lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111
lowQualScore : 222 2222222 2222222 3 111111 1111 333333333333333333333333333333 444444444444444444 1111 55555555555555555 11 111 111111111111 666666666 222 33333 1111 22222 111111 11 2 22222 11 11 3333333 3 11 22 11111 1111 11 111 2222222 2 11 22 555555555 11 666666666666666666666666666666 1 333333333333 11 11 1 111 2 111 111 222 33333 111 3333333333 1 11 2 11 1 22 333333 11 1111 2222 111 11111 111111111 3 11 22 44444444444444444 11 333333 1 2 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 111 11 3 3 2 333333333 2222 11 3 444444 11111111 44 111 4 333 222 11 1 888888888888888888888888888888888888888888888888888888888888888 11 222 1 222 4444444444444 1 11 1 77777777777777777777 11111 8888888888888888888888888888888888 4 333 44444444444444444 222 777777777777777777777 1 11 55 1 444444 4 4 4 4 222222222222222222222222 1 1 999999999999999999
lowQualScore : 8 4 4 222 66 8888888 8 4 66 4 4 0 4 6666666 8 4 66 4 4 66 222222 7 2222 66 4 4 333333333333333333333333333333 0 888 8 66 66 777777777777777777 88 0000 33333333333333333 33 5 77 000 77 666666666666 222222222 000 77 11111 5555 5 99999 66 444444 66 5 66 66 22 5 5 5 555 5 5 1 5 5 5 5 0 5 5 99999 5 11 00 5 5 0000000 3 33 99 2 4 6 22 3 6 66666 7777 22 000 6 99 1 5555555 6 99 6 4 0 6 44 6 6 6 99 99 111111111 33 77 6 333333333333333333333333333333 3 222222222222 44 55 6 1 6 6 5 888 0 555 99 111 6 666 55555 111 0 0 6666666666 0 0 8 6 11 8 4 11 6 8 22 8 8 8 888888 6 88 9999 6 6 6 5555 99 111 88888 6 6 3 777777777 0 99 44 11 6 1 99 6 11111111111111111 5 5 5 33 5 5 5 333333 0 5 66 66 5 5 0 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 6 8 666 3 11 2 8 0 3 4 4 666666666 8 44 5555 8 2 44 0 999999 88888888 5 22 5 5 000 77 5 5 5 0 5 5 5 77 222 5 5 5 111 6 55 6 99 5 5 666666666666666666666666666666666666666666666666666666666666666 55 333 3 5 88 666 3333333333333 5 88 4 5 3 33333333333333333333 8 66666 1111111111111111111111111111111111 0 555 4 77777777777777777 444 222222222222222222222 5 88 55 5 333333 6 0 0 0 0 222222222222222222222222 5 6 5 6 555555555555555555
lowQualScore : . . . ... .. ....... . . .. . . . . ....... . . .. . . .. ...... . .... .. . . .............................. . ... . .. .. .................. .. .... ................. .. . .. ... .. ............ ......... ... .. ..... .... . ..... .. ...... .. . .. .. .. . . . ... . . . . . . . . . . ..... . .. .. . . ....... . .. .. . . . .. . . ..... .... .. ... . .. . ....... . .. . . . . .. . . . .. .. ......... .. .. . .............................. . ............ .. .. . . . . . ... . ... .. ... . ... ..... ... . . .......... . . . . .. . . .. . . .. . . . ...... . .. .... . . . .... .. ... ..... . . . ......... . .. .. .. . . .. . ................. . . . .. . . . ...... . . .. .. . . . ............................................................................................................. . . ... . .. . . . . . . ......... . .. .... . . .. . ...... ........ . .. . . ... .. . . . . . . . .. ... . . . ... . .. . .. . . ............................................................... .. ... . . .. ... ............. . .. . . . .................... . ..... .................................. . ... . ................. ... ..................... . .. .. . ...... . . . . . ........................ . . . . ..................
lowQualScore : 9 4 4 888 11 6666666 9 4 11 4 4 1 4 2222222 9 4 11 4 4 11 888888 4 1111 11 4 4 111111111111111111111111111111 7 999 9 11 11 222222222222222222 11 6666 11111111111111111 66 7 99 000 99 666666666666 222222222 999 99 44444 6666 0 66666 99 444444 99 0 99 99 55 0 0 0 888 0 0 6 0 0 0 0 1 0 0 88888 0 99 77 7 7 0000000 3 33 22 5 0 7 22 7 7 33333 3333 77 222 7 22 0 8888888 7 22 7 2 0 7 22 7 7 7 22 22 888888888 77 33 7 888888888888888888888888888888 3 222222222222 00 88 7 7 7 7 0 333 0 333 22 777 7 000 00000 777 8 8 4444444444 6 8 0 0 00 0 0 22 0 0 00 0 0 0 666666 7 00 0000 7 7 7 2222 22 777 77777 7 7 3 333333333 2 88 00 33 7 0 22 7 88888888888888888 7 0 0 44 0 0 0 222222 0 0 99 99 0 0 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 444 2 00 0 0 8 2 0 0 000000000 0 00 0000 0 8 00 0 777777 77777777 7 11 7 0 000 99 7 7 7 0 7 7 7 99 999 7 7 7 888 7 88 7 22 5 0 777777777777777777777777777777777777777777777777777777777777777 77 333 0 5 00 555 5555555555555 0 00 0 5 0 00000000000000000000 3 33333 7777777777777777777777777777777777 0 000 7 00000000000000000 777 555555555555555555555 0 00 00 0 000000 0 0 0 0 0 000000000000000000000000 0 0 0 0 000000000000000000
consensus : TTTTTAATCT-C-GTC-CAG---T--TTGTTTCC-A-----GTCTTG-TCC-ATGA--GC-ATGAT-CCGGC-C------NTTC-TCATCTC-CAAC--CCAA-AC-TTT--GT------CTNCAGAT-G--C--A-CAG-GAAATAT--GGCGTGA----A--TTTT-TAG-NGGGCGCNTCGAATTCC-AGG--CATTTTACAGG--AGAACC----AATA-GAA-AT---ATC-TTTT----GACACGT---T---AAG-T-----TTTTT--GA-AA--T---T--T----G---T---TTTGGTTTTTC-----ATGCGTAGA--TTTC--TTCGGCC---ATACTTA----G-TTT----C--CAAA------CA--GC-TTCAT--G--ACCG-CG-TCCTTGT-TGA-TGG-TTTCTG-GTTG-GTTA-CT-G-AGG-ATTTTC-T-ATGCTT---G-GTAA--TTC-AG-G-CTCC--GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGCNA-GCT-TTCTCG-TA----CGGTCC-TTTTTCTTCA-TCTTC--AA-AC--CCGT-C-G---ATGAAATC-TTCATAGCTG--GAT-ATAAAACGAGATATA-ATGG-CTG-T-TTGA-TTTTCGAAT-TCCT--CATCC-TGGAT--ATTTG-TCGCCGA-TAT---C--A-----------AGA-T---CTC-CGA-GTTTTT---CCT--GGA-GAATGGC-GT--CTA-CTAAATCCTT-AAT-CTGTTTTGCATCC---TC-CGCA-G-TCGTCT--C---CT-TATC-GTCG--G-TTCTTTT---CTCCTTGGACTTTGTTCTCTTGGTCAGG-ATAATTT-CTTTTAA--G-CGGTCAC-GC-AG-CTT--T-GGAGA-A-TATT-CTT-TTTC-GCG-TTTTGA---ATCTTG-TC-TCT-GC--G-GG--TT---TC--TC-G-TGTC-TTT-CA--A---TGTG-TCCTC-AATG-TTCTTGAAATG-TGTG--GC-C---TTTNATG-------TTTTC-TTTC-ATACA-TCTG-A-TGC-A-GA---C-GG-AAGC-TTG--CA--TTCC-TGA-CACGCCAT--TTC--GTA-A---AG-GAATTCT-GGAT-GGA-GTG---G-A------GGTGTTGACA-GA--T-C---GTG---------T-------GT--NCG-----------TCTCTCTC-CTGNGTAGGG--GACGAT-GACGTG-GGATCCGGTGGCNTTGCTC---TC-TG-GTGTGACG-G-TCCCGG-CATACCTGA-CACA-GGTTGTCGGT-ACA-G-TG---T-TACAGT-A-ATATTC---AG--CGTTCGC-CTC-ACACTG-TGTA-CA-CTCCAC-ATAGT-GCTGG--GCA--A-A-CTTT-ATGT-TCCCGTCT-G--GACATCTG-T--AGATTGTAAAACAAAACGT--TAAA-----AAATCA-CAATAGCAT--GAT-ATATTACAAA-ATATGG-TTNT--TT--GGGGGGTGTAATTTAT---TTCGTCATATNNTNNTTTATCTTAAGNCGCACATATTAAACTGAGAGGNCTGTGCAGATANAATGTGTTTATCCNGATTCAACAAAAATAAAGAAAA-GAA-AAACAAG-------TTTCCA----CA---TGCG-AAATACAAAACGA-AAGTTGAAAATA-AATANTT-TCAAAAACAT------CAAA-ACTTTATCACAAGCNTATTCATCACTCAGTAACAAGTTGNTGTAACATACCTG--CTTGAATACAAAGTGTAA-ACACTCAGCTGCAGT-CCAGTTATGTCGTAA-ATTTGGGTAG-ATCTATATGACAAATTATGGATGA-----CCGGGTAACAGATAGCTCTATGGAACGCCGCC---TATGTAAC-AACATTATATAAATGTGT
Reference ( gi|1 ) : TTTTTAATCT-C-GTC-CAG---T--TTGTTTCC-C-----GTCTTG-TCC-ATGA--GC-ATGAT-CTGGC-C------ATTC-TCATCTC-CAAC--CCAA-ACGTTT--GT------TTCCAGAT-A--C--A-CAG-GAAATCT--GGCGTGA----A--TTTT-TAG-TGAGCGTTTTGAATTCC-AGG--CATTTTACAGG--AGAACC----AATA-ACA-AT---ATC-CTTT----GACACGT---G---AAG-T-----TTTTT--GA-AA--T---T--T----G---T---TTTGGTTTT-------AAACGTAGA--ATTT--TTCGGCC---ATACTTA----G-TTC----C--CAAA------CA--GC-TTCAT--G--ACCC-CG-TCCTTGT-TGA-TGG-TTTCTG-GTTG-GTTA-CT-G-AGG-ATTTTC-T-ATGC-T---G-GTAA--TTC-AG-G-CTCC--TA-AACTTCAGA-TGGAGGATTTC-ATTT--CGCAGCGCAA-GCT-TTCTCG-TA----CGGTCC-TTTTTCTTCG-TCTTC--AA-AC--CCGT-C-A---ATGAAATC-TTCATAGTTG--GAT-ATAAAACGAGA-ATA-ATGA-CTG-T-TTGA-TTTTCGAA--TCCT--CATCT-TGGA---ATTTT-TCGCCGA-TAT---T--A-----------AGC-T---CTC-CGA-GTTTTT---CCT--CGA-GAATGGC-GT--CTA-CTAAATCCTT-AAT-CTGTTTGGCATCT---TC-CGCA-G-TCGTCT--C---CT-TATC-GTC---G-TTCTTTT---CTCCTTGGACTTTGTTCTCTTGGTC-G--ATAATTT-C-TTTAA--G-CGG-CAC-GC-AG-CTT--T-GGAGG-A-TATT-CTTGTTTC-GCG-TTTTGA---ATCTTG-TC-TCT-GC--A-GG--TT---TC--TC-G-TGTC-TCT-TA--A---TGTGCTCCTT-AATG-CTCTTGGAATG-TATG--AC-C---TTTCGTG-------TTTTC-TTTC-ATGCA-TCTA-A-TGC-A-GA---T-AG-AAGC-TTG--CA--TTCC-TGA-CAC-CCAT--TCT--ATA-A---AG-TAATTC--GGAT-GGA-GTG---GAA------AGTGTTGACA-GA--T-C---GTG---------T-------GT--GT------------TCTCT-TC-CTGGGTAGGG--GAC-AT-GACGTGCGGA-CTGGTGGCTTTG--C---T--TG-GTGTGAC--G-TCCCGG-CATGCCTGG-CACAGGGTTGT-GGTAACA-G-TG---T-TACAG--A-ATATTC---AG--CGTTCGC-CTC-ACACTG-TGTATCA-CTCCAC-ATAGT-GCTGG--GC---A-A-CTTT-ATGT-CCCCGTCT-G--GACATCTG-T--AGATTGTAAAACAAAACATTTTAAA-----AAATCA-CAATAGCAT--GAT-ATATTACAAAGATATGG-TTCT--TTGGGGGGGGTGTAATATAT---TTCTTCATATATTCA-TTATCTTAAATTGCACATAATACACTGAGAGGACTGTGCAGATAAAATGTGTTTATCCTGATTTAGTAAAAATATAGAAAA-GAACAAACAAG-------TTCTCA----CA---TACATAAGTAGCAAACGAGAAGTTGAAAATAGAATATTTATTAAAAACAT------CAAA-ATTTTATCACAAATATATTCATAACGC----ACAAGTTGATGTAACATACCTGGCCTTGAATCCAAAG-GTAAGACACCCAGCTGCAGTCCCAGTT-TGTCGTAACATTTGGGTAGAATCTAGA--AC-AATTTTTGATGACACACCCCGGTAACAAATAGATCTATGGAACGCTGCTTGGTAT-TAACAAACA-TATATAAATGTGTA
gi|2 : TTGTTAATCT-CCGTC-CAG---TATTTGTTTCCAT-----GACT-G-TCA-A-GATAGC-A-GATTCTGGC-C------TTTCACCATTTCTCAACAGCCAATATCTTT--GTCGTGTGTATCAGAT-TGTC--ATCAGTGAAATATTCGGAA-GA----A--GATT-CA------CGTC---GATTCC-GAGATCATTTTACCGGTTCTAACCTTTAAGTA-TGA-GT---TTC-ATCTCCCGGACACGTTTCG---TAT-T-----TTTTTTTGG-AA--TATTT--T----G---T---TCCGGTTTTTCATATGGGGCGTAGATTATTTCTTTCGGCAGGAATTCTTA----G-TTT----TTTCAAG------CA--GC-TTCAT--GTTACCCGCGGTCCTTGT-TGAGTGG-TTC--G-GTTG-GTGATCT-GTAGGTATTTTCAT-ATGC-TT--GTGTAAATTTCTAGTGTCTCG--TT-AACTTCAGACTGGATGATTTCTATTTTTCGCAG-GCAACGCT-TTCTTG-TAATGGTGGT---TTTTTCTTCAATCTTTCAAA-AC--CCCT-CGA---ATAAAATC-TTCATAGCTG--GAA-ATAAAGCGAGATATG-ATGC-CTGTT-TTGA-TTTCGAAA--TTCTTACACCGATGGC---ATTTTGTCG-CGA-TTT---T--ATAATTGTTTCTAGT-TATCCTT-CGATGTTTTC---GCT--GGA-GAGTGGT-TTTGCTAGCTAAATCCTTAAAT-TTGTTTTGCATCC---TC-TGTATA-TTGTTT--CGCTTT-TACT-GTCTGTG-TTTTTTTTTCTTCCTTGATCTTTGTTCTC-TGGTCAG--ATCA-TT-C-TTTAAGGG-CGT-CACTGCTAG-CTTTGT-GGAGA-A-AGTTGCATTTTTC-GCG--TTTGAAATATTTTG-TCTTCT-GC--A-GGGTTT---TCTTTC-G-TGTTGTCT-TGTCA---TGTGTTCCTC--ATGTTTTTTCTAATG-TGTGGTAC-TTTATTTGGTT-------TTTTCTTTTC-ATGCA-TCTG-A-TGC-A-GAC--C-GG-AAGCTTTG--CA--TTCC-TGA-CAC-
gi|11 : ttctgatttattctagttgtcggtcttcctttcggattgttgtactttatactgttgcttgagcgtcgattgtacagtaaatcaccatcggtaatgtcatccgttgtcttaagataaccgatacattgaaagggacgcatagatggTTTTTAATCTTC-GTTTCAGCT-T--TTGCTTTC-TTCTAGATCTTGATCCTATTA--GCCATAAT-CAGGC-CTCTTTTATTC-ATTTCTC-AAAC--CCAA-ATCTTTTTGT------CTACAGATTA--TTTA-CAG-GAAATCT--GTATTGA----AAATCTT-GAG-AGGACACTTTGAATTCC-AGA--CATTTTACAGG--AGAACC----AATAGATATATG--ATC-TGTT----GACACGA---C---ACG-T-----TTTTTG-GA-AA--T---T--T----GTTCT---TTTGGTTTTTC-----ATGCGTCGA--CTTC--TTTGG-C---ATACTTA----GTTTT----C--CAAA------CATCGC-TTCAT--G--ACCC-GG-TCCTTGT-TGA-TG---TTCGG-TTTGTGTTA-AC-G-AGG-A-TTTC-T-ATGCTT---G-GTAA--TTC--G-G-CTGCTGTA-AACTTCgaaggcgtcatgttcagtattttagagattatttttctggagtgatgtggatcaggttttttcggtttgtttttggtatgtgtttatcgtgtgttctctgttcgtcct
gi|3 : aatttgTTTTAATCT-C-GTC-TAG---T--TTGTTTCC-A-----GCCTTG-TCC-ATGA--GC-ATGAT-CTGGC-C------TTCC-TCATCTC-CAAC--CCAG-AC-TTT--GT------CTGTAGAT-A--C--A-CAG-GAAATAT--GACGTGA----A--TGTT-TTG-AGGGCACATTAAATTCA-AGG--CACTTTACTGG--AGAACC----------------------TTTT----GCCATGT---T---CAG-T-----TTTTT--AA-AAATT---TGCT----G---T---TTTGGTTTTTC-----ATGCGTAGA--TTTC--TTCGGC----ATATTTA----G-TTTT---C--CAAA------CA--GC-TTCAT--G--ACCG-CG-TCCTTGT-TGA-TGA-TTTCTG-GTTG-G-TA-CT-G-AGG-ATTTTC-T-ATGCTT---G-GTAA--TTC-AG-C-CTCT--GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGATA-GC--TTCTCA-TA----CGGCCC-TTTTTCTTTA-TCTTC--AA-AC--CCGTGC-GGTCATGAAATCGTTCATAGCTGCCGAT-ATAAAATGAGATATA-GTGG-CTG-T-TTGATTTTTCGAA--TTCT--CATCT-TGG----ATTTG-TCGCTGA-TAT---TTCA-----------AGA-TG--CTC-CGGTGTTTTTCTGCCTG-CGAGGAATGGCGGT--CCA-CTAAATCCTT-AAT-CTGTTTTGCATCTG--TCTCGCACG-TCGTTTTCC---TT-TAT--GTCG--G-TTCTTTT---CTCCTTGGACTTTGTTCTCTGGTTCAG--ATAATTT-CTTTTAA--G-CGGTCAT-GC-AG-CTTGAT-GGAGGTA-TATTGCTT-TTTC-ACGTTTTTGA---ATCTTG-TC-TCTCGC--G-GG--TTGGCTC--T--G-TGTC-TTT-CA--ATATTGTG-TCCTTCCATGTTTCTTGAAGTGTTGTG--GCGC---TTTTATGTGGGTCTTCTTC-TTGC-ATACATTCTGTA-TGCTA-GATTCT-GGCAAGC-TTGCACA--TTCC-CGACCAC-ACATGGTCC--GTA-AAAGAG-GAATTC--TGGTAGGA-CTG-----------------TGACA-GAG-T-CTCGGTGCTTTGGAGAT-------GTTGGT------------CCTCT-CT-CT-GGTAGGG--GACGATAGACG-GTGTA-TCTGTG--CTTG--C---TC-TT-GT-TGACGGG-TCCCGGACATACCTGACCACA-GGTTGTCGGT-ACA-G-TGTGTT-TACAGT-A-ATATTC---AG--C-TTCGC-CTC-ACATCG-TGTA-CA-CTCCAC-ATA-T-GCTGA--GCA--A-A-CTTT-ATGG-GCCCGTCTCGGTGACATCTG-TTAAGATTGCAAGA
gi|6 : tttgTTTTAATCT-C-GTC-CAG---T--TTGTTTCC-A-----GTCTTG-TCC-ATGA--GC-ATGAT-CCGGC-C------TTTC-TCGTCTC-CAAC--CCAA-AC-TTT--GT------CTACAGAT-C--C--A-CAG-GAAATAT--GACGTAA----A--GTAT-CAA-GGGGTATATCGAATTCC-CGA--CATTTTACAAC--AGAATC----GATG-GAA-ATATGATC-TTTT----GGCACGT-----------TTCTACTTTTT--GA-AA--T---T--T----G---TTGGTTTAGTTTTCC-----ATACGTAGA--TGTT--TTCGG-C---ATACTTA----G-TTTA---C--CAAA------CA--GC-TTCAT--G--ACCCGCG-TCCTTGT-TGA-TGGTTTTCTG-GTTG-G-TA-CT-G-AGG-ATTTTC-T-ATGC-T---T-G-AA--TTC--G-G-CT-C--TATAACTTCAGACTGGAGGA-TTC-ATTT--CGCAGCGCTA-GC--TTCTCG-CA----AGGTCC--TTTTCTTCA-TCTTC--AA-AT--CTGT-C-G---ATGAAATC-TTCATAGTTG--GAT-ATAAAACGCGA-ATA-ATGG--TG-T-TTGA-TTTTCGAAT-TCCT--CATC----GATAGATTTG-TCG-CGA-TAT---C--A-----------AGA-T---C-C-CGA-GGTTTT---CC-----G-GAA-AGT-GT--CTA-CTAAATCCTT-AAT-CTGTTT-GCGTCT---TC-TCCA-G-TCGTCT--C---CT-TAT--GTCG--G-TTCTACT---CTCTT
gi|12 : ctgTTTTAATCTTC-GTC-CAGGTTT--TTGTTTCC-A-----GTCTTG-TCC-ATGA--GC-CCGAT-TTTGC-T------ATTC-TCATCTC-CAAC--CCAA-AC-TTT--GT------TTCCAGAT-A--C--A-CAG-GAAATCT--GGCGTAA----T--TTTT-TAG-TGAGCGTTTTAAATTCC-AAG--CATTTTACAGG--AGAACC----AATA-ACA-AT---ACC-CCTT----GACACGT---G---AAGTT-----TTTTT--GA-AA--T---T--T----G---T---TTTGGTTTTTC-----AAACGTAGA--TTTT--TTCGG-C---ATACTTAC---T-TTT----C--CAAA------CA--GC-TTCAT--G--GCTG-CG-TCCTTTT-TTA-TGA-TTTCTG-GGTG-G-TA-CT-G-AGG-ATTTTC-T-ATGCTT---G-GTAA--gttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtctttcatacagctgatgcaaaccggaagcttgcattcctga
gi|15 : tctgTTTTAATCT-C-GTC-CAG---T--TTGTTTCC-A-----GTCTTG-TCC-ATGA--GC-ATGAT-CTGGC-C------ATTA-TCATCTC-CAAC--CCAA-AC-TTT--GT------TTCCAGAT-A--C--A-CAG-GAAATCT--GGCGTGA----T--TCTT-TAG-TGAGCGTTTTGAATTCC-AGA--CATTTTACAGG--AG
gi|14 : ctgTTGTAATCT-C-GTC-CAGT--T--TTCTTTCC-A-----GTTTTGTTCC-ATGA--GC-ATGAT-CCAGCAC------TTCC-TCATTTC-CTAC--CC-A-AC-TTT--GT------TTACAGAG-G--C--A-CAG-GAAATAT--GTTCT-A----A--TTCTGTA--TCCACACATCGAATT-C-AAA--CATTTTA-AGA--GGAACC-----ACA-GAA-AT---ATC-TCTT----GAGACGT---T---AAT-T-----TTTCC--AATAA--T---T--TTGGGG---G---TTTGGTTTT-------
gi|5 : ctgTTTAATCT-C-GTC-CAG---T--TTGTTTCC-A-----GACTTG-TCA-ATGA--GC-ATGAT-CTGGC-C-------TTCACCATCTC-CAAC--CCAA-AC-TTT--GT------CTACAGAT-G--C--A-CAG-GAAAT-------ACGA----A---------G-TAAACACGTCGA-TTCCGAGA--CATTTTACCGG--CAACCT----AGTA-TAA-GTTTCATC-TTCC----GACACGT---TTCTA---T-----TTTTT--GA-AA--T---T--T----G---T---TCCGGTTTTTC-----ATACGTAGA--TTTC--TTCGGC----ATACTTA----G-TTTT---C--CAAA------CA--GC-TTCAT--G--ACCG-CG-TCCTTGT-TGA-TGG-TTTCTG-GTTG-G-TA-CT-G-AGG-ATTTTC-T-ATGCTT---G-GTAA--TTC-AG-G-CTCT--GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGCAA-GC--TTCTTG-TA----TGGTGG-TTTTTCTTCA-TCTTC--AA-AC--CCCT-C-G---ATAAAATC-TTCATAGCTG--GAA-ATAAAGCGAGATATG-ATGG-CTG-T-TTGA-TTTTCGAAT-TCTT--CATCC-AGGC---ATTTG-TCGCTGA-TATATCT--------------AGA-T---CCT-CGA-GTTTTT---CCT--GGA-GAGTGGT-GT--CTA-CTAAATCCTT-AAT-CTGTTTTGCATCC---TCTCGTA-A-TTGTTT--C---CT-TA-C-GTCG--G-TTTTTTT---CTCCTTGGACTTTGTTCTC-TGGTCAG--ATCATTT-C-TTTAG--G-CGGTCAC-GC-AG-CTT--TGGGAGA-A-TATT-CAT-TTTC-GCG--TTTGA---ATATTG-TC-TCT-GC--AGGG--TT---TC--TCGG-TGTC-TTT-CA--A---TGTG-TCCTC-AATG-TTTCT-AAATG-TGTG--GC-C---TTTATGG-------TTTTC-TTTC-ATGCA-TCTG-A-TGC-A-GAC--C-GG-AAGC-TTG--CA--TTCC-TGA-CACGCCAT--GTC--ATA-A---GA-GAATTCT-GGAT-GGATGTG---ACAGGTTTCGGTGTTTGGA-GG--TAC---GTG---------T-------GT--TC------------TCTCTCTC-CT-AGTAAGG--GACGAT-GACGTG-GGATCTGGAGGCATTACTC---T--TG-CTATGAC--GATCCCGG-CATGCCTGA-CACA-GGTTGTCGGT-TCAGG-TG---T-TACAGT-A-ATATTC---AG--CGTTCGC-CTT-ACACTG-TGTA-CA-CTCCAC-ATAGT-GCTGG--GCA--A-A-CTTT-A
gi|13 : ATCT-C-GTC-CAGC--T--TTCTTTCC-A-----GTTTTG-TCC-ATGA--GC-ATGAT-CC-AC-C-------TTC-CAATTTC-CTA---CCAA-AC-TTT--GT------TTTAAGAG-G--C--A-CAG-GAAATAT------TGATTCTA--TTCTGTAGACCAACATC---GATTCCAAAG--CATTTT-TAAG--AGAACCG---AACA-GAA-AT---ATCTCTTG----GACatttataaaatattgaaaagtatcgtgtatatgtccgtaagtggtcga
gi|4 : tgttgtatGTAGA--TTTC--TTTGGC----ATA-TTA----G-TTTTTATC--CAAA------CA--ACATTCAT--G--ACCC--G-TC-TTGT-TGA-TGG-ATTCTGCGTTT-GTTA--T-G-AGG-ATTTTC-TTATGT-TTTTG-GTAAA-TTC-AG-G-CTCT--GT-AACTTCAGACTGGAGGATTT--ATTT--CGCAGCGCTA-GCT-TCTTCGTTA----C-GTCC--TCTTCTTCA-TCTTC--AACACGGCCGT--------TGAAATC-TTCATAGTTC--GATAAAAAAACGAGA-ACA-ATGGCCTG-T-TT-A-TTTTCGAAT-TCCT--TATC----GACAGATTTG-TCGCTGATTAT---C--A-----------AGA-T----TC-CGA-GTTTTT---TCTGAGGA-GAATGGT-GT--CTA-CTAAGTCCTT-AATACTGTTTGGCATCTTCATC-CACA-G-TCGTCT--C---CTATAT--GTC---GTTTCTTTT---CTCCTCGGACTTTG-TCTC-TGGTC-AGCATAATTT-CTTTTAA--GTTGGTCAC-GC-AGCCTT--T-GCAGA-ATTAT------TTTT-GCA-TTTTG----ATCTTG-TC-TCT-GCCAG-GG--TT---TC--TTGG-TGTT-TTTCCA--A---TGCG-TCCTT-AAT--CTCTTGAAACG-TATG--AC-C----TTCATGGT-----TTTTC-CTTC-ATACA-TCTG-ATTGC-ATAA---C-GG-AAGC--TG--CA--TTCCTTGA-CACGCCAT--TGTTCGTA-A---AGAGAATTCTTGGAT-GGA--TG-----------------TGACA-GGATT-C---GGG---------T-------GT--CTGGAGATATTGCCTCTAT-TC-TTGTATTGGGACGAT-AT---CGTG-GGA-TCTGTGGCGTTGCTC---T--TG-GTGTGACG-G-TCCCGG-CATACCTGA-CACA-GGTTGTCTGT-ACAGG-TG---T-TACAGT-A-ATATTTTCAAG--CGTTCGC-CTC-ACA-TG-TGTA-CATTTCCAC-ATAGTGGCTGG--GCA--A-A-CTTTGATGTGTCCCGTCT-GC-GACATCTGCT--AGATTGTAACA-AAAACGT-----------AAAT----AATTGTA---GAT----TTAC-------TGG-TTATCATT------GGTACAATA-ATGAATTTGTCA-ATTTTGT-TTATTTT--GTCG---AT--TAAAC--AAAGGACTGTGCAAA-ACAA----------CAAA--CAACAACAATGAAGACAA-G---AAACAAG-------TTTACA----CT---TGTGCAAATTTAAAACGA-AAGTTGAAAAT--AACACCT----AAAAC--------CAAACACTTTAggcaagcgtctataacacttaagcgttctttgttatttcataatgt
gi|17 : GTC---ATACCTGTTGTG-CTC----C--CAAAAACATACA--G---TCACTGG--ATCG-CG-TCCTTGTCTGA-TGG-ATTCTG-GTTG-G-TA-CTCG-AGG---TTTC-T-ATGCTT---G-GTAA--TTC-AG-G-CTCgatataagtctcatac
gi|9 : atacttaggtAGA-CTGAGGATTT---TTT--TG----GCAG-GCTACTCT-G-CA----TGGTCCACTTTTCTTTA-TCAT---AA-AC--C-GT-C-A---ATGAA-TC-TTCATA-TTA--GAT-ATAGA--GAGA-ATATATGG-CTG-TCTTGA-TTTTCGAAATTCTT--CATCC-TGGAT--ATTGT---GCTGA-TAT---C--A-----------AGTAT---CTTACGA-GTTTTT---T-T--CTG-GAATGGCCGTA-CTA-CTAA-TCC---AAT-CTGTTTTGCATCC---TCGCGCA-GATCGTCT--C---CT-TATCTGTC---GGTTCTCTT---CTCCTTTGACTT-GTTCTCT--ATC-GG-ATAATTTTC-TTTAA--G-GCG-CA--GCAAG-ATT--T-GGAAG-A-TATT-CTT-TTTCGGCG-TTTTG----ATCTTGTTC-TCT-GC--AGGG--TT---TC--TG-A-TGTC-TTC-AA--A---TGT--TCGTC-AATG-TTTCT-GAATG-TGTG--GC-C---TTT-ATG-------GTTTC-TTTCAATAAA-TCT----TAC-A-GA---C-GG-AAGT-TTG--CAAGTTC---AG-CAC-CCAT--GTC--GTA-A---GA-GAATT-----AT-GTG-ATG---GA-----------TTGACAGGA--T-C---GCG---------TTTTGGAGAT--GTG-----------TCTCT-CCTCTGTGTA-GG--GACGAT-GACGTG-GGATCTGGTGGCTTTG--CCATT--TG-G-GTGAC--G-GTCCGG-CATA-CTGA-CACA-AGTTGTCGGT-ACA-G--GAT-T-TACAGT-ATATATTC---AAGTCGTTCGCGCTCTACACTG-GTTA-CA-CTCCACAATAGT-GCTGGCTGCAATA-A-CTTT-ATG----CCGTCT-A--GACATCTG-T--AAATGGT-CGACAAAAtggtaa
gi|7 : -CTT-TTTC-GCG-GTTTGA---ATCTTG-TC-TCT-GC--ATGG--AT---TC--TC-GGTGTC-TTT-CA--A---TGTG-TCCTT-AATG-CTCTTG-AATG-TATG--AC-C---TT-CATGG------TTTTC-TTTC-ATGCA-TCTA-A-TGC-A-AA---T-AGGAAGA-TTG--CA--TTCC-TGA-CACGCCAT--TTC--GTATG---AG-GAATTCT-GGAT-GGA-GTGACAGGATTC---GGTGTTTGGA-GA--T-----GTG-----------------GT---C------------TCTCTCTC-CTGG-TAGGG--GACGAT-GACGTG-GGATCTGGTGGCTTTG--C---TCTTGTGTGTGAC--GGTCCCGG-CATACCTGA-CACAGG-TTGTCGGTA-CA-GGTG---T-TACAGTAA-ATAT-C---AG--CGTTCGC-CTC-ACACTG-TGTA-CA-CTCCAC-ATAGT-GCTGG--GC---GGA-CTTT-ATGT-CCC-GTCT-G--GACATCTG-T--AGATTGTAAACAAAAAAATTTTAAA-----AA--CA-CAATAGCAT--GATAATATTACAAA-ATATGGTTTCT--TT--AGGGGGTGTGATTTAT---TTCTTCATATAATCATTTATCTTAAAATGCACATATTAAACTGAGAGGTTTGTGCAGATAAAATGTGTTTATCCTGATTCA--AAAAATATAGAAAA-GAACAAACAAA-------TTCCCA----CA---TGCA-AAGTACAAAACGA-AAGTTGAAAATA-AATATTTTTCAAAAACAT------CAAA-ATTTTATCAC-AATCTA-TCAT-ACTC----ACAAGTT-ATGTAACATACCTG--CTTGAATACAAAGTGTAA-ACACTCAGCTGCAGT-CCAGTTATGTCGTAA-ATTTGGGTAG-ATCTATATGACAAATTATGGATGA-----CCGGGTAACAGATAGCTCTATGGAACGCCGCC---TATGTAAC-AACATTATATAAATGTGT
gi|6 : TC-TTTC-ATACA-GCTG-A-TGC-A-AA---CCGG-AAGC-TTG--CA--TTCC-TGA-
gi|8 : ctgttttaatctcgtccagtttgtttccagtcttgtccatgagcatgatccggcctttctcgtctccaacccaaactttgtctacagatccacaggaaatatgacgtaaagtatcaaggggtatatcgaattcccgacattttacaacagaatcgatggaaatatgatcttttggcacgtttctactttttgaaatttgttggtttagttttccatacgtagatgttttcggcatacttagtttaccaaacagcttcatgacccgcgtccttgttgatggttttctggttggtactgaggattttctatgcttgaattcggctctataacttcagactggaggattcatttcgcagcgctagcttctcgcaaggtccttttcttcatcttcaaatctgtcgatgaaatcttcatagttggatataaaacgcgaataatggtgtttgattttcgaattcctcatcgatagatttgtcgcgatatcaagatcccgaggttttccggaaagtgtctactaaatccttaatctgtttgcgtcttctccagtcgtctccttatgtcggttctactctcttgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngC-ATACA-TCTG-A-TGC-A-GA---TCGG-AAGC-TTG--CA--CTCC-TGA-CA
gi|10 : ACA-GGTG---TATACAGT-A-ATAT-C---AG--CGT-CGC-CTC-ACACTGCTGTA-CA-TTCCAC-A-AGT-GCTGG--GC---A-AACT-----AT-TCCCGCCT-G--GA--TCTG-T--AGATTGT-AAACAAAACG---TAAA-----CAATC------AGCATTAAAT-ATTTTAAAAAAAAATTG-Tannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaagtgttacagtaatattcagcgttcgcttcacactgtgtacactccacatagtgctcgccaaactttatatcccgtctggacatctgtagattgtaaacaaaacaaaaaacgtaaataatcaacaaaatatgcattgtagatatatagtatattactatttgtttgattctgcgataaacatcgaactgtgtaagatgagaaggggaaaaacgaaaacaaaaacaaaaaaaaagaagaaaaaaggaagtggtttccattagcaaagtaaagaaataaaacgaaagttgcaaaaaaataattttaaaattatggaattcaaattcatcacaagcaattatcactcagtaacaattgctgtaaaaaaggaaataactataattgacccacgtgaaatttcataaaacaagtatcagtataggcttccgtgtaagtacattcactataccgctatatatagaataaattcccctgccatagctgcacttgacggaaattctgaattgaaatgaaaatatttgccagtatgtagttataaaaaaaaccatacggttacctgcttaactatagattgtcaaattgcagtcggaattcgtcgtcaa
gi|8 : gtA-G-TG---T-TACAGT-A-ATATTC---AG--CGTTCGC-TTC-ACACTG-TGTA-CA-CTCCAC-ATAGT-GCTCG--CCA--A-A-CTTT-ATAT--CCCGTCT-G--GACATCTG-T--AGATTGT-AAACAAAACA----AAAAACGTAAATAATCAACAAAAT---AT-GCATTGTAGATATATAG-Tagatagtactagttattattacaatttgtttaattctcccaaacagaggctagtgcaaactgttacggattttactccgtgcggtatcaaaaaaaaaaaaaaaaaatcgtgcaaagaaacaatctctgcagcaattgcaaaataaaacgccaaaagtgaaacacaaaataatatgattttaaaagatcttttaattttatagccatatttcattcacaagcaaatgtccctcagaagtttattgcttaagaatggatataactgggtatgtaactagaaaatgtgaaattttcatttaagcagtctgctgtatattgtctagaagtatttccgccgggcctgatgctctgtacattaaattagatgagctacttgacagcgaattctgacaaagataggtgaatagaaataaatatatattagtcgagtaacgtagttataaaaaaaattactgcttatagcttaagagacaaaagtgtacaaaattcgccagttggaattagtcgtga
gi|20 : catacatctgatgcagatcggaagcttgcactcctgacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaTACAAA-ATGTGG-TTTC--TTTAGGGGGGTGTAATTTAT---TTCatattactatttgtttgattctgcgataaacatcgaactgtgtaagatgagaaggggaaaaacgaaaacaaaaacaaaaaaaaagaagaaaaaaggaagtggtttccattagcaaagtaaagaaataaaacgaaagttgcaaaaaaataattttaaaattatggaattcaaattcatcacaagcaattatcactcagtaacaattgctgtaaaaaaggaaataactataattgacccacgtgaaatttcataaaacaagtatcagtataggcttccgtgtaagtacattcactataccgctatatatagaataaattcccctgccatagctgcacttgacggaaattctgaattgaaatgaaaatatttgccagtatgtagttataaaaaaaaccatacggttacctgcttaactatagattgtcaaattgcagtcggaattcgtcgtcaa
gi|8 : AAAAACAAAAAAAAAGAAGAAAAAAGGAAGTGGTTTCCATTAGCAAAGTAAAGAAATA--AAACGA-AAGTTGCAAA-AAAATAATT-TTAAAATTATGGAATTCAAA---TTCATCACAAGCA-ATT-ATCACTCAGTAACAA-TTGCTGTAA
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): GTTCTGATTAGCAGGTTGTGGGTCTTCAGTCACTGCGTGGTGTGATTTCGTTGTATGCTGTCATTTGATTCGTCCGATGTACAGATAAATCACCAACCCGAGTACAGACGTGAAGAAGCCGAACATAAAGA
Unaligned ( gi|18 ): GTTCTGATTACAGTTGTGGTCTTCCTTTCTGATGTGTATTTCTTTATACTGTTGTTTGAGCTGTCGATGTACAGTAAATCACCATCGTAAGTCACCGCAAGA
Unaligned ( gi|19 ): CATCGCAAGTCACTGCTTTTTGTGATAACCGTTAAATGAGC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 111111 111 11111 11111 222222222222222222222 11111 333 22222222222222 1111 11111 22222 111111 1111 111111 11 11 1 11111 11111 11 33333333333333 22222222222 11 1 1 111 11 11 222 111 111111 111 1111 11 222 1 1111 22222222 1 1111 2222 222 222222 111 1 333333333333333333 22222 11 11111 11111 444444444444444444444444444444444444444444444444444444444444444444444 22 2 1 1 111 222 11 2222222222222 2222 22222 11111 2222222222 11 11 1111111 11 333333333333333333333333333333 3333333333333 111 22222222222 33333333 111 222222 2222 22222222 111 111 1111 11 33333 22 1 2 2 1 2 2 11 1 55555 333 1 2 1
lowQualScore : 8 4 4 666 55 4 8888 4 4 4 4 4 55 4 44 4 1 4 111111 4 55 4 4 111 00000 55 66666 4 4 0 7 555555555555555555555 666 1 0 8 55 55 77777 22 111 0 4 77777777777777 4 4 4 66 777 66 8888 9999999 4 4 22222 888 5 55555 555555 8888 66 222222 66 4 66 66 4 55 4 4 4 4 4 4 11 4 4 4 4 4 4 66 4 00 88 5 5 77 0 5 77 4 1 5 8 0 1 5 22222 0 55 5 77 3 5 00000 5 77 88 77 0 5 5 5 5 5 4 5 22222222222222 4 77 5 77 77777777777 33 1 0 5 1 555 33 5 2 5 5 33 5 0 5 5 5 777 111 000000 5 999 0 2222 5 88 000 2 2222 3 6 6 11111111 6 6 1 1 5 5 5 8 5 5555 5 5 5 5555 000 222222 5 5 000 1 5 1 5 0 5 7 5 5 333333333333333333 888 4 4 4 4 4 4 55555 4 4 22 4 6 6 77777 6 33333 6 6 222222222222222222222222222222222222222222222222222222222222222222222 2 6 00 6 6 6 6 6 1 2 4 6 1 6 6 6 6 5 5 0 66 333 5 5 3 888 66 5 5 5 5 5 5 5 66 66 5 111 5 33 5 77 0000000000000 2222 1 0 44444 8 77777 88 6 6666666666 11 0 8 3 11 555 6 5555 4444444 88 1 111111111111111111111111111111 8 1 1 2222222222222 3 444 22222222222 55555555 444 8 0 333333 88 8 1 1111 77777777 0 888 444 4444 88 8 11111 6 77 77 3 5 0 0 5 0 0 3 88 5 4 2 00000 2 2 555 5 0 5
lowQualScore : . . . ... .. . .... . . . . . .. . .. . . . ...... . .. . . ... ..... .. ..... . . . . ..................... ... . . . .. .. ..... .. ... . . .............. . . . .. ... .. .... ....... . . ..... ... . ..... ...... .... .. ...... .. . .. .. . .. . . . . . . .. . . . . . . .. . .. .. . . .. . . .. . . . . . . . ..... . .. . .. . . ..... . .. .. .. . . . . . . . . .............. . .. . .. ........... .. . . . . ... .. . . . . .. . . . . . ... ... ...... . ... . .... . .. ... . .... . . . ........ . . . . . . . . . .... . . . .... ... ...... . . ... . . . . . . . . . .................. ... . . . . . . ..... . . .. . . . ..... . ..... . . ..................................................................... . . .. . . . . . . . . . . . . . . . . . .. ... . . . ... .. . . . . . . . .. .. . ... . .. . .. ............. .... . . ..... . ..... .. . .......... .. . . . .. ... . .... ....... .. . .............................. . . . ............. . ... ........... ........ ... . . ...... .. . . .... ........ . ... ... .... .. . ..... . .. .. . . . . . . . . .. . . . ..... . . ... . . .
lowQualScore : 0 0 0 555 55 0 5555 0 0 0 0 0 55 0 55 0 0 0 555555 0 55 0 0 000 00000 00 44444 0 0 6 3 111111111111111111111 777 0 8 0 55 55 44444 66 111 3 4 22222222222222 4 4 4 11 888 11 9999 2222222 4 4 55555 888 0 77777 666666 3333 11 888888 11 4 11 11 4 66 4 4 4 4 4 4 99 4 4 4 4 4 4 11 4 66 22 0 0 00 0 7 99 3 0 7 4 1 7 7 66666 7 99 7 99 0 7 44444 7 99 00 77 1 7 7 7 7 7 0 7 11111111111111 3 99 7 99 11111111111 66 4 1 7 4 777 66 7 3 7 7 66 7 1 7 7 7 111 777 111111 7 666 7 1111 7 77 777 3 7777 2 7 7 22222222 7 7 7 4 7 7 7 4 7 0000 7 7 7 3333 000 444444 7 7 000 4 7 4 7 7 7 1 7 7 666666666666666666 888 4 4 4 4 4 4 33333 4 4 22 4 6 7 33333 7 77777 7 7 000000000000000000000000000000000000000000000000000000000000000000000 5 7 77 7 7 7 0 7 0 5 5 7 0 7 7 7 7 0 0 0 99 888 0 0 2 888 99 0 0 0 0 0 0 0 99 99 0 111 7 66 7 99 8888888888888 4444 0 8 66666 0 88888 88 7 5555555555 00 8 8 2 88 222 5 5555 5555555 00 0 555555555555555555555555555555 2 4 4 0000000000000 2 000 88888888888 44444444 000 0 8 000000 88 0 0 4444 00000000 8 222 000 5555 22 8 55555 5 77 55 0 5 0 0 5 0 0 0 00 5 0 5 00000 5 5 000 0 0 5
consensus : TTTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-ATGATCC-GGC-CTTTC-TCAT------CTC-CAAC--CCAA-A-C---TTTGTC-----TN-CAGAT-G---CA-CAG-GAAATATGGCGTGAA--TTTT-TA----GNGGG--C--GCGTCGAATTCC-AGG--CATTTTACAGG--AGAACC----AATAGAAAT-T-ATCTCTTG-ACACGT---TAAG-T-----TTTT-T-GA-AA--T---T--T----G---T---T-TTGGTT-TTTCAT-----GCGTAGATT---TCTT-CGGCC---ATACTTA----G-TTT----C--CAAA------CA--GC-TTCAT--G--A-CC-GCG-TCCTTGT-TGA-TGG-TTTCTG-GTTG-GTTA-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--TTC-AG-GCT-CT-GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGCNA-GCTTTCTCGT-A----CGGTCC-TTTTTCTTCA-TCTTC--AAACCCGT-CG---A-TGAAATC-TTCATAGCTG--GATATAAAA-CGAGA-TATAATGGC-TG-T-TTGATTTT-CGAA-TTCCT-CATCC--TGG-AT--A--TTTGTCGCCG--AT-AT--CA-----------AG--AT-CTC-CGA-GTTTTTC---CTG--GAG-AATGGC-G-T--CTA-CTAAATCCTT-AAT-CTGTTTTGCATCC-TC---CGCA-G-TCGTCTC---C--T-TATC-GTCGG----TTCTTTTC-TCCTTGGACTTTGTTCTCTTGGTCAGGATAATTTCCTTTAAGC-G-GTCAC-GC-AGC----TT--T-GGAGG-ATATT-C-TT-TTTCG-CGTTTT-GA---ATCTTGT-C-TCT-GCA-G-GGTT---TCTC-G---TGTCTT-TC-AAT---GTG-TCCT-CAATGCT-CTTGA-AATGT-GTGGC-CTTTCAT---G--T-------TTT---CTTTCA-TGCAT-CTG-AT-GC-A-GA-C---GG-AAGC-TTGCA--TTCCT-GACACGC-CAT--T--TCGTA-AA---G-GAATTCT-G-GATGGA-GTG----G-A----GGTGTTGACAG-A---T-CG------TG----T-------GTNTG---------TCTCTCTC-CTG-GTAG-GGGACGAT-GACGTG-GGATCTGGTGGCNTTGCTCT-TG-GTGTGACGG-TCCCGG-CATACCTGAC-ACA-GGTTGTCGGT-ACA-G-TG--T---TACAGTA-A-TATTC---AG--CGTTCGC-CTC-ACACTG-TGTA-CA-CTCCAC-ATAGT-GCTGG--GCA--AACTTT-ATGT-TCCCGTCT-G--GACATCTG-T--AGATTGT----AAA--AC--AAAACG--TTAAAAAATC-AC--AATA-GCAT----GATA-TATTACAAA-ATATGGTTN-T--TT--GGGGGGTGTAAT--TTATTTCTTCATATANTCGTTTATCTTAAATCGCACATATTAAACTGAGAGGNCTGTGCAGA----TA-AAATGTGTTTA-TCC---CGAT-TCAACAAAAATAAAGAAA--------AGAACAAACAAGT---TTCCACA-----TGCA-AAGTA------TAAAACG---A-AAGTTG------AAAATA-A-ATANTT-T-TAAAAACA------TCAAA-ATTTTA---TCACAANCATATTCATCACTCA--AACAAGTTGATGTAACATACCTGGCCTTGAATNCAAAGTGTAAGACACCCAGCTGCAGTCCCAGTTATGTCGTAACATTTGGGTAGAATCTANATGACAAATTNTNGATGACACACCCNGGTAACAGATAGNTCTATGGAACGCCGCCTGGTATGTAACAAACATTATATAAATGTGT
Reference ( family-418 ) : TTTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-ATGATCC-GGC-CNTTC-TCAT------CTC-CAAC--CCAA-A-C---TTTGTC-----TN-CAGAT-G---CA-CAG-GAAATATGGCGTGAA--TTTT-TA----GNGGG--C--GCNTCGAATTCC-AGG--CATTTTACAGG--AGAACC----AATAGAAAT---ATCTTTTG-ACACGT---TAAG-T-----TTTT-T-GA-AA--T---T--T----G---T---T-TTGGTT-TTTCAT-----GCGTAGATT---TCTT-CGGCC---ATACTTA----G-TTT----C--CAAA------CA--GC-TTCAT--G--A-CC-GCG-TCCTTGT-TGA-TGG-TTTCTG-GTTG-GTTA-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--TTC-AG-GCT-CC-GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGCNA-GCTTTCTCGT-A----CGGTCC-TTTTTCTTCA-TCTTC--AAACCCGT-CG---A-TGAAATC-TTCATAGCTG--GATATAAAA-CGAGA-TATAATGGC-TG-T-TTGATTTT-CGAA-TTCCT-CATCC--TGG-AT--A--TTTGTCGCCG--AT-AT--CA-----------AG--AT-CTC-CGA-GTTTTTC---CTG--GAG-AATGGC-G-T--CTA-CTAAATCCTT-AAT-CTGTTTTGCATCC-TC---CGCA-G-TCGTCTC---C--T-TATC-GTCGG----TTCTTTTC-TCCTTGGACTTTGTTCTCTTGGTCAGGATAATTTCTTTTAAGC-G-GTCAC-GC-AGC----TT--T-GGAGA-ATATT-C-TT-TTTCG-CGTTTT-GA---ATCTTGT-C-TCT-GC--G-GGTT---TCTC-G---TGTCTT-TC-AAT---GTG-TCCT-CAATGTT-CTTGA-AATGT-GTGGC-CTTTNAT---G--T-------TTT---CTTTCA-TACAT-CTG-AT-GC-A-GA-C---GG-AAGC-TTGCA--TTCCT-GACACGC-CAT--T--TCGTA-AA---G-GAATTCT-G-GATGGA-GTG----G-A----GGTGTTGACAG-A---T-CG------TG----T-------GTNCG---------TCTCTCTC-CTGNGTAG-GGGACGAT-GACGTG-GGATCCGGTGGCNTTGCTCTCTG-GTGTGACGG-TCCCGG-CATACCTGAC-ACA-GGTTGTCGGT-ACA-G-TG--T---TACAGTA-A-TATTC---AG--CGTTCGC-CTC-ACACTG-TGTA-CA-CTCCAC-ATAGT-GCTGG--GCA--AACTTT-ATGT-TCCCGTCT-G--GACATCTG-T--AGATTGT----AAA--AC--AAAACG--TTAAAAAATC-AC--AATA-GCAT----GATA-TATTACAAA-ATATGGTTN-T--TT--GGGGGGTGTAAT--TTATTTCGTCATATNNTNNTTTATCTTAAGNCGCACATATTAAACTGAGAGGNCTGTGCAGA----TA-NAATGTGTTTA-TCC---NGAT-TCAACAAAAATAAAGAAA--------AGAA-AAACAAGT---TTCCACA-----TGCG-AAATA------CAAAACG---A-AAGTTG------AAAATA-A-ATANTT-T-CAAAAACA------TCAAA-ACTTTA---TCACAAGCNTATTCATCACTCAGTAACAAGTTGNTGTAACATACCTG--CTTGAATACAAAGTGTAA-ACACTCAGCTGCAGT-CCAGTTATGTCGTAA-ATTTGGGTAG-ATCTATATGACAAATTATGGATGA-----CCGGGTAACAGATAGCTCTATGGAACGCCGCC---TATGTAAC-AACATTATATAAATGTGT
gi|1 : TTTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----C-G-TCTTG-T-CC-ATGA--GC-ATGATCT-GGC-CATTC-TCAT------CTC-CAAC--CCAA-A-CG--TTTGTT-----TC-CAGAT-A---CA-CAG-GAAATCTGGCGTGAA--TTTT-TA----GTGAG--C--GTTTTGAATTCC-AGG--CATTTTACAGG--AGAACC----AATAACAAT---ATCCTTTG-ACACGT---GAAG-T-----TTTT-T-GA-AA--T---T--T----G---T---T-TTGGTT-TT--AA-----ACGTAGAAT---TTTT-CGGCC---ATACTTA----G-TTC----C--CAAA------CA--GC-TTCAT--G--A-CC-CCG-TCCTTGT-TGA-TGG-TTTCTG-GTTG-GTTA-CT-G-AGG-ATTTTC-T-ATGC-T--G-GTAA--TTC-AG-GCT-CC-TA-AACTTCAGA-TGGAGGATTTC-ATTT--CGCAGCGCAA-GCTTTCTCGT-A----CGGTCC-TTTTTCTTCG-TCTTC--AAACCCGT-CA---A-TGAAATC-TTCATAGTTG--GATATAAAA-CGAGA--ATAATGAC-TG-T-TTGATTTT-CGAA--TCCT-CATCT--TGG-A---A--TTTTTCGCCG--AT-AT--TA-----------AG--CT-CTC-CGA-GTTTTTC---CTC--GAG-AATGGC-G-T--CTA-CTAAATCCTT-AAT-CTGTTTGGCATCT-TC---CGCA-G-TCGTCTC---C--T-TATC-GTC-G----TTCTTTTC-TCCTTGGACTTTGTTCTCTTGGTC--GATAATTTC-TTTAAGC-G-G-CAC-GC-AGC----TT--T-GGAGG-ATATT-C-TTGTTTCG-CGTTTT-GA---ATCTTGT-C-TCT-GC--A-GGTT---TCTC-G---TGTCTC-TT-AAT---GTGCTCCT-TAATGCT-CTTGG-AATGT-ATGAC-CTTTCGT---G--T-------TTT---CTTTCA-TGCAT-CTA-AT-GC-A-GA-T---AG-AAGC-TTGCA--TTCCT-GACAC-C-CAT--T--CTATA-AA---G-TAATTC--G-GATGGA-GTG----GAA----AGTGTTGACAG-A---T-CG------TG----T-------GTGT----------TCTCT-TC-CTGGGTAG-GGGAC-AT-GACGTGCGGA-CTGGTGGCTTTGCT---TG-GTGTGAC-G-TCCCGG-CATGCCTGGC-ACAGGGTTGT-GGTAACA-G-TG--T---TACAG-A-A-TATTC---AG--CGTTCGC-CTC-ACACTG-TGTATCA-CTCCAC-ATAGT-GCTGG--GC---AACTTT-ATGT-CCCCGTCT-G--GACATCTG-T--AGATTGT----AAA--AC--AAAACATTTTAAAAAATC-AC--AATA-GCAT----GATA-TATTACAAAGATATGGTTC-T--TTGGGGGGGGTGTAAT--ATATTTCTTCATATATTCA-TTATCTTAAATTGCACATAATACACTGAGAGGACTGTGCAGA----TA-AAATGTGTTTA-TCC---TGAT-TTAGTAAAAATATAGAAA--------AGAACAAACAAGT---TCTCACA-----TACATAAGTA------GCAAACG---AGAAGTTG------AAAATAGA-ATATTTAT-TAAAAACA------TCAAA-ATTTTA---TCACAAATATATTCATAACGC----ACAAGTTGATGTAACATACCTGGCCTTGAATCCAAAG-GTAAGACACCCAGCTGCAGTCCCAGTT-TGTCGTAACATTTGGGTAGAATCTAGA--AC-AATTTTTGATGACACACCCCGGTAACAAATAGATCTATGGAACGCTGCTTGGTAT-TAACAAACA-TATATAAATGTGT
gi|10 : GT-ACA-GGTG--TA--TACAGTA-A-TAT-C---AG--CGT-CGC-CTC-ACACTGCTGTA-CA-TTCCAC-A-AGT-GCTGG--GCA--AACT-----AT-TCCCGCCT-G--GA--TCTG-T--AGATTGT-----AA--AC--AAAACG---TAAACAATC--------A-GCAT----TAAA-TATTTTAAA-AAAAAATTG-----T--AGATAGTACTAG--TTAT-------TATTACAATTTGT-TTAATTCTCCC-----AAAC--AGAGGCTAGTGCAAACTGTTACGGAT---TTTACTCCGTGCGGTATCAAAAAAAAAAAAAAAAAATCGTGCAAAG-AAACAA-T---CTCTGCAGCAATTGCA-AAAT--------AAAACGCCAA-AAG-TGAAACACAAAATA-ATATGATT-T-TAAAAG-A------TC-----TTTTAATTTTATAGCCATATT--TCATTCACAAGCAAATa
gi|11 : TTTTTAATCTTC-GTTTCAGCT-T--TTG-CTTTCTTCTA-GATCTTGAT-CCTATTA--GCCATAATCA-GGC-CTCTT-TTATTCATTTCTC-AAAC--CCAA-A-TCTTTTTGTC-----TA-CAGAT-TATTTA-CAG-GAAATCTGTATTGAAAATCTT-GA----GAGGA--C--ACTTTGAATTCC-AGA--CATTTTACAGG--AGAACC----AATAGATATATGATCTGTTG-ACACGA---CACG-T-----TTTT-TGGA-AA--T---T--T----GTTCT---T-TTGGTT-TTTCAT-----GCGTCGACT---TCTT-TGG-C---ATACTTA----GTTTT----C--CAAA------CATCGC-TTCAT--G--A-CC-CGG-TCCTTGT-TGA-TG---TTCGG-TTTGTGTTA-AC-G-AGG-A-TTTC-T-ATGCTT--G-GTAA--TTC--G-GCTGCT-GTAAACTTCgtccctcagaagtttattgcttaagaatggatataactgggtatgtaactagaaaatgtgaaattttcatttaagcagtctgctgtatattgtctagaagtatttccgccgggcctgatgctctgtacattaaattagatgagctacttgacagcgaattctgacaaagataggtgaatagaaataaatatatattagtcgagtaacgtagttataaaaaaaattactgcttatagcttaagagacaaaagtgtacaaaattcgccagttggaattagtcgtga
gi|12 : aatttgTTTTAATCTTC-GTC-CAGGTTT--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-CCGATTT-TGC-TATTC-TCAT------CTC-CAAC--CCAA-A-C---TTTGTT-----TC-CAGAT-A---CA-CAG-GAAATCTGGCGTAAT--TTTT-TA----GTGAG--C--GTTTTAAATTCC-AAG--CATTTTACAGG--AGAACC----AATAACAAT---ACCCCTTG-ACACGT---GAAGTT-----TTTT-T-GA-AA--T---T--T----G---T---T-TTGGTT-TTTCAA-----ACGTAGATT---TTTT-CGG-C---ATACTTAC---T-TTT----C--CAAA------CA--GC-TTCAT--G--G-CT-GCG-TCCTTTT-TTA-TGA-TTTCTG-GGTG-G-TA-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--
gi|13 : tctgATCT-C-GTC-CAGC--T--TTC-TTTCC----A-G-TTTTG-T-CC-ATGA--GC-ATGATCC-A---CCTTC-CAAT------TTC-CTAC--C-AA-A-C---TTTGTT-----TT-AAGAG-G---CA-CAG-GAAATAT----TGA----TTC-TATTCTGTAGA--CCAACATCG-ATTCCAAAG--CATTTT-TAAG--AGAACCG---AACAGAAAT---ATCTCTTG-G-ACGG---CAAG-C-----GTCTAT-AA-CA--C---T--TAAGCG---T---TCTTTGTTATTTCAT-----
gi|14 : tgttgtatTTGTAATCT-C-GTC-CAG---T--TTTCTTTCC----A-G-TTTTG-TTCC-ATGA--GC-ATGATCC-AGCACTTCC-TCAT------TTC-CTAC--CC-A-A-C---TTTGTT-----TA-CAGAG-G---CA-CAG-GAAATATGTTCT-AA--TTCTGTA-----TCCA--C--ACATCGAATT-C-AAA--CATTTTA-AGA--GGAACC-----ACAGAAAT---ATCTCTTG-AGACGT---TAAT-T-----TTTC-C-AATAA--T---T--TTGGGG---G---T-TTGGTT-TTaatgt
gi|15 : ctgTTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-ATGATCT-GGC-CATTA-TCAT------CTC-CAAC--CCAA-A-C---TTTGTT-----TC-CAGAT-A---CA-CAG-GAAATCTGGCGTGAT--TCTT-TA----GTGAG--C--GTTTTGAATTCC-AGA--CATTTTACAGG--AG
gi|17 : ctgGTC---ATACCTGTTGTG-CTC----C--CAAAAACATACA--G---TCACTGG--A-TC-GCG-TCCTTGTCTGA-TGG-ATTCTG-GTTG-GT-A-CTCG-AGG---TTTC-T-ATGCTT--G-GTAA--TTC-AG-GCT-CTGGT-AA
gi|2 : atacttaggtTTGTTAATCT-CCGTC-CAG---TATTTG-TTTCC----ATG-ACT-G-T-CA-A-GATAGC-A-GATTCTGGC-CTTTCACCAT------TTCTCAACAGCCAATATC---TTTGTCGTGTGTATCAGATTGT--CATCAGTGAAATATT-CG-GAA-------------GAAGATTC--ACGTCGA-TTCC-GAGATCATTTTACCGGTTCTAACCTTTAAGTATGAGTTTCATCTCCCGGACACGT---TTCG-TATTTTTTTT-T-GG-AA--TATTT--T----G---T---T-CCGGTT-TTTCATATGGGGCGTAGATTATTTCTTTCGGCAGGAATTCTTA----G-TTT----TTTCAAG------CA--GC-TTCAT--GTTA-CCCGCGGTCCTTGT-TGAGTGG-TTC--G-GTTG-GTGATCT-GTAGGTATTTTCAT-ATGCTT--GTGTAAATTTCTAGTGTC-TC-GTTAACTTCAGACTGGATGATTTCTATTTTTCGCAG-GCAACGCTTTCTTGT-AATGGTGGT---TTTTTCTTCAATCTTTCAAAACCCCT-CG---AATAAAATC-TTCATAGCTG--GAAATAAAG-CGAGA-TATGATGCC-TGTT-TTGATTTC-GAAA-TTCTTACA-CCGATGGCAT-----TTTGTCG-CG--AT-TT--TATAATTGTTTCTAGTTATCCTT-CGATGTTTTCG---CTG--GAG-AGTGGT-T-TTGCTAGCTAAATCCTTAAAT-TTGTTTTGCATCC-TC---TGTATA-TTGTTTCGCTT--T-TACT-GTCTGTGTTTTTTTTTCTTCCTTGATCTTTGTTCTC-TGGTCA-GATCATT--CTTTAAGG-GCGTCACTGCTAGC----TTTGT-GGAGA-AAGTTGCATT-TTTCG-CG-TTT-GAAATATTTTGT-CTTCT-GCA-G-GGTTTTCTTTC-GTGTTGTCTTGTC--AT---GTGTTCCT-C-ATGTT-TTTTCTAATGT-GTGGT-ACTTTATTTGG--T-------TTTTTCTTTTCA-TGCAT-CTG-AT-GC-A-GACC---GG-AAGCTTTGCA--TTCCT-GACACG
gi|20 : ttctgatttattctagttgtcggtcttcctttcggattgttgtactttatactgttgcttgagcgtcgattgtacagtaaatcaccatcggtaatgtcatccgttgtcttaagataaccgatacattgaaagggacgcatagatggTACAAA-ATGTGGTTT-C--TTTAGGGGGGTGTAAT--TTATTTCaaggcgtcatgttcagtattttagagattatttttctggagtgatgtggatcaggttttttcggtttgtttttggtatgtgtttatcgtgtgttctctgttcgtcct
gi|3 : TTTTAATCT-C-GTC-TAG---T--TTG-TTTCC----A-G-CCTTG-T-CC-ATGA--GC-ATGATCT-GGC-CTTCC-TCAT------CTC-CAAC--CCAG-A-C---TTTGTC-----TG-TAGAT-A---CA-CAG-GAAATATGACGTGAA--TGTT-TT----GAGGG--C--ACATTAAATTCA-AGG--CACTTTACTGG--AGAACC-------------------TTTTG-CCATGT---TCAG-T-----TTTT-T-AA-AAATT---TGCT----G---T---T-TTGGTT-TTTCAT-----GCGTAGATT---TCTT-CGGC----ATATTTA----G-TTTT---C--CAAA------CA--GC-TTCAT--G--A-CC-GCG-TCCTTGT-TGA-TGA-TTTCTG-GTTG-GT-A-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--TTC-AG-CCT-CT-GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGATA-GCTT-CTCAT-A----CGGCCC-TTTTTCTTTA-TCTTC--AAACCCGTGCGGTCA-TGAAATCGTTCATAGCTGCCGATATAAAA-TGAGA-TATAGTGGC-TG-T-TTGATTTTTCGAA-TTC-T-CATCT--TGG-AT------TTGTCGCTG--AT-ATTTCA-----------AG--ATGCTC-CGGTGTTTTTCTGCCTGC-GAGGAATGGC-GGT--CCA-CTAAATCCTT-AAT-CTGTTTTGCATCTGTCT--CGCACG-TCGTTTT---CCTT-TAT--GTCGG----TTCTTTTC-TCCTTGGACTTTGTTCTCTGGTTCAG-ATAATTTCTTTTAAGC-G-GTCAT-GC-AGC----TTGAT-GGAGGTATATTGC-TT-TTTCA-CGTTTTTGA---ATCTTGT-C-TCTCGC--G-GGTTGGCTCT--G---TGTCTT-TC-AATATTGTG-TCCTTCCATGTTTCTTGA-AGTGTTGTGGCGCTTTTAT---G--TGGGTCTTCTT---CTTGCA-TACATTCTGTAT-GCTA-GA-TTCTGGCAAGC-TTGCACATTCCC-GAC-CACACATGGT--CCGTA-AAAGAG-GAATTCT-G-GTAGGA-CTG----------------TGACAG-AGTCT-CGGTGCTTTGGAGAT-------GTTGG---------TC-CTCTCTCTG-GTAG-GGGACGATAGACGGT-GTATCTG-TG--CTTGCTCTT---GT-TGACGGGTCCCGGACATACCTGACCACA-GGTTGTCGGT-ACA-G-TG--TGTTTACAGTA-A-TATTC---AG--C-TTCGC-CTC-ACATCG-TGTA-CA-CTCCAC-ATA-T-GCTGA--GCA--AACTTT-ATGG-GCCCGTCTCGGTGACATCTG-TTAAGATTGC----AAG--A
gi|4 : tttgGTAGATT---TCTT-TGGC----ATA-TTA----G-TTTTTATC--CAAA------CA--ACATTCAT--G--A-CC--CG-TC-TTGT-TGA-TGG-ATTCTGCGTTT-GTTA--T-G-AGG-ATTTTC-TTATGTTTTTG-GTAAA-TTC-AG-GCT-CT-GT-AACTTCAGACTGGAGGATTT--ATTT--CGCAGCGCTA-GCTTCTTCGTTA----CG-TCC-TCTT-CTTCA-TCTTC--AACACGGC-CG---T-TGAAATC-TTCATAGTTC--GATAAAAAAACGAGA--ACAATGGCCTG-T-TT-ATTTT-CGAA-TTCCT-TATC-----G-AC--AGATTTGTCGCTG--ATTAT--CA-----------AG--AT--TC-CGA-GTTTTTT---CTGAGGAG-AATGGT-G-T--CTA-CTAAGTCCTT-AATACTGTTTGGCATCT-TCATCCACA-G-TCGTCTC---C--TATAT--GTCGT----TTCTTTTC-TCCTCGGACTTTGT-CTCT-GGTCAGCATAATTTCTTTTAAGTTG-GTCAC-GC-AGCC---TT--T-GCAGA-AT--T-A-TT-TTT-G-CATTTT-GA----TCTTGT-C-TCT-GCCAG-GGTT---TCTT-GG--TGTTTT-TCCAAT---GCG-TCCT-TAAT-CT-CTTGA-AACGT-ATGAC-CTT-CAT---GGTT-------TTT---CCTTCA-TACAT-CTG-ATTGC-ATAA-C---GG-AAGC-T-GCA--TTCCTTGACACGC-CAT--TGTTCGTA-AA---GAGAATTCTTG-GATGGA-----------------TGT-GACAG-GAT-T-CG------GG----T-------GTCTGGAGATATTGCCTCTATT-CT-TGTATTGGGACGAT-ATCGTG-GGATCTG-TGGCGTTGCTCT-TG-GTGTGACGG-TCCCGG-CATACCTGAC-ACA-GGTTGTCTGT-ACAGG-TG--T---TACAGTA-A-TATTTTCAAG--CGTTCGC-CTC-ACA-TG-TGTA-CATTTCCAC-ATAGTGGCTGG--GCA--AACTTTGATGTGTCCCGTCT-GC-GACATCTGCT--AGATTGT----AAC--A---AAAACG--T----AAAT------AATT-GTA-----GAT----TTAC-------TGGTTA-TCATT------GGTACAATAATGAATTTGTCA-AT-TTTGTTTATTTT--GTCG-----ATTAAAC--AAAGGACTGTGCAAA-----A-CAA-----------C---AAA---CAACAACAATGAAGACA--------AG---AAACAAGT---TTACACT-----TGTGCAAATT------TAAAACG---A-AAGTTG------AAAAT--A-ACACCT-----AAAAC--------CAAACACTTTA---
gi|5 : TTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-ACTTG-T-CA-ATGA--GC-ATGATCT-GGC-CTTCA-CCAT------CTC-CAAC--CCAA-A-C---TTTGTC-----TA-CAGAT-G---CA-CAG-GAAATACGAAGTAAA--------------------C--ACGTCG-ATTCCGAGA--CATTTTACCGG--CAACCT----AGTATAAGTTTCATCTTCCG-ACACGTTTCTA---T-----TTTT-T-GA-AA--T---T--T----G---T---T-CCGGTT-TTTCAT-----ACGTAGATT---TCTT-CGG-C---ATACTTA----GTTTT----C--CAAA------CA--GC-TTCAT--G--A-CC-GCG-TCCTTGT-TGA-TGG-TTTCTG-GTTG-G-TA-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--TTC-AG-GCT-CT-GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGCAA-GC-TTCTTGT-A----TGGTGG-TTTTTCTTCA-TCTTC--AAACCCCT-CG---A-TAAAATC-TTCATAGCTG--GAAATAAAG-CGAGA-TATGATGGC-TG-T-TTGATTTT-CGAA-TTCTT-CATCC--AGG--C--A--TTTGTCGCTGATAT-AT--CT-----------AG--AT-CCT-CGA-GTTTTTC---CTG--GAG-AGTGGT-G-T--CTA-CTAAATCCTT-AAT-CTGTTTTGCATCC-TCT--CGTA-A-TTGTTTC---C--T-TA-C-GTCGG----TTTTTTTC-TCCTTGGACTTTGTTCTC-TGGTCA-GATCATTTC-TTTAGGC-G-GTCAC-GC-AGC----TT--TGGGAGA-ATATT-C-AT-TTTCG-CG-TTT-GA---ATATTGT-C-TCT-GCA-G-GGTT---TCTCGG---TGTCTT-TC-AAT---GTG-TCCT-CAATGTT-TCT-A-AATGT-GTGGC-CTTT-ATG--G--T-------TTT---CTTTCA-TGCAT-CTG-AT-GC-A-GACC---GG-AAGC-TTGCA--TTCCT-GACACGC-CAT--G--TCATA-AG---A-GAATTCT-G-GATGGATGTGACA-G-GTTTCGGTGTTTGGAG-G---TACG------TG----T-------GTTC----------TCTCTCTC-CT-AGTAA-GGGACGAT-GACGTG-GGATCTGGAGGCATTACTCT-TG-CTATGACGA-TCCCGG-CATGCCTGAC-ACA-GGTTGTCGGT-TCAGG-TG--T---TACAGTA-A-TATTC---AG--CGTTCGC-CTT-ACACTG-TGTA-CA-CTCCAC-ATAGT-GCTGG--GCA--AACTTT-Agatataagtctcatac
gi|6 : TTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-ATGATCC-GGC-CTTTC-TCGT------CTC-CAAC--CCAA-A-C---TTTGTC-----TA-CAGAT-C---CA-CAG-GAAATATGACGTAAA--GTAT-CA----AGGGG--T--ATATCGAATTCC-CGA--CATTTTACAAC--AGAATC----GATGGAAATATGATCTTTTG-GCACGTTTCTA---C-----TTTT-T-GA-AA--T---T--T----G---TTGGT-TTAGTT-TTCCAT-----ACGTAGATG---TTTT-CGG-C---ATACTTA----G-TTTA---C--CAAA------CA--GC-TTCAT--G--ACCC-GCG-TCCTTGT-TGA-TGGTTTTCTG-GTTG-G-TA-CT-G-AGG-ATTTTC-T-ATGCTT--G---AA--TTC--G-GCT-CT-AT-AACTTCAGACTGGAGGA-TTC-ATTT--CGCAGCGCTA-GC-TTCTCGC-A----AGGTCC--TTTTCTTCA-TCTTC--AAATCTGT-CG---A-TGAAATC-TTCATAGTTG--GATATAAAA-CGCGA--ATAATGG--TG-T-TTGATTTT-CGAA-TTCCT-CATC-----G-ATAGA--TTTGTCG-CG--AT-AT--CA-----------AG--AT-C-C-CGA-GGTTTTC---C-G--GAA-A---GT-G-T--CTA-CTAAATCCTT-AAT-CTG-TTTGCGTCT-TC---TCCA-G-TCGTCTC---C--T-TAT--GTCGG----TTCTACTC-TCTTatttataaaatattgaaaagtatcgtgtatatgtccgtaagtggtcga
gi|6 : ctgT---CTTTCA-TACAG-CTG-AT-GC-A-AA-CC--GG-AAGC-TTGCA--TTCCT-GAgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtctttcatacagctgatgcaaaccggaagcttgcattcctga
gi|7 : ctgttttaatctcgtccagtttgtttccagtcttgtccatgagcatgatccggcctttctcgtctccaacccaaactttgtctacagatccacaggaaatatgacgtaaagtatcaaggggtatatcgaattcccgacattttacaacagaatcgatggaaatatgatcttttggcacgtttctactttttgaaatttgttggtttagttttccatacgtagatgttttcggcatacttagtttaccaaacagcttcatgacccgcgtccttgttgatggttttctggttggtactgaggattttctatgcttgaattcggctctataacttcagactggaggattcatttcgcagcgctagcttctcgcaaggtccttttcttcatcttcaaatctgtcgatgaaatcttcatagttggatataaaacgcgaataatggtgtttgattttcgaattcctcatcgatagatttgtcgcgatatcaagatcccgaggttttccggaaagtgtctactaaatccttaatctgtttgcgtcttctccagtcgtctccttatgtcggttctactctcttgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnng-C-TT-TTTCG-CGGTTT-GA---ATCTTGT-C-TCT-GC--ATGGAT---TCTC-GG--TGTCTT-TC-AAT---GTG-TCCT-TAATGCT-CTTGA-A-TGT-ATGAC-CTT-CAT---GG-T-------TTT---CTTTCA-TGCAT-CTA-AT-GC-A-AA-TA--GG-AAGA-TTGCA--TTCCT-GACACGC-CAT--T--TCGTATGA---G-GAATTCT-G-GATGGA-GTGACAGG-ATTC-GGTGTTTGGAG-A---T--G------TG------------GTC-----------TCTCTCTC-CTG-GTAG-GGGACGAT-GACGTG-GGATCTGGTGGCTTTGCTCT-TGTGTGTGACGG-TCCCGG-CATACCTGAC-ACA-GGTTGTCGGT-ACA-GGTG--T---TACAGTA-AATAT-C---AG--CGTTCGC-CTC-ACACTG-TGTA-CA-CTCCAC-ATAGT-GCTGG--GCG--GACTTT-ATGT--CCCGTCT-G--GACATCTG-T--AGATTGT----AAACAAA--AAAATT--TTAAAAA--C-AC--AATA-GCAT----GATAATATTACAAA-ATATGGTTTCT--TT--AGGGGGTGTGAT--TTATTTCTTCATATAATCATTTATCTTAAAATGCACATATTAAACTGAGAGGTTTGTGCAGA----TA-AAATGTGTTTA-TCC---TGAT-TCAA--AAAATATAGAAA--------AGAACAAACAAAT---TCCCACA-----TGCA-AAGTA------CAAAACG---A-AAGTTG------AAAATA-A-ATATTT-TTCAAAAACA------TCAAA-ATTTTA---TCACAATC-TAT-CAT-ACTCA----CAAGTT-ATGTAACATACCTG--CTTGAATACAAAGTGTAA-ACACTCAGCTGCAGT-CCAGTTATGTCGTAA-ATTTGGGTAG-ATCTATATGACAAATTATGGATGA-----CCGGGTAACAGATAGCTCTATGGAACGCCGCC---TATGTAAC-AACATTATATAAATGTGT
gi|8 : CA-TACAT-CTG-AT-GC-A-GATC---GG-AAGC-TTGCA--CTCCT-GACA
gi|8 : T-ACAAG-TG--T---TACAGTA-A-TATTC---AG--CGTTCGC-TTC-ACACTG-TGTA-CA-CTCCAC-ATAGT-GCTCG--CCA--AACTTT-ATA--TCCCGTCT-G--GACATCTG-T--AGATTGTAAACAAA--ACAAAAAACG---TAAATAATCAACAAAATATGCATTGTAGATA-TAT---AGT-ATATTACTA-T--TT--Gannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaagtgttacagtaatattcagcgttcgcttcacactgtgtacactccacatagtgctcgccaaactttatatcccgtctggacatctgtagattgtaaacaaaacaaaaaacgtaaataatcaacaaaatatgcattgtagatatatagtatattactatttgtttgattctgcgataaacatcgaactgtgtaagatgagaaggggaaaaacgaaaacaaaaacaaaaaaaaagaagaaaaaaggaagtggtttccattagcaaagtaaagaaataaaacgaaagttgcaaaaaaataattttaaaattatggaattcaaattcatcacaagcaattatcactcagtaacaattgctgtaaaaaaggaaataactataattgacccacgtgaaatttcataaaacaagtatcagtataggcttccgtgtaagtacattcactataccgctatatatagaataaattcccctgccatagctgcacttgacggaaattctgaattgaaatgaaaatatttgccagtatgtagttataaaaaaaaccatacggttacctgcttaactatagattgtcaaattgcagtcggaattcgtcgtcaa
gi|8 : catacatctgatgcagatcggaagcttgcactcctgacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAACAAAAAAAAAGAAG--------AAAA-AAGGAAGTGGTTTCCATT-----AGCA-AAGTAAAGAAATAAAACG---A-AAGTTG------CAAAAA-A-ATAATT-T-TAAAATTATGGAATTCAAA---TTCA---TCACAAGCA-ATT-ATCACTCAGTAACAA-TTGCTGTAAtttgattctgcgataaacatcgaactgtgtaagatgagaaggggaaaaacgaaaacaaaaacaaaaaaaaagaagaaaaaaggaagtggtttccattagcaaagtaaagaaataaaacgaaagttgcaaaaaaataattttaaaattatggaattcaaattcatcacaagcaattatcactcagtaacaattgctgtaaaaaaggaaataactataattgacccacgtgaaatttcataaaacaagtatcagtataggcttccgtgtaagtacattcactataccgctatatatagaataaattcccctgccatagctgcacttgacggaaattctgaattgaaatgaaaatatttgccagtatgtagttataaaaaaaaccatacggttacctgcttaactatagattgtcaaattgcagtcggaattcgtcgtcaa
gi|9 : catacatctgatgcagatcggaagcttgcactcctgacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaagtgttacagtaatattcagcgttcgcttcacactgtgtacactccacatagtgctcgccaaactttatatcccgtctggacatctgtagattgtaaacaaaacaaaaaacgtaaataatcaacaaaatatgcattgtagatatatagtatattactatttgtttgattctgcgataaacatcgaactgtgtaagatgagaaggggaaaaacgaaaacaaaAGACTG-AGGATTTT--TTT--GGCAG-GCTA----CTCT-GC-A----TGGTCCACTTTTCTTTA-TCAT---AAACC-GT-CA---A-TGAA-TC-TTCATA-TTA--GATATAGA---GAGAATATA-TGGC-TG-TCTTGATTTT-CGAAATTCTT-CATCC--TGG-AT--A--TT-GT-GCTG--AT-AT--CA-----------AGT-AT-CTTACGA-GTTTTTTT--CTG--GA---ATGGCCG-TA-CTA-CTAA-TCC---AAT-CTGTTTTGCATCC-TCG--CGCA-GATCGTCTC---C--T-TATCTGTCGG----TTCTCTTC-TCCTTTGACTT-GTTCTCT--ATC-GGATAATTTTCTTTAAG-------GC-GC-AGCAAGATT--T-GGAAG-ATATT-C-TT-TTTCGGCGTTTT-GA----TCTTGTTC-TCT-GCA-G-GGTT---TCTG-A---TGTCTT-CA-AAT---GT--TCGT-CAATGTT-TCTGA-A-TGT-GTGGC-CTTT-AT---G--G-------TTT---CTTTCAATAAAT-CT---T-AC-A-GA-C---GG-AAGT-TTGCAAGTTC---AGCAC-C-CAT--G--TCGTA-AG---A-GAATTAT-GTGATGGA-------------------TTGACAGGA---T-CG------CG----TTTTGGAGATGTG---------TCTCTCCT-CTGTGTAG-GG-ACGAT-GACGTG-GGATCTGGTGGCTTTGCCATTTG-G-GTGACGG-T-CCGG-CATA-CTGAC-ACA-AGTTGTCGGT-ACA-G--GATT---TACAGTATA-TATTC---AAGTCGTTCGCGCTCTACACTG-GTTA-CA-CTCCACAATAGT-GCTGGCTGCAATAACTTT-ATG----CCGTCT-A--GACATCTG-T--AAATGGT-----CG--AC--AAAAaaaaggaaataactataattgacccacgtgaaatttcataaaacaagtatcagtataggcttccgtgtaagtacattcactataccgctatatatagaataaattcccctgccatagctgcacttgacggaaattctgaattgaaatgaaaatatttgccagtatgtagttataaaaaaaaccatacggttacctgcttaactatagattgtcaaattgcagtcggaattcgtcgtcaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTTCTGATTAGCAGGTTGTGGGTCTTCAGTCACTGCGTGGTGTGATTTCGTTGTATGCTGTCATTTGATTCGTCCGATGTACAGATAAATCACCAACCCGAGTACAGACGTGAAGAAGCCGAACATAAAGA
Unaligned ( gi|18 ): GTTCTGATTACAGTTGTGGTCTTCCTTTCTGATGTGTATTTCTTTATACTGTTGTTTGAGCTGTCGATGTACAGTAAATCACCATCGTAAGTCACCGCAAGA
Unaligned ( gi|19 ): CATCGCAAGTCACTGCTTTTTGTGATAACCGTTAAATGAGC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 111111 111 11111 11111 222222222222222222222222222 4444444444444444444 22222222222222 1111 11111 22222 222222 1111 111111 1 11 1 11111 11111 11 33333333333333 22222222222 11 1 1 11111 11 1 11 222 111 111 111 1111 11 22 1 1111 1111 11 1 11 1111 222 222222 111 1 11 33333333333 22222 11111 11111 3333333333333333333333333333333333333333333333333333333333333333333333 111 11111111 222 11 11111 33333 11111 11 4444444444 11 11 222222222222222222222 1 1 666666666666666666666666666 2222222 22222222 33333333 222222222 111 222222 1111 22222222 11 111 1 5555 11 1 1 1 1 1 1 11 1 22222 222 1 1 1
lowQualScore : 8 4 4 666 55 4 8888 4 4 4 4 4 55 4 44 4 0 4 111111 4 55 4 4 111 00000 55 66666 4 4 0 7 666666666666666666666666666 0 8 55 55 1111111111111111111 4 77777777777777 4 4 4 66 777 66 8888 9999999 4 4 22222 888 5 55555 000000 3333 66 222222 66 4 66 66 4 55 4 4 4 4 4 4 2 4 4 4 4 4 4 66 4 00 88 5 5 5 5 5 5 77 4 1 5 5 1 5 22222 0 55 5 77 3 5 00000 5 77 88 77 0 5 5 5 5 5 5 55555555555555 4 77 8888 77777777777 33 1 0 5 1 33333 33 5 2 1 33 5 0 5 5 5 777 111 77 000 5 999 0 2222 5 88 66 3 2222 3 6 6 4444 88 6 6 3 1 5 5 5 44 5555 5 5 5 5 0 000 222222 5 5 000 1 5 1 5 0 5 7 5 5 33 77777777777 888 4 4 4 4 4 4 55555 4 4 66 66 4 6 6 77777 11111 6 6 6 3333333333333333333333333333333333333333333333333333333333333333333333 2 6 000 6 6 6 1 99 1 6 6 6 6 5 77777777 5 5 5 3 888 66 5 5 5 5 5 5 5 66 66 5 111 5 33 5 77 33333 2 00000 88888 66 0 88 0 6 6 2222222222 1 99 66 66 11 11 11 666666666666666666666 0 888 3 5 777777777777777777777777777 77 8 1 6666666 0 5 99999999 00000000 8 444444444 444 8 0 333333 88 8 1 2222 77777777 0 33 444 1 66 3 5 8 0000 2 6 77 1 5 5 5 5 5 5 1 88 5 1 1 66666 1 1 000 5 5 5
lowQualScore : . . . ... .. . .... . . . . . .. . .. . . . ...... . .. . . ... ..... .. ..... . . . . ........................... . . .. .. ................... . .............. . . . .. ... .. .... ....... . . ..... ... . ..... ...... .... .. ...... .. . .. .. . .. . . . . . . . . . . . . . .. . .. .. . . . . . . .. . . . . . . ..... . .. . .. . . ..... . .. .. .. . . . . . . . .............. . .. .... ........... .. . . . . ..... .. . . . .. . . . . . ... ... .. ... . ... . .... . .. .. . .... . . . .... .. . . . . . . . .. .... . . . . . ... ...... . . ... . . . . . . . . . .. ........... ... . . . . . . ..... . . .. .. . . . ..... ..... . . . ...................................................................... . . ... . . . . .. . . . . . . ........ . . . . ... .. . . . . . . . .. .. . ... . .. . .. ..... . ..... ..... .. . .. . . . .......... . .. .. .. .. .. .. ..................... . ... . . ........................... .. . . ....... . . ........ ........ . ......... ... . . ...... .. . . .... ........ . .. ... . .. . . . .... . . .. . . . . . . . . .. . . . ..... . . ... . . .
lowQualScore : 0 0 0 555 55 0 5555 0 0 0 0 0 55 0 55 0 3 0 555555 0 55 0 0 000 00000 00 44444 0 0 6 3 222222222222222222222222222 8 0 55 55 8888888888888888888 4 22222222222222 4 4 4 11 888 11 9999 2222222 4 4 55555 888 0 77777 000000 9999 11 888888 11 4 11 11 4 66 4 4 4 4 4 4 8 4 4 4 4 4 4 11 4 66 22 0 0 0 0 0 7 99 3 0 7 4 7 7 66666 7 99 7 99 0 7 44444 7 99 00 77 1 7 7 7 7 7 7 66666666666666 3 99 3333 11111111111 66 4 1 7 4 99999 66 7 3 4 66 7 1 7 7 7 111 777 99 000 7 666 7 1111 7 77 55 5 7777 2 7 7 2222 33 7 7 5 4 7 7 7 11 0000 7 7 7 7 7 000 444444 7 7 000 4 7 4 7 7 7 1 7 7 99 99999999999 888 4 4 4 4 4 4 33333 4 4 11 11 4 6 7 33333 88888 7 7 7 0000000000000000000000000000000000000000000000000000000000000000000000 5 7 222 7 7 7 0 22 0 7 7 7 7 0 88888888 0 0 0 2 888 99 0 0 0 0 0 0 0 99 99 0 111 7 66 7 99 00000 5 44444 22222 66 8 66 8 7 7 8888888888 0 22 66 00 88 66 00 888888888888888888888 6 444 8 4 000000000000000000000000000 00 0 4 0000000 8 0 22222222 22222222 0 666666666 000 0 8 000000 88 0 0 6666 00000000 8 66 000 0 55 2 0 8 5555 5 5 55 0 5 0 0 5 0 5 0 00 5 0 0 00000 0 0 555 0 5 5
consensus : TTTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-ATGATCC-GGC-CTTTC-TCAT------CTC-CAAC--CCAA-A-C---TTTGTC-----TN-CAGAT-G---CA-CAG-GAAATATGGCGTGAA--TTTT-TA----GNGGG--C--GCGTCGAATTCC-AGG--CATTTTACAGG--AGAACC----AATAGA-A-AT-T--ATCTCTTG-ACACGT---TAAG-T-----TTTT-T-GA-AA--T---T--T----G---T---T-TTGGTT-TTTCAT-----GCGTAGATT---TCTT-CGGCC---ATACTTA----G-TTT----C--CAAA------CA--GC-TTCAT--G--A-CC-GCG-TCCTTGT-TGA-TGG-TTTCTG-GTTG-GTTA-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--TTC-AG-G-CT-CT-GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGCNA-GCTTTCTCGT-A----CGGTCC-TTTTTCTTCA-TCTTC--AAACCCGT-CG---A-TGAAATC-TTCATAGCTG--GATATAAAA-CGAGA-TATAATGGC-TG-T-TTGA-TTTTCGAA-TTCCT-CATCC--TGG-AT--A--TTTGTCGCCG--AT-A--TCA-----------AG--AT-CTC-CGA-GTTTTT---C-CTG--GA-GAATGGC-GT--CTA-CTAAATCCTT-AAT-CTGTTTTGCATCC-TC---CGCA-G-TCGTCT--C---CT-TATC-GTCGG----TTCTTTTC-TCCTTGGACTTTGTTCTCTTGGTCA-GATAATTTCCTTTAAGC-G-GTCAC-GC-AGC----TT--T-GGAGG-ATATT-C-TT-TTTCG-CG-TTTTGA---ATCTTGT-C-TCT-GC-AGGGTT---TCTC-G---TGTCTT-TC-AA---TGTG-TCC-TCAATG-CTCTTGA-AATG-TGTGGC-CTTTCAT---G-------TTTT---CTTTCA-TGCA-TCTG-AT-GC-A-GA---C-GG-AAGC-TTG--CA--TTCCT-GACACGC-CAT--T--TCGTA-A---AG-GAATTCT-G-GATGGA-GTG----G-A----GGTGTTGACAG-A--T-C---GTG---------T-------GTNTG---------TCTCTCTC-CT-G-GTAG-GGGACGAT-GACGTG-GGATCTGGTGGCNTTGCTCTTG-GTGTGAC-GGTCCCGG-CATACCTGA-CACA-GGTTGTCGGT-ACA-G-TG---T-TACAGTA-A-TATTC---AG--CGTTCGC-CTC-ACACTG-TGTA-CA-CTCCAC-ATAGT-GCTGG--GCA--AACTTT-ATGT-TCCCGTCT-G--GACATCTG-T--AGATTGTAAA--ACAAAACG--TTAAAAAATCGCAATAGCATGATA-TATTACAAA-ATATG-GTTN-T--TT--GGGGGGTGTAAT--TTATTTCTTCATATATTCGTTTA--TCT----TAA--ATCGCACATAT-TAAACTGAGAGGNCTGTGCAGATAAAATGT---G---TTTA-TCC---CGAT-TCAACAAAAAT-AAAGAAAA-------GAANAAACAA-------GTTTCCAC--G-----TGCA-AAGT------ATAAAACG---A-AAGTTG------AAAATA-A-ATANTT-TT-AAAAACA------TCAAA-ATTTTA---TCACAANCATATTCATCACTC----ACAAGTTGATGTAACATACCTGGCCTTGAATNCAAAGTGTAAGACACCCAGCTGCAGTCCCAGTTATGTCGTAACATTTGGGTAGAATCTANATGACAAATTNTNGATGACACACCCNGGTAACAGATAGNTCTATGGAACGCCGCCTGGTATGTAACAAACATTATATAAATGTGT
Reference ( family-418 ) : TTTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-ATGATCC-GGC-CTTTC-TCAT------CTC-CAAC--CCAA-A-C---TTTGTC-----TN-CAGAT-G---CA-CAG-GAAATATGGCGTGAA--TTTT-TA----GNGGG--C--GCGTCGAATTCC-AGG--CATTTTACAGG--AGAACC----AATAGA-A-AT-T--ATCTCTTG-ACACGT---TAAG-T-----TTTT-T-GA-AA--T---T--T----G---T---T-TTGGTT-TTTCAT-----GCGTAGATT---TCTT-CGGCC---ATACTTA----G-TTT----C--CAAA------CA--GC-TTCAT--G--A-CC-GCG-TCCTTGT-TGA-TGG-TTTCTG-GTTG-GTTA-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--TTC-AG-G-CT-CT-GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGCNA-GCTTTCTCGT-A----CGGTCC-TTTTTCTTCA-TCTTC--AAACCCGT-CG---A-TGAAATC-TTCATAGCTG--GATATAAAA-CGAGA-TATAATGGC-TG-T-TTGA-TTTTCGAA-TTCCT-CATCC--TGG-AT--A--TTTGTCGCCG--AT-A--TCA-----------AG--AT-CTC-CGA-GTTTTT---C-CTG--GA-GAATGGC-GT--CTA-CTAAATCCTT-AAT-CTGTTTTGCATCC-TC---CGCA-G-TCGTCT--C---CT-TATC-GTCGG----TTCTTTTC-TCCTTGGACTTTGTTCTCTTGGTCAGGATAATTTCCTTTAAGC-G-GTCAC-GC-AGC----TT--T-GGAGG-ATATT-C-TT-TTTCG-CG-TTTTGA---ATCTTGT-C-TCT-GC-AGGGTT---TCTC-G---TGTCTT-TC-AA---TGTG-TCC-TCAATG-CTCTTGA-AATG-TGTGGC-CTTTCAT---G-------TTTT---CTTTCA-TGCA-TCTG-AT-GC-A-GA---C-GG-AAGC-TTG--CA--TTCCT-GACACGC-CAT--T--TCGTA-A---AG-GAATTCT-G-GATGGA-GTG----G-A----GGTGTTGACAG-A--T-C---GTG---------T-------GTNTG---------TCTCTCTC-CT-G-GTAG-GGGACGAT-GACGTG-GGATCTGGTGGCNTTGCTCTTG-GTGTGAC-GGTCCCGG-CATACCTGA-CACA-GGTTGTCGGT-ACA-G-TG---T-TACAGTA-A-TATTC---AG--CGTTCGC-CTC-ACACTG-TGTA-CA-CTCCAC-ATAGT-GCTGG--GCA--AACTTT-ATGT-TCCCGTCT-G--GACATCTG-T--AGATTGTAAA--ACAAAACG--TTAAAAAATCACAATAGCATGATA-TATTACAAA-ATATG-GTTN-T--TT--GGGGGGTGTAAT--TTATTTCTTCATATANTCGTTTA--TCT----TAA--ATCGCACATAT-TAAACTGAGAGGNCTGTGCAGATAAAATGT---G---TTTA-TCC---CGAT-TCAACAAAAAT-AAAGAAAA-------GAACAAACAA-------GTTTCCAC--A-----TGCA-AAGT------ATAAAACG---A-AAGTTG------AAAATA-A-ATANTT-TT-AAAAACA------TCAAA-ATTTTA---TCACAANCATATTCATCACTCA--AACAAGTTGATGTAACATACCTGGCCTTGAATNCAAAGTGTAAGACACCCAGCTGCAGTCCCAGTTATGTCGTAACATTTGGGTAGAATCTANATGACAAATTNTNGATGACACACCCNGGTAACAGATAGNTCTATGGAACGCCGCCTGGTATGTAACAAACATTATATAAATGTGT
gi|1 : TTTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----C-G-TCTTG-T-CC-ATGA--GC-ATGATCT-GGC-CATTC-TCAT------CTC-CAAC--CCAA-A-CG--TTTGTT-----TC-CAGAT-A---CA-CAG-GAAATCTGGCGTGAA--TTTT-TA----GTGAG--C--GTTTTGAATTCC-AGG--CATTTTACAGG--AGAACC----AATAAC-A-AT----ATCCTTTG-ACACGT---GAAG-T-----TTTT-T-GA-AA--T---T--T----G---T---T-TTGGTT-TT--AA-----ACGTAGAAT---TTTT-CGGCC---ATACTTA----G-TTC----C--CAAA------CA--GC-TTCAT--G--A-CC-CCG-TCCTTGT-TGA-TGG-TTTCTG-GTTG-GTTA-CT-G-AGG-ATTTTC-T-ATGCT---G-GTAA--TTC-AG-G-CT-CC-TA-AACTTCAGA-TGGAGGATTTC-ATTT--CGCAGCGCAA-GCTTTCTCGT-A----CGGTCC-TTTTTCTTCG-TCTTC--AAACCCGT-CA---A-TGAAATC-TTCATAGTTG--GATATAAAA-CGAGA--ATAATGAC-TG-T-TTGA-TTTTCGAA--TCCT-CATCT--TGG-A---A--TTTTTCGCCG--AT-A--TTA-----------AG--CT-CTC-CGA-GTTTTT---C-CTC--GA-GAATGGC-GT--CTA-CTAAATCCTT-AAT-CTGTTTGGCATCT-TC---CGCA-G-TCGTCT--C---CT-TATC-GTC-G----TTCTTTTC-TCCTTGGACTTTGTTCTCTTGGTC--GATAATTT-CTTTAAGC-G-G-CAC-GC-AGC----TT--T-GGAGG-ATATT-C-TTGTTTCG-CG-TTTTGA---ATCTTGT-C-TCT-GC-A-GGTT---TCTC-G---TGTCTC-TT-AA---TGTGCTCC-TTAATG-CTCTTGG-AATG-TATGAC-CTTTCGT---G-------TTTT---CTTTCA-TGCA-TCTA-AT-GC-A-GA---T-AG-AAGC-TTG--CA--TTCCT-GACAC-C-CAT--T--CTATA-A---AG-TAATTC--G-GATGGA-GTG----GAA----AGTGTTGACAG-A--T-C---GTG---------T-------GTGT----------TCTCT-TC-CTGG-GTAG-GGGAC-AT-GACGTGCGGA-CTGGTGGCTTTG--CTTG-GTGTGAC--GTCCCGG-CATGCCTGG-CACAGGGTTGT-GGTAACA-G-TG---T-TACAG-A-A-TATTC---AG--CGTTCGC-CTC-ACACTG-TGTATCA-CTCCAC-ATAGT-GCTGG--GC---AACTTT-ATGT-CCCCGTCT-G--GACATCTG-T--AGATTGTAAA--ACAAAACATTTTAAAAAATCACAATAGCATGATA-TATTACAAAGATATG-GTTC-T--TTGGGGGGGGTGTAAT--ATATTTCTTCATATATTCA-TTA--TCT----TAA--ATTGCACATAA-TACACTGAGAGGACTGTGCAGATAAAATGT---G---TTTA-TCC---TGAT-TTAGTAAAAAT-ATAGAAAA-------GAACAAACAA-------GTTCTCAC--A-----TACATAAGT------AGCAAACG---AGAAGTTG------AAAATAGA-ATATTTATT-AAAAACA------TCAAA-ATTTTA---TCACAAATATATTCATAACGC----ACAAGTTGATGTAACATACCTGGCCTTGAATCCAAAG-GTAAGACACCCAGCTGCAGTCCCAGTT-TGTCGTAACATTTGGGTAGAATCTAGA--AC-AATTTTTGATGACACACCCCGGTAACAAATAGATCTATGGAACGCTGCTTGGTAT-TAACAAACA-TATATAAATGTGT
gi|10 : GT-ACA-GGTG---TATACAGTA-A-TAT-C---AG--CGT-CGC-CTC-ACACTGCTGTA-CA-TTCCAC-A-AGT-GCTGG--GCA--AACT-----AT-TCCCGCCT-G--GA--TCTG-T--AGATTGT-AA--ACAAAACG---TAAACAATC-----AGCATTAAA-TATTTTAAA-AAAAA-ATTG-----T--AGATAGTACTAG--TTATTATTACA---ATTTGT-------T----TAA--TTCTCCC------AAAC--AGAGGCTAGTGC----AAACTGTTACGGATTTTACTCCGTGCGGTATCAAAAAAAAA-AAAAAAAAATCGTGCAAAGAAACAA--------TCTCTGC--AGCAATTGCA-AA--------ATAAAACGCCAA-AAG-TGAAACACAAAATA-ATATGATT-TT-AAAAG-A------TC-----TTTTAATTTTATAGCCATATT--TCATTC----ACAAGCAAATGTa
gi|11 : TTTTTAATCTTC-GTTTCAGCT-T--TTG-CTTTCTTCTA-GATCTTGAT-CCTATTA--GCCATAATCA-GGC-CTCTT-TTATTCATTTCTC-AAAC--CCAA-A-TCTTTTTGTC-----TA-CAGAT-TATTTA-CAG-GAAATCTGTATTGAAAATCTT-GA----GAGGA--C--ACTTTGAATTCC-AGA--CATTTTACAGG--AGAACC----AATAGATATAT-G--ATCTGTTG-ACACGA---CACG-T-----TTTT-TGGA-AA--T---T--T----GTTCT---T-TTGGTT-TTTCAT-----GCGTCGACT---TCTT-TGG-C---ATACTTA----GTTTT----C--CAAA------CATCGC-TTCAT--G--A-CC-CGG-TCCTTGT-TGA-TG---TTCGG-TTTGTGTTA-AC-G-AGG-A-TTTC-T-ATGCTT--G-GTAA--TTC--G-G-CTGCT-GTAAACTTCccctcagaagtttattgcttaagaatggatataactgggtatgtaactagaaaatgtgaaattttcatttaagcagtctgctgtatattgtctagaagtatttccgccgggcctgatgctctgtacattaaattagatgagctacttgacagcgaattctgacaaagataggtgaatagaaataaatatatattagtcgagtaacgtagttataaaaaaaattactgcttatagcttaagagacaaaagtgtacaaaattcgccagttggaattagtcgtga
gi|12 : aatttgTTTTAATCTTC-GTC-CAGGTTT--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-CCGATTT-TGC-TATTC-TCAT------CTC-CAAC--CCAA-A-C---TTTGTT-----TC-CAGAT-A---CA-CAG-GAAATCTGGCGTAAT--TTTT-TA----GTGAG--C--GTTTTAAATTCC-AAG--CATTTTACAGG--AGAACC----AATAAC-A-A--T--ACCCCTTG-ACACGT---GAAGTT-----TTTT-T-GA-AA--T---T--T----G---T---T-TTGGTT-TTTCAA-----ACGTAGATT---TTTT-CGG-C---ATACTTAC---T-TTT----C--CAAA------CA--GC-TTCAT--G--G-CT-GCG-TCCTTTT-TTA-TGA-TTTCTG-GGTG-G-TA-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--
gi|13 : tctgATCT-C-GTC-CAGC--T--TTC-TTTCC----A-G-TTTTG-T-CC-ATGA--GC-ATGATCC-A---CCTTC-CAAT------TTC-CTA---CCAA-A-C---TTTGTT-----TT-AAGAG-G---CA-CAG-GAAATAT----TGA----TTC-TATTCTGTAGA--CCAACATCG-ATTCCAAAG--CATTTT-TAAG--AGAACCG---AACAGA-A-A--T--ATCTCTTG-G-ACGG---CAAG-C-----GTCTAT-AA-CA--C---T--TAAGCG---T---TCTTTGTTATTTCAT-----
gi|14 : tgttgtatTTGTAATCT-C-GTC-CAG---T--TTTCTTTCC----A-G-TTTTG-TTCC-ATGA--GC-ATGATCC-AGCACTTCC-TCAT------TTC-CTAC--CC-A-A-C---TTTGTT-----TA-CAGAG-G---CA-CAG-GAAATATGTTCT-AA--TTCTGTA-----TCCA--C--ACATCGAATT-C-AAA--CATTTTA-AGA--GGAACC-----ACAGA-A-A--T--ATCTCTTG-AGACGT---TAAT-T-----TTTC-C-AATAA--T---T--TTGGGG---G---T-TTGGTT-TTaatgt
gi|15 : ctgTTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-ATGATCT-GGC-CATTA-TCAT------CTC-CAAC--CCAA-A-C---TTTGTT-----TC-CAGAT-A---CA-CAG-GAAATCTGGCGTGAT--TCTT-TA----GTGAG--C--GTTTTGAATTCC-AGA--CATTTTACAGG--AG
gi|17 : ctgGTC---ATACCTGTTGTG-CTC----C--CAAAAACATACA--G---TCACTGG--A-TC-GCG-TCCTTGTCTGA-TGG-ATTCTG-GTTG-GT-A-CTCG-AGG---TTTC-T-ATGCTT--G-GTAA--TTC-AG-G-CT-CTGGT-AA
gi|2 : atacttaggtTTGTTAATCT-CCGTC-CAG---TATTTG-TTTCC----ATG-ACT-G-T-CA-A-GATAGC-A-GATTCTGGC-CTTTCACCAT------TTCTCAACAGCCAATATC---TTTGTCGTGTGTATCAGATTGT--CATCAGTGAAATATT-CG-GAA-------------GAAGATTC--ACGTCGA-TTCC-GAGATCATTTTACCGGTTCTAACCTTTAAGTATG-A-GT-TTCATCTCCCGGACACGT---TTCG-TATTTTTTTT-T-GG-AA--TATTT--T----G---T---T-CCGGTT-TTTCATATGGGGCGTAGATTATTTCTTTCGGCAGGAATTCTTA----G-TTT----TTTCAAG------CA--GC-TTCAT--GTTA-CCCGCGGTCCTTGT-TGAGTGG-TTC--G-GTTG-GTGATCT-GTAGGTATTTTCAT-ATGCTT--GTGTAAATTTCTAGTGTCT-CG-TT-AACTTCAGACTGGATGATTTCTATTTTTCGCAG-GCAACGCTTTCTTGT-AATGGTGGT---TTTTTCTTCAATCTTTCAAAACCCCT-CG---AATAAAATC-TTCATAGCTG--GAAATAAAG-CGAGA-TATGATGCC-TGTT-TTGA-TTTCGAAA-TTCTTACA-CCGATGGCAT-----TTTGTCG-CG--AT-T--TTATAATTGTTTCTAGTTATCCTT-CGATGTTTTC---G-CTG--GA-GAGTGGT-TTTGCTAGCTAAATCCTTAAAT-TTGTTTTGCATCC-TC---TGTATA-TTGTTT--CGCTTT-TACT-GTCTGTGTTTTTTTTTCTTCCTTGATCTTTGTTCTC-TGGTCA-GATCATT--CTTTAAGG-GCGTCACTGCTAGC----TTTGT-GGAGA-AAGTTGCATT-TTTCG-CG--TTTGAAATATTTTGT-CTTCT-GC-AGGGTTTTCTTTC-GTGTTGTCTTGTC--A---TGTGTTCC-TC-ATG-TTTTTTCTAATG-TGTGGT-ACTTTATTTGG-------TTTTTTCTTTTCA-TGCA-TCTG-AT-GC-A-GAC--C-GG-AAGCTTTG--CA--TTCCT-GACACG
gi|20 : ttctgatttattctagttgtcggtcttcctttcggattgttgtactttatactgttgcttgagcgtcgattgtacagtaaatcaccatcggtaatgtcatccgttgtcttaagataaccgatacattgaaagggacgcatagatggTACAAA-ATGTG-GTTT-C--TTTAGGGGGGTGTAAT--TTATTTCaaggcgtcatgttcagtattttagagattatttttctggagtgatgtggatcaggttttttcggtttgtttttggtatgtgtttatcgtgtgttctctgttcgtcct
gi|3 : TTTTAATCT-C-GTC-TAG---T--TTG-TTTCC----A-G-CCTTG-T-CC-ATGA--GC-ATGATCT-GGC-CTTCC-TCAT------CTC-CAAC--CCAG-A-C---TTTGTC-----TG-TAGAT-A---CA-CAG-GAAATATGACGTGAA--TGTT-TT----GAGGG--C--ACATTAAATTCA-AGG--CACTTTACTGG--AGAACC----------------------TTTTG-CCATGT---TCAG-T-----TTTT-T-AA-AAATT---TGCT----G---T---T-TTGGTT-TTTCAT-----GCGTAGATT---TCTT-CGG-C---ATATTTA----GTTTT----C--CAAA------CA--GC-TTCAT--G--A-CC-GCG-TCCTTGT-TGA-TGA-TTTCTG-GTTG-G-TA-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--TTC-AG-C-CT-CT-GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGATA-GC-TTCTCAT-A----CGGCCC-TTTTTCTTTA-TCTTC--AAACCCGTGCGGTCA-TGAAATCGTTCATAGCTGCCGATATAAAA-TGAGA-TATAGTGGC-TG-T-TTGATTTTTCGAA-TT-CT-CATCT--TGG-----A--TTTGTCGCTG--AT-ATTTCA-----------AG--ATGCTC-CGGTGTTTTTCTGC-CTGC-GAGGAATGGCGGT--CCA-CTAAATCCTT-AAT-CTGTTTTGCATCTGTCT--CGCACG-TCGTTTTCC---TT-TAT--GTCGG----TTCTTTTC-TCCTTGGACTTTGTTCTCTGGTTCA-GATAATTTCTTTTAAGC-G-GTCAT-GC-AGC----TTGAT-GGAGGTATATTGC-TT-TTTCA-CGTTTTTGA---ATCTTGT-C-TCTCGC--GGGTTGGCTCT--G---TGTCTT-TC-AATATTGTG-TCCTTCCATGTTTCTTGA-AGTGTTGTGGCGCTTTTAT---GTGGGTCTTCTT---CTTGCA-TACATTCTGTAT-GCTA-GATTCT-GGCAAGC-TTGCACA--TTCCC-GAC-CACACATGGT--CCGTA-AAAGAG-GAATTCT-G-GTAGGA-CTG----------------TGACAG-AG-T-CTCGGTGCTTTGGAGAT-------GTTGG---------TC-CTCTCTCT-G-GTAG-GGGACGATAGACGGT-GTATCT-GTG--CTTGCTCTT--GT-TGACGGGTCCCGGACATACCTGACCACA-GGTTGTCGGT-ACA-G-TGTGTT-TACAGTA-A-TATTC---AG--C-TTCGC-CTC-ACATCG-TGTA-CA-CTCCAC-ATA-T-GCTGA--GCA--AACTTT-ATGG-GCCCGTCTCGGTGACATCTG-TTAAGATTGCAAG--A
gi|4 : tttgGTAGATT---TCTT-TGGC----ATA-TTA----G-TTTTTATC--CAAA------CA--ACATTCAT--G--A-CC--CG-TC-TTGT-TGA-TGG-ATTCTGCGTTT-GTTA--T-G-AGG-ATTTTC-TTATGTTTTTG-GTAAA-TTC-AG-G-CT-CT-GT-AACTTCAGACTGGAGGATTT--ATTT--CGCAGCGCTA-GCTTCTTCGTTA----CG-TCC-TCTT-CTTCA-TCTTC--AACACGGC-CG---T-TGAAATC-TTCATAGTTC--GATAAAAAAACGAGA--ACAATGGCCTG-T-TT-A-TTTTCGAA-TTCCT-TATC-----G-AC--AGATTTGTCGCTG--ATTA--TCA-----------AG--AT--TC-CGA-GTTTTT---T-CTGAGGA-GAATGGT-GT--CTA-CTAAGTCCTT-AATACTGTTTGGCATCT-TCATCCACA-G-TCGTCT--C---CTATAT--GTCGT----TTCTTTTC-TCCTCGGACTTTGT-CTCT-GGTCAGCATAATTTCTTTTAAGTTG-GTCAC-GC-AGC----CT--T-TGCAG-A-ATT-A-TT-TTT-G-CA-TTTTGA----TCTTGT-C-TCT-GCCAGGGTT---TCTT-GG--TGTTTT-TCCAA---TGCG-TCC-TTAAT--CTCTTGA-AACG-TATGAC-CTT-CAT---GGT-----TTTT---CCTTCA-TACA-TCTG-ATTGC-ATAA---C-GG-AAGC-T-G--CA--TTCCTTGACACGC-CAT--TGTTCGTA-A---AGAGAATTCTTG-GATGGA-----------------TGT-GACAG-GATT-C---GGG---------T-------GTCTGGAGATATTGCCTCTATT-CT-T-GTATTGGGACGAT-ATCGTG-GGATCTG-TGGCGTTGCTCTTG-GTGTGAC-GGTCCCGG-CATACCTGA-CACA-GGTTGTCTGT-ACAGG-TG---T-TACAGTA-A-TATTTTCAAG--CGTTCGC-CTC-ACA-TG-TGTA-CATTTCCAC-ATAGTGGCTGG--GCA--AACTTTGATGTGTCCCGTCT-GC-GACATCTGCT--AGATTGTAAC--A-AAAACG--T----AAAT---AATTGTA-GAT----TTAC-------TG-GTTA-TCATT------GGTACAATAATGAATTTGTCA-AT-TTTGTTTA--TTT----T----GTCG-----AT-TAAAC--AAAGGACTGTGCAAA-ACAA-----------------C---AAA---CAACAACAAT-GAAGACAA-------G---AAACAA-------GTTTACACTTG-----TGCA-AATT-------TAAAACG---A-AAGTTG------AAAAT--A-ACACCT-----AAAAC--------CAAACACTTTA---
gi|5 : TTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-ACTTG-T-CA-ATGA--GC-ATGATCT-GGC-CTTCA-CCAT------CTC-CAAC--CCAA-A-C---TTTGTC-----TA-CAGAT-G---CA-CAG-GAAATACGAAGTAAA--------------------C--ACGTCG-ATTCCGAGA--CATTTTACCGG--CAACCT----AGTATA-A-GT-TTCATCTTCCG-ACACGTTTCTA---T-----TTTT-T-GA-AA--T---T--T----G---T---T-CCGGTT-TTTCAT-----ACGTAGATT---TCTT-CGG-C---ATACTTA----GTTTT----C--CAAA------CA--GC-TTCAT--G--A-CC-GCG-TCCTTGT-TGA-TGG-TTTCTG-GTTG-G-TA-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--TTC-AG-G-CT-CT-GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGCAA-GC-TTCTTGT-A----TGGTGG-TTTTTCTTCA-TCTTC--AAACCCCT-CG---A-TAAAATC-TTCATAGCTG--GAAATAAAG-CGAGA-TATGATGGC-TG-T-TTGA-TTTTCGAA-TTCTT-CATCC--AGG--C--A--TTTGTCGCTGATAT-A--TCT-----------AG--AT-CCT-CGA-GTTTTT---C-CTG--GA-GAGTGGT-GT--CTA-CTAAATCCTT-AAT-CTGTTTTGCATCC-TCT--CGTA-A-TTGTTT--C---CT-TA-C-GTCGG----TTTTTTTC-TCCTTGGACTTTGTTCTC-TGGTCA-GATCATTT-CTTTAGGC-G-GTCAC-GC-AGC----TT--TGGGAGA-ATATT-C-AT-TTTCG-CG--TTTGA---ATATTGT-C-TCT-GC-AGGGTT---TCTCGG---TGTCTT-TC-AA---TGTG-TCC-TCAATG-TTTCT-A-AATG-TGTGGC-CTTT-ATG--G-------TTTT---CTTTCA-TGCA-TCTG-AT-GC-A-GAC--C-GG-AAGC-TTG--CA--TTCCT-GACACGC-CAT--G--TCATA-A---GA-GAATTCT-G-GATGGATGTGACA-G-GTTTCGGTGTTTGGAG-G--TAC---GTG---------T-------GT-TC---------TCTCTCTC-CT-A-GTAA-GGGACGAT-GACGTG-GGATCTGGAGGCATTACTCTTG-CTATGAC-GATCCCGG-CATGCCTGA-CACA-GGTTGTCGGT-TCAGG-TG---T-TACAGTA-A-TATTC---AG--CGTTCGC-CTT-ACACTG-TGTA-CA-CTCCAC-ATAGT-GCTGG--GCA--AACTTT-Agatataagtctcatac
gi|6 : TTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-ATGATCC-GGC-CTTTC-TCGT------CTC-CAAC--CCAA-A-C---TTTGTC-----TA-CAGAT-C---CA-CAG-GAAATATGACGTAAA--GTAT-CA----AGGGG--T--ATATCGAATTCC-CGA--CATTTTACAAC--AGAATC----GATGGA-A-ATATG-ATCTTTTG-GCACGTTTCTA---C-----TTTT-T-GA-AA--T---T--T----G---TTGGT-TTAGTT-TTCCAT-----ACGTAGATG---TTTT-CGG-C---ATACTTA----G-TTTA---C--CAAA------CA--GC-TTCAT--G--ACCC-GCG-TCCTTGT-TGA-TGGTTTTCTG-GTTG-G-TA-CT-G-AGG-ATTTTC-T-ATGCTT--G---AA--TTC--G-G-CT-CT-AT-AACTTCAGACTGGAGGA-TTC-ATTT--CGCAGCGCTA-GC-TTCTCGC-A----AGGTCC--TTTTCTTCA-TCTTC--AAATCTGT-CG---A-TGAAATC-TTCATAGTTG--GATATAAAA-CGCGA--ATAATGG--TG-T-TTGA-TTTTCGAA-TTCCT-CATC-----G-ATAGA--TTTGTCG-CG--AT-A--TCA-----------AG--AT-C-C-CGA-GGTTTT---C-C-G--GA-AA---GT-GT--CTA-CTAAATCCTT-AAT-CTG-TTTGCGTCT-TC---TCCA-G-TCGTCT--C---CT-TAT--GTCGG----TTCTACTC-TCTTatttataaaatattgaaaagtatcgtgtatatgtccgtaagtggtcga
gi|6 : ctgT---CTTTCA-TACA-GCTG-AT-GC-A-AA---CCGG-AAGC-TTG--CA--TTCCT-GAgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtctttcatacagctgatgcaaaccggaagcttgcattcctga
gi|7 : ctgttttaatctcgtccagtttgtttccagtcttgtccatgagcatgatccggcctttctcgtctccaacccaaactttgtctacagatccacaggaaatatgacgtaaagtatcaaggggtatatcgaattcccgacattttacaacagaatcgatggaaatatgatcttttggcacgtttctactttttgaaatttgttggtttagttttccatacgtagatgttttcggcatacttagtttaccaaacagcttcatgacccgcgtccttgttgatggttttctggttggtactgaggattttctatgcttgaattcggctctataacttcagactggaggattcatttcgcagcgctagcttctcgcaaggtccttttcttcatcttcaaatctgtcgatgaaatcttcatagttggatataaaacgcgaataatggtgtttgattttcgaattcctcatcgatagatttgtcgcgatatcaagatcccgaggttttccggaaagtgtctactaaatccttaatctgtttgcgtcttctccagtcgtctccttatgtcggttctactctcttgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnng-C-TT-TTTCG-CG-GTTTGA---ATCTTGT-C-TCT-GC-ATGGAT---TCTC-GG--TGTCTT-TC-AA---TGTG-TCC-TTAATG-CTCTTGA-A-TG-TATGAC-CTT-CAT---GG------TTTT---CTTTCA-TGCA-TCTA-AT-GC-A-AA---TAGG-AAGA-TTG--CA--TTCCT-GACACGC-CAT--T--TCGTATG---AG-GAATTCT-G-GATGGA-GTGACAGG-ATTC-GGTGTTTGGAG-A--T-----GTG-----------------GTCT-----------CTCTCTC-CT-G-GTAG-GGGACGAT-GACGTG-GGATCTGGTGGCTTTGCTCTTGTGTGTGAC-GGTCCCGG-CATACCTGA-CACA-GGTTGTCGGT-ACA-GGTG---T-TACAGTA-AATAT-C---AG--CGTTCGC-CTC-ACACTG-TGTA-CA-CTCCAC-ATAGT-GCTGG--GCG--GACTTT-ATGT--CCCGTCT-G--GACATCTG-T--AGATTGTAAACAAAAAAATT--TTAAAAA--CACAATAGCATGATAATATTACAAA-ATATG-GTTTCT--TT--AGGGGGTGTGAT--TTATTTCTTCATATAATCATTTA--TCT----TAA--AATGCACATAT-TAAACTGAGAGGTTTGTGCAGATAAAATGT---G---TTTA-TCC---TGAT-TCA--AAAAAT-ATAGAAAA-------GAACAAACAA-------ATTCCCAC--A-----TGCA-AAGT------ACAAAACG---A-AAGTTG------AAAATA-A-ATATTT-TTCAAAAACA------TCAAA-ATTTTA---TCACAATC-TA-TCAT-ACTC----ACAAGTT-ATGTAACATACCTG--CTTGAATACAAAGTGTAA-ACACTCAGCTGCAGT-CCAGTTATGTCGTAA-ATTTGGGTAG-ATCTATATGACAAATTATGGATGA-----CCGGGTAACAGATAGCTCTATGGAACGCCGCC---TATGTAAC-AACATTATATAAATGTGT
gi|8 : CA-TACA-TCTG-AT-GC-A-GAT--C-GG-AAGC-TTG--CA--CTCCT-GACA
gi|8 : T-ACAAG-TG---T-TACAGTA-A-TATTC---AG--CGTTCGC-TTC-ACACTG-TGTA-CA-CTCCAC-ATAGT-GCTCG--CCA--AACTTT-ATA--TCCCGTCT-G--GACATCTG-T--AGATTGT-AA--ACAAAAC-----AAAAAA-CGTAA----ATAAT--CA--ACAAA-ATATGCATTG-T-------AGATATATAGT--ATATTAC------TATTTGTTTGATTCTGCGATAAACATCGAAC-TGTGTAAGATGAGAAGG------GGA-AAAA---------------------CGA---AAACAAAAACAAAAAAAAA-------GAAGAAAAAAGGAAGTGGTTTCCAT--T-----AGCA-AAGTAAAGAAATAAAACG---A-AAGTTG------CAAAAA-A-ATAATT-TT-AAAATTATGGAATTCAAA---TTCA---TCACAAGCA-ATT-ATCACTCAGTAACAA-TTGCTGTAAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaagtgttacagtaatattcagcgttcgcttcacactgtgtacactccacatagtgctcgccaaactttatatcccgtctggacatctgtagattgtaaacaaaacaaaaaacgtaaataatcaacaaaatatgcattgtagatatatagtatattactatttgtttgattctgcgataaacatcgaactgtgtaagatgagaaggggaaaaacgaaaacaaaaacaaaaaaaaagaagaaaaaaggaagtggtttccattagcaaagtaaagaaataaaacgaaagttgcaaaaaaataattttaaaattatggaattcaaattcatcacaagcaattatcactcagtaacaattgctgtaaaaaaggaaataactataattgacccacgtgaaatttcataaaacaagtatcagtataggcttccgtgtaagtacattcactataccgctatatatagaataaattcccctgccatagctgcacttgacggaaattctgaattgaaatgaaaatatttgccagtatgtagttataaaaaaaaccatacggttacctgcttaactatagattgtcaaattgcagtcggaattcgtcgtcaa
gi|9 : catacatctgatgcagatcggaagcttgcactcctgacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGACTG-AGGATTTT--TTT--GGCAG-GCTA----CTCT-GC-A----TGGTCCACTTTTCTTTA-TCAT---AAACC-GT-CA---A-TGAA-TC-TTCATA-TTA--GATATAGA---GAGAATATA-TGGC-TG-TCTTGA-TTTTCGAAATTCTT-CATCC--TGG-AT--A--TT-GT-GCTG--AT-A--TCA-----------AGT-AT-CTTACGA-GTTTTT---TTCTG--GA---ATGGCCGTA-CTA-CTAA-TCC---AAT-CTGTTTTGCATCC-TCG--CGCA-GATCGTCT--C---CT-TATCTGTCGG----TTCTCTTC-TCCTTTGACTT-GTTCTCT--ATC-GGATAATTTTCTTTAAG-------GC-GC-AGCAAGATT--T-GGAAG-ATATT-C-TT-TTTCGGCG-TTTTGA----TCTTGTTC-TCT-GC-AGGGTT---TCTG-A---TGTCTT-CA-AA---TGT--TCG-TCAATG-TTTCTGA-A-TG-TGTGGC-CTTT-AT---G-------GTTT---CTTTCAATAAA-TCT---T-AC-A-GA---C-GG-AAGT-TTG--CAAGTTC---AGCAC-C-CAT--G--TCGTA-A---GA-GAATTAT-GTGATGGA-------------------TTGACAGGA--T-C---GCG---------TTTTGGAGATGTG---------TCTCTCCT-CT-GTGTAG-GG-ACGAT-GACGTG-GGATCTGGTGGCTTTGCCATTT-GGGTGAC-GGT-CCGG-CATA-CTGA-CACA-AGTTGTCGGT-ACA-G--GAT-T-TACAGTATA-TATTC---AAGTCGTTCGCGCTCTACACTG-GTTA-CA-CTCCACAATAGT-GCTGGCTGCAATAACTTT-ATG----CCGTCT-A--GACATCTG-T--AAATGGT-CG--ACAAAAaaaaggaaataactataattgacccacgtgaaatttcataaaacaagtatcagtataggcttccgtgtaagtacattcactataccgctatatatagaataaattcccctgccatagctgcacttgacggaaattctgaattgaaatgaaaatatttgccagtatgtagttataaaaaaaaccatacggttacctgcttaactatagattgtcaaattgcagtcggaattcgtcgtcaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTTCTGATTAGCAGGTTGTGGGTCTTCAGTCACTGCGTGGTGTGATTTCGTTGTATGCTGTCATTTGATTCGTCCGATGTACAGATAAATCACCAACCCGAGTACAGACGTGAAGAAGCCGAACATAAAGA
Unaligned ( gi|18 ): GTTCTGATTACAGTTGTGGTCTTCCTTTCTGATGTGTATTTCTTTATACTGTTGTTTGAGCTGTCGATGTACAGTAAATCACCATCGTAAGTCACCGCAAGA
Unaligned ( gi|19 ): CATCGCAAGTCACTGCTTTTTGTGATAACCGTTAAATGAGC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 111111 111 11111 11111 222222222222222222222222222 4444444444444444444 22222222222222 1111 11111 22222 222222 1111 111111 1 11 1 11111 11111 11 33333333333333 22222222222 11 1 1 11111 11 1 11 222 111 111 111 1111 11 1 1111 1111 11 1 11 1111 222 222222 111 1 11 33333333333 22222 11111 11111 3333333333333333333333333333333333333333333333333333333333333333333333 111 1 111111 222 11 11111 33333 222222 11 333333333 11 11 222222222222222222222 1 1 666666666666666666666666666 2222222 22222222 33333333 222222222 111 222222 1111 22222222 11 111 1 2222 11 1 1 1 1 1 1 11 1 22222 222 1 1 1
lowQualScore : 8 4 4 666 55 4 8888 4 4 4 4 4 55 4 44 4 0 4 111111 4 55 4 4 111 00000 55 66666 4 4 0 7 666666666666666666666666666 0 8 55 55 1111111111111111111 4 77777777777777 4 4 4 66 777 66 8888 9999999 4 4 22222 888 5 55555 000000 3333 66 222222 66 4 66 66 4 55 4 4 4 4 4 4 2 4 4 4 4 4 4 66 4 00 88 5 5 5 5 5 5 77 4 1 5 5 1 5 22222 0 55 5 77 3 5 00000 5 77 88 77 0 5 5 5 5 5 5 55555555555555 4 77 8888 77777777777 33 1 0 5 1 33333 33 5 2 1 33 5 0 5 5 5 777 111 77 000 5 999 0 2222 5 88 1 6 3 2222 3 6 6 4444 88 6 6 3 1 5 5 5 44 5555 5 5 5 5 0 000 222222 5 5 000 1 5 1 5 0 5 7 5 5 33 77777777777 888 4 4 4 4 4 4 55555 4 4 66 66 4 6 6 77777 11111 6 6 6 3333333333333333333333333333333333333333333333333333333333333333333333 2 6 000 6 6 6 1 99 1 6 6 6 6 5 0 777777 5 5 5 3 888 66 5 5 5 5 5 5 5 66 66 5 111 5 33 5 77 33333 2 00000 1 66 000000 88 0 6 6 555555555 333 99 66 66 0 11 11 666666666666666666666 0 888 3 5 777777777777777777777777777 77 8 1 6666666 0 3 99999999 55555555 8 444444444 444 8 0 333333 88 8 1 2222 77777777 0 33 444 1 66 3 5 8 1111 2 6 77 1 5 5 5 5 5 5 1 88 5 1 1 66666 1 1 000 5 5 5
lowQualScore : . . . ... .. . .... . . . . . .. . .. . . . ...... . .. . . ... ..... .. ..... . . . . ........................... . . .. .. ................... . .............. . . . .. ... .. .... ....... . . ..... ... . ..... ...... .... .. ...... .. . .. .. . .. . . . . . . . . . . . . . .. . .. .. . . . . . . .. . . . . . . ..... . .. . .. . . ..... . .. .. .. . . . . . . . .............. . .. .... ........... .. . . . . ..... .. . . . .. . . . . . ... ... .. ... . ... . .... . .. . . . .... . . . .... .. . . . . . . . .. .... . . . . . ... ...... . . ... . . . . . . . . . .. ........... ... . . . . . . ..... . . .. .. . . . ..... ..... . . . ...................................................................... . . ... . . . . .. . . . . . . . ...... . . . . ... .. . . . . . . . .. .. . ... . .. . .. ..... . ..... . .. ...... .. . . . ......... ... .. .. .. . .. .. ..................... . ... . . ........................... .. . . ....... . . ........ ........ . ......... ... . . ...... .. . . .... ........ . .. ... . .. . . . .... . . .. . . . . . . . . .. . . . ..... . . ... . . .
lowQualScore : 0 0 0 555 55 0 5555 0 0 0 0 0 55 0 55 0 3 0 555555 0 55 0 0 000 00000 00 44444 0 0 6 3 222222222222222222222222222 8 0 55 55 8888888888888888888 4 22222222222222 4 4 4 11 888 11 9999 2222222 4 4 55555 888 0 77777 000000 9999 11 888888 11 4 11 11 4 66 4 4 4 4 4 4 8 4 4 4 4 4 4 11 4 66 22 0 0 0 0 0 7 99 3 0 7 4 7 7 66666 7 99 7 99 0 7 44444 7 99 00 77 1 7 7 7 7 7 7 66666666666666 3 99 3333 11111111111 66 4 1 7 4 99999 66 7 3 4 66 7 1 7 7 7 111 777 99 000 7 666 7 1111 7 77 7 7 5 7777 2 7 7 2222 33 7 7 5 4 7 7 7 11 0000 7 7 7 7 7 000 444444 7 7 000 4 7 4 7 7 7 1 7 7 99 99999999999 888 4 4 4 4 4 4 33333 4 4 11 11 4 6 7 33333 88888 7 7 7 0000000000000000000000000000000000000000000000000000000000000000000000 5 7 222 7 7 7 0 22 0 7 7 7 7 0 0 888888 0 0 0 2 888 99 0 0 0 0 0 0 0 99 99 0 111 7 66 7 99 00000 5 44444 0 44 222222 66 8 7 7 000000000 000 22 66 00 8 66 00 888888888888888888888 6 444 8 4 000000000000000000000000000 00 0 4 0000000 8 8 22222222 66666666 0 666666666 000 0 8 000000 88 0 0 6666 00000000 8 66 000 0 55 2 0 8 2222 5 5 55 0 5 0 0 5 0 5 0 00 5 0 0 00000 0 0 555 0 5 5
consensus : TTTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-ATGATCC-GGC-CTTTC-TCAT------CTC-CAAC--CCAA-A-C---TTTGTC-----TN-CAGAT-G---CA-CAG-GAAATATGGCGTGAA--TTTT-TA----GNGGG--C--GCGTCGAATTCC-AGG--CATTTTACAGG--AGAACC----AATAGA-A-AT-T--ATCTCTTG-ACACGT---TAAG-T-----TTTT-T-GA-AA--T---T--T----G---T---T-TTGGTT-TTTCAT-----GCGTAGATT---TCTT-CGGCC---ATACTTA----G-TTT----C--CAAA------CA--GC-TTCAT--G--A-CC-GCG-TCCTTGT-TGA-TGG-TTTCTG-GTTG-GTTA-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--TTC-AG-G-CT-CT-GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGCNA-GCTTTCTCGT-A----CGGTCC-TTTTTCTTCA-TCTTC--AAACCCGT-CG---A-TGAAATC-TTCATAGCTG--GATATAAAA-CGAGA-TATAATGGC-TG-T-TTGA-TTTTCGAA-TTCCT-CATCC--TGG-AT--A--TTTGTCGCCG--AT-A--TCA-----------AG--AT-CTC-CGA-GTTTTT---C-CTG--GA-GAATGGC-GT--CTA-CTAAATCCTT-AAT-CTGTTTTGCATCC-TC---CGCA-G-TCGTCT--C---CT-TATC-GTCGG----TTCTTTTC-TCCTTGGACTTTGTTCTCTTGGTCAG-ATAATTTCCTTTAAGC-G-GTCAC-GC-AGC----TT--T-GGAGG-ATATT-C-TT-TTTCG-CG-TTTTGA---ATCTTGT-C-TCT-GC-AGGGTT---TCTC-G---TGTCTT-TC-AA---TGTG-TCC-TCAATG-CTCTTGA-AATG-TGTGGC-CTTTCAT---G-------TTTT---CTTTCA-TGCA-TCTG-AT-GC-A-GA---C-GG-AAGC-TTG--CA--TTCCT-GACACGC-CAT--T--TCGTA-A---AG-GAATTCT-G-GATGGA-GTG----G-A----GGTGTTGACAG-A--T-C---GTG---------T-------GTNTG---------TCTCTCTC-CT-G-GTAG-GGGACGAT-GACGTG-GGATCTGGTGGCNTTGCTCTTG-GTGTGAC-GGTCCCGG-CATACCTGA-CACA-GGTTGTCGGT-ACA-GGTG---T-TACAGTA-A-TATTC---AG--CGTTCGC-CTC-ACACTG-TGTA-CACT-CCAC-ATAGTG-CTGG--GCA--AACTTT-ATGT-TCCCGTCT-G--GACATCTG-T--AGATTGTAAA--ACAAAACG--TTAAAAAATCGCAATAGCATGATA-TATTACAAA-ATATG-GTTN-T--TT--GGGGGGTGTAAT--TTATTTCTTCATATATTCGTTTA--TCT----TAA--ATCGCACATAT-TAAACTGAGAGGNCTGTGCAGATAAAATGT---G---TTTA-TCC---CGAT-TCAACAAAAAT-AAAGAAAA-------GAANAAACAA-------GTTTCCAC--G-----TGCA-AAGT------ATAAAACG---A-AAGTTG------AAAATA-A-ATANTT-TT-AAAAACA------TCAAA-ATTTTA---TCACAANCATATTCATCACTC----ACAAGTTGATGTAACATACCTGGCCTTGAATNCAAAGTGTAAGACACCCAGCTGCAGTCCCAGTTATGTCGTAACATTTGGGTAGAATCTANATGACAAATTNTNGATGACACACCCNGGTAACAGATAGNTCTATGGAACGCCGCCTGGTATGTAACAAACATTATATAAATGTGT
Reference ( family-418 ) : TTTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-ATGATCC-GGC-CTTTC-TCAT------CTC-CAAC--CCAA-A-C---TTTGTC-----TN-CAGAT-G---CA-CAG-GAAATATGGCGTGAA--TTTT-TA----GNGGG--C--GCGTCGAATTCC-AGG--CATTTTACAGG--AGAACC----AATAGA-A-AT-T--ATCTCTTG-ACACGT---TAAG-T-----TTTT-T-GA-AA--T---T--T----G---T---T-TTGGTT-TTTCAT-----GCGTAGATT---TCTT-CGGCC---ATACTTA----G-TTT----C--CAAA------CA--GC-TTCAT--G--A-CC-GCG-TCCTTGT-TGA-TGG-TTTCTG-GTTG-GTTA-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--TTC-AG-G-CT-CT-GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGCNA-GCTTTCTCGT-A----CGGTCC-TTTTTCTTCA-TCTTC--AAACCCGT-CG---A-TGAAATC-TTCATAGCTG--GATATAAAA-CGAGA-TATAATGGC-TG-T-TTGA-TTTTCGAA-TTCCT-CATCC--TGG-AT--A--TTTGTCGCCG--AT-A--TCA-----------AG--AT-CTC-CGA-GTTTTT---C-CTG--GA-GAATGGC-GT--CTA-CTAAATCCTT-AAT-CTGTTTTGCATCC-TC---CGCA-G-TCGTCT--C---CT-TATC-GTCGG----TTCTTTTC-TCCTTGGACTTTGTTCTCTTGGTCAG-ATAATTTCCTTTAAGC-G-GTCAC-GC-AGC----TT--T-GGAGG-ATATT-C-TT-TTTCG-CG-TTTTGA---ATCTTGT-C-TCT-GC-AGGGTT---TCTC-G---TGTCTT-TC-AA---TGTG-TCC-TCAATG-CTCTTGA-AATG-TGTGGC-CTTTCAT---G-------TTTT---CTTTCA-TGCA-TCTG-AT-GC-A-GA---C-GG-AAGC-TTG--CA--TTCCT-GACACGC-CAT--T--TCGTA-A---AG-GAATTCT-G-GATGGA-GTG----G-A----GGTGTTGACAG-A--T-C---GTG---------T-------GTNTG---------TCTCTCTC-CT-G-GTAG-GGGACGAT-GACGTG-GGATCTGGTGGCNTTGCTCTTG-GTGTGAC-GGTCCCGG-CATACCTGA-CACA-GGTTGTCGGT-ACA-G-TG---T-TACAGTA-A-TATTC---AG--CGTTCGC-CTC-ACACTG-TGTA-CACT-CCAC-ATAGTG-CTGG--GCA--AACTTT-ATGT-TCCCGTCT-G--GACATCTG-T--AGATTGTAAA--ACAAAACG--TTAAAAAATCGCAATAGCATGATA-TATTACAAA-ATATG-GTTN-T--TT--GGGGGGTGTAAT--TTATTTCTTCATATATTCGTTTA--TCT----TAA--ATCGCACATAT-TAAACTGAGAGGNCTGTGCAGATAAAATGT---G---TTTA-TCC---CGAT-TCAACAAAAAT-AAAGAAAA-------GAANAAACAA-------GTTTCCAC--G-----TGCA-AAGT------ATAAAACG---A-AAGTTG------AAAATA-A-ATANTT-TT-AAAAACA------TCAAA-ATTTTA---TCACAANCATATTCATCACTC----ACAAGTTGATGTAACATACCTGGCCTTGAATNCAAAGTGTAAGACACCCAGCTGCAGTCCCAGTTATGTCGTAACATTTGGGTAGAATCTANATGACAAATTNTNGATGACACACCCNGGTAACAGATAGNTCTATGGAACGCCGCCTGGTATGTAACAAACATTATATAAATGTGT
gi|1 : TTTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----C-G-TCTTG-T-CC-ATGA--GC-ATGATCT-GGC-CATTC-TCAT------CTC-CAAC--CCAA-A-CG--TTTGTT-----TC-CAGAT-A---CA-CAG-GAAATCTGGCGTGAA--TTTT-TA----GTGAG--C--GTTTTGAATTCC-AGG--CATTTTACAGG--AGAACC----AATAAC-A-AT----ATCCTTTG-ACACGT---GAAG-T-----TTTT-T-GA-AA--T---T--T----G---T---T-TTGGTT-TT--AA-----ACGTAGAAT---TTTT-CGGCC---ATACTTA----G-TTC----C--CAAA------CA--GC-TTCAT--G--A-CC-CCG-TCCTTGT-TGA-TGG-TTTCTG-GTTG-GTTA-CT-G-AGG-ATTTTC-T-ATGCT---G-GTAA--TTC-AG-G-CT-CC-TA-AACTTCAGA-TGGAGGATTTC-ATTT--CGCAGCGCAA-GCTTTCTCGT-A----CGGTCC-TTTTTCTTCG-TCTTC--AAACCCGT-CA---A-TGAAATC-TTCATAGTTG--GATATAAAA-CGAGA--ATAATGAC-TG-T-TTGA-TTTTCGAA--TCCT-CATCT--TGG-A---A--TTTTTCGCCG--AT-A--TTA-----------AG--CT-CTC-CGA-GTTTTT---C-CTC--GA-GAATGGC-GT--CTA-CTAAATCCTT-AAT-CTGTTTGGCATCT-TC---CGCA-G-TCGTCT--C---CT-TATC-GTC-G----TTCTTTTC-TCCTTGGACTTTGTTCTCTTGGTC-G-ATAATTT-CTTTAAGC-G-G-CAC-GC-AGC----TT--T-GGAGG-ATATT-C-TTGTTTCG-CG-TTTTGA---ATCTTGT-C-TCT-GC-A-GGTT---TCTC-G---TGTCTC-TT-AA---TGTGCTCC-TTAATG-CTCTTGG-AATG-TATGAC-CTTTCGT---G-------TTTT---CTTTCA-TGCA-TCTA-AT-GC-A-GA---T-AG-AAGC-TTG--CA--TTCCT-GACAC-C-CAT--T--CTATA-A---AG-TAATTC--G-GATGGA-GTG----GAA----AGTGTTGACAG-A--T-C---GTG---------T-------GTGT----------TCTCT-TC-CTGG-GTAG-GGGAC-AT-GACGTGCGGA-CTGGTGGCTTTG--CTTG-GTGTGAC--GTCCCGG-CATGCCTGG-CACAGGGTTGT-GGTAACA-G-TG---T-TACAG-A-A-TATTC---AG--CGTTCGC-CTC-ACACTG-TGTATCACT-CCAC-ATAGTG-CTGG--GC---AACTTT-ATGT-CCCCGTCT-G--GACATCTG-T--AGATTGTAAA--ACAAAACATTTTAAAAAATCACAATAGCATGATA-TATTACAAAGATATG-GTTC-T--TTGGGGGGGGTGTAAT--ATATTTCTTCATATATTCA-TTA--TCT----TAA--ATTGCACATAA-TACACTGAGAGGACTGTGCAGATAAAATGT---G---TTTA-TCC---TGAT-TTAGTAAAAAT-ATAGAAAA-------GAACAAACAA-------GTTCTCAC--A-----TACATAAGT------AGCAAACG---AGAAGTTG------AAAATAGA-ATATTTATT-AAAAACA------TCAAA-ATTTTA---TCACAAATATATTCATAACGC----ACAAGTTGATGTAACATACCTGGCCTTGAATCCAAAG-GTAAGACACCCAGCTGCAGTCCCAGTT-TGTCGTAACATTTGGGTAGAATCTAGA--AC-AATTTTTGATGACACACCCCGGTAACAAATAGATCTATGGAACGCTGCTTGGTAT-TAACAAACA-TATATAAATGTGT
gi|10 : GT-ACA-GGTG---TATACAGTA-A-TAT-C---AG--CGT-CGC-CTC-ACACTGCTGTA-CATT-CCAC-A-AGTG-CTGG--GCA--AACT-----AT-TCCCGCCT-G--GA--TCTG-T--AGATTGT-AA--ACAAAACG---TAAACAATC-----AGCATTAAA-TATTTTAAA-AAAAA-ATTG-----T--AGATAGTACTAG--TTATTATTACA---ATTTGT-------T----TAA--TTCTCCC------AAAC--AGAGGCTAGTGC----AAACTGTTACGGATTTTACTCCGTGCGGTATCAAAAAAAAA-AAAAAAAAATCGTGCAAAGAAACAA--------TCTCTGC--AGCAATTGCA-AA--------ATAAAACGCCAA-AAG-TGAAACACAAAATA-ATATGATT-TT-AAAAG-A------TC-----TTTTAATTTTATAGCCATATT--TCATTC----ACAAGCAAATGTa
gi|11 : TTTTTAATCTTC-GTTTCAGCT-T--TTG-CTTTCTTCTA-GATCTTGAT-CCTATTA--GCCATAATCA-GGC-CTCTT-TTATTCATTTCTC-AAAC--CCAA-A-TCTTTTTGTC-----TA-CAGAT-TATTTA-CAG-GAAATCTGTATTGAAAATCTT-GA----GAGGA--C--ACTTTGAATTCC-AGA--CATTTTACAGG--AGAACC----AATAGATATAT-G--ATCTGTTG-ACACGA---CACG-T-----TTTT-TGGA-AA--T---T--T----GTTCT---T-TTGGTT-TTTCAT-----GCGTCGACT---TCTT-TGG-C---ATACTTA----GTTTT----C--CAAA------CATCGC-TTCAT--G--A-CC-CGG-TCCTTGT-TGA-TG---TTCGG-TTTGTGTTA-AC-G-AGG-A-TTTC-T-ATGCTT--G-GTAA--TTC--G-G-CTGCT-GTAAACTTCccctcagaagtttattgcttaagaatggatataactgggtatgtaactagaaaatgtgaaattttcatttaagcagtctgctgtatattgtctagaagtatttccgccgggcctgatgctctgtacattaaattagatgagctacttgacagcgaattctgacaaagataggtgaatagaaataaatatatattagtcgagtaacgtagttataaaaaaaattactgcttatagcttaagagacaaaagtgtacaaaattcgccagttggaattagtcgtga
gi|12 : aatttgTTTTAATCTTC-GTC-CAGGTTT--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-CCGATTT-TGC-TATTC-TCAT------CTC-CAAC--CCAA-A-C---TTTGTT-----TC-CAGAT-A---CA-CAG-GAAATCTGGCGTAAT--TTTT-TA----GTGAG--C--GTTTTAAATTCC-AAG--CATTTTACAGG--AGAACC----AATAAC-A-A--T--ACCCCTTG-ACACGT---GAAGTT-----TTTT-T-GA-AA--T---T--T----G---T---T-TTGGTT-TTTCAA-----ACGTAGATT---TTTT-CGG-C---ATACTTAC---T-TTT----C--CAAA------CA--GC-TTCAT--G--G-CT-GCG-TCCTTTT-TTA-TGA-TTTCTG-GGTG-G-TA-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--
gi|13 : tctgATCT-C-GTC-CAGC--T--TTC-TTTCC----A-G-TTTTG-T-CC-ATGA--GC-ATGATCC-A---CCTTC-CAAT------TTC-CTA---CCAA-A-C---TTTGTT-----TT-AAGAG-G---CA-CAG-GAAATAT----TGA----TTC-TATTCTGTAGA--CCAACATCG-ATTCCAAAG--CATTTT-TAAG--AGAACCG---AACAGA-A-A--T--ATCTCTTG-G-ACGG---CAAG-C-----GTCTAT-AA-CA--C---T--TAAGCG---T---TCTTTGTTATTTCAT-----
gi|14 : tgttgtatTTGTAATCT-C-GTC-CAG---T--TTTCTTTCC----A-G-TTTTG-TTCC-ATGA--GC-ATGATCC-AGCACTTCC-TCAT------TTC-CTAC--CC-A-A-C---TTTGTT-----TA-CAGAG-G---CA-CAG-GAAATATGTTCT-AA--TTCTGTA-----TCCA--C--ACATCGAATT-C-AAA--CATTTTA-AGA--GGAACC-----ACAGA-A-A--T--ATCTCTTG-AGACGT---TAAT-T-----TTTC-C-AATAA--T---T--TTGGGG---G---T-TTGGTT-TTaatgt
gi|15 : ctgTTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-ATGATCT-GGC-CATTA-TCAT------CTC-CAAC--CCAA-A-C---TTTGTT-----TC-CAGAT-A---CA-CAG-GAAATCTGGCGTGAT--TCTT-TA----GTGAG--C--GTTTTGAATTCC-AGA--CATTTTACAGG--AG
gi|17 : ctgGTC---ATACCTGTTGTG-CTC----C--CAAAAACATACA--G---TCACTGG--A-TC-GCG-TCCTTGTCTGA-TGG-ATTCTG-GTTG-GT-A-CTCG-AGG---TTTC-T-ATGCTT--G-GTAA--TTC-AG-G-CT-CTGGT-AA
gi|2 : atacttaggtTTGTTAATCT-CCGTC-CAG---TATTTG-TTTCC----ATG-ACT-G-T-CA-A-GATAGC-A-GATTCTGGC-CTTTCACCAT------TTCTCAACAGCCAATATC---TTTGTCGTGTGTATCAGATTGT--CATCAGTGAAATATT-CG-GAA-------------GAAGATTC--ACGTCGA-TTCC-GAGATCATTTTACCGGTTCTAACCTTTAAGTATG-A-GT-TTCATCTCCCGGACACGT---TTCG-TATTTTTTTT-T-GG-AA--TATTT--T----G---T---T-CCGGTT-TTTCATATGGGGCGTAGATTATTTCTTTCGGCAGGAATTCTTA----G-TTT----TTTCAAG------CA--GC-TTCAT--GTTA-CCCGCGGTCCTTGT-TGAGTGG-TTC--G-GTTG-GTGATCT-GTAGGTATTTTCAT-ATGCTT--GTGTAAATTTCTAGTGTCT-CG-TT-AACTTCAGACTGGATGATTTCTATTTTTCGCAG-GCAACGCTTTCTTGT-AATGGTGGT---TTTTTCTTCAATCTTTCAAAACCCCT-CG---AATAAAATC-TTCATAGCTG--GAAATAAAG-CGAGA-TATGATGCC-TGTT-TTGA-TTTCGAAA-TTCTTACA-CCGATGGCAT-----TTTGTCG-CG--AT-T--TTATAATTGTTTCTAGTTATCCTT-CGATGTTTTC---G-CTG--GA-GAGTGGT-TTTGCTAGCTAAATCCTTAAAT-TTGTTTTGCATCC-TC---TGTATA-TTGTTT--CGCTTT-TACT-GTCTGTGTTTTTTTTTCTTCCTTGATCTTTGTTCTC-TGGTCAG-ATCATT--CTTTAAGG-GCGTCACTGCTAGC----TTTGT-GGAGA-AAGTTGCATT-TTTCG-CG--TTTGAAATATTTTGT-CTTCT-GC-AGGGTTTTCTTTC-GTGTTGTCTTGTC--A---TGTGTTCC-TC-ATG-TTTTTTCTAATG-TGTGGT-ACTTTATTTGG-------TTTTTTCTTTTCA-TGCA-TCTG-AT-GC-A-GAC--C-GG-AAGCTTTG--CA--TTCCT-GACACG
gi|20 : ttctgatttattctagttgtcggtcttcctttcggattgttgtactttatactgttgcttgagcgtcgattgtacagtaaatcaccatcggtaatgtcatccgttgtcttaagataaccgatacattgaaagggacgcatagatggTACAAA-ATGTG-GTTT-C--TTTAGGGGGGTGTAAT--TTATTTCaaggcgtcatgttcagtattttagagattatttttctggagtgatgtggatcaggttttttcggtttgtttttggtatgtgtttatcgtgtgttctctgttcgtcct
gi|3 : TTTTAATCT-C-GTC-TAG---T--TTG-TTTCC----A-G-CCTTG-T-CC-ATGA--GC-ATGATCT-GGC-CTTCC-TCAT------CTC-CAAC--CCAG-A-C---TTTGTC-----TG-TAGAT-A---CA-CAG-GAAATATGACGTGAA--TGTT-TT----GAGGG--C--ACATTAAATTCA-AGG--CACTTTACTGG--AGAACC----------------------TTTTG-CCATGT---TCAG-T-----TTTT-T-AA-AAATT---TGCT----G---T---T-TTGGTT-TTTCAT-----GCGTAGATT---TCTT-CGG-C---ATATTTA----GTTTT----C--CAAA------CA--GC-TTCAT--G--A-CC-GCG-TCCTTGT-TGA-TGA-TTTCTG-GTTG-G-TA-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--TTC-AG-C-CT-CT-GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGATA-GC-TTCTCAT-A----CGGCCC-TTTTTCTTTA-TCTTC--AAACCCGTGCGGTCA-TGAAATCGTTCATAGCTGCCGATATAAAA-TGAGA-TATAGTGGC-TG-T-TTGATTTTTCGAA-TT-CT-CATCT--TGG-----A--TTTGTCGCTG--AT-ATTTCA-----------AG--ATGCTC-CGGTGTTTTTCTGC-CTGC-GAGGAATGGCGGT--CCA-CTAAATCCTT-AAT-CTGTTTTGCATCTGTCT--CGCACG-TCGTTTTCC---TT-TAT--GTCGG----TTCTTTTC-TCCTTGGACTTTGTTCTCTGGTTCAG-ATAATTTCTTTTAAGC-G-GTCAT-GC-AGC----TTGAT-GGAGGTATATTGC-TT-TTTCA-CGTTTTTGA---ATCTTGT-C-TCTCGC--GGGTTGGCTCT--G---TGTCTT-TC-AATATTGTG-TCCTTCCATGTTTCTTGA-AGTGTTGTGGCGCTTTTAT---GTGGGTCTTCTT---CTTGCA-TACATTCTGTAT-GCTA-GATTCT-GGCAAGC-TTGCACA--TTCCC-GAC-CACACATGGT--CCGTA-AAAGAG-GAATTCT-G-GTAGGA-CTG----------------TGACAG-AG-T-CTCGGTGCTTTGGAGAT-------GTTGG---------TC-CTCTCTCT-G-GTAG-GGGACGATAGACGGT-GTATCT-GTG--CTTGCTCTT--GT-TGACGGGTCCCGGACATACCTGACCACA-GGTTGTCGGT-ACA-G-TGTGTT-TACAGTA-A-TATTC---AG--C-TTCGC-CTC-ACATCG-TGTA-CACT-CCAC-ATA-TG-CTGA--GCA--AACTTT-ATGG-GCCCGTCTCGGTGACATCTG-TTAAGATTGCAAG--A
gi|4 : tttgGTAGATT---TCTT-TGGC----ATA-TTA----G-TTTTTATC--CAAA------CA--ACATTCAT--G--A-CC--CG-TC-TTGT-TGA-TGG-ATTCTGCGTTT-GTTA--T-G-AGG-ATTTTC-TTATGTTTTTG-GTAAA-TTC-AG-G-CT-CT-GT-AACTTCAGACTGGAGGATTT--ATTT--CGCAGCGCTA-GCTTCTTCGTTA----CG-TCC-TCTT-CTTCA-TCTTC--AACACGGC-CG---T-TGAAATC-TTCATAGTTC--GATAAAAAAACGAGA--ACAATGGCCTG-T-TT-A-TTTTCGAA-TTCCT-TATC-----G-AC--AGATTTGTCGCTG--ATTA--TCA-----------AG--AT--TC-CGA-GTTTTT---T-CTGAGGA-GAATGGT-GT--CTA-CTAAGTCCTT-AATACTGTTTGGCATCT-TCATCCACA-G-TCGTCT--C---CTATAT--GTCGT----TTCTTTTC-TCCTCGGACTTTGT-CTCT-GGTCAGCATAATTTCTTTTAAGTTG-GTCAC-GC-AGC----CT--T-TGCAG-A-ATT-A-TT-TTT-G-CA-TTTTGA----TCTTGT-C-TCT-GCCAGGGTT---TCTT-GG--TGTTTT-TCCAA---TGCG-TCC-TTAAT--CTCTTGA-AACG-TATGAC-CTT-CAT---GGT-----TTTT---CCTTCA-TACA-TCTG-ATTGC-ATAA---C-GG-AAGC-T-G--CA--TTCCTTGACACGC-CAT--TGTTCGTA-A---AGAGAATTCTTG-GATGGA-----------------TGT-GACAG-GATT-C---GGG---------T-------GTCTGGAGATATTGCCTCTATT-CT-T-GTATTGGGACGAT-ATCGTG-GGATCTG-TGGCGTTGCTCTTG-GTGTGAC-GGTCCCGG-CATACCTGA-CACA-GGTTGTCTGT-ACA-GGTG---T-TACAGTA-A-TATTTTCAAG--CGTTCGC-CTC-ACA-TG-TGTA-CATTTCCAC-ATAGTGGCTGG--GCA--AACTTTGATGTGTCCCGTCT-GC-GACATCTGCT--AGATTGTAAC--A-AAAACG--T-AAATAATTGTA-------GAT----TTAC-------TG-GTTA-TCATT--GG----TACAATAATGAATTTGTCA-AT-TTTGTTTA--TTT----TG----TCG-----AT-TAAAC--AAAGGACTGTGCAAA-ACAA-----------------C---AAA---CAACAACAAT-GAAGACAA-------G---AAACAA-------GTTTACACTTG-----TGCA-AATT-------TAAAACG---A-AAGTTG------AAAAT--A-ACACCT-----AAAAC--------CAAACACTTTA---
gi|5 : TTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-ACTTG-T-CA-ATGA--GC-ATGATCT-GGC-CTTCA-CCAT------CTC-CAAC--CCAA-A-C---TTTGTC-----TA-CAGAT-G---CA-CAG-GAAATACGAAGTAAA--------------------C--ACGTCG-ATTCCGAGA--CATTTTACCGG--CAACCT----AGTATA-A-GT-TTCATCTTCCG-ACACGTTTCTA---T-----TTTT-T-GA-AA--T---T--T----G---T---T-CCGGTT-TTTCAT-----ACGTAGATT---TCTT-CGG-C---ATACTTA----GTTTT----C--CAAA------CA--GC-TTCAT--G--A-CC-GCG-TCCTTGT-TGA-TGG-TTTCTG-GTTG-G-TA-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--TTC-AG-G-CT-CT-GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGCAA-GC-TTCTTGT-A----TGGTGG-TTTTTCTTCA-TCTTC--AAACCCCT-CG---A-TAAAATC-TTCATAGCTG--GAAATAAAG-CGAGA-TATGATGGC-TG-T-TTGA-TTTTCGAA-TTCTT-CATCC--AGG--C--A--TTTGTCGCTGATAT-A--TCT-----------AG--AT-CCT-CGA-GTTTTT---C-CTG--GA-GAGTGGT-GT--CTA-CTAAATCCTT-AAT-CTGTTTTGCATCC-TCT--CGTA-A-TTGTTT--C---CT-TA-C-GTCGG----TTTTTTTC-TCCTTGGACTTTGTTCTC-TGGTCAG-ATCATTT-CTTTAGGC-G-GTCAC-GC-AGC----TT--TGGGAGA-ATATT-C-AT-TTTCG-CG--TTTGA---ATATTGT-C-TCT-GC-AGGGTT---TCTCGG---TGTCTT-TC-AA---TGTG-TCC-TCAATG-TTTCT-A-AATG-TGTGGC-CTTT-ATG--G-------TTTT---CTTTCA-TGCA-TCTG-AT-GC-A-GAC--C-GG-AAGC-TTG--CA--TTCCT-GACACGC-CAT--G--TCATA-A---GA-GAATTCT-G-GATGGATGTGACA-G-GTTTCGGTGTTTGGAG-G--TAC---GTG---------T-------GT-TC---------TCTCTCTC-CT-A-GTAA-GGGACGAT-GACGTG-GGATCTGGAGGCATTACTCTTG-CTATGAC-GATCCCGG-CATGCCTGA-CACA-GGTTGTCGGT-TCAGG-TG---T-TACAGTA-A-TATTC---AG--CGTTCGC-CTT-ACACTG-TGTA-CACT-CCAC-ATAGTG-CTGG--GCA--AACTTT-Agatataagtctcatac
gi|6 : TTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-ATGATCC-GGC-CTTTC-TCGT------CTC-CAAC--CCAA-A-C---TTTGTC-----TA-CAGAT-C---CA-CAG-GAAATATGACGTAAA--GTAT-CA----AGGGG--T--ATATCGAATTCC-CGA--CATTTTACAAC--AGAATC----GATGGA-A-ATATG-ATCTTTTG-GCACGTTTCTA---C-----TTTT-T-GA-AA--T---T--T----G---TTGGT-TTAGTT-TTCCAT-----ACGTAGATG---TTTT-CGG-C---ATACTTA----G-TTTA---C--CAAA------CA--GC-TTCAT--G--ACCC-GCG-TCCTTGT-TGA-TGGTTTTCTG-GTTG-G-TA-CT-G-AGG-ATTTTC-T-ATGCTT--G---AA--TTC--G-G-CT-CT-AT-AACTTCAGACTGGAGGA-TTC-ATTT--CGCAGCGCTA-GC-TTCTCGC-A----AGGTCC--TTTTCTTCA-TCTTC--AAATCTGT-CG---A-TGAAATC-TTCATAGTTG--GATATAAAA-CGCGA--ATAATGG--TG-T-TTGA-TTTTCGAA-TTCCT-CATC-----G-ATAGA--TTTGTCG-CG--AT-A--TCA-----------AG--AT-C-C-CGA-GGTTTT---C-C-G--GA-AA---GT-GT--CTA-CTAAATCCTT-AAT-CTG-TTTGCGTCT-TC---TCCA-G-TCGTCT--C---CT-TAT--GTCGG----TTCTACTC-TCTTatttataaaatattgaaaagtatcgtgtatatgtccgtaagtggtcga
gi|6 : ctgT---CTTTCA-TACA-GCTG-AT-GC-A-AA---CCGG-AAGC-TTG--CA--TTCCT-GAgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtctttcatacagctgatgcaaaccggaagcttgcattcctga
gi|7 : ctgttttaatctcgtccagtttgtttccagtcttgtccatgagcatgatccggcctttctcgtctccaacccaaactttgtctacagatccacaggaaatatgacgtaaagtatcaaggggtatatcgaattcccgacattttacaacagaatcgatggaaatatgatcttttggcacgtttctactttttgaaatttgttggtttagttttccatacgtagatgttttcggcatacttagtttaccaaacagcttcatgacccgcgtccttgttgatggttttctggttggtactgaggattttctatgcttgaattcggctctataacttcagactggaggattcatttcgcagcgctagcttctcgcaaggtccttttcttcatcttcaaatctgtcgatgaaatcttcatagttggatataaaacgcgaataatggtgtttgattttcgaattcctcatcgatagatttgtcgcgatatcaagatcccgaggttttccggaaagtgtctactaaatccttaatctgtttgcgtcttctccagtcgtctccttatgtcggttctactctcttgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnng-C-TT-TTTCG-CG-GTTTGA---ATCTTGT-C-TCT-GC-ATGGAT---TCTC-GG--TGTCTT-TC-AA---TGTG-TCC-TTAATG-CTCTTGA-A-TG-TATGAC-CTT-CAT---GG------TTTT---CTTTCA-TGCA-TCTA-AT-GC-A-AA---TAGG-AAGA-TTG--CA--TTCCT-GACACGC-CAT--T--TCGTATG---AG-GAATTCT-G-GATGGA-GTGACAGG-ATTC-GGTGTTTGGAG-A--T-----GTG-----------------GTCT-----------CTCTCTC-CT-G-GTAG-GGGACGAT-GACGTG-GGATCTGGTGGCTTTGCTCTTGTGTGTGAC-GGTCCCGG-CATACCTGA-CACA-GGTTGTCGGT-ACA-GGTG---T-TACAGTA-AATAT-C---AG--CGTTCGC-CTC-ACACTG-TGTA-CACT-CCAC-ATAGTG-CTGG--GCG--GACTTT-ATGT--CCCGTCT-G--GACATCTG-T--AGATTGTAAACAAAAAAATT--TTAAAAA--CACAATAGCATGATAATATTACAAA-ATATG-GTTTCT--TT--AGGGGGTGTGAT--TTATTTCTTCATATAATCATTTA--TCT----TAA--AATGCACATAT-TAAACTGAGAGGTTTGTGCAGATAAAATGT---G---TTTA-TCC---TGAT-TCA--AAAAAT-ATAGAAAA-------GAACAAACAA-------ATTCCCAC--A-----TGCA-AAGT------ACAAAACG---A-AAGTTG------AAAATA-A-ATATTT-TTCAAAAACA------TCAAA-ATTTTA---TCACAATC-TA-TCAT-ACTC----ACAAGTT-ATGTAACATACCTG--CTTGAATACAAAGTGTAA-ACACTCAGCTGCAGT-CCAGTTATGTCGTAA-ATTTGGGTAG-ATCTATATGACAAATTATGGATGA-----CCGGGTAACAGATAGCTCTATGGAACGCCGCC---TATGTAAC-AACATTATATAAATGTGT
gi|8 : CA-TACA-TCTG-AT-GC-A-GAT--C-GG-AAGC-TTG--CA--CTCCT-GACA
gi|8 : T-ACAAG-TG---T-TACAGTA-A-TATTC---AG--CGTTCGC-TTC-ACACTG-TGTA-CACT-CCAC-ATAGTG-CTCG--CCA--AACTTT-ATA--TCCCGTCT-G--GACATCTG-T--AGATTGT-AA--ACAAAAC-----AAAAAA-CGTAA----ATAAT--CA--ACAAA-ATATGCATTG-T-------AGATATATAGT--ATATTAC------TATTTGTTTGATTCTGCGATAAACATCGAAC-TGTGTAAGATGAGAAGG------GGA-AAAA---------------------CGA---AAACAAAAACAAAAAAAAA-------GAAGAAAAAAGGAAGTGGTTTCCAT--T-----AGCA-AAGTAAAGAAATAAAACG---A-AAGTTG------CAAAAA-A-ATAATT-TT-AAAATTATGGAATTCAAA---TTCA---TCACAAGCA-ATT-ATCACTCAGTAACAA-TTGCTGTAAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaagtgttacagtaatattcagcgttcgcttcacactgtgtacactccacatagtgctcgccaaactttatatcccgtctggacatctgtagattgtaaacaaaacaaaaaacgtaaataatcaacaaaatatgcattgtagatatatagtatattactatttgtttgattctgcgataaacatcgaactgtgtaagatgagaaggggaaaaacgaaaacaaaaacaaaaaaaaagaagaaaaaaggaagtggtttccattagcaaagtaaagaaataaaacgaaagttgcaaaaaaataattttaaaattatggaattcaaattcatcacaagcaattatcactcagtaacaattgctgtaaaaaaggaaataactataattgacccacgtgaaatttcataaaacaagtatcagtataggcttccgtgtaagtacattcactataccgctatatatagaataaattcccctgccatagctgcacttgacggaaattctgaattgaaatgaaaatatttgccagtatgtagttataaaaaaaaccatacggttacctgcttaactatagattgtcaaattgcagtcggaattcgtcgtcaa
gi|9 : catacatctgatgcagatcggaagcttgcactcctgacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGACTG-AGGATTTT--TTT--GGCAG-GCTA----CTCT-GC-A----TGGTCCACTTTTCTTTA-TCAT---AAACC-GT-CA---A-TGAA-TC-TTCATA-TTA--GATATAGA---GAGAATATA-TGGC-TG-TCTTGA-TTTTCGAAATTCTT-CATCC--TGG-AT--A--TT-GT-GCTG--AT-A--TCA-----------AGT-AT-CTTACGA-GTTTTT---TTCTG--GA---ATGGCCGTA-CTA-CTAA-TCC---AAT-CTGTTTTGCATCC-TCG--CGCA-GATCGTCT--C---CT-TATCTGTCGG----TTCTCTTC-TCCTTTGACTT-GTTCTCT--ATCGG-ATAATTTTCTTTAAG-------GC-GC-AGCAAGATT--T-GGAAG-ATATT-C-TT-TTTCGGCG-TTTTGA----TCTTGTTC-TCT-GC-AGGGTT---TCTG-A---TGTCTT-CA-AA---TGT--TCG-TCAATG-TTTCTGA-A-TG-TGTGGC-CTTT-AT---G-------GTTT---CTTTCAATAAA-TCT---T-AC-A-GA---C-GG-AAGT-TTG--CAAGTTC---AGCAC-C-CAT--G--TCGTA-A---GA-GAATTAT-GTGATGGA-------------------TTGACAGGA--T-C---GCG---------TTTTGGAGATGTG---------TCTCTCCT-CT-GTGTAG-GG-ACGAT-GACGTG-GGATCTGGTGGCTTTGCCATTT-GGGTGAC-GGT-CCGG-CATA-CTGA-CACA-AGTTGTCGGT-ACA-G--GAT-T-TACAGTATA-TATTC---AAGTCGTTCGCGCTCTACACTG-GTTA-CACT-CCACAATAGTG-CTGGCTGCAATAACTTT-ATG----CCGTCT-A--GACATCTG-T--AAATGGT-CG--ACAAAAaaaaggaaataactataattgacccacgtgaaatttcataaaacaagtatcagtataggcttccgtgtaagtacattcactataccgctatatatagaataaattcccctgccatagctgcacttgacggaaattctgaattgaaatgaaaatatttgccagtatgtagttataaaaaaaaccatacggttacctgcttaactatagattgtcaaattgcagtcggaattcgtcgtcaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTTCTGATTAGCAGGTTGTGGGTCTTCAGTCACTGCGTGGTGTGATTTCGTTGTATGCTGTCATTTGATTCGTCCGATGTACAGATAAATCACCAACCCGAGTACAGACGTGAAGAAGCCGAACATAAAGA
Unaligned ( gi|18 ): GTTCTGATTACAGTTGTGGTCTTCCTTTCTGATGTGTATTTCTTTATACTGTTGTTTGAGCTGTCGATGTACAGTAAATCACCATCGTAAGTCACCGCAAGA
Unaligned ( gi|19 ): CATCGCAAGTCACTGCTTTTTGTGATAACCGTTAAATGAGC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 111111 111 11111 11111 222222222222222222222222222 4444444444444444444 22222222222222222 1111 11111 22222 111111 1111 111111 11 11 11111 11111 11 33333333333333 22222222222 11 1 1 11111 11 1 11 222 111 111 111 1111 1 1111 1111 11 1 1111 222 222 111 1 11 33333333333 22222 11111 11111 3333333333333333333333333333333333333333333333333333333333333333333333 111 22 11 1111 3333 222222 11 333333333 11 11 222222222222222222222 1 1 666666666666666666666666666 2222222 22222222 33333333 222222222 111 222222 1111 22222222 11 111 1 2222 11 1 1 1 1 1 1 11 1 22222 222 1 1 1
lowQualScore : 8 4 4 666 55 4 8888 4 4 4 4 4 55 4 44 4 0 4 111111 4 55 4 4 111 00000 55 66666 4 4 0 7 666666666666666666666666666 0 8 55 55 1111111111111111111 4 77777777777777777 4 4 4 66 777 66 8888 9999999 4 4 22222 888 5 55555 555555 8888 66 222222 66 4 66 66 4 55 4 4 4 4 4 4 11 4 4 4 4 4 4 66 4 00 88 5 5 5 5 5 5 77 4 1 5 8 0 1 5 22222 0 55 5 77 3 5 00000 5 77 88 77 0 5 5 5 5 5 5 55555555555555 4 8888 77 77777777777 33 1 0 5 1 33333 33 5 2 1 33 5 0 5 5 5 777 111 77 000 5 999 0 2222 5 9 1 6 88 2222 3 6 6 4444 88 6 6 3 1 5 5 5 77 5555 5 5 5 5 0 000 3 777 5 5 000 1 5 1 5 0 5 7 5 5 33 77777777777 888 4 4 4 4 4 4 55555 4 4 66 66 4 6 6 77777 11111 6 6 6 3333333333333333333333333333333333333333333333333333333333333333333333 2 6 000 6 6 6 1 99 1 6 6 6 6 5 5 5 5 5 5 888 66 5 5 5 5 5 5 5 66 66 5 11 5 33 5 77 4444 2 4444 1 66 000000 88 0 6 888 666666666 1 99 66 66 0 11 11 666666666666666666666 0 888 3 5 777777777777777777777777777 77 8 1 6666666 0 3 99999999 55555555 8 444444444 444 8 0 333333 88 8 1 2222 77777777 0 33 444 1 66 3 5 8 1111 2 6 77 1 5 5 5 5 5 5 1 88 5 1 1 66666 1 1 000 5 5 5
lowQualScore : . . . ... .. . .... . . . . . .. . .. . . . ...... . .. . . ... ..... .. ..... . . . . ........................... . . .. .. ................... . ................. . . . .. ... .. .... ....... . . ..... ... . ..... ...... .... .. ...... .. . .. .. . .. . . . . . . .. . . . . . . .. . .. .. . . . . . . .. . . . . . . . ..... . .. . .. . . ..... . .. .. .. . . . . . . . .............. . .... .. ........... .. . . . . ..... .. . . . .. . . . . . ... ... .. ... . ... . .... . . . . .. .... . . . .... .. . . . . . . . .. .... . . . . . ... . ... . . ... . . . . . . . . . .. ........... ... . . . . . . ..... . . .. .. . . . ..... ..... . . . ...................................................................... . . ... . . . . .. . . . . . . . . . . . ... .. . . . . . . . .. .. . .. . .. . .. .... . .... . .. ...... .. . . ... ......... . .. .. .. . .. .. ..................... . ... . . ........................... .. . . ....... . . ........ ........ . ......... ... . . ...... .. . . .... ........ . .. ... . .. . . . .... . . .. . . . . . . . . .. . . . ..... . . ... . . .
lowQualScore : 0 0 0 555 55 0 5555 0 0 0 0 0 55 0 55 0 3 0 555555 0 55 0 0 000 00000 00 44444 0 0 6 3 222222222222222222222222222 8 0 55 55 8888888888888888888 4 22222222222222222 4 4 4 11 888 11 9999 2222222 4 4 55555 888 0 77777 666666 3333 11 888888 11 4 11 11 4 66 4 4 4 4 4 4 99 4 4 4 4 4 4 11 4 66 22 0 0 0 0 0 7 99 3 0 7 4 1 7 7 66666 7 99 7 99 0 7 44444 7 99 00 77 1 7 7 7 7 7 7 66666666666666 3 3333 99 11111111111 66 4 1 7 4 99999 66 7 3 4 66 7 1 7 7 7 111 777 99 000 7 666 7 1111 7 5 7 7 88 7777 2 7 7 2222 33 7 7 5 4 7 7 7 11 0000 7 7 7 7 7 000 0 111 7 7 000 4 7 4 7 7 7 1 7 7 99 99999999999 888 4 4 4 4 4 4 33333 4 4 11 11 4 6 7 33333 88888 7 7 7 0000000000000000000000000000000000000000000000000000000000000000000000 5 7 222 7 7 7 0 22 0 7 7 7 7 0 0 0 0 0 0 888 99 0 0 0 0 0 0 0 99 99 0 11 7 66 7 99 3333 5 6666 0 44 222222 66 8 7 777 222222222 0 22 66 00 8 66 00 888888888888888888888 6 444 8 4 000000000000000000000000000 00 0 4 0000000 8 8 22222222 66666666 0 666666666 000 0 8 000000 88 0 0 6666 00000000 8 66 000 0 55 2 0 8 2222 5 5 55 0 5 0 0 5 0 5 0 00 5 0 0 00000 0 0 555 0 5 5
consensus : TTTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-ATGATCC-GGC-CTTTC-TCAT------CTC-CAAC--CCAA-A-C---TTTGTC-----TN-CAGAT-G---CA-CAG-GAAATATGGCGTGAA--TTTT-TA----GNGGG--C--GCGTCGAATTCC-AGG--CATTTTACAGG--AGAACC----AATAGA-A-AT-T--ATCTCTTG-ACACGT---T---AAG-T-----TTTT-T-GA-AA--T---T--T----G---T---T-TTGGTT-TTTCAT-----GCGTAGATT---TCTT-CGGCC---ATACTTA----G-TTT----C--CAAA------CA--GC-TTCAT--G--A-CC-GCG-TCCTTGT-TGA-TGG-TTTCTG-GTTG-GTTA-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--TTC-AG-G-CT-CT-GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGCNA-GCTTTCTCGT-A----CGGTCC-TTTTTCTTCA-TCTTC--AAACCCGT-CG---A-TGAAATC-TTCATAGCTG--GATATAAAA-CGAGA-TATAATGGC-TG-T-TTGA-TTTTCGAA-TTCCT-CATCC--TGG-AT--A--TTTGTCGCCGAT-A--T--CA-----------AG--AT-CTC-CGA-GTTTTT---C-CTG--GA-GAATGGC-GT--CTA-CTAAATCCTT-AAT-CTGTTTTGCATCC-TC---CGCA-G-TCGTCT--C---CT-TATC-GTCGG----TTCTTTTC-TCCTTGGACTTTGTTCTCT-GGTCAG-ATAATTTCCTTTAAGC-G-GTCAC-GC-AGC----TT--TGG-AGG-ATATT-C-TT-TTTCG-CG-TTTTGA---ATCTTGT-C-TCT-GC-AGGGTT---TCTCGG--TGTCTT-TC-AA---TGTG-TCC-TCAATG-CTCTTGA-AATG-TGTGGC-CTTTCAT---GG------TTTT---CTTTCA-TGCA-TCTG-AT-GC-A-GA---C-GG-AAGC-TTG--CA--TTCCT-GACACGC-CAT--T--TCGTA-A---AG-GAATTCT-G-GATGGA-GTG----G-A----GGTGTTGACAG-A--T-C---GTG---------T-------GTNTG---------TCTCTCTC-CT-G-GTAG-GGGACGAT-GACGTG-GGATCTGGTGGCNTTGCTCTTG-GTGTGAC-GGTCCCGG-CATACCTGA-CACA-GGTTGTCGGT-ACAG-GTG-T-TACAGTA-ATAT-TC---AG--CGTTCGC-CTC-ACACTG-TGTA-CA-CTCCAC-ATAGT-GCTGG--GCA--AACTTT-ATGT-TCCCGTCT-G--GACATCTG-T--AGATTGTAA--AACAAAACG--TTAAAAAATCGCAATAGCATGAT-ATATTACAAA-ATATG-G-TTNT--TT--GGGGGGTGTAAT--TTATTTCTTCATATATTCGTTTA--TCT----TAA--ATCGCACATAT-TAAACTGAGAGGNCTGTGCAGATAAAATGT---G---TTTA-TCC---CGAT-TCAACAAAAAT-AAAGAAAA-------GAANAAACAA-------GTTTCCAC--G-----TGCA-AAGT------ATAAAACG---A-AAGTTG------AAAATA-A-ATANTT-TT-AAAAACA------TCAAA-ATTTTA---TCACAANCATATTCATCACTC----ACAAGTTGATGTAACATACCTGGCCTTGAATNCAAAGTGTAAGACACCCAGCTGCAGTCCCAGTTATGTCGTAACATTTGGGTAGAATCTANATGACAAATTNTNGATGACACACCCNGGTAACAGATAGNTCTATGGAACGCCGCCTGGTATGTAACAAACATTATATAAATGTGT
Reference ( family-418 ) : TTTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-ATGATCC-GGC-CTTTC-TCAT------CTC-CAAC--CCAA-A-C---TTTGTC-----TN-CAGAT-G---CA-CAG-GAAATATGGCGTGAA--TTTT-TA----GNGGG--C--GCGTCGAATTCC-AGG--CATTTTACAGG--AGAACC----AATAGA-A-AT-T--ATCTCTTG-ACACGT---T---AAG-T-----TTTT-T-GA-AA--T---T--T----G---T---T-TTGGTT-TTTCAT-----GCGTAGATT---TCTT-CGGCC---ATACTTA----G-TTT----C--CAAA------CA--GC-TTCAT--G--A-CC-GCG-TCCTTGT-TGA-TGG-TTTCTG-GTTG-GTTA-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--TTC-AG-G-CT-CT-GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGCNA-GCTTTCTCGT-A----CGGTCC-TTTTTCTTCA-TCTTC--AAACCCGT-CG---A-TGAAATC-TTCATAGCTG--GATATAAAA-CGAGA-TATAATGGC-TG-T-TTGA-TTTTCGAA-TTCCT-CATCC--TGG-AT--A--TTTGTCGCCGAT-A--T--CA-----------AG--AT-CTC-CGA-GTTTTT---C-CTG--GA-GAATGGC-GT--CTA-CTAAATCCTT-AAT-CTGTTTTGCATCC-TC---CGCA-G-TCGTCT--C---CT-TATC-GTCGG----TTCTTTTC-TCCTTGGACTTTGTTCTCTTGGTCAG-ATAATTTCCTTTAAGC-G-GTCAC-GC-AGC----TT--TGG-AGG-ATATT-C-TT-TTTCG-CG-TTTTGA---ATCTTGT-C-TCT-GC-AGGGTT---TCTCG---TGTCTT-TC-AA---TGTG-TCC-TCAATG-CTCTTGA-AATG-TGTGGC-CTTTCAT---G-------TTTT---CTTTCA-TGCA-TCTG-AT-GC-A-GA---C-GG-AAGC-TTG--CA--TTCCT-GACACGC-CAT--T--TCGTA-A---AG-GAATTCT-G-GATGGA-GTG----G-A----GGTGTTGACAG-A--T-C---GTG---------T-------GTNTG---------TCTCTCTC-CT-G-GTAG-GGGACGAT-GACGTG-GGATCTGGTGGCNTTGCTCTTG-GTGTGAC-GGTCCCGG-CATACCTGA-CACA-GGTTGTCGGT-ACAG-GTG-T-TACAGTA-ATAT-TC---AG--CGTTCGC-CTC-ACACTG-TGTA-CA-CTCCAC-ATAGT-GCTGG--GCA--AACTTT-ATGT-TCCCGTCT-G--GACATCTG-T--AGATTGTAA--AACAAAACG--TTAAAAAATCGCAATAGCATGAT-ATATTACAAA-ATATG-G-TTNT--TT--GGGGGGTGTAAT--TTATTTCTTCATATATTCGTTTA--TCT----TAA--ATCGCACATAT-TAAACTGAGAGGNCTGTGCAGATAAAATGT---G---TTTA-TCC---CGAT-TCAACAAAAAT-AAAGAAAA-------GAANAAACAA-------GTTTCCAC--G-----TGCA-AAGT------ATAAAACG---A-AAGTTG------AAAATA-A-ATANTT-TT-AAAAACA------TCAAA-ATTTTA---TCACAANCATATTCATCACTC----ACAAGTTGATGTAACATACCTGGCCTTGAATNCAAAGTGTAAGACACCCAGCTGCAGTCCCAGTTATGTCGTAACATTTGGGTAGAATCTANATGACAAATTNTNGATGACACACCCNGGTAACAGATAGNTCTATGGAACGCCGCCTGGTATGTAACAAACATTATATAAATGTGT
gi|1 : TTTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----C-G-TCTTG-T-CC-ATGA--GC-ATGATCT-GGC-CATTC-TCAT------CTC-CAAC--CCAA-A-CG--TTTGTT-----TC-CAGAT-A---CA-CAG-GAAATCTGGCGTGAA--TTTT-TA----GTGAG--C--GTTTTGAATTCC-AGG--CATTTTACAGG--AGAACC----AATAAC-A-AT----ATCCTTTG-ACACGT---G---AAG-T-----TTTT-T-GA-AA--T---T--T----G---T---T-TTGGTT-TT--AA-----ACGTAGAAT---TTTT-CGGCC---ATACTTA----G-TTC----C--CAAA------CA--GC-TTCAT--G--A-CC-CCG-TCCTTGT-TGA-TGG-TTTCTG-GTTG-GTTA-CT-G-AGG-ATTTTC-T-ATGCT---G-GTAA--TTC-AG-G-CT-CC-TA-AACTTCAGA-TGGAGGATTTC-ATTT--CGCAGCGCAA-GCTTTCTCGT-A----CGGTCC-TTTTTCTTCG-TCTTC--AAACCCGT-CA---A-TGAAATC-TTCATAGTTG--GATATAAAA-CGAGA--ATAATGAC-TG-T-TTGA-TTTTCGAA--TCCT-CATCT--TGG-A---A--TTTTTCGCCGAT-A--T--TA-----------AG--CT-CTC-CGA-GTTTTT---C-CTC--GA-GAATGGC-GT--CTA-CTAAATCCTT-AAT-CTGTTTGGCATCT-TC---CGCA-G-TCGTCT--C---CT-TATC-GTC-G----TTCTTTTC-TCCTTGGACTTTGTTCTCTTGGTC-G-ATAATTT-CTTTAAGC-G-G-CAC-GC-AGC----TT--TGG-AGG-ATATT-C-TTGTTTCG-CG-TTTTGA---ATCTTGT-C-TCT-GC-A-GGTT---TCTCG---TGTCTC-TT-AA---TGTGCTCC-TTAATG-CTCTTGG-AATG-TATGAC-CTTTCGT---G-------TTTT---CTTTCA-TGCA-TCTA-AT-GC-A-GA---T-AG-AAGC-TTG--CA--TTCCT-GACAC-C-CAT--T--CTATA-A---AG-TAATTC--G-GATGGA-GTG----GAA----AGTGTTGACAG-A--T-C---GTG---------T-------GTGT----------TCTCT-TC-CTGG-GTAG-GGGAC-AT-GACGTGCGGA-CTGGTGGCTTTG--CTTG-GTGTGAC--GTCCCGG-CATGCCTGG-CACAGGGTTGT-GGTAACA--GTG-T-TACAG-A-ATAT-TC---AG--CGTTCGC-CTC-ACACTG-TGTATCA-CTCCAC-ATAGT-GCTGG--GC---AACTTT-ATGT-CCCCGTCT-G--GACATCTG-T--AGATTGTAA--AACAAAACATTTTAAAAAATCACAATAGCATGAT-ATATTACAAAGATATG-G-TTCT--TTGGGGGGGGTGTAAT--ATATTTCTTCATATATTCA-TTA--TCT----TAA--ATTGCACATAA-TACACTGAGAGGACTGTGCAGATAAAATGT---G---TTTA-TCC---TGAT-TTAGTAAAAAT-ATAGAAAA-------GAACAAACAA-------GTTCTCAC--A-----TACATAAGT------AGCAAACG---AGAAGTTG------AAAATAGA-ATATTTATT-AAAAACA------TCAAA-ATTTTA---TCACAAATATATTCATAACGC----ACAAGTTGATGTAACATACCTGGCCTTGAATCCAAAG-GTAAGACACCCAGCTGCAGTCCCAGTT-TGTCGTAACATTTGGGTAGAATCTAGA--AC-AATTTTTGATGACACACCCCGGTAACAAATAGATCTATGGAACGCTGCTTGGTAT-TAACAAACA-TATATAAATGTGT
gi|10 : GT-ACAG-GTG-TATACAGTA-ATAT--C---AG--CGT-CGC-CTC-ACACTGCTGTA-CA-TTCCAC-A-AGT-GCTGG--GCA--AACT-----AT-TCCCGCCT-G--GA--TCTG-T--AGATTGT-A--AACAAAACG---TAAACAATC-----AGCATTAA-ATATTTTAAA-AAAAA-A-TTG----T--AGATAGTACTAG--TTATTATTACA---ATTTGT-------T----TAA--TTCTCCC------AAAC--AGAGGCTAGTGC----AAACTGTTACGGATTTTACTCCGTGCGGTATCAAAAAAAAA-AAAAAAAAATCGTGCAAAGAAACAA--------TCTCTGC--AGCAATTGCA-AA--------ATAAAACGCCAA-AAG-TGAAACACAAAATA-ATATGATT-TT-AAAAG-A------TC-----TTTTAATTTTATAGCCATATT--TCATTC----ACAAGCAAATGTa
gi|11 : TTTTTAATCTTC-GTTTCAGCT-T--TTG-CTTTCTTCTA-GATCTTGAT-CCTATTA--GCCATAATCA-GGC-CTCTT-TTATTCATTTCTC-AAAC--CCAA-A-TCTTTTTGTC-----TA-CAGAT-TATTTA-CAG-GAAATCTGTATTGAAAATCTT-GA----GAGGA--C--ACTTTGAATTCC-AGA--CATTTTACAGG--AGAACC----AATAGATATAT-G--ATCTGTTG-ACACGA---C---ACG-T-----TTTT-TGGA-AA--T---T--T----GTTCT---T-TTGGTT-TTTCAT-----GCGTCGACT---TCTT-TGG-C---ATACTTA----GTTTT----C--CAAA------CATCGC-TTCAT--G--A-CC-CGG-TCCTTGT-TGA-TG---TTCGG-TTTGTGTTA-AC-G-AGG-A-TTTC-T-ATGCTT--G-GTAA--TTC--G-G-CTGCT-GTAAACTTCccctcagaagtttattgcttaagaatggatataactgggtatgtaactagaaaatgtgaaattttcatttaagcagtctgctgtatattgtctagaagtatttccgccgggcctgatgctctgtacattaaattagatgagctacttgacagcgaattctgacaaagataggtgaatagaaataaatatatattagtcgagtaacgtagttataaaaaaaattactgcttatagcttaagagacaaaagtgtacaaaattcgccagttggaattagtcgtga
gi|12 : aatttgTTTTAATCTTC-GTC-CAGGTTT--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-CCGATTT-TGC-TATTC-TCAT------CTC-CAAC--CCAA-A-C---TTTGTT-----TC-CAGAT-A---CA-CAG-GAAATCTGGCGTAAT--TTTT-TA----GTGAG--C--GTTTTAAATTCC-AAG--CATTTTACAGG--AGAACC----AATAAC-A-A--T--ACCCCTTG-ACACGT---G---AAGTT-----TTTT-T-GA-AA--T---T--T----G---T---T-TTGGTT-TTTCAA-----ACGTAGATT---TTTT-CGG-C---ATACTTAC---T-TTT----C--CAAA------CA--GC-TTCAT--G--G-CT-GCG-TCCTTTT-TTA-TGA-TTTCTG-GGTG-G-TA-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--
gi|13 : tctgATCT-C-GTC-CAGC--T--TTC-TTTCC----A-G-TTTTG-T-CC-ATGA--GC-ATGATCC-A---CCTTC-CAAT------TTC-CTA---CCAA-A-C---TTTGTT-----TT-AAGAG-G---CA-CAG-GAAATAT----TGA----TTC-TATTCTGTAGA--CCAACATCG-ATTCCAAAG--CATTTT-TAAG--AGAACCG---AACAGA-A-A--T--ATCTCTTG-G-ACGG---C---AAG-C-----GTCTAT-AA-CA--C---T--TAAGCG---T---TCTTTGTTATTTCAT-----
gi|14 : tgttgtatTTGTAATCT-C-GTC-CAG---T--TTTCTTTCC----A-G-TTTTG-TTCC-ATGA--GC-ATGATCC-AGCACTTCC-TCAT------TTC-CTAC--CC-A-A-C---TTTGTT-----TA-CAGAG-G---CA-CAG-GAAATATGTTCT-AA--TTCTGTA-----TCCA--C--ACATCGAATT-C-AAA--CATTTTA-AGA--GGAACC-----ACAGA-A-A--T--ATCTCTTG-AGACGT---T---AAT-T-----TTTC-C-AATAA--T---T--TTGGGG---G---T-TTGGTT-TTaatgt
gi|15 : ctgTTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-ATGATCT-GGC-CATTA-TCAT------CTC-CAAC--CCAA-A-C---TTTGTT-----TC-CAGAT-A---CA-CAG-GAAATCTGGCGTGAT--TCTT-TA----GTGAG--C--GTTTTGAATTCC-AGA--CATTTTACAGG--AG
gi|17 : ctgGTC---ATACCTGTTGTG-CTC----C--CAAAAACATACA--G---TCACTGG--A-TC-GCG-TCCTTGTCTGA-TGG-ATTCTG-GTTG-GT-A-CTCG-AGG---TTTC-T-ATGCTT--G-GTAA--TTC-AG-G-CT-CTGGT-AA
gi|2 : atacttaggtTTGTTAATCT-CCGTC-CAG---TATTTG-TTTCC----ATG-ACT-G-T-CA-A-GATAGC-A-GATTCTGGC-CTTTCACCAT------TTCTCAACAGCCAATATC---TTTGTCGTGTGTATCAGATTGT--CATCAGTGAAATATT-CG-GAA-------------GAAGATTC--ACGTCGA-TTCC-GAGATCATTTTACCGGTTCTAACCTTTAAGTATG-A-GT-TTCATCTCCCGGACACGT---T---TCG-TATTTTTTTT-T-GG-AA--TATTT--T----G---T---T-CCGGTT-TTTCATATGGGGCGTAGATTATTTCTTTCGGCAGGAATTCTTA----G-TTT----TTTCAAG------CA--GC-TTCAT--GTTA-CCCGCGGTCCTTGT-TGAGTGG-TTC--G-GTTG-GTGATCT-GTAGGTATTTTCAT-ATGCTT--GTGTAAATTTCTAGTGTCT-CG-TT-AACTTCAGACTGGATGATTTCTATTTTTCGCAG-GCAACGCTTTCTTGT-AATGGTGGT---TTTTTCTTCAATCTTTCAAAACCCCT-CG---AATAAAATC-TTCATAGCTG--GAAATAAAG-CGAGA-TATGATGCC-TGTT-TTGA-TTTCGAAA-TTCTTACA-CCGATGGCAT-----TTTGTCG-CGAT-T--T--TATAATTGTTTCTAGTTATCCTT-CGATGTTTTC---G-CTG--GA-GAGTGGT-TTTGCTAGCTAAATCCTTAAAT-TTGTTTTGCATCC-TC---TGTATA-TTGTTT--CGCTTT-TACT-GTCTGTGTTTTTTTTTCTTCCTTGATCTTTGTTCTC-TGGTCAG-ATCATT--CTTTAAGG-GCGTCACTGCTAGC----TTTGTGG-AGA-AAGTTGCATT-TTTCG-CG--TTTGAAATATTTTGT-CTTCT-GC-AGGGTTTTCTTTCGTGTTGTCTTGTC--A---TGTGTTCC-TC-ATG-TTTTTTCTAATG-TGTGGT-ACTTTATTTGG-------TTTTTTCTTTTCA-TGCA-TCTG-AT-GC-A-GAC--C-GG-AAGCTTTG--CA--TTCCT-GACACG
gi|20 : ttctgatttattctagttgtcggtcttcctttcggattgttgtactttatactgttgcttgagcgtcgattgtacagtaaatcaccatcggtaatgtcatccgttgtcttaagataaccgatacattgaaagggacgcatagatggTACAAA-ATGTG-G-TTTC--TTTAGGGGGGTGTAAT--TTATTTCaaggcgtcatgttcagtattttagagattatttttctggagtgatgtggatcaggttttttcggtttgtttttggtatgtgtttatcgtgtgttctctgttcgtcct
gi|3 : TTTTAATCT-C-GTC-TAG---T--TTG-TTTCC----A-G-CCTTG-T-CC-ATGA--GC-ATGATCT-GGC-CTTCC-TCAT------CTC-CAAC--CCAG-A-C---TTTGTC-----TG-TAGAT-A---CA-CAG-GAAATATGACGTGAA--TGTT-TT----GAGGG--C--ACATTAAATTCA-AGG--CACTTTACTGG--AGAACC----------------------TTTTG-CCATGT---T---CAG-T-----TTTT-T-AA-AAATT---TGCT----G---T---T-TTGGTT-TTTCAT-----GCGTAGATT---TCTT-CGG-C---ATATTTA----GTTTT----C--CAAA------CA--GC-TTCAT--G--A-CC-GCG-TCCTTGT-TGA-TGA-TTTCTG-GTTG-G-TA-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--TTC-AG-C-CT-CT-GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGATA-GC-TTCTCAT-A----CGGCCC-TTTTTCTTTA-TCTTC--AAACCCGTGCGGTCA-TGAAATCGTTCATAGCTGCCGATATAAAA-TGAGA-TATAGTGGC-TG-T-TTGATTTTTCGAA-TT-CT-CATCT--TGG-----A--TTTGTCGCTGAT-ATTT--CA-----------AG--ATGCTC-CGGTGTTTTTCTGC-CTGC-GAGGAATGGCGGT--CCA-CTAAATCCTT-AAT-CTGTTTTGCATCTGTCT--CGCACG-TCGTTTTCC---TT-TAT--GTCGG----TTCTTTTC-TCCTTGGACTTTGTTCTCTGGTTCAG-ATAATTTCTTTTAAGC-G-GTCAT-GC-AGC----TTGATGG-AGGTATATTGC-TT-TTTCA-CGTTTTTGA---ATCTTGT-C-TCTCGC--GGGTTGGCTCT-G---TGTCTT-TC-AATATTGTG-TCCTTCCATGTTTCTTGA-AGTGTTGTGGCGCTTTTAT---GTGGGTCTTCTT---CTTGCA-TACATTCTGTAT-GCTA-GATTCT-GGCAAGC-TTGCACA--TTCCC-GAC-CACACATGGT--CCGTA-AAAGAG-GAATTCT-G-GTAGGA-CTG----------------TGACAG-AG-T-CTCGGTGCTTTGGAGAT-------GTTGG---------TC-CTCTCTCT-G-GTAG-GGGACGATAGACGGT-GTATCT-GTG--CTTGCTCTT--GT-TGACGGGTCCCGGACATACCTGACCACA-GGTTGTCGGT-ACAGTGTGTT-TACAGTA-ATAT-TC---AG--C-TTCGC-CTC-ACATCG-TGTA-CA-CTCCAC-ATA-T-GCTGA--GCA--AACTTT-ATGG-GCCCGTCTCGGTGACATCTG-TTAAGATTGCAA--GA
gi|4 : tttgGTAGATT---TCTT-TGGC----ATA-TTA----G-TTTTTATC--CAAA------CA--ACATTCAT--G--A-CC--CG-TC-TTGT-TGA-TGG-ATTCTGCGTTT-GTTA--T-G-AGG-ATTTTC-TTATGTTTTTG-GTAAA-TTC-AG-G-CT-CT-GT-AACTTCAGACTGGAGGATTT--ATTT--CGCAGCGCTA-GCTTCTTCGTTA----CG-TCC-TCTT-CTTCA-TCTTC--AACACGGC-CG---T-TGAAATC-TTCATAGTTC--GATAAAAAAACGAGA--ACAATGGCCTG-T-TT-A-TTTTCGAA-TTCCT-TATC-----G-AC--AGATTTGTCGCTGATTA--T--CA-----------AG--AT--TC-CGA-GTTTTT---T-CTGAGGA-GAATGGT-GT--CTA-CTAAGTCCTT-AATACTGTTTGGCATCT-TCATCCACA-G-TCGTCT--C---CTATAT--GTCGT----TTCTTTTC-TCCTCGGACTTTGT-CTCT-GGTCAGCATAATTTCTTTTAAGTTG-GTCAC-GC-AGC----CT--TTG-CAG-A-ATT-A-TT-TTT-G-CA-TTTTGA----TCTTGT-C-TCT-GCCAGGGTT---TCTTGG--TGTTTT-TCCAA---TGCG-TCC-TTAAT--CTCTTGA-AACG-TATGAC-CTT-CAT---GGT-----TTTT---CCTTCA-TACA-TCTG-ATTGC-ATAA---C-GG-AAGC-T-G--CA--TTCCTTGACACGC-CAT--TGTTCGTA-A---AGAGAATTCTTG-GATGGA-----------------TGT-GACAG-GATT-C---GGG---------T-------GTCTGGAGATATTGCCTCTATT-CT-T-GTATTGGGACGAT-ATCGTG-GGATCTG-TGGCGTTGCTCTTG-GTGTGAC-GGTCCCGG-CATACCTGA-CACA-GGTTGTCTGT-ACAG-GTG-T-TACAGTA-ATAT-TTTCAAG--CGTTCGC-CTC-ACA-TG-TGTA-CATTTCCAC-ATAGTGGCTGG--GCA--AACTTTGATGTGTCCCGTCT-GC-GACATCTGCT--AGATTGTAA--CA-AAAACG---TAAATAATTGTA-------GAT----TTAC-------TG-G-TTATCATT------GGTACAATAATGAATTTGTCA-AT-TTTGTTTA--TTT----T----GTCG-----AT-TAAAC--AAAGGACTGTGCAAA-ACAA-----------------C---AAA---CAACAACAAT-GAAGACAA-------G---AAACAA-------GTTTACACTTG-----TGCA-AATT-------TAAAACG---A-AAGTTG------AAAAT--A-ACACCT-----AAAAC--------CAAACACTTTA---
gi|5 : TTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-ACTTG-T-CA-ATGA--GC-ATGATCT-GGC-CTTCA-CCAT------CTC-CAAC--CCAA-A-C---TTTGTC-----TA-CAGAT-G---CA-CAG-GAAATACGAAGTAAA--------------------C--ACGTCGA-TTCCGAGA--CATTTTACCGG--CAACCT----AGTATA-A-GT-TTCATCTTCCG-ACACGT---TTCTA---T-----TTTT-T-GA-AA--T---T--T----G---T---T-CCGGTT-TTTCAT-----ACGTAGATT---TCTT-CGGC----ATACTTA----G-TTTT---C--CAAA------CA--GC-TTCAT--G--A-CC-GCG-TCCTTGT-TGA-TGG-TTTCTG-GTTG-GT-A-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--TTC-AG-G-CT-CT-GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGCAA-GCTT-CTTGT-A----TGGTGG-TTTTTCTTCA-TCTTC--AAACCCCT-CG---A-TAAAATC-TTCATAGCTG--GAAATAAAG-CGAGA-TATGATGGC-TG-T-TTGA-TTTTCGAA-TTCTT-CATCC--AGG--C--A--TTTGTCGCTGAT-A--TATCT-----------AG--AT-CCT-CGA-GTTTTT---C-CTG--GA-GAGTGGT-GT--CTA-CTAAATCCTT-AAT-CTGTTTTGCATCC-TCT--CGTA-A-TTGTTT--C---CT-TA-C-GTCGG----TTTTTTTC-TCCTTGGACTTTGTTCTCT-GGTCAG-ATCATTTC-TTTAGGC-G-GTCAC-GC-AGC----TT--TGGGAGA-ATATT-C-AT-TTTCG-CG-TTT-GA---ATATTGT-C-TCT-GC-AGGGTT---TCTCGG--TGTCTT-TC-AA---TGTG-TCC-TCAATG-TTTCT-A-AATG-TGTGGC-CTTT-AT---GG------TTTT---CTTTCA-TGCA-TCTG-AT-GC-A-GA---CCGG-AAGC-TTG--CA--TTCCT-GACACGC-CAT--G--TCATA-A---GA-GAATTCT-G-GATGGATGTGACA-G-GTTTCGGTGTTTGGAG-G--TAC---GTG---------T-------GT-TC---------TCTCTCTC-CT-A-GTAA-GGGACGAT-GACGTG-GGATCTGGAGGCATTACTCTTG-CTATGAC-GATCCCGG-CATGCCTGA-CACA-GGTTGTCGGT-TCAG-GTG-T-TACAGTA-ATAT-TC---AG--CGTTCGC-CTT-ACACTG-TGTA-CA-CTCCAC-ATAGT-GCTGG--GCA--AACTTT-Agatataagtctcatac
gi|6 : TTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-ATGATCC-GGC-CTTTC-TCGT------CTC-CAAC--CCAA-A-C---TTTGTC-----TA-CAGAT-C---CA-CAG-GAAATATGACGTAAA--GTAT-CA----AGGGG--T--ATATCGAATTCC-CGA--CATTTTACAAC--AGAATC----GATGGA-A-ATATG-ATCTTTTG-GCACGTTTCT---A---C-----TTTT-T-GA-AA--T---T--T----G---TTGGT-TTAGTT-TTCCAT-----ACGTAGATG---TTTT-CGG-C---ATACTTA----G-TTTA---C--CAAA------CA--GC-TTCAT--G--ACCC-GCG-TCCTTGT-TGA-TGGTTTTCTG-GTTG-G-TA-CT-G-AGG-ATTTTC-T-ATGCTT--G---AA--TTC--G-G-CT-CT-AT-AACTTCAGACTGGAGGA-TTC-ATTT--CGCAGCGCTA-GC-TTCTCGC-A----AGGTCC--TTTTCTTCA-TCTTC--AAATCTGT-CG---A-TGAAATC-TTCATAGTTG--GATATAAAA-CGCGA--ATAATGG--TG-T-TTGA-TTTTCGAA-TTCCT-CATC-----G-ATAGA--TTTGTCG-CGAT-A--T--CA-----------AG--AT-C-C-CGA-GGTTTT---C-C-G--GA-AA---GT-GT--CTA-CTAAATCCTT-AAT-CTG-TTTGCGTCT-TC---TCCA-G-TCGTCT--C---CT-TAT--GTCGG----TTCTACTC-TCTTatttataaaatattgaaaagtatcgtgtatatgtccgtaagtggtcga
gi|6 : ctgT---CTTTCA-TACA-GCTG-AT-GC-A-AA---CCGG-AAGC-TTG--CA--TTCCT-GAgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtctttcatacagctgatgcaaaccggaagcttgcattcctga
gi|7 : ctgttttaatctcgtccagtttgtttccagtcttgtccatgagcatgatccggcctttctcgtctccaacccaaactttgtctacagatccacaggaaatatgacgtaaagtatcaaggggtatatcgaattcccgacattttacaacagaatcgatggaaatatgatcttttggcacgtttctactttttgaaatttgttggtttagttttccatacgtagatgttttcggcatacttagtttaccaaacagcttcatgacccgcgtccttgttgatggttttctggttggtactgaggattttctatgcttgaattcggctctataacttcagactggaggattcatttcgcagcgctagcttctcgcaaggtccttttcttcatcttcaaatctgtcgatgaaatcttcatagttggatataaaacgcgaataatggtgtttgattttcgaattcctcatcgatagatttgtcgcgatatcaagatcccgaggttttccggaaagtgtctactaaatccttaatctgtttgcgtcttctccagtcgtctccttatgtcggttctactctcttgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnng-C-TT-TTTCG-CG-GTTTGA---ATCTTGT-C-TCT-GC-ATGGAT---TCTCGG--TGTCTT-TC-AA---TGTG-TCC-TTAATG-CTCTTGA-A-TG-TATGAC-CTT-CAT---GG------TTTT---CTTTCA-TGCA-TCTA-AT-GC-A-AA---TAGG-AAGA-TTG--CA--TTCCT-GACACGC-CAT--T--TCGTATG---AG-GAATTCT-G-GATGGA-GTGACAGG-ATTC-GGTGTTTGGAG-A--T-----GTG-----------------GTCT-----------CTCTCTC-CT-G-GTAG-GGGACGAT-GACGTG-GGATCTGGTGGCTTTGCTCTTGTGTGTGAC-GGTCCCGG-CATACCTGA-CACA-GGTTGTCGGT-ACAG-GTG-T-TACAGTA-A-ATATC---AG--CGTTCGC-CTC-ACACTG-TGTA-CA-CTCCAC-ATAGT-GCTGG--GCG--GACTTT-ATG--TCCCGTCT-G--GACATCTG-T--AGATTGTAAACAAAAAAATT--TTAAAAA--CACAATAGCATGATAATATTACAAA-ATATG-GTTTCT--TT--AGGGGGTGTGAT--TTATTTCTTCATATAATCATTTA--TCT----TAA--AATGCACATAT-TAAACTGAGAGGTTTGTGCAGATAAAATGT---G---TTTA-TCC---TGAT-TCA--AAAAAT-ATAGAAAA-------GAACAAACAA-------ATTCCCAC--A-----TGCA-AAGT------ACAAAACG---A-AAGTTG------AAAATA-A-ATATTT-TTCAAAAACA------TCAAA-ATTTTA---TCACAATC-TA-TCAT-ACTC----ACAAGTT-ATGTAACATACCTG--CTTGAATACAAAGTGTAA-ACACTCAGCTGCAGT-CCAGTTATGTCGTAA-ATTTGGGTAG-ATCTATATGACAAATTATGGATGA-----CCGGGTAACAGATAGCTCTATGGAACGCCGCC---TATGTAAC-AACATTATATAAATGTGT
gi|8 : CA-TACA-TCTG-AT-GC-A-GAT--C-GG-AAGC-TTG--CA--CTCCT-GACA
gi|8 : T-ACAA-GTG-T-TACAGTA-ATAT-TC---AG--CGTTCGC-TTC-ACACTG-TGTA-CA-CTCCAC-ATAGT-GCTCG--CCA--AACTTT-ATA--TCCCGTCT-G--GACATCTG-T--AGATTGT-A--AACAAAAC-----AAAAAA-CGTAA----ATAAT--CA--ACAAA-ATATGCA-TTGT-------AGATATATAGT--ATATTAC------TATTTGTTTGATTCTGCGATAAACATCGAAC-TGTGTAAGATGAGAAGG------GGA-AAAA---------------------CGA---AAACAAAAACAAAAAAAAA-------GAAGAAAAAAGGAAGTGGTTTCCAT--T-----AGCA-AAGTAAAGAAATAAAACG---A-AAGTTG------CAAAAA-A-ATAATT-TT-AAAATTATGGAATTCAAA---TTCA---TCACAAGCA-ATT-ATCACTCAGTAACAA-TTGCTGTAAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaagtgttacagtaatattcagcgttcgcttcacactgtgtacactccacatagtgctcgccaaactttatatcccgtctggacatctgtagattgtaaacaaaacaaaaaacgtaaataatcaacaaaatatgcattgtagatatatagtatattactatttgtttgattctgcgataaacatcgaactgtgtaagatgagaaggggaaaaacgaaaacaaaaacaaaaaaaaagaagaaaaaaggaagtggtttccattagcaaagtaaagaaataaaacgaaagttgcaaaaaaataattttaaaattatggaattcaaattcatcacaagcaattatcactcagtaacaattgctgtaaaaaaggaaataactataattgacccacgtgaaatttcataaaacaagtatcagtataggcttccgtgtaagtacattcactataccgctatatatagaataaattcccctgccatagctgcacttgacggaaattctgaattgaaatgaaaatatttgccagtatgtagttataaaaaaaaccatacggttacctgcttaactatagattgtcaaattgcagtcggaattcgtcgtcaa
gi|9 : catacatctgatgcagatcggaagcttgcactcctgacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGACTG-AGGATTTT--TTT--GGCAG-GCTA----CTCT-GC-A----TGGTCCACTTTTCTTTA-TCAT---AAACC-GT-CA---A-TGAA-TC-TTCATA-TTA--GATATAGA---GAGAATATA-TGGC-TG-TCTTGA-TTTTCGAAATTCTT-CATCC--TGG-AT--A--TT-GT-GCTGAT-A--T--CA-----------AGT-AT-CTTACGA-GTTTTT---TTCTG--GA---ATGGCCGTA-CTA-CTAA-TCC---AAT-CTGTTTTGCATCC-TCG--CGCA-GATCGTCT--C---CT-TATCTGTCGG----TTCTCTTC-TCCTTTGACTT-GTTCTCT--ATCGG-ATAATTTTCTTTAAG-------GC-GC-AGCAAGATT--TGG-AAG-ATATT-C-TT-TTTCGGCG-TTTTGA----TCTTGTTC-TCT-GC-AGGGTT---TCTGA---TGTCTT-CA-AA---TGT--TCG-TCAATG-TTTCTGA-A-TG-TGTGGC-CTTT-AT---G-------GTTT---CTTTCAATAAA-TCT---T-AC-A-GA---C-GG-AAGT-TTG--CAAGTTC---AGCAC-C-CAT--G--TCGTA-A---GA-GAATTAT-GTGATGGA-------------------TTGACAGGA--T-C---GCG---------TTTTGGAGATGTG---------TCTCTCCT-CT-GTGTAG-GG-ACGAT-GACGTG-GGATCTGGTGGCTTTGCCATTT-GGGTGAC-GGT-CCGG-CATA-CTGA-CACA-AGTTGTCGGT-ACAG-GAT-T-TACAGTATATAT-TC---AAGTCGTTCGCGCTCTACACTG-GTTA-CA-CTCCACAATAGT-GCTGGCTGCAATAACTTT-ATG----CCGTCT-A--GACATCTG-T--AAATGGT-C--GACAAAAaaaaggaaataactataattgacccacgtgaaatttcataaaacaagtatcagtataggcttccgtgtaagtacattcactataccgctatatatagaataaattcccctgccatagctgcacttgacggaaattctgaattgaaatgaaaatatttgccagtatgtagttataaaaaaaaccatacggttacctgcttaactatagattgtcaaattgcagtcggaattcgtcgtcaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTTCTGATTAGCAGGTTGTGGGTCTTCAGTCACTGCGTGGTGTGATTTCGTTGTATGCTGTCATTTGATTCGTCCGATGTACAGATAAATCACCAACCCGAGTACAGACGTGAAGAAGCCGAACATAAAGA
Unaligned ( gi|18 ): GTTCTGATTACAGTTGTGGTCTTCCTTTCTGATGTGTATTTCTTTATACTGTTGTTTGAGCTGTCGATGTACAGTAAATCACCATCGTAAGTCACCGCAAGA
Unaligned ( gi|19 ): CATCGCAAGTCACTGCTTTTTGTGATAACCGTTAAATGAGC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 111111 111 11111 11111 222222222222222222222222222 4444444444444444444 22222222222222222 1111 11111 22222 111111 1111 111111 11 11 11111 11111 11 33333333333333 22222222222 11 1 1 11111 11 1 11 222 111 111 111 1111 1111 1111 11 1 1111 111 111 1 111111111 111 22222 11111 11111 3333333333333333333333333333333333333333333333333333333333333333333333 111 22 11 1111 33333 222222 11 22222222 11 11 222222222222222222222 1 1 666666666666666666666666666 2222222 22222222 33333333 222222222 111 222222 1111 22222222 11 111 1 2222 11 1 1 1 1 1 1 11 1 22222 222 1 1 1
lowQualScore : 8 4 4 666 55 4 8888 4 4 4 4 4 55 4 44 4 0 4 111111 4 55 4 4 111 00000 55 66666 4 4 0 7 666666666666666666666666666 0 8 55 55 1111111111111111111 4 77777777777777777 4 4 4 66 777 66 8888 9999999 4 4 22222 888 5 55555 555555 8888 66 222222 66 4 66 66 4 55 4 4 4 4 4 4 11 4 4 4 4 4 4 66 4 00 88 5 5 5 5 5 5 77 4 1 5 8 0 1 5 22222 0 55 5 77 3 5 00000 5 77 88 77 0 5 5 5 5 5 5 55555555555555 4 8888 77 77777777777 33 1 0 5 1 33333 33 5 2 1 33 5 0 5 5 5 777 111 77 000 5 999 0 2222 5 6 6 1 6 88 2222 3 6 6 4444 88 6 6 3 1 5 5 5 77 5555 5 5 5 5 0 555 66 5 5 5 000 1 5 1 5 0 5 7 5 5 555555555 333 777 4 4 4 4 4 4 55555 4 4 66 66 4 6 6 77777 11111 6 6 6 3333333333333333333333333333333333333333333333333333333333333333333333 2 6 000 6 6 6 1 99 1 6 6 6 6 5 5 5 5 5 5 888 66 5 5 5 5 5 5 5 66 66 5 11 5 33 5 77 4444 2 00000 1 66 000000 88 0 6 888 88888888 333 99 66 66 0 11 11 666666666666666666666 0 888 3 5 777777777777777777777777777 77 8 1 6666666 0 3 99999999 55555555 8 444444444 444 8 0 333333 88 8 1 2222 77777777 0 33 444 1 66 3 5 8 1111 2 6 77 1 5 5 5 5 5 5 1 88 5 1 1 66666 1 1 000 5 5 5
lowQualScore : . . . ... .. . .... . . . . . .. . .. . . . ...... . .. . . ... ..... .. ..... . . . . ........................... . . .. .. ................... . ................. . . . .. ... .. .... ....... . . ..... ... . ..... ...... .... .. ...... .. . .. .. . .. . . . . . . .. . . . . . . .. . .. .. . . . . . . .. . . . . . . . ..... . .. . .. . . ..... . .. .. .. . . . . . . . .............. . .... .. ........... .. . . . . ..... .. . . . .. . . . . . ... ... .. ... . ... . .... . . . . . .. .... . . . .... .. . . . . . . . .. .... . . . . . ... .. . . . ... . . . . . . . . . ......... ... ... . . . . . . ..... . . .. .. . . . ..... ..... . . . ...................................................................... . . ... . . . . .. . . . . . . . . . . . ... .. . . . . . . . .. .. . .. . .. . .. .... . ..... . .. ...... .. . . ... ........ ... .. .. .. . .. .. ..................... . ... . . ........................... .. . . ....... . . ........ ........ . ......... ... . . ...... .. . . .... ........ . .. ... . .. . . . .... . . .. . . . . . . . . .. . . . ..... . . ... . . .
lowQualScore : 0 0 0 555 55 0 5555 0 0 0 0 0 55 0 55 0 3 0 555555 0 55 0 0 000 00000 00 44444 0 0 6 3 222222222222222222222222222 8 0 55 55 8888888888888888888 4 22222222222222222 4 4 4 11 888 11 9999 2222222 4 4 55555 888 0 77777 666666 3333 11 888888 11 4 11 11 4 66 4 4 4 4 4 4 99 4 4 4 4 4 4 11 4 66 22 0 0 0 0 0 7 99 3 0 7 4 1 7 7 66666 7 99 7 99 0 7 44444 7 99 00 77 1 7 7 7 7 7 7 66666666666666 3 3333 99 11111111111 66 4 1 7 4 99999 66 7 3 4 66 7 1 7 7 7 111 777 99 000 7 666 7 1111 7 7 7 7 7 88 7777 2 7 7 2222 33 7 7 5 4 7 7 7 11 0000 7 7 7 7 7 777 44 7 7 7 000 4 7 4 7 7 7 1 7 7 999999999 888 888 4 4 4 4 4 4 33333 4 4 11 11 4 6 7 33333 88888 7 7 7 0000000000000000000000000000000000000000000000000000000000000000000000 5 7 222 7 7 7 0 22 0 7 7 7 7 0 0 0 0 0 0 888 99 0 0 0 0 0 0 0 99 99 0 11 7 66 7 99 3333 5 44444 0 44 222222 66 8 7 777 33333333 000 22 66 00 8 66 00 888888888888888888888 6 444 8 4 000000000000000000000000000 00 0 4 0000000 8 8 22222222 66666666 0 666666666 000 0 8 000000 88 0 0 6666 00000000 8 66 000 0 55 2 0 8 2222 5 5 55 0 5 0 0 5 0 5 0 00 5 0 0 00000 0 0 555 0 5 5
consensus : TTTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-ATGATCC-GGC-CTTTC-TCAT------CTC-CAAC--CCAA-A-C---TTTGTC-----TN-CAGAT-G---CA-CAG-GAAATATGGCGTGAA--TTTT-TA----GNGGG--C--GCGTCGAATTCC-AGG--CATTTTACAGG--AGAACC----AATAGA-A-AT-T--ATCTCTTG-ACACGT---T---AAG-T-----TTTT-T-GA-AA--T---T--T----G---T---T-TTGGTT-TTTCAT-----GCGTAGATT---TCTT-CGGCC---ATACTTA----G-TTT----C--CAAA------CA--GC-TTCAT--G--A-CC-GCG-TCCTTGT-TGA-TGG-TTTCTG-GTTG-GTTA-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--TTC-AG-G-CT-CT-GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGCNA-GCTTTCTCGT-A----CGGTCC-TTTTTCTTCA-TCTTC--AAACCCGT-CG---A-TGAAATC-TTCATAGCTG--GATATAAAA-CGAGA-TATAATGGC-TG-T-TTGA-TTTTCGAA-TTCCT-CATCC--TGG-AT--A--TTTGTCGCCGAT-A--T--CA-----------AG--AT-CTC-CGA-GTTTTT---C-CTG--GA-GAATGGC-GT--CTA-CTAAATCCTT-AAT-CTGTTTTGCATCC-TC---CGCA-G-TCGTCT--C---CT-TATC-GTCGG----TTCTTTTC-TCCTTGGACTTTGTTCTC-TGG-TCAG-ATAATTTCCTTTAAGC-G-GTCAC-GC-AGC----TT--TGG-AGG-ATATT-C-TT-TTTCG-CG-TTTTGA---ATCTTGT-C-TCT-GC-AGGGTT---TCTCG-G-TGTCTT-TC-AA---TGTG-TCC-TCAATG-CTCTTGA-AATG-TGTGGC-CTTTCA--T---GGTTTT---CTTT---CA-TGCA-TCTG-AT-GC-A-GA---C-GG-AAGC-TTG--CA--TTCCT-GACACGC-CAT--T--TCGTA-A---AG-GAATTCT-G-GATGGA-GTG----G-A----GGTGTTGACAG-A--T-C---GTG---------T-------GTNTG---------TCTCTCTC-CT-G-GTAG-GGGACGAT-GACGTG-GGATCTGGTGGCNTTGCTCTTG-GTGTGAC-GGTCCCGG-CATACCTGA-CACA-GGTTGTCGGT-ACAG-GTG-T-TACAGTA-ATAT-TC---AG--CGTTCGC-CTC-ACACTG-TGTA-CACT-CCAC-ATAGTG-CTGG--GCA--AACTTT-ATGT-TCCCGTCT-G--GACATCTG-T--AGATTGTAA--AACAAAACG--TTAAAAAATCGCAATAGCATGAT-ATATTACAAA-ATATG-G-TTNT--TT--GGGGGGTGTAAT--TTATTTCTTCATATATTCGTTTA--TCT----TAA--ATCGCACATAT-TAAACTGAGAGGNCTGTGCAGATAAAATGT---G---TTTA-TCC---CGAT-TCAACAAAAAT-AAAGAAAA-------GAANAAACAA-------GTTTCCAC--G-----TGCA-AAGT------ATAAAACG---A-AAGTTG------AAAATA-A-ATANTT-TT-AAAAACA------TCAAA-ATTTTA---TCACAANCATATTCATCACTC----ACAAGTTGATGTAACATACCTGGCCTTGAATNCAAAGTGTAAGACACCCAGCTGCAGTCCCAGTTATGTCGTAACATTTGGGTAGAATCTANATGACAAATTNTNGATGACACACCCNGGTAACAGATAGNTCTATGGAACGCCGCCTGGTATGTAACAAACATTATATAAATGTGT
Reference ( family-418 ) : TTTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-ATGATCC-GGC-CTTTC-TCAT------CTC-CAAC--CCAA-A-C---TTTGTC-----TN-CAGAT-G---CA-CAG-GAAATATGGCGTGAA--TTTT-TA----GNGGG--C--GCGTCGAATTCC-AGG--CATTTTACAGG--AGAACC----AATAGA-A-AT-T--ATCTCTTG-ACACGT---T---AAG-T-----TTTT-T-GA-AA--T---T--T----G---T---T-TTGGTT-TTTCAT-----GCGTAGATT---TCTT-CGGCC---ATACTTA----G-TTT----C--CAAA------CA--GC-TTCAT--G--A-CC-GCG-TCCTTGT-TGA-TGG-TTTCTG-GTTG-GTTA-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--TTC-AG-G-CT-CT-GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGCNA-GCTTTCTCGT-A----CGGTCC-TTTTTCTTCA-TCTTC--AAACCCGT-CG---A-TGAAATC-TTCATAGCTG--GATATAAAA-CGAGA-TATAATGGC-TG-T-TTGA-TTTTCGAA-TTCCT-CATCC--TGG-AT--A--TTTGTCGCCGAT-A--T--CA-----------AG--AT-CTC-CGA-GTTTTT---C-CTG--GA-GAATGGC-GT--CTA-CTAAATCCTT-AAT-CTGTTTTGCATCC-TC---CGCA-G-TCGTCT--C---CT-TATC-GTCGG----TTCTTTTC-TCCTTGGACTTTGTTCTC-TGG-TCAG-ATAATTTCCTTTAAGC-G-GTCAC-GC-AGC----TT--TGG-AGG-ATATT-C-TT-TTTCG-CG-TTTTGA---ATCTTGT-C-TCT-GC-AGGGTT---TCTCG-G-TGTCTT-TC-AA---TGTG-TCC-TCAATG-CTCTTGA-AATG-TGTGGC-CTTTCA--T---GGTTTT---CTTT---CA-TGCA-TCTG-AT-GC-A-GA---C-GG-AAGC-TTG--CA--TTCCT-GACACGC-CAT--T--TCGTA-A---AG-GAATTCT-G-GATGGA-GTG----G-A----GGTGTTGACAG-A--T-C---GTG---------T-------GTNTG---------TCTCTCTC-CT-G-GTAG-GGGACGAT-GACGTG-GGATCTGGTGGCNTTGCTCTTG-GTGTGAC-GGTCCCGG-CATACCTGA-CACA-GGTTGTCGGT-ACAG-GTG-T-TACAGTA-ATAT-TC---AG--CGTTCGC-CTC-ACACTG-TGTA-CACT-CCAC-ATAGTG-CTGG--GCA--AACTTT-ATGT-TCCCGTCT-G--GACATCTG-T--AGATTGTAA--AACAAAACG--TTAAAAAATCGCAATAGCATGAT-ATATTACAAA-ATATG-G-TTNT--TT--GGGGGGTGTAAT--TTATTTCTTCATATATTCGTTTA--TCT----TAA--ATCGCACATAT-TAAACTGAGAGGNCTGTGCAGATAAAATGT---G---TTTA-TCC---CGAT-TCAACAAAAAT-AAAGAAAA-------GAANAAACAA-------GTTTCCAC--G-----TGCA-AAGT------ATAAAACG---A-AAGTTG------AAAATA-A-ATANTT-TT-AAAAACA------TCAAA-ATTTTA---TCACAANCATATTCATCACTC----ACAAGTTGATGTAACATACCTGGCCTTGAATNCAAAGTGTAAGACACCCAGCTGCAGTCCCAGTTATGTCGTAACATTTGGGTAGAATCTANATGACAAATTNTNGATGACACACCCNGGTAACAGATAGNTCTATGGAACGCCGCCTGGTATGTAACAAACATTATATAAATGTGT
gi|1 : TTTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----C-G-TCTTG-T-CC-ATGA--GC-ATGATCT-GGC-CATTC-TCAT------CTC-CAAC--CCAA-A-CG--TTTGTT-----TC-CAGAT-A---CA-CAG-GAAATCTGGCGTGAA--TTTT-TA----GTGAG--C--GTTTTGAATTCC-AGG--CATTTTACAGG--AGAACC----AATAAC-A-AT----ATCCTTTG-ACACGT---G---AAG-T-----TTTT-T-GA-AA--T---T--T----G---T---T-TTGGTT-TT--AA-----ACGTAGAAT---TTTT-CGGCC---ATACTTA----G-TTC----C--CAAA------CA--GC-TTCAT--G--A-CC-CCG-TCCTTGT-TGA-TGG-TTTCTG-GTTG-GTTA-CT-G-AGG-ATTTTC-T-ATGCT---G-GTAA--TTC-AG-G-CT-CC-TA-AACTTCAGA-TGGAGGATTTC-ATTT--CGCAGCGCAA-GCTTTCTCGT-A----CGGTCC-TTTTTCTTCG-TCTTC--AAACCCGT-CA---A-TGAAATC-TTCATAGTTG--GATATAAAA-CGAGA--ATAATGAC-TG-T-TTGA-TTTTCGAA--TCCT-CATCT--TGG-A---A--TTTTTCGCCGAT-A--T--TA-----------AG--CT-CTC-CGA-GTTTTT---C-CTC--GA-GAATGGC-GT--CTA-CTAAATCCTT-AAT-CTGTTTGGCATCT-TC---CGCA-G-TCGTCT--C---CT-TATC-GTC-G----TTCTTTTC-TCCTTGGACTTTGTTCTCTTGG-TC-G-ATAATTT-CTTTAAGC-G-G-CAC-GC-AGC----TT--TGG-AGG-ATATT-C-TTGTTTCG-CG-TTTTGA---ATCTTGT-C-TCT-GC-A-GGTT---TCTC--G-TGTCTC-TT-AA---TGTGCTCC-TTAATG-CTCTTGG-AATG-TATGAC-CTTTCG--T----GTTTT---CTTT---CA-TGCA-TCTA-AT-GC-A-GA---T-AG-AAGC-TTG--CA--TTCCT-GACAC-C-CAT--T--CTATA-A---AG-TAATTC--G-GATGGA-GTG----GAA----AGTGTTGACAG-A--T-C---GTG---------T-------GTGT----------TCTCT-TC-CTGG-GTAG-GGGAC-AT-GACGTGCGGA-CTGGTGGCTTTG--CTTG-GTGTGAC--GTCCCGG-CATGCCTGG-CACAGGGTTGT-GGTAACA--GTG-T-TACAG-A-ATAT-TC---AG--CGTTCGC-CTC-ACACTG-TGTATCACT-CCAC-ATAGTG-CTGG--GC---AACTTT-ATGT-CCCCGTCT-G--GACATCTG-T--AGATTGTAA--AACAAAACATTTTAAAAAATCACAATAGCATGAT-ATATTACAAAGATATG-G-TTCT--TTGGGGGGGGTGTAAT--ATATTTCTTCATATATTCA-TTA--TCT----TAA--ATTGCACATAA-TACACTGAGAGGACTGTGCAGATAAAATGT---G---TTTA-TCC---TGAT-TTAGTAAAAAT-ATAGAAAA-------GAACAAACAA-------GTTCTCAC--A-----TACATAAGT------AGCAAACG---AGAAGTTG------AAAATAGA-ATATTTATT-AAAAACA------TCAAA-ATTTTA---TCACAAATATATTCATAACGC----ACAAGTTGATGTAACATACCTGGCCTTGAATCCAAAG-GTAAGACACCCAGCTGCAGTCCCAGTT-TGTCGTAACATTTGGGTAGAATCTAGA--AC-AATTTTTGATGACACACCCCGGTAACAAATAGATCTATGGAACGCTGCTTGGTAT-TAACAAACA-TATATAAATGTGT
gi|10 : GT-ACAG-GTG-TATACAGTA-ATAT--C---AG--CGT-CGC-CTC-ACACTGCTGTA-CATT-CCAC-A-AGTG-CTGG--GCA--AACT-----AT-TCCCGCCT-G--GA--TCTG-T--AGATTGT-A--AACAAAACG---TAAACAATC-----AGCATTAA-ATATTTTAAA-AAAAA-A-TTG----T--AGATAGTACTAG--TTATTATTACA---ATTTGT-------T----TAA--TTCTCCC------AAAC--AGAGGCTAGTGC----AAACTGTTACGGATTTTACTCCGTGCGGTATCAAAAAAAAA-AAAAAAAAATCGTGCAAAGAAACAA--------TCTCTGC--AGCAATTGCA-AA--------ATAAAACGCCAA-AAG-TGAAACACAAAATA-ATATGATT-TT-AAAAG-A------TC-----TTTTAATTTTATAGCCATATT--TCATTC----ACAAGCAAATGTa
gi|11 : TTTTTAATCTTC-GTTTCAGCT-T--TTG-CTTTCTTCTA-GATCTTGAT-CCTATTA--GCCATAATCA-GGC-CTCTT-TTATTCATTTCTC-AAAC--CCAA-A-TCTTTTTGTC-----TA-CAGAT-TATTTA-CAG-GAAATCTGTATTGAAAATCTT-GA----GAGGA--C--ACTTTGAATTCC-AGA--CATTTTACAGG--AGAACC----AATAGATATAT-G--ATCTGTTG-ACACGA---C---ACG-T-----TTTT-TGGA-AA--T---T--T----GTTCT---T-TTGGTT-TTTCAT-----GCGTCGACT---TCTT-TGG-C---ATACTTA----GTTTT----C--CAAA------CATCGC-TTCAT--G--A-CC-CGG-TCCTTGT-TGA-TG---TTCGG-TTTGTGTTA-AC-G-AGG-A-TTTC-T-ATGCTT--G-GTAA--TTC--G-G-CTGCT-GTAAACTTCccctcagaagtttattgcttaagaatggatataactgggtatgtaactagaaaatgtgaaattttcatttaagcagtctgctgtatattgtctagaagtatttccgccgggcctgatgctctgtacattaaattagatgagctacttgacagcgaattctgacaaagataggtgaatagaaataaatatatattagtcgagtaacgtagttataaaaaaaattactgcttatagcttaagagacaaaagtgtacaaaattcgccagttggaattagtcgtga
gi|12 : aatttgTTTTAATCTTC-GTC-CAGGTTT--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-CCGATTT-TGC-TATTC-TCAT------CTC-CAAC--CCAA-A-C---TTTGTT-----TC-CAGAT-A---CA-CAG-GAAATCTGGCGTAAT--TTTT-TA----GTGAG--C--GTTTTAAATTCC-AAG--CATTTTACAGG--AGAACC----AATAAC-A-A--T--ACCCCTTG-ACACGT---G---AAGTT-----TTTT-T-GA-AA--T---T--T----G---T---T-TTGGTT-TTTCAA-----ACGTAGATT---TTTT-CGG-C---ATACTTAC---T-TTT----C--CAAA------CA--GC-TTCAT--G--G-CT-GCG-TCCTTTT-TTA-TGA-TTTCTG-GGTG-G-TA-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--
gi|13 : tctgATCT-C-GTC-CAGC--T--TTC-TTTCC----A-G-TTTTG-T-CC-ATGA--GC-ATGATCC-A---CCTTC-CAAT------TTC-CTA---CCAA-A-C---TTTGTT-----TT-AAGAG-G---CA-CAG-GAAATAT----TGA----TTC-TATTCTGTAGA--CCAACATCG-ATTCCAAAG--CATTTT-TAAG--AGAACCG---AACAGA-A-A--T--ATCTCTTG-G-ACGG---C---AAG-C-----GTCTAT-AA-CA--C---T--TAAGCG---T---TCTTTGTTATTTCAT-----
gi|14 : tgttgtatTTGTAATCT-C-GTC-CAG---T--TTTCTTTCC----A-G-TTTTG-TTCC-ATGA--GC-ATGATCC-AGCACTTCC-TCAT------TTC-CTAC--CC-A-A-C---TTTGTT-----TA-CAGAG-G---CA-CAG-GAAATATGTTCT-AA--TTCTGTA-----TCCA--C--ACATCGAATT-C-AAA--CATTTTA-AGA--GGAACC-----ACAGA-A-A--T--ATCTCTTG-AGACGT---T---AAT-T-----TTTC-C-AATAA--T---T--TTGGGG---G---T-TTGGTT-TTaatgt
gi|15 : ctgTTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-ATGATCT-GGC-CATTA-TCAT------CTC-CAAC--CCAA-A-C---TTTGTT-----TC-CAGAT-A---CA-CAG-GAAATCTGGCGTGAT--TCTT-TA----GTGAG--C--GTTTTGAATTCC-AGA--CATTTTACAGG--AG
gi|17 : ctgGTC---ATACCTGTTGTG-CTC----C--CAAAAACATACA--G---TCACTGG--A-TC-GCG-TCCTTGTCTGA-TGG-ATTCTG-GTTG-GT-A-CTCG-AGG---TTTC-T-ATGCTT--G-GTAA--TTC-AG-G-CT-CTGGT-AA
gi|2 : atacttaggtTTGTTAATCT-CCGTC-CAG---TATTTG-TTTCC----ATG-ACT-G-T-CA-A-GATAGC-A-GATTCTGGC-CTTTCACCAT------TTCTCAACAGCCAATATC---TTTGTCGTGTGTATCAGATTGT--CATCAGTGAAATATT-CG-GAA-------------GAAGATTC--ACGTCGA-TTCC-GAGATCATTTTACCGGTTCTAACCTTTAAGTATG-A-GT-TTCATCTCCCGGACACGT---T---TCG-TATTTTTTTT-T-GG-AA--TATTT--T----G---T---T-CCGGTT-TTTCATATGGGGCGTAGATTATTTCTTTCGGCAGGAATTCTTA----G-TTT----TTTCAAG------CA--GC-TTCAT--GTTA-CCCGCGGTCCTTGT-TGAGTGG-TTC--G-GTTG-GTGATCT-GTAGGTATTTTCAT-ATGCTT--GTGTAAATTTCTAGTGTCT-CG-TT-AACTTCAGACTGGATGATTTCTATTTTTCGCAG-GCAACGCTTTCTTGT-AATGGTGGT---TTTTTCTTCAATCTTTCAAAACCCCT-CG---AATAAAATC-TTCATAGCTG--GAAATAAAG-CGAGA-TATGATGCC-TGTT-TTGA-TTTCGAAA-TTCTTACA-CCGATGGCAT-----TTTGTCG-CGAT-T--T--TATAATTGTTTCTAGTTATCCTT-CGATGTTTTC---G-CTG--GA-GAGTGGT-TTTGCTAGCTAAATCCTTAAAT-TTGTTTTGCATCC-TC---TGTATA-TTGTTT--CGCTTT-TACT-GTCTGTGTTTTTTTTTCTTCCTTGATCTTTGTTCTC-TGG-TCAG-ATCATT--CTTTAAGG-GCGTCACTGCTAGC----TTTGTGG-AGA-AAGTTGCATT-TTTCG-CG--TTTGAAATATTTTGT-CTTCT-GC-AGGGTTTTCTTTCGTGTTGTCTTGTC--A---TGTGTTCC-TC-ATG-TTTTTTCTAATG-TGTGGT-ACTTTATTT---GGTTTTTTCTTTT---CA-TGCA-TCTG-AT-GC-A-GAC--C-GG-AAGCTTTG--CA--TTCCT-GACACG
gi|20 : ttctgatttattctagttgtcggtcttcctttcggattgttgtactttatactgttgcttgagcgtcgattgtacagtaaatcaccatcggtaatgtcatccgttgtcttaagataaccgatacattgaaagggacgcatagatggTACAAA-ATGTG-G-TTTC--TTTAGGGGGGTGTAAT--TTATTTCaaggcgtcatgttcagtattttagagattatttttctggagtgatgtggatcaggttttttcggtttgtttttggtatgtgtttatcgtgtgttctctgttcgtcct
gi|3 : TTTTAATCT-C-GTC-TAG---T--TTG-TTTCC----A-G-CCTTG-T-CC-ATGA--GC-ATGATCT-GGC-CTTCC-TCAT------CTC-CAAC--CCAG-A-C---TTTGTC-----TG-TAGAT-A---CA-CAG-GAAATATGACGTGAA--TGTT-TT----GAGGG--C--ACATTAAATTCA-AGG--CACTTTACTGG--AGAACC----------------------TTTTG-CCATGT---T---CAG-T-----TTTT-T-AA-AAATT---TGCT----G---T---T-TTGGTT-TTTCAT-----GCGTAGATT---TCTT-CGG-C---ATATTTA----GTTTT----C--CAAA------CA--GC-TTCAT--G--A-CC-GCG-TCCTTGT-TGA-TGA-TTTCTG-GTTG-G-TA-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--TTC-AG-C-CT-CT-GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGATA-GC-TTCTCAT-A----CGGCCC-TTTTTCTTTA-TCTTC--AAACCCGTGCGGTCA-TGAAATCGTTCATAGCTGCCGATATAAAA-TGAGA-TATAGTGGC-TG-T-TTGATTTTTCGAA-TT-CT-CATCT--TGG-----A--TTTGTCGCTGAT-ATTT--CA-----------AG--ATGCTC-CGGTGTTTTTCTGC-CTGC-GAGGAATGGCGGT--CCA-CTAAATCCTT-AAT-CTGTTTTGCATCTGTCT--CGCACG-TCGTTTTCC---TT-TAT--GTCGG----TTCTTTTC-TCCTTGGACTTTGTTCTC-TGGTTCAG-ATAATTTCTTTTAAGC-G-GTCAT-GC-AGC----TTGATGG-AGGTATATTGC-TT-TTTCA-CGTTTTTGA---ATCTTGT-C-TCTCGC--GGGTTG--GCTCT-G-TGTCTT-TC-AATATTGTG-TCCTTCCATGTTTCTTGA-AGTGTTGTGGCGCTTTTA--TGTGGGTCTT---CTTCTTGCA-TACATTCTGTAT-GCTA-GATTCT-GGCAAGC-TTGCACA--TTCCC-GAC-CACACATGGT--CCGTA-AAAGAG-GAATTCT-G-GTAGGA-CTG----------------TGACAG-AG-T-CTCGGTGCTTTGGAGAT-------GTTGG---------TC-CTCTCTCT-G-GTAG-GGGACGATAGACGGT-GTATCT-GTG--CTTGCTCTT--GT-TGACGGGTCCCGGACATACCTGACCACA-GGTTGTCGGT-ACAGTGTGTT-TACAGTA-ATAT-TC---AG--C-TTCGC-CTC-ACATCG-TGTA-CACT-CCAC-ATA-TG-CTGA--GCA--AACTTT-ATGG-GCCCGTCTCGGTGACATCTG-TTAAGATTGCAA--GA
gi|4 : tttgGTAGATT---TCTT-TGGC----ATA-TTA----G-TTTTTATC--CAAA------CA--ACATTCAT--G--A-CC--CG-TC-TTGT-TGA-TGG-ATTCTGCGTTT-GTTA--T-G-AGG-ATTTTC-TTATGTTTTTG-GTAAA-TTC-AG-G-CT-CT-GT-AACTTCAGACTGGAGGATTT--ATTT--CGCAGCGCTA-GCTTCTTCGTTA----CG-TCC-TCTT-CTTCA-TCTTC--AACACGGC-CG---T-TGAAATC-TTCATAGTTC--GATAAAAAAACGAGA--ACAATGGCCTG-T-TT-A-TTTTCGAA-TTCCT-TATC-----G-AC--AGATTTGTCGCTGATTA--T--CA-----------AG--AT--TC-CGA-GTTTTT---T-CTGAGGA-GAATGGT-GT--CTA-CTAAGTCCTT-AATACTGTTTGGCATCT-TCATCCACA-G-TCGTCT--C---CTATAT--GTCGT----TTCTTTTC-TCCTCGGACTTTGT-CTC-TGG-TCAGCATAATTTCTTTTAAGTTG-GTCAC-GC-AGC----CT--TTG-CAG-A-ATT-A-TT-TTT-G-CA-TTTTGA----TCTTGT-C-TCT-GCCAGGGTT---TCTTG-G-TGTTTT-TCCAA---TGCG-TCC-TTAAT--CTCTTGA-AACG-TATGAC-CTT-CA--T---GGTTTTT--CCTT---CA-TACA-TCTG-ATTGC-ATAA---C-GG-AAGC-T-G--CA--TTCCTTGACACGC-CAT--TGTTCGTA-A---AGAGAATTCTTG-GATGGA-----------------TGT-GACAG-GATT-C---GGG---------T-------GTCTGGAGATATTGCCTCTATT-CT-T-GTATTGGGACGAT-ATCGTG-GGATCTG-TGGCGTTGCTCTTG-GTGTGAC-GGTCCCGG-CATACCTGA-CACA-GGTTGTCTGT-ACAG-GTG-T-TACAGTA-ATAT-TTTCAAG--CGTTCGC-CTC-ACA-TG-TGTA-CATTTCCAC-ATAGTGGCTGG--GCA--AACTTTGATGTGTCCCGTCT-GC-GACATCTGCT--AGATTGTAA--CA-AAAACG--T-AAATAATTGTA-------GAT----TTAC-------TG-G-TTATCATT--GG----TACAATAATGAATTTGTCA-AT-TTTGTTTA--TTT----TG----TCG-----AT-TAAAC--AAAGGACTGTGCAAA-ACAA-----------------C---AAA---CAACAACAAT-GAAGACAA-------G---AAACAA-------GTTTACACTTG-----TGCA-AATT-------TAAAACG---A-AAGTTG------AAAAT--A-ACACCT-----AAAAC--------CAAACACTTTA---
gi|5 : TTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-ACTTG-T-CA-ATGA--GC-ATGATCT-GGC-CTTCA-CCAT------CTC-CAAC--CCAA-A-C---TTTGTC-----TA-CAGAT-G---CA-CAG-GAAATACGAAGTAAA--------------------C--ACGTCGA-TTCCGAGA--CATTTTACCGG--CAACCT----AGTATA-A-GT-TTCATCTTCCG-ACACGT---TTCTA---T-----TTTT-T-GA-AA--T---T--T----G---T---T-CCGGTT-TTTCAT-----ACGTAGATT---TCTT-CGGC----ATACTTA----G-TTTT---C--CAAA------CA--GC-TTCAT--G--A-CC-GCG-TCCTTGT-TGA-TGG-TTTCTG-GTTG-GT-A-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--TTC-AG-G-CT-CT-GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGCAA-GCTT-CTTGT-A----TGGTGG-TTTTTCTTCA-TCTTC--AAACCCCT-CG---A-TAAAATC-TTCATAGCTG--GAAATAAAG-CGAGA-TATGATGGC-TG-T-TTGA-TTTTCGAA-TTCTT-CATCC--AGG--C--A--TTTGTCGCTGAT-A--TATCT-----------AG--AT-CCT-CGA-GTTTTT---C-CTG--GA-GAGTGGT-GT--CTA-CTAAATCCTT-AAT-CTGTTTTGCATCC-TCT--CGTA-A-TTGTTT--C---CT-TA-C-GTCGG----TTTTTTTC-TCCTTGGACTTTGTTCTC-TGG-TCAG-ATCATTTC-TTTAGGC-G-GTCAC-GC-AGC----TT--TGGGAGA-ATATT-C-AT-TTTCG-CG-TTT-GA---ATATTGT-C-TCT-GC-AGGGTT---TCTCG-G-TGTCTT-TC-AA---TGTG-TCC-TCAATG-TTTCT-A-AATG-TGTGGC-CTTT-A--T---GGTTTT---CTTT---CA-TGCA-TCTG-AT-GC-A-GA---CCGG-AAGC-TTG--CA--TTCCT-GACACGC-CAT--G--TCATA-A---GA-GAATTCT-G-GATGGATGTGACA-G-GTTTCGGTGTTTGGAG-G--TAC---GTG---------T-------GT-TC---------TCTCTCTC-CT-A-GTAA-GGGACGAT-GACGTG-GGATCTGGAGGCATTACTCTTG-CTATGAC-GATCCCGG-CATGCCTGA-CACA-GGTTGTCGGT-TCAG-GTG-T-TACAGTA-ATAT-TC---AG--CGTTCGC-CTT-ACACTG-TGTA-CACT-CCAC-ATAGTG-CTGG--GCA--AACTTT-Agatataagtctcatac
gi|6 : TTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-ATGATCC-GGC-CTTTC-TCGT------CTC-CAAC--CCAA-A-C---TTTGTC-----TA-CAGAT-C---CA-CAG-GAAATATGACGTAAA--GTAT-CA----AGGGG--T--ATATCGAATTCC-CGA--CATTTTACAAC--AGAATC----GATGGA-A-ATATG-ATCTTTTG-GCACGTTTCT---A---C-----TTTT-T-GA-AA--T---T--T----G---TTGGT-TTAGTT-TTCCAT-----ACGTAGATG---TTTT-CGG-C---ATACTTA----G-TTTA---C--CAAA------CA--GC-TTCAT--G--ACCC-GCG-TCCTTGT-TGA-TGGTTTTCTG-GTTG-G-TA-CT-G-AGG-ATTTTC-T-ATGCTT--G---AA--TTC--G-G-CT-CT-AT-AACTTCAGACTGGAGGA-TTC-ATTT--CGCAGCGCTA-GC-TTCTCGC-A----AGGTCC--TTTTCTTCA-TCTTC--AAATCTGT-CG---A-TGAAATC-TTCATAGTTG--GATATAAAA-CGCGA--ATAATGG--TG-T-TTGA-TTTTCGAA-TTCCT-CATC-----G-ATAGA--TTTGTCG-CGAT-A--T--CA-----------AG--AT-C-C-CGA-GGTTTT---C-C-G--GA-AA---GT-GT--CTA-CTAAATCCTT-AAT-CTG-TTTGCGTCT-TC---TCCA-G-TCGTCT--C---CT-TAT--GTCGG----TTCTACTC-TCTTatttataaaatattgaaaagtatcgtgtatatgtccgtaagtggtcga
gi|6 : ctgT---CTTT---CA-TACA-GCTG-AT-GC-A-AA---CCGG-AAGC-TTG--CA--TTCCT-GAgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtctttcatacagctgatgcaaaccggaagcttgcattcctga
gi|7 : ctgttttaatctcgtccagtttgtttccagtcttgtccatgagcatgatccggcctttctcgtctccaacccaaactttgtctacagatccacaggaaatatgacgtaaagtatcaaggggtatatcgaattcccgacattttacaacagaatcgatggaaatatgatcttttggcacgtttctactttttgaaatttgttggtttagttttccatacgtagatgttttcggcatacttagtttaccaaacagcttcatgacccgcgtccttgttgatggttttctggttggtactgaggattttctatgcttgaattcggctctataacttcagactggaggattcatttcgcagcgctagcttctcgcaaggtccttttcttcatcttcaaatctgtcgatgaaatcttcatagttggatataaaacgcgaataatggtgtttgattttcgaattcctcatcgatagatttgtcgcgatatcaagatcccgaggttttccggaaagtgtctactaaatccttaatctgtttgcgtcttctccagtcgtctccttatgtcggttctactctcttgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnng-C-TT-TTTCG-CG-GTTTGA---ATCTTGT-C-TCT-GC-ATGGAT---TCTCG-G-TGTCTT-TC-AA---TGTG-TCC-TTAATG-CTCTTGA-A-TG-TATGAC-CTT-CA--T---GGTTTT---CTTT---CA-TGCA-TCTA-AT-GC-A-AA---TAGG-AAGA-TTG--CA--TTCCT-GACACGC-CAT--T--TCGTATG---AG-GAATTCT-G-GATGGA-GTGACAGG-ATTC-GGTGTTTGGAG-A--T-----GTG-----------------GTCT-----------CTCTCTC-CT-G-GTAG-GGGACGAT-GACGTG-GGATCTGGTGGCTTTGCTCTTGTGTGTGAC-GGTCCCGG-CATACCTGA-CACA-GGTTGTCGGT-ACAG-GTG-T-TACAGTA-A-ATATC---AG--CGTTCGC-CTC-ACACTG-TGTA-CACT-CCAC-ATAGTG-CTGG--GCG--GACTTT-ATG--TCCCGTCT-G--GACATCTG-T--AGATTGTAAACAAAAAAATT--TTAAAAA--CACAATAGCATGATAATATTACAAA-ATATG-GTTTCT--TT--AGGGGGTGTGAT--TTATTTCTTCATATAATCATTTA--TCT----TAA--AATGCACATAT-TAAACTGAGAGGTTTGTGCAGATAAAATGT---G---TTTA-TCC---TGAT-TCA--AAAAAT-ATAGAAAA-------GAACAAACAA-------ATTCCCAC--A-----TGCA-AAGT------ACAAAACG---A-AAGTTG------AAAATA-A-ATATTT-TTCAAAAACA------TCAAA-ATTTTA---TCACAATC-TA-TCAT-ACTC----ACAAGTT-ATGTAACATACCTG--CTTGAATACAAAGTGTAA-ACACTCAGCTGCAGT-CCAGTTATGTCGTAA-ATTTGGGTAG-ATCTATATGACAAATTATGGATGA-----CCGGGTAACAGATAGCTCTATGGAACGCCGCC---TATGTAAC-AACATTATATAAATGTGT
gi|8 : ---CA-TACA-TCTG-AT-GC-A-GAT--C-GG-AAGC-TTG--CA--CTCCT-GACA
gi|8 : T-ACAA-GTG-T-TACAGTA-ATAT-TC---AG--CGTTCGC-TTC-ACACTG-TGTA-CACT-CCAC-ATAGTG-CTCG--CCA--AACTTT-ATA--TCCCGTCT-G--GACATCTG-T--AGATTGT-A--AACAAAAC-----AAAAAA-CGTAA----ATAAT--CA--ACAAA-ATATGCA-TTGT-------AGATATATAGT--ATATTAC------TATTTGTTTGATTCTGCGATAAACATCGAAC-TGTGTAAGATGAGAAGG------GGA-AAAA---------------------CGA---AAACAAAAACAAAAAAAAA-------GAAGAAAAAAGGAAGTGGTTTCCAT--T-----AGCA-AAGTAAAGAAATAAAACG---A-AAGTTG------CAAAAA-A-ATAATT-TT-AAAATTATGGAATTCAAA---TTCA---TCACAAGCA-ATT-ATCACTCAGTAACAA-TTGCTGTAAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaagtgttacagtaatattcagcgttcgcttcacactgtgtacactccacatagtgctcgccaaactttatatcccgtctggacatctgtagattgtaaacaaaacaaaaaacgtaaataatcaacaaaatatgcattgtagatatatagtatattactatttgtttgattctgcgataaacatcgaactgtgtaagatgagaaggggaaaaacgaaaacaaaaacaaaaaaaaagaagaaaaaaggaagtggtttccattagcaaagtaaagaaataaaacgaaagttgcaaaaaaataattttaaaattatggaattcaaattcatcacaagcaattatcactcagtaacaattgctgtaaaaaaggaaataactataattgacccacgtgaaatttcataaaacaagtatcagtataggcttccgtgtaagtacattcactataccgctatatatagaataaattcccctgccatagctgcacttgacggaaattctgaattgaaatgaaaatatttgccagtatgtagttataaaaaaaaccatacggttacctgcttaactatagattgtcaaattgcagtcggaattcgtcgtcaa
gi|9 : catacatctgatgcagatcggaagcttgcactcctgacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGACTG-AGGATTTT--TTT--GGCAG-GCTA----CTCT-GC-A----TGGTCCACTTTTCTTTA-TCAT---AAACC-GT-CA---A-TGAA-TC-TTCATA-TTA--GATATAGA---GAGAATATA-TGGC-TG-TCTTGA-TTTTCGAAATTCTT-CATCC--TGG-AT--A--TT-GT-GCTGAT-A--T--CA-----------AGT-AT-CTTACGA-GTTTTT---TTCTG--GA---ATGGCCGTA-CTA-CTAA-TCC---AAT-CTGTTTTGCATCC-TCG--CGCA-GATCGTCT--C---CT-TATCTGTCGG----TTCTCTTC-TCCTTTGACTT-GTTCTC-TA--TCGG-ATAATTTTCTTTAAG-------GC-GC-AGCAAGATT--TGG-AAG-ATATT-C-TT-TTTCGGCG-TTTTGA----TCTTGTTC-TCT-GC-AGGGTT---TCT-G-A-TGTCTT-CA-AA---TGT--TCG-TCAATG-TTTCTGA-A-TG-TGTGGC-CTTT-A--T---GGTTT----CTTT---CAATAAA-TCT---T-AC-A-GA---C-GG-AAGT-TTG--CAAGTTC---AGCAC-C-CAT--G--TCGTA-A---GA-GAATTAT-GTGATGGA-------------------TTGACAGGA--T-C---GCG---------TTTTGGAGATGTG---------TCTCTCCT-CT-GTGTAG-GG-ACGAT-GACGTG-GGATCTGGTGGCTTTGCCATTT-GGGTGAC-GGT-CCGG-CATA-CTGA-CACA-AGTTGTCGGT-ACAG-GAT-T-TACAGTATATAT-TC---AAGTCGTTCGCGCTCTACACTG-GTTA-CACT-CCACAATAGTG-CTGGCTGCAATAACTTT-ATG----CCGTCT-A--GACATCTG-T--AAATGGT-C--GACAAAAaaaaggaaataactataattgacccacgtgaaatttcataaaacaagtatcagtataggcttccgtgtaagtacattcactataccgctatatatagaataaattcccctgccatagctgcacttgacggaaattctgaattgaaatgaaaatatttgccagtatgtagttataaaaaaaaccatacggttacctgcttaactatagattgtcaaattgcagtcggaattcgtcgtcaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTTCTGATTAGCAGGTTGTGGGTCTTCAGTCACTGCGTGGTGTGATTTCGTTGTATGCTGTCATTTGATTCGTCCGATGTACAGATAAATCACCAACCCGAGTACAGACGTGAAGAAGCCGAACATAAAGA
Unaligned ( gi|18 ): GTTCTGATTACAGTTGTGGTCTTCCTTTCTGATGTGTATTTCTTTATACTGTTGTTTGAGCTGTCGATGTACAGTAAATCACCATCGTAAGTCACCGCAAGA
Unaligned ( gi|19 ): CATCGCAAGTCACTGCTTTTTGTGATAACCGTTAAATGAGC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 111111 111 11111 11111 222222222222222222222222222 4444444444444444444 22222222222222222 1111 11111 22222 111111 1111 111111 11 11 11111 11111 11 33333333333333 22222222222 11 1 1 11111 11 1 11 222 111 111 111 1111 1111 1111 11 1 1111 111 111 1 111111111 111 22222 11111 11111 3333333333333333333333333333333333333333333333333333333333333333333333 111 22 11 1111 33333 222222 11 22222222 11 11 222222222222222222222 1 1 666666666666666666666666666 2222222 22222222 33333333 222222222 111 222222 1111 22222222 11 111 1 2222 11 1 1 1 1 1 1 11 1 22222 222 1 1 1
lowQualScore : 8 4 4 666 55 4 8888 4 4 4 4 4 55 4 44 4 0 4 111111 4 55 4 4 111 00000 55 66666 4 4 0 7 666666666666666666666666666 0 8 55 55 1111111111111111111 4 77777777777777777 4 4 4 66 777 66 8888 9999999 4 4 22222 888 5 55555 555555 8888 66 222222 66 4 66 66 4 55 4 4 4 4 4 4 11 4 4 4 4 4 4 66 4 00 88 5 5 5 5 5 5 77 4 1 5 8 0 1 5 22222 0 55 5 77 3 5 00000 5 77 88 77 0 5 5 5 5 5 5 55555555555555 4 8888 77 77777777777 33 1 0 5 1 33333 33 5 2 1 33 5 0 5 5 5 777 111 77 000 5 999 0 2222 5 6 6 1 6 88 2222 3 6 6 4444 88 6 6 3 1 5 5 5 77 5555 5 5 5 5 0 555 66 5 5 5 000 1 5 1 5 0 5 7 5 5 555555555 333 777 4 4 4 4 4 4 55555 4 4 66 66 4 6 6 77777 11111 6 6 6 3333333333333333333333333333333333333333333333333333333333333333333333 2 6 000 6 6 6 1 99 1 6 6 6 6 5 5 5 5 5 5 888 66 5 5 5 5 5 5 5 66 66 5 11 5 33 5 77 4444 2 00000 1 66 000000 88 0 6 888 88888888 333 99 66 66 0 11 11 666666666666666666666 0 888 3 5 777777777777777777777777777 77 8 1 6666666 0 3 99999999 55555555 8 444444444 444 8 0 333333 88 8 1 2222 77777777 0 33 444 1 66 3 5 8 1111 2 6 77 1 5 5 5 5 5 5 1 88 5 1 1 66666 1 1 000 5 5 5
lowQualScore : . . . ... .. . .... . . . . . .. . .. . . . ...... . .. . . ... ..... .. ..... . . . . ........................... . . .. .. ................... . ................. . . . .. ... .. .... ....... . . ..... ... . ..... ...... .... .. ...... .. . .. .. . .. . . . . . . .. . . . . . . .. . .. .. . . . . . . .. . . . . . . . ..... . .. . .. . . ..... . .. .. .. . . . . . . . .............. . .... .. ........... .. . . . . ..... .. . . . .. . . . . . ... ... .. ... . ... . .... . . . . . .. .... . . . .... .. . . . . . . . .. .... . . . . . ... .. . . . ... . . . . . . . . . ......... ... ... . . . . . . ..... . . .. .. . . . ..... ..... . . . ...................................................................... . . ... . . . . .. . . . . . . . . . . . ... .. . . . . . . . .. .. . .. . .. . .. .... . ..... . .. ...... .. . . ... ........ ... .. .. .. . .. .. ..................... . ... . . ........................... .. . . ....... . . ........ ........ . ......... ... . . ...... .. . . .... ........ . .. ... . .. . . . .... . . .. . . . . . . . . .. . . . ..... . . ... . . .
lowQualScore : 0 0 0 555 55 0 5555 0 0 0 0 0 55 0 55 0 3 0 555555 0 55 0 0 000 00000 00 44444 0 0 6 3 222222222222222222222222222 8 0 55 55 8888888888888888888 4 22222222222222222 4 4 4 11 888 11 9999 2222222 4 4 55555 888 0 77777 666666 3333 11 888888 11 4 11 11 4 66 4 4 4 4 4 4 99 4 4 4 4 4 4 11 4 66 22 0 0 0 0 0 7 99 3 0 7 4 1 7 7 66666 7 99 7 99 0 7 44444 7 99 00 77 1 7 7 7 7 7 7 66666666666666 3 3333 99 11111111111 66 4 1 7 4 99999 66 7 3 4 66 7 1 7 7 7 111 777 99 000 7 666 7 1111 7 7 7 7 7 88 7777 2 7 7 2222 33 7 7 5 4 7 7 7 11 0000 7 7 7 7 7 777 44 7 7 7 000 4 7 4 7 7 7 1 7 7 999999999 888 888 4 4 4 4 4 4 33333 4 4 11 11 4 6 7 33333 88888 7 7 7 0000000000000000000000000000000000000000000000000000000000000000000000 5 7 222 7 7 7 0 22 0 7 7 7 7 0 0 0 0 0 0 888 99 0 0 0 0 0 0 0 99 99 0 11 7 66 7 99 3333 5 44444 0 44 222222 66 8 7 777 33333333 000 22 66 00 8 66 00 888888888888888888888 6 444 8 4 000000000000000000000000000 00 0 4 0000000 8 8 22222222 66666666 0 666666666 000 0 8 000000 88 0 0 6666 00000000 8 66 000 0 55 2 0 8 2222 5 5 55 0 5 0 0 5 0 5 0 00 5 0 0 00000 0 0 555 0 5 5
consensus : TTTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-ATGATCC-GGC-CTTTC-TCAT------CTC-CAAC--CCAA-A-C---TTTGTC-----TN-CAGAT-G---CA-CAG-GAAATATGGCGTGAA--TTTT-TA----GNGGG--C--GCGTCGAATTCC-AGG--CATTTTACAGG--AGAACC----AATAGA-A-AT-T--ATCTCTTG-ACACGT---T---AAG-T-----TTTT-T-GA-AA--T---T--T----G---T---T-TTGGTT-TTTCAT-----GCGTAGATT---TCTT-CGGCC---ATACTTA----G-TTT----C--CAAA------CA--GC-TTCAT--G--A-CC-GCG-TCCTTGT-TGA-TGG-TTTCTG-GTTG-GTTA-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--TTC-AG-G-CT-CT-GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGCNA-GCTTTCTCGT-A----CGGTCC-TTTTTCTTCA-TCTTC--AAACCCGT-CG---A-TGAAATC-TTCATAGCTG--GATATAAAA-CGAGA-TATAATGGC-TG-T-TTGA-TTTTCGAA-TTCCT-CATCC--TGG-AT--A--TTTGTCGCCGAT-A--T--CA-----------AG--AT-CTC-CGA-GTTTTT---C-CTG--GA-GAATGGC-GT--CTA-CTAAATCCTT-AAT-CTGTTTTGCATCC-TC---CGCA-G-TCGTCT--C---CT-TATC-GTCGG----TTCTTTTC-TCCTTGGACTTTGTTCTC-TGG-TCAG-ATAATTTCCTTTAAGC-G-GTCAC-GC-AGC----TT--TGG-AGG-ATATT-C-TT-TTTCG-CG-TTTTGA---ATCTTGT-C-TCT-GC-AGGGTT---TCTCG-G-TGTCTT-TC-AA---TGTG-TCC-TCAATG-CTCTTGA-AATG-TGTGGC-CTTTCA--T---GGTTTT---CTTT---CA-TGCA-TCTG-AT-GC-A-GA---C-GG-AAGC-TTG--CA--TTCCT-GACACGC-CAT--T--TCGTA-A---AG-GAATTCT-G-GATGGA-GTG----G-A----GGTGTTGACAG-A--T-C---GTG---------T-------GTNTG---------TCTCTCTC-CT-G-GTAG-GGGACGAT-GACGTG-GGATCTGGTGGCNTTGCTCTTG-GTGTGAC-GGTCCCGG-CATACCTGA-CACA-GGTTGTCGGT-ACAG-GTG-T-TACAGTA-ATAT-TC---AG--CGTTCGC-CTC-ACACTG-TGTA-CACT-CCAC-ATAGTG-CTGG--GCA--AACTTT-ATGT-TCCCGTCT-G--GACATCTG-T--AGATTGTAA--AACAAAACG--TTAAAAAATCGCAATAGCATGAT-ATATTACAAA-ATATG-G-TTNT--TT--GGGGGGTGTAAT--TTATTTCTTCATATATTCGTTTA--TCT----TAA--ATCGCACATAT-TAAACTGAGAGGNCTGTGCAGATAAAATGT---G---TTTA-TCC---CGAT-TCAACAAAAAT-AAAGAAAA-------GAANAAACAA-------GTTTCCAC--G-----TGCA-AAGT------ATAAAACG---A-AAGTTG------AAAATA-A-ATANTT-TT-AAAAACA------TCAAA-ATTTTA---TCACAANCATATTCATCACTC----ACAAGTTGATGTAACATACCTGGCCTTGAATNCAAAGTGTAAGACACCCAGCTGCAGTCCCAGTTATGTCGTAACATTTGGGTAGAATCTANATGACAAATTNTNGATGACACACCCNGGTAACAGATAGNTCTATGGAACGCCGCCTGGTATGTAACAAACATTATATAAATGTGT
Reference ( family-418 ) : TTTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-ATGATCC-GGC-CTTTC-TCAT------CTC-CAAC--CCAA-A-C---TTTGTC-----TN-CAGAT-G---CA-CAG-GAAATATGGCGTGAA--TTTT-TA----GNGGG--C--GCGTCGAATTCC-AGG--CATTTTACAGG--AGAACC----AATAGA-A-AT-T--ATCTCTTG-ACACGT---T---AAG-T-----TTTT-T-GA-AA--T---T--T----G---T---T-TTGGTT-TTTCAT-----GCGTAGATT---TCTT-CGGCC---ATACTTA----G-TTT----C--CAAA------CA--GC-TTCAT--G--A-CC-GCG-TCCTTGT-TGA-TGG-TTTCTG-GTTG-GTTA-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--TTC-AG-G-CT-CT-GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGCNA-GCTTTCTCGT-A----CGGTCC-TTTTTCTTCA-TCTTC--AAACCCGT-CG---A-TGAAATC-TTCATAGCTG--GATATAAAA-CGAGA-TATAATGGC-TG-T-TTGA-TTTTCGAA-TTCCT-CATCC--TGG-AT--A--TTTGTCGCCGAT-A--T--CA-----------AG--AT-CTC-CGA-GTTTTT---C-CTG--GA-GAATGGC-GT--CTA-CTAAATCCTT-AAT-CTGTTTTGCATCC-TC---CGCA-G-TCGTCT--C---CT-TATC-GTCGG----TTCTTTTC-TCCTTGGACTTTGTTCTC-TGG-TCAG-ATAATTTCCTTTAAGC-G-GTCAC-GC-AGC----TT--TGG-AGG-ATATT-C-TT-TTTCG-CG-TTTTGA---ATCTTGT-C-TCT-GC-AGGGTT---TCTCG-G-TGTCTT-TC-AA---TGTG-TCC-TCAATG-CTCTTGA-AATG-TGTGGC-CTTTCA--T---GGTTTT---CTTT---CA-TGCA-TCTG-AT-GC-A-GA---C-GG-AAGC-TTG--CA--TTCCT-GACACGC-CAT--T--TCGTA-A---AG-GAATTCT-G-GATGGA-GTG----G-A----GGTGTTGACAG-A--T-C---GTG---------T-------GTNTG---------TCTCTCTC-CT-G-GTAG-GGGACGAT-GACGTG-GGATCTGGTGGCNTTGCTCTTG-GTGTGAC-GGTCCCGG-CATACCTGA-CACA-GGTTGTCGGT-ACAG-GTG-T-TACAGTA-ATAT-TC---AG--CGTTCGC-CTC-ACACTG-TGTA-CACT-CCAC-ATAGTG-CTGG--GCA--AACTTT-ATGT-TCCCGTCT-G--GACATCTG-T--AGATTGTAA--AACAAAACG--TTAAAAAATCGCAATAGCATGAT-ATATTACAAA-ATATG-G-TTNT--TT--GGGGGGTGTAAT--TTATTTCTTCATATATTCGTTTA--TCT----TAA--ATCGCACATAT-TAAACTGAGAGGNCTGTGCAGATAAAATGT---G---TTTA-TCC---CGAT-TCAACAAAAAT-AAAGAAAA-------GAANAAACAA-------GTTTCCAC--G-----TGCA-AAGT------ATAAAACG---A-AAGTTG------AAAATA-A-ATANTT-TT-AAAAACA------TCAAA-ATTTTA---TCACAANCATATTCATCACTC----ACAAGTTGATGTAACATACCTGGCCTTGAATNCAAAGTGTAAGACACCCAGCTGCAGTCCCAGTTATGTCGTAACATTTGGGTAGAATCTANATGACAAATTNTNGATGACACACCCNGGTAACAGATAGNTCTATGGAACGCCGCCTGGTATGTAACAAACATTATATAAATGTGT
gi|1 : TTTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----C-G-TCTTG-T-CC-ATGA--GC-ATGATCT-GGC-CATTC-TCAT------CTC-CAAC--CCAA-A-CG--TTTGTT-----TC-CAGAT-A---CA-CAG-GAAATCTGGCGTGAA--TTTT-TA----GTGAG--C--GTTTTGAATTCC-AGG--CATTTTACAGG--AGAACC----AATAAC-A-AT----ATCCTTTG-ACACGT---G---AAG-T-----TTTT-T-GA-AA--T---T--T----G---T---T-TTGGTT-TT--AA-----ACGTAGAAT---TTTT-CGGCC---ATACTTA----G-TTC----C--CAAA------CA--GC-TTCAT--G--A-CC-CCG-TCCTTGT-TGA-TGG-TTTCTG-GTTG-GTTA-CT-G-AGG-ATTTTC-T-ATGCT---G-GTAA--TTC-AG-G-CT-CC-TA-AACTTCAGA-TGGAGGATTTC-ATTT--CGCAGCGCAA-GCTTTCTCGT-A----CGGTCC-TTTTTCTTCG-TCTTC--AAACCCGT-CA---A-TGAAATC-TTCATAGTTG--GATATAAAA-CGAGA--ATAATGAC-TG-T-TTGA-TTTTCGAA--TCCT-CATCT--TGG-A---A--TTTTTCGCCGAT-A--T--TA-----------AG--CT-CTC-CGA-GTTTTT---C-CTC--GA-GAATGGC-GT--CTA-CTAAATCCTT-AAT-CTGTTTGGCATCT-TC---CGCA-G-TCGTCT--C---CT-TATC-GTC-G----TTCTTTTC-TCCTTGGACTTTGTTCTCTTGG-TC-G-ATAATTT-CTTTAAGC-G-G-CAC-GC-AGC----TT--TGG-AGG-ATATT-C-TTGTTTCG-CG-TTTTGA---ATCTTGT-C-TCT-GC-A-GGTT---TCTC--G-TGTCTC-TT-AA---TGTGCTCC-TTAATG-CTCTTGG-AATG-TATGAC-CTTTCG--T----GTTTT---CTTT---CA-TGCA-TCTA-AT-GC-A-GA---T-AG-AAGC-TTG--CA--TTCCT-GACAC-C-CAT--T--CTATA-A---AG-TAATTC--G-GATGGA-GTG----GAA----AGTGTTGACAG-A--T-C---GTG---------T-------GTGT----------TCTCT-TC-CTGG-GTAG-GGGAC-AT-GACGTGCGGA-CTGGTGGCTTTG--CTTG-GTGTGAC--GTCCCGG-CATGCCTGG-CACAGGGTTGT-GGTAACA--GTG-T-TACAG-A-ATAT-TC---AG--CGTTCGC-CTC-ACACTG-TGTATCACT-CCAC-ATAGTG-CTGG--GC---AACTTT-ATGT-CCCCGTCT-G--GACATCTG-T--AGATTGTAA--AACAAAACATTTTAAAAAATCACAATAGCATGAT-ATATTACAAAGATATG-G-TTCT--TTGGGGGGGGTGTAAT--ATATTTCTTCATATATTCA-TTA--TCT----TAA--ATTGCACATAA-TACACTGAGAGGACTGTGCAGATAAAATGT---G---TTTA-TCC---TGAT-TTAGTAAAAAT-ATAGAAAA-------GAACAAACAA-------GTTCTCAC--A-----TACATAAGT------AGCAAACG---AGAAGTTG------AAAATAGA-ATATTTATT-AAAAACA------TCAAA-ATTTTA---TCACAAATATATTCATAACGC----ACAAGTTGATGTAACATACCTGGCCTTGAATCCAAAG-GTAAGACACCCAGCTGCAGTCCCAGTT-TGTCGTAACATTTGGGTAGAATCTAGA--AC-AATTTTTGATGACACACCCCGGTAACAAATAGATCTATGGAACGCTGCTTGGTAT-TAACAAACA-TATATAAATGTGT
gi|10 : GT-ACAG-GTG-TATACAGTA-ATAT--C---AG--CGT-CGC-CTC-ACACTGCTGTA-CATT-CCAC-A-AGTG-CTGG--GCA--AACT-----AT-TCCCGCCT-G--GA--TCTG-T--AGATTGT-A--AACAAAACG---TAAACAATC-----AGCATTAA-ATATTTTAAA-AAAAA-A-TTG----T--AGATAGTACTAG--TTATTATTACA---ATTTGT-------T----TAA--TTCTCCC------AAAC--AGAGGCTAGTGC----AAACTGTTACGGATTTTACTCCGTGCGGTATCAAAAAAAAA-AAAAAAAAATCGTGCAAAGAAACAA--------TCTCTGC--AGCAATTGCA-AA--------ATAAAACGCCAA-AAG-TGAAACACAAAATA-ATATGATT-TT-AAAAG-A------TC-----TTTTAATTTTATAGCCATATT--TCATTC----ACAAGCAAATGTa
gi|11 : TTTTTAATCTTC-GTTTCAGCT-T--TTG-CTTTCTTCTA-GATCTTGAT-CCTATTA--GCCATAATCA-GGC-CTCTT-TTATTCATTTCTC-AAAC--CCAA-A-TCTTTTTGTC-----TA-CAGAT-TATTTA-CAG-GAAATCTGTATTGAAAATCTT-GA----GAGGA--C--ACTTTGAATTCC-AGA--CATTTTACAGG--AGAACC----AATAGATATAT-G--ATCTGTTG-ACACGA---C---ACG-T-----TTTT-TGGA-AA--T---T--T----GTTCT---T-TTGGTT-TTTCAT-----GCGTCGACT---TCTT-TGG-C---ATACTTA----GTTTT----C--CAAA------CATCGC-TTCAT--G--A-CC-CGG-TCCTTGT-TGA-TG---TTCGG-TTTGTGTTA-AC-G-AGG-A-TTTC-T-ATGCTT--G-GTAA--TTC--G-G-CTGCT-GTAAACTTCccctcagaagtttattgcttaagaatggatataactgggtatgtaactagaaaatgtgaaattttcatttaagcagtctgctgtatattgtctagaagtatttccgccgggcctgatgctctgtacattaaattagatgagctacttgacagcgaattctgacaaagataggtgaatagaaataaatatatattagtcgagtaacgtagttataaaaaaaattactgcttatagcttaagagacaaaagtgtacaaaattcgccagttggaattagtcgtga
gi|12 : aatttgTTTTAATCTTC-GTC-CAGGTTT--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-CCGATTT-TGC-TATTC-TCAT------CTC-CAAC--CCAA-A-C---TTTGTT-----TC-CAGAT-A---CA-CAG-GAAATCTGGCGTAAT--TTTT-TA----GTGAG--C--GTTTTAAATTCC-AAG--CATTTTACAGG--AGAACC----AATAAC-A-A--T--ACCCCTTG-ACACGT---G---AAGTT-----TTTT-T-GA-AA--T---T--T----G---T---T-TTGGTT-TTTCAA-----ACGTAGATT---TTTT-CGG-C---ATACTTAC---T-TTT----C--CAAA------CA--GC-TTCAT--G--G-CT-GCG-TCCTTTT-TTA-TGA-TTTCTG-GGTG-G-TA-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--
gi|13 : tctgATCT-C-GTC-CAGC--T--TTC-TTTCC----A-G-TTTTG-T-CC-ATGA--GC-ATGATCC-A---CCTTC-CAAT------TTC-CTA---CCAA-A-C---TTTGTT-----TT-AAGAG-G---CA-CAG-GAAATAT----TGA----TTC-TATTCTGTAGA--CCAACATCG-ATTCCAAAG--CATTTT-TAAG--AGAACCG---AACAGA-A-A--T--ATCTCTTG-G-ACGG---C---AAG-C-----GTCTAT-AA-CA--C---T--TAAGCG---T---TCTTTGTTATTTCAT-----
gi|14 : tgttgtatTTGTAATCT-C-GTC-CAG---T--TTTCTTTCC----A-G-TTTTG-TTCC-ATGA--GC-ATGATCC-AGCACTTCC-TCAT------TTC-CTAC--CC-A-A-C---TTTGTT-----TA-CAGAG-G---CA-CAG-GAAATATGTTCT-AA--TTCTGTA-----TCCA--C--ACATCGAATT-C-AAA--CATTTTA-AGA--GGAACC-----ACAGA-A-A--T--ATCTCTTG-AGACGT---T---AAT-T-----TTTC-C-AATAA--T---T--TTGGGG---G---T-TTGGTT-TTaatgt
gi|15 : ctgTTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-ATGATCT-GGC-CATTA-TCAT------CTC-CAAC--CCAA-A-C---TTTGTT-----TC-CAGAT-A---CA-CAG-GAAATCTGGCGTGAT--TCTT-TA----GTGAG--C--GTTTTGAATTCC-AGA--CATTTTACAGG--AG
gi|17 : ctgGTC---ATACCTGTTGTG-CTC----C--CAAAAACATACA--G---TCACTGG--A-TC-GCG-TCCTTGTCTGA-TGG-ATTCTG-GTTG-GT-A-CTCG-AGG---TTTC-T-ATGCTT--G-GTAA--TTC-AG-G-CT-CTGGT-AA
gi|2 : atacttaggtTTGTTAATCT-CCGTC-CAG---TATTTG-TTTCC----ATG-ACT-G-T-CA-A-GATAGC-A-GATTCTGGC-CTTTCACCAT------TTCTCAACAGCCAATATC---TTTGTCGTGTGTATCAGATTGT--CATCAGTGAAATATT-CG-GAA-------------GAAGATTC--ACGTCGA-TTCC-GAGATCATTTTACCGGTTCTAACCTTTAAGTATG-A-GT-TTCATCTCCCGGACACGT---T---TCG-TATTTTTTTT-T-GG-AA--TATTT--T----G---T---T-CCGGTT-TTTCATATGGGGCGTAGATTATTTCTTTCGGCAGGAATTCTTA----G-TTT----TTTCAAG------CA--GC-TTCAT--GTTA-CCCGCGGTCCTTGT-TGAGTGG-TTC--G-GTTG-GTGATCT-GTAGGTATTTTCAT-ATGCTT--GTGTAAATTTCTAGTGTCT-CG-TT-AACTTCAGACTGGATGATTTCTATTTTTCGCAG-GCAACGCTTTCTTGT-AATGGTGGT---TTTTTCTTCAATCTTTCAAAACCCCT-CG---AATAAAATC-TTCATAGCTG--GAAATAAAG-CGAGA-TATGATGCC-TGTT-TTGA-TTTCGAAA-TTCTTACA-CCGATGGCAT-----TTTGTCG-CGAT-T--T--TATAATTGTTTCTAGTTATCCTT-CGATGTTTTC---G-CTG--GA-GAGTGGT-TTTGCTAGCTAAATCCTTAAAT-TTGTTTTGCATCC-TC---TGTATA-TTGTTT--CGCTTT-TACT-GTCTGTGTTTTTTTTTCTTCCTTGATCTTTGTTCTC-TGG-TCAG-ATCATT--CTTTAAGG-GCGTCACTGCTAGC----TTTGTGG-AGA-AAGTTGCATT-TTTCG-CG--TTTGAAATATTTTGT-CTTCT-GC-AGGGTTTTCTTTCGTGTTGTCTTGTC--A---TGTGTTCC-TC-ATG-TTTTTTCTAATG-TGTGGT-ACTTTATTT---GGTTTTTTCTTTT---CA-TGCA-TCTG-AT-GC-A-GAC--C-GG-AAGCTTTG--CA--TTCCT-GACACG
gi|20 : ttctgatttattctagttgtcggtcttcctttcggattgttgtactttatactgttgcttgagcgtcgattgtacagtaaatcaccatcggtaatgtcatccgttgtcttaagataaccgatacattgaaagggacgcatagatggTACAAA-ATGTG-G-TTTC--TTTAGGGGGGTGTAAT--TTATTTCaaggcgtcatgttcagtattttagagattatttttctggagtgatgtggatcaggttttttcggtttgtttttggtatgtgtttatcgtgtgttctctgttcgtcct
gi|3 : TTTTAATCT-C-GTC-TAG---T--TTG-TTTCC----A-G-CCTTG-T-CC-ATGA--GC-ATGATCT-GGC-CTTCC-TCAT------CTC-CAAC--CCAG-A-C---TTTGTC-----TG-TAGAT-A---CA-CAG-GAAATATGACGTGAA--TGTT-TT----GAGGG--C--ACATTAAATTCA-AGG--CACTTTACTGG--AGAACC----------------------TTTTG-CCATGT---T---CAG-T-----TTTT-T-AA-AAATT---TGCT----G---T---T-TTGGTT-TTTCAT-----GCGTAGATT---TCTT-CGG-C---ATATTTA----GTTTT----C--CAAA------CA--GC-TTCAT--G--A-CC-GCG-TCCTTGT-TGA-TGA-TTTCTG-GTTG-G-TA-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--TTC-AG-C-CT-CT-GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGATA-GC-TTCTCAT-A----CGGCCC-TTTTTCTTTA-TCTTC--AAACCCGTGCGGTCA-TGAAATCGTTCATAGCTGCCGATATAAAA-TGAGA-TATAGTGGC-TG-T-TTGATTTTTCGAA-TT-CT-CATCT--TGG-----A--TTTGTCGCTGAT-ATTT--CA-----------AG--ATGCTC-CGGTGTTTTTCTGC-CTGC-GAGGAATGGCGGT--CCA-CTAAATCCTT-AAT-CTGTTTTGCATCTGTCT--CGCACG-TCGTTTTCC---TT-TAT--GTCGG----TTCTTTTC-TCCTTGGACTTTGTTCTC-TGGTTCAG-ATAATTTCTTTTAAGC-G-GTCAT-GC-AGC----TTGATGG-AGGTATATTGC-TT-TTTCA-CGTTTTTGA---ATCTTGT-C-TCTCGC--GGGTTG--GCTCT-G-TGTCTT-TC-AATATTGTG-TCCTTCCATGTTTCTTGA-AGTGTTGTGGCGCTTTTA--TGTGGGTCTT---CTTCTTGCA-TACATTCTGTAT-GCTA-GATTCT-GGCAAGC-TTGCACA--TTCCC-GAC-CACACATGGT--CCGTA-AAAGAG-GAATTCT-G-GTAGGA-CTG----------------TGACAG-AG-T-CTCGGTGCTTTGGAGAT-------GTTGG---------TC-CTCTCTCT-G-GTAG-GGGACGATAGACGGT-GTATCT-GTG--CTTGCTCTT--GT-TGACGGGTCCCGGACATACCTGACCACA-GGTTGTCGGT-ACAGTGTGTT-TACAGTA-ATAT-TC---AG--C-TTCGC-CTC-ACATCG-TGTA-CACT-CCAC-ATA-TG-CTGA--GCA--AACTTT-ATGG-GCCCGTCTCGGTGACATCTG-TTAAGATTGCAA--GA
gi|4 : tttgGTAGATT---TCTT-TGGC----ATA-TTA----G-TTTTTATC--CAAA------CA--ACATTCAT--G--A-CC--CG-TC-TTGT-TGA-TGG-ATTCTGCGTTT-GTTA--T-G-AGG-ATTTTC-TTATGTTTTTG-GTAAA-TTC-AG-G-CT-CT-GT-AACTTCAGACTGGAGGATTT--ATTT--CGCAGCGCTA-GCTTCTTCGTTA----CG-TCC-TCTT-CTTCA-TCTTC--AACACGGC-CG---T-TGAAATC-TTCATAGTTC--GATAAAAAAACGAGA--ACAATGGCCTG-T-TT-A-TTTTCGAA-TTCCT-TATC-----G-AC--AGATTTGTCGCTGATTA--T--CA-----------AG--AT--TC-CGA-GTTTTT---T-CTGAGGA-GAATGGT-GT--CTA-CTAAGTCCTT-AATACTGTTTGGCATCT-TCATCCACA-G-TCGTCT--C---CTATAT--GTCGT----TTCTTTTC-TCCTCGGACTTTGT-CTC-TGG-TCAGCATAATTTCTTTTAAGTTG-GTCAC-GC-AGC----CT--TTG-CAG-A-ATT-A-TT-TTT-G-CA-TTTTGA----TCTTGT-C-TCT-GCCAGGGTT---TCTTG-G-TGTTTT-TCCAA---TGCG-TCC-TTAAT--CTCTTGA-AACG-TATGAC-CTT-CA--T---GGTTTTT--CCTT---CA-TACA-TCTG-ATTGC-ATAA---C-GG-AAGC-T-G--CA--TTCCTTGACACGC-CAT--TGTTCGTA-A---AGAGAATTCTTG-GATGGA-----------------TGT-GACAG-GATT-C---GGG---------T-------GTCTGGAGATATTGCCTCTATT-CT-T-GTATTGGGACGAT-ATCGTG-GGATCTG-TGGCGTTGCTCTTG-GTGTGAC-GGTCCCGG-CATACCTGA-CACA-GGTTGTCTGT-ACAG-GTG-T-TACAGTA-ATAT-TTTCAAG--CGTTCGC-CTC-ACA-TG-TGTA-CATTTCCAC-ATAGTGGCTGG--GCA--AACTTTGATGTGTCCCGTCT-GC-GACATCTGCT--AGATTGTAA--CA-AAAACG--T-AAATAATTGTA-------GAT----TTAC-------TG-G-TTATCATT--GG----TACAATAATGAATTTGTCA-AT-TTTGTTTA--TTT----TG----TCG-----AT-TAAAC--AAAGGACTGTGCAAA-ACAA-----------------C---AAA---CAACAACAAT-GAAGACAA-------G---AAACAA-------GTTTACACTTG-----TGCA-AATT-------TAAAACG---A-AAGTTG------AAAAT--A-ACACCT-----AAAAC--------CAAACACTTTA---
gi|5 : TTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-ACTTG-T-CA-ATGA--GC-ATGATCT-GGC-CTTCA-CCAT------CTC-CAAC--CCAA-A-C---TTTGTC-----TA-CAGAT-G---CA-CAG-GAAATACGAAGTAAA--------------------C--ACGTCGA-TTCCGAGA--CATTTTACCGG--CAACCT----AGTATA-A-GT-TTCATCTTCCG-ACACGT---TTCTA---T-----TTTT-T-GA-AA--T---T--T----G---T---T-CCGGTT-TTTCAT-----ACGTAGATT---TCTT-CGGC----ATACTTA----G-TTTT---C--CAAA------CA--GC-TTCAT--G--A-CC-GCG-TCCTTGT-TGA-TGG-TTTCTG-GTTG-GT-A-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--TTC-AG-G-CT-CT-GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGCAA-GCTT-CTTGT-A----TGGTGG-TTTTTCTTCA-TCTTC--AAACCCCT-CG---A-TAAAATC-TTCATAGCTG--GAAATAAAG-CGAGA-TATGATGGC-TG-T-TTGA-TTTTCGAA-TTCTT-CATCC--AGG--C--A--TTTGTCGCTGAT-A--TATCT-----------AG--AT-CCT-CGA-GTTTTT---C-CTG--GA-GAGTGGT-GT--CTA-CTAAATCCTT-AAT-CTGTTTTGCATCC-TCT--CGTA-A-TTGTTT--C---CT-TA-C-GTCGG----TTTTTTTC-TCCTTGGACTTTGTTCTC-TGG-TCAG-ATCATTTC-TTTAGGC-G-GTCAC-GC-AGC----TT--TGGGAGA-ATATT-C-AT-TTTCG-CG-TTT-GA---ATATTGT-C-TCT-GC-AGGGTT---TCTCG-G-TGTCTT-TC-AA---TGTG-TCC-TCAATG-TTTCT-A-AATG-TGTGGC-CTTT-A--T---GGTTTT---CTTT---CA-TGCA-TCTG-AT-GC-A-GA---CCGG-AAGC-TTG--CA--TTCCT-GACACGC-CAT--G--TCATA-A---GA-GAATTCT-G-GATGGATGTGACA-G-GTTTCGGTGTTTGGAG-G--TAC---GTG---------T-------GT-TC---------TCTCTCTC-CT-A-GTAA-GGGACGAT-GACGTG-GGATCTGGAGGCATTACTCTTG-CTATGAC-GATCCCGG-CATGCCTGA-CACA-GGTTGTCGGT-TCAG-GTG-T-TACAGTA-ATAT-TC---AG--CGTTCGC-CTT-ACACTG-TGTA-CACT-CCAC-ATAGTG-CTGG--GCA--AACTTT-Agatataagtctcatac
gi|6 : TTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-ATGATCC-GGC-CTTTC-TCGT------CTC-CAAC--CCAA-A-C---TTTGTC-----TA-CAGAT-C---CA-CAG-GAAATATGACGTAAA--GTAT-CA----AGGGG--T--ATATCGAATTCC-CGA--CATTTTACAAC--AGAATC----GATGGA-A-ATATG-ATCTTTTG-GCACGTTTCT---A---C-----TTTT-T-GA-AA--T---T--T----G---TTGGT-TTAGTT-TTCCAT-----ACGTAGATG---TTTT-CGG-C---ATACTTA----G-TTTA---C--CAAA------CA--GC-TTCAT--G--ACCC-GCG-TCCTTGT-TGA-TGGTTTTCTG-GTTG-G-TA-CT-G-AGG-ATTTTC-T-ATGCTT--G---AA--TTC--G-G-CT-CT-AT-AACTTCAGACTGGAGGA-TTC-ATTT--CGCAGCGCTA-GC-TTCTCGC-A----AGGTCC--TTTTCTTCA-TCTTC--AAATCTGT-CG---A-TGAAATC-TTCATAGTTG--GATATAAAA-CGCGA--ATAATGG--TG-T-TTGA-TTTTCGAA-TTCCT-CATC-----G-ATAGA--TTTGTCG-CGAT-A--T--CA-----------AG--AT-C-C-CGA-GGTTTT---C-C-G--GA-AA---GT-GT--CTA-CTAAATCCTT-AAT-CTG-TTTGCGTCT-TC---TCCA-G-TCGTCT--C---CT-TAT--GTCGG----TTCTACTC-TCTTatttataaaatattgaaaagtatcgtgtatatgtccgtaagtggtcga
gi|6 : ctgT---CTTT---CA-TACA-GCTG-AT-GC-A-AA---CCGG-AAGC-TTG--CA--TTCCT-GAgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtctttcatacagctgatgcaaaccggaagcttgcattcctga
gi|7 : ctgttttaatctcgtccagtttgtttccagtcttgtccatgagcatgatccggcctttctcgtctccaacccaaactttgtctacagatccacaggaaatatgacgtaaagtatcaaggggtatatcgaattcccgacattttacaacagaatcgatggaaatatgatcttttggcacgtttctactttttgaaatttgttggtttagttttccatacgtagatgttttcggcatacttagtttaccaaacagcttcatgacccgcgtccttgttgatggttttctggttggtactgaggattttctatgcttgaattcggctctataacttcagactggaggattcatttcgcagcgctagcttctcgcaaggtccttttcttcatcttcaaatctgtcgatgaaatcttcatagttggatataaaacgcgaataatggtgtttgattttcgaattcctcatcgatagatttgtcgcgatatcaagatcccgaggttttccggaaagtgtctactaaatccttaatctgtttgcgtcttctccagtcgtctccttatgtcggttctactctcttgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnng-C-TT-TTTCG-CG-GTTTGA---ATCTTGT-C-TCT-GC-ATGGAT---TCTCG-G-TGTCTT-TC-AA---TGTG-TCC-TTAATG-CTCTTGA-A-TG-TATGAC-CTT-CA--T---GGTTTT---CTTT---CA-TGCA-TCTA-AT-GC-A-AA---TAGG-AAGA-TTG--CA--TTCCT-GACACGC-CAT--T--TCGTATG---AG-GAATTCT-G-GATGGA-GTGACAGG-ATTC-GGTGTTTGGAG-A--T-----GTG-----------------GTCT-----------CTCTCTC-CT-G-GTAG-GGGACGAT-GACGTG-GGATCTGGTGGCTTTGCTCTTGTGTGTGAC-GGTCCCGG-CATACCTGA-CACA-GGTTGTCGGT-ACAG-GTG-T-TACAGTA-A-ATATC---AG--CGTTCGC-CTC-ACACTG-TGTA-CACT-CCAC-ATAGTG-CTGG--GCG--GACTTT-ATG--TCCCGTCT-G--GACATCTG-T--AGATTGTAAACAAAAAAATT--TTAAAAA--CACAATAGCATGATAATATTACAAA-ATATG-GTTTCT--TT--AGGGGGTGTGAT--TTATTTCTTCATATAATCATTTA--TCT----TAA--AATGCACATAT-TAAACTGAGAGGTTTGTGCAGATAAAATGT---G---TTTA-TCC---TGAT-TCA--AAAAAT-ATAGAAAA-------GAACAAACAA-------ATTCCCAC--A-----TGCA-AAGT------ACAAAACG---A-AAGTTG------AAAATA-A-ATATTT-TTCAAAAACA------TCAAA-ATTTTA---TCACAATC-TA-TCAT-ACTC----ACAAGTT-ATGTAACATACCTG--CTTGAATACAAAGTGTAA-ACACTCAGCTGCAGT-CCAGTTATGTCGTAA-ATTTGGGTAG-ATCTATATGACAAATTATGGATGA-----CCGGGTAACAGATAGCTCTATGGAACGCCGCC---TATGTAAC-AACATTATATAAATGTGT
gi|8 : ---CA-TACA-TCTG-AT-GC-A-GAT--C-GG-AAGC-TTG--CA--CTCCT-GACA
gi|8 : T-ACAA-GTG-T-TACAGTA-ATAT-TC---AG--CGTTCGC-TTC-ACACTG-TGTA-CACT-CCAC-ATAGTG-CTCG--CCA--AACTTT-ATA--TCCCGTCT-G--GACATCTG-T--AGATTGT-A--AACAAAAC-----AAAAAA-CGTAA----ATAAT--CA--ACAAA-ATATGCA-TTGT-------AGATATATAGT--ATATTAC------TATTTGTTTGATTCTGCGATAAACATCGAAC-TGTGTAAGATGAGAAGG------GGA-AAAA---------------------CGA---AAACAAAAACAAAAAAAAA-------GAAGAAAAAAGGAAGTGGTTTCCAT--T-----AGCA-AAGTAAAGAAATAAAACG---A-AAGTTG------CAAAAA-A-ATAATT-TT-AAAATTATGGAATTCAAA---TTCA---TCACAAGCA-ATT-ATCACTCAGTAACAA-TTGCTGTAAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaagtgttacagtaatattcagcgttcgcttcacactgtgtacactccacatagtgctcgccaaactttatatcccgtctggacatctgtagattgtaaacaaaacaaaaaacgtaaataatcaacaaaatatgcattgtagatatatagtatattactatttgtttgattctgcgataaacatcgaactgtgtaagatgagaaggggaaaaacgaaaacaaaaacaaaaaaaaagaagaaaaaaggaagtggtttccattagcaaagtaaagaaataaaacgaaagttgcaaaaaaataattttaaaattatggaattcaaattcatcacaagcaattatcactcagtaacaattgctgtaaaaaaggaaataactataattgacccacgtgaaatttcataaaacaagtatcagtataggcttccgtgtaagtacattcactataccgctatatatagaataaattcccctgccatagctgcacttgacggaaattctgaattgaaatgaaaatatttgccagtatgtagttataaaaaaaaccatacggttacctgcttaactatagattgtcaaattgcagtcggaattcgtcgtcaa
gi|9 : catacatctgatgcagatcggaagcttgcactcctgacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGACTG-AGGATTTT--TTT--GGCAG-GCTA----CTCT-GC-A----TGGTCCACTTTTCTTTA-TCAT---AAACC-GT-CA---A-TGAA-TC-TTCATA-TTA--GATATAGA---GAGAATATA-TGGC-TG-TCTTGA-TTTTCGAAATTCTT-CATCC--TGG-AT--A--TT-GT-GCTGAT-A--T--CA-----------AGT-AT-CTTACGA-GTTTTT---TTCTG--GA---ATGGCCGTA-CTA-CTAA-TCC---AAT-CTGTTTTGCATCC-TCG--CGCA-GATCGTCT--C---CT-TATCTGTCGG----TTCTCTTC-TCCTTTGACTT-GTTCTC-TA--TCGG-ATAATTTTCTTTAAG-------GC-GC-AGCAAGATT--TGG-AAG-ATATT-C-TT-TTTCGGCG-TTTTGA----TCTTGTTC-TCT-GC-AGGGTT---TCT-G-A-TGTCTT-CA-AA---TGT--TCG-TCAATG-TTTCTGA-A-TG-TGTGGC-CTTT-A--T---GGTTT----CTTT---CAATAAA-TCT---T-AC-A-GA---C-GG-AAGT-TTG--CAAGTTC---AGCAC-C-CAT--G--TCGTA-A---GA-GAATTAT-GTGATGGA-------------------TTGACAGGA--T-C---GCG---------TTTTGGAGATGTG---------TCTCTCCT-CT-GTGTAG-GG-ACGAT-GACGTG-GGATCTGGTGGCTTTGCCATTT-GGGTGAC-GGT-CCGG-CATA-CTGA-CACA-AGTTGTCGGT-ACAG-GAT-T-TACAGTATATAT-TC---AAGTCGTTCGCGCTCTACACTG-GTTA-CACT-CCACAATAGTG-CTGGCTGCAATAACTTT-ATG----CCGTCT-A--GACATCTG-T--AAATGGT-C--GACAAAAaaaaggaaataactataattgacccacgtgaaatttcataaaacaagtatcagtataggcttccgtgtaagtacattcactataccgctatatatagaataaattcccctgccatagctgcacttgacggaaattctgaattgaaatgaaaatatttgccagtatgtagttataaaaaaaaccatacggttacctgcttaactatagattgtcaaattgcagtcggaattcgtcgtcaa
blockSeqs : T C T GTT AT C TTCT T A A T T TA C CT A A TCATTT T AG T T CTT GTGTG AT TATT T T T TTCTATTCTGTAGACCAACA A AT TT TTTAAGTATGAGTTTC G TTCGTATTTT A G T AT ATT GC AAGC TTCT C A ATGGG ATT T CAGGA TTGTG TTAT TT AACATA TC A TG TT C CG G C G T C T TT T C T T A T TT T AT TA T T G G A T TT C A C T T T ATGGT AC A CA C G GTCA G CC AA AT C T C T A A CGATGGCAT C ATT AT TAATTGTTTCT TT C A T CTGC AG G G G TG G A A G ATC TA TC GCT A TCT TGTT T . T A C CT GGC T T T AAGA TG G T A G A . G TT AATA T T C C TTC GT T G C TAT T T C T T A T G TTATGTG TTC TTG A T T T T T TTCT C T CA AG T G A GGT AAAG A T T TGTGACAGGTTTCGGTGTTTGGAGGTACGTGTGTTC C T GT T A . C GT G G A C . . T T A T A TCA GT G T C . T A G CT AT G TG C GT C TA AAAC C TTT C AT ACAATA AA . GT TCTTTA ATA AA TA TA TT AT GCGATAAACATCGAACTGTG T CTA A T TGTTACGGATTTTACTCCGTGCGGTAT AA A A ATCGTGC G GGAAGTGG AGCAAT . GTAAAGAAA CCA . AAACAC A T A TTC TATGGAAT CA ATT C AT T C C AGTA G A . A T . . A . . T TG A A G . G C . G . T
blockSeqs : T . . CT . . . . . . . . . . A . . . . . . . . . A TGT . . G AAATCTTGAGAGGACACT G . . AATAGATATATG . GAAGTT . . . . . . TGGG TTGG . . . . . TC GT T . . . . . . . C . . . . . . TG . . . . . . . . A A . . . . . . . C T . T C . C T . . C . AA . . G T . . . . . . CTGGATA C TA . . T G . T TT C . A C A . . . . T CG . . . CT . . . . A . CT TTG T . . . GA . . T G . . . T A . . . . G T . . . . . . A . . G . . TTATTT T . . . . . . . CC . . . . . A . TGT TG . . . CTGTGACAGAGTCTCGGTGCTTTGGAGATGTTGG A . G . . . G G A . . . . . . . . . . . . . . . . . . . . . . T . C . . AA A GT T AT GTAA A . CA ATCATT GGG . GT A TT . TAAAATGCACATAT T ACT A . TGTGTTTATCCTGATT AC . A . C G TTG . GTA . . . A . C TT CA A . T T T . C . G G
blockSeqs : . . . C . . . . . . . . . . T . . . . . . . . . C A . . T TTTTTTAGTGAGCGTT . . . AGTATAAGTTTC . TTCTAT . . . . . . . T . . . . . C CT A . . . . . . . G . . . . . . TT . . . . . . . . . A . . . . . . . C T . T C . C T . . G . T . . A T . . . . . . GACAGA C T . . . . . . G . . A . . . . . . T GA . . . T . . . . A . TC CG T . . . . . . T . . . . T A . . . . . G . . . . . . A . . A . . CAT . . . . . . . . CC . . . . . G . G A . . . GTGACAGGATTCGGTGTTTGGAGATGTGGTCT C . T . . . A G G . . . . . . . . . . . . . . . . . . . . . . G . . . . AA C GT A A GTA . . A CTTT GGG . TT . TT . TAATTCTCCC . TTT G . CAAA AC . T . G A A . TT . . . A . T TT A . . G A . . . . . .
blockSeqs : . . . . . . . . . . . . . . C . . . . . . . . . T G . . G ATTCTGTATCCACACA . . . GATGGAAATATG . TTCTAC . . . . . . . T . . . . . C GT . . . . . . . . G . . . . . . T . . . . . . . . . A . . . . . . . C A . . T . T T . . C . A . . G T . . . . . . CAGGCA C A . . . . . . T . . G . . . . . . G G . . . T . . . . A . C CG T . . . . . . T . . . . G A . . . . . G . . . . . . A . . A . . TAT . . . . . . . . CC . . . . . G . T A . . . TGTGACAGGATTCGGGTGTCTGGAGATATTG C . A . . . T T G . . . . . . . . . . . . . . . . . . . . . . . . . . . A C . A . A . . G GT GAT . . . T . TGTCGAT . G . . CGA . . A . . . T . A . . . . . A . C . .
blockSeqs : . . . . . . . . . . . . . . C . . . . . . . . . A G . . A TTCTTTAGTGAGCGTT . . . GAACAGAAAT . CACGT . . . . . . . G . . . . . C G . . . . . . . . G . . . . . . T . . . . . . . . . A . . . . . . . . T . . C . A T . . T . A . . A . . . . . . . GATAGA . A . . . . . . C . . A . . . . . . . A . . . C . . . . G . C . . . . . . . . . . . . . T . . . . . . G . . . . . . A . . . . . CAT . . . . . . . . TA . . . . . G . G A . . . TTGACAGGATCGCGTTTTGGAGATGTG C . G . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . G GT . .
blockSeqs : . . . . . . . . . . . . . . T . . . . . . . . . C A . . A ATGTTTTGAGGGCACA . . . AATAACAAT . CAAGC . . . . . . . T . . . . . C G . . . . . . . . G . . . . . . T . . . . . . . . . . . . . . . . . . T . . . . T . . . . . A . . . . . . . . . . TTGGA . A . . . . . . C . . . . . . . . . . G . . . T . . . . . . . . . . . . . G . . . . . . . . . . . . TAT . . . . . . . . TC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C
blockSeqs : . . . . . . . . . . . . . . T . . . . . . . . . G A . . A AGTATCAAGGGGTATA . . . ACAGAAAT . TAATT . . . . . . . T . . . . . C G . . . . . . . . G . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . T . . . . . . . . . A G . . . AGAAGATTCACG . . . . . TCAGT . . . . . . . T . . C G . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . C . . . . .
blockSeqs : . . . . . . . . . . . . . . C . . . . . . . . . A C . . . ACACG . . .
blockSeqCons : *** AATAGAAATT********* C**** T* T* *** T** CT CG** G* CAT****** CC*** G** T* AA** T**** GTA*** A* ** TT TAATCGT************** CGCGA********************** TA******* A* TT** CA****** **
originalCons : TTTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-ATGATCC-GGC-CTTTC-TCAT------CTC-CAAC--CCAA-A-C---TTTGTC-----TN-CAGAT-G---CA-CAG-GAAATATGGCGTGAA--TTTT-TA----GNGGG--C--GCGTCGAATTCC-AGG--CATTTTACAGG--AGAACC----AATAGA-A-AT-T--ATCTCTTG-ACACGT---T---AAG-T-----TTTT-T-GA-AA--T---T--T----G---T---T-TTGGTT-TTTCAT-----GCGTAGATT---TCTT-CGGCC---ATACTTA----G-TTT----C--CAAA------CA--GC-TTCAT--G--A-CC-GCG-TCCTTGT-TGA-TGG-TTTCTG-GTTG-GTTA-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--TTC-AG-G-CT-CT-GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGCNA-GCTTTCTCGT-A----CGGTCC-TTTTTCTTCA-TCTTC--AAACCCGT-CG---A-TGAAATC-TTCATAGCTG--GATATAAAA-CGAGA-TATAATGGC-TG-T-TTGA-TTTTCGAA-TTCCT-CATCC--TGG-AT--A--TTTGTCGCCGAT-A--T--CA-----------AG--AT-CTC-CGA-GTTTTT---C-CTG--GA-GAATGGC-GT--CTA-CTAAATCCTT-AAT-CTGTTTTGCATCC-TC---CGCA-G-TCGTCT--C---CT-TATC-GTCGG----TTCTTTTC-TCCTTGGACTTTGTTCTC-TGG-TCAG-ATAATTTCCTTTAAGC-G-GTCAC-GC-AGC----TT--TGG-AGG-ATATT-C-TT-TTTCG-CG-TTTTGA---ATCTTGT-C-TCT-GC-AGGGTT---TCTCG-G-TGTCTT-TC-AA---TGTG-TCC-TCAATG-CTCTTGA-AATG-TGTGGC-CTTTCA--T---GGTTTT---CTTT---CA-TGCA-TCTG-AT-GC-A-GA---C-GG-AAGC-TTG--CA--TTCCT-GACACGC-CAT--T--TCGTA-A---AG-GAATTCT-G-GATGGA-GTG----G-A----GGTGTTGACAG-A--T-C---GTG---------T-------GTNTG---------TCTCTCTC-CT-G-GTAG-GGGACGAT-GACGTG-GGATCTGGTGGCNTTGCTCTTG-GTGTGAC-GGTCCCGG-CATACCTGA-CACA-GGTTGTCGGT-ACAG-GTG-T-TACAGTA-ATAT-TC---AG--CGTTCGC-CTC-ACACTG-TGTA-CACT-CCAC-ATAGTG-CTGG--GCA--AACTTT-ATGT-TCCCGTCT-G--GACATCTG-T--AGATTGTAA--AACAAAACG--TTAAAAAATCGCAATAGCATGAT-ATATTACAAA-ATATG-G-TTNT--TT--GGGGGGTGTAAT--TTATTTCTTCATATATTCGTTTA--TCT----TAA--ATCGCACATAT-TAAACTGAGAGGNCTGTGCAGATAAAATGT---G---TTTA-TCC---CGAT-TCAACAAAAAT-AAAGAAAA-------GAANAAACAA-------GTTTCCAC--G-----TGCA-AAGT------ATAAAACG---A-AAGTTG------AAAATA-A-ATANTT-TT-AAAAACA------TCAAA-ATTTTA---TCACAANCATATTCATCACTC----ACAAGTTGATGTAACATACCTGGCCTTGAATNCAAAGTGTAAGACACCCAGCTGCAGTCCCAGTTATGTCGTAACATTTGGGTAGAATCTANATGACAAATTNTNGATGACACACCCNGGTAACAGATAGNTCTATGGAACGCCGCCTGGTATGTAACAAACATTATATAAATGTGT
finalCons : TTTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-ATGATCC-GGC-CTTTC-TCAT------CTC-CAAC--CCAA-A-C---TTTGTC-----TN-CAGAT-G---CA-CAG-GAAATATGGCGTGAA--TTTT-TA----GNGGG--C--GCGTCGAATTCC-AGG--CATTTTACAGG--AGAACCAATAGAAATT---------ATCTCTTG-ACACGT---T---AAG-T-----TTTT-T-GA-AA--T---T--T----G---T---T-TTGGTT-TTTCAT-----GCGTAGATT---TCTT-CGGC----ATACTTA----G-TTT----C--CAAA------CA--GC-TTCAT--G--A-CC-GCG-TCCTTGT-TGA-TGG-TTTCTG-GTTG-GT-A-CT-G-AGG-ATTTTC-T-ATGCTT--G-GTAA--TTC-AG-G-CT-CT-GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGCNA-GCTTTCTCGT-A----CGGTCC-TTTTTCTTCA-TCTTC--AAACCCGT-CG---A-TGAAATC-TTCATAGCTG--GATATAAAA-CGAGAT-ATAATGGC-TG-T-TTGA-TTTTCGAA-TTCCT-CATCC--TGG-AT--A--TTTGTCGCCGAT-A--T--CA-----------AG--AT-CTC-CGA-GTTTTT---C-CTG--GA-GAATGGC-GT--CTA-CTAAATCCTT-AAT-CTGTTTTGCATCC-TC---CGCA-G-TCGTCT--C---CT-TAT--GTCGG----TTCTTTTC-TCCTTGGACTTTGTTCTC-TGG-TCAG-ATAATTTCTTTTAAGCG--GTCAC-GC-AGC----TT--TGG-AGG-ATATT-C-TT-TTTCG-CG-TTTTGA---ATCTTGT-C-TCT-GC-AGGGTT---TCTCG-G-TGTCTT-TC-AA---TGTG-TCC-TCAATG-CTCTTGA-AATG-TGTGGC-CTTCAT------GGTTTT---CTTT---CA-TGCA-TCTG-AT-GC-A-GACC---GG-AAGC-TTG--CA--TTCCT-GACACGC-CAT--T--TCGTA-A---AG-GAATTCT-G-GATGGA-GTG----G-A----GGTGTTGACAG-A--T-C---GTG---------T-------GTNTG---------TCTCTCTC-CTG--GTAG-GGGACGAT-GACGTG-GGATCTGGTGGCNTTGCTCTTG-GTGTGAC-GGTCCCGG-CATACCTGA-CACA-GGTTGTCGGT-ACAG-GTG-T-TACAGTA-ATAT-TC---AG--CGTTCGC-CTC-ACACTG-TGTA-CACT-CCAC-ATAGTG-CTGG--GCA--AACTTT-ATGT-TCCCGTCT-G--GACATCTG-T--AGATTGTAA--AACAAAACT----AAAAAATCGTA---GCATGATA-TATTACAAA-ATATG-G-TTNT--TT--GGGGGGTGTAAT--TTATTTCTTCA--TATTCGTTTA--TCTTAATCGT--------------TAAACTGAGAGGNCTGTGCAGATAAAACGCGA----------------------CAACAAAAAT-AAAGAAAA-------GAANAAACAA-------GTTTCCAC--G-----TGCA-AATA-------TAAAACG---A-AAGTTG------AAAATA-A-ATANTTTT--AAAAACA------TCAAA--TTTTA---TCACAANCATATTCATCACTC----ACAAGTTGATGTAACATACCTGGCCTTGAATNCAAAGTGTAAGACACCCAGCTGCAGTCCCAGTTATGTCGTAACATTTGGGTAGAATCTANATGACAAATTNTNGATGACACACCCNGGTAACAGATAGNTCTATGGAACGCCGCCTGGTATGTAACAAACATTATATAAATGTGT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTTCTGATTAGCAGGTTGTGGGTCTTCAGTCACTGCGTGGTGTGATTTCGTTGTATGCTGTCATTTGATTCGTCCGATGTACAGATAAATCACCAACCCGAGTACAGACGTGAAGAAGCCGAACATAAAGA
Unaligned ( gi|18 ): GTTCTGATTACAGTTGTGGTCTTCCTTTCTGATGTGTATTTCTTTATACTGTTGTTTGAGCTGTCGATGTACAGTAAATCACCATCGTAAGTCACCGCAAGA
Unaligned ( gi|19 ): CATCGCAAGTCACTGCTTTTTGTGATAACCGTTAAATGAGC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111
lowQualScore : 111 111111 111 11111 11111 222222222222222222222222222 4444444444444444444 22222222222222 1111 111 11111 1111 1 2222 111 11 1 11111 11111 11 33333333333333 22222222222 11 1 1 11111 11 1 11 222 111 111 11 1111 1 1111 1111 11 1 11 1111 111 111 1 111 111 11111 11111 3333333333333333333333333333333333333333333333333333333333333333333333 111 22 11 1 44444444444 222222 11111111 22222222 111 11111 11 22 8888888888888888888888 111 1 2222222222222222222222222222222222222 3333333333 22222222 444444444444444444444444 111 222222 1 1 44444444444 1 2222 11 1 1 1 1 1 1 11 1 22222 222 1 1 1
lowQualScore : 8 4 4 666 55 4 8888 4 4 4 4 4 55 4 44 4 0 4 111111 4 55 4 4 111 00000 55 66666 4 4 0 7 666666666666666666666666666 0 8 55 55 1111111111111111111 4 77777777777777 4 4 4 66 777 66 8888 777 222 4 22222 888 5 5 0000 5 0 0000 66 66 4 66 66 4 55 4 4 4 4 4 7777 222 4 4 4 4 66 4 00 88 5 5 5 5 5 5 77 4 1 5 5 1 5 22222 0 55 5 77 3 5 00000 5 77 88 77 0 5 5 5 5 5 5 55555555555555 4 77 8888 77777777777 33 1 0 5 1 33333 33 5 2 1 33 5 0 5 5 5 777 111 77 000 5 5 33 0 2222 5 6 6 1 6 2 2222 3 6 6 4444 88 6 6 3 1 5 5 5 44 5555 5 5 5 5 0 555 66 5 5 5 000 1 5 1 5 0 5 7 5 77 5 5 77 000 333 777 4 4 4 4 4 9999 4 4 66 66 4 6 6 77777 11111 6 6 6 3333333333333333333333333333333333333333333333333333333333333333333333 2 6 000 6 6 6 1 99 1 6 6 6 6 5 5 5 5 5 5 888 66 5 5 5 5 5 5 5 66 66 5 11 5 33 5 77 9 33333333333 1 8 222222 00000000 11 6 888 88888888 333 111 3 55555 11 11 0 22 2222222222222222222222 444 0 8 77 4444444444444444444444444444444444444 9 8 1 5555555555 8 99999999 111111111111111111111111 444 8 0 333333 8 8 1 0 0 77 77777777777 3 2 1 66 3 5 8 1111 2 6 77 1 5 5 5 5 5 5 1 88 5 1 1 66666 1 1 000 5 5 5
lowQualScore : . . . ... .. . .... . . . . . .. . .. . . . ...... . .. . . ... ..... .. ..... . . . . ........................... . . .. .. ................... . .............. . . . .. ... .. .... ... ... . ..... ... . . .... . . .... .. .. . .. .. . .. . . . . . .... ... . . . . .. . .. .. . . . . . . .. . . . . . . ..... . .. . .. . . ..... . .. .. .. . . . . . . . .............. . .. .... ........... .. . . . . ..... .. . . . .. . . . . . ... ... .. ... . . .. . .... . . . . . . .... . . . .... .. . . . . . . . .. .... . . . . . ... .. . . . ... . . . . . . . . .. . . .. ... ... ... . . . . . .... . . .. .. . . . ..... ..... . . . ...................................................................... . . ... . . . . .. . . . . . . . . . . . ... .. . . . . . . . .. .. . .. . .. . .. . ........... . . ...... ........ .. . ... ........ ... ... . ..... .. .. . .. ...................... ... . . .. ..................................... . . . .......... . ........ ........................ ... . . ...... . . . . . .. ........... . . . .. . . . .... . . .. . . . . . . . . .. . . . ..... . . ... . . .
lowQualScore : 0 0 0 555 55 0 5555 0 0 0 0 0 55 0 55 0 3 0 555555 0 55 0 0 000 00000 00 44444 0 0 6 3 222222222222222222222222222 8 0 55 55 8888888888888888888 4 22222222222222 4 4 4 11 888 11 9999 888 222 4 55555 888 0 0 6666 0 0 6666 11 11 4 11 11 4 66 4 4 4 4 4 8888 222 4 4 4 4 11 4 66 22 0 0 0 0 0 7 99 3 0 7 4 7 7 66666 7 99 7 99 0 7 44444 7 99 00 77 1 7 7 7 7 7 7 66666666666666 3 99 3333 11111111111 66 4 1 7 4 99999 66 7 3 4 66 7 1 7 7 7 111 777 99 000 7 7 66 7 1111 7 7 7 7 7 3 7777 2 7 7 2222 33 7 7 5 4 7 7 7 11 0000 7 7 7 7 7 777 44 7 7 7 000 4 7 4 7 7 7 1 7 99 7 7 99 000 888 888 4 4 4 4 4 9999 4 4 11 11 4 6 7 33333 88888 7 7 7 0000000000000000000000000000000000000000000000000000000000000000000000 5 7 222 7 7 7 0 22 0 7 7 7 7 0 0 0 0 0 0 888 99 0 0 0 0 0 0 0 99 99 0 11 7 66 7 99 0 77777777777 0 0 444444 44444444 66 7 777 33333333 000 777 7 88888 66 00 8 00 2222222222222222222222 000 6 0 44 2222222222222222222222222222222222222 0 0 4 0000000000 8 22222222 888888888888888888888888 000 0 8 000000 0 0 0 0 0 88 22222222222 2 5 0 55 2 0 8 2222 5 5 55 0 5 0 0 5 0 5 0 00 5 0 0 00000 0 0 555 0 5 5
consensus : TTTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-ATGATCC-GGC-CTTTC-TCAT------CTC-CAAC--CCAA-A-C---TTTGTC-----TN-CAGAT-G---CA-CAG-GAAATATGGCGTGAA--TTTT-TA----GNGGG--C--GCGTCGAATTCC-AGG--CATTTTACAGG--AGAACC----AATAGA-A-AT-T--ATCTCTTG-ACACGT---TAAG-T-----TTTT-TG-A-AA--T---T--T----GT---T---TTGGTT-TTTCAT-----GCGTAGATT---TCTT-CGGC-A----TACTTA-G-TTT----C--CAAACA--GC-TTCAT--G--A-CC-GCG-TCCTTGT-TGA-TGG-TTTCTG-GTTGGT-A--CT---G-AGG-ATTTTC-T-ATGCTT--G-GTAA--TTC-AG-G-CT-CT-GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGCNA-GCTTTCTCGT-A----CGGTCC-TTTTTCTTCA-TCTTC--AAACCCGT-CG---A-TGAAATC-TTCATAGCTG--GATATAAAA-CGAGA-TATAATGGC-TG-T-TTGA-TTTTCGAA-TTCCT-CATCC--TGG-AT--A--TTTGTCGCCG--AT-A--TCA-----------AG--AT-CTC-CGA-GTTTTT---C-CTG--GA-GAATGGC-GT--CTA-CTAAATCCTT-AAT-CTGTTTTGCATCC-TC---CGCA-G-TCGTCT--C---CT-TA-T--GTCGG----TTCTTTTC-TCCTTGGACTTTGTTCTC-TGG-TCAG-ATAATTTCCTTTAAGC-G-GTCAC-GC-AGC----TT--T-GGAGG-ATATT-C-TT-TTTCG-CG-TTTTGA---ATCTTGT-C-TCT-GC-AGGGTT---TCTCG-G-TGTCTT-TC-AA---TGTG-TCC-TCAATG-CTCTTGA-AATG-TGTG--GC-C-TTCA--T---GGTTTT---CTTT---CA-TGCA-TCTG-AT-GC-AGA--CCGG-AAGC-TTG--CA--TTCCT-GACACGC-CAT--T--TCGTA-A---AG-GAATTCT-G-GATGGA-GTG----G-A----GGTGTTGACAG-A--T-C---GTG---------T-------GTNTG---------TCTCTCTC-CT-G-GTAG-GGGACGAT-GACGTG-GGATCTGGTGGCNTTGCTCTTG-GTGTGAC-GGTCCCGG-CATACCTGA-CACA-GGTTGTCGGT-ACAG-GTG-T-TACAGTA-ATAT-TC---AG--CGTTCGC-CTC-ACACTG-TGTA-CACT-CCAC-ATAGTG-CTGG--GCA--AACTTT-ATGT-TCCCGTCT-G--GACATCTG-T--AGATTGTAAAACAAAA-----CG---TAAAAA-ATC---GTAGCATGAT-ATATTACAAA-ATATG-G-TTNT--TT--GGGGGGTG---TAATNTATTTCTTC--ATAT--TCGTTTAATTCT----TA-AAT-----CG-T---TAA---ACTGAG-AGGACTGTGCAGA----TA--AA----AC-----GCGTTTATCCTGATTCAACAAAAAT-AAAGAAAA----------GAANAAACAA-------GTTTCCAC--G-----TGC--AAAGT------ATAAAACG---A-AAGTTG------AAAATA-A-ATANTT-TT-AAAAACA------TCA--AAATTTTATCACAANCATATTCATCACTC----ACAAGTTGATGTAACATACCTGGCCTTGAATNCAAAGTGTAAGACACCCAGCTGCAGTCCCAGTTATGTCGTAACATTTGGGTAGAATCTANATGACAAATTNTNGATGACACACCCNGGTAACAGATAGNTCTATGGAACGCCGCCTGGTATGTAACAAACATTATATAAATGTGT
Reference ( family-418 ) : TTTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-ATGATCC-GGC-CTTTC-TCAT------CTC-CAAC--CCAA-A-C---TTTGTC-----TN-CAGAT-G---CA-CAG-GAAATATGGCGTGAA--TTTT-TA----GNGGG--C--GCGTCGAATTCC-AGG--CATTTTACAGG--AGAACC----AATAGA-A-AT-T--ATCTCTTG-ACACGT---TAAG-T-----TTTT-TG-A-AA--T---T--T----GT---T---TTGGTT-TTTCAT-----GCGTAGATT---TCTT-CGGC-A----TACTTA-G-TTT----C--CAAACA--GC-TTCAT--G--A-CC-GCG-TCCTTGT-TGA-TGG-TTTCTG-GTTGGT-A--CT---G-AGG-ATTTTC-T-ATGCTT--G-GTAA--TTC-AG-G-CT-CT-GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGCNA-GCTTTCTCGT-A----CGGTCC-TTTTTCTTCA-TCTTC--AAACCCGT-CG---A-TGAAATC-TTCATAGCTG--GATATAAAA-CGAGA-TATAATGGC-TG-T-TTGA-TTTTCGAA-TTCCT-CATCC--TGG-AT--A--TTTGTCGCCG--AT-A--TCA-----------AG--AT-CTC-CGA-GTTTTT---C-CTG--GA-GAATGGC-GT--CTA-CTAAATCCTT-AAT-CTGTTTTGCATCC-TC---CGCA-G-TCGTCT--C---CT-TA-T--GTCGG----TTCTTTTC-TCCTTGGACTTTGTTCTC-TGG-TCAG-ATAATTTCTTTTAAGC-G-GTCAC-GC-AGC----TT--T-GGAGG-ATATT-C-TT-TTTCG-CG-TTTTGA---ATCTTGT-C-TCT-GC-AGGGTT---TCTCG-G-TGTCTT-TC-AA---TGTG-TCC-TCAATG-CTCTTGA-AATG-TGTG--GC-C-TTCA--T---GGTTTT---CTTT---CA-TGCA-TCTG-AT-GC-AGA--CCGG-AAGC-TTG--CA--TTCCT-GACACGC-CAT--T--TCGTA-A---AG-GAATTCT-G-GATGGA-GTG----G-A----GGTGTTGACAG-A--T-C---GTG---------T-------GTNTG---------TCTCTCTC-CT-G-GTAG-GGGACGAT-GACGTG-GGATCTGGTGGCNTTGCTCTTG-GTGTGAC-GGTCCCGG-CATACCTGA-CACA-GGTTGTCGGT-ACAG-GTG-T-TACAGTA-ATAT-TC---AG--CGTTCGC-CTC-ACACTG-TGTA-CACT-CCAC-ATAGTG-CTGG--GCA--AACTTT-ATGT-TCCCGTCT-G--GACATCTG-T--AGATTGTAAAACAAAA-----C----TAAAAA-ATC---GTAGCATGAT-ATATTACAAA-ATATG-G-TTNT--TT--GGGGGGTG---TAATTTATTTCTTC--ATAT--TCGTTTA--TCT----T--AAT-----CG-T---TAA---ACTGAG-AGGNCTGTGCAGA----TA--AA----AC-----GCG---A--------CAACAAAAAT-AAAGAAAA----------GAANAAACAA-------GTTTCCAC--G-----TGC--AAA-T------ATAAAACG---A-AAGTTG------AAAATA-A-ATANTT-TT-AAAAACA------TC---AAATTTTATCACAANCATATTCATCACTC----ACAAGTTGATGTAACATACCTGGCCTTGAATNCAAAGTGTAAGACACCCAGCTGCAGTCCCAGTTATGTCGTAACATTTGGGTAGAATCTANATGACAAATTNTNGATGACACACCCNGGTAACAGATAGNTCTATGGAACGCCGCCTGGTATGTAACAAACATTATATAAATGTGT
gi|1 : TTTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----C-G-TCTTG-T-CC-ATGA--GC-ATGATCT-GGC-CATTC-TCAT------CTC-CAAC--CCAA-A-CG--TTTGTT-----TC-CAGAT-A---CA-CAG-GAAATCTGGCGTGAA--TTTT-TA----GTGAG--C--GTTTTGAATTCC-AGG--CATTTTACAGG--AGAACC----AATAAC-A-AT----ATCCTTTG-ACACGT---GAAG-T-----TTTT-TG-A-AA--T---T--T----GT---T---TTGGTT-TT--AA-----ACGTAGAAT---TTTT-CGGCCA----TACTTA-G-TTC----C--CAAACA--GC-TTCAT--G--A-CC-CCG-TCCTTGT-TGA-TGG-TTTCTG-GTTGGTTA--CT---G-AGG-ATTTTC-T-ATGCT---G-GTAA--TTC-AG-G-CT-CC-TA-AACTTCAGA-TGGAGGATTTC-ATTT--CGCAGCGCAA-GCTTTCTCGT-A----CGGTCC-TTTTTCTTCG-TCTTC--AAACCCGT-CA---A-TGAAATC-TTCATAGTTG--GATATAAAA-CGAGA--ATAATGAC-TG-T-TTGA-TTTTCGAA-T-CCT-CATCT--TGG-A---A--TTTTTCGCCG--AT-A--TTA-----------AG--CT-CTC-CGA-GTTTTT---C-CTC--GA-GAATGGC-GT--CTA-CTAAATCCTT-AAT-CTGTTTGGCATCT-TC---CGCA-G-TCGTCT--C---CT-TA-TC-GTC-G----TTCTTTTC-TCCTTGGACTTTGTTCTCTTGG-TC-G-ATAATTTC-TTTAAGC-G-G-CAC-GC-AGC----TT--T-GGAGG-ATATT-C-TTGTTTCG-CG-TTTTGA---ATCTTGT-C-TCT-GC-A-GGTT---TCTC--G-TGTCTC-TT-AA---TGTGCTCC-TTAATG-CTCTTGG-AATG-TATG--AC-CTTTCG--T----GTTTT---CTTT---CA-TGCA-TCTA-AT-GC-AGA---TAG-AAGC-TTG--CA--TTCCT-GACAC-C-CAT--T--CTATA-A---AG-TAATTC--G-GATGGA-GTG----GAA----AGTGTTGACAG-A--T-C---GTG---------T-------GTGT----------TCTCT-TC-CTGG-GTAG-GGGAC-AT-GACGTGCGGA-CTGGTGGCTTTG--CTTG-GTGTGAC--GTCCCGG-CATGCCTGG-CACAGGGTTGT-GGTAACA--GTG-T-TACAG-A-ATAT-TC---AG--CGTTCGC-CTC-ACACTG-TGTATCACT-CCAC-ATAGTG-CTGG--GC---AACTTT-ATGT-CCCCGTCT-G--GACATCTG-T--AGATTGTAAAACAAAA-----CATTTTAAAAA-ATCACAATAGCATGAT-ATATTACAAAGATATG-G-TTCT--TTGGGGGGGGTG---TAATATATTTCTTCATATAT--TCA-TTA--TCT----TA-AAT-----TG-CACATAATACACTGAG-AGGACTGTGCAGA----TA--AA----AT-----GTGTTTATCCTGATTTAGTAAAAAT-ATAGAAAA----------GAACAAACAA-------GTTCTCAC--A-----TACATAAG-T------AGCAAACG---AGAAGTTG------AAAATAGA-ATATTTATT-AAAAACA------TCA--AAATTTTATCACAAATATATTCATAACGC----ACAAGTTGATGTAACATACCTGGCCTTGAATCCAAAG-GTAAGACACCCAGCTGCAGTCCCAGTT-TGTCGTAACATTTGGGTAGAATCTAGA--AC-AATTTTTGATGACACACCCCGGTAACAAATAGATCTATGGAACGCTGCTTGGTAT-TAACAAACA-TATATAAATGTGT
gi|10 : GT-ACAG-GTG-TATACAGTA-ATAT--C---AG--CGT-CGC-CTC-ACACTGCTGTA-CATT-CCAC-A-AGTG-CTGG--GCA--AACT-----AT-TCCCGCCT-G--GA--TCTG-T--AGATTGT-AAACAAAA-----CG---TAAACA-ATC-----AGCATTAA-ATATTTTAAA-AAAAA-A-TTG----T--AGATAGTA---CTAGTTATTATTAC--A-AT--TTGTTTAATTCT----C-------------C---CAA---AC--AG-AGGCTAGTGCAAACTGTTACGGATTTTACTCCGTGCG---G--------TATCAAAAAA-AAAAAAAAAAAATCGTGCAAAGAAACAA--------TCTCTGC--AGCAATTGC--AAA--------ATAAAACGCCAA-AAG-TGAAACACAAAATA-ATATGATT-TT-AAAAG-A------TCTTTTAATTTTAT---AGCCATATT--TCATTC----ACAAGCAAATGTa
gi|11 : TTTTTAATCTTC-GTTTCAGCT-T--TTG-CTTTCTTCTA-GATCTTGAT-CCTATTA--GCCATAATCA-GGC-CTCTT-TTATTCATTTCTC-AAAC--CCAA-A-TCTTTTTGTC-----TA-CAGAT-TATTTA-CAG-GAAATCTGTATTGAAAATCTT-GA----GAGGA--C--ACTTTGAATTCC-AGA--CATTTTACAGG--AGAACC----AATAGATATAT-G--ATCTGTTG-ACACGA---CACG-T-----TTTT-TGGA-AA--T---T--T----GT---TCTTTTGGTT-TTTCAT-----GCGTCGACT---TCTT-TGGC-A----TACTTA-GTTTT----C--CAAACATCGC-TTCAT--G--A-CC-CGG-TCCTTGT-TGA-TG---TTC-G-GTTTGT-G--TTAACG-AGG-A-TTTC-T-ATGCTT--G-GTAA--TTC--G-G-CTGCT-GTAAACTTCccctcagaagtttattgcttaagaatggatataactgggtatgtaactagaaaatgtgaaattttcatttaagcagtctgctgtatattgtctagaagtatttccgccgggcctgatgctctgtacattaaattagatgagctacttgacagcgaattctgacaaagataggtgaatagaaataaatatatattagtcgagtaacgtagttataaaaaaaattactgcttatagcttaagagacaaaagtgtacaaaattcgccagttggaattagtcgtga
gi|12 : aatttgTTTTAATCTTC-GTC-CAGGTTT--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-CCGATTT-TGC-TATTC-TCAT------CTC-CAAC--CCAA-A-C---TTTGTT-----TC-CAGAT-A---CA-CAG-GAAATCTGGCGTAAT--TTTT-TA----GTGAG--C--GTTTTAAATTCC-AAG--CATTTTACAGG--AGAACC----AATAAC-A-A--T--ACCCCTTG-ACACGT---GAAGTT-----TTTT-TG-A-AA--T---T--T----GT---T---TTGGTT-TTTCAA-----ACGTAGATT---TTTT-CGGC-A----TACTTACT-TTT----C--CAAACA--GC-TTCAT--G--G-CT-GCG-TCCTTTT-TTA-TGA-TTTCTG-GGTGGT-A--CT---G-AGG-ATTTTC-T-ATGCTT--G-GTAA--
gi|13 : tctgATCT-C-GTC-CAGC--T--TTC-TTTCC----A-G-TTTTG-T-CC-ATGA--GC-ATGATCC-A---CCTTC-CAAT------TTC-CTA---CCAA-A-C---TTTGTT-----TT-AAGAG-G---CA-CAG-GAAATAT----TGA----TTC-TATTCTGTAGA--CCAACATCG-ATTCCAAAG--CATTTT-TAAG--AGAACCG---AACAGA-A-A--T--ATCTCTTG-G-ACGG---CAAG-C-----GTCTATA-A-CA--C---T--TAAGCGT---TC--TTTGTTATTTCAT-----
gi|14 : tgttgtatTTGTAATCT-C-GTC-CAG---T--TTTCTTTCC----A-G-TTTTG-TTCC-ATGA--GC-ATGATCC-AGCACTTCC-TCAT------TTC-CTAC--CC-A-A-C---TTTGTT-----TA-CAGAG-G---CA-CAG-GAAATATGTTCT-AA--TTCTGTA-----TCCA--C--ACATCGAATT-C-AAA--CATTTTA-AGA--GGAACC-----ACAGA-A-A--T--ATCTCTTG-AGACGT---TAAT-T-----TTTC-CA-ATAA--T---T--TTGGGGG---T---TTGGTT-TTaatgt
gi|15 : ctgTTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-ATGATCT-GGC-CATTA-TCAT------CTC-CAAC--CCAA-A-C---TTTGTT-----TC-CAGAT-A---CA-CAG-GAAATCTGGCGTGAT--TCTT-TA----GTGAG--C--GTTTTGAATTCC-AGA--CATTTTACAGG--AG
gi|17 : ctg--CATACA--G---TCACTGG--A-TC-GCG-TCCTTGTCTGA-TGG-ATTCTG-GTTGGT-A--CTC--G-AGG---TTTC-T-ATGCTT--G-GTAA--TTC-AG-G-CT-CTGGT-AA
gi|2 : atacttaggtgtcatacctgttgtgctcccaaaaaTTGTTAATCT-CCGTC-CAG---TATTTG-TTTCC----ATG-ACT-G-T-CA-A-GATAGC-A-GATTCTGGC-CTTTCACCAT------TTCTCAACAGCCAATATC---TTTGTCGTGTGTATCAGATTGT--CATCAGTGAAATATT-CG-GAA-------------GAAGATTC--ACGTCGA-TTCC-GAGATCATTTTACCGGTTCTAACCTTTAAGTATG-A-GT-TTCATCTCCCGGACACGT---TTCG-TATTTTTTTT-TG-G-AA--TATTT--T----GT---T---CCGGTT-TTTCATATGGGGCGTAGATTATTTCTTTCGGC-AGGAATTCTTA-G-TTT----TTTCAAGCA--GC-TTCAT--GTTA-CCCGCGGTCCTTGT-TGAGTGG-TTC--G-GTTGGT-GATCT---GTAGGTATTTTCAT-ATGCTT--GTGTAAATTTCTAGTGTCT-CG-TT-AACTTCAGACTGGATGATTTCTATTTTTCGCAG-GCAACGCTTTCTTGT-AATGGTGGT---TTTTTCTTCAATCTTTCAAAACCCCT-CG---AATAAAATC-TTCATAGCTG--GAAATAAAG-CGAGA-TATGATGCC-TGTT-TTGA-TTTCGAAA-TTCTTACA-CCGATGGCAT-----TTTGTCG-CG--AT-T--TTATAATTGTTTCTAGTTATCCTT-CGATGTTTTC---G-CTG--GA-GAGTGGT-TTTGCTAGCTAAATCCTTAAAT-TTGTTTTGCATCC-TC---TGTATA-TTGTTT--CGCTTT-TACT--GTCTGTGTTTTTTTTTCTTCCTTGATCTTTGTTCTC-TGG-TCAG-ATCATT--CTTTAAGG-GCGTCACTGCTAGC----TTTGT-GGAGA-AAGTTGCATT-TTTCG-CG--TTTGAAATATTTTGT-CTTCT-GC-AGGGTTTTCTTTCGTGTTGTCTTGTC--A---TGTGTTCC-TC-ATG-TTTTTTCTAATG-TGTG--GTAC-TTTATTT---GGTTTTTTCTTTT---CA-TGCA-TCTG-AT-GC-AGA--CCGG-AAGCTTTG--CA--TTCCT-GACACG
gi|20 : ttctgatttattctagttgtcggtcttcctttcggattgttgtactttatactgttgcttgagcgtcgattgtacagtaaatcaccatcggtaatgtcatccgttgtcttaagataaccgatacattgaaagggacgcatagatggTACAAA-ATGTG-G-TTTC--TTTAGGGGGGTG---TAATTTATTTCaaggcgtcatgttcagtattttagagattatttttctggagtgatgtggatcaggttttttcggtttgtttttggtatgtgtttatcgtgtgttctctgttcgtcct
gi|3 : TTTTAATCT-C-GTC-TAG---T--TTG-TTTCC----A-G-CCTTG-T-CC-ATGA--GC-ATGATCT-GGC-CTTCC-TCAT------CTC-CAAC--CCAG-A-C---TTTGTC-----TG-TAGAT-A---CA-CAG-GAAATATGACGTGAA--TGTT-TT----GAGGG--C--ACATTAAATTCA-AGG--CACTTTACTGG--AGAACC----------------------TTTTG-CCATGT---TCAG-T-----TTTT-TA-A-AAATT---TGCT----GT---T---TTGGTT-TTTCAT-----GCGTAGATT---TCTT-CGGC-A----TATTTA-G-TTTT---C--CAAACA--GC-TTCAT--G--A-CC-GCG-TCCTTGT-TGA-TGA-TTTCTG-GTTGGT-A--CT---G-AGG-ATTTTC-T-ATGCTT--G-GTAA--TTC-AG-C-CT-CT-GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGATA-GC-TTCTCAT-A----CGGCCC-TTTTTCTTTA-TCTTC--AAACCCGTGCGGTCA-TGAAATCGTTCATAGCTGCCGATATAAAA-TGAGA-TATAGTGGC-TG-T-TTGATTTTTCGAA-TT-CT-CATCT--TGG-----A--TTTGTCGCTG--AT-ATTTCA-----------AG--ATGCTC-CGGTGTTTTTCTGC-CTGC-GAGGAATGGCGGT--CCA-CTAAATCCTT-AAT-CTGTTTTGCATCTGTCT--CGCACG-TCGTTTTCC---TT-TA-T--GTCGG----TTCTTTTC-TCCTTGGACTTTGTTCTC-TGGTTCAG-ATAATTTCTTTTAAGC-G-GTCAT-GC-AGC----TTGAT-GGAGGTATATTGC-TT-TTTCA-CGTTTTTGA---ATCTTGT-C-TCTCGC--GGGTTG--GCTCT-G-TGTCTT-TC-AATATTGTG-TCCTTCCATGTTTCTTGA-AGTGTTGTGGCGC-T-TTTA--TGTGGGTCTT---CTTCTTGCA-TACATTCTGTAT-GCTAGATTCTGGCAAGC-TTGCACA--TTCCC-GAC-CACACATGGT--CCGTA-AAAGAG-GAATTCT-G-GTAGGA-CTG----------------TGACAG-AG-T-CTCGGTGCTTTGGAGAT-------GTTGG---------TC-CTCTCTCT-G-GTAG-GGGACGATAGACGGT-GTATCT-GTG--CTTGCTCTT--GT-TGACGGGTCCCGGACATACCTGACCACA-GGTTGTCGGT-ACAGTGTGTT-TACAGTA-ATAT-TC---AG--C-TTCGC-CTC-ACATCG-TGTA-CACT-CCAC-ATA-TG-CTGA--GCA--AACTTT-ATGG-GCCCGTCTCGGTGACATCTG-TTAAGATTGCAAGA
gi|4 : tttgGTAGATT---TCTT-TGGC-A----TA-TTA-G-TTTTTATC--CAAACA--ACATTCAT--G--A-CC--CG-TC-TTGT-TGA-TGG-ATTCTGCGTTTGT-T--AT---G-AGG-ATTTTC-TTATGTTTTTG-GTAAA-TTC-AG-G-CT-CT-GT-AACTTCAGACTGGAGGATTT--ATTT--CGCAGCGCTA-GCTTCTTCGTTA----CG-TCC-TCTT-CTTCA-TCTTC--AACACGGC-CG---T-TGAAATC-TTCATAGTTC--GATAAAAAAACGAGA--ACAATGGCCTG-T-TT-A-TTTTCGAA-TTCCT-TATC-----G-AC--AGATTTGTCGCTG--ATTA--TCA-----------AG--AT--TC-CGA-GTTTTT---T-CTGAGGA-GAATGGT-GT--CTA-CTAAGTCCTT-AATACTGTTTGGCATCT-TCATCCACA-G-TCGTCT--C---CTATA-T--GTCGT----TTCTTTTC-TCCTCGGACTTTGT-CTC-TGG-TCAGCATAATTTCTTTTAAGTTG-GTCAC-GC-AGC----CT--T-TGCAG-A-ATT-A-TT-TTT-G-CA-TTTTGA----TCTTGT-C-TCT-GCCAGGGTT---TCTTG-G-TGTTTT-TCCAA---TGCG-TCC-TTAAT--CTCTTGA-AACG-TATG--AC-C-TTCA--T---GGTTTTT--CCTT---CA-TACA-TCTG-ATTGC-ATA--ACGG-AAGC-T-G--CA--TTCCTTGACACGC-CAT--TGTTCGTA-A---AGAGAATTCTTG-GATGGA-----------------TGT-GACAG-GATT-C---GGG---------T-------GTCTGGAGATATTGCCTCTATT-CT-T-GTATTGGGACGAT-ATCGTG-GGATCTG-TGGCGTTGCTCTTG-GTGTGAC-GGTCCCGG-CATACCTGA-CACA-GGTTGTCTGT-ACAG-GTG-T-TACAGTA-ATAT-TTTCAAG--CGTTCGC-CTC-ACA-TG-TGTA-CATTTCCAC-ATAGTGGCTGG--GCA--AACTTTGATGTGTCCCGTCT-GC-GACATCTGCT--AGATTGTAACA-AAAA-----CG---TAAATA-ATT---GTAG-------AT-TTAC-------TG-G-TTATCATT--GG----TACAATAATGAATTTGTCA--AT-T--TTGTTTA--TTT----T--G-T-----CGAT---TAA---AC--AA-AGGACTGTGCAAA-----A--CA----AC-----A-A---A--------CAACAACAAT-GAAGACAA----------GAA---ACAA-------GTTTACACTTG-----TGC--AAA-T------TTAAAACG---A-AAGTTG------AAAATA-A-
gi|5 : TTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-ACTTG-T-CA-ATGA--GC-ATGATCT-GGC-CTTCA-CCAT------CTC-CAAC--CCAA-A-C---TTTGTC-----TA-CAGAT-G---CA-CAG-GAAATACGAAGTAAA--------------------C--ACGTCG-ATTCCGAGA--CATTTTACCGG--CAACCT----AGTATA-A-GT-TTCATCTTCCG-ACACGTTTCTA---T-----TTTT-TG-A-AA--T---T--T----GT---T---CCGGTT-TTTCAT-----ACGTAGATT---TCTT-CGGC-A----TACTTA-GTTTT----C--CAAACA--GC-TTCAT--G--A-CC-GCG-TCCTTGT-TGA-TGG-TTTCTG-GTTGGT-A--CT---G-AGG-ATTTTC-T-ATGCTT--G-GTAA--TTC-AG-G-CT-CT-GT-AACTTCAGACTGGAGGATTTC-ATTT--CGCAGCGCAA-GC-TTCTTGT-A----TGGTGG-TTTTTCTTCA-TCTTC--AAACCCCT-CG---A-TAAAATC-TTCATAGCTG--GAAATAAAG-CGAGA-TATGATGGC-TG-T-TTGA-TTTTCGAA-TTCTT-CATCC--AGG--C--A--TTTGTCGCTGATAT-A--TCT-----------AG--AT-CCT-CGA-GTTTTT---C-CTG--GA-GAGTGGT-GT--CTA-CTAAATCCTT-AAT-CTGTTTTGCATCC-TCT--CGTA-A-TTGTTT--C---CT-TA-C--GTCGG----TTTTTTTC-TCCTTGGACTTTGTTCTC-TGG-TCAG-ATCATTTC-TTTAGGC-G-GTCAC-GC-AGC----TT--TGGGAGA-ATATT-C-AT-TTTCG-CG--TTTGA---ATATTGT-C-TCT-GC-AGGGTT---TCTCG-G-TGTCTT-TC-AA---TGTG-TCC-TCAATG-TTTCT-A-AATG-TGTG--GC-C-TTTA--T---GGTTTT---CTTT---CA-TGCA-TCTG-AT-GC-AGA--CCGG-AAGC-TTG--CA--TTCCT-GACACGC-CAT--G--TCATA-A---GA-GAATTCT-G-GATGGATGTGACA-G-GTTTCGGTGTTTGGAG-G--TAC---GTG---------T-------GT-TC---------TCTCTCTC-CT-A-GTAA-GGGACGAT-GACGTG-GGATCTGGAGGCATTACTCTTG-CTATGAC-GATCCCGG-CATGCCTGA-CACA-GGTTGTCGGT-TCAG-GTG-T-TACAGTA-ATAT-TC---AG--CGTTCGC-CTT-ACACTG-TGTA-CACT-CCAC-ATAGTG-CTGG--GCA--AACTTT-Acacctaaaaccaaacactttagatataagtctcatac
gi|6 : TTTTAATCT-C-GTC-CAG---T--TTG-TTTCC----A-G-TCTTG-T-CC-ATGA--GC-ATGATCC-GGC-CTTTC-TCGT------CTC-CAAC--CCAA-A-C---TTTGTC-----TA-CAGAT-C---CA-CAG-GAAATATGACGTAAA--GTAT-CA----AGGGG--T--ATATCGAATTCC-CGA--CATTTTACAAC--AGAATC----GATGGA-A-ATATG-ATCTTTTG-GCACGTTTCTA---C-----TTTT-TG-A-AA--T---T--T----GTTGGT---TTAGTT-TTCCAT-----ACGTAGATG---TTTT-CGGC-A----TACTTA-G-TTTA---C--CAAACA--GC-TTCAT--G--ACCC-GCG-TCCTTGT-TGA-TGGTTTTCTG-GTTGGT-A--CT---G-AGG-ATTTTC-T-ATGCTT--G---AA--TTC--G-G-CT-CT-AT-AACTTCAGACTGGAGGA-TTC-ATTT--CGCAGCGCTA-GC-TTCTCGC-A----AGGTCC--TTTTCTTCA-TCTTC--AAATCTGT-CG---A-TGAAATC-TTCATAGTTG--GATATAAAA-CGCGA--ATAATGG--TG-T-TTGA-TTTTCGAA-TTCCT-CATC-----G-ATAGA--TTTGTCG-CG--AT-A--TCA-----------AG--AT-C-C-CGA-GGTTTT---C-C-G--GA-AA---GT-GT--CTA-CTAAATCCTT-AAT-CTG-TTTGCGTCT-TC---TCCA-G-TCGTCT--C---CT-TA-T--GTCGG----TTCTACTC-TCTTatttataaaatattgaaaagtatcgtgtatatgtccgtaagtggtcga
gi|6 : ctgT---CTTT---CA-TACA-GCTG-AT-GC-AAA--CCGG-AAGC-TTG--CA--TTCCT-GAgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtctttcatacagctgatgcaaaccggaagcttgcattcctga
gi|7 : ctgttttaatctcgtccagtttgtttccagtcttgtccatgagcatgatccggcctttctcgtctccaacccaaactttgtctacagatccacaggaaatatgacgtaaagtatcaaggggtatatcgaattcccgacattttacaacagaatcgatggaaatatgatcttttggcacgtttctactttttgaaatttgttggtttagttttccatacgtagatgttttcggcatacttagtttaccaaacagcttcatgacccgcgtccttgttgatggttttctggttggtactgaggattttctatgcttgaattcggctctataacttcagactggaggattcatttcgcagcgctagcttctcgcaaggtccttttcttcatcttcaaatctgtcgatgaaatcttcatagttggatataaaacgcgaataatggtgtttgattttcgaattcctcatcgatagatttgtcgcgatatcaagatcccgaggttttccggaaagtgtctactaaatccttaatctgtttgcgtcttctccagtcgtctccttatgtcggttctactctcttgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnng-C-TT-TTTCG-CG-GTTTGA---ATCTTGT-C-TCT-GC-ATGGAT---TCTCG-G-TGTCTT-TC-AA---TGTG-TCC-TTAATG-CTCTTGA-A-TG-TATG--AC-C-TTCA--T---GGTTTT---CTTT---CA-TGCA-TCTA-AT-GC-AAA--TAGG-AAGA-TTG--CA--TTCCT-GACACGC-CAT--T--TCGTATG---AG-GAATTCT-G-GATGGA-GTGACAGG-ATTC-GGTGTTTGGAG-A--T-----GTG-----------------GTCT-----------CTCTCTC-CT-G-GTAG-GGGACGAT-GACGTG-GGATCTGGTGGCTTTGCTCTTGTGTGTGAC-GGTCCCGG-CATACCTGA-CACA-GGTTGTCGGT-ACAG-GTG-T-TACAGTA-A-ATATC---AG--CGTTCGC-CTC-ACACTG-TGTA-CACT-CCAC-ATAGTG-CTGG--GCG--GACTTT-ATG--TCCCGTCT-G--GACATCTG-T--AGATTGT-AAACAAAAAAATTT----TAAAAACACA---ATAGCATGATAATATTACAAA-ATATG-GTTTCT--TT--AGGGGGTG---TGATTTATTTCTTC--ATATAATCATTTA--TCT----TAAAATGCACATA-T---TAA---ACTGAG-AGGTTTGTGCAGA----TA--AA----AT-----GTGTTTATCCTGATTCA--AAAAAT-ATAGAAAA----------GAACAAACAA-------ATTCCCAC--A-----TGC--AAAGT------ACAAAACG---A-AAGTTG------AAAATA-A-ATATTT-TTCAAAAACA------TCA--AAATTTTATCACAATC-TA-TCAT-ACTC----ACAAGTT-ATGTAACATACCTG--CTTGAATACAAAGTGTAA-ACACTCAGCTGCAGT-CCAGTTATGTCGTAA-ATTTGGGTAG-ATCTATATGACAAATTATGGATGA-----CCGGGTAACAGATAGCTCTATGGAACGCCGCC---TATGTAAC-AACATTATATAAATGTGT
gi|8 : ---CA-TACA-TCTG-AT-GC-AGA--TCGG-AAGC-TTG--CA--CTCCT-GACA
gi|8 : T-ACAA-GTG-T-TACAGTA-ATAT-TC---AG--CGTTCGC-TTC-ACACTG-TGTA-CACT-CCAC-ATAGTG-CTCG--CCA--AACTTT-ATA--TCCCGTCT-G--GACATCTG-T--AGATTGT-AAACAAAA-----C-----AAAAA-A-C---GTAA-ATAAT--CA--ACAAA-ATATGCA-TTGT-------AGATATA---TAGTATATTAC------TAT--TTGTTTGATTCTGCGAT--AAA-----CA-T---CGA---ACTGTGTAAGA-TGAGAAGG----GG--AA----AA-----ACG---A--------AAACAAAAACAAAAAAAAA----------GAAGAAAAAAGGAAGTGGTTTCCAT--T-----AGC--AAAGTAAAGAAATAAAACG---A-AAGTTG------CAAAAA-A-ATAATT-TT-AAAATTATGGAATTC---AAA-TTCATCACAAGCA-ATT-ATCACTCAGTAACAA-TTGCTGTAAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaagtgttacagtaatattcagcgttcgcttcacactgtgtacactccacatagtgctcgccaaactttatatcccgtctggacatctgtagattgtaaacaaaacaaaaaacgtaaataatcaacaaaatatgcattgtagatatatagtatattactatttgtttgattctgcgataaacatcgaactgtgtaagatgagaaggggaaaaacgaaaacaaaaacaaaaaaaaagaagaaaaaaggaagtggtttccattagcaaagtaaagaaataaaacgaaagttgcaaaaaaataattttaaaattatggaattcaaattcatcacaagcaattatcactcagtaacaattgctgtaaaaaaggaaataactataattgacccacgtgaaatttcataaaacaagtatcagtataggcttccgtgtaagtacattcactataccgctatatatagaataaattcccctgccatagctgcacttgacggaaattctgaattgaaatgaaaatatttgccagtatgtagttataaaaaaaaccatacggttacctgcttaactatagattgtcaaattgcagtcggaattcgtcgtcaa
gi|9 : catacatctgatgcagatcggaagcttgcactcctgacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGACTG-AGGATTTT--TTT--GGCAG-GCTA----CTCT-GC-A----TGGTCCACTTTTCTTTA-TCAT---AAACC-GT-CA---A-TGAA-TC-TTCATA-TTA--GATATAGA---GAGAATATA-TGGC-TG-TCTTGA-TTTTCGAAATTCTT-CATCC--TGG-AT--A--TT-GT-GCTG--AT-A--TCA-----------AGT-AT-CTTACGA-GTTTTT---TTCTG--GA---ATGGCCGTA-CTA-CTAA-TCC---AAT-CTGTTTTGCATCC-TCG--CGCA-GATCGTCT--C---CT-TA-TCTGTCGG----TTCTCTTC-TCCTTTGACTT-GTTCTC-TA--TCGG-ATAATTTTCTTTAAG-------GC-GC-AGCAAGATT--T-GGAAG-ATATT-C-TT-TTTCGGCG-TTTTGA----TCTTGTTC-TCT-GC-AGGGTT---TCT-G-A-TGTCTT-CA-AA---TGT--TCG-TCAATG-TTTCTGA-A-TG-TGTG--GC-C-TTTA--T---GGTTT----CTTT---CAATAAA-TCT---T-AC-AGA--C-GG-AAGT-TTG--CAAGTTC---AGCAC-C-CAT--G--TCGTA-A---GA-GAATTAT-GTGATGGA-------------------TTGACAGGA--T-C---GCG---------TTTTGGAGATGTG---------TCTCTCCT-CT-GTGTAG-GG-ACGAT-GACGTG-GGATCTGGTGGCTTTGCCATTT-GGGTGAC-GGT-CCGG-CATA-CTGA-CACA-AGTTGTCGGT-ACAG-GAT-T-TACAGTATATAT-TC---AAGTCGTTCGCGCTCTACACTG-GTTA-CACT-CCACAATAGTG-CTGGCTGCAATAACTTT-ATG----CCGTCT-A--GACATCTG-T--AAATGGT-CGACAAAA-----aaaaggaaataactataattgacccacgtgaaatttcataaaacaagtatcagtataggcttccgtgtaagtacattcactataccgctatatatagaataaattcccctgccatagctgcacttgacggaaattctgaattgaaatgaaaatatttgccagtatgtagttataaaaaaaaccatacggttacctgcttaactatagattgtcaaattgcagtcggaattcgtcgtcaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTTCTGATTAGCAGGTTGTGGGTCTTCAGTCACTGCGTGGTGTGATTTCGTTGTATGCTGTCATTTGATTCGTCCGATGTACAGATAAATCACCAACCCGAGTACAGACGTGAAGAAGCCGAACATAAAGA
Unaligned ( gi|18 ): GTTCTGATTACAGTTGTGGTCTTCCTTTCTGATGTGTATTTCTTTATACTGTTGTTTGAGCTGTCGATGTACAGTAAATCACCATCGTAAGTCACCGCAAGA
Unaligned ( gi|19 ): CATCGCAAGTCACTGCTTTTTGTGATAACCGTTAAATGAGC