT-TG-GGGAGGTATATA--ATTAGCGTAATCCATTAGGTAAACCATTT-A-C----AA-AT-TTCAGTACATGAT--TG-TAAT-CTT-CGAC-AT-TTTTC--CTTTCAGAATA-TA-T-ATGGGTTA-CATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTTATT-TGAAATGTTCTG-ca
gi|12 : gcACATGATGGTAGTAAT-CTT-CAAC-AT-TTT-CGGCTTTCCGAATA-TA-TCATGGGTTA-CATTTATCACAAGAATATATACTAGAAA--ATG-CCTTATTTTTTATTGTGAGCATTGTTGTTC--ATGTAGTGTTTTGTAAGG--ACACTTG-AAATTTTTC-TGTAGTTAAAGGGTgtagttaaagggttaaatctcgcacacaaagaatt
gi|13 : TGTATGTTGTATATATGTAT-AA-ATACAA-CTGATCCTAA--AATTT-ATTTAAA-TGATGACTGTAAAGTCATCAATTTGT-GT-GT-TAT-ATGTG-AAATAATGC-ACGAAAA--ACAC-aacagtggtagtcaaaagagctgatataaaacgactcatcgccaaa
gi|14 : ccaaatttgaattttaaaatatT-T------AT------T-------GG-A-CAGTTT----CCCCCTATTTCA-T-GG--A-AAGAAA-------AGG-TTGA-AGTAGTT-TTAGAAG-GAA-CTGA-T-GTAATTAT-TA-------TGTTGCAT-TG-AC-AAACATAG----A----A--TAT--G--T-TTATAC-T-ACAT-TCT-AATTATAA
gi|2 : GTCAGAATTTGAAA---ATA-AT-----TTA-T--A-TAT-T-GTGACTTTTTCCCCTGTGACT-TCCTAT-GCGTGA--TTT-T-CCCTTTG-AACTATCC-TGGCCTACATCCTAAGA-AA-TTACA-TCAATTTTACTTGAACCTGTAT-ACATAT-TGCA--CA-TAGTT-T------AT------T-------G--A-CAGTTT----TCCT---TTTCAAT-GG--G-AAGAAA-------AGG-TTGA-AATTGTT-T-AGAAG-GAAATTGA-T-GTAATTAT-TAACTAGTATGTTGCCCACG-AC-AAACAT------A-------TAT--G--T-TTATAC-T-AGAT-TCT-AATTATAAGCAC--TTTTT-ATTCATAAT-AT--TT--AGA-AAAATTAAGGGT-AAT-GTG-AT-TCATTTAAGTTGCCAA-TGGTAATTAATAAA--ATTAAGGTACTGAGTAT-TTAA--AA-T-TTT----A---AAAAACCCCTTTTGA-TACTTGTAGACTCAATTTGTA-----TGAAAA-TTTACC-TGGAGAA-T--GTT--TCAAGTCCCTA-T-T-T--A-A---TTTTATTT---CA-AGGAAAA--AAA--GAAAATA----------AA--AATG-A--ATG-ACA-----AT-----AAAT-TATAATAT--CGCA--CT-TAG-TACTTCAAAGTATG---TGTAT-CTATA-TATA-T---------------------ATAGCG--TCCAAAA-TTG-ATAAATGTATG-TGTATATATGCATAAA-ATACAA-CTGATCCTAA--AATT--ATTTGAA-TGATGACTGTAAAGTCATCAATTTGT-GT-GT-TAT-ATGTG-AAAAAATGC-G-AAAAA--ACAC-A-TTTT--TATGA-TTTGTG-GGG-GTTAT-TA-CGTTGGC-CAAT------GGTAA-CCGTT--A-CCGCAAA-AT-TTCAGTACATTAT--TA-TAATCCTTTCGACAAA-TTTTC--CTTTTAGAATA-TA-T-ATGGGTTA-CATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTTATT-TGAAAAATTTTG-TC--AT-TAA-GGTTT-CAAGG-AAAACTTGAAAATTTTTC--GTAGTTAAAGGATTAAg
gi|3 : AT-GCAAAT-TGCA--CA-TAATT-T------AT------T-------GG-A-CAGTTT----TCCCCTATTTCA-T-CG--G-AAGAAA--------GG-TTGA-AATAGTT-TTAGGAG-GGA-TTGA-T-ATAATTAT-TT-------TGTTGCC-ACG-GT-AAACAT------ATAAAA--TAT--G--T-TTAGAC-T-ACAT-TCT-ACTTCTAAACAC--TTTGT-ATTTTTTAT-CC--TTTCAGA-ATAT------AT-AA--G---AT-TTATTTC-GTTGTCA--TGGTAAATATAAAACAATTAA-GTA------AT-GTCATGAATT-TTTTTTTA---AA---C---TTTTGAATACTTATAGAT-CA--TTGTG-----TGAAAA-TGTACC-TGGAAAA-TATGTT--TCAATTC--TAAT-T-C--A-A---TCTTTTTTTTTCA-AGGAAAA--AAG--GAA---G----------AA--AATGTA--ATG-ACA-----GT-----AAAG-TA-AA-ATG-CGCA--CT-TTG-TACTTCAATGTATG---TGTAT-ATATATTGTA-A---------------------ATAACA--TCCAATA-TTGCATAAATATATGTTGTATATATGTAT-AA-ATACAA-TTGATCCTAA--AATTG-ATTTAAA-TGATGACTGTAAAGTAATCAATTCGT-GT-TT-TAT-ATGTG-AAAAAATGC-ACGAAAA--ACAC-A-TTTT--TATCA-TTTGT--GGG-GTTAT-TA-CGTT-GC-C-AT------GGTAA-CCGTT--ACCC-C-AA-AT-TTCATTACATGAT--TA-TAAT-C-TTCGAC-AT-TTTTC--CTTTCAGAATA-TA-T-TTGGGTTA-CATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTCATT-TGAAAA--TTTG-TC--AT-T-A-GTTTT-GAAGG-AAAACTTT-AAATTTTCT-GGTAGTTAAAGGGTTAA
gi|4 : tgGTCATAATATGAAA---ATACAT-----GCA-TTAA-TATAT-GTGACTTTTCCCCGTG--ACT-TCTCATAGCGTGACTTTT-T-CCCTTTG--ACT-TTCTTTGTCTACATCCTAAGATAAACTAGACTCA---TTACTGAAACCTGTATCACATAT-TGCATTCA-TAGTT-TGGTTAAAA------T-------GG-A-CAGTTT----CCCC---TATCA-TAGG--G-AAGAAAAAGACACAGG-CTAG-AATAGTT----GAAGAGAAGGTGA-T-GTAATTATGTA-------T-TTCCCT-CG-AC-AAACTT------AAC--A--TAC--G--TGTTATATAT-ACATATCT-AATTGCAAACACTGTTTTTTA-TCTTACT-AT--TT--AGA-AAACTTAAGGATCAAACGTGCATGTCAC-TA-GTTGTCCATTGGGAATTATGAAA--AATAAAGGA------TC-TTAA--AACT-TTT----A---A------CCTTTTAAATACTTATA-AC-CA--TTGTATAGTCTGAAAATTGTACCAAGGAGAA-----TT--TCACATA--TA-TAT-T--A-A---TC--TTTT---CA-AG--AAA--AAA--GAAAGTG----------AATGAGAGTAGGAAG-ACA-----G------AAGGTTATAACATG-CGCGCACTGTAG-T-----GGAGGGTG---TGCATCGTGTAAAGTA-C---------------------TTA--A--TCTAATA-TCG----AGTATATATTTTA
gi|5 : gtaccatacagtttgactttttacatgccattcttctattagtactAT-TA-------TGTCGCC-ACG-GC-AAACAT------A----AAATAT--G--T-TTATAC-T-ACAT-TCT-AATTCTATACAC--TTCGT-ACTCTTA-T-AT--TT--AGA-AAACT---------A--G-G-AT-TCGTTTA-GTTGCCA--TGGTCATTATAAAA--TTTAAAGTA------AT-TT-A--AACT-TTT----TTTTAA---CCTTTTTT-AATACTTATAGAC-CA--TTGTA-----TGAAAA-TATACCATTTA-AA-T--GTT--TCGATTT--TA-T-T-TTGA-T---TTTTTTTT---CA-AGGAAAA--AAATTG-----G----------AA--AATCTA--TTG-ACA-----GTGA---AAAG-TATAGCATG-CGCA--CT-TA--TCCTTCAAATCATG---TGTTT-GTGTGTTGTA-A---------------------ATAACA--TTCAATA-CTATAGAAATATATGTTGTATATTTGTAT-AA-ATATAA-GTGGTCCTAA----TTCTATTTAAT-TGATGACATTAAATTCATCAATTTGT-GT-GT-TTT-ATGTGGAAAAAATAC-ACGAAAA--ACAC-A-TTTT--TATGA-TTTGT--GGG-GTTAT-GT-TGTTGGC---AT------GGTAA-CCGAT--A-CC-C-CATAT-TTCAGTACATGAT--TA-ACAT-C-TTCAAC-ATGTTTCC--CTTT-----TA-TA-T-ATAGGTTA-CATT----ATAAGAATAT-TACTAGAAA--ATG-CCGTATTTTTCATT-T--TAAATTTTG-TC--AT-T-A-GTTTT-GAAGG-AAAACTTG-ATTTTTTTTAAGTAGTTAATGGGTTAAatttattgtggagttccaatagtgcctataccgcctattggtttatatagt
gi|6 : aGTCAGAATTTGAAATACATGCAT-----TTA----A-TAT---ATG-----------TA-GACT-TCCTAT-GCGTGACTTTT-TTCCCTTTG-A-CT-TTT-TT---TACATTCTAAGA-AA-TTAGA-TCA---TTACTGAAACCTGTAT-ACATAT-TGCA--CA-TAGTT-T------ATTAAATAT-------GG-ACCAGTTC----CCTA---TTTCA-T-GG--G-AAG--A-------AGG-CTGA-AATAGTT-T-TGAAG-AAGATTGA-T-GTA--TAT-TA-------TGTTGCCT-CG-A--AAACAT------A----A--CATAGG--T-TTATAC-T-ACAT-TCT-AATTCTAAACAC---TTTTTATTCT--AT-TT--TT--AGA-AAATCTAAGGAT-AA--GTG-AG-TCACTTA-GTTGTCCA-TGGTAATTATGAAA--ATATAAGTA------AT-TTAA--AAGTGTTT----A---AA----CCTTTTTGAATACTTATAAAC-CA--TTGTA-----TGAAAA-TGTAa
gi|7 : gactgtttttacagtgacattctttcctattagtact--A-TAT-TAGTGACTTTTTCCCTT---ACTATCCTAT-GTGTGACTTTT-T-CCCTGCGAAACT-TTC-T--TC--CACCCTTAGA-AAATTACA-TCA---T------AAC----AT-ATATTC-TGCA--CACTATTTCT------AT------T-------GGTA-CAAGTC----CCCCTA-TTTCA-T-GGAAA-AAGAAA-------AGGTTTGATAGTATTTAT-AGAAG---AACTGACT-GTAA-TA--TA-------TGTTGCA-ATGCACAAAACATAGTAGGA----A--TAT--G--T-ATATAC----CAT-TCTCAATTAT-AACAC--TTTTTTATTATCAAG-ATGATC--TGATAAAATCCAGGAC-AA--GTA-A
gi|8 : tttcgtcgcacccaactccaatggaagagtgctactaatatcaaaccatttaattataatcGTA-A---------------------ATAGCA--TC-AATA-TTGCATAAATGTATGT-GTGTATATGTAT-AA-ATACAAACTGATCCTAA--AATTG-ATTTAAA--GATGATTG--AAGTCATCATTTTGT-GTTGTATATTATGTG-ACAACATGC-ACGAAAA---CAC-AATTTT--TATGA-TTTGTG-GGG--TTAT-TA-C-TTGCC-TG--------GGTAA-CCGTT--A-CC-C-AA-AT-TTCAGTA-ATGAT--TA-TAAT-CTT-CAA--AT-TTTTC--CTT-CAGAATA-TA-T-ATGGGTTA-CAT-----ATATAAATAT-TACTAGAAA--ATGACCTTATTTTT-ATT-TGAT---TTTTG-TC--AT-TA--GTTTT-CAAGG-AAAACTTG-CAGTTTTCC-GGTAGTTAAAGGGTTAAataagttcgagtt
gi|9 : AGAC-----TTGTAC----TGCAAA-TGTACCA-GGAGAA-T--GTTCATCAAATC--TA-T-TCT--ATA---TCGTTTTT---CATAGGAAAA--AAA----AAAGG----------AA--AATGTA--ATG-ACA-----GT------AAG-TATAACAAGCCGCTT-CT-TAG-TACTTCAAAGTATG---TGTAT-CTATATC-TA-ATATATTTTATATATACTATGTATAGCA--TCC-ATATTTGCATAA--GTATGCTCTATA-ATG-AT-AA-ATACAA-CTGA--CCAA--AATTG-ATT--AA-TGATGA-TGT-AGGTCATC-ATTTG--GT-G--TAT-ATGTG-ACAAAATGC-ACG---A--ACAC-A---TT--TATGA--TTGTGTTGG-GTTAT-TA-CGT--GC-C-AT------GGTAA--CGAT--A-CC-acgtaataaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTTCTAGTTGTTAAATAGCAGTGGTAGCCAAAACAGTGATATTAAGACTTATCCCAA
Unaligned ( gi|16 ): TTTTACAGTGACTTCTTTCCTAATTAGTACTGTCAGAATTTGAA
Alignments
lowQualScore : 111 333333333333 111 222 222222 1 111 2222222222222222222222 1111 222 1111111 111 1 1111111 22 33333333333333 1 11 22 111111 333333333333333 22222 11 1111 2222222222 111 22222222 22 1111 2222222 5555555555555555555555 1111111 1111 11 1 22222222222 11 1 1111 222 11
lowQualScore : 1 777 3 2 222222222222 8 666 0 3 444 8 8 8 8 999 8 8 000000 8 0 8 444 0 6 6 99 6 5 8888888888888888888888 5 5 2222 777 5 5 8888 8888888 5 5 1 555 5 4 5 5 1 5 6666666 66 5 5 66666666666666 66 66 5 777 5 5 1 77 2 0 3 0 5 5 77 77 5 6666 5 99 666 6 6 22 0 99 1 999999 6 99 5 6 999999999999999 1 1 5 77 00000 5 99 1 5555 99 7 99 6 6 0000000000 3 111 6 6 44444444 99 99 99 6 1 6 44 6 5 4444 1111111 77 3 1 0000000000000000000000 5 1 5 5 8 8888888 2222 0 5 5 5 66 33 44 5 3 0 5 5 0 5 5 1 5 66 4 55 66 5 77 77 5 5 7 55555555555 5 11 5 0 5 5 5 66 5 55 3 9 5555 5 66 44 5 5 5 5 0000 5 66 5 0 5 88888 5 77 5 000 5 5 6 11
lowQualScore : . ... . . ............ . ... . . ... . . . . ... . . ...... . . . ... . . . .. . . ...................... . . .... ... . . .... ....... . . . ... . . . . . . ....... .. . . .............. .. .. . ... . . . .. . . . . . . .. .. . .... . .. ... . . .. . .. . ...... . .. . . ............... . . . .. ..... . .. . .... .. . .. . . .......... . ... . . ........ .. .. .. . . . .. . . .... ....... .. . . ...................... . . . . . ....... .... . . . . .. .. .. . . . . . . . . . . .. . .. .. . .. .. . . . ........... . .. . . . . . .. . .. . . .... . .. .. . . . . .... . .. . . . ..... . .. . ... . . . ..
lowQualScore : 0 555 2 5 000000000000 0 888 8 2 222 0 0 0 0 666 0 0 888888 0 6 0 000 8 7 7 22 7 7 1111111111111111111111 7 7 1111 999 7 7 1111 6666666 7 7 7 111 7 1 7 7 4 0 2222222 88 0 0 88888888888888 99 99 0 111 0 0 0 99 0 1 0 1 1 7 99 99 7 7777 7 33 666 7 7 22 3 22 7 222222 7 22 2 7 777777777777777 0 7 7 99 00000 7 00 0 0000 22 5 22 7 7 7777777777 2 777 7 7 00000000 22 22 22 7 0 7 77 7 7 2222 7777777 77 5 7 1111111111111111111111 3 7 7 7 9 4444444 1111 1 7 7 7 99 88 22 0 4 1 0 0 0 0 0 0 0 11 4 44 99 0 55 55 0 0 6 00000000000 0 99 0 0 7 7 7 99 0 11 2 4 8888 0 99 66 0 0 0 0 6666 0 99 0 9 0 22222 0 99 7 000 7 7 7 88
consensus : GTCAGAATNTGAAA---ATACAT-----TTA-T--A-TAT-T-GTGACTTTTTCCCCTG-GACT-TCCTAT-GCGTGACTTTT-T-CCCTTTG-AACT-TTC-TTGTCTACATCCTAAGA-AAATTAGA-TCA---TTACTGAAACCTGTAT-ACATAT-TGCA--CA-TAGTT-T------AT------T-------GG-A-CAGTTT----CCCC---TTTCA-T-GG--G-AAGAAA-------AGG-CTGA-AATAGTT-T-AGAAG-GAAATTGA-T-GTAATTAT-TA-------TGTTGCCTACG-AC-AAACAT------A----A--TAT--G--T-TTATAC-T-ACAT-TCT-AATTNTAAACAC--TTTTTTATTCTTAAT-AT--TT--AGA-AAACTTAAGGAT-AA--GTG-AT-TCACTTA-GTTGTCAA-TGGTAATTATAAAA--ATTAAAGTA------AT-TTAA--AACT-TTT----A---AA---CCCTTTTTGAATACTTATAGAC-CA--TTGTA-----TGAAAA-TGTACCATGGAGAA-T--GTT--TCAANTC--TA-T-T-T--A-A---TCTTTTTT---CA-AGGAAAAAAA--GAAAA-GAA--AATGTA--ATGACAGT--AAAG-TATAACATG-CGCAT-CT-TAGTACTTCAAAGTA----TGTG-------TAT-NTATATTGTAA---------------------ATAGCATCCA-ATA-TTGCATAA-A-----TGTATGTTGTAT----ATATGTAT-AA-ATACAA-CTGATCCTAA--AATTG-ATTTAAA-TGATGACTGTAAAGTCATCAATTTG-TGT-GT-TAT-ATGTG-ANAAAATGC-ACGAAAA--ACAC-A-TTT--TTATG-ATTTGTG-GGG-GTTAT-TA-CGTTGGC-CAAT------GGTAA-CCGTT--A-CC-C-AA-AT-TTCAGTACATGAT--TA-TAAT-CTTTCGAC-AT-TTTTC--CTTTCAGAATA-TA-T-ATGGGTT-ACATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTTATT-TGAGAAATTTTG-TC--AT-TAA-GTTTT-CAAGG-AAAACTTG-AAATTTTCC-GGTAGTTAAAGGGTTAA
Reference ( family-4184 ) : GTCAGAATNTGAAA---ATACAT-----TTA-T--A-TAT-T-GTGACTTTTTCCCCTG-GACT-TCCTAT-GCGTGACTTTT-T-CCCTTTG-AACT-TTC-TTGTCTACATCCTAAGA-AAATTAGA-TCA---TTACTGAAACCTGTAT-ACATAT-TGCA--CA-TAGTT-T------AT------T-------GG-A-CAGTTT----CCCC---TTTCA-T-GG--G-AAGAAA-------AGG-CTGA-AATAGTT-T-AGAAG-GAAATTGA-T-GTAATTAT-TA-------TGTTGCCTACG-AC-AAACAT------A----A--TAT--G--T-TTATAC-T-ACAT-TCT-AATTNTAAACAC--TTTTTTATTCTTAAT-AT--TT--AGA-AAACTTAAGGAT-AA--GTG-AT-TCACTTA-GTTGTCAA-TGGTAATTATAAAA--ATTAAAGTA------AT-TTAA--AACT-TTT----A---AA---CCCTTTTTGAATACTTATAGAC-CA--TTGTA-----TGAAAA-TGTACCATGGAGAA-T--GTT--TCAANTC--TA-T-T-T--A-A---TCTTTTTT---CA-AGGAAAAAAA--GAAAATGAA--AATGTA--ATGACAGT--AAAG-TATAACATG-CGCAT-CT-TAGTACTTCAAAGTA----TGTG-------TAT-NTATATTGTAA---------------------ATAGCATCCA-ATA-TTGCATAA-A-----TGTATGTTGTAT----ATATGTAT-AA-ATACAA-CTGATCCTAA--AATTG-ATTTAAA-TGATGACTGTAAAGTCATCAATTTG-TGT-GT-TAT-ATGTG-ANAAAATGC-ACGAAAA--ACAC-A-TTT--TTATG-ATTTGTG-GGG-GTTAT-TA-CGTTGGC-CAAT------GGTAA-CCGTT--A-CC-C-AA-AT-TTCAGTACATGAT--TA-TAAT-CTTTCGAC-AT-TTTTC--CTTTCAGAATA-TA-T-ATGGGTT-ACATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTTATT-TGAGAAATTTTG-TC--AT-TAA-GTTTT-CAAGG-AAAACTTG-AAATTTTCC-GGTAGTTAAAGGGTTAA
gi|1 : GTCAGAATATGAAA---A-ACATGCAAGTTAAT--AGTAT-T-GTGACTTTTTTCCCTGAGACT-TCCTAT-GCGTGACTTTTGT-TCCTTTG-AACT-TTC-TT-TCT-CATCCGAAGA-ACATTAGA-TCA---TTACTGAAACCTGTAT-ACATATCTGC---CA-TAGTT-T------AT------TAAATATTGG-A-CAGTTTTTCCCCCT---TTTCA-T-GG--GGAAGAAA-------AGG-CTGA-AAT-GTT-T-AGAAG-GAA-TTGA-TTGCAATTAT-TA-------TGTTGCCT-CG-AC-AAACAT------A----C--CAT--GGTT-TTATAC-TGACAT-TCT-AATTCTAAGCAC--TTTTTTATT-TTATTCAT--TT--AGA-AA-CTTAAGGAT-AAA-GTG-AT-TCACTTA-GTTGTCA--TGGTAATTATAAA-----TAAAGT--------TCTTCA--AACT-TTTTAT-A---AA---CCTTTTTTGAATACTT-TAGAC-CA--TTGTA-----T-AAAG-TACGCTA-GGAGAAAT--GTT--TCAA-TC--TA-T-T-TT-A-AGTCTCTTTTTT---CA-AG---AAAAA--GGAAA-GAA--AATGTA--ATGACAGT--AAAG-TATACCATG-CACAT-CT-TAGTGCTTCAAAGTAATAGTGTATTATATCTAT-CTATATTATAC---------------------AT--TATATATATA-TTGTATAATAGCAATTCCATATTGCATAAAGATGTGTAT-AACATACAA-CTGATCCTAA--AA-TG-ATTT-AA-TGATGATTGTAAAGTCATCAATTTGTTGT-GT-TAT-GTG-G-ACAAAA-GC-ACGAAAA--ACAC-A-TTTTCTTATGAATTTGTG-GGG-TTTTA-TA-CGTT-GC-C-AT------GGTAA-CCGTT--A-CC-C-AA-ATATTCAGTACATTAT--TA-TAA---TTTCA---AT-TTTTT--CTT--AGAATA-TA-T-ATGGGTTAACATT----ATAAAAATAT-TACTAGAAAACATG--CTTATTTTTTATT-TG-GAAATTTTG-TC--AT-TAG-TTTTT-CAAGA-AAA
gi|10 : aaatgtacaatttttttagtggacattctttcgctatgtactGGTCCTAATGAATT--ATTAGAACTG--GAGTGTAAAGTCATCAGTT-G-TGT-GTCTAT-ATGT--ACAAAATCCTACGAACA--ACAC-C-ATT--TTATG-ATTTGTG-GG---TTAT-TAGCGTTG-C-CAAT------GGTAA-CCGTTTCG-CCGC-AA-AT-TTCAGTACATA----TA-TA---CTCTC-AC-AT-GTTTC--CTTTCA-AATACTAGT-ATGG-TT-ACATT----ATAAAAATAT-TACTAATAA--ATG-CCTTA-TTTTTATT-TTTGAAATTTTG-TCAAAT-T-A-GTTTT-CCAGGAAAAACTTG-AAATTTTCT-GGTA-TTAAAGGGTTAA
gi|11 : ctgAAAATTACATGA-TTG--TGATG-ATTT-TG-GGGAGGTATATA--ATTAGCGTAATCCATTAGGTAAACCATTT-A-C----AA-AT-TTCAGTACATGAT--TG-TAAT-CTT-CGAC-AT-TTTTC--CTTTCAGAATA-TA-T-ATGGGTT-ACATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTTATT-TGAAATGTTCTG-ca
gi|12 : gcACATGATGGTAGTAAT-CTT-CAAC-AT-TTT-CGGCTTTCCGAATA-TA-TCATGGGTT-ACATTTATCACAAGAATATATACTAGAAA--ATG-CCTTATTTTTTATTGTGAGCATTGTTGTTC--ATGTAGTGTTTTGTAAGG--ACACTTG-AAATTTTTC-TGTAGTTAAAGGGTgtagttaaagggttaaatctcgcacacaaagaatt
gi|13 : -----TGTATGTTGTAT----ATATGTAT-AA-ATACAA-CTGATCCTAA--AATTT-ATTTAAA-TGATGACTGTAAAGTCATCAATTTG-TGT-GT-TAT-ATGTG-AAATAATGC-ACGAAAA--ACAC-aacagtggtagtcaaaagagctgatataaaacgactcatcgccaaa
gi|14 : ccaaatttgaattttaaaatatT-T------AT------T-------GG-A-CAGTTT----CCCCCTATTTCA-T-GG--A-AAGAAA-------AGG-TTGA-AGTAGTT-TTAGAAG-GAA-CTGA-T-GTAATTAT-TA-------TGTTGCAT-TG-AC-AAACATAG----A----A--TAT--G--T-TTATAC-T-ACAT-TCT-AATTATAA
gi|2 : GTCAGAATTTGAAA---ATA-AT-----TTA-T--A-TAT-T-GTGACTTTTTCCCCTGTGACT-TCCTAT-GCGTGA--TTT-T-CCCTTTG-AACTATCC-TGGCCTACATCCTAAGA-AA-TTACA-TCAATTTTACTTGAACCTGTAT-ACATAT-TGCA--CA-TAGTT-T------AT------T-------G--A-CAGTTT----TCCT---TTTCAAT-GG--G-AAGAAA-------AGG-TTGA-AATTGTT-T-AGAAG-GAAATTGA-T-GTAATTAT-TAACTAGTATGTTGCCCACG-AC-AAACAT------A-------TAT--G--T-TTATAC-T-AGAT-TCT-AATTATAAGCAC--TTTTT-ATTCATAAT-AT--TT--AGA-AAAATTAAGGGT-AAT-GTG-AT-TCATTTAAGTTGCCAA-TGGTAATTAATAAA--ATTAAGGTACTGAGTAT-TTAA--AA-T-TTT----A---AAAAACCCCTTTTGA-TACTTGTAGACTCAATTTGTA-----TGAAAA-TTTACC-TGGAGAA-T--GTT--TCAAGTCCCTA-T-T-T--A-A---TTTTATTT---CA-AGGAAAAAAA--GAAAATAAA--AATG-A--ATGACAAT--AAAT-TATAATAT--CGCA--CT-TAGTACTTCAAAGTA----TGTG-------TAT-CTATA-TATAT---------------------ATAGCGTCCA-AAA-TTG-ATAA-A-----TGTATG-TGTAT----ATATGCATAAA-ATACAA-CTGATCCTAA--AATT--ATTTGAA-TGATGACTGTAAAGTCATCAATTTG-TGT-GT-TAT-ATGTG-AAAAAATGC-G-AAAAA--ACAC-A-TTT--TTATG-ATTTGTG-GGG-GTTAT-TA-CGTTGGC-CAAT------GGTAA-CCGTT--A-CCGCAAA-AT-TTCAGTACATTAT--TA-TAATCCTTTCGACAAA-TTTTC--CTTTTAGAATA-TA-T-ATGGGTT-ACATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTTATT-TGAAAAATTTTG-TC--AT-TAA-GGTTT-CAAGG-AAAACTTGAAAATTTTTC--GTAGTTAAAGGATTAAg
gi|3 : AT-GCAAAT-TGCA--CA-TAATT-T------AT------T-------GG-A-CAGTTT----TCCCCTATTTCA-T-CG--G-AAGAAA--------GG-TTGA-AATAGTT-TTAGGAG-GGA-TTGA-T-ATAATTAT-TT-------TGTTGCC-ACG-GT-AAACAT------ATAAAA--TAT--G--T-TTAGAC-T-ACAT-TCT-ACTTCTAAACAC--TTTGT-ATTTTTTAT-CC--TTTCAGA-ATAT------AT-AA--G---AT-TTATTTC-GTTGTCA--TGGTAAATATAAAACAATTAA-GTA------AT-GTCATGAATT-TTTTTTTA---AA---C---TTTTGAATACTTATAGAT-CA--TTGTG-----TGAAAA-TGTACC-TGGAAAA-TATGTT--TCAATTC--TAAT-T-C--A-A---TCTTTTTTTTTCA-AGGAAAAAAG--GAA---GAA--AATGTA--ATGACAGT--AAAG-TA-AA-ATG-CGCA--CT-TTGTACTTCAATGTA----TGTG-------TAT-ATATATTGTAA---------------------ATAACATCCA-ATA-TTGCATAA-A-----TATATGTTGTAT----ATATGTAT-AA-ATACAA-TTGATCCTAA--AATTG-ATTTAAA-TGATGACTGTAAAGTAATCAATTCG-TGT-TT-TAT-ATGTG-AAAAAATGC-ACGAAAA--ACAC-A-TTT--TTATC-ATTTGT--GGG-GTTAT-TA-CGTT-GC-C-AT------GGTAA-CCGTT--ACCC-C-AA-AT-TTCATTACATGAT--TA-TAAT-C-TTCGAC-AT-TTTTC--CTTTCAGAATA-TA-T-TTGGGTT-ACATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTCATT-TGAAAA--TTTG-TC--AT-T-A-GTTTT-GAAGG-AAAACTTT-AAATTTTCT-GGTAGTTAAAGGGTTAA
gi|4 : tgGTCATAATATGAAA---ATACAT-----GCA-TTAA-TATAT-GTGACTTTTCCCCGTG--ACT-TCTCATAGCGTGACTTTT-T-CCCTTTG--ACT-TTCTTTGTCTACATCCTAAGATAAACTAGACTCA---TTACTGAAACCTGTATCACATAT-TGCATTCA-TAGTT-TGGTTAAAA------T-------GG-A-CAGTTT----CCCC---TATCA-TAGG--G-AAGAAAAAGACACAGG-CTAG-AATAGTT----GAAGAGAAGGTGA-T-GTAATTATGTA-------T-TTCCCT-CG-AC-AAACTT------AAC--A--TAC--G--TGTTATATAT-ACATATCT-AATTGCAAACACTGTTTTTTA-TCTTACT-AT--TT--AGA-AAACTTAAGGATCAAACGTGCATGTCAC-TA-GTTGTCCATTGGGAATTATGAAA--AATAAAGGA------TC-TTAA--AACT-TTT----A---A------CCTTTTAAATACTTATA-AC-CA--TTGTATAGTCTGAAAATTGTACCAAGGAGAA-----TT--TCACATA--TA-TAT-T--A-A---TC--TTTT---CA-AG--AAAAAA--GAAAGTGAATGAGAGTAGGAAGACAG---AAGGTTATAACATG-CGCGCACTGTAGT-----GGAGGG----TGTG-------CATCGTGTAAAGTAC---------------------TTA--ATCTA-ATA-TCG----A-G-----TATATATTTTA
gi|5 : gtaccatacagtttgactttttacatgccattcttctattagtactAT-TA-------TGTCGCC-ACG-GC-AAACAT------A----AAATAT--G--T-TTATAC-T-ACAT-TCT-AATTCTATACAC--TTCGT-ACTCTTA-T-AT--TT--AGA-AAACT---------A--G-G-AT-TCGTTTA-GTTGCCA--TGGTCATTATAAAA--TTTAAAGTA------AT-TTAA--A-CT-TTT----TTTTAA---CCTTTTTT-AATACTTATAGAC-CA--TTGTA-----TGAAAA-TATACCATTTA-AA-T--GTT--TCGATTT--TA-T-T-TTGA-T---TTTTTTTT---CA-AGGAAAAAAATTG-----GAA--AATCTA--TTGACAGTGAAAAG-TATAGCATG-CGCA--CT-TA-TCCTTCAAATCA----TGTG-------TTT-GTGTGTTGTAA---------------------ATAACATTCA-ATA-CTATAGAA-A-----TATATGTTGTAT----ATTTGTAT-AA-ATATAA-GTGGTCCTAA----TTCTATTTAAT-TGATGACATTAAATTCATCAATTTG-TGT-GT-TTT-ATGTGGAAAAAATAC-ACGAAAA--ACAC-A-TTT--TTATG-ATTTGT--GGG-GTTAT-GT-TGTTGGC---AT------GGTAA-CCGAT--A-CC-C-CATAT-TTCAGTACATGAT--TA-ACAT-C-TTCAAC-ATGTTTCC--CTTT-----TA-TA-T-ATAGGTT-ACATT----ATAAGAATAT-TACTAGAAA--ATG-CCGTATTTTTCATT-T--TAAATTTTG-TC--AT-T-A-GTTTT-GAAGG-AAAACTTG-ATTTTTTTTAAGTAGTTAATGGGTTAAatttattgtggagttccaatagtgcctataccgcctattggtttatatagt
gi|6 : aGTCAGAATTTGAAATACATGCAT-----TTA----A-TAT---ATG-----------TA-GACT-TCCTAT-GCGTGACTTTT-TTCCCTTTG-A-CT-TTT-TT---TACATTCTAAGA-AA-TTAGA-TCA---TTACTGAAACCTGTAT-ACATAT-TGCA--CA-TAGTT-T------ATTAAATAT-------GG-ACCAGTTC----CCTA---TTTCA-T-GG--G-AAG--A-------AGG-CTGA-AATAGTT-T-TGAAG-AAGATTGA-T-GTA--TAT-TA-------TGTTGCCT-CG-A--AAACAT------A----A--CATAGG--T-TTATAC-T-ACAT-TCT-AATTCTAAACAC---TTTTTATTCT--AT-TT--TT--AGA-AAATCTAAGGAT-AA--GTG-AG-TCACTTA-GTTGTCCA-TGGTAATTATGAAA--ATATAAGTA------AT-TTAA--AAGTGTTT----A---AA----CCTTTTTGAATACTTATAAAC-CA--TTGTA-----TGAAAA-TGTAa
gi|7 : gactgtttttacagtgacattctttcctattagtact--A-TAT-TAGTGACTTTTTCCCTT---ACTATCCTAT-GTGTGACTTTT-T-CCCTGCGAAACT-TTC-T--TC--CACCCTTAGA-AAATTACA-TCA---T------AAC----AT-ATATTC-TGCA--CACTATTTCT------AT------T-------GGTA-CAAGTC----CCCCTA-TTTCA-T-GGAAA-AAGAAA-------AGGTTTGATAGTATTTAT-AGAAG---AACTGACT-GTAA-TA--TA-------TGTTGCA-ATGCACAAAACATAGTAGGA----A--TAT--G--T-ATATAC----CAT-TCTCAATTAT-AACAC--TTTTTTATTATCAAG-ATGATC--TGATAAAATCCAGGAC-AA--GTA-A
gi|8 : tttcgtcgcacccaactccaatggaagagtgctactaatatcaaaccatttaattataatcGTAA---------------------ATAGCATC-A-ATA-TTGCATAA-A-----TGTATGT-GTGT----ATATGTAT-AA-ATACAAACTGATCCTAA--AATTG-ATTTAAA--GATGATTG--AAGTCATCATTTTG-TGTTGTATATTATGTG-ACAACATGC-ACGAAAA---CAC-AATTT--TTATG-ATTTGTG-GGG--TTAT-TA-C-TTGCC-TG--------GGTAA-CCGTT--A-CC-C-AA-AT-TTCAGTA-ATGAT--TA-TAAT-CTT-CAA--AT-TTTTC--CTT-CAGAATA-TA-T-ATGGGTT-ACAT-----ATATAAATAT-TACTAGAAA--ATGACCTTATTTTT-ATT-TGAT---TTTTG-TC--AT-TA--GTTTT-CAAGG-AAAACTTG-CAGTTTTCC-GGTAGTTAAAGGGTTAAataagttcgagtt
gi|9 : AGAC-----TTGTAC----TGCAAA-TGTACCA-GGAGAA-T--GTTCATCAAATC--TA-T-TCT--ATA---TCGTTTTT---CATAGGAAAAAAA----AAAGGAA--AATGTA--ATGACAGT---AAG-TATAACAAGCCGCTT-CT-TAGTACTTCAAAGTA----TGTG-------TAT-CTATATC-TAATATATTTTATATATACTATGTATAGCATCC--ATATTTGCATAA--------GTATGCTCTAT----A-ATG-AT-AA-ATACAA-CTGA--CCAA--AATTG-ATT--AA-TGATGA-TGT-AGGTCATC-ATTTG--GT-G--TAT-ATGTG-ACAAAATGC-ACG---A--ACAC-A---T--TTATG-A-TTGTGTTGG-GTTAT-TA-CGT--GC-C-AT------GGTAA--CGAT--A-CC-acgtaataaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTTCTAGTTGTTAAATAGCAGTGGTAGCCAAAACAGTGATATTAAGACTTATCCCAA
Unaligned ( gi|16 ): TTTTACAGTGACTTCTTTCCTAATTAGTACTGTCAGAATTTGAA
Alignments
lowQualScore : 111 333333333333 111 222 222222 1 111 2222222222222222222222 1111 222 1111111 111 1 1111111 22 33333333333333 1 11 22 111111 333333333333333 22222 11 2222222222222222 555555555555555555 11 333333333333 22 111 55555555555555555555555 11 1 22222222222 11 1 1111 222 11
lowQualScore : 1 777 3 2 222222222222 8 666 0 3 444 8 8 8 8 999 8 8 000000 8 0 8 444 0 6 6 99 6 5 8888888888888888888888 5 5 2222 777 5 5 8888 8888888 5 5 1 555 5 4 5 5 1 5 6666666 66 5 5 66666666666666 66 66 5 777 5 5 1 77 2 0 3 0 5 5 77 77 5 6666 5 99 666 6 6 22 0 99 1 999999 6 99 5 6 999999999999999 1 1 5 77 00000 5 99 1 99 6 99 7 99 6 6 1111111111111111 6 1 99 111111111111111111 6 99 88 6 444444444444 6 7 3 888 44 6 99 3 2 111 77 3 22222222222222222222222 1 77 5 6 00 22 0 5 5 5 66 33 0 55 3 0 5 5 0 5 5 1 5 66 4 55 66 5 77 77 5 5 77 55555555555 5 11 5 0 5 5 5 66 5 99999 4 77 5 66 44 5 5 5 5 0000 5 66 5 0 5 88888 5 77 5 000 5 5 6 11
lowQualScore : . ... . . ............ . ... . . ... . . . . ... . . ...... . . . ... . . . .. . . ...................... . . .... ... . . .... ....... . . . ... . . . . . . ....... .. . . .............. .. .. . ... . . . .. . . . . . . .. .. . .... . .. ... . . .. . .. . ...... . .. . . ............... . . . .. ..... . .. . .. . .. . .. . . ................ . . .. .................. . .. .. . ............ . . . ... .. . .. . . ... .. . ....................... . .. . . .. .. . . . . .. .. . .. . . . . . . . . . .. . .. .. . .. .. . . .. ........... . .. . . . . . .. . ..... . .. . .. .. . . . . .... . .. . . . ..... . .. . ... . . . ..
lowQualScore : 0 555 2 5 000000000000 0 888 8 2 222 0 0 0 0 666 0 0 888888 0 6 0 000 8 7 7 22 7 7 1111111111111111111111 7 7 1111 999 7 7 1111 6666666 7 7 7 111 7 1 7 7 4 0 2222222 88 0 0 88888888888888 99 99 0 111 0 0 0 99 0 1 0 1 1 7 99 99 7 7777 7 33 666 7 7 22 3 22 7 222222 7 22 2 7 777777777777777 0 7 7 99 00000 7 00 0 22 7 22 5 22 7 7 8888888888888888 7 0 22 333333333333333333 7 22 33 7 333333333333 7 3 7 555 77 7 22 2 5 777 77 5 44444444444444444444444 7 99 7 6 33 11 1 7 7 7 99 88 4 44 4 1 0 0 0 0 0 0 0 11 4 44 99 0 55 55 0 0 00 00000000000 0 99 0 0 7 7 7 99 0 88888 2 55 0 99 66 0 0 0 0 6666 0 99 0 9 0 22222 0 99 7 000 7 7 7 88
consensus : GTCAGAATNTGAAA---ATACAT-----TTA-T--A-TAT-T-GTGACTTTTTCCCCTG-GACT-TCCTAT-GCGTGACTTTT-T-CCCTTTG-AACT-TTC-TTGTCTACATCCTAAGA-AAATTAGA-TCA---TTACTGAAACCTGTAT-ACATAT-TGCA--CA-TAGTT-T------AT------T-------GG-A-CAGTTT----CCCC---TTTCA-T-GG--G-AAGAAA-------AGG-CTGA-AATAGTT-T-AGAAG-GAAATTGA-T-GTAATTAT-TA-------TGTTGCCTACG-AC-AAACAT------A----A--TAT--G--T-TTATAC-T-ACAT-TCT-AATTNTAAACAC--TTTTTTATTCTTAAT-AT--TT--AGA-AAACTTAAGGAT-AA--GTG-AT-TCACTTA-GTTGTCAA-TGGTAATTATAAAA--ATTAAAGTA------AT-TTAA--AACT-TTT----A---AA---CCCTTTTTGAATACTTATAGAC-CA--TTGTA-----TGAAAA-TGTACCATGGAGA--A-TGTT--TCAANTC--T-AT-T-T--A-A---TC---TTTTTTCA-AGGAAAA--AAA--GAAA----------A-G-AA--AATGTA--ATG-ACA-----GT-----AAAG-TATAACATG-CGCAT-CT-TAG-TACTTCAAAGTATG---TGTAT-NTATATTGTA-A---------------------ATAGCA--TCCAATA-TTGCATAAATGTATGTTGTATATATGTAT-AA-ATACAA-CTGATCCTAA--AATTG-ATTTAAA-TGATGACTGTAAAGTCATCAATTTGT-GT-GT-TAT-ATGTG-ANAAAATGC-ACGAAAA--ACAC-A-TTTT--TATGA-TTTGTG-GGG-GTTAT-TA-CGTTGGC-CAAT------GGTAA-CCGTT--A-CC-C-AA-AT-TTCAGTACATGAT--TA-TAAT-CTTTCGAC-AT-TTTTC--CTTTCAGAATA-TA-T-ATGGGTTA-CATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTTATT-TGAGAAATTTTG-TC--AT-TAA-GTTTT-CAAGG-AAAACTTG-AAATTTTCC-GGTAGTTAAAGGGTTAA
Reference ( family-4184 ) : GTCAGAATNTGAAA---ATACAT-----TTA-T--A-TAT-T-GTGACTTTTTCCCCTG-GACT-TCCTAT-GCGTGACTTTT-T-CCCTTTG-AACT-TTC-TTGTCTACATCCTAAGA-AAATTAGA-TCA---TTACTGAAACCTGTAT-ACATAT-TGCA--CA-TAGTT-T------AT------T-------GG-A-CAGTTT----CCCC---TTTCA-T-GG--G-AAGAAA-------AGG-CTGA-AATAGTT-T-AGAAG-GAAATTGA-T-GTAATTAT-TA-------TGTTGCCTACG-AC-AAACAT------A----A--TAT--G--T-TTATAC-T-ACAT-TCT-AATTNTAAACAC--TTTTTTATTCTTAAT-AT--TT--AGA-AAACTTAAGGAT-AA--GTG-AT-TCACTTA-GTTGTCAA-TGGTAATTATAAAA--ATTAAAGTA------AT-TTAA--AACT-TTT----A---AA---CCCTTTTTGAATACTTATAGAC-CA--TTGTA-----TGAAAA-TGTACCATGGAGA--A-TGTT--TCAANTC--T-AT-T-T--A-A---TC---TTTTTTCA-AGGAAAA--AAA--GAAA----------A-G-AA--AATGTA--ATG-ACA-----GT-----AAAG-TATAACATG-CGCAT-CT-TAG-TACTTCAAAGTATG---TGTAT-NTATATTGTA-A---------------------ATAGCA--TCCAATA-TTGCATAAATGTATGTTGTATATATGTAT-AA-ATACAA-CTGATCCTAA--AATTG-ATTTAAA-TGATGACTGTAAAGTCATCAATTTGT-GT-GT-TAT-ATGTG-ANAAAATGC-ACGAAAA--ACAC-A-TTTT--TATGA-TTTGTG-GGG-GTTAT-TA-CGTTGGC-CAAT------GGTAA-CCGTT--A-CC-C-AA-AT-TTCAGTACATGAT--TA-TAAT-CTTTCGAC-AT-TTTTC--CTTTCAGAATA-TA-T-ATGGGTTA-CATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTTATT-TGAGAAATTTTG-TC--AT-TAA-GTTTT-CAAGG-AAAACTTG-AAATTTTCC-GGTAGTTAAAGGGTTAA
gi|1 : GTCAGAATATGAAA---A-ACATGCAAGTTAAT--AGTAT-T-GTGACTTTTTTCCCTGAGACT-TCCTAT-GCGTGACTTTTGT-TCCTTTG-AACT-TTC-TT-TCT-CATCCGAAGA-ACATTAGA-TCA---TTACTGAAACCTGTAT-ACATATCTGC---CA-TAGTT-T------AT------TAAATATTGG-A-CAGTTTTTCCCCCT---TTTCA-T-GG--GGAAGAAA-------AGG-CTGA-AAT-GTT-T-AGAAG-GAA-TTGA-TTGCAATTAT-TA-------TGTTGCCT-CG-AC-AAACAT------A----C--CAT--GGTT-TTATAC-TGACAT-TCT-AATTCTAAGCAC--TTTTTTATT-TTATTCAT--TT--AGA-AA-CTTAAGGAT-AAA-GTG-AT-TCACTTA-GTTGTCA--TGGTAATTATAAA-----TAAAGT--------TCTTCA--AACT-TTTTAT-A---AA---CCTTTTTTGAATACTT-TAGAC-CA--TTGTA-----T-AAAG-TACGCTA-GGAGA--AATGTT--TCAA-TC--T-AT-T-TT-A-AGTCTC---TTTTTTCA-AGAAAAAGGAAA--GAAAATGTAATGACA-GTAA--AGTATACCATGCACATCTTAGTGCTTCAAAG-TA--ATA-G-TGTAT-TA-TATCTATCT-ATATTATACATTATAT-ATATATTGTATA---------------------ATAGCAATTCCA-TA-TTGCATAAA--------G---ATGTGTAT-AACATACAA-CTGATCCTAA--AAT-G-ATTTAA--TGATGATTGTAAAGTCATCAATTTGTTGT-GT-TAT-GTG-G-ACAAAA-GC-ACGAAAA--ACAC-A-TTTTCTTATGAATTTGTG-GGG-TTTTA-TA-CGTTG-C-CA-T------GGTAA-CCGTT--A-CC-C-AA-ATATTCAGTACATTAT--TA-TAAT---TTCAA---T-TTTTT--CTT--AGAATA-TA-T-ATGGGTTAACATT----ATAAAAATAT-TACTAGAAAACATG--CTTATTTTTTATT-TG-GAAATTTTG-TC--AT-TAG-TTTTT-CAAGA-AAA
gi|10 : aaatgtacaatttttttagtggacattctttcgctatgtactGGTCCTAATGAATT--ATTAGAACTG--GAGTGTAAAGTCATCAGTT-GT-GT-GTCTAT-ATGT--ACAAAATCCTACGAACA--ACAC-C-ATTT--TATGA-TTTGTG-GG---TTAT-TAGCGTTG-C-CAAT------GGTAA-CCGTTTCG-CCGC-AA-AT-TTCAGTACATA----TA-TA---CTCTC-AC-AT-GTTTC--CTTTCA-AATACTAGT-ATGG-TTA-CATT----ATAAAAATAT-TACTAATAA--ATG-CCTTA-TTTTTATT-TTTGAAATTTTG-TCAAAT-T-A-GTTTT-CCAGGAAAAACTTG-AAATTTTCT-GGTA-TTAAAGGGTTAA
gi|11 : ctgAAAATTACATGA-TTGT--GATGA-TTT-TG-GGGAGGTATATA--ATTAGCGTAATCCATTAGGTAAACCATTT-A-C----AA-AT-TTCAGTACATGAT--TG-TAAT-CTT-CGAC-AT-TTTTC--CTTTCAGAATA-TA-T-ATGGGTTA-CATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTTATT-TGAAATGTTCTG-ca
gi|12 : gcACATGATGGTAGTAAT-CTT-CAAC-AT-TTT-CGGCTTTCCGAATA-TA-TCATGGGTTA-CATTTATCACAAGAATATATACTAGAAA--ATG-CCTTATTTTTTATTGTGAGCATTGTTGTTC--ATGTAGTGTTTTGTAAGG--ACACTTG-AAATTTTTC-TGTAGTTAAAGGGTgtagttaaagggttaaatctcgcacacaaagaatt
gi|13 : TGTATGTTGTATATATGTAT-AA-ATACAA-CTGATCCTAA--AATTT-ATTTAAA-TGATGACTGTAAAGTCATCAATTTGT-GT-GT-TAT-ATGTG-AAATAATGC-ACGAAAA--ACAC-aacagtggtagtcaaaagagctgatataaaacgactcatcgccaaa
gi|14 : ccaaatttgaattttaaaatatT-T------AT------T-------GG-A-CAGTTT----CCCCCTATTTCA-T-GG--A-AAGAAA-------AGG-TTGA-AGTAGTT-TTAGAAG-GAA-CTGA-T-GTAATTAT-TA-------TGTTGCAT-TG-AC-AAACATAG----A----A--TAT--G--T-TTATAC-T-ACAT-TCT-AATTATAA
gi|2 : GTCAGAATTTGAAA---ATA-AT-----TTA-T--A-TAT-T-GTGACTTTTTCCCCTGTGACT-TCCTAT-GCGTGA--TTT-T-CCCTTTG-AACTATCC-TGGCCTACATCCTAAGA-AA-TTACA-TCAATTTTACTTGAACCTGTAT-ACATAT-TGCA--CA-TAGTT-T------AT------T-------G--A-CAGTTT----TCCT---TTTCAAT-GG--G-AAGAAA-------AGG-TTGA-AATTGTT-T-AGAAG-GAAATTGA-T-GTAATTAT-TAACTAGTATGTTGCCCACG-AC-AAACAT------A-------TAT--G--T-TTATAC-T-AGAT-TCT-AATTATAAGCAC--TTTTT-ATTCATAAT-AT--TT--AGA-AAAATTAAGGGT-AAT-GTG-AT-TCATTTAAGTTGCCAA-TGGTAATTAATAAA--ATTAAGGTACTGAGTAT-TTAA--AA-T-TTT----A---AAAAACCCCTTTTGA-TACTTGTAGACTCAATTTGTA-----TGAAAA-TTTACC-TGGAGA--A-TGTT--TCAAGTCCCT-AT-T-T--A-A---TT---TTATTTCA-AGGAAAA--AAA--GAAA----------ATA-AA--AATG-A--ATG-ACA-----AT-----AAAT-TATAATAT--CGCA--CT-TAG-TACTTCAAAGTATG---TGTAT-CTATA-TATA-T---------------------ATAGCG--TCCAAAA-TTG-ATAAATGTATG-TGTATATATGCATAAA-ATACAA-CTGATCCTAA--AATT--ATTTGAA-TGATGACTGTAAAGTCATCAATTTGT-GT-GT-TAT-ATGTG-AAAAAATGC-G-AAAAA--ACAC-A-TTTT--TATGA-TTTGTG-GGG-GTTAT-TA-CGTTGGC-CAAT------GGTAA-CCGTT--A-CCGCAAA-AT-TTCAGTACATTAT--TA-TAATCCTTTCGACAAA-TTTTC--CTTTTAGAATA-TA-T-ATGGGTTA-CATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTTATT-TGAAAAATTTTG-TC--AT-TAA-GGTTT-CAAGG-AAAACTTGAAAATTTTTC--GTAGTTAAAGGATTAAg
gi|3 : AT-GCAAAT-TGCA--CA-TAATT-T------AT------T-------GG-A-CAGTTT----TCCCCTATTTCA-T-CG--G-AAGAAA--------GG-TTGA-AATAGTT-TTAGGAG-GGA-TTGA-T-ATAATTAT-TT-------TGTTGCC-ACG-GT-AAACAT------ATAAAA--TAT--G--T-TTAGAC-T-ACAT-TCT-ACTTCTAAACAC--TTTGT-ATTTTTTAT-CC--TTTCAGA-ATAT------AT-AA--G---AT-TTATTTC-GTTGTCA--TGGTAAATATAAAACAATTAA-GTA------AT-GTCATGAATT-TTTTTTTA---AA---C---TTTTGAATACTTATAGAT-CA--TTGTG-----TGAAAA-TGTACC-TGGAAAATA-TGTT--TCAATTC--TAAT-T-C--A-A---TCTTTTTTTTTCA-AGGAAAA--AAG--G--A----------A-G-AA--AATGTA--ATG-ACA-----GT-----AAAG-TA-AA-ATG-CGCA--CT-TTG-TACTTCAATGTATG---TGTAT-ATATATTGTA-A---------------------ATAACA--TCCAATA-TTGCATAAATATATGTTGTATATATGTAT-AA-ATACAA-TTGATCCTAA--AATTG-ATTTAAA-TGATGACTGTAAAGTAATCAATTCGT-GT-TT-TAT-ATGTG-AAAAAATGC-ACGAAAA--ACAC-A-TTTT--TATCA-TTTGT--GGG-GTTAT-TA-CGTT-GC-C-AT------GGTAA-CCGTT--ACCC-C-AA-AT-TTCATTACATGAT--TA-TAAT-C-TTCGAC-AT-TTTTC--CTTTCAGAATA-TA-T-TTGGGTTA-CATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTCATT-TGAAAA--TTTG-TC--AT-T-A-GTTTT-GAAGG-AAAACTTT-AAATTTTCT-GGTAGTTAAAGGGTTAA
gi|4 : tgGTCATAATATGAAA---ATACAT-----GCA-TTAA-TATAT-GTGACTTTTCCCCGTG--ACT-TCTCATAGCGTGACTTTT-T-CCCTTTG--ACT-TTCTTTGTCTACATCCTAAGATAAACTAGACTCA---TTACTGAAACCTGTATCACATAT-TGCATTCA-TAGTT-TGGTTAAAA------T-------GG-A-CAGTTT----CCCC---TATCA-TAGG--G-AAGAAAAAGACACAGG-CTAG-AATAGTT----GAAGAGAAGGTGA-T-GTAATTATGTA-------T-TTCCCT-CG-AC-AAACTT------AAC--A--TAC--G--TGTTATATAT-ACATATCT-AATTGCAAACACTGTTTTTTA-TCTTACT-AT--TT--AGA-AAACTTAAGGATCAAACGTGCATGTCAC-TA-GTTGTCCATTGGGAATTATGAAA--AATAAAGGA------TC-TTAA--AACT-TTT----A---A------CCTTTTAAATACTTATA-AC-CA--TTGTATAGTCTGAAAATTGTACCAAGGAGA--A---TT--TCACATA--T-ATAT-T--A-A---TC-----TTTTCA-AG--AAA--AAA--GAAA----------GTG-AATGAGAGTAGGAAG-ACA-----G------AAGGTTATAACATG-CGCGCACTGTAG-T-----GGAGGGTG---TGCATCGTGTAAAGTA-C---------------------TTA--A--TCTAATA-TCG----AGTATATATTTTA
gi|5 : gtaccatacagtttgactttttacatgccattcttctattagtactAT-TA-------TGTCGCC-ACG-GC-AAACAT------A----AAATAT--G--T-TTATAC-T-ACAT-TCT-AATTCTATACAC--TTCGT-ACTCTTA-T-AT--TT--AGA-AAACT---------A--G-G-AT-TCGTTTA-GTTGCCA--TGGTCATTATAAAA--TTTAAAGTA------AT-TTAA--A-CT-TTT----TTTTAA---CCTTTTTT-AATACTTATAGAC-CA--TTGTA-----TGAAAA-TATACCATTTA-A--A-TGTT--TCGATTT--T-AT-T-TTGA-T---TT---TTTTTTCA-AGGAAAA--AAATTG---------------G-AA--AATCTA--TTG-ACA-----GTGA---AAAG-TATAGCATG-CGCA--CT-TA--TCCTTCAAATCATG---TGTTT-GTGTGTTGTA-A---------------------ATAACA--TTCAATA-CTATAGAAATATATGTTGTATATTTGTAT-AA-ATATAA-GTGGTCCTAA----TTCTATTTAAT-TGATGACATTAAATTCATCAATTTGT-GT-GT-TTT-ATGTGGAAAAAATAC-ACGAAAA--ACAC-A-TTTT--TATGA-TTTGT--GGG-GTTAT-GT-TGTTGGC---AT------GGTAA-CCGAT--A-CC-C-CATAT-TTCAGTACATGAT--TA-ACAT-C-TTCAAC-ATGTTTCC--CTTT-----TA-TA-T-ATAGGTTA-CATT----ATAAGAATAT-TACTAGAAA--ATG-CCGTATTTTTCATT-T--TAAATTTTG-TC--AT-T-A-GTTTT-GAAGG-AAAACTTG-ATTTTTTTTAAGTAGTTAATGGGTTAAatttattgtggagttccaatagtgcctataccgcctattggtttatatagt
gi|6 : aGTCAGAATTTGAAATACATGCAT-----TTA----A-TAT---ATG-----------TA-GACT-TCCTAT-GCGTGACTTTT-TTCCCTTTG-A-CT-TTT-TT---TACATTCTAAGA-AA-TTAGA-TCA---TTACTGAAACCTGTAT-ACATAT-TGCA--CA-TAGTT-T------ATTAAATAT-------GG-ACCAGTTC----CCTA---TTTCA-T-GG--G-AAG--A-------AGG-CTGA-AATAGTT-T-TGAAG-AAGATTGA-T-GTA--TAT-TA-------TGTTGCCT-CG-A--AAACAT------A----A--CATAGG--T-TTATAC-T-ACAT-TCT-AATTCTAAACAC---TTTTTATTCT--AT-TT--TT--AGA-AAATCTAAGGAT-AA--GTG-AG-TCACTTA-GTTGTCCA-TGGTAATTATGAAA--ATATAAGTA------AT-TTAA--AAGTGTTT----A---AA----CCTTTTTGAATACTTATAAAC-CA--TTGTA-----TGAAAA-TGTAa
gi|7 : gactgtttttacagtgacattctttcctattagtact--A-TAT-TAGTGACTTTTTCCCTT---ACTATCCTAT-GTGTGACTTTT-T-CCCTGCGAAACT-TTC-T--TC--CACCCTTAGA-AAATTACA-TCA---T------AAC----AT-ATATTC-TGCA--CACTATTTCT------AT------T-------GGTA-CAAGTC----CCCCTA-TTTCA-T-GGAAA-AAGAAA-------AGGTTTGATAGTATTTAT-AGAAG---AACTGACT-GTAA-TA--TA-------TGTTGCA-ATGCACAAAACATAGTAGGA----A--TAT--G--T-ATATAC----CAT-TCTCAATTAT-AACAC--TTTTTTATTATCAAG-ATGATC--TGATAAAATCCAGGAC-AA--GTA-A
gi|8 : tttcgtcgcacccaactccaatggaagagtgctactaatatcaaaccatttaattataatcGTA-A---------------------ATAGCA--TC-AATA-TTGCATAAATGTATGT-GTGTATATGTAT-AA-ATACAAACTGATCCTAA--AATTG-ATTTAAA--GATGATTG--AAGTCATCATTTTGT-GTTGTATATTATGTG-ACAACATGC-ACGAAAA---CAC-AATTTT--TATGA-TTTGTG-GGG--TTAT-TA-C-TTGCC-TG--------GGTAA-CCGTT--A-CC-C-AA-AT-TTCAGTA-ATGAT--TA-TAAT-CTT-CAA--AT-TTTTC--CTT-CAGAATA-TA-T-ATGGGTTA-CAT-----ATATAAATAT-TACTAGAAA--ATGACCTTATTTTT-ATT-TGAT---TTTTG-TC--AT-TA--GTTTT-CAAGG-AAAACTTG-CAGTTTTCC-GGTAGTTAAAGGGTTAAataagttcgagtt
gi|9 : AGAC-----TTGTAC----TGCAAA-TGTACCA-GGAGA--A-TGTTCATCAAATC--T-AT-TCT--ATA---TC---GTTTTTCATAGGAAAA--AAA---AAA----------G-G-AA--AATGTA--ATG-ACA-----GT------AAG-TATAACAAGCCGCTT-CT-TAG-TACTTCAAAGTATG---TGTAT-CTATATC-TA-ATATATTTTATATATACTATGTATAGCA--TCC-ATATTTGCATAA--GTATGCTCTATA-ATG-AT-AA-ATACAA-CTGA--CCAA--AATTG-ATT--AA-TGATGA-TGT-AGGTCATC-ATTTG--GT-G--TAT-ATGTG-ACAAAATGC-ACG---A--ACAC-A---TT--TATGA--TTGTGTTGG-GTTAT-TA-CGT--GC-C-AT------GGTAA--CGAT--A-CC-acgtaataaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTTCTAGTTGTTAAATAGCAGTGGTAGCCAAAACAGTGATATTAAGACTTATCCCAA
Unaligned ( gi|16 ): TTTTACAGTGACTTCTTTCCTAATTAGTACTGTCAGAATTTGAA
Alignments
lowQualScore : 111 333333333333 111 222 222222 1 111 2222222222222222222222 1111 222 1111111 111 1 1111111 22 33333333333333 1 11 22 111111 333333333333333 22222 11 2222222222222222 555555555555555555 11 333333333333 22 111 55555555555555555555555 11 1 22222222222 11 1 1111 222 11
lowQualScore : 1 777 3 2 222222222222 8 666 0 3 444 8 8 8 8 999 8 8 000000 8 0 8 444 0 6 6 99 6 5 8888888888888888888888 5 5 2222 777 5 5 8888 8888888 5 5 1 555 5 4 5 5 1 5 6666666 66 5 5 66666666666666 66 66 5 777 5 5 1 77 2 0 3 0 5 5 77 77 5 6666 5 99 666 6 6 22 0 99 1 999999 6 99 5 6 999999999999999 1 1 5 77 00000 5 99 1 99 6 99 7 99 6 6 1111111111111111 6 1 99 111111111111111111 6 99 88 6 444444444444 6 7 3 888 44 6 99 3 2 111 77 3 22222222222222222222222 1 77 5 6 00 22 0 5 5 5 66 33 0 55 3 0 5 5 0 5 5 1 5 66 4 55 66 5 77 77 5 5 77 55555555555 5 11 5 0 5 5 5 66 5 99999 4 77 5 66 44 5 5 5 5 0000 5 66 5 0 5 88888 5 77 5 000 5 5 6 11
lowQualScore : . ... . . ............ . ... . . ... . . . . ... . . ...... . . . ... . . . .. . . ...................... . . .... ... . . .... ....... . . . ... . . . . . . ....... .. . . .............. .. .. . ... . . . .. . . . . . . .. .. . .... . .. ... . . .. . .. . ...... . .. . . ............... . . . .. ..... . .. . .. . .. . .. . . ................ . . .. .................. . .. .. . ............ . . . ... .. . .. . . ... .. . ....................... . .. . . .. .. . . . . .. .. . .. . . . . . . . . . .. . .. .. . .. .. . . .. ........... . .. . . . . . .. . ..... . .. . .. .. . . . . .... . .. . . . ..... . .. . ... . . . ..
lowQualScore : 0 555 2 5 000000000000 0 888 8 2 222 0 0 0 0 666 0 0 888888 0 6 0 000 8 7 7 22 7 7 1111111111111111111111 7 7 1111 999 7 7 1111 6666666 7 7 7 111 7 1 7 7 4 0 2222222 88 0 0 88888888888888 99 99 0 111 0 0 0 99 0 1 0 1 1 7 99 99 7 7777 7 33 666 7 7 22 3 22 7 222222 7 22 2 7 777777777777777 0 7 7 99 00000 7 00 0 22 7 22 5 22 7 7 8888888888888888 7 0 22 333333333333333333 7 22 33 7 333333333333 7 3 7 555 77 7 22 2 5 777 77 5 44444444444444444444444 7 99 7 6 33 11 1 7 7 7 99 88 4 44 4 1 0 0 0 0 0 0 0 11 4 44 99 0 55 55 0 0 00 00000000000 0 99 0 0 7 7 7 99 0 88888 2 55 0 99 66 0 0 0 0 6666 0 99 0 9 0 22222 0 99 7 000 7 7 7 88
consensus : GTCAGAATNTGAAA---ATACAT-----TTA-T--A-TAT-T-GTGACTTTTTCCCCTG-GACT-TCCTAT-GCGTGACTTTT-T-CCCTTTG-AACT-TTC-TTGTCTACATCCTAAGA-AAATTAGA-TCA---TTACTGAAACCTGTAT-ACATAT-TGCA--CA-TAGTT-T------AT------T-------GG-A-CAGTTT----CCCC---TTTCA-T-GG--G-AAGAAA-------AGG-CTGA-AATAGTT-T-AGAAG-GAAATTGA-T-GTAATTAT-TA-------TGTTGCCTACG-AC-AAACAT------A----A--TAT--G--T-TTATAC-T-ACAT-TCT-AATTNTAAACAC--TTTTTTATTCTTAAT-AT--TT--AGA-AAACTTAAGGAT-AA--GTG-AT-TCACTTA-GTTGTCAA-TGGTAATTATAAAA--ATTAAAGTA------AT-TTAA--AACT-TTT----A---AA---CCCTTTTTGAATACTTATAGAC-CA--TTGTA-----TGAAAA-TGTACCATGGAGA--A-TGTT--TCAANTC--T-AT-T-T--A-A---TC---TTTTTTCA-AGGAAAA--AAA--GAAA----------A-G-AA--AATGTA--ATG-ACA-----GT-----AAAG-TATAACATG-CGCAT-CT-TAG-TACTTCAAAGTATG---TGTAT-NTATATTGTA-A---------------------ATAGCA--TCCAATA-TTGCATAAATGTATGTTGTATATATGTAT-AA-ATACAA-CTGATCCTAA--AATTG-ATTTAAA-TGATGACTGTAAAGTCATCAATTTGT-GT-GT-TAT-ATGTG-ANAAAATGC-ACGAAAA--ACAC-A-TTTT--TATGA-TTTGTG-GGG-GTTAT-TA-CGTTGGC-CAAT------GGTAA-CCGTT--A-CC-C-AA-AT-TTCAGTACATGAT--TA-TAAT-CTTTCGAC-AT-TTTTC--CTTTCAGAATA-TA-T-ATGGGTTA-CATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTTATT-TGAGAAATTTTG-TC--AT-TAA-GTTTT-CAAGG-AAAACTTG-AAATTTTCC-GGTAGTTAAAGGGTTAA
Reference ( family-4184 ) : GTCAGAATNTGAAA---ATACAT-----TTA-T--A-TAT-T-GTGACTTTTTCCCCTG-GACT-TCCTAT-GCGTGACTTTT-T-CCCTTTG-AACT-TTC-TTGTCTACATCCTAAGA-AAATTAGA-TCA---TTACTGAAACCTGTAT-ACATAT-TGCA--CA-TAGTT-T------AT------T-------GG-A-CAGTTT----CCCC---TTTCA-T-GG--G-AAGAAA-------AGG-CTGA-AATAGTT-T-AGAAG-GAAATTGA-T-GTAATTAT-TA-------TGTTGCCTACG-AC-AAACAT------A----A--TAT--G--T-TTATAC-T-ACAT-TCT-AATTNTAAACAC--TTTTTTATTCTTAAT-AT--TT--AGA-AAACTTAAGGAT-AA--GTG-AT-TCACTTA-GTTGTCAA-TGGTAATTATAAAA--ATTAAAGTA------AT-TTAA--AACT-TTT----A---AA---CCCTTTTTGAATACTTATAGAC-CA--TTGTA-----TGAAAA-TGTACCATGGAGA--A-TGTT--TCAANTC--T-AT-T-T--A-A---TC---TTTTTTCA-AGGAAAA--AAA--GAAA----------A-G-AA--AATGTA--ATG-ACA-----GT-----AAAG-TATAACATG-CGCAT-CT-TAG-TACTTCAAAGTATG---TGTAT-NTATATTGTA-A---------------------ATAGCA--TCCAATA-TTGCATAAATGTATGTTGTATATATGTAT-AA-ATACAA-CTGATCCTAA--AATTG-ATTTAAA-TGATGACTGTAAAGTCATCAATTTGT-GT-GT-TAT-ATGTG-ANAAAATGC-ACGAAAA--ACAC-A-TTTT--TATGA-TTTGTG-GGG-GTTAT-TA-CGTTGGC-CAAT------GGTAA-CCGTT--A-CC-C-AA-AT-TTCAGTACATGAT--TA-TAAT-CTTTCGAC-AT-TTTTC--CTTTCAGAATA-TA-T-ATGGGTTA-CATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTTATT-TGAGAAATTTTG-TC--AT-TAA-GTTTT-CAAGG-AAAACTTG-AAATTTTCC-GGTAGTTAAAGGGTTAA
gi|1 : GTCAGAATATGAAA---A-ACATGCAAGTTAAT--AGTAT-T-GTGACTTTTTTCCCTGAGACT-TCCTAT-GCGTGACTTTTGT-TCCTTTG-AACT-TTC-TT-TCT-CATCCGAAGA-ACATTAGA-TCA---TTACTGAAACCTGTAT-ACATATCTGC---CA-TAGTT-T------AT------TAAATATTGG-A-CAGTTTTTCCCCCT---TTTCA-T-GG--GGAAGAAA-------AGG-CTGA-AAT-GTT-T-AGAAG-GAA-TTGA-TTGCAATTAT-TA-------TGTTGCCT-CG-AC-AAACAT------A----C--CAT--GGTT-TTATAC-TGACAT-TCT-AATTCTAAGCAC--TTTTTTATT-TTATTCAT--TT--AGA-AA-CTTAAGGAT-AAA-GTG-AT-TCACTTA-GTTGTCA--TGGTAATTATAAA-----TAAAGT--------TCTTCA--AACT-TTTTAT-A---AA---CCTTTTTTGAATACTT-TAGAC-CA--TTGTA-----T-AAAG-TACGCTA-GGAGA--AATGTT--TCAA-TC--T-AT-T-TT-A-AGTCTC---TTTTTTCA-AGAAAAAGGAAA--GAAAATGTAATGACA-GTAA--AGTATACCATGCACATCTTAGTGCTTCAAAG-TA--ATA-G-TGTAT-TA-TATCTATCT-ATATTATACATTATAT-ATATATTGTATA---------------------ATAGCAATTCCA-TA-TTGCATAAA--------G---ATGTGTAT-AACATACAA-CTGATCCTAA--AAT-G-ATTTAA--TGATGATTGTAAAGTCATCAATTTGTTGT-GT-TAT-GTG-G-ACAAAA-GC-ACGAAAA--ACAC-A-TTTTCTTATGAATTTGTG-GGG-TTTTA-TA-CGTTG-C-CA-T------GGTAA-CCGTT--A-CC-C-AA-ATATTCAGTACATTAT--TA-TAAT---TTCAA---T-TTTTT--CTT--AGAATA-TA-T-ATGGGTTAACATT----ATAAAAATAT-TACTAGAAAACATG--CTTATTTTTTATT-TG-GAAATTTTG-TC--AT-TAG-TTTTT-CAAGA-AAA
gi|10 : aaatgtacaatttttttagtggacattctttcgctatgtactGGTCCTAATGAATT--ATTAGAACTG--GAGTGTAAAGTCATCAGTT-GT-GT-GTCTAT-ATGT--ACAAAATCCTACGAACA--ACAC-C-ATTT--TATGA-TTTGTG-GG---TTAT-TAGCGTTG-C-CAAT------GGTAA-CCGTTTCG-CCGC-AA-AT-TTCAGTACATA----TA-TA---CTCTC-AC-AT-GTTTC--CTTTCA-AATACTAGT-ATGG-TTA-CATT----ATAAAAATAT-TACTAATAA--ATG-CCTTA-TTTTTATT-TTTGAAATTTTG-TCAAAT-T-A-GTTTT-CCAGGAAAAACTTG-AAATTTTCT-GGTA-TTAAAGGGTTAA
gi|11 : ctgAAAATTACATGA-TTGT--GATGA-TTT-TG-GGGAGGTATATA--ATTAGCGTAATCCATTAGGTAAACCATTT-A-C----AA-AT-TTCAGTACATGAT--TG-TAAT-CTT-CGAC-AT-TTTTC--CTTTCAGAATA-TA-T-ATGGGTTA-CATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTTATT-TGAAATGTTCTG-ca
gi|12 : gcACATGATGGTAGTAAT-CTT-CAAC-AT-TTT-CGGCTTTCCGAATA-TA-TCATGGGTTA-CATTTATCACAAGAATATATACTAGAAA--ATG-CCTTATTTTTTATTGTGAGCATTGTTGTTC--ATGTAGTGTTTTGTAAGG--ACACTTG-AAATTTTTC-TGTAGTTAAAGGGTgtagttaaagggttaaatctcgcacacaaagaatt
gi|13 : TGTATGTTGTATATATGTAT-AA-ATACAA-CTGATCCTAA--AATTT-ATTTAAA-TGATGACTGTAAAGTCATCAATTTGT-GT-GT-TAT-ATGTG-AAATAATGC-ACGAAAA--ACAC-aacagtggtagtcaaaagagctgatataaaacgactcatcgccaaa
gi|14 : ccaaatttgaattttaaaatatT-T------AT------T-------GG-A-CAGTTT----CCCCCTATTTCA-T-GG--A-AAGAAA-------AGG-TTGA-AGTAGTT-TTAGAAG-GAA-CTGA-T-GTAATTAT-TA-------TGTTGCAT-TG-AC-AAACATAG----A----A--TAT--G--T-TTATAC-T-ACAT-TCT-AATTATAA
gi|2 : GTCAGAATTTGAAA---ATA-AT-----TTA-T--A-TAT-T-GTGACTTTTTCCCCTGTGACT-TCCTAT-GCGTGA--TTT-T-CCCTTTG-AACTATCC-TGGCCTACATCCTAAGA-AA-TTACA-TCAATTTTACTTGAACCTGTAT-ACATAT-TGCA--CA-TAGTT-T------AT------T-------G--A-CAGTTT----TCCT---TTTCAAT-GG--G-AAGAAA-------AGG-TTGA-AATTGTT-T-AGAAG-GAAATTGA-T-GTAATTAT-TAACTAGTATGTTGCCCACG-AC-AAACAT------A-------TAT--G--T-TTATAC-T-AGAT-TCT-AATTATAAGCAC--TTTTT-ATTCATAAT-AT--TT--AGA-AAAATTAAGGGT-AAT-GTG-AT-TCATTTAAGTTGCCAA-TGGTAATTAATAAA--ATTAAGGTACTGAGTAT-TTAA--AA-T-TTT----A---AAAAACCCCTTTTGA-TACTTGTAGACTCAATTTGTA-----TGAAAA-TTTACC-TGGAGA--A-TGTT--TCAAGTCCCT-AT-T-T--A-A---TT---TTATTTCA-AGGAAAA--AAA--GAAA----------ATA-AA--AATG-A--ATG-ACA-----AT-----AAAT-TATAATAT--CGCA--CT-TAG-TACTTCAAAGTATG---TGTAT-CTATA-TATA-T---------------------ATAGCG--TCCAAAA-TTG-ATAAATGTATG-TGTATATATGCATAAA-ATACAA-CTGATCCTAA--AATT--ATTTGAA-TGATGACTGTAAAGTCATCAATTTGT-GT-GT-TAT-ATGTG-AAAAAATGC-G-AAAAA--ACAC-A-TTTT--TATGA-TTTGTG-GGG-GTTAT-TA-CGTTGGC-CAAT------GGTAA-CCGTT--A-CCGCAAA-AT-TTCAGTACATTAT--TA-TAATCCTTTCGACAAA-TTTTC--CTTTTAGAATA-TA-T-ATGGGTTA-CATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTTATT-TGAAAAATTTTG-TC--AT-TAA-GGTTT-CAAGG-AAAACTTGAAAATTTTTC--GTAGTTAAAGGATTAAg
gi|3 : AT-GCAAAT-TGCA--CA-TAATT-T------AT------T-------GG-A-CAGTTT----TCCCCTATTTCA-T-CG--G-AAGAAA--------GG-TTGA-AATAGTT-TTAGGAG-GGA-TTGA-T-ATAATTAT-TT-------TGTTGCC-ACG-GT-AAACAT------ATAAAA--TAT--G--T-TTAGAC-T-ACAT-TCT-ACTTCTAAACAC--TTTGT-ATTTTTTAT-CC--TTTCAGA-ATAT------AT-AA--G---AT-TTATTTC-GTTGTCA--TGGTAAATATAAAACAATTAA-GTA------AT-GTCATGAATT-TTTTTTTA---AA---C---TTTTGAATACTTATAGAT-CA--TTGTG-----TGAAAA-TGTACC-TGGAAAATA-TGTT--TCAATTC--TAAT-T-C--A-A---TCTTTTTTTTTCA-AGGAAAA--AAG--G--A----------A-G-AA--AATGTA--ATG-ACA-----GT-----AAAG-TA-AA-ATG-CGCA--CT-TTG-TACTTCAATGTATG---TGTAT-ATATATTGTA-A---------------------ATAACA--TCCAATA-TTGCATAAATATATGTTGTATATATGTAT-AA-ATACAA-TTGATCCTAA--AATTG-ATTTAAA-TGATGACTGTAAAGTAATCAATTCGT-GT-TT-TAT-ATGTG-AAAAAATGC-ACGAAAA--ACAC-A-TTTT--TATCA-TTTGT--GGG-GTTAT-TA-CGTT-GC-C-AT------GGTAA-CCGTT--ACCC-C-AA-AT-TTCATTACATGAT--TA-TAAT-C-TTCGAC-AT-TTTTC--CTTTCAGAATA-TA-T-TTGGGTTA-CATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTCATT-TGAAAA--TTTG-TC--AT-T-A-GTTTT-GAAGG-AAAACTTT-AAATTTTCT-GGTAGTTAAAGGGTTAA
gi|4 : tgGTCATAATATGAAA---ATACAT-----GCA-TTAA-TATAT-GTGACTTTTCCCCGTG--ACT-TCTCATAGCGTGACTTTT-T-CCCTTTG--ACT-TTCTTTGTCTACATCCTAAGATAAACTAGACTCA---TTACTGAAACCTGTATCACATAT-TGCATTCA-TAGTT-TGGTTAAAA------T-------GG-A-CAGTTT----CCCC---TATCA-TAGG--G-AAGAAAAAGACACAGG-CTAG-AATAGTT----GAAGAGAAGGTGA-T-GTAATTATGTA-------T-TTCCCT-CG-AC-AAACTT------AAC--A--TAC--G--TGTTATATAT-ACATATCT-AATTGCAAACACTGTTTTTTA-TCTTACT-AT--TT--AGA-AAACTTAAGGATCAAACGTGCATGTCAC-TA-GTTGTCCATTGGGAATTATGAAA--AATAAAGGA------TC-TTAA--AACT-TTT----A---A------CCTTTTAAATACTTATA-AC-CA--TTGTATAGTCTGAAAATTGTACCAAGGAGA--A---TT--TCACATA--T-ATAT-T--A-A---TC-----TTTTCA-AG--AAA--AAA--GAAA----------GTG-AATGAGAGTAGGAAG-ACA-----G------AAGGTTATAACATG-CGCGCACTGTAG-T-----GGAGGGTG---TGCATCGTGTAAAGTA-C---------------------TTA--A--TCTAATA-TCG----AGTATATATTTTA
gi|5 : gtaccatacagtttgactttttacatgccattcttctattagtactAT-TA-------TGTCGCC-ACG-GC-AAACAT------A----AAATAT--G--T-TTATAC-T-ACAT-TCT-AATTCTATACAC--TTCGT-ACTCTTA-T-AT--TT--AGA-AAACT---------A--G-G-AT-TCGTTTA-GTTGCCA--TGGTCATTATAAAA--TTTAAAGTA------AT-TTAA--A-CT-TTT----TTTTAA---CCTTTTTT-AATACTTATAGAC-CA--TTGTA-----TGAAAA-TATACCATTTA-A--A-TGTT--TCGATTT--T-AT-T-TTGA-T---TT---TTTTTTCA-AGGAAAA--AAATTG---------------G-AA--AATCTA--TTG-ACA-----GTGA---AAAG-TATAGCATG-CGCA--CT-TA--TCCTTCAAATCATG---TGTTT-GTGTGTTGTA-A---------------------ATAACA--TTCAATA-CTATAGAAATATATGTTGTATATTTGTAT-AA-ATATAA-GTGGTCCTAA----TTCTATTTAAT-TGATGACATTAAATTCATCAATTTGT-GT-GT-TTT-ATGTGGAAAAAATAC-ACGAAAA--ACAC-A-TTTT--TATGA-TTTGT--GGG-GTTAT-GT-TGTTGGC---AT------GGTAA-CCGAT--A-CC-C-CATAT-TTCAGTACATGAT--TA-ACAT-C-TTCAAC-ATGTTTCC--CTTT-----TA-TA-T-ATAGGTTA-CATT----ATAAGAATAT-TACTAGAAA--ATG-CCGTATTTTTCATT-T--TAAATTTTG-TC--AT-T-A-GTTTT-GAAGG-AAAACTTG-ATTTTTTTTAAGTAGTTAATGGGTTAAatttattgtggagttccaatagtgcctataccgcctattggtttatatagt
gi|6 : aGTCAGAATTTGAAATACATGCAT-----TTA----A-TAT---ATG-----------TA-GACT-TCCTAT-GCGTGACTTTT-TTCCCTTTG-A-CT-TTT-TT---TACATTCTAAGA-AA-TTAGA-TCA---TTACTGAAACCTGTAT-ACATAT-TGCA--CA-TAGTT-T------ATTAAATAT-------GG-ACCAGTTC----CCTA---TTTCA-T-GG--G-AAG--A-------AGG-CTGA-AATAGTT-T-TGAAG-AAGATTGA-T-GTA--TAT-TA-------TGTTGCCT-CG-A--AAACAT------A----A--CATAGG--T-TTATAC-T-ACAT-TCT-AATTCTAAACAC---TTTTTATTCT--AT-TT--TT--AGA-AAATCTAAGGAT-AA--GTG-AG-TCACTTA-GTTGTCCA-TGGTAATTATGAAA--ATATAAGTA------AT-TTAA--AAGTGTTT----A---AA----CCTTTTTGAATACTTATAAAC-CA--TTGTA-----TGAAAA-TGTAa
gi|7 : gactgtttttacagtgacattctttcctattagtact--A-TAT-TAGTGACTTTTTCCCTT---ACTATCCTAT-GTGTGACTTTT-T-CCCTGCGAAACT-TTC-T--TC--CACCCTTAGA-AAATTACA-TCA---T------AAC----AT-ATATTC-TGCA--CACTATTTCT------AT------T-------GGTA-CAAGTC----CCCCTA-TTTCA-T-GGAAA-AAGAAA-------AGGTTTGATAGTATTTAT-AGAAG---AACTGACT-GTAA-TA--TA-------TGTTGCA-ATGCACAAAACATAGTAGGA----A--TAT--G--T-ATATAC----CAT-TCTCAATTAT-AACAC--TTTTTTATTATCAAG-ATGATC--TGATAAAATCCAGGAC-AA--GTA-A
gi|8 : tttcgtcgcacccaactccaatggaagagtgctactaatatcaaaccatttaattataatcGTA-A---------------------ATAGCA--TC-AATA-TTGCATAAATGTATGT-GTGTATATGTAT-AA-ATACAAACTGATCCTAA--AATTG-ATTTAAA--GATGATTG--AAGTCATCATTTTGT-GTTGTATATTATGTG-ACAACATGC-ACGAAAA---CAC-AATTTT--TATGA-TTTGTG-GGG--TTAT-TA-C-TTGCC-TG--------GGTAA-CCGTT--A-CC-C-AA-AT-TTCAGTA-ATGAT--TA-TAAT-CTT-CAA--AT-TTTTC--CTT-CAGAATA-TA-T-ATGGGTTA-CAT-----ATATAAATAT-TACTAGAAA--ATGACCTTATTTTT-ATT-TGAT---TTTTG-TC--AT-TA--GTTTT-CAAGG-AAAACTTG-CAGTTTTCC-GGTAGTTAAAGGGTTAAataagttcgagtt
gi|9 : AGAC-----TTGTAC----TGCAAA-TGTACCA-GGAGA--A-TGTTCATCAAATC--T-AT-TCT--ATA---TC---GTTTTTCATAGGAAAA--AAA---AAA----------G-G-AA--AATGTA--ATG-ACA-----GT------AAG-TATAACAAGCCGCTT-CT-TAG-TACTTCAAAGTATG---TGTAT-CTATATC-TA-ATATATTTTATATATACTATGTATAGCA--TCC-ATATTTGCATAA--GTATGCTCTATA-ATG-AT-AA-ATACAA-CTGA--CCAA--AATTG-ATT--AA-TGATGA-TGT-AGGTCATC-ATTTG--GT-G--TAT-ATGTG-ACAAAATGC-ACG---A--ACAC-A---TT--TATGA--TTGTGTTGG-GTTAT-TA-CGT--GC-C-AT------GGTAA--CGAT--A-CC-acgtaataaa
blockSeqs : T TAC T C GCATTA . AT C GTG A A . T AAA A T GGCCTA T A C ATT C . TT C C GGTTAAAAT T C . CTA A A AAA AAGACAC T T A TT A A C . T G ACTAGTA CA C A AGTAGGAA AG . G AT A C A TG T C A . GA TC T ATTA C AC TGC G A AT CA G CTGAGT . TG T G AAAAAACC G G T AT TAGTC T AA G AT . CA G CC A A CAATCTTTT T G . GAAAAT . TG GG . GTGA T T T AGC CA G G A C . CG T ATATATTTTATATATACTATGT G . T C TT A . A TG CT AC G . T C T G C T TT G AT . . GT AG A G AG GTAATCCATTA A TC C G A T . GG G CCTTT G CA G GG TC C G C . TATC A . A G TGAAA T AA G AGT G A A AA
blockSeqs : A . T C TTAT . TA G AG . . . . AA . . TGTCTA . A . . . . . . . ATTAAATAT . . . CTA . . A . . . T TT . G . . T . . T . . ATAAAA . . . T . . A . T T A . . . . CTTA . T TG . . A . A . . . C . TTTTAAAC G A . . C . AT A . . . T . . . TTGATTTT . G . GAAAGT . . . . AT . T C TG T . G A C . C A T A . . T TT . . . . T A C . . A . . A . . . A . . G G . . GG CAAT . T . G . . . . . CTCT A C . . TC . . . . . . . . . AAATG . . . AA . . . T
blockSeqs : T . T . TTA . T T G . . . . A . . TTA . . . . . . . . . ATT . . . TA . . G . . . A AT . A . . T . . A . . AGAA . . . T . . C . T C C . . . . TCTA . . TG . . A . A . . . C . TTTTAACC A A . . . . T G . . . A . . . CTATATCG . G . AAAG . . . . GT . T C TG . . G C C . A T A A . . C TT . . . . G A C . . . . . A . . . T . . G G . . GG CAAT . . . . . . . . . CTT G C . . TC . . . . . . . . . AGCAT . . . A . . . G
blockSeqs : . . . . . . . . A . . TC . . . . . . . . . ATT . . . . . . G . . . A T . A . . T . . T . . AACA . . . T . . G . . C A . . . . ATCC . . TA . . . . A . . . G . AAAC G A . . . . T G . . . T . . . TAATTT . G . GAA . . . . GT . T C TG . . G A C . G T C G . . C TT . . . . G A C . . . . . A . . . T . . G G . . GC CAT . . . . . . . . . CTT G C . . TT . . . . . . . . . AAAAA . . . A . . . G
blockSeqs : . . . . . ATT . . . . . . G . . . A T . . . . . . . A . . AAAA . . . T . . C . . C A . . . . CT . . G . . . . . . . . . . AA . A . . . . A . . . . A . . . TAATC . . . TTG . . . . G . . . T . . . . . . C . A G . . . CT . . . . G T C . . . . . A . . . T . . G G . . G CAT . . . . . . . . . CTT A C . . TC . . . . . . . . . AAAA . . . A . . . .
blockSeqs : . ATT . . . . . . G . . . A . . . . . . . . T . . AA . . . T . . C . . A . . . . . T . . . . . . . A . . . . T . . . . . A T . . . . . C . . . T . . . . . . G AT . . . . . . . . . CTT A C . . T . . . . . . . . . TAAA . . . A . .
blockSeqs : . . A . . A . . . . . . A T . . A . . . . . . C . . . . . . . . . . G TG . . . . . . CTT . . . . C . . . . . . . . . AT .
blockSeqs : . .
blockSeqCons : T** GG* AA* TCTA** ATT******************* **** G*** T** AGAA********** ** T** ** A* TAATTT********** ** GAAAG************* ** GT********** TG* ** G* *** A********************** ** TT A* ** GG CTT** C* TC ** AGAAA A**
originalCons : GTCAGAATNTGAAA---ATACAT-----TTA-T--A-TAT-T-GTGACTTTTTCCCCTG-GACT-TCCTAT-GCGTGACTTTT-T-CCCTTTG-AACT-TTC-TTGTCTACATCCTAAGA-AAATTAGA-TCA---TTACTGAAACCTGTAT-ACATAT-TGCA--CA-TAGTT-T------AT------T-------GG-A-CAGTTT----CCCC---TTTCA-T-GG--G-AAGAAA-------AGG-CTGA-AATAGTT-T-AGAAG-GAAATTGA-T-GTAATTAT-TA-------TGTTGCCTACG-AC-AAACAT------A----A--TAT--G--T-TTATAC-T-ACAT-TCT-AATTNTAAACAC--TTTTTTATTCTTAAT-AT--TT--AGA-AAACTTAAGGAT-AA--GTG-AT-TCACTTA-GTTGTCAA-TGGTAATTATAAAA--ATTAAAGTA------AT-TTAA--AACT-TTT----A---AA---CCCTTTTTGAATACTTATAGAC-CA--TTGTA-----TGAAAA-TGTACCATGGAGA--A-TGTT--TCAANTC--T-AT-T-T--A-A---TC---TTTTTTCA-AGGAAAA--AAA--GAAA----------A-G-AA--AATGTA--ATG-ACA-----GT-----AAAG-TATAACATG-CGCAT-CT-TAG-TACTTCAAAGTATG---TGTAT-NTATATTGTA-A---------------------ATAGCA--TCCAATA-TTGCATAAATGTATGTTGTATATATGTAT-AA-ATACAA-CTGATCCTAA--AATTG-ATTTAAA-TGATGACTGTAAAGTCATCAATTTGT-GT-GT-TAT-ATGTG-ANAAAATGC-ACGAAAA--ACAC-A-TTTT--TATGA-TTTGTG-GGG-GTTAT-TA-CGTTGGC-CAAT------GGTAA-CCGTT--A-CC-C-AA-AT-TTCAGTACATGAT--TA-TAAT-CTTTCGAC-AT-TTTTC--CTTTCAGAATA-TA-T-ATGGGTTA-CATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTTATT-TGAGAAATTTTG-TC--AT-TAA-GTTTT-CAAGG-AAAACTTG-AAATTTTCC-GGTAGTTAAAGGGTTAA
finalCons : GTCAGAATNTGAAA---ATACAT-----TTA-T--A-TATT--GTGACTTTTTCCCCTGG-ACT-TCCTAT-GCGTGACTTTT-T-CCCTTTGAA-CT-TTC-TTCTA--CATCCTAAGA-AAATTAGA-TCA---TTACTGAAACCTGTAT-ACATAT-TGCA--CA-TAGTT-TATT-------------------GG-A-CAGTTT----CCCC---TTTCA-T-GGG---AAGAAA-------AGG-CTGA-AATAGTTT--AGAAG-GAAATTGA-T-GTAATTAT-TA-------TGTTGCCTACG-AC-AAACATAGAA----------TAT--G--T-TTATACT--ACAT-TCT-AATTNTAAACAC--TTTTTTATTCTTAAT-AT--TT--AGA-AAACTTAAGGAT-AA--GTG-AT-TCACTTA-GTTGTCAA-TGGTAATTATAAAA--ATTAAAGTA------AT-TTAA--AACT-TTT----A---AA---CCCTTTTTGAATACTTATAGAC-CA--TTGTA-----TGAAAA-TGTACCATGGAGA--A-TGTT--TCAANTC--T-AT-TTAATTT----------TTTTTCA-AGGAAAA--AAAGAAAG-------------G-AA--AATGTA--ATG-ACAGT----------AAAG-TATAACATG-CGCA--CT-TAG-TACTTCAAAGTATG---TGTAT-NTATATTGTAA----------------------ATAGCA--TCCAATA-TTGCATAAATGTATGTTGTATATATGTAT-AA-ATACAA-CTGATCCTAA--AATTG-ATTTAAA-TGATGACTGTAAAGTCATCAATTTGT-GT-GT-TAT-ATGTG-ANAAAATGC-ACGAAAA--ACAC-A-TTTT--TATGA-TTTGTG-GGG-GTTAT-TA-CGTTGGC-CAAT------GGTAA-CCGTT--A-CC-C-AA-AT-TTCAGTACATGAT--TA-TAATCTT--CGAC-AT-TTTTC--CTTTCAGAATA-TA-T-ATGGGTTA-CATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTTATT-TGAGAAATTTTG-TC--AT-TA--GTTTT-CAAGG-AAAACTTG-AAATTTTCC-GGTAGTTAAAGGGTTAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTTCTAGTTGTTAAATAGCAGTGGTAGCCAAAACAGTGATATTAAGACTTATCCCAA
Unaligned ( gi|16 ): TTTTACAGTGACTTCTTTCCTAATTAGTACTGTCAGAATTTGAA
Alignments
lowQualScore : 111 333333333333 111 222 2222222222 1 111 33333333333333 111111 1111 222 1 22222222 111 1 1111111 22 222222 1 1 11 222 111111 33333333333333333333 22222 11 222222222222222222 111 1111 1111 2222222 5555555555555555555555 1111111 1111 11 1 22222222222 11 1 1111 11
lowQualScore : 1 777 3 2 222222222222 8 666 0 3 444 8 8 8 8 999 7777777777 8 0 8 444 0 6 6 99 6 11111111111111 666666 5 5 2222 777 5 1 77 00000000 5 5 1 555 99999 1 1 5 6666666 66 5 5 777777 5 777 5 5 1 77 9 0 3 0 5 5 77 77 5 6666 1 33 666 6 6 111 0 99 1 999999 6 99 5 6 00000000000000000000 1 1 5 77 00000 5 99 77 99 99 7 99 666666666666666666 6 6 44 666 99 99 99 6 1 4444 888 6 5 4444 1111111 77 3 1 0000000000000000000000 5 1 5 5 8 8888888 2222 0 5 5 5 66 33 44 5 3 0 5 5 0 5 5 1 5 66 4 55 66 5 77 77 5 5 7 55555555555 5 11 5 0 5 5 5 66 5 66 1 5 5 66 44 5 5 5 5 0000 5 66 5 0 5 88888 5 77 5 5 555 77 5 6 11
lowQualScore : . ... . . ............ . ... . . ... . . . . ... .......... . . . ... . . . .. . .............. ...... . . .... ... . . .. ........ . . . ... ..... . . . ....... .. . . ...... . ... . . . .. . . . . . . .. .. . .... . .. ... . . ... . .. . ...... . .. . . .................... . . . .. ..... . .. .. .. .. . .. .................. . . .. ... .. .. .. . . .... ... . . .... ....... .. . . ...................... . . . . . ....... .... . . . . .. .. .. . . . . . . . . . . .. . .. .. . .. .. . . . ........... . .. . . . . . .. . .. . . . .. .. . . . . .... . .. . . . ..... . .. . . ... .. . . ..
lowQualScore : 0 555 2 5 000000000000 0 888 8 2 222 0 0 0 0 666 0000000000 0 6 0 000 8 7 7 22 7 77777777777777 444444 7 7 1111 999 7 4 99 00000000 7 7 7 111 00000 4 4 0 2222222 88 0 0 999999 0 111 0 0 0 99 0 1 0 1 1 7 99 99 7 7777 4 66 666 7 7 222 3 22 7 222222 7 22 2 7 22222222222222222222 0 7 7 99 00000 7 00 77 22 22 5 22 888888888888888888 7 7 22 333 22 22 22 7 0 2222 777 7 7 2222 7777777 77 5 7 1111111111111111111111 3 7 7 7 9 4444444 1111 1 7 7 7 99 88 22 0 4 1 0 0 0 0 0 0 0 11 4 44 99 0 55 55 0 0 6 00000000000 0 99 0 0 7 7 7 99 0 99 1 0 0 99 66 0 0 0 0 6666 0 99 0 9 0 22222 0 99 7 7 999 99 7 7 88
consensus : GTCAGAATNTGAAA---ATACAT-----TTA-T--A-TAT-T-GTGACTTTTTCCCCTG-GACT-TCCTAT-GCGTGACTTTT-T-CCCTTTG-AACTTTCT---T---CTACATCCTAAGA-AAATTAGA-TCA---TTACTGAAACCTGTAT-ACATAT-TGCA--CA-TAGTT-------T------ATT------GG-AC-AGTTT----CCCC---TTTCA-T-GG--GAAGAAA-------AGG-CTGA-AATAGTT-T-AGAAG-GAAATTGA-TGTAATTAT-TA-------TGTTGCCTACG-AC-AAACATA----AAATATGT-TTATAC-T-ACAT-TCT-AATTNTAAACAC--TTTTTTATTCTTAAT-AT--TT--AGA-AAACTTAAGGAT-AA--GTG-AT-TCACTTA-GTTGTCAA-TGGTAATTATAAAA--ATTAAAGTA------AT-TTAA--AACT-TT---T----A---AA---CCCTTTTTGAATACTTATAGAC-CA--TTGTA-----TGAAAA-TGTACCATGGAG-AAT--GTT--TCAANTC--TA-T-T-T--A-A---T---TTTTTTTCA-AGGAAAAAAAGAAAG-GAA--AATGTA--ATGACAGT--AAAG-TATAACAT--G-CGC-A-CT-TAGTACTTCAAAGTA----TGTG-------TAT-NTATATTGTAA---------------------ATAGCATCCA-ATA-TTGCATAA-A-----TGTATGTTGTAT----ATATGTAT-AA-ATACAA-CTGATCCTAA--AATT-GATTTAAA-TGATGACTGTAAAGTCATCAATTTG-TGT-GT-TAT-ATGT-GANAAAATGC-ACGAAAA--ACAC-A-TTT--TTATG-ATTTGTG-GGG-GTTAT-TA-CGTTGGC-CAAT------GGTAA-CCGTT--A-CC-C-AA-AT-TTCAGTACATGAT--TA-TAATC--TTCGAC-AT-TTTTC--CTTTCAGAATA-TA-T-ATGGGTT-ACATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTTATT-TGAGAAATTTTG-TC--AT-T-AG-T-TTT--CAAGG-AAAACTTG-AAATTTTCC-GGTAGTTAAAGGGTTAA
Reference ( family-4184 ) : GTCAGAATNTGAAA---ATACAT-----TTA-T--A-TAT-T-GTGACTTTTTCCCCTG-GACT-TCCTAT-GCGTGACTTTT-T-CCCTTTG-AACTTTCT---T---CTACATCCTAAGA-AAATTAGA-TCA---TTACTGAAACCTGTAT-ACATAT-TGCA--CA-TAGTT-------T------ATT------GG-AC-AGTTT----CCCC---TTTCA-T-GG--GAAGAAA-------AGG-CTGA-AATAGTT-T-AGAAG-GAAATTGA-TGTAATTAT-TA-------TGTTGCCTACG-AC-AAACATA----GAATATGT-TTATAC-T-ACAT-TCT-AATTNTAAACAC--TTTTTTATTCTTAAT-AT--TT--AGA-AAACTTAAGGAT-AA--GTG-AT-TCACTTA-GTTGTCAA-TGGTAATTATAAAA--ATTAAAGTA------AT-TTAA--AACT-TT---T----A---AA---CCCTTTTTGAATACTTATAGAC-CA--TTGTA-----TGAAAA-TGTACCATGGAG-AAT--GTT--TCAANTC--TA-T-T-T--A-A---T---TTTTTTTCA-AGGAAAAAAAGAAAG-GAA--AATGTA--ATGACAGT--AAAG-TATAACAT--G-CGC-A-CT-TAGTACTTCAAAGTA----TGTG-------TAT-NTATATTGTAA---------------------ATAGCATCCA-ATA-TTGCATAA-A-----TGTATGTTGTAT----ATATGTAT-AA-ATACAA-CTGATCCTAA--AATT-GATTTAAA-TGATGACTGTAAAGTCATCAATTTG-TGT-GT-TAT-ATGT-GANAAAATGC-ACGAAAA--ACAC-A-TTT--TTATG-ATTTGTG-GGG-GTTAT-TA-CGTTGGC-CAAT------GGTAA-CCGTT--A-CC-C-AA-AT-TTCAGTACATGAT--TA-TAATC--TTCGAC-AT-TTTTC--CTTTCAGAATA-TA-T-ATGGGTT-ACATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTTATT-TGAGAAATTTTG-TC--AT-T-AG-T-TTT--CAAGG-AAAACTTG-AAATTTTCC-GGTAGTTAAAGGGTTAA
gi|1 : GTCAGAATATGAAA---A-ACATGCAAGTTAAT--AGTAT-T-GTGACTTTTTTCCCTGAGACT-TCCTAT-GCGTGACTTTTGT-TCCTTTG-AACTTTCT---T---TCTCATCCGAAGA-ACATTAGA-TCA---TTACTGAAACCTGTAT-ACATATCTGC---CA-TAGTTTATTAAAT------ATT------GG-AC-AGTTTTTCCCCCT---TTTCA-TGGG--GAAGAAA-------AGG-CTGA-AAT-GTT-T-AGAAG-G-AATTGATTGCAATTAT-TA-------TGTTGCCT-CG-AC-AAACATA----CCATGGTT-TTATAC-TGACAT-TCT-AATTCTAAGCAC--TTTTTTATT-TTATTCAT--TT--AG--AAACTTAAGGATAAA--GTG-AT-TCACTTA-GTTGTC-A-TGGTAATTATAAA-----TAAAGT--------TCTTCA--AACT-TTTTAT----A---AA---CCTTTTTTGAATACTT-TAGAC-CA--TTGTA-----T-AAAG-TACGCTA-GGAGAAAT--GTT--TCAA-TC--TATT-T-T--A-AGTCT---CTTTTTTCA-AG---AAAAAGGAAA-GAA--AATGTA--ATGACAGT--AAAG-TATACCAT--G-CAC-ATCT-TAGTGCTTCAAAGTAATAGTGTATTATATCTAT-CTATATTATAC---------------------AT--TATATATATA-TTGTATAATAGCAATTCCATATTGCATAAAGATGTGTAT-AACATACAA-CTGATCCTAA--AA-T-GATTT-AA-TGATGATTGTAAAGTCATCAATTTGTTGT-GT-TAT-GTG--GACAAAA-GC-ACGAAAA--ACAC-A-TTTTCTTATGAATTTGTG-GGG-TTTTA-TA-CGTT-GC-C-AT------GGTAA-CCGTT--A-CC-C-AA-ATATTCAGTACATTAT--TA-TAAT---TTCA---AT-TTTTT--CTT--AGAATA-TA-T-ATGGGTTAACATT----ATAAAAATAT-TACTAGAAAACATG--CTTATTTTTTATT-TG-GAAATTTTG-TC--AT-T-AGTT-TTT--CAAGA-AAA
gi|10 : aaatgtacaatttttttagtggacattctttcgctatgtactGGTCCTAATGAATT--ATTAGAACTG--GAGTGTAAAGTCATCAGTT-G-TGT-GTCTAT-ATGT--ACAAAATCCTACGAACA--ACAC-C-ATT--TTATG-ATTTGTG-GG---TTAT-TAGCGTTG-C-CAAT------GGTAA-CCGTTTCG-CCGC-AA-AT-TTCAGTACATA----TA-TACTC--TC--AC-AT-GTTTC--CTTTCA-AATACTAGT-ATGG-TT-ACATT----ATAAAAATAT-TACTAATAA--ATG-CCTTA-TTTTTATT-TTTGAAATTTTG-TCAAAT-T-AG-T-TTT--CCAGGAAAAACTTG-AAATTTTCT-GGTA-TTAAAGGGTTAA
gi|11 : ctgAAAATTACATGA-TTG--TGATG-ATTT-TG-GGGAGGTATATA--ATTAGCGTAATCCATTAGGTAAACCATTT-A-C----AA-AT-TTCAGTACATGAT--TG-TAATC--TTCGAC-AT-TTTTC--CTTTCAGAATA-TA-T-ATGGGTT-ACATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTTATT-TGAAATGTTCTG-ca
gi|12 : gcACATGATGGTAGTAATC--TTCAAC-AT-TTT-CGGCTTTCCGAATA-TA-TCATGGGTT-ACATTTATCACAAGAATATATACTAGAAA--ATG-CCTTATTTTTTATTGTGAGCATTGTTGTTC--ATGT-AG-TGTTTTGTAAGG--ACACTTG-AAATTTTTC-TGTAGTTAAAGGGTgtagttaaagggttaaatctcgcacacaaagaatt
gi|13 : -----TGTATGTTGTAT----ATATGTAT-AA-ATACAA-CTGATCCTAA--AATT-TATTTAAA-TGATGACTGTAAAGTCATCAATTTG-TGT-GT-TAT-ATGT-GAAATAATGC-ACGAAAA--ACAC-aacagtggtagtcaaaagagctgatataaaacgactcatcgccaaa
gi|14 : ccaaatttgaattttaaaatatT-------T------ATT------GG-AC-AGTTT----CCCCCTATTTCA-T-GG--AAAGAAA-------AGG-TTGA-AGTAGTT-TTAGAAG-GAA-CTGA-TGTAATTAT-TA-------TGTTGCAT-TG-AC-AAACATA----GAATATGT-TTATAC-T-ACAT-TCT-AATTATAA
gi|2 : GTCAGAATTTGAAA---ATA-AT-----TTA-T--A-TAT-T-GTGACTTTTTCCCCTGTGACT-TCCTAT-GCGTGA--TTT-T-CCCTTTG-AACTATCC---TGGCCTACATCCTAAGA-AA-TTACA-TCAATTTTACTTGAACCTGTAT-ACATAT-TGCA--CA-TAGTT-------T------ATT------G--AC-AGTTT----TCCT---TTTCAAT-GG--GAAGAAA-------AGG-TTGA-AATTGTT-T-AGAAG-GAAATTGA-TGTAATTAT-TAACTAGTATGTTGCCCACG-AC-AAACATA-------TATGT-TTATAC-T-AGAT-TCT-AATTATAAGCAC--TTTTT-ATTCATAAT-AT--TT--AGA-AAAATTAAGGGT-AAT-GTG-AT-TCATTTAAGTTGCCAA-TGGTAATTAATAAA--ATTAAGGTACTGAGTAT-TTAA--AA-T-TT---T----A---AAAAACCCCTTTTGA-TACTTGTAGACTCAATTTGTA-----TGAAAA-TTTACC-TGGAG-AAT--GTT--TCAAGTCCCTA-T-T-T--A-A---T---TTTATTTCA-AGGAAAAAAAGAAAATAAA--AATG-A--ATGACAAT--AAAT-TATAATAT----CGC-A-CT-TAGTACTTCAAAGTA----TGTG-------TAT-CTATA-TATAT---------------------ATAGCGTCCA-AAA-TTG-ATAA-A-----TGTATG-TGTAT----ATATGCATAAA-ATACAA-CTGATCCTAA--AATT--ATTTGAA-TGATGACTGTAAAGTCATCAATTTG-TGT-GT-TAT-ATGT-GAAAAAATGC-G-AAAAA--ACAC-A-TTT--TTATG-ATTTGTG-GGG-GTTAT-TA-CGTTGGC-CAAT------GGTAA-CCGTT--A-CCGCAAA-AT-TTCAGTACATTAT--TA-TAATCCTTTCGACAAA-TTTTC--CTTTTAGAATA-TA-T-ATGGGTT-ACATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTTATT-TGAAAAATTTTG-TC--AT-TAAG-G-TTT--CAAGG-AAAACTTGAAAATTTTTC--GTAGTTAAAGGATTAAg
gi|3 : AT-GCAAAT-TGCA--CA-TAATT-------T------ATT------GG-AC-AGTTT----TCCCCTATTTCA-T-CG--GAAGAAA--------GG-TTGA-AATAGTT-TTAGGAG-GGA-TTGA-TATAATTAT-TT-------TGTTGCC-ACG-GT-AAACATATA--AAATATGT-TTAGAC-T-ACAT-TCT-ACTTCTAAACAC--TTTGT-ATTTTTTAT-CC--TTTCAGA-ATAT------AT-AA--G---AT-TTATTTC-GTTGTCA--TGGTAAATATAAAACAATTAA-GTA------AT-GTCATGAATT-TT---TTTTTA---AA---C---TTTTGAATACTTATAGAT-CA--TTGTG-----TGAAAA-TGTACC-TGGAA-AATATGTT--TCAATTC--TAAT-T-C--A-A---TCTTTTTTTTTCA-AGGAAAAAAGGAA---GAA--AATGTA--ATGACAGT--AAAG-TA-AA-AT--G-CGC-A-CT-TTGTACTTCAATGTA----TGTG-------TAT-ATATATTGTAA---------------------ATAACATCCA-ATA-TTGCATAA-A-----TATATGTTGTAT----ATATGTAT-AA-ATACAA-TTGATCCTAA--AATT-GATTTAAA-TGATGACTGTAAAGTAATCAATTCG-TGT-TT-TAT-ATGT-GAAAAAATGC-ACGAAAA--ACAC-A-TTT--TTATC-ATTTGT--GGG-GTTAT-TA-CGTT-GC-C-AT------GGTAA-CCGTT--ACCC-C-AA-AT-TTCATTACATGAT--TA-TAATC--TTCGAC-AT-TTTTC--CTTTCAGAATA-TA-T-TTGGGTT-ACATT----ATAAAAATAT-TACTAGAAA--ATG-CCTTATTTTTCATT-TGAAAA--TTTG-TC--AT-T-AG-T-TTT--GAAGG-AAAACTTT-AAATTTTCT-GGTAGTTAAAGGGTTAA
gi|4 : tgGTCATAATATGAAA---ATACAT-----GCA-TTAA-TATAT-GTGACTTTTCCCCGTG--ACT-TCTCATAGCGTGACTTTT-T-CCCTTTG--ACTTTCTTTGT---CTACATCCTAAGATAAACTAGACTCA---TTACTGAAACCTGTATCACATAT-TGCATTCA-TAGTT-------TGGTTAAAAT------GG-AC-AGTTT----CCCC---TATCA-TAGG--GAAGAAAAAGACACAGG-CTAG-AATAGTT----GAAGAGAAGGTGA-TGTAATTATGTA-------T-TTCCCT-CG-AC-AAACTTA----ACATACGTGTTATATAT-ACATATCT-AATTGCAAACACTGTTTTTTA-TCTTACT-AT--TT--AGA-AAACTTAAGGATCAAACGTGCATGTCAC-TA-GTTGTCCATTGGGAATTATGAAA--AATAAAGGA------TC-TTAA--AACT-TT---T----A---A------CCTTTTAAATACTTATA-AC-CA--TTGTATAGTCTGAAAATTGTACCAAGGAG-AA----TT--TCACATA--TA-TAT-T--A-A--------TCTTTTCA-AG--AAAAAAGAAAGTGAATGAGAGTAGGAAGACAG---AAGGTTATAACATGCG-CGC-A-CTGTAGT-----GGAGGG----TGTG-------CATCGTGTAAAGTAC---------------------TTA--ATCTA-ATA-TCG----A-G-----TATATATTTTA
gi|5 : gtaccatacagtttgactttttacatgccattcttctattagtactAT-TA-------TGTCGCC-ACG-GC-AAACATA----AAATATGT-TTATAC-T-ACAT-TCT-AATTCTATACAC--TTCGT-ACTCTTA-T-AT--TT--AGA-AAACT---------A--G-G-AT-TCGTTTA-GTTGCCA--TGGTCATTATAAAA--TTTAAAGTA------AT-TTAA--A-CT-TT---T----TTTTAA---CCTTTTTT-AATACTTATAGAC-CA--TTGTA-----TGAAAA-TATACCATTTA--AAT--GTT--TCGATTT--TA-T-T-TTGA-T---T---TTTTTTTCA-AGGAAAAAAAT--TG-GAA--AATCTA--TTGACAGTGAAAAG-TATAGCAT--G-CGC-A-CT-TA-TCCTTCAAATCA----TGTG-------TTT-GTGTGTTGTAA---------------------ATAACATTCA-ATA-CTATAGAA-A-----TATATGTTGTAT----ATTTGTAT-AA-ATATAA-GTGGTCCT----AATTCTATTTAAT-TGATGACATTAAATTCATCAATTTG-TGT-GT-TTT-ATGTGGAAAAAATAC-ACGAAAA--ACAC-A-TTT--TTATG-ATTTGT--GGG-GTTAT-GT-TGTTGGC---AT------GGTAA-CCGAT--A-CC-C-CATAT-TTCAGTACATGAT--TA-ACATC--TTCAAC-ATGTTTCC--CTTT-----TA-TA-T-ATAGGTT-ACATT----ATAAGAATAT-TACTAGAAA--ATG-CCGTATTTTTCATT-T--TAAATTTTG-TC--AT-T-AG-T-TTT--GAAGG-AAAACTTG-ATTTTTTTTAAGTAGTTAATGGGTTAAatttattgtggagttccaatagtgcctataccgcctattggtttatatagt
gi|6 : aGTCAGAATTTGAAATACATGCAT-----TTA----A-TAT---ATG-----------TA-GACT-TCCTAT-GCGTGACTTTT-TTCCCTTTG-A-CTTTTT---T----TACATTCTAAGA-AA-TTAGA-TCA---TTACTGAAACCTGTAT-ACATAT-TGCA--CA-TAGTT-------T------ATTAAATATGG-ACCAGTTC----CCTA---TTTCA-T-GG--GAAGAA---------GG-CTGA-AATAGTT-T-TGAAG-AAGATTGA-TGTA--TAT-TA-------TGTTGCCT-CG-A--AAACATA----ACATAGGT-TTATAC-T-ACAT-TCT-AATTCTAAACAC--TTTTT-ATTCT--AT-TT--TT--AGA-AAATCTAAGGAT-AA--GTG-AG-TCACTTA-GTTGTCCA-TGGTAATTATGAAA--ATATAAGTA------AT-TTAA--AAGTGTT---T----A---AA---CC-TTTTTGAATACTTATAAAC-CA--TTGTA-----TGAAAA-TGTAa
gi|7 : gactgtttttacagtgacattctttcctattagtact--A-TAT-TAGTGACTTTTTCCCTT---ACTATCCTAT-GTGTGACTTTT-T-CCCTGCGAAACTTTCT---T---C--CACCCTTAGA-AAATTACA-TCA---T------AAC----AT-ATATTC-TGCA--CACTATTTC------T------ATT------GGTAC-AAGTC----CCCCTA-TTTCA-T-GGAAAAAGAAA-------AGGTTTGATAGTATTTAT-AGAAG---AACTGACTGTAA-TA--TA-------TGTTGCA-ATGCACAAAACATAGTAGGAATATGT-ATATAC----CAT-TCTCAATTAT-AACAC--TTTTTTATTATCAAG-ATGATC--TGATAAAATCCAGGAC-AA--GTA-A
gi|8 : tttcgtcgcacccaactccaatggaagagtgctactaatatcaaaccatttaattataatcGTAA---------------------ATAGCATC-A-ATA-TTGCATAA-A-----TGTATGT-GTGT----ATATGTAT-AA-ATACAAACTGATCCTAA--AATT-GATTTAAA--GATGATTG--AAGTCATCATTTTG-TGTTGTATATTATGT-GACAACATGC-ACGAAAA---CAC-AATTT--TTATG-ATTTGTG-GGG--TTAT-TA-C-TTGCC-TG--------GGTAA-CCGTT--A-CC-C-AA-AT-TTCAGTA-ATGAT--TA-TAATC--TTCAA--AT-TTTTC--CTT-CAGAATA-TA-T-ATGGGTT-ACAT-----ATATAAATAT-TACTAGAAA--ATGACCTTATTTTT-ATT-TGAT---TTTTG-TC--AT-T-AG-T-TTT--CAAGG-AAAACTTG-CAGTTTTCC-GGTAGTTAAAGGGTTAAataagttcgagtt
gi|9 : AGAC-----TTGTAC----TGCAAA-TGTACCA-GGAG-AAT--GTTCATCAAATC--TA-T-TCT--ATA---T---CGTTTTTCATAGGAAAAAAA-AAAG-GAA--AATGTA--ATGACAGT---AAG-TATAACAA--GCCGCTT-CT-TAGTACTTCAAAGTA----TGTG-------TAT-CTATATC-TAATATATTTTATATATACTATGTATAGCATCC--ATATTTGCATAA--------GTATGCTCTAT----A-ATG-AT-AA-ATACAA-CTGA--CCAA--AATT-GATT--AA-TGATGA-TGT-AGGTCATC-ATTTG--GT-G--TAT-ATGT-GACAAAATGC-ACG---A--ACAC-A---T--TTATG-A-TTGTGTTGG-GTTAT-TA-CGT--GC-C-AT------GGTAA--CGAT--A-CC-acgtaataaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTTCTAGTTGTTAAATAGCAGTGGTAGCCAAAACAGTGATATTAAGACTTATCCCAA
Unaligned ( gi|16 ): TTTTACAGTGACTTCTTTCCTAATTAGTACTGTCAGAATTTGAA