lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111111111111111 22222222222222222222222222222222222222222222222222222
lowQualScore : 555 33333333 1 1 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11111 222222222222222 11111 111 1111111 66666666666666666666666666666 1111111111 1 22222 111111 111111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 22222222 1 2222222222222222 1111111 1 11111111 1111111 111111111111111111111111111111111111111111111111111111111111111111 111 111 222 111 111111 111111111 55555555555 3333333 11111 3333333 222 22222222222222222222222222222222222222222222222222222 111 11111111 111 555555555555555555555555555 11 6666 1 1 1
lowQualScore : 6 77 111 4 11111111 5 5 5 5 5 1 1 5 66 1 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 77777 77 777 444444444444444 99999 111 9 66 7777777 99999999999999999999999999999 5 6666666666 5 9 8 44444 5 5 666666 555555 5 5 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 6 111 44444444 1 2 2222222222222222 77 77 5 8888888 1 8 66666666 0000000 777 999999999999999999999999999999999999999999999999999999999999999999 000 77 222 5 777 66 77 000 888888 555555555 11111111111 3333333 99 7 77777 0 0000000 111 9 33333333333333333333333333333333333333333333333333333 5 5 2 333 99999999 0 777 1 333333333333333333333333333 1 99 1 00 99 6 0000 0 1 3 6
lowQualScore : . .. ... . ........ . . . . . . . . .. . ............................................................................................................................... . ..... .. ... ............... ..... ... . .. ....... ............................. . .......... . . . ..... . . ...... ...... . . .................................................................................................................................................................................... . ... ........ . . ................ .. .. . ....... . . ........ ....... ... .................................................................. ... .. ... . ... .. .. ... ...... ......... ........... ....... .. . ..... . ....... ... . ..................................................... . . . ... ........ . ... . ........................... . .. . .. .. . .... . . . .
lowQualScore : 0 99 000 0 77777777 7 0 7 7 7 7 7 0 99 6 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 6 22222 00 111 888888888888888 88888 000 4 44 2222222 33333333333333333333333333333 7 7777777777 7 6 7 44444 0 0 000000 888888 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 777 22222222 0 0 7777777777777777 99 99 7 1111111 4 0 77777777 3333333 888 555555555555555555555555555555555555555555555555555555555555555555 000 99 666 7 777 11 99 000 111111 555555555 22222222222 6666666 00 8 22222 2 8888888 000 0 99999999999999999999999999999999999999999999999999999 0 0 2 222 99999999 1 333 7 777777777777777777777777777 0 22 0 22 22 7 8888 0 4 2 0
consensus : ATACACAA--TATTGTA---ATTGTGCTCCTGAT--AAT---TT-ACTG-TTCGT-C-AGTTTTCTACAAAACTCTTTGTAGT--ATTACT------NTTCC-------------------T--AC------------------------TATTC---TATTTTATCAAT---TAATG-T--TT--C------AATA------------------C--TNTTCTTG---CTAAANATAGG--GCNACGGACTCTA--CAAAAAGT--GA--GCATTTTTGC-ACACAA---A-GTTCC-AGT-AT-T--T-------A-G-------GAGTA-A---AT-----T-TT-ATTGGAATTAACATG----TT-AACA-GATG-C----CATACC---TGAAATA-TATT-TGTAAATTG-----------------GG-TGT--AT------AT------ATATA-------CAGC--------------TAAGT---GT-AC-TA---T---AACC--------------CTG----AAAAG----TTGAAAATATCA---T---TCA------GG--TG---C-TG----TCAATACCA-TTTC---TT--------CTGTTAT--------T---T---TTC--AAC--CAAA-TCGGAAACTGTAAATTTTGAAATAA--AGT-GTATAAAAT-GC-TTTTACT---ACTAAGA-----------TG--AA---------------T-------------TC------------T-----TGGAT---TTCAC--CGAGC-AAATAA-TTTNTACAAA--TACAT---GCAATC-----AAATTT-GACACTAAA---ACA--CTCAAAATCATGTATA------TTTTNCAATTTCACCAACTN-TTCT--TNA--TTACA-AAATAATGCG---TACGTA-G-ACAT-TA--TAAA--AATGT--CATA-C-------ATA-CTG-TTTT-GGAAAGCTGAAAGTGTCTAC-CT--TA-CAGTGATGTTATTCTTGAAACT-GCATCTATT-A---AAA----C----A-AGAT---ATCTGCTTCCATATT--AGGTTAG-TA--G-AANTT-CCACCCTGATTGTGTTTTAG
Reference ( gi|1 ) : ATGCACAA--TATTGTA-CCATTGTGCTCCTGAT--A-T---TT-AATG-TTCAT-C-AGTTTTCTACAAAACTCTTGGTAGT--ATTACT------ATTCC-------------------T--AC------------------------TATTC---TGTTTCGTCAGT---TGATG-T--TT--C------AACA------------------C--TTTTCTTA---CTAAGAATAGG--ACAACAAACACTG--CGAAATGT--GA--ACATTTCTGC-ACACAA---A-GTTCC-AGTGAT-T--T-------A-G-------GAGTA-A---AT-----T-TTCATTGAAATTAACATG----AT-AACA-GATG-T----CATACC---TGGAATA-TATT-TGTAAATT------------------TG-TGT--A-------AT------ATACA-------CAAC--------------TAAGT---GT-AT-TA---C---AACC--------------CTG----AAAAG---GTTGAAAATATCA---T---CCA------AG--TG---C-TG---GTCAATGCCA-TTTC---TT--------CTGTAAT--------T---T---TTC--AAC--CAAA-TCAGAAGTTGTAAATTTTGTAATAA--AGT-TTATAAAAT-GC-TTTTACT---ACTAAGA-----------TG--AA---------------T-------------TC------------T-----TGGAT---TTCAC--CAAAC-AAATGATTTTTTACAAA--TACAT---GCAATT-----AAATTT-AACACTAAA---ACACCCTTAAAATCATGTATA------TTTTTCAATCTCACCAGCTT-TTCT--CCA--TTA-A-AAATGATGCGTGTTATATATATACATGTAA-TAAA--AATGTTACATA-TAATAAAAATA-ATG-TTTT-GGAAAGCTGAAAATATCTAC-CT--TT-CAGTGATGTTATTCTTGAAACT-GTATCTATT-A---AAA----C----A-AGAG---GTCTGCTTTCATATT--AGGTTAA-TA--G-AA----CCAGCCAGATTCTGTTCTAG
gi|14 : ATACACAA--TATTGTG---ATTGTGCTCCTGATCAA-TACATT-ACTG-TTTGT-C-AGCTTTCTGCAAAGCTCTTTGTAGT--GCTCCT------AAAGA-------------------TAAACATGAAAATA---------------TATTC---TATTTTAT--GT-----ATA-T--------------ATA------------------C--TTTTCTTG---CTAAAAATAAG--GCTACAAACTCGA--CAAAA
gi|12 : atgaaatgttagaatttaaatggaagacaaatatacacatgtacttattcaaaatttctattttgtctatatctgaaaatgctacgctgtttgtTACACAA--TATGGTA----TTGTGCTTCTGAT--AAT---TT-ACTG-TTCAT-C-AGTTTTCTACTAAATTTT--GTAGT--ATTACTTTTTCAAGTCC-------------------T--AAAAATGAAAAAAAAAGAAAA-----TATTT---TGT--CATCAAT---TAATGCT--TT--T------GATA------------------C--TTTTCTAA---CTAAAATTAGG--GCCACAGACACTA--CAACAAGT--GA--GCATTGTTGC-ACACAA---A-GTTCCAAGTGTC-TGAT-------A-GTCATACTAAGTT-A---A------T-TTCATTGGAATTAACATG----TT-AACA-AATG-C----CATGCC---T-------TATT-TACAAagcaagtatattt
gi|6 : acggattttTACACAA--TATTGTA---GTTAGG----------------TT-ACTG-TTCAT-C-AGATTTCTAAAAAATTCATTGCAAT--ATTACA------TTTTC-------------------T--ACCACTAAAAATAAATAAGAGAATAATACTC---TATTTTATCAAT---TAATG-T--TTT-C------AATA------------------C--TGCTCTTA---ATAAACATAGG--GCAATGGACTCTA--CCAAAAGA--GA--GCATTTTTGC-ATACAA---C-GTTCA-CGTTAC-C--TTATATCGA-G-------GAGTA-A---AT-----T-TTTATTGGAATTAACATG----TA-AACA-GATG-C----CATATC---TGAAATA-CATT-TGTAAATTG-----------------GG-TGTCAA-------AG------ATACA-------ccatatacaata
gi|15 : tatgttttatagtttgaatttcatactttcattctagaaaaactgggacaaaaacaaagtttctgaatattataagtcatttaattttggagctacggactctactgtgtatTACACAA--CATTGTA-T-AT-ATACTCCTGAT--AAT---TT-ACTG-TTCAT-C-TGTTTTCTACAAAACTTTTGG-AAT--ATTACT------TTTCCAAACCCTAAACAAAGAAAAT--AC------------------------TACTC---TATTCTATCAAT---CAATA-T--TT--CAAATTAAAAA------------------C--TTTTCTCAG--TTAATAA-AGA--AAGACGGAC-CTA--TAAAA-AT--GA--GCATTTTTGC-ACATTA---A-ATTCC-AATTAT-T--T-------A-tccatatacaatatttaagcaaagtatactgtaacttggaa
gi|5 : aagtttctgaattatttatgttttaggaactctgcattcgTACACGA--TATTGTAGTCAAT-TACTCCTAAT--AAT---CC-ACTG-TTCAT-C-TGTTTTCAACAAAATTCATTGTAGT--ATTCCT------GTTCT-------------------T--GC------------------------TAata
gi|2 : actctactctgTACATAG--TATTGTA---AATGCGCTCTTGATG-A-T---TT-ACTG-TTCGT-T-AGTTTT-TACACCATTTTTTGTAGC--ATTTCT------ATTCC-------------------aacatacagctacatactccacaaaaagagagcattttttcgaaagaacgttccatttgataaatacggatttttggatttaagatgttaacggatgccataccagaaatatatttgtgaattaggcctagttttcaaatatacaactatgtatggtgttttaagctaaatattcagtaactgtagcaaaaacatgttgaaaatacatgtatcacgcttgcatgctcatacgaattttatgtcctatcattatatttcaaccaaattgtaaaattcaaataaaatgtacaaaatgttttacaactaagaaaattaaatacttaattcttggaattcaccgtgcacatattctttacaaacacatgcagtcaaacttgacacagatcacac
gi|27 : atttcctaatgctcctgtttttatctagaatttgataactattaatatttcttgcaaaattattttttcaaaaattatccttgttatggtcattgaaattatgccagcataaaaatattatgtatatatgcagtgcttcctagtctcaatttcacactttcagtgagcagttggcttattacaaaattctagaaaaaatggaaaaagaaaacagttctgaatattcaattgtaggtctatgaacttgactgtgTACACAATATATTGTA---ATTATGTTTCTGAT--G-T---TTCACTGCTTCATACGAGTTTTC-AT-AAACTCTT-ATAGT--ATTaagtcctaaaaataaaaagagaagataggagtatattaaattttatcaattactgttttcttcctataactagggctagggcctgtacaaaaagtgagaatttttgcacacagttgcaattagagtaaatttttactggaattaatgtgttaaataacatatgctatgtatacctgaaatataaatgtattcaaccaatttaatatctgtaaagtttgaaa
gi|5 : tcatttgattgtggagctacgggttctgctttgGTAGTCAATTACT---------CC-------------------T--AA------------------------TAATCCACTGTT-CATCTGT---T--------TT--C------AACAAAATTCATTGTAGTATTCC--TGTTCTTG---CTAAACATACA--GCTACATACTCCA--CAAAAAGA--GA--GCATTTTTTCGAAAGAA---C-GTTCC-A----T-T--T-----------------GA-TA-A---ATACGGAT-TT--TTGGATTTAAGATG----TT-AACG-GATG-C----CATACC---AGAAATA-TATT-TGTGAATTA-----------------GG-CCT--A-------GTTTTCAAATATA-------CAAC--------------TATGTATGGT-GT-TT---T---AAGCTAAATATTCAGTAACTGTAGCAAAAACATGTTGAAAATA-CA---TGTATCA------CGCTTG---CATG---CTCA-TACGAATTTTATGTC--------CTATCAT--------TATAT---TTC--AAC--CAAA-T-------TGTAAAATTCA-AATAA--AAT-GTACAAAAT-G--TTTTACA---ACTAAGAAAATTAAATACTT--AA---------------T-------------TC------------T-----TGGAA---TTCAC--CGTGC-ACAT-ATTCTTTACAAA--CACAT---GCAGTC-----AAACTT-GACACctttaacagtcctaaaaaa
gi|18 : actctactctgtacacgatatt-------------------T--AC------------------------TG--C---TGTTTTAT-AAT---TTATG-TATTT--G------AATA------------------CCATTTTCC-----CTAAGTATAGA--GCAACGCACTCTA--CAAAAGAT--GA--GCATTTCTA--ACAC---------TC----TGATAT--C-------ATG-------GAGTACATACAT-----T-TT--TTG-AATTTACATG----TTCAATAGGATGTT----CATACC---T-GAATATTATTCCGTAAATT------------------agatcacac
gi|25 : taaagaataaaaagaaaata-------------------T--AA------------------------TATTC---CATTTTATCAATAAGTGAT--T--TT--C------AATA------------------C--TGCTCGTC---CTAAACATAGG--ACTAAGGATGCT------AATATTAGACAGCATTT-TGT-ACACAA---AAGTTCC-Aatttgtca
gi|3 : gttgtagtatgacatttccgaggtctaaaattaaaaataaa------------------------TATTC---TATTTTATCAAT---TTATG-T--TTTCC------AAAA------------------A--AATTCTGG---CTGAAAATACTTTACAA-AAAC-TTA--TCAAAT-T--GC--ATAT-------ATACAATGTA-GTACC-A---AT-T--T---------G-------GAGTA-A---AT-----T-TT-ATTGGAATGAACATG----TT-AACA-GATG-T----CGTACCAAATATATTA-TATT-TGTAAATTGGTTGTCGTACATGTACATG-TAT--ATACAACAAT------ATACAATATTTTCAGC--------------AAAAT---ATTAC-TA---T---AACC--------------CTG----AAAAG----TAGAAAATATTAAACT---TTA------GT--TG---C-TG-------ATGTCA-TTAC---TT--------CTGTCAT--------T---T---CTC--AAC--TGAAGTCGGGAACTGTAAATTTTGAAATGA--AGT-GTATAAAAC-GC-TCTTACA---ACTAAGA-----------TGAAAA---------------TTATCA--------TT------------T-----TGGAT---TTTAC--CGAGC-AAATAA-TTTGTAAAAT--TACAC---GCAATC-----AAATTA-AAagtat
gi|2 : tgtaatattacttttccaagtcctagagataaataagaatataTTTTATCAAT---TACTG-T--TT----------------------------------TCTTCCTATAACTAGGGCTAGG--GC--------CTGTACAAAAAGT--GA--GAATTTTTGC-ACACA------GTTGC-AAT-------T-------A-G--------AGTA-A---AT-----T-TTTACTGGAATTAATGTGTTAAAT-AACA-TATG-CTATGTATACC---TGAAATA-TAAA-TGTAaattgcagaattgtttagaaaatttaacgaacctctccacaaaatataccattaaat
gi|24 : atttcctaatgctcctgtttttatctagaatttgataactattaatatttcttgcaaaattattttttcaaaaattatccttgttatggtcattgaaattatgccagcataaaaatattatgtatatatgcagtgcttcctagtctcaatttcacactttcagtgagcagttggcttattacaaaattctagaaaaaatggaaaaagaaaacagttctgaatattcaattgtaggtctatgaacttgactgtgtacatagtattgtaaatgcgctcttgatgatttactgttcgttagtttttacaccattttttgtagcatttctattccaagtcctaaaaataaaaagagaagataggagtatattaaa-------GAGTA-A---AG-----TGTTAATTGAAATTGACATA----TT-AACA-AATG-C----CATATC---TAAAATA-TAAT-TGTAAATT------------------GGTTGC--C-------AT------ATATA-------CTGT--------------TA--T---GT-AC-AAAGTT---AATT--------------CT-----ATAAT---CCTGAAGATATCA--------CATTGTATGG--TG---C--G---GT---TATCA-TTTC---TT--------CTGTTAT--------T---T---ttcaaccaatttaatatctgtaaagtttgaaa
gi|4 : ATG----TT-AACA-GATA-T----AATACC---TGAAATA-TATT--GT---TT------------------TG--GT--ATC-----AT------GTATA-------CAACCGTGTACAATATTTTAAGCAAAGT-ATATA---CTGTAATT--------------CTG----AATAA---GTTGAAAATATC---------TA------GG--TA---C-TC----TTA---CCA-TTTC---TTGGGTCATTTCGTTAT--------T---T---TTC--AAC--CAAA-TCGGAAACT----ATTGTGAAATAA--AAT-GTATAAAAT-TCTTTTTATT---ACTAAGA-----------TA--AAAATTAAATACGCTATT-------------CC------------T-----TGGAT---TTCAC--CGTGCAAAATAA-TCTGTACAAA--TAAAT---GCAGTC-----AAATGT-GCCAC-AAATC-ACACCCTCTAAATAATATAT-------TTTTGCAATTT
gi|16 : AAGT---AT-TC-TG---C---AACC--------------CAG----AAAAG----TTGAAAATATCA---T---TCA------TG--TGTATT-TGGGTGCTGATACCA-TTTC---TT--------TTGTTATTTTGTTAAT---T---TTC--TAC--CAAA-TTGGAAACTGTAAATTTTGAAATAA--AGT-GTATGAAAT-GC-TTTTACA---ACTAAGA-----------TG--AAAAGTAAATACCTAT-T-------------TC------------T-----TGG-T---TTCACTTC-AGC-AAAT---------CAAA--TACAT---GCAATC-----AAGTTT-GACAC--AATTCACAACCTCAAAATCATGatacaatttttttggtaacaaaattgcaaagtacatggttttggtttgctgaaagtgtattctttacactgatgtttttcttggatctatctattcaaacaaacaagatatctgctttcatatttgatattaagtagaacattccaccctcattgtgtttcaaataaatattt
gi|22 : aGT---AT-AC-TG---T---AACT--------------CTG----AAAAG----TTGAAAATATCA-------CTT------AG--TG---C-T------CAA--ACA-TTTC---TT--------CT-TAAT--------T---TCGTTTCTTAAT--CAAA-TC-GAAACTGTACAGTTTG-----A--A-----ATAAAAT-GC-TTTCACT---CCTAAGA-----------TGCAAA---------------T-------------TC------------
gi|10 : aattaatattttaagaaaacT--------T---T---TTG--AACGGCACA-TCGGAAACTG---ATTTTGAAATAA--------------T-GT-CTTTACT---ACTGAGA-----------TG--GA---------------gatacgttttcttggattcc
gi|13 : TC--AAC--CAAT-TTAATATCTGTAAAGTTTGAAACAA--AGT-G-ATAA--C-GA-TCTTACT---ACTAAGA-----------TA--AA---------------TATCAAAAACTTTTTC------------T-----TGGAT---TTGAC--CAAGC-CAATAA-TTTGTACAAATGTACTT---GCAATC-----AAATT-------TGAA---AC-------AAATCATGAATAATTTTTTTCTTCAATTTATCCAACTG-TTCT--TGA--TTACA-AAATAATGC----TATGTAAGTACTTTT-----AA--AATGTTTCAC---------------TG-TTTT-GGAAAGCTCAAAGTGTCTATACT--TTACAGTGATGCTACTCTTGAGAaatgaaatagataatttgttttaaatttatttattcattttttggcaattaaccaacttttcctggtaacaagataatgtaaagcacttattcctattactgcttcgaaaagcgtctacctaacagtgatggtatacttgaaactgtgtctattaaaggaaccaagatatctgcttccatattaggtaagtagcgaattccacacagatcttattttagttttgatgccaatcgaaagattttgtcacaaactcacaatgaa
gi|9 : AAATTTTTCCACAA--AGT-TTATAA-----T-CTCTAGT---TCAAGGA-----------GT--AA---------------T-------------TC------------TATTACCGGATAGTTTCAT--CTAGA-AAATAATCTGT-ACAAA--TATAT---GCAATC-----ATATTT-GACA-TAAA---CCA----TACA--CATGTATA------CTCTC--ATATCATAAA-TA-TTAT--CTAATTTA-ACAAACTTTTCGTGGTACGTA---ACA---AACTAGAGCAAAGT-ACTTAATGCTG----TA-CTG-TTTTTGGAAAGCAGAAG-TGTCTAG-CTACTT-CAGTGGTGTTCTTCTTGAAACT-TGATTCATT-A---CAA----C----AGACAATTTATCTGCTTCCTTATT--GTGTTAG-TA--G-AA----tatttgatcttacattt
gi|7 : TTTTTTAACTACTAGTGTTATAAAGTCGT-TTTT-CTTTTACTAATA-----------TG--AA---------------TAA-----------TCAGATACTTTTATC-----TGGAT---TTCAC--CAAGC-ATATAACTTTTTACAAA--TTCGTGCGGCAATTGACACAAATTTCACCACTCAA---AAA----TAGTATTATGTGTA------ATTTAAGATTTCACactatcctcaatgggtttta
gi|30 : atacaacattatggaatatttcaagcaagtaaataactgtaaattctgaaaaagtttgaaattatactattatttactctacttttcttttcattcgtaattttcaggccAAA---AC---CTCAAAATCATGTAT-------TTTTTCAATTACACCAACTTATTTTGGTCA--TTG-A-Attataacaattaaattatgttttattataatttaagtcttggtttatcatgtatccttgaaattctatgtactaaatcaaacaactttcctagctggtggatagaaaatgccacttttagccgtcatcatgtttacgttgaatgacttccattact
gi|23 : aaatcatgtcacaattcTT-TTCT--TGG--TTACA-AAATAATGCG----AAGTACA-ATATGTAC-TAAATAAATGT--CATA-C------------CG-CTCT-GGAATATTGAAAGTGTCTAC-TT--TA-TAGTGTTGTTATTTTTTATACT---ATCTATT-T---TTA----T----A---------TTTGCTTTCATATT--AGGTAGG-TA--G-AAAAT-CCACCCCTATTGTGCTTTAGtaaagcaatggcttggtt
gi|4 : AAAGTACATGGTTTT-GGTTTGCTGAAAGTGTATTC-TT--TA-CACTGATGTTTTTCTTGGA--T-CTATCTATTCAAACAAA----C----A-AGAT---ATCTGCTTTCATATTTGATATTAAGTA--G-AACATTCCACCCTCATTGTGTT
gi|19 : atgttaacagatataatacctgaaatatattgttttggtatcatgtatacaaccgtgtacaatattttaagcaaagtatatactgtaattctgaataagttgaaaatatctaggtactcttaccatttcttgggtcatttcgttatttttcaaccaaatcggaaactattgtgaaataaaatgtataaaattctttttattactaagataaaaattaaatacgctattccttggatttcaccgtgcaaaataatctgtacaaataaatgcagtcaaatgtgccacaaatcacaccctctaaataatatatttttgcaatttatacaatttttttggtaacaaaattgcATA-TTA-TTTT-GGTAAGCTGAAAGTGTTTAC-AC--TA-CAGTGATGTTATTCTTGAAACT-GCATATATT-A---AAG----CAAATA-AGAT---GTCGGCTTCCATATA--AAATTAG-TA--GTAATTT-CTAGCCTGATTGCGTTTtcaaataaatattt
gi|31 : ttttcttggttatgaaataacacagtgtttaatggtATA-CTG-TTCT-GGAGAACTGAAAGTGTCTAC-TT--TA-CAGCGATGTTATTTTTGACACgataatctgtacat
gi|10 : tgaagtacttaatgctTA-CTG-CTTC-GAAAAGC-------GTCTAC-CT--AA-CAGTGATGGTATACTTGAAACT-GTGTCTATT-A---AAGGAACC----A-AGAT---ATCTGCTTCCATATT--AGGTAAG-TAGCG-AATT--CCACACAGATCTTATTTTAG
gi|26 : tttttgaacggcacatcggaaactgattttgaaataatgtctttactactgagatggaaatgaaatagataatttgttttaaatttatttattcattttttggcaattaaccaacttttcctggtaacaagataatgtaaagcacttattcctatTA-TTG-TTTT-GGAAAGCCGAAAGCGTCTAC--T--TA-CAGCTACGTTATTCTTGAACCTTGCAAC---------AAA----T----A-AGAT---TTCTGCGTCCATATT--AGGTTAG-TT--G-AAATTTCCATCCTGATTGTGTTttttgatgccaatcgaaagattttgtcacaaactcacaatgaa
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): CAAATAAATTCACGCCGAAATACAATCGGGTGAACTATTTTAATTATCTCTATTTTTGCGCATATTTATAGACAAAAAGTAAATAAATTTTTGAAATCTTTTATAATTTTACTTGGTTCTTATGAGATTAAACTAAGTTTATCTAAAAATTACTCGGACTACCGTTAACCCTTTCTTGCAAAATCAATTTTTAAGAATATCTTTGTTATAGTCGAAATTTACTACACAAAATAGTTATGTATATATTGTGTTTTAAGTCATTTCTACTTTCAGTAGCAGTTGATGTATTACATAATTCCTAGAAAAATTGGAGTATGATTAACAAAGTTTCTGGATGTTGTAATTTATTCATTTATTTTGGGCTATCGGATTCTTACGTGAACTATAACATATTTAGTTAACTATGCTCCTGAGCTAATTTACTGT
Unaligned ( gi|11 ): TAATGATTTTTATTTTGTTCTTGTGAAACAGACTTATTTTATCTAAAAACATTTCTTGATTACCATTAACTTTATTTTCTTACTAAAGCATTTATATCTAAAATATATACTAGTATATTTCTTTTGCATTGAAAATATACTGATACAGAAACATCATAAATATTGTGTTTTATATCCTGAATTTCATACTTTTATTGAGCAGTTGGTTTACTACATAATTCTACAAAAACTTGGACAAGAACAAGGTTTTTGAATATTGTAATTCATTCAATATGATGACAATTGATTCGTCC
Unaligned ( gi|17 ): AAAAGCAAATAAAATCTTAAATATATTTTAAAATGCTTTTATCTTGTTCTTATTAGACAAAAATTATCCTTGTTATGGTCATTTTAGAAATATTATGTATATTAATTGTGAAATATTATGATATATTGTGTTTCATACTCTGAATTTCATACTTTCAGTGGGCAGTTGGCTTATTACGTAATTCTAGAAAAATTGTGACAAGAACAAAGTTTCTGAATATTGTAATTTATTCCTTT
Unaligned ( gi|20 ): AAATACAATGTGAAACCTATTGATGATTTTATTATGATATTAAGTCATGAGACAAACTTACTTTATCTAAAATATAACTTAATTAGCCTTAAGCTTTCTTGCAAAATCATTTCCTTAAGAATCTTAATTTGGATCATTGAAATTATACTGACACAGAAAAATTATATATATTTT
Unaligned ( gi|21 ): TCATACTTTCAGTGAGGAGTTGATTTATTACAAACTTCTACAATACATGGGACAAGATCAAAGTTCCTGGGTACTAGCAATGTATCTTCTGGGTCCTAGTATTGGTATTTTGCGTGAGTAACTAGGTATTGTATTTCCTGGGTACTATTATTTTGTAATTTTTATCCGAGGT
Unaligned ( gi|28 ): GCAAGAACACTAGTAATGTAATTCATTCACTTAATTTTAGGGCTACGGACTCTACATTGTACACAATATTGTAGTTACAATATTGTAGTTCTCGATTAGAATTAATTGC
Unaligned ( gi|29 ): TAGTTTGAATTCATACTTTCAGTGAGCAGTTGGCTTTTTACATAAATCTAGAAAAGCTGGGACACGAACAAAGGTTCTGAATATTTATATTGTAGGACTAC
Unaligned ( gi|32 ): TAAGTTTATTTATTCATTTTTGTGCAAACTCACCAACTTATCTTGGTACAAAATAAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111 11111111111111111111111111 222222222 55555555555555555555555555555 2222222 1111 111111 11111 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1111 55555555555555555555555555555555555 111 22222222 11111111 999999999999999999999999999999999999999999999999999999999999999999 1 33333333333333333333333333333333 2222222222 11111 7777777777777777777777777777777777777777777777777777777777 111 333333333333333333 11111 111111
lowQualScore : 77 999 9999999999 5 1 5 5 1 11 66 3 1 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 22 88888888888888888888888888 2 3 1 2 2 22 666 4 111111111 33333333333333333333333333333 1111111 4 6666 9999 4 4 111111 00 4 55555 1 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 66 5 7777 77 66666666666666666666666666666666666 77 000 00000000 77 77 888 88888888 66 5 33 0 4 44 3 4 66 777 888888888888888888888888888888888888888888888888888888888888888888 888 66 5 5 0 2 66 0 44444444444444444444444444444444 6666666666 44444 22 0 1 4 44 666 777 0 9999999999999999999999999999999999999999999999999999999999 1 4 1 66 5 66 888 0 000000000000000000 44444 77 5 888888 1 11
lowQualScore : .. ... .......... . . . . . .. .. . . ....................................................................................... ... .. .......................... . . . . . .. ... . ......... ............................. ....... . .... .... . . ...... .. . ..... . ................................................................................................................... .. . .... .. ................................... .. ... ........ .. .. ... ........ .. . .. . . .. . . .. ... .................................................................. ... .. . . . . .. . ................................ .......... ..... .. . . . .. ... ... . .......................................................... . . . .. . .. ... . .................. ..... .. . ...... . ..
lowQualScore : 99 111 8888888888 0 4 7 7 7 77 99 4 0 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 000 55 11111111111111111111111111 4 9 0 3 4 22 444 0 777777777 33333333333333333333333333333 4444444 4 9999 4444 4 4 000000 99 4 66666 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 99 0 9999 99 44444444444444444444444444444444444 44 000 77777777 99 99 888 11111111 99 0 66 1 0 77 2 0 33 000 999999999999999999999999999999999999999999999999999999999999999999 888 99 4 0 0 8 99 1 44444444444444444444444444444444 8888888888 00000 99 7 0 4 66 222 888 8 6666666666666666666666666666666666666666666666666666666666 9 4 0 11 4 11 999 1 000000000000000000 33333 99 7 777777 7 33
consensus : ATACACAATAT--TGTA--ATTGTGCTCCTGA--T-AAT---TTACTG-TTCGT-C-AGTTTTCTACAAAACTCTTTGTAGT--ATTACTNT-----T------CC-------------------T--------AC------------------------TATTC--------------TATTTT---ATCAATTAAT--G--T--TT--C-AAT-----A---CTNTTCTTNCTAAANATAGGGCNACGGACTCTACAAAAAGTGAGCATTTT---TGC-ACAC-AA------AGTTCC-AG--------T-ATT---TAG-------GAGTAAA-T-----T-TT--A-TTGGAATTAACATGT----T-AACA-GATG-C----CATACCTGAAATA-TATT-----TGTAAATTGG---------------GTGT-----A-----TA----T------A----TATA---------C--------A---------GCNA-----AGTA-T-----A--CTG---------TAACTCTG--AA-AA----GTTGAAAATAT--CA---T---T-CA----------GG--TGC-T-GT--ATAC-CATTTC---TT--------CT--GTT--ATT---TT--------TCAAC--C-AAATCGGAAACTGTAAATTTTGAAATAA-AGTGT-ATAAAAT-GC-TTTTACT---ACTAAGA-----------TG--AA---------------T-------------TC------------T-----TGGAT---TTCAC--CGAGC-AAATAA-TCTGTACAAAT--ACATGCAATCAAATTTGACACTAA----A---ACA--CT-C--AAA------ATCATGTAT--A------TTTTT---CAATTTNACCAACTTTTCT-TGGTT--ACAAAA---TAATGC-G-----TA-GTA-AAC--A-T-T-A-TA--A--AAATG--T----TAC-------ATACTG-TTTTGGAAAGCTGAAAGTGTC--TACCT--TACAGTGATGTTATTCTTGAAACT-GCATCTATT-A---AAA----C----AAGA-----TATCTGCTTCCATATT--AGGTT-AGTAG-AA-ATTCCACCCTGATTGTGTTTTAG
Reference ( family-4141 ) : ATACACAATAT--TGTA--ATTGTGCTCCTGA--T-AAT---TTACTG-TTCGT-C-AGTTTTCTACAAAACTCTTTGTAGT--ATTACTNT-----T------CC-------------------T--------AC------------------------TATTC--------------TATTTT---ATCAATTAAT--G--T--TT--C-AAT-----A---CTNTTCTTGCTAAANATAGGGCNACGGACTCTACAAAAAGTGAGCATTTT---TGC-ACAC-AA------AGTTCC-AG--------T-ATT---TAG-------GAGTAAA-T-----T-TT--A-TTGGAATTAACATGT----T-AACA-GATG-C----CATACCTGAAATA-TATT-----TGTAAATTGG---------------GTGT-----A-----TA----T------A----TATA---------C--------A---------GCTA-----AGTG-T-----A--CTA---------TAACCCTG--AA-AA----GTTGAAAATAT--CA---T---T-CA----------GG--TGC-T-GTCAATAC-CATTTC---TT--------CT--GTT--ATT---TT--------TCAAC--C-AAATCGGAAACTGTAAATTTTGAAATAA-AGTGT-ATAAAAT-GC-TTTTACT---ACTAAGA-----------TG--AA---------------T-------------TC------------T-----TGGAT---TTCAC--CGAGC-AAATAA-TTTNTACAAAT--ACATGCAATCAAATTTGACACTAA----A---ACA--CT-C--AAA------ATCATGTAT--A------TTTTN---CAATTTCACCAACTNTTCT-TNATT--ACAAAA---TAATGC-G-----TACGTA-GAC--A-T-T-A-TA--A--AAATG--T--CATAC-------ATACTG-TTTTGGAAAGCTGAAAGTGTC--TACCT--TACAGTGATGTTATTCTTGAAACT-GCATCTATT-A---AAA----C----AAGA-----TATCTGCTTCCATATT--AGGTT-AGTAG-AA-NTTCCACCCTGATTGTGTTTTAG
gi|1 : ATGCACAATAT--TGTACCATTGTGCTCCTGA--T-A-T---TTAATG-TTCAT-C-AGTTTTCTACAAAACTCTTGGTAGT--ATTACTAT-----T------CC-------------------T--------AC------------------------TATTC--------------TGTTTC---GTCAGTTGAT--G--T--TT--C-AAC-----A---CTTTTCTTACTAAGAATAGGACAACAAACACTGCGAAATGTGAACATTTC---TGC-ACAC-AA------AGTTCC-AG--------TGATT---TAG-------GAGTAAA-T-----T-TTC-A-TTGAAATTAACATGA----T-AACA-GATG-T----CATACCTGGAATA-TATT-----TGTAAATT-T---------------GTGT-----A------A----T------A----TACA---------C--------A---------ACTA-----AGTG-T-----A--TTA---------CAACCCTG--AA-AAG---GTTGAAAATAT--CA---T---C-CA----------AG--TGC-TGGTCAATGC-CATTTC---TT--------CT--GTA--ATT---TT--------TCAAC--C-AAATCAGAAGTTGTAAATTTTGTAATAA-AGTTT-ATAAAAT-GC-TTTTACT---ACTAAGA-----------TG--AA---------------T-------------TC------------T-----TGGAT---TTCAC--CAAAC-AAATGATTTTTTACAAAT--ACATGCAATTAAATTTAACACTAA----A---ACA--CC-CTTAAA------ATCATGTAT--A------TTTTT---CAATCTCACCAGCTTTTCT-CCATT--A-AAAA---TGATGC-GTGTTATATATA-TAC--A-TGTAA-TA--A--AAATG--TTACATATAATAAAAATAATG-TTTTGGAAAGCTGAAAATATC--TACCT--TTCAGTGATGTTATTCTTGAAACT-GTATCTATT-A---AAA----C----AAGA-----GGTCTGCTTTCATATT--AGGTT-AATAG-AA----CCAGCCAGATTCTGTTCTAG
gi|10 : TT---TT--------TGAACGGC-ACATCGGAAACTG---ATTTTGAAATAA-------------T-GT-CTTTACT---ACTGAGA-----------TG--GA---------------
gi|10 : T-T--AAA------TTTATTTATTCA------TTTTTTGGCAATT-AACCAACTTTTCC-TGGTA--ACAAGA---TAATG--------TA---A-AGC--ACT-T-A-T-------------T--CCTAT--------TACTG-CTTCGAAAAGC-------GTC--TACCT--AACAGTGATGGTATACTTGAAACT-GTGTCTATT-A---AAGGAACC----AAGA-----TATCTGCTTCCATATT--AGGTA-AGTAGCGA-ATTCCACACAGATCTTATTTTAGaatgaaatagataatttgttttaaatttatttattcattttttggcaattaaccaacttttcctggtaacaagataatgtaaagcacttattcctattactgcttcgaaaagcgtctacctaacagtgatggtatacttgaaactgtgtctattaaaggaaccaagatatctgcttccatattaggtaagtagcgaattccacacagatcttattttagttttgatgccaatcgaaagattttgtcacaaactcacaatgaa
gi|12 : tttttgaacggcacatcggaaactgattttgaaataatgtctttactactgagatggaaatgaaatagataatttgttTACACAATAT--GGTA---TTGTGCTTCTGA--T-AAT---TTACTG-TTCAT-C-AGTTTTCTACTAAATT--TTGTAGT--ATTACTTT-----TTCAAGTCC-------------------T--------AA------------------------AAATGAAAAAAAAAGAAAATATTTTGTCATCAATTAAT--GC-T--TT--T-GAT-----A---CTTTTCTAACTAAAATTAGGGCCACAGACACTACAACAAGTGAGCATTGT---TGC-ACAC-AA------AGTTCCAAG--------T-GTCTGATAGTCATACTAAGTTAA-T-----T-TC--A-TTGGAATTAACATGT----T-AACA-AATG-C----CATGCCT-------TATT-----TACAAttttgatgccaatcgaaagattttgtcacaaactcacaatgaa
gi|13 : acggatttt--------TCAAC--C-AATTTAATATCTGTAAAGTTTGAAACAA-AGTG--ATAA--C-GA-TCTTACT---ACTAAGA-----------TA--AA---------------TATCAAAAACTTTTTC------------T-----TGGAT---TTGAC--CAAGC-CAATAA-TTTGTACAAATGTACTTGCAATCAAATTTGA----------A---ACA----------A------ATCATGAAT--AATTTTTTTCTT---CAATTTATCCAACTGTTCT-TGATT--ACAAAA---TAATGC-------TATGTA-AGT--A-C-T-T-TT--A--AAATG--T----TTC---------ACTG-TTTTGGAAAGCTCAAAGTGTCTATACTT--TACAGTGATGCTACTCTTGAGAccatatacaata
gi|14 : ATACACAATAT--TGTG--ATTGTGCTCCTGA--TCAATACATTACTG-TTTGT-C-AGCTTTCTGCAAAGCTCTTTGTAG--------TGC-----T------CC-------------------TAAAGATAAACATGAAAATA---------------TATTC--------------TATTTT---ATGTAT--AT---------------AT-----A---CTTTTCTTGCTAAAAATAAGGCTACAAACTCGACAAAAAGCAAGTATATT---Ttatttgatcttacattt
gi|15 : atgaaatgttagaatttaaatggaagacaaatatacacatgtacttattcaaaatttctattttgtctatatctgaaaatgctacgctgtttgtTACACAACAT--TGTA--TATATACTCCTGA--T-AAT---TTACTG-TTCAT-C-TGTTTTCTACAAAACT-TTTGGAAT--ATTACTTT-----T------CCAAACCCTAAACAAAGAAAAT--------AC------------------------TACTC--------------TATTCT---ATCAATCAAT--A--T--TT--CAAATTAAAAA---CTTTTCTCAGTTAATAAAGAAAGACGGAC-CTATAAAAA-TGAGCATTTT---TGC-ACAT-TA------AATTCC-AAT-------T-ATT---TA
gi|16 : aagtttctgaattatttatgttttaggaactctgcattcgA-----AGTA-T-----T--CTG---------CAACCCAG--AA-AA----GTTGAAAATAT--CA---T---T-CATGTGTATTTGGG--TGC-T-G---ATAC-CATTTC---TT--------TT--GTT--ATT---TTGTTAATTTTCTAC--C-AAATTGGAAACTGTAAATTTTGAAATAA-AGTGT-ATGAAAT-GC-TTTTACA---ACTAAGA-----------TG--AAAAGTAAATACCTAT-T-------------TC------------T-----TGG-T---TTCACTTC-AGC-AAAT---------CAAAT--ACATGCAATCAAGTTTGACAC--A----ATTCACAACCT-C--AAA------ATCATGata
gi|18 : a-------------------T--------AC------------------------TG--C--------------TGTTTT---AT-AATTTAT--G--TATTT--G-AAT-----A---CCATTTTCCCTAAGTATAGAGCAACGCACTCTACAAAAGATGAGCATTTC---TA--ACAC------------TCT-GA--------T-ATC---ATG-------GAGTACA-TACA--T-TT----TTTGAATTTACATGT----TCAATAGGATGTT----CATACCTG-AATATTATTC----CGTAAATT
gi|19 : taaagaataaaaagaaaataTTTTCT-TGGTT--ATGAAA---TAACACAG-----T--GT---------T-T-A----------ATG--------GT-------ATATTA-TTTTGGTAAGCTGAAAGTGTT--TACAC--TACAGTGATGTTATTCTTGAAACT-GCATATATT-A---AAG----CAAATAAGA-----TGTCGGCTTCCATATA--AAATT-AGTAGTAA-TTTCTAGCCTGATTGCGTTTTatttgtca
gi|2 : TACATAGTAT--TGTA--AATGCGCTCTTGA--T-GAT---TTACTG-TTCGT-T-AGTTTT-TACACCATTTTTTGTAGC--ATTTCTAT-----T------CC-------------------gataatctgtacat
gi|2 : atttcctaatgctcctgtttttatctagaatttgataactattaatatttcttgcaaaattattttttcaaaaattatccttgttatggtcattgaaattatgccagcataaaaatattatgtatatatgcagtgcttcctagtctcaatttcacactttcagtgagcagttggcttattacaaaattctagaaaaaatggaaaaagaaaacagttctgaatattcaattgtaggtctatgaacttgactgtg------------------------TATTA--------------AATTTT---ATCAATTACT--G--T--TT--------------------TCTTCCTATAACTAGGGCTAGGGCCTGTACAAAAAGTGAGAATTTT---TGC-ACAC---------AGTTGC-A-----------ATT-----A-------GAGTAAATT-----T-TT--A-CTGGAATTAATGTGTTAAAT-AACA-TATG-CTATGTATACCTGAAATA-TAAA-----TGTAaagtcctaaaaataaaaagagaagataggagtatattaaattttatcaattactgttttcttcctataactagggctagggcctgtacaaaaagtgagaatttttgcacacagttgcaattagagtaaatttttactggaattaatgtgttaaataacatatgctatgtatacctgaaatataaatgtattcaaccaatttaatatctgtaaagtttgaaa
gi|22 : atttcctaatgctcctgtttttatctagaatttgataactattaatatttcttgcaaaattattttttcaaaaattatccttgttatggtcattgaaattatgccagcataaaaatattatgtatatatgcagtgcttcctagtctcaatttcacactttcagtgagcagttggcttattacaaaattctagaaaaaatggaaaaagaaaacagttctgaatattcaattgtaggtctatgaacttgactgtgtacatagtattgtaaatgcgctcttgatgatttactgttcgttagtttttacaccattttttgtagcatttctattccaagtcctaaaaataaaaagagaagataggagtaGTA-T-----A--CTG---------TAACTCTG--AA-AA----GTTGAAAATAT--CA---C---T-TA-----------G--TGC----TCAA-A--CATTTC---TT--------CTTAATTTCGTT---TC--------TTAAT--C-AAATC-GAAACTGTACAGTTTGAA-----------ATAAAAT-GC-TTTCACT---CCTAAGA-----------TGCAAA---------------T-------------TC------------ttcaaccaatttaatatctgtaaagtttgaaa
gi|23 : aattaatattttaagaaaacTTTTCT-TGGTT--ACAAAA---TAATGC-G------AAGTACAAT--A-TGT-ACTA--AATAAATG--T------C-------ATACCG-CTCTGGAATATTGAAAGTGTC--TACTT--TATAGTGTTGTTATTTTTTATACT---ATCTATT-----------------TTTA-----TATTTGCTTTCATATT--AGGTA-GGTAG-AA-AATCCACCCCTATTGTGCTTTAGgatacgttttcttggattcc
gi|24 : -------GAGTAAA-G-----TGTT--AATTGAAATTGACATAT----T-AACA-AATG-C----CATATCTAAAATA-TAAT-----TGTAAATTGG---------------TTGC-----------CA----T------A----TATA---------C--------T---------GTTA-------TG-T-----A--CAAAGT------TAATTCTA--TA-AT----CCTGAAGATATCACA---T---TGTAT---------GG--TGC-G-GT---TAT-CATTTC---TT--------CT--GTT--ATT---T
gi|25 : -------------------T--------AA------------------------TATTC--------------CATTTT---ATCAATAAGT--GATT--TT--C-AAT-----A---CTGCTCGTCCTAAACATAGGACTAAGGATGCTAATATTAGACAGCA-TTT---TGT-ACACAAA------AGTTCCAAG--------T-AT
gi|26 : gttgtagtatgacatttccgaggtctaaaattaaaaataaaTATTG-TTTTGGAAAGCCGAAAGCGTC--TAC-T--TACAGCTACGTTATTCTTGAACCTTGCAAC---------AAA----T----AAGA-----TTTCTGCGTCCATATT--AGGTT-AGTTGAAA-TTTCCATCCTGATTGTGTTTAAG
gi|27 : TACACAATATATTGTA--ATTATGTTTCTGA--T-GTT---TCACTGCTTCATACGAGTTTTC-AT-AAACTC-TTATAGT--ATT-CTTTAACAGT------CC-------------------T--------Actgatagatattatatctacacatat
gi|28 : tcatttgattgtggagctacgggttctgctttgTAGGGCTACGGACTCTACA--------------T---TGT-ACAC-AATATTGTAGTTAC-AA--------T-ATT---------------GT-AG-T-----T-CTCGA-TTAGAATTAAaaaaa
gi|3 : gcaagaacactagtaatgtaattcattcacttaattt------------------------TATTC--------------TATTTT---ATCAATTTAT--G--T--TTTCC-AAA-----A---AAATTCTGGCTGAAAATA----------CTTTACAAAAACTTATCAAATTGCATAT-ATAC-AATGT---AGTACC-A-----------ATT---T-G-------GAGTAAA-T-----T-TT--A-TTGGAATGAACATGT----T-AACA-GATG-T----CGTACC--AAATA-TATTATATTTGTAAATTGGTTGTCGTACATGTACATGT-----A-----TA----TACAACAA----TATACAATATTTTC--------A---------GCAA-----AATATT-----A--CTA---------TAACCCTG--AA-AA----GTAGAAAATAT--TAAACT---T-TA----------GT--TGC-T-G---ATGT-CATTAC---TT--------CT--GTC--ATT---TC--------TCAAC--TGAAGTCGGGAACTGTAAATTTTGAAATGA-AGTGT-ATAAAAC-GC-TCTTACA---ACTAAGA-----------TGAAAA---------------TTATCA--------TT------------T-----TGGAT---TTTAC--CGAGC-AAATAA-TTTGTAAAATT--ACACGCAATCAAAT-------TAA----A---A-A--TTGC--AGA------ATTGTTTAG--A--------------AAATTTAACGAACCTCTC------C--ACAAAA---TAttgc
gi|30 : tgtaatattacttttccaagtcctagagataaataagaatataAA----A---AC---CT-C--AAA------ATCATGTAT---------TTTTT---CAATTACACCAACTTATTT-TGGTC--ATTGAA---TAAAGC-taccattaaat
gi|31 : aaatcatgtcacaattc-------ATACTG-TTCTGGAGAACTGAAAGTGTC--TACTT--TACAGCGATGTTATTTTTGACACaatggcttggtt
gi|4 : tgaagtacttaatgctATGT----T-AACA-GATA-T----AATACCTGAAATA-TATT------GTT--TTGGTATC-----------ATGT-----A-----TA----C------AACCGTGTA---------C--------AATATTTTAAGCAA-----AGTA-T-----ATACTG---------TAATTCTG--AATAA----GTTGAAAATAT--C----------TA----------GG--TAC-T-CT---TAC-CATTTC---TTGGGTCATTTC--GTT--ATT---TT--------TCAAC--C-AAATCGGAAACT----ATTGTGAAATAA-AATGT-ATAAAAT-TCTTTTTATT---ACTAAGA-----------TA--AAAATTAAATACGCTATT-------------CC------------T-----TGGAT---TTCAC--CGTGCAAAATAA-TCTGTACAAAT--AAATGCAGTCAAATGTGCCAC-AA----ATC-ACACCCT-C--TAA------ATAATATAT---------TTTTG---CAATTTATACAA-TTTTTT-TGGTA--ACAAAA---T--TGC----------------------------A--A--A----------GTAC-------ATG--G-TTTTGGTTTGCTGAAAGTGTA--TTCTT--TACACTGATGTTTTTCTTGGATCT---ATCTATTCAAACAAA----C----AAGA-----TATCTGCTTTCATATTTGATATTAAGTAG-AACATTCCACCCTCATTGTGTTTCA
gi|5 : TTGTAGTCAATTACTCC-----TAATAA-TC-------------------C--------AC------------------------TGTTCATC-----------TGTTTTC--AACAA--AATTCA--T--TG--T-AGT-----ATTCCTGTTCTTGCTAAACATACAGCTACATACTCCACAAAAAGAGAGCATTTT---TTCGAAAG-AA------CGTTCC-A------------TT---T---------GA-TAAA-TACGGAT-TT----TTGGATTTAAGATGT----T-AACG-GATG-C----CATACCAGAAATA-TATT-----TGTGAATTAG---------------GCCT-----AGTTTTCA----A------A----TATA---------C--------A---------ACTATGTATGGTG-TTTTAAG--CTAAATATTCAGTAACTGTAGCAA-AAACATGTTGAAAATA---CA---TGTAT-CA----------CGCTTGCAT-GCTCATACGAATTTTATGTC--------CT--ATC--ATTATATT--------TCAAC--C-AAAT-------TGTAAAATTC-AAATAA-AATGT-ACAAAAT-G--TTTTACA---ACTAAGAAAATTAAATACTT--AA---------------T-------------TC------------T-----TGGAA---TTCAC--CGTGC-ACATAT-TCTTTACAAAC--ACATGCAGTCAAACTTGACACaataaatattt
gi|6 : actctactctgtacacgataTACACAATAT--TGTA--GTTAGG-----------------TTACTG-TTCAT-C-AGATTTCTAAAAAATTCATTGCAAT--ATTACATT-----T------TC-------------------T--------ACCACTAAAAATAAATAAGAGAATAATACTC--------------TATTTT---ATCAATTAAT--G--T--TTT-C-AAT-----A---CTGCTCTTAATAAACATAGGGCAATGGACTCTACCAAAAGAGAGCATTTT---TGC-ATAC-AA------CGTTCA-CGTTACCTTAT-ATC---GAG-------GAGTAAATT-----T-TT--A-TTGGAATTAACATGT----A-AACA-GATG-C----CATATCTGAAATA-CATT-----TGTAAATTGG---------------GTGTCAAAGA-----TACATCC------A----TATA---------CAATATTTAA---------GCAA-----AGTA-T-----A--CTG---------TAACTTGG--AA-agatcacac
gi|7 : tatgttttatagtttgaatttcatactttcattctagaaaaactgggacaaaaacaaagtttctgaatattataagtcatttaattttggagctacggactctactgtgtatTTTTTAACTACTAGTGTTATAAAGTCGT-TTTT-CTTTTACTAATA-----------TG--AA---------------TAA-----------TCAGATACTTTTATC-----TGGAT---TTCAC--CAAGC-ATATAACTTTTTACAAAT--TCGTGCGG-CAA--TTGACACAAATTTCA---CCA--CT-C--AAAAATAGTATTATGTGT--A------ATTTA---AGATTTCAC
gi|8 : atacaacattatggaatatttcaagcaagtaaataactgtaaattctgaaaaagtttgaaattatactattatttactctacttttcttttcattcgtaattttcaggcctTA--ACTATGCTCCTGAGCT-AAT---TTACTG-Tttataacaattaaattatgttttattataatttaagtcttggtttatcatgtatccttgaaattctatgtactaaatcaaacaactttcctagctggtggatagaaaatgccacttttagccgtcatcatgtttacgttgaatgacttccattact
gi|9 : caaataaattcacgccgaaatacaatcgggtgaactattttaattatctctatttttgcgcatatttatagacaaaaagtaaataaatttttgaaatcttttataattttacttggttcttatgagattaaactaagtttatctaaaaattactcggactaccgttaaccctttcttgcaaaatcaatttttaagaatatctttgttatagtcgaaatttactacacaaaatagttatgtatatattgtgttttaagtcatttctactttcagtagcagttgatgtattacataattcctagaaaaattggagtatgattaacaaagtttctggatgttgtaatttattcatttattttgggctatcggattcttacgtgaactataacatatttagtAAATTTTTCCACAA-AGTTT-ATAA-----T-CTCTAGT---TCAAGGA-----------GT--AA---------------T-------------TC------------TATTACCGGATAGTTTCAT--CTAGA-AAATAA-TCTGTACAAAT--ATATGCAATCATATTTGACA-TAA----A---CCA--TA-C--A----------CATGTAT--A------CTCTC-----ATATCA-TAAATATTATCTAATTTAACAAACTTTTCGTG--G-----TACGTA--ACAAA-C-T-A-GAGCA--AAGTACTT--AATGCT------GTACTGTTTTTGGAAAGCAG-AAGTGTC--TAGCTACTTCAGTGGTGTTCTTCTTGAAACT-TGATTCATT-A---CAA----C-----AGACAATTTATCTGCTTCCTTATT--GTGTT-AGTAG-AA-A--CTATCCTCAATGGGTTTTA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TAATGATTTTTATTTTGTTCTTGTGAAACAGACTTATTTTATCTAAAAACATTTCTTGATTACCATTAACTTTATTTTCTTACTAAAGCATTTATATCTAAAATATATACTAGTATATTTCTTTTGCATTGAAAATATACTGATACAGAAACATCATAAATATTGTGTTTTATATCCTGAATTTCATACTTTTATTGAGCAGTTGGTTTACTACATAATTCTACAAAAACTTGGACAAGAACAAGGTTTTTGAATATTGTAATTCATTCAATATGATGACAATTGATTCGTCC
Unaligned ( gi|17 ): AAAAGCAAATAAAATCTTAAATATATTTTAAAATGCTTTTATCTTGTTCTTATTAGACAAAAATTATCCTTGTTATGGTCATTTTAGAAATATTATGTATATTAATTGTGAAATATTATGATATATTGTGTTTCATACTCTGAATTTCATACTTTCAGTGGGCAGTTGGCTTATTACGTAATTCTAGAAAAATTGTGACAAGAACAAAGTTTCTGAATATTGTAATTTATTCCTTT
Unaligned ( gi|20 ): AAATACAATGTGAAACCTATTGATGATTTTATTATGATATTAAGTCATGAGACAAACTTACTTTATCTAAAATATAACTTAATTAGCCTTAAGCTTTCTTGCAAAATCATTTCCTTAAGAATCTTAATTTGGATCATTGAAATTATACTGACACAGAAAAATTATATATATTTT
Unaligned ( gi|21 ): TCATACTTTCAGTGAGGAGTTGATTTATTACAAACTTCTACAATACATGGGACAAGATCAAAGTTCCTGGGTACTAGCAATGTATCTTCTGGGTCCTAGTATTGGTATTTTGCGTGAGTAACTAGGTATTGTATTTCCTGGGTACTATTATTTTGTAATTTTTATCCGAGGT
Unaligned ( gi|29 ): TAGTTTGAATTCATACTTTCAGTGAGCAGTTGGCTTTTTACATAAATCTAGAAAAGCTGGGACACGAACAAAGGTTCTGAATATTTATATTGTAGGACTAC
Unaligned ( gi|32 ): TAAGTTTATTTATTCATTTTTGTGCAAACTCACCAACTTATCTTGGTACAAAATAAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111
lowQualScore : 11 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111 22222222222222222222222222 222222222 55555555555555555555555555555 2222222 1111 111111 11111 4444444444444444444444444444444444444444444444444444444444444444444 2222222222222 1111111 55555555555555555555555555555555555555555 111111111111111111 11111111 11111111111 9999999999999999999999999999999999999999999999999 55555555555555555555555555 111111 22222222222222222 2222222222222222222222222222222222222222222222222222 111 22222222222222222 11111 1 1111
lowQualScore : 77 999 9999999999 5 1 5 5 1 11 66 3 1 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 22 00000000000000000000000000 2 1 1 2 2 22 666 4 111111111 33333333333333333333333333333 1111111 4 6666 9999 4 4 111111 00 4 55555 3333333333333333333333333333333333333333333333333333333333333333333 1 4 66 4 9999 4 4444444444444 9999 4 7777777 66 66 55555555555555555555555555555555555555555 888 999999999999999999 777 66666666 66 4 66 0 0 22 0 4 44 3 4 66 777 99999999999 55 8888888888888888888888888888888888888888888888888 888 66 5 5 5 1 2 5 66 99999999999999999999999999 4 66 222222 0 88888888888888888 1 777 4 2 9999999999999999999999999999999999999999999999999999 4 1 66 5 66 888 0 88888888888888888 1 44444 77 5 1 8888 1 11
lowQualScore : .. ... .......... . . . . . .. .. . . ....................................................................................... ... .. .......................... . . . . . .. ... . ......... ............................. ....... . .... .... . . ...... .. . ..... ................................................................... . . .. . .... . ............. .... . ....... .. .. ......................................... ... .................. ... ........ .. . .. . . .. . . .. . . .. ... ........... .. ................................................. ... .. . . . . . . .. .......................... . .. ...... . ................. . ... . . .................................................... . . .. . .. ... . ................. . ..... .. . . .... . ..
lowQualScore : 99 111 8888888888 0 4 7 7 7 77 99 4 0 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 000 55 55555555555555555555555555 4 0 0 3 4 22 444 0 777777777 33333333333333333333333333333 4444444 4 9999 4444 4 4 000000 99 4 66666 2222222222222222222222222222222222222222222222222222222222222222222 0 4 11 4 4444 4 4444444444444 4444 4 6666666 99 99 88888888888888888888888888888888888888888 888 555555555555555555 888 11111111 11 4 66 9 9 99 6 0 77 2 0 33 000 00000000000 55 8888888888888888888888888888888888888888888888888 888 99 4 0 0 1 5 0 99 99999999999999999999999999 4 11 888888 7 22222222222222222 0 000 0 2 8888888888888888888888888888888888888888888888888888 4 0 11 4 11 999 1 33333333333333333 7 33333 99 7 4 3333 7 33
consensus : ATACACAATAT--TGTA--ATTGTGCTCCTGA--T-AAT---TTACTG-TTCGT-C-AGTTTTCTACAAAACTCTTTGTAGT--ATTACTNT-----T------CC-------------------T--------AC------------------------TATTC--------------TATTTT---ATCAATTAAT--G--T--TT--C-AAT-----A---CTNTTCTTNCTAAANATAGGGCNACGGACTCTACAAAAAGTGAGCATTTT---TGC-ACAC-AA------AGTTCC-AG--------T-ATT---TAG-------GAGTAAA-T-----T-TT--A-TTGGAATTAACATGT----T-AACA-GATG-C----CATACCTGAAATA-TATT-----TGTAAATTGG---------------GTGT-----A-----TA----TA------TATAC--------A---------GCNAAGTAT-A--CTG-T----AA-CT-------------CTG----AA-AA----G--TTGAAA--ATAT--CA---T---T-CA----------GG--TGC-TG--T--ATAC-CATTTC---TT--------CT--GTT---ATT---TT--------TCAAC--CAAA-TCGGAAACTGTAAATTTTGAAATAA-AGTGT-ATAAAAT-GC-TTTTACT---ACTAAGA-----------TG--AA---------------T-------------TC------------T-----TGGAT---TTCAC--CGAGC-AAATAA-TCTGT-ACAAAT--ACATGCAATCAAATTTGACAC-AA----A------ACA--------CT-C--AAA------ATCATGTAT--A------TTTTT---CAATTTAACCAACTTTTCTTGGT---TA-CAAAATAATGCGNA------GTA-AGCA-T-TA-TAAA--AATGCTACATAC-----------TGTTTT-GGAAAGCTGAAAGTGTC--TACCT--TACAGTGATGTTATTCTTGAAACT-GCATCTATT-A---AAA----C----AAGA-----TATCTGCTTCCATATT--AGGTT-AGTAG-AA-A-TTCCACCCTGATTGTGTTTTAG
Reference ( family-4141 ) : ATACACAATAT--TGTA--ATTGTGCTCCTGA--T-AAT---TTACTG-TTCGT-C-AGTTTTCTACAAAACTCTTTGTAGT--ATTACTNT-----T------CC-------------------T--------AC------------------------TATTC--------------TATTTT---ATCAATTAAT--G--T--TT--C-AAT-----A---CTNTTCTTNCTAAANATAGGGCNACGGACTCTACAAAAAGTGAGCATTTT---TGC-ACAC-AA------AGTTCC-AG--------T-ATT---TAG-------GAGTAAA-T-----T-TT--A-TTGGAATTAACATGT----T-AACA-GATG-C----CATACCTGAAATA-TATT-----TGTAAATTGG---------------GTGT-----A-----TA----TA------TATAC--------A---------GCNAAGTAT-A--CTG-T----AA-CT-------------CTG----AA-AA----G--TTGAAA--ATAT--CA---T---T-CA----------GG--TGC-TG--T--ATAC-CATTTC---TT--------CT--GTT---ATT---TT--------TCAAC--CAAA-TCGGAAACTGTAAATTTTGAAATAA-AGTGT-ATAAAAT-GC-TTTTACT---ACTAAGA-----------TG--AA---------------T-------------TC------------T-----TGGAT---TTCAC--CGAGC-AAATAA-TCTGT-ACAAAT--ACATGCAATCAAATTTGACACTAA----A------ACA--------CT-C--AAA------ATCATGTAT--A------TTTTT---CAATTTNACCAACTTTTCTTGGT---TA-CAAAATAATGCGTA------GTA-AACA-T-TA-TAAA--AATGTTACATAC-----------TGTTTT-GGAAAGCTGAAAGTGTC--TACCT--TACAGTGATGTTATTCTTGAAACT-GCATCTATT-A---AAA----C----AAGA-----TATCTGCTTCCATATT--AGGTT-AGTAG-AA-A-TTCCACCCTGATTGTGTTTTAG
gi|1 : ATGCACAATAT--TGTACCATTGTGCTCCTGA--T-A-T---TTAATG-TTCAT-C-AGTTTTCTACAAAACTCTTGGTAGT--ATTACTAT-----T------CC-------------------T--------AC------------------------TATTC--------------TGTTTC---GTCAGTTGAT--G--T--TT--C-AAC-----A---CTTTTCTTACTAAGAATAGGACAACAAACACTGCGAAATGTGAACATTTC---TGC-ACAC-AA------AGTTCC-AG--------TGATT---TAG-------GAGTAAA-T-----T-TTC-A-TTGAAATTAACATGA----T-AACA-GATG-T----CATACCTGGAATA-TATT-----TGTAAATTTG----------------TGT-----A------A----TA------TACAC--------A---------ACTAAGTGT-A--TTA-C----AA-CC-------------CTG----AA-AA----GG-TTGAAA--ATAT--CA---T---C-CA----------AG--TGC-TGG-TCAATGC-CATTTC---TT--------CT--GTA---ATT---TT--------TCAAC--CAAA-TCAGAAGTTGTAAATTTTGTAATAA-AGTTT-ATAAAAT-GC-TTTTACT---ACTAAGA-----------TG--AA---------------T-------------TC------------T-----TGGAT---TTCAC--CAAAC-AAATGA-TTTTTTACAAAT--ACATGCAATTAAATTTAACACTAA----A------ACA--------CC-CTTAAA------ATCATGTAT--A------TTTTT---CAATCTCACCAGCTTTTCTCCAT---TA--AAAATGATGCGTGTTATATATA-TACA-TGTAATAAA--AATGTTACATATAATAAAAATAATGTTTT-GGAAAGCTGAAAATATC--TACCT--TTCAGTGATGTTATTCTTGAAACT-GTATCTATT-A---AAA----C----AAGA-----GGTCTGCTTTCATATT--AGGTT-AATAG-AA-----CCAGCCAGATTCTGTTCTAG
gi|10 : TT---TT--------TGAACGGCACA-TCGGAAACTG---ATTTTGAAATAA-------------T-GT-CTTTACT---ACTGAGA-----------TG--GA---------------
gi|10 : T-T--AAA------TTTATTTATTCA------TTTTTTGGCAATT-AACCAACTTTTCCTGGT---AA-CAAGATAATG--TA--------A-AGCACT-TA-T-------TCCTAT-TAC-----------TGCTTC-GAAAAGC-------GTC--TACCT--AACAGTGATGGTATACTTGAAACT-GTGTCTATT-A---AAGGAACC----AAGA-----TATCTGCTTCCATATT--AGGTA-AGTAGCGA-A-TTCCACACAGATCTTATTTTAGaatgaaatagataatttgttttaaatttatttattcattttttggcaattaaccaacttttcctggtaacaagataatgtaaagcacttattcctattactgcttcgaaaagcgtctacctaacagtgatggtatacttgaaactgtgtctattaaaggaaccaagatatctgcttccatattaggtaagtagcgaattccacacagatcttattttagttttgatgccaatcgaaagattttgtcacaaactcacaatgaa
gi|12 : tttttgaacggcacatcggaaactgattttgaaataatgtctttactactgagatggaaatgaaatagataatttgttTACACAATAT--GGTA---TTGTGCTTCTGA--T-AAT---TTACTG-TTCAT-C-AGTTTTCTACTAAATT--TTGTAGT--ATTACTTT-----TTCAAGTCC-------------------T--------AA------------------------AAATGAAAAAAAAAGAAAATATTTTGTCATCAATTAAT--GC-T--TT--T-GAT-----A---CTTTTCTAACTAAAATTAGGGCCACAGACACTACAACAAGTGAGCATTGT---TGC-ACAC-AA------AGTTCCAAG--------T-GTCTGATAGTCATACTAAGTTAA-T-----T-TC--A-TTGGAATTAACATGT----T-AACA-AATG-C----CATGCCT-------TATT-----TACAAttttgatgccaatcgaaagattttgtcacaaactcacaatgaa
gi|13 : acggatttt--------TCAAC--CAAT-TTAATATCTGTAAAGTTTGAAACAA-AGTG--ATAA--C-GA-TCTTACT---ACTAAGA-----------TA--AA---------------TATCAAAAACTTTTTC------------T-----TGGAT---TTGAC--CAAGC-CAATAA-TTTGT-ACAAATGTACTTGCAATCAAATTTGA----------A------ACA----------------A------ATCATGAAT--AATTTTTTTCTT---CAATTTATCCAACTGTTCTTGAT---TA-CAAAATAATGC-TAT-----GTA-AGTA-C-TT-TTAA--AATGTTTC--AC-----------TGTTTT-GGAAAGCTCAAAGTGTCTATACTT--TACAGTGATGCTACTCTTGAGAccatatacaata
gi|14 : ATACACAATAT--TGTG--ATTGTGCTCCTGA--TCAATACATTACTG-TTTGT-C-AGCTTTCTGCAAAGCTCTTTGTAG--------TGC-----T------CC-------------------TAAAGATAAACATGAAAATA---------------TATTC--------------TATTTT---ATGTAT--AT---------------AT-----A---CTTTTCTTGCTAAAAATAAGGCTACAAACTCGACAAAAAGCAAGTATATT---Ttatttgatcttacattt
gi|15 : atgaaatgttagaatttaaatggaagacaaatatacacatgtacttattcaaaatttctattttgtctatatctgaaaatgctacgctgtttgtTACACAACAT--TGTA--TATATACTCCTGA--T-AAT---TTACTG-TTCAT-C-TGTTTTCTACAAAACT-TTTGGAAT--ATTACTTT-----T------CCAAACCCTAAACAAAGAAAAT--------AC------------------------TACTC--------------TATTCT---ATCAATCAAT--A--T--TT--CAAATTAAAAA---CTTTTCTCAGTTAATAAAGAAAGACGGAC-CTATAAAAA-TGAGCATTTT---TGC-ACAT-TA------AATTCC-AAT-------T-ATT---TA
gi|16 : aagtttctgaattatttatgttttaggaactctgcattcgAAGTAT-T--CTG-C----AA-CC-------------CAG----AA-AA----G--TTGAAA--ATAT--CA---T---T-CATGTGTATTTGGG--TGC-TG-----ATAC-CATTTC---TT--------TT--GTT---ATT---TTGTTAATTTTCTAC--CAAA-TTGGAAACTGTAAATTTTGAAATAA-AGTGT-ATGAAAT-GC-TTTTACA---ACTAAGA-----------TG--AAAAGTAAATACCTAT-T-------------TC------------T-----TGG-T---TTCACTTC-AGC-AAAT----------CAAAT--ACATGCAATCAAGTTTGACAC--A----ATTC---ACAAC------CT-C--AAA------ATCATGata
gi|18 : a-------------------T--------AC------------------------TG--C--------------TGTTTT---AT-AATTTAT--G--TATTT--G-AAT-----A---CCATTTTCCCTAAGTATAGAGCAACGCACTCTACAAAAGATGAGCATTTC---TA--ACAC------------TCT-GA--------T-ATC---ATG-------GAGTACA-TACA--T-TT----TTTGAATTTACATGT----TCAATAGGATGTT----CATACCTG-AATATTATTC----CGTAAATT
gi|19 : taaagaataaaaagaaaataTTTTCTTGGT---TA-TGAAATAA--CACA------GT-----G-T-T--T-----AATGGT--ATAT-----------TATTTT-GGTAAGCTGAAAGTGTT--TACAC--TACAGTGATGTTATTCTTGAAACT-GCATATATT-A---AAG----CAAATAAGA-----TGTCGGCTTCCATATA--AAATT-AGTAGTAA-T-TTCTAGCCTGATTGCGTTTTatttgtca
gi|2 : TACATAGTAT--TGTA--AATGCGCTCTTGA--T-GAT---TTACTG-TTCGT-T-AGTTTT-TACACCATTTTTTGTAGC--ATTTCTAT-----T------CC-------------------gataatctgtacat
gi|2 : atttcctaatgctcctgtttttatctagaatttgataactattaatatttcttgcaaaattattttttcaaaaattatccttgttatggtcattgaaattatgccagcataaaaatattatgtatatatgcagtgcttcctagtctcaatttcacactttcagtgagcagttggcttattacaaaattctagaaaaaatggaaaaagaaaacagttctgaatattcaattgtaggtctatgaacttgactgtg------------------------TATTA--------------AATTTT---ATCAATTACT--G--T--T--------------------TTCTTCCTATAACTAGGGCTAGGGCCTGTACAAAAAGTGAGAATTTT---TGC-ACAC---------AGTTGC-A-----------ATT-----A-------GAGTAAATT-----T-TT--A-CTGGAATTAATGTGTTAAAT-AACA-TATG-CTATGTATACCTGAAATA-TAAA-----TGTAaagtcctaaaaataaaaagagaagataggagtatattaaattttatcaattactgttttcttcctataactagggctagggcctgtacaaaaagtgagaatttttgcacacagttgcaattagagtaaatttttactggaattaatgtgttaaataacatatgctatgtatacctgaaatataaatgtattcaaccaatttaatatctgtaaagtttgaaa
gi|22 : atttcctaatgctcctgtttttatctagaatttgataactattaatatttcttgcaaaattattttttcaaaaattatccttgttatggtcattgaaattatgccagcataaaaatattatgtatatatgcagtgcttcctagtctcaatttcacactttcagtgagcagttggcttattacaaaattctagaaaaaatggaaaaagaaaacagttctgaatattcaattgtaggtctatgaacttgactgtgtacatagtattgtaaatgcgctcttgatgatttactgttcgttagtttttacaccattttttgtagcatttctattccaagtcctaaaaataaaaagagaagataggagtaGTAT-A--CTG-T----AA-CT-------------CTG----AA-AA----G--TTGAAA--ATAT--CA---C---T-TA-----------G--TGC-T---C--A-AA-CATTTC---TT--------CTTAATTTC-GTT---TC--------TTAAT--CAAA-TC-GAAACTGTACAGTTTGAA-----------ATAAAAT-GC-TTTCACT---CCTAAGA-----------TGCAAA---------------T-------------TC------------ttcaaccaatttaatatctgtaaagtttgaaa
gi|23 : aattaatattttaagaaaacTTTTCTTGGT---TA-CAAAATAATGCGAA------GTACAATA-TGTACTAAATAAATGT--CATAC-----------CGCTCT-GGAATATTGAAAGTGTC--TACTT--TATAGTGTTGTTATTTTTTATACT---ATCTATT-----------------TTTA-----TATTTGCTTTCATATT--AGGTA-GGTAG-AA-A-ATCCACCCCTATTGTGCTTTAGgatacgttttcttggattcc
gi|24 : -------GAGTAAA-G-----TGTT--AATTGAAATTGACATAT----T-AACA-AATG-C----CATATCTAAAATA-TAAT-----TGTAAATTGG---------------TTGC-----------CA----TA------TATAC--------T---------GTTATGTAC-A--AAGTT----AA-TT-------------CTA----TA-AT----C--CTGAAG--ATATCACA---T---TGTAT---------GG--TGC-GG--T---TAT-CATTTC---TT--------CT--GTT---ATT---T
gi|25 : -------------------T--------AA------------------------TATTC--------------CATTTT---ATCAATAAGT--GATT--TT--C-AAT-----A---CTGCTCGTCCTAAACATAGGACTAAGGATGCTAATATTAGACAGCA-TTT---TGT-ACACAAA------AGTTCCAAG--------T-AT
gi|26 : gttgtagtatgacatttccgaggtctaaaattaaaaataaaTAT-----------TGTTTT-GGAAAGCCGAAAGCGTC--TAC-T--TACAGCTACGTTATTCTTGAACCTTGCAAC---------AAA----T----AAGA-----TTTCTGCGTCCATATT--AGGTT-AGTTG-AA-ATTTCCATCCTGATTGTGTTTAAG
gi|27 : TACACAATATATTGTA--ATTATGTTTCTGA--T-GTT---TCACTGCTTCATACGAGTTTTC-AT-AAACTC-TTATAGT--ATT-CTTTAACAGT------CC-------------------T--------Actgatagatattatatctacacatat
gi|28 : tcatttgattgtggagctacgggttctgctttgTAGGGCTACGGACTCTACA--------------T---TGT-ACAC-AATATTGTAGTTAC-AA--------T-ATT---------------GT-AG-T-----T-CTCGA-TTAGAATTAAaaaaa
gi|3 : gcaagaacactagtaatgtaattcattcacttaattt------------------------TATTC--------------TATTTT---ATCAATTTAT--G--T--TTTCC-AAA-----A---AAATTCTGGCTGAAAATA----------CTTTACAAAAACTTATCAAATTGCATAT-ATAC-AATGT---AGTACC-A-----------ATT---T-G-------GAGTAAA-T-----T-TT--A-TTGGAATGAACATGT----T-AACA-GATG-T----CGTACC--AAATA-TATTATATTTGTAAATTGGTTGTCGTACATGTACATGT-----A-----TA----TACAACAATATAC--------AATATTTTCAGCAAAATATTA--CTA-T----AA-CC-------------CTG----AA-AA----G--TAGAAA--ATAT--TAAACT---T-TA----------GT--TGC-TG-----ATGT-CATTAC---TT--------CT--GTC---ATT---TC--------TCAAC--TGAAGTCGGGAACTGTAAATTTTGAAATGA-AGTGT-ATAAAAC-GC-TCTTACA---ACTAAGA-----------TG--AAAATTA----------TCA-----------TT------------T-----TGGAT---TTTAC--CGAGC-AAATAA-TTTGT-AAAATT--ACACGCAATCAAATT-------AA----A------A-A--------TTGC--AGA------ATTGTTTAG--A--------------AAATTTAACGAACCTCTC--------CA-CAAAATAttgc
gi|30 : tgtaatattacttttccaagtcctagagataaataagaatataAA----A------AC---------CT-C--AAA------ATCATGTAT---------TTTTT---CAATTACACCAACTTATTTTGGT---CA-TTGAATAAAGCtaccattaaat
gi|31 : aaatcatgtcacaattc--AATGCTA--TAC-----------TGTTCT-GGAGAACTGAAAGTGTC--TACTT--TACAGCGATGTTATTTTTGACACaatggcttggtt
gi|32 : tgaagtacttTTATTTATTCA------TTTTTGTGCAAACTCACCAACTTATCTTGG----TA-CAAAATAAT
gi|4 : taagtATGT----T-AACA-GATA-T----AATACCTGAAATA-TATT------GTT--TTGGTATC-----------ATGT-----A-----TA----CAACCG--TGTAC--------AATATTTTAAGCAAAGTAT-ATACTG-T----AA-TT-------------CTG----AATAA----G--TTGAAA--ATAT--C----------TA----------GG--TAC-TC--T---TAC-CATTTC---TTGGGTCATTTC--GTT---ATT---TT--------TCAAC--CAAA-TCGGAAACT----ATTGTGAAATAA-AATGT-ATAAAAT-TCTTTTTATT---ACTAAGA-----------TA--AAAATTAAATACGCTATT-------------CC------------T-----TGGAT---TTCAC--CGTGCAAAATAA-TCTGT-ACAAAT--AAATGCAGTCAAATGTGCCAC-AA----ATC----ACACC------CT-C--TAA------ATAATATAT---------TTTTG---CAATTTATACAA-TTTTTTTGGT---AA-CAAAAT--TGC------------------------AAA--G----TACATG-------------GTTTT-GGTTTGCTGAAAGTGTA--TTCTT--TACACTGATGTTTTTCTTGGATCT---ATCTATTCAAACAAA----C----AAGA-----TATCTGCTTTCATATTTGATATTAAGTAG-AACA-TTCCACCCTCATTGTGTTTCA
gi|5 : TTGTAGTCAATTACTCC-----TAATAA-TC-------------------C--------AC------------------------TGTTCATC-----------TGTTTTC--AACAA--AATTCA--T--TG--T-AGT-----ATTCCTGTTCTTGCTAAACATACAGCTACATACTCCACAAAAAGAGAGCATTTT---TTCGAAAG-AA------CGTTCC-A------------TT---T---------GA-TAAA-TACGGAT-TT----TTGGATTTAAGATGT----T-AACG-GATG-C----CATACCAGAAATA-TATT-----TGTGAATTAG---------------GCCT-----AGTTTTCA----AA------TATAC--------A---------ACTATGTAT-G--GTG-TTTTAAG-CTAAATATTCAGTAACTGTAGCAA-AAACATG--TTGAAA--ATA---CA---TGTAT-CA----------CGCTTGCATGCTC--ATACGAATTTTATGTC--------CT--ATC---ATTATATT--------TCAAC--CAAA-T-------TGTAAAATTC-AAATAA-AATGT-ACAAAAT-G--TTTTACA---ACTAAGAAAATTAAATACTT--AA---------------T-------------TC------------T-----TGGAA---TTCAC--CGTGC-ACATAT-TCTTT-ACAAAC--ACATGCAGTCAAACTTGACACaataaatattt
gi|6 : actctactctgtacacgataTACACAATAT--TGTA--GTTAGG-----------------TTACTG-TTCAT-C-AGATTTCTAAAAAATTCATTGCAAT--ATTACATT-----T------TC-------------------T--------ACCACTAAAAATAAATAAGAGAATAATACTC--------------TATTTT---ATCAATTAAT--G--T--TTT-C-AAT-----A---CTGCTCTTAATAAACATAGGGCAATGGACTCTACCAAAAGAGAGCATTTT---TGC-ATAC-AA------CGTTCA-CGTTACCTTAT-ATC---GAG-------GAGTAAATT-----T-TT--A-TTGGAATTAACATGT----A-AACA-GATG-C----CATATCTGAAATA-CATT-----TGTAAATTGG---------------GTGTCAAAGA-----TACATCCA------TATACAATATTTAA---------GCAAAGTAT-A--CTG-T----AA-CT-------------TGG----AA-agatcacac
gi|7 : tatgttttatagtttgaatttcatactttcattctagaaaaactgggacaaaaacaaagtttctgaatattataagtcatttaattttggagctacggactctactgtgtatAAATA--A--CTG-T----AAATT-------------CTG----AA-AA----AGTTTGAAATTATAC--TA---T---T--A----------TT--TAC-TC--T--A----CTTTTC---TT--------TTC-ATTCGTAAT---TT--------TCAGG--C-----------CT-----TTTTTAACTACTAGTGTTATAAAGTCGT-TTTT-CTTTTACTAATA-----------TG--AA---------------TAA-----------TCAGATACTTTTATC-----TGGAT---TTCAC--CAAGC-ATATAACTTTTT-ACAAAT--TCGTGCGG-CAA--TTGACACAAATTTCA------CCA--------CT-C--AAAAATAGTATTATGTGT--A------ATTTA---AGATTTCAC
gi|8 : atacaacattatggaatatttcaagcaagtTA--ACTATGCTCCTGAGCT-AAT---TTACTG-Tttataacaattaaattatgttttattataatttaagtcttggtttatcatgtatccttgaaattctatgtactaaatcaaacaactttcctagctggtggatagaaaatgccacttttagccgtcatcatgtttacgttgaatgacttccattact
gi|9 : caaataaattcacgccgaaatacaatcgggtgaactattttaattatctctatttttgcgcatatttatagacaaaaagtaaataaatttttgaaatcttttataattttacttggttcttatgagattaaactaagtttatctaaaaattactcggactaccgttaaccctttcttgcaaaatcaatttttaagaatatctttgttatagtcgaaatttactacacaaaatagttatgtatatattgtgttttaagtcatttctactttcagtagcagttgatgtattacataattcctagaaaaattggagtatgattaacaaagtttctggatgttgtaatttattcatttattttgggctatcggattcttacgtgaactataacatatttagtAAATTTTTCCACAA-AGTTT-ATAA-----T-CTCTAGT---TCAAGGA-----------GT--AA---------------T-------------TC------------TATTACCGGATAGTTTCAT--CTAGA-AAATAA-TCTGT-ACAAAT--ATATGCAATCATATTTGACA-TAA----ACCATACACATGTATACTCT-C--ATA-------TCATAAAT--A------TTATC---TAATTTAACAAACTTTTCGTGGTACGTAACAAACTAGAGCAAA------GTA---C--T-TA--------ATGCTG--TAC-----------TGTTTTTGGAAAGCAGAA-GTGTC--TAGCTACTTCAGTGGTGTTCTTCTTGAAACT-TGATTCATT-A---CAA----C----A-GACAATTTATCTGCTTCCTTATT--GTGTT-AGTAG-AA-A---CTATCCTCAATGGGTTTTA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TAATGATTTTTATTTTGTTCTTGTGAAACAGACTTATTTTATCTAAAAACATTTCTTGATTACCATTAACTTTATTTTCTTACTAAAGCATTTATATCTAAAATATATACTAGTATATTTCTTTTGCATTGAAAATATACTGATACAGAAACATCATAAATATTGTGTTTTATATCCTGAATTTCATACTTTTATTGAGCAGTTGGTTTACTACATAATTCTACAAAAACTTGGACAAGAACAAGGTTTTTGAATATTGTAATTCATTCAATATGATGACAATTGATTCGTCC
Unaligned ( gi|17 ): AAAAGCAAATAAAATCTTAAATATATTTTAAAATGCTTTTATCTTGTTCTTATTAGACAAAAATTATCCTTGTTATGGTCATTTTAGAAATATTATGTATATTAATTGTGAAATATTATGATATATTGTGTTTCATACTCTGAATTTCATACTTTCAGTGGGCAGTTGGCTTATTACGTAATTCTAGAAAAATTGTGACAAGAACAAAGTTTCTGAATATTGTAATTTATTCCTTT
Unaligned ( gi|20 ): AAATACAATGTGAAACCTATTGATGATTTTATTATGATATTAAGTCATGAGACAAACTTACTTTATCTAAAATATAACTTAATTAGCCTTAAGCTTTCTTGCAAAATCATTTCCTTAAGAATCTTAATTTGGATCATTGAAATTATACTGACACAGAAAAATTATATATATTTT
Unaligned ( gi|21 ): TCATACTTTCAGTGAGGAGTTGATTTATTACAAACTTCTACAATACATGGGACAAGATCAAAGTTCCTGGGTACTAGCAATGTATCTTCTGGGTCCTAGTATTGGTATTTTGCGTGAGTAACTAGGTATTGTATTTCCTGGGTACTATTATTTTGTAATTTTTATCCGAGGT
Unaligned ( gi|29 ): TAGTTTGAATTCATACTTTCAGTGAGCAGTTGGCTTTTTACATAAATCTAGAAAAGCTGGGACACGAACAAAGGTTCTGAATATTTATATTGTAGGACTAC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111
lowQualScore : 11 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111 11111111111111111111111111 222222222 55555555555555555555555555555 2222222 1111 111111 11111 3333333333333333333333333333333333333333333333333333333333333333333 2222222222222 1111111 555555555555555555555555555555555555555555 111111111111111111 11111111 999999999999999999999999999999999999999999999999999999999999999999 1 555555555555555555555555 111 1111 11111 22222222222222222222222222222222222222222222222222222 111 333333333333333333 11111 1 1111
lowQualScore : 77 999 9999999999 5 1 5 5 1 11 66 3 1 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 22 88888888888888888888888888 2 1 1 2 2 22 666 4 111111111 33333333333333333333333333333 1111111 4 6666 9999 4 4 111111 00 4 55555 1 4444444444444444444444444444444444444444444444444444444444444444444 1 4 66 4 9999 4 4444444444444 9999 4 7777777 66 66 555555555555555555555555555555555555555555 888 999999999999999999 777 66666666 66 4 66 0 0 22 0 4 44 3 4 66 777 888888888888888888888888888888888888888888888888888888888888888888 888 66 5 5 0 1 2 66 4 1 4 999999999999999999999999 4 9999 1 66 5 666 0000 0 0 22222 3 55555555555555555555555555555555555555555555555555555 4 1 66 5 66 888 0 000000000000000000 44444 77 5 1 8888 1 11
lowQualScore : .. ... .......... . . . . . .. .. . . ....................................................................................... ... .. .......................... . . . . . .. ... . ......... ............................. ....... . .... .... . . ...... .. . ..... . ................................................................... . . .. . .... . ............. .... . ....... .. .. .......................................... ... .................. ... ........ .. . .. . . .. . . .. . . .. ... .................................................................. ... .. . . . . . .. . . . ........................ . .... . .. . ... .... . . ..... . ..................................................... . . .. . .. ... . .................. ..... .. . . .... . ..
lowQualScore : 99 111 8888888888 0 4 7 7 7 77 99 4 0 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 000 55 11111111111111111111111111 4 0 0 3 4 22 444 0 777777777 33333333333333333333333333333 4444444 4 9999 4444 4 4 000000 99 4 66666 0 8888888888888888888888888888888888888888888888888888888888888888888 0 4 11 4 4444 4 4444444444444 4444 4 6666666 99 99 888888888888888888888888888888888888888888 888 555555555555555555 888 11111111 11 4 66 9 9 99 6 0 77 2 0 33 000 999999999999999999999999999999999999999999999999999999999999999999 888 99 4 0 0 1 5 11 4 9 4 333333333333333333333333 4 9999 9 33 0 222 1111 4 8 33333 6 00000000000000000000000000000000000000000000000000000 4 0 11 4 11 999 1 000000000000000000 33333 99 7 4 3333 7 33
consensus : ATACACAATAT--TGTA--ATTGTGCTCCTGA--T-AAT---TTACTG-TTCGT-C-AGTTTTCTACAAAACTCTTTGTAGT--ATTACTNT-----T------CC-------------------T--------AC------------------------TATTC--------------TATTTT---ATCAATTAAT--G--T--TT--C-AAT-----A---CTNTTCTTNCTAAANATAGGGCNACGGACTCTACAAAAAGTGAGCATTTT---TGC-ACAC-AA------AGTTCC-AG--------T-ATT---TAG-------GAGTAAA-T-----T-TT--A-TTGGAATTAACATGT----T-AACA-GATG-C----CATACCTGAAATA-TATT-----TGTAAATTGG---------------GTGT-----A-----TA----TA------TATAC--------A---------GCNAAGTAT-A--CTG-T----AA-CT-------------CTG----AA-AA----G--TTGAAA--ATAT--CA---T---T-CA----------GG--TGC-T-G--T--ATAC-CATTTC---TT--------CT--GTT---ATT---TT--------TCAAC--CAAA-TCGGAAACTGTAAATTTTGAAATAA-AGTGT-ATAAAAT-GC-TTTTACT---ACTAAGA-----------TG--AA---------------T-------------TC------------T-----TGGAT---TTCAC--CGAGC-AAATAA-TCTGTACAAAT--ACATGCAATCA-AATTTGACAC-AA-----A----A-CA----------CT-C--A-AAATCAT-GTA-T--ATTTTT---CAATTTAACCAACTTTTCTTGGT---T-ACAAAATAATGCGAA------GTA-AGCA-T-T-A-T-AA--AATGCTACATAC-----------TG-TTTTGGAAAGCTGAAAGTGTC--TACCT--TACAGTGATGTTATTCTTGAAACT-GCATCTATT-A---AAA----C----AAGA-----TATCTGCTTCCATATT--AGGTT-AGTAG-AA-A-TTCCACCCTGATTGTGTTTTAG
Reference ( family-4141 ) : ATACACAATAT--TGTA--ATTGTGCTCCTGA--T-AAT---TTACTG-TTCGT-C-AGTTTTCTACAAAACTCTTTGTAGT--ATTACTNT-----T------CC-------------------T--------AC------------------------TATTC--------------TATTTT---ATCAATTAAT--G--T--TT--C-AAT-----A---CTNTTCTTNCTAAANATAGGGCNACGGACTCTACAAAAAGTGAGCATTTT---TGC-ACAC-AA------AGTTCC-AG--------T-ATT---TAG-------GAGTAAA-T-----T-TT--A-TTGGAATTAACATGT----T-AACA-GATG-C----CATACCTGAAATA-TATT-----TGTAAATTGG---------------GTGT-----A-----TA----TA------TATAC--------A---------GCNAAGTAT-A--CTG-T----AA-CT-------------CTG----AA-AA----G--TTGAAA--ATAT--CA---T---T-CA----------GG--TGC-T-G--T--ATAC-CATTTC---TT--------CT--GTT---ATT---TT--------TCAAC--CAAA-TCGGAAACTGTAAATTTTGAAATAA-AGTGT-ATAAAAT-GC-TTTTACT---ACTAAGA-----------TG--AA---------------T-------------TC------------T-----TGGAT---TTCAC--CGAGC-AAATAA-TCTGTACAAAT--ACATGCAATCA-AATTTGACAC-AA-----A----A-CA----------CT-C--A-AAATCAT-GTA-T--ATTTTT---CAATTTAACCAACTTTTCTTGGT---T-ACAAAATAATGCGNA------GTA-AGCA-T-T-A-TAAA--AATGCTACATAC-----------TG-TTTTGGAAAGCTGAAAGTGTC--TACCT--TACAGTGATGTTATTCTTGAAACT-GCATCTATT-A---AAA----C----AAGA-----TATCTGCTTCCATATT--AGGTT-AGTAG-AA-A-TTCCACCCTGATTGTGTTTTAG
gi|1 : ATGCACAATAT--TGTACCATTGTGCTCCTGA--T-A-T---TTAATG-TTCAT-C-AGTTTTCTACAAAACTCTTGGTAGT--ATTACTAT-----T------CC-------------------T--------AC------------------------TATTC--------------TGTTTC---GTCAGTTGAT--G--T--TT--C-AAC-----A---CTTTTCTTACTAAGAATAGGACAACAAACACTGCGAAATGTGAACATTTC---TGC-ACAC-AA------AGTTCC-AG--------TGATT---TAG-------GAGTAAA-T-----T-TTC-A-TTGAAATTAACATGA----T-AACA-GATG-T----CATACCTGGAATA-TATT-----TGTAAATT-T---------------GTGT-----A------A----TA------TACAC--------A---------ACTAAGTGT-A--TTA-C----AA-CC-------------CTG----AA-AAG---G--TTGAAA--ATAT--CA---T---C-CA----------AG--TGC-TGG--TCAATGC-CATTTC---TT--------CT--GTA---ATT---TT--------TCAAC--CAAA-TCAGAAGTTGTAAATTTTGTAATAA-AGTTT-ATAAAAT-GC-TTTTACT---ACTAAGA-----------TG--AA---------------T-------------TC------------T-----TGGAT---TTCAC--CAAAC-AAATGATTTTTTACAAAT--ACATGCAATTA-AATTTAACACTAA-----A----A-CA----------CC-CTTA-AAATCAT-GTA-T--ATTTTT---CAATCTCACCAGCTTTTCTCCAT---T-A-AAAATGATGCGTGTTATATATA-TACA-TGTAA-TAAA--AATGTTACATATAATAAAAATAATG-TTTTGGAAAGCTGAAAATATC--TACCT--TTCAGTGATGTTATTCTTGAAACT-GTATCTATT-A---AAA----C----AAGA-----GGTCTGCTTTCATATT--AGGTT-AATAG-AA-----CCAGCCAGATTCTGTTCTAG
gi|10 : TT---TT--------TGAACGGCACA-TCGGAAACTG---ATTTTGAAATAA-------------T-GT-CTTTACT---ACTGAGA-----------TG--GA---------------
gi|10 : T-T--A-AATTTAT-TTA-TTCATTTTTTGGCAATT-AACCAACTTTTCCTGGT---A-ACAAGATAATGTA----------A-AGCACT-T-A-T-------TCCTAT-TAC-----------TG-CTTCGAAAAGC-------GTC--TACCT--AACAGTGATGGTATACTTGAAACT-GTGTCTATT-A---AAGGAACC----AAGA-----TATCTGCTTCCATATT--AGGTA-AGTAGCGA-A-TTCCACACAGATCTTATTTTAGaatgaaatagataatttgttttaaatttatttattcattttttggcaattaaccaacttttcctggtaacaagataatgtaaagcacttattcctattactgcttcgaaaagcgtctacctaacagtgatggtatacttgaaactgtgtctattaaaggaaccaagatatctgcttccatattaggtaagtagcgaattccacacagatcttattttagttttgatgccaatcgaaagattttgtcacaaactcacaatgaa
gi|12 : tttttgaacggcacatcggaaactgattttgaaataatgtctttactactgagatggaaatgaaatagataatttgttTACACAATAT--GGTA---TTGTGCTTCTGA--T-AAT---TTACTG-TTCAT-C-AGTTTTCTACTAAATT--TTGTAGT--ATTACTTT-----TTCAAGTCC-------------------T--------AA------------------------AAATGAAAAAAAAAGAAAATATTTTGTCATCAATTAAT--GC-T--TT--T-GAT-----A---CTTTTCTAACTAAAATTAGGGCCACAGACACTACAACAAGTGAGCATTGT---TGC-ACAC-AA------AGTTCCAAG--------T-GTCTGATAGTCATACTAAGTTAA-T-----T-TC--A-TTGGAATTAACATGT----T-AACA-AATG-C----CATGCCT-------TATT-----TACAAttttgatgccaatcgaaagattttgtcacaaactcacaatgaa
gi|13 : acggatttt--------TCAAC--CAAT-TTAATATCTGTAAAGTTTGAAACAA-AGTG--ATAA--C-GA-TCTTACT---ACTAAGA-----------TA--AA---------------TATCAAAAACTTTTTC------------T-----TGGAT---TTGAC--CAAGC-CAATAA-TTTGTACAAATGTACTTGCAATCA-AATTTGAAAC-AA-----A-------------------T-C--ATGAATAAT-TTT-T---TTCTT---CAATTTATCCAACTGTTCTTGAT---T-ACAAAATAATGCTAT------GTA-AGTA-C-T-T-TTAA--AATGTTTC--AC-----------TG-TTTTGGAAAGCTCAAAGTGTCTATACTT--TACAGTGATGCTACTCTTGAGAccatatacaata
gi|14 : ATACACAATAT--TGTG--ATTGTGCTCCTGA--TCAATACATTACTG-TTTGT-C-AGCTTTCTGCAAAGCTCTTTGTAG--------TGC-----T------CC-------------------TAAAGATAAACATGAAAATA---------------TATTC--------------TATTTT---ATGTAT--AT---------------AT-----A---CTTTTCTTGCTAAAAATAAGGCTACAAACTCGACAAAAAGCAAGTATATT---Ttatttgatcttacattt
gi|15 : atgaaatgttagaatttaaatggaagacaaatatacacatgtacttattcaaaatttctattttgtctatatctgaaaatgctacgctgtttgtTACACAACAT--TGTA--TATATACTCCTGA--T-AAT---TTACTG-TTCAT-C-TGTTTTCTACAAAACT-TTTGGAAT--ATTACTTT-----T------CCAAACCCTAAACAAAGAAAAT--------AC------------------------TACTC--------------TATTCT---ATCAATCAAT--A--T--TT--CAAATTAAAAA---CTTTTCTCAGTTAATAAAGAAAGACGGAC-CTATAAAAA-TGAGCATTTT---TGC-ACAT-TA------AATTCC-AAT-------T-ATT---TA
gi|16 : aagtttctgaattatttatgttttaggaactctgcattcgAAGTAT-T--CTG-C----AA-CC-------------CAG----AA-AA----G--TTGAAA--ATAT--CA---T---T-CATGTGTATTTGGG--TGC-T-G-----ATAC-CATTTC---TT--------TT--GTT---ATT---TTGTTAATTTTCTAC--CAAA-TTGGAAACTGTAAATTTTGAAATAA-AGTGT-ATGAAAT-GC-TTTTACA---ACTAAGA-----------TG--AAAAGTAAATACCTAT-T-------------TC------------T-----TGG-T---TTCACTTC-AGC-AAAT---------CAAAT--ACATGCAATCA-AGTTTGACAC-AATTCACA----A-C-----------CT-C--A-AAATCAT-Gata
gi|18 : a-------------------T--------AC------------------------TG--C--------------TGTTTT---AT-AATTTAT--G--TATTT--G-AAT-----A---CCATTTTCCCTAAGTATAGAGCAACGCACTCTACAAAAGATGAGCATTTC---TA--ACAC------------TCT-GA--------T-ATC---ATG-------GAGTACA-TACA--T-TT----TTTGAATTTACATGT----TCAATAGGATGTT----CATACCTG-AATATTATTC----CGTAAATT
gi|19 : taaagaataaaaagaaaataTTTTCTTGGT---T-ATGAAATAA--CACA------GT---GT--T-T---------AATGGT--ATAT-----------TA-TTTTGGTAAGCTGAAAGTGTT--TACAC--TACAGTGATGTTATTCTTGAAACT-GCATATATT-A---AAG----CAAATAAGA-----TGTCGGCTTCCATATA--AAATT-AGTAGTAA-T-TTCTAGCCTGATTGCGTTTTatttgtca
gi|2 : TACATAGTAT--TGTA--AATGCGCTCTTGA--T-GAT---TTACTG-TTCGT-T-AGTTTT-TACACCATTTTTTGTAGC--ATTTCTAT-----T------CC-------------------gataatctgtacat
gi|2 : atttcctaatgctcctgtttttatctagaatttgataactattaatatttcttgcaaaattattttttcaaaaattatccttgttatggtcattgaaattatgccagcataaaaatattatgtatatatgcagtgcttcctagtctcaatttcacactttcagtgagcagttggcttattacaaaattctagaaaaaatggaaaaagaaaacagttctgaatattcaattgtaggtctatgaacttgactgtg------------------------TATTA--------------AATTTT---ATCAATTACT--G--T--TT--------------------TCTTCCTATAACTAGGGCTAGGGCCTGTACAAAAAGTGAGAATTTT---TGC-ACAC---------AGTTGC-A-----------ATT-----A-------GAGTAAATT-----T-TT--A-CTGGAATTAATGTGTTAAAT-AACA-TATG-CTATGTATACCTGAAATA-TAAA-----TGTAaagtcctaaaaataaaaagagaagataggagtatattaaattttatcaattactgttttcttcctataactagggctagggcctgtacaaaaagtgagaatttttgcacacagttgcaattagagtaaatttttactggaattaatgtgttaaataacatatgctatgtatacctgaaatataaatgtattcaaccaatttaatatctgtaaagtttgaaa
gi|22 : atttcctaatgctcctgtttttatctagaatttgataactattaatatttcttgcaaaattattttttcaaaaattatccttgttatggtcattgaaattatgccagcataaaaatattatgtatatatgcagtgcttcctagtctcaatttcacactttcagtgagcagttggcttattacaaaattctagaaaaaatggaaaaagaaaacagttctgaatattcaattgtaggtctatgaacttgactgtgtacatagtattgtaaatgcgctcttgatgatttactgttcgttagtttttacaccattttttgtagcatttctattccaagtcctaaaaataaaaagagaagataggagtaGTAT-A--CTG-T----AA-CT-------------CTG----AA-AA----G--TTGAAA--ATAT--CA---C---T-TA-----------G--TGC-T----C--A-AA-CATTTC---TT--------CTTAATTTC-GTT---TC--------TTAAT--CAAA-TC-GAAACTGTACAGTTTGAA-----------ATAAAAT-GC-TTTCACT---CCTAAGA-----------TGCAAA---------------T-------------TC------------ttcaaccaatttaatatctgtaaagtttgaaa
gi|23 : aattaatattttaagaaaacTTTTCTTGGT---T-ACAAAATAATGCGAA------GTACAATA-TGT-ACTAAATAAATGT--CATAC-----------CG-CTCTGGAATATTGAAAGTGTC--TACTT--TATAGTGTTGTTATTTTTTATACT---ATCTATT-----------------TTTA-----TATTTGCTTTCATATT--AGGTA-GGTAG-AA-A-ATCCACCCCTATTGTGCTTTAGgatacgttttcttggattcc
gi|24 : -------GAGTAAA-G-----TGTT--AATTGAAATTGACATAT----T-AACA-AATG-C----CATATCTAAAATA-TAAT-----TGTAAATTGG---------------TTGC-----------CA----TA------TATAC--------T---------GTTATGTAC-A--AAGTT----AA-TT-------------CTA----TA-AT----C--CTGAAG--ATATCACA---T---TGTAT---------GG--TGC-G-G--T---TAT-CATTTC---TT--------CT--GTT---ATT---T
gi|25 : -------------------T--------AA------------------------TATTC--------------CATTTT---ATCAATAAGT--GATT--TT--C-AAT-----A---CTGCTCGTCCTAAACATAGGACTAAGGATGCTAATATTAGACAGCA-TTT---TGT-ACACAAA------AGTTCCAAG--------T-AT
gi|26 : gttgtagtatgacatttccgaggtctaaaattaaaaataaaTAT-----------TG-TTTTGGAAAGCCGAAAGCGTC--TAC-T--TACAGCTACGTTATTCTTGAACCTTGCAAC---------AAA----T----AAGA-----TTTCTGCGTCCATATT--AGGTT-AGTTG-AA-ATTTCCATCCTGATTGTGTTTAAG
gi|27 : TACACAATATATTGTA--ATTATGTTTCTGA--T-GTT---TCACTGCTTCATACGAGTTTTC-AT-AAACTC-TTATAGT--ATT-CTTTAACAGT------CC-------------------T--------Actgatagatattatatctacacatat
gi|28 : tcatttgattgtggagctacgggttctgctttgTAGGGCTACGGACTCTACA--------------T---TGT-ACAC-AATATTGTAGTTAC-AA--------T-ATT---------------GT-AG-T-----T-CTCGA-TTAGAATTAAaaaaa
gi|3 : gcaagaacactagtaatgtaattcattcacttaattt------------------------TATTC--------------TATTTT---ATCAATTTAT--G--T--TTTCC-AAA-----A---AAATTCTGGCTGAAAATA----------CTTTACAAAAACTTATCAAATTGCATAT-ATAC-AATGT---AGTACC-A-----------ATT---T-G-------GAGTAAA-T-----T-TT--A-TTGGAATGAACATGT----T-AACA-GATG-T----CGTACC--AAATA-TATTATATTTGTAAATTGGTTGTCGTACATGTACATGT-----A-----TA----TACAACAATATAC--------AATATTTTCAGCAAAATATTA--CTA-T----AA-CC-------------CTG----AA-AA----G--TAGAAA--ATAT--TAAACT---T-TA----------GT--TGC-T-G-----ATGT-CATTAC---TT--------CT--GTC---ATT---TC--------TCAAC--TGAAGTCGGGAACTGTAAATTTTGAAATGA-AGTGT-ATAAAAC-GC-TCTTACA---ACTAAGA-----------TGAAAA---------------TTATCA--------TT------------T-----TGGAT---TTTAC--CGAGC-AAATAA-TTTGTAAAATT--ACACGCAATCA-AATT-------AA-----A----A--A----------TTGC--A-GAATTGT-TTA-G--A--------AAATTTAACGAACCTCTC--------C-ACAAAATAttgc
gi|30 : tgtaatattacttttccaagtcctagagataaataagaatataAAAT---CATG---TCACAATT-----C-AA-----A----A-C-----------CT-C--A-AAATCAT-GTA-T---TTTTT---CAATTACACCAACTTATTTTGGT---C-ATTGAATAAAGCtaccattaaat
gi|31 : --AATGCTA--TAC-----------TG-TTCTGGAGAACTGAAAGTGTC--TACTT--TACAGCGATGTTATTTTTGACACaatggcttggtt
gi|4 : tgaagtacttATGT----T-AACA-GATA-T----AATACCTGAAATA-TATT------GTT--TTGGTATC-----------ATGT-----A-----TA----CAACCG--TGTAC--------AATATTTTAAGCAAAGTAT-ATACTG-T----AA-TT-------------CTG----AATAA----G--TTGAAA--ATAT--C----------TA----------GG--TAC-T-C--T---TAC-CATTTC---TTGGGTCATTTC--GTT---ATT---TT--------TCAAC--CAAA-TCGGAAACT----ATTGTGAAATAA-AATGT-ATAAAAT-TCTTTTTATT---ACTAAGA-----------TA--AAAATTAAATACGCTATT-------------CC------------T-----TGGAT---TTCAC--CGTGCAAAATAA-TCTGTACAAAT--AAATGCAGTCA-AATGTGCCAC-AA-----ATC--A-CACC--------CT-C--T-AAATAAT-ATA-T---TTTTG---CAATTTATACAA-TTTTTTTGGT---A-ACAAAAT--TGCAAA------G-------------------------TACATG-------------G-TTTTGGTTTGCTGAAAGTGTA--TTCTT--TACACTGATGTTTTTCTTGGATCT---ATCTATTCAAACAAA----C----AAGA-----TATCTGCTTTCATATTTGATATTAAGTAG-AACA-TTCCACCCTCATTGTGTTTCA
gi|5 : TTGTAGTCAATTACTCC-----TAATAA-TC-------------------C--------AC------------------------TGTTCATC-----------TGTTTTC--AACAA--AATTCA--T--TG--T-AGT-----ATTCCTGTTCTTGCTAAACATACAGCTACATACTCCACAAAAAGAGAGCATTTT---TTCGAAAG-AA------CGTTCC-A------------TT---T---------GA-TAAA-TACGGAT-TT----TTGGATTTAAGATGT----T-AACG-GATG-C----CATACCAGAAATA-TATT-----TGTGAATTAG---------------GCCT-----AGTTTTCA----AA------TATAC--------A---------ACTATGTAT-G--GTG-TTTTAAG-CTAAATATTCAGTAACTGTAGCAA-AAACATG--TTGAAA--ATA---CA---TGTAT-CA----------CGCTTGCAT-GCTC--ATACGAATTTTATGTC--------CT--ATC---ATTATATT--------TCAAC--CAAA-T-------TGTAAAATTC-AAATAA-AATGT-ACAAAAT-G--TTTTACA---ACTAAGAAAATTAAATACTT--AA---------------T-------------TC------------T-----TGGAA---TTCAC--CGTGC-ACATAT-TCTTTACAAAC--ACATGCAGTCA-AACTTGACAC-AG-----A----T-CA----------Caataaatattt
gi|6 : actctactctgtacacgataTACACAATAT--TGTA--GTTAGG-----------------TTACTG-TTCAT-C-AGATTTCTAAAAAATTCATTGCAAT--ATTACATT-----T------TC-------------------T--------ACCACTAAAAATAAATAAGAGAATAATACTC--------------TATTTT---ATCAATTAAT--G--T--TTT-C-AAT-----A---CTGCTCTTAATAAACATAGGGCAATGGACTCTACCAAAAGAGAGCATTTT---TGC-ATAC-AA------CGTTCA-CGTTACCTTAT-ATC---GAG-------GAGTAAATT-----T-TT--A-TTGGAATTAACATGT----A-AACA-GATG-C----CATATCTGAAATA-CATT-----TGTAAATTGG---------------GTGTCAAAGA-----TACATCCA------TATACAATATTTAA---------GCAAAGTAT-A--CTG-T----AA-CT-------------TGG----AA-ac
gi|7 : tatgttttatagtttgaatttcatactttcattctagaaaaactgggacaaaaacaaagtttctgaatattataagtcatttaattttggagctacggactctactgtgtatAAATA--A--CTG-T----AAATT-------------CTG----AA-AA----AGTTTGAAATTATAC--TA---T---T--A----------TT--TAC-T-C--T--A----CTTTTC---TT--------TTC-ATTCGTAAT---TT--------TCAGG--C-----------CT-----TTTTTAACTACTAGTGTTATAAAGTCGT-TTTT-CTTTTACTAATA-----------TG--AA---------------TAA-----------TCAGATACTTTTATC-----TGGAT---TTCAC--CAAGC-ATATAACTTTTTACAAAT--TCGTGCGG-CA-A--TTGACAC-AA-----ATTTCACCA----------CT-C--A-AAA--ATAGTATT--ATGTGT----AATTTAA
gi|8 : atacaacattatggaatatttcaagcaagtTA--ACTATGCTCCTGAGCT-AAT---TTACTG-Tgatttcacttataacaattaaattatgttttattataatttaagtcttggtttatcatgtatccttgaaattctatgtactaaatcaaacaactttcctagctggtggatagaaaatgccacttttagccgtcatcatgtttacgttgaatgacttccattact
gi|9 : caaataaattcacgccgaaatacaatcgggtgaactattttaattatctctatttttgcgcatatttatagacaaaaagtaaataaatttttgaaatcttttataattttacttggttcttatgagattaaactaagtttatctaaaaattactcggactaccgttaaccctttcttgcaaaatcaatttttaagaatatctttgttatagtcgaaatttactacacaaaatagttatgtatatattgtgttttaagtcatttctactttcagtagcagttgatgtattacataattcctagaaaaattggagtatgattaacaaagtttctggatgttgtaatttattcatttattttgggctatcggattcttacgtgaactataacatatttagtAAATTTTTCCACAA-AGTTT-ATAA-----T-CTCTAGT---TCAAGGA-----------GT--AA---------------T-------------TC------------TATTACCGGATAGTTTCAT--CTAGA-AAATAA-TCTGTACAAAT--ATATGCAATCA-TATTTGACAT-AA-----ACCATA-CACATGTATACTCT-C----ATATCAT-AAA-T--ATTATC---TAATTTAACAAACTTTTCGTGGTACGTAACAAACTAGAGCAAA------GTA---C--T-T---------AATGCT--GTAC-----------TGTTTTTGGAAAGCAG-AAGTGTC--TAGCTACTTCAGTGGTGTTCTTCTTGAAACT-TGATTCATT-A---CAA----C-----AGACAATTTATCTGCTTCCTTATT--GTGTT-AGTAG-AA-A---CTATCCTCAATGGGTTTTA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TAATGATTTTTATTTTGTTCTTGTGAAACAGACTTATTTTATCTAAAAACATTTCTTGATTACCATTAACTTTATTTTCTTACTAAAGCATTTATATCTAAAATATATACTAGTATATTTCTTTTGCATTGAAAATATACTGATACAGAAACATCATAAATATTGTGTTTTATATCCTGAATTTCATACTTTTATTGAGCAGTTGGTTTACTACATAATTCTACAAAAACTTGGACAAGAACAAGGTTTTTGAATATTGTAATTCATTCAATATGATGACAATTGATTCGTCC
Unaligned ( gi|17 ): AAAAGCAAATAAAATCTTAAATATATTTTAAAATGCTTTTATCTTGTTCTTATTAGACAAAAATTATCCTTGTTATGGTCATTTTAGAAATATTATGTATATTAATTGTGAAATATTATGATATATTGTGTTTCATACTCTGAATTTCATACTTTCAGTGGGCAGTTGGCTTATTACGTAATTCTAGAAAAATTGTGACAAGAACAAAGTTTCTGAATATTGTAATTTATTCCTTT
Unaligned ( gi|20 ): AAATACAATGTGAAACCTATTGATGATTTTATTATGATATTAAGTCATGAGACAAACTTACTTTATCTAAAATATAACTTAATTAGCCTTAAGCTTTCTTGCAAAATCATTTCCTTAAGAATCTTAATTTGGATCATTGAAATTATACTGACACAGAAAAATTATATATATTTT
Unaligned ( gi|21 ): TCATACTTTCAGTGAGGAGTTGATTTATTACAAACTTCTACAATACATGGGACAAGATCAAAGTTCCTGGGTACTAGCAATGTATCTTCTGGGTCCTAGTATTGGTATTTTGCGTGAGTAACTAGGTATTGTATTTCCTGGGTACTATTATTTTGTAATTTTTATCCGAGGT
Unaligned ( gi|29 ): TAGTTTGAATTCATACTTTCAGTGAGCAGTTGGCTTTTTACATAAATCTAGAAAAGCTGGGACACGAACAAAGGTTCTGAATATTTATATTGTAGGACTAC
Unaligned ( gi|32 ): TAAGTTTATTTATTCATTTTTGTGCAAACTCACCAACTTATCTTGGTACAAAATAAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111
lowQualScore : 11 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111 11111111111111111111111111 222222222 55555555555555555555555555555 2222222 1111 111111 11111 3333333333333333333333333333333333333333333333333333333333333333333 2222222222222 1111111 555555555555555555555555555555555555555555 111111111111111111 11111111 999999999999999999999999999999999999999999999999999999999999999999 1 555555555555555555555555 111 1111 11111 2222222222222222222222222222222222222222222222222222222 111 333333333333333333 11111 1 1111
lowQualScore : 77 999 9999999999 5 1 5 5 1 11 66 3 1 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 22 88888888888888888888888888 2 1 1 2 2 22 666 4 111111111 33333333333333333333333333333 1111111 4 6666 9999 4 4 111111 00 4 55555 1 4444444444444444444444444444444444444444444444444444444444444444444 1 4 66 4 9999 4 4444444444444 9999 4 7777777 66 66 555555555555555555555555555555555555555555 888 999999999999999999 777 66666666 66 4 66 0 0 22 0 4 44 3 4 66 777 888888888888888888888888888888888888888888888888888888888888888888 888 66 5 5 0 1 2 66 4 1 4 999999999999999999999999 4 9999 1 66 5 666 0000 0 0 22222 1111111111111111111111111111111111111111111111111111111 4 1 66 5 66 888 0 000000000000000000 44444 77 5 1 8888 1 11
lowQualScore : .. ... .......... . . . . . .. .. . . ....................................................................................... ... .. .......................... . . . . . .. ... . ......... ............................. ....... . .... .... . . ...... .. . ..... . ................................................................... . . .. . .... . ............. .... . ....... .. .. .......................................... ... .................. ... ........ .. . .. . . .. . . .. . . .. ... .................................................................. ... .. . . . . . .. . . . ........................ . .... . .. . ... .... . . ..... ....................................................... . . .. . .. ... . .................. ..... .. . . .... . ..
lowQualScore : 99 111 8888888888 0 4 7 7 7 77 99 4 0 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 000 55 11111111111111111111111111 4 0 0 3 4 22 444 0 777777777 33333333333333333333333333333 4444444 4 9999 4444 4 4 000000 99 4 66666 0 8888888888888888888888888888888888888888888888888888888888888888888 0 4 11 4 4444 4 4444444444444 4444 4 6666666 99 99 888888888888888888888888888888888888888888 888 555555555555555555 888 11111111 11 4 66 9 9 99 6 0 77 2 0 33 000 999999999999999999999999999999999999999999999999999999999999999999 888 99 4 0 0 1 5 11 4 9 4 333333333333333333333333 4 9999 9 33 0 222 1111 4 8 33333 5555555555555555555555555555555555555555555555555555555 4 0 11 4 11 999 1 000000000000000000 33333 99 7 4 3333 7 33
consensus : ATACACAATAT--TGTA--ATTGTGCTCCTGA--T-AAT---TTACTG-TTCGT-C-AGTTTTCTACAAAACTCTTTGTAGT--ATTACTNT-----T------CC-------------------T--------AC------------------------TATTC--------------TATTTT---ATCAATTAAT--G--T--TT--C-AAT-----A---CTNTTCTTNCTAAANATAGGGCNACGGACTCTACAAAAAGTGAGCATTTT---TGC-ACAC-AA------AGTTCC-AG--------T-ATT---TAG-------GAGTAAA-T-----T-TT--A-TTGGAATTAACATGT----T-AACA-GATG-C----CATACCTGAAATA-TATT-----TGTAAATTGG---------------GTGT-----A-----TA----TA------TATAC--------A---------GCNAAGTAT-A--CTG-T----AA-CT-------------CTG----AA-AA----G--TTGAAA--ATAT--CA---T---T-CA----------GG--TGC-T-G--T--ATAC-CATTTC---TT--------CT--GTT---ATT---TT--------TCAAC--CAAA-TCGGAAACTGTAAATTTTGAAATAA-AGTGT-ATAAAAT-GC-TTTTACT---ACTAAGA-----------TG--AA---------------T-------------TC------------T-----TGGAT---TTCAC--CGAGC-AAATAA-TCTGTACAAAT--ACATGCAATCA-AATTTGACAC-AA-----A----A-CA----------CT-C--A-AAATCAT-GTA-T--ATTTTT---CAATTTAACCAACTTTTCTTGGT---T-ACAAAATAATGCG------AAGTA-AGCA-T----TA-TAAA---ATGCTACATAC-----------TG-TTTTGGAAAGCTGAAAGTGTC--TACCT--TACAGTGATGTTATTCTTGAAACT-GCATCTATT-A---AAA----C----AAGA-----TATCTGCTTCCATATT--AGGTT-AGTAG-AA-A-TTCCACCCTGATTGTGTTTTAG
Reference ( family-4141 ) : ATACACAATAT--TGTA--ATTGTGCTCCTGA--T-AAT---TTACTG-TTCGT-C-AGTTTTCTACAAAACTCTTTGTAGT--ATTACTNT-----T------CC-------------------T--------AC------------------------TATTC--------------TATTTT---ATCAATTAAT--G--T--TT--C-AAT-----A---CTNTTCTTNCTAAANATAGGGCNACGGACTCTACAAAAAGTGAGCATTTT---TGC-ACAC-AA------AGTTCC-AG--------T-ATT---TAG-------GAGTAAA-T-----T-TT--A-TTGGAATTAACATGT----T-AACA-GATG-C----CATACCTGAAATA-TATT-----TGTAAATTGG---------------GTGT-----A-----TA----TA------TATAC--------A---------GCNAAGTAT-A--CTG-T----AA-CT-------------CTG----AA-AA----G--TTGAAA--ATAT--CA---T---T-CA----------GG--TGC-T-G--T--ATAC-CATTTC---TT--------CT--GTT---ATT---TT--------TCAAC--CAAA-TCGGAAACTGTAAATTTTGAAATAA-AGTGT-ATAAAAT-GC-TTTTACT---ACTAAGA-----------TG--AA---------------T-------------TC------------T-----TGGAT---TTCAC--CGAGC-AAATAA-TCTGTACAAAT--ACATGCAATCA-AATTTGACAC-AA-----A----A-CA----------CT-C--A-AAATCAT-GTA-T--ATTTTT---CAATTTAACCAACTTTTCTTGGT---T-ACAAAATAATGCG------AAGTA-AGCA-T----TA-TAAA---ATGCTACATAC-----------TG-TTTTGGAAAGCTGAAAGTGTC--TACCT--TACAGTGATGTTATTCTTGAAACT-GCATCTATT-A---AAA----C----AAGA-----TATCTGCTTCCATATT--AGGTT-AGTAG-AA-A-TTCCACCCTGATTGTGTTTTAG
gi|1 : ATGCACAATAT--TGTACCATTGTGCTCCTGA--T-A-T---TTAATG-TTCAT-C-AGTTTTCTACAAAACTCTTGGTAGT--ATTACTAT-----T------CC-------------------T--------AC------------------------TATTC--------------TGTTTC---GTCAGTTGAT--G--T--TT--C-AAC-----A---CTTTTCTTACTAAGAATAGGACAACAAACACTGCGAAATGTGAACATTTC---TGC-ACAC-AA------AGTTCC-AG--------TGATT---TAG-------GAGTAAA-T-----T-TTC-A-TTGAAATTAACATGA----T-AACA-GATG-T----CATACCTGGAATA-TATT-----TGTAAATT-T---------------GTGT-----A------A----TA------TACAC--------A---------ACTAAGTGT-A--TTA-C----AA-CC-------------CTG----AA-AAG---G--TTGAAA--ATAT--CA---T---C-CA----------AG--TGC-TGG--TCAATGC-CATTTC---TT--------CT--GTA---ATT---TT--------TCAAC--CAAA-TCAGAAGTTGTAAATTTTGTAATAA-AGTTT-ATAAAAT-GC-TTTTACT---ACTAAGA-----------TG--AA---------------T-------------TC------------T-----TGGAT---TTCAC--CAAAC-AAATGATTTTTTACAAAT--ACATGCAATTA-AATTTAACACTAA-----A----A-CA----------CC-CTTA-AAATCAT-GTA-T--ATTTTT---CAATCTCACCAGCTTTTCTCCAT---T-A-AAAATGATGCGTGTTATATATA-TACA-TGTAATA--AAA---ATGTTACATATAATAAAAATAATG-TTTTGGAAAGCTGAAAATATC--TACCT--TTCAGTGATGTTATTCTTGAAACT-GTATCTATT-A---AAA----C----AAGA-----GGTCTGCTTTCATATT--AGGTT-AATAG-AA-----CCAGCCAGATTCTGTTCTAG
gi|10 : TT---TT--------TGAACGGCACA-TCGGAAACTG---ATTTTGAAATAA-------------T-GT-CTTTACT---ACTGAGA-----------TG--GA---------------
gi|10 : T-T--A-AATTTAT-TTA-TTCATTTTTTGGCAATT-AACCAACTTTTCCTGGT---A-ACAAGATAATGTA------AAGCA---C--T----TA-T-------TCCTAT-TAC-----------TG-CTTCGAAAAGC-------GTC--TACCT--AACAGTGATGGTATACTTGAAACT-GTGTCTATT-A---AAGGAACC----AAGA-----TATCTGCTTCCATATT--AGGTA-AGTAGCGA-A-TTCCACACAGATCTTATTTTAGaatgaaatagataatttgttttaaatttatttattcattttttggcaattaaccaacttttcctggtaacaagataatgtaaagcacttattcctattactgcttcgaaaagcgtctacctaacagtgatggtatacttgaaactgtgtctattaaaggaaccaagatatctgcttccatattaggtaagtagcgaattccacacagatcttattttagttttgatgccaatcgaaagattttgtcacaaactcacaatgaa
gi|12 : tttttgaacggcacatcggaaactgattttgaaataatgtctttactactgagatggaaatgaaatagataatttgttTACACAATAT--GGTA---TTGTGCTTCTGA--T-AAT---TTACTG-TTCAT-C-AGTTTTCTACTAAATT--TTGTAGT--ATTACTTT-----TTCAAGTCC-------------------T--------AA------------------------AAATGAAAAAAAAAGAAAATATTTTGTCATCAATTAAT--GC-T--TT--T-GAT-----A---CTTTTCTAACTAAAATTAGGGCCACAGACACTACAACAAGTGAGCATTGT---TGC-ACAC-AA------AGTTCCAAG--------T-GTCTGATAGTCATACTAAGTTAA-T-----T-TC--A-TTGGAATTAACATGT----T-AACA-AATG-C----CATGCCT-------TATT-----TACAAttttgatgccaatcgaaagattttgtcacaaactcacaatgaa
gi|13 : acggatttt--------TCAAC--CAAT-TTAATATCTGTAAAGTTTGAAACAA-AGTG--ATAA--C-GA-TCTTACT---ACTAAGA-----------TA--AA---------------TATCAAAAACTTTTTC------------T-----TGGAT---TTGAC--CAAGC-CAATAA-TTTGTACAAATGTACTTGCAATCA-AATTTGAAAC-AA-----A-------------------T-C--ATGAATAAT-TTT-T---TTCTT---CAATTTATCCAACTGTTCTTGAT---T-ACAAAATAATGCT------ATGTA-AGTACT----TT-TAAA---ATGTTTC--AC-----------TG-TTTTGGAAAGCTCAAAGTGTCTATACTT--TACAGTGATGCTACTCTTGAGAccatatacaata
gi|14 : ATACACAATAT--TGTG--ATTGTGCTCCTGA--TCAATACATTACTG-TTTGT-C-AGCTTTCTGCAAAGCTCTTTGTAG--------TGC-----T------CC-------------------TAAAGATAAACATGAAAATA---------------TATTC--------------TATTTT---ATGTAT--AT---------------AT-----A---CTTTTCTTGCTAAAAATAAGGCTACAAACTCGACAAAAAGCAAGTATATT---Ttatttgatcttacattt
gi|15 : atgaaatgttagaatttaaatggaagacaaatatacacatgtacttattcaaaatttctattttgtctatatctgaaaatgctacgctgtttgtTACACAACAT--TGTA--TATATACTCCTGA--T-AAT---TTACTG-TTCAT-C-TGTTTTCTACAAAACT-TTTGGAAT--ATTACTTT-----T------CCAAACCCTAAACAAAGAAAAT--------AC------------------------TACTC--------------TATTCT---ATCAATCAAT--A--T--TT--CAAATTAAAAA---CTTTTCTCAGTTAATAAAGAAAGACGGAC-CTATAAAAA-TGAGCATTTT---TGC-ACAT-TA------AATTCC-AAT-------T-ATT---TA
gi|16 : aagtttctgaattatttatgttttaggaactctgcattcgAAGTAT-T--CTG-C----AA-CC-------------CAG----AA-AA----G--TTGAAA--ATAT--CA---T---T-CATGTGTATTTGGG--TGC-T-G-----ATAC-CATTTC---TT--------TT--GTT---ATT---TTGTTAATTTTCTAC--CAAA-TTGGAAACTGTAAATTTTGAAATAA-AGTGT-ATGAAAT-GC-TTTTACA---ACTAAGA-----------TG--AAAAGTAAATACCTAT-T-------------TC------------T-----TGG-T---TTCACTTC-AGC-AAAT---------CAAAT--ACATGCAATCA-AGTTTGACAC-AATTCACA----A-C-----------CT-C--A-AAATCAT-Gata
gi|18 : a-------------------T--------AC------------------------TG--C--------------TGTTTT---AT-AATTTAT--G--TATTT--G-AAT-----A---CCATTTTCCCTAAGTATAGAGCAACGCACTCTACAAAAGATGAGCATTTC---TA--ACAC------------TCT-GA--------T-ATC---ATG-------GAGTACA-TACA--T-TT----TTTGAATTTACATGT----TCAATAGGATGTT----CATACCTG-AATATTATTC----CGTAAATT
gi|19 : taaagaataaaaagaaaataTTTTCTTGGT---T-ATGAAATAACAC-------------AGTG-T----T--TAA-----TGGTATAT-------------TA-TTTTGGTAAGCTGAAAGTGTT--TACAC--TACAGTGATGTTATTCTTGAAACT-GCATATATT-A---AAG----CAAATAAGA-----TGTCGGCTTCCATATA--AAATT-AGTAGTAA-T-TTCTAGCCTGATTGCGTTTTatttgtca
gi|2 : TACATAGTAT--TGTA--AATGCGCTCTTGA--T-GAT---TTACTG-TTCGT-T-AGTTTT-TACACCATTTTTTGTAGC--ATTTCTAT-----T------CC-------------------gataatctgtacat
gi|2 : atttcctaatgctcctgtttttatctagaatttgataactattaatatttcttgcaaaattattttttcaaaaattatccttgttatggtcattgaaattatgccagcataaaaatattatgtatatatgcagtgcttcctagtctcaatttcacactttcagtgagcagttggcttattacaaaattctagaaaaaatggaaaaagaaaacagttctgaatattcaattgtaggtctatgaacttgactgtg------------------------TATTA--------------AATTTT---ATCAATTACT--G--T--TT--------------------TCTTCCTATAACTAGGGCTAGGGCCTGTACAAAAAGTGAGAATTTT---TGC-ACAC---------AGTTGC-A-----------ATT-----A-------GAGTAAATT-----T-TT--A-CTGGAATTAATGTGTTAAAT-AACA-TATG-CTATGTATACCTGAAATA-TAAA-----TGTAaagtcctaaaaataaaaagagaagataggagtatattaaattttatcaattactgttttcttcctataactagggctagggcctgtacaaaaagtgagaatttttgcacacagttgcaattagagtaaatttttactggaattaatgtgttaaataacatatgctatgtatacctgaaatataaatgtattcaaccaatttaatatctgtaaagtttgaaa
gi|22 : atttcctaatgctcctgtttttatctagaatttgataactattaatatttcttgcaaaattattttttcaaaaattatccttgttatggtcattgaaattatgccagcataaaaatattatgtatatatgcagtgcttcctagtctcaatttcacactttcagtgagcagttggcttattacaaaattctagaaaaaatggaaaaagaaaacagttctgaatattcaattgtaggtctatgaacttgactgtgtacatagtattgtaaatgcgctcttgatgatttactgttcgttagtttttacaccattttttgtagcatttctattccaagtcctaaaaataaaaagagaagataggagtaGTAT-A--CTG-T----AA-CT-------------CTG----AA-AA----G--TTGAAA--ATAT--CA---C---T-TA-----------G--TGC-T----C--A-AA-CATTTC---TT--------CTTAATTTC-GTT---TC--------TTAAT--CAAA-TC-GAAACTGTACAGTTTGAA-----------ATAAAAT-GC-TTTCACT---CCTAAGA-----------TGCAAA---------------T-------------TC------------ttcaaccaatttaatatctgtaaagtttgaaa
gi|23 : aattaatattttaagaaaacTTTTCTTGGT---T-ACAAAATAATGCG------AAGTACAATA-TG---TACTAAATAAATGT--CATAC-----------CG-CTCTGGAATATTGAAAGTGTC--TACTT--TATAGTGTTGTTATTTTTTATACT---ATCTATT-----------------TTTA-----TATTTGCTTTCATATT--AGGTA-GGTAG-AA-A-ATCCACCCCTATTGTGCTTTAGgatacgttttcttggattcc
gi|24 : -------GAGTAAA-G-----TGTT--AATTGAAATTGACATAT----T-AACA-AATG-C----CATATCTAAAATA-TAAT-----TGTAAATTGG---------------TTGC-----------CA----TA------TATAC--------T---------GTTATGTAC-A--AAGTT----AA-TT-------------CTA----TA-AT----C--CTGAAG--ATATCACA---T---TGTAT---------GG--TGC-G-G--T---TAT-CATTTC---TT--------CT--GTT---ATT---T
gi|25 : -------------------T--------AA------------------------TATTC--------------CATTTT---ATCAATAAGT--GATT--TT--C-AAT-----A---CTGCTCGTCCTAAACATAGGACTAAGGATGCTAATATTAGACAGCA-TTT---TGT-ACACAAA------AGTTCCAAG--------T-AT
gi|26 : gttgtagtatgacatttccgaggtctaaaattaaaaataaaTAT-----------TG-TTTTGGAAAGCCGAAAGCGTC--TAC-T--TACAGCTACGTTATTCTTGAACCTTGCAAC---------AAA----T----AAGA-----TTTCTGCGTCCATATT--AGGTT-AGTTG-AA-ATTTCCATCCTGATTGTGTTTAAG
gi|27 : TACACAATATATTGTA--ATTATGTTTCTGA--T-GTT---TCACTGCTTCATACGAGTTTTC-AT-AAACTC-TTATAGT--ATT-CTTTAACAGT------CC-------------------T--------Actgatagatattatatctacacatat
gi|28 : tcatttgattgtggagctacgggttctgctttgTAGGGCTACGGACTCTACA--------------T---TGT-ACAC-AATATTGTAGTTAC-AA--------T-ATT---------------GT-AG-T-----T-CTCGA-TTAGAATTAAaaaaa
gi|3 : gcaagaacactagtaatgtaattcattcacttaattt------------------------TATTC--------------TATTTT---ATCAATTTAT--G--T--TTTCC-AAA-----A---AAATTCTGGCTGAAAATA----------CTTTACAAAAACTTATCAAATTGCATAT-ATAC-AATGT---AGTACC-A-----------ATT---T-G-------GAGTAAA-T-----T-TT--A-TTGGAATGAACATGT----T-AACA-GATG-T----CGTACC--AAATA-TATTATATTTGTAAATTGGTTGTCGTACATGTACATGT-----A-----TA----TACAACAATATAC--------AATATTTTCAGCAAAATATTA--CTA-T----AA-CC-------------CTG----AA-AA----G--TAGAAA--ATAT--TAAACT---T-TA----------GT--TGC-T-G-----ATGT-CATTAC---TT--------CT--GTC---ATT---TC--------TCAAC--TGAAGTCGGGAACTGTAAATTTTGAAATGA-AGTGT-ATAAAAC-GC-TCTTACA---ACTAAGA-----------TGAAAA---------------TTATCA--------TT------------T-----TGGAT---TTTAC--CGAGC-AAATAA-TTTGTAAAATT--ACACGCAATCA-AATT-------AA-----A----A--A----------TTGC--A-GAATTGT-TTA-G--A--------AAATTTAACGAACCTCTC--------C-ACAAAATAttgc
gi|30 : tgtaatattacttttccaagtcctagagataaataagaatataAAAT---CATG---TCACAATT-----C-AA-----A----A-C-----------CT-C--A-AAATCAT-GTA-T---TTTTT---CAATTACACCAACTTATTTTGGT---C-ATTGAATAAAGCA------Ataccattaaat
gi|31 : A---ATGCTA--TAC-----------TG-TTCTGGAGAACTGAAAGTGTC--TACTT--TACAGCGATGTTATTTTTGACACtggcttggtt
gi|4 : tgaagtacttATGT----T-AACA-GATA-T----AATACCTGAAATA-TATT------GTT--TTGGTATC-----------ATGT-----A-----TA----CAACCG--TGTAC--------AATATTTTAAGCAAAGTAT-ATACTG-T----AA-TT-------------CTG----AATAA----G--TTGAAA--ATAT--C----------TA----------GG--TAC-T-C--T---TAC-CATTTC---TTGGGTCATTTC--GTT---ATT---TT--------TCAAC--CAAA-TCGGAAACT----ATTGTGAAATAA-AATGT-ATAAAAT-TCTTTTTATT---ACTAAGA-----------TA--AAAATTAAATACGCTATT-------------CC------------T-----TGGAT---TTCAC--CGTGCAAAATAA-TCTGTACAAAT--AAATGCAGTCA-AATGTGCCAC-AA-----ATC--A-CACC--------CT-C--T-AAATAAT-ATA-T---TTTTG---CAATTTATACAA-TTTTTTTGGT---A-ACAAAAT--TGCA------AAG---------------------------TACATG-------------G-TTTTGGTTTGCTGAAAGTGTA--TTCTT--TACACTGATGTTTTTCTTGGATCT---ATCTATTCAAACAAA----C----AAGA-----TATCTGCTTTCATATTTGATATTAAGTAG-AACA-TTCCACCCTCATTGTGTTTCA
gi|5 : TTGTAGTCAATTACTCC-----TAATAA-TC-------------------C--------AC------------------------TGTTCATC-----------TGTTTTC--AACAA--AATTCA--T--TG--T-AGT-----ATTCCTGTTCTTGCTAAACATACAGCTACATACTCCACAAAAAGAGAGCATTTT---TTCGAAAG-AA------CGTTCC-A------------TT---T---------GA-TAAA-TACGGAT-TT----TTGGATTTAAGATGT----T-AACG-GATG-C----CATACCAGAAATA-TATT-----TGTGAATTAG---------------GCCT-----AGTTTTCA----AA------TATAC--------A---------ACTATGTAT-G--GTG-TTTTAAG-CTAAATATTCAGTAACTGTAGCAA-AAACATG--TTGAAA--ATA---CA---TGTAT-CA----------CGCTTGCAT-GCTC--ATACGAATTTTATGTC--------CT--ATC---ATTATATT--------TCAAC--CAAA-T-------TGTAAAATTC-AAATAA-AATGT-ACAAAAT-G--TTTTACA---ACTAAGAAAATTAAATACTT--AA---------------T-------------TC------------T-----TGGAA---TTCAC--CGTGC-ACATAT-TCTTTACAAAC--ACATGCAGTCA-AACTTGACAC-AG-----A----T-CA----------Caataaatattt
gi|6 : actctactctgtacacgataTACACAATAT--TGTA--GTTAGG-----------------TTACTG-TTCAT-C-AGATTTCTAAAAAATTCATTGCAAT--ATTACATT-----T------TC-------------------T--------ACCACTAAAAATAAATAAGAGAATAATACTC--------------TATTTT---ATCAATTAAT--G--T--TTT-C-AAT-----A---CTGCTCTTAATAAACATAGGGCAATGGACTCTACCAAAAGAGAGCATTTT---TGC-ATAC-AA------CGTTCA-CGTTACCTTAT-ATC---GAG-------GAGTAAATT-----T-TT--A-TTGGAATTAACATGT----A-AACA-GATG-C----CATATCTGAAATA-CATT-----TGTAAATTGG---------------GTGTCAAAGA-----TACATCCA------TATACAATATTTAA---------GCAAAGTAT-A--CTG-T----AA-CT-------------TGG----AA-ac
gi|7 : tatgttttatagtttgaatttcatactttcattctagaaaaactgggacaaaaacaaagtttctgaatattataagtcatttaattttggagctacggactctactgtgtatAAATA--A--CTG-T----AAATT-------------CTG----AA-AA----AGTTTGAAATTATAC--TA---T---T--A----------TT--TAC-T-C--T--A----CTTTTC---TT--------TTC-ATTCGTAAT---TT--------TCAGG--C-----------CT-----TTTTTAACTACTAGTGTTATAAAGTCGT-TTTT-CTTTTACTAATA-----------TG--AA---------------TAA-----------TCAGATACTTTTATC-----TGGAT---TTCAC--CAAGC-ATATAACTTTTTACAAAT--TCGTGCGG-CA-A--TTGACAC-AA-----ATTTCACCA----------CT-C--A-AAA--ATAGTATT--ATGTGT----AATTTAA
gi|8 : atacaacattatggaatatttcaagcaagtTA--ACTATGCTCCTGAGCT-AAT---TTACTG-Tgatttcacttataacaattaaattatgttttattataatttaagtcttggtttatcatgtatccttgaaattctatgtactaaatcaaacaactttcctagctggtggatagaaaatgccacttttagccgtcatcatgtttacgttgaatgacttccattact
gi|9 : caaataaattcacgccgaaatacaatcgggtgaactattttaattatctctatttttgcgcatatttatagacaaaaagtaaataaatttttgaaatcttttataattttacttggttcttatgagattaaactaagtttatctaaaaattactcggactaccgttaaccctttcttgcaaaatcaatttttaagaatatctttgttatagtcgaaatttactacacaaaatagttatgtatatattgtgttttaagtcatttctactttcagtagcagttgatgtattacataattcctagaaaaattggagtatgattaacaaagtttctggatgttgtaatttattcatttattttgggctatcggattcttacgtgaactataacatatttagtAAATTTTTCCACAA-AGTTT-ATAA-----T-CTCTAGT---TCAAGGA-----------GT--AA---------------T-------------TC------------TATTACCGGATAGTTTCAT--CTAGA-AAATAA-TCTGTACAAAT--ATATGCAATCA-TATTTGACAT-AA-----ACCATA-CACATGTATACTCT-C----ATATCAT-AAA-T--ATTATC---TAATTTAACAAACTTTTCGTGGTACGTAACAAACTAGAGCA------AAGTA---C--T----T-----A---ATGCT--GTAC-----------TGTTTTTGGAAAGCAG-AAGTGTC--TAGCTACTTCAGTGGTGTTCTTCTTGAAACT-TGATTCATT-A---CAA----C-----AGACAATTTATCTGCTTCCTTATT--GTGTT-AGTAG-AA-A---CTATCCTCAATGGGTTTTA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TAATGATTTTTATTTTGTTCTTGTGAAACAGACTTATTTTATCTAAAAACATTTCTTGATTACCATTAACTTTATTTTCTTACTAAAGCATTTATATCTAAAATATATACTAGTATATTTCTTTTGCATTGAAAATATACTGATACAGAAACATCATAAATATTGTGTTTTATATCCTGAATTTCATACTTTTATTGAGCAGTTGGTTTACTACATAATTCTACAAAAACTTGGACAAGAACAAGGTTTTTGAATATTGTAATTCATTCAATATGATGACAATTGATTCGTCC
Unaligned ( gi|17 ): AAAAGCAAATAAAATCTTAAATATATTTTAAAATGCTTTTATCTTGTTCTTATTAGACAAAAATTATCCTTGTTATGGTCATTTTAGAAATATTATGTATATTAATTGTGAAATATTATGATATATTGTGTTTCATACTCTGAATTTCATACTTTCAGTGGGCAGTTGGCTTATTACGTAATTCTAGAAAAATTGTGACAAGAACAAAGTTTCTGAATATTGTAATTTATTCCTTT
Unaligned ( gi|20 ): AAATACAATGTGAAACCTATTGATGATTTTATTATGATATTAAGTCATGAGACAAACTTACTTTATCTAAAATATAACTTAATTAGCCTTAAGCTTTCTTGCAAAATCATTTCCTTAAGAATCTTAATTTGGATCATTGAAATTATACTGACACAGAAAAATTATATATATTTT
Unaligned ( gi|21 ): TCATACTTTCAGTGAGGAGTTGATTTATTACAAACTTCTACAATACATGGGACAAGATCAAAGTTCCTGGGTACTAGCAATGTATCTTCTGGGTCCTAGTATTGGTATTTTGCGTGAGTAACTAGGTATTGTATTTCCTGGGTACTATTATTTTGTAATTTTTATCCGAGGT
Unaligned ( gi|29 ): TAGTTTGAATTCATACTTTCAGTGAGCAGTTGGCTTTTTACATAAATCTAGAAAAGCTGGGACACGAACAAAGGTTCTGAATATTTATATTGTAGGACTAC
Unaligned ( gi|32 ): TAAGTTTATTTATTCATTTTTGTGCAAACTCACCAACTTATCTTGGTACAAAATAAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111
lowQualScore : 11 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111 11111111111111111111111111 222222222 55555555555555555555555555555 2222222 1111 111111 11111 3333333333333333333333333333333333333333333333333333333333333333333 2222222222222 1111111 555555555555555555555555555555555555555555 111111111111111111 11111111 999999999999999999999999999999999999999999999999999999999999999999 1 555555555555555555555555 111 1111 11111 2222222222222222222222222222222222222222222222222222222 111 333333333333333333 11111 1 1111
lowQualScore : 77 999 9999999999 5 1 5 5 1 11 66 3 1 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 22 88888888888888888888888888 2 1 1 2 2 22 666 4 111111111 33333333333333333333333333333 1111111 4 6666 9999 4 4 111111 00 4 55555 1 4444444444444444444444444444444444444444444444444444444444444444444 1 4 66 4 9999 4 4444444444444 9999 4 7777777 66 66 555555555555555555555555555555555555555555 888 999999999999999999 777 66666666 66 4 66 0 0 22 0 4 44 3 4 66 777 888888888888888888888888888888888888888888888888888888888888888888 888 66 5 5 0 1 2 66 4 1 4 999999999999999999999999 4 9999 1 66 5 666 0000 0 0 22222 1111111111111111111111111111111111111111111111111111111 4 1 66 5 66 888 0 000000000000000000 44444 77 5 1 8888 1 11
lowQualScore : .. ... .......... . . . . . .. .. . . ....................................................................................... ... .. .......................... . . . . . .. ... . ......... ............................. ....... . .... .... . . ...... .. . ..... . ................................................................... . . .. . .... . ............. .... . ....... .. .. .......................................... ... .................. ... ........ .. . .. . . .. . . .. . . .. ... .................................................................. ... .. . . . . . .. . . . ........................ . .... . .. . ... .... . . ..... ....................................................... . . .. . .. ... . .................. ..... .. . . .... . ..
lowQualScore : 99 111 8888888888 0 4 7 7 7 77 99 4 0 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 000 55 11111111111111111111111111 4 0 0 3 4 22 444 0 777777777 33333333333333333333333333333 4444444 4 9999 4444 4 4 000000 99 4 66666 0 8888888888888888888888888888888888888888888888888888888888888888888 0 4 11 4 4444 4 4444444444444 4444 4 6666666 99 99 888888888888888888888888888888888888888888 888 555555555555555555 888 11111111 11 4 66 9 9 99 6 0 77 2 0 33 000 999999999999999999999999999999999999999999999999999999999999999999 888 99 4 0 0 1 5 11 4 9 4 333333333333333333333333 4 9999 9 33 0 222 1111 4 8 33333 5555555555555555555555555555555555555555555555555555555 4 0 11 4 11 999 1 000000000000000000 33333 99 7 4 3333 7 33
consensus : ATACACAATAT--TGTA--ATTGTGCTCCTGA--T-AAT---TTACTG-TTCGT-C-AGTTTTCTACAAAACTCTTTGTAGT--ATTACTNT-----T------CC-------------------T--------AC------------------------TATTC--------------TATTTT---ATCAATTAAT--G--T--TT--C-AAT-----A---CTNTTCTTNCTAAANATAGGGCNACGGACTCTACAAAAAGTGAGCATTTT---TGC-ACAC-AA------AGTTCC-AG--------T-ATT---TAG-------GAGTAAA-T-----T-TT--A-TTGGAATTAACATGT----T-AACA-GATG-C----CATACCTGAAATA-TATT-----TGTAAATTGG---------------GTGT-----A-----TA----TA------TATAC--------A---------GCNAAGTAT-A--CTG-T----AA-CT-------------CTG----AA-AA----G--TTGAAA--ATAT--CA---T---T-CA----------GG--TGC-T-G--T--ATAC-CATTTC---TT--------CT--GTT---ATT---TT--------TCAAC--CAAA-TCGGAAACTGTAAATTTTGAAATAA-AGTGT-ATAAAAT-GC-TTTTACT---ACTAAGA-----------TG--AA---------------T-------------TC------------T-----TGGAT---TTCAC--CGAGC-AAATAA-TCTGTACAAAT--ACATGCAATCA-AATTTGACAC-AA-----A----A-CA----------CT-C--A-AAATCAT-GTA-T--ATTTTT---CAATTTAACCAACTTTTCTTGGT---T-ACAAAATAATGCG------AAGTA-AGCA-T----TA-TAAA---ATGCTACATAC-----------TG-TTTTGGAAAGCTGAAAGTGTC--TACCT--TACAGTGATGTTATTCTTGAAACT-GCATCTATT-A---AAA----C----AAGA-----TATCTGCTTCCATATT--AGGTT-AGTAG-AA-A-TTCCACCCTGATTGTGTTTTAG
Reference ( family-4141 ) : ATACACAATAT--TGTA--ATTGTGCTCCTGA--T-AAT---TTACTG-TTCGT-C-AGTTTTCTACAAAACTCTTTGTAGT--ATTACTNT-----T------CC-------------------T--------AC------------------------TATTC--------------TATTTT---ATCAATTAAT--G--T--TT--C-AAT-----A---CTNTTCTTNCTAAANATAGGGCNACGGACTCTACAAAAAGTGAGCATTTT---TGC-ACAC-AA------AGTTCC-AG--------T-ATT---TAG-------GAGTAAA-T-----T-TT--A-TTGGAATTAACATGT----T-AACA-GATG-C----CATACCTGAAATA-TATT-----TGTAAATTGG---------------GTGT-----A-----TA----TA------TATAC--------A---------GCNAAGTAT-A--CTG-T----AA-CT-------------CTG----AA-AA----G--TTGAAA--ATAT--CA---T---T-CA----------GG--TGC-T-G--T--ATAC-CATTTC---TT--------CT--GTT---ATT---TT--------TCAAC--CAAA-TCGGAAACTGTAAATTTTGAAATAA-AGTGT-ATAAAAT-GC-TTTTACT---ACTAAGA-----------TG--AA---------------T-------------TC------------T-----TGGAT---TTCAC--CGAGC-AAATAA-TCTGTACAAAT--ACATGCAATCA-AATTTGACAC-AA-----A----A-CA----------CT-C--A-AAATCAT-GTA-T--ATTTTT---CAATTTAACCAACTTTTCTTGGT---T-ACAAAATAATGCG------AAGTA-AGCA-T----TA-TAAA---ATGCTACATAC-----------TG-TTTTGGAAAGCTGAAAGTGTC--TACCT--TACAGTGATGTTATTCTTGAAACT-GCATCTATT-A---AAA----C----AAGA-----TATCTGCTTCCATATT--AGGTT-AGTAG-AA-A-TTCCACCCTGATTGTGTTTTAG
gi|1 : ATGCACAATAT--TGTACCATTGTGCTCCTGA--T-A-T---TTAATG-TTCAT-C-AGTTTTCTACAAAACTCTTGGTAGT--ATTACTAT-----T------CC-------------------T--------AC------------------------TATTC--------------TGTTTC---GTCAGTTGAT--G--T--TT--C-AAC-----A---CTTTTCTTACTAAGAATAGGACAACAAACACTGCGAAATGTGAACATTTC---TGC-ACAC-AA------AGTTCC-AG--------TGATT---TAG-------GAGTAAA-T-----T-TTC-A-TTGAAATTAACATGA----T-AACA-GATG-T----CATACCTGGAATA-TATT-----TGTAAATT-T---------------GTGT-----A------A----TA------TACAC--------A---------ACTAAGTGT-A--TTA-C----AA-CC-------------CTG----AA-AAG---G--TTGAAA--ATAT--CA---T---C-CA----------AG--TGC-TGG--TCAATGC-CATTTC---TT--------CT--GTA---ATT---TT--------TCAAC--CAAA-TCAGAAGTTGTAAATTTTGTAATAA-AGTTT-ATAAAAT-GC-TTTTACT---ACTAAGA-----------TG--AA---------------T-------------TC------------T-----TGGAT---TTCAC--CAAAC-AAATGATTTTTTACAAAT--ACATGCAATTA-AATTTAACACTAA-----A----A-CA----------CC-CTTA-AAATCAT-GTA-T--ATTTTT---CAATCTCACCAGCTTTTCTCCAT---T-A-AAAATGATGCGTGTTATATATA-TACA-TGTAATA--AAA---ATGTTACATATAATAAAAATAATG-TTTTGGAAAGCTGAAAATATC--TACCT--TTCAGTGATGTTATTCTTGAAACT-GTATCTATT-A---AAA----C----AAGA-----GGTCTGCTTTCATATT--AGGTT-AATAG-AA-----CCAGCCAGATTCTGTTCTAG
gi|10 : TT---TT--------TGAACGGCACA-TCGGAAACTG---ATTTTGAAATAA-------------T-GT-CTTTACT---ACTGAGA-----------TG--GA---------------
gi|10 : T-T--A-AATTTAT-TTA-TTCATTTTTTGGCAATT-AACCAACTTTTCCTGGT---A-ACAAGATAATGTA------AAGCA---C--T----TA-T-------TCCTAT-TAC-----------TG-CTTCGAAAAGC-------GTC--TACCT--AACAGTGATGGTATACTTGAAACT-GTGTCTATT-A---AAGGAACC----AAGA-----TATCTGCTTCCATATT--AGGTA-AGTAGCGA-A-TTCCACACAGATCTTATTTTAGaatgaaatagataatttgttttaaatttatttattcattttttggcaattaaccaacttttcctggtaacaagataatgtaaagcacttattcctattactgcttcgaaaagcgtctacctaacagtgatggtatacttgaaactgtgtctattaaaggaaccaagatatctgcttccatattaggtaagtagcgaattccacacagatcttattttagttttgatgccaatcgaaagattttgtcacaaactcacaatgaa
gi|12 : tttttgaacggcacatcggaaactgattttgaaataatgtctttactactgagatggaaatgaaatagataatttgttTACACAATAT--GGTA---TTGTGCTTCTGA--T-AAT---TTACTG-TTCAT-C-AGTTTTCTACTAAATT--TTGTAGT--ATTACTTT-----TTCAAGTCC-------------------T--------AA------------------------AAATGAAAAAAAAAGAAAATATTTTGTCATCAATTAAT--GC-T--TT--T-GAT-----A---CTTTTCTAACTAAAATTAGGGCCACAGACACTACAACAAGTGAGCATTGT---TGC-ACAC-AA------AGTTCCAAG--------T-GTCTGATAGTCATACTAAGTTAA-T-----T-TC--A-TTGGAATTAACATGT----T-AACA-AATG-C----CATGCCT-------TATT-----TACAAttttgatgccaatcgaaagattttgtcacaaactcacaatgaa
gi|13 : acggatttt--------TCAAC--CAAT-TTAATATCTGTAAAGTTTGAAACAA-AGTG--ATAA--C-GA-TCTTACT---ACTAAGA-----------TA--AA---------------TATCAAAAACTTTTTC------------T-----TGGAT---TTGAC--CAAGC-CAATAA-TTTGTACAAATGTACTTGCAATCA-AATTTGAAAC-AA-----A-------------------T-C--ATGAATAAT-TTT-T---TTCTT---CAATTTATCCAACTGTTCTTGAT---T-ACAAAATAATGCT------ATGTA-AGTACT----TT-TAAA---ATGTTTC--AC-----------TG-TTTTGGAAAGCTCAAAGTGTCTATACTT--TACAGTGATGCTACTCTTGAGAccatatacaata
gi|14 : ATACACAATAT--TGTG--ATTGTGCTCCTGA--TCAATACATTACTG-TTTGT-C-AGCTTTCTGCAAAGCTCTTTGTAG--------TGC-----T------CC-------------------TAAAGATAAACATGAAAATA---------------TATTC--------------TATTTT---ATGTAT--AT---------------AT-----A---CTTTTCTTGCTAAAAATAAGGCTACAAACTCGACAAAAAGCAAGTATATT---Ttatttgatcttacattt
gi|15 : atgaaatgttagaatttaaatggaagacaaatatacacatgtacttattcaaaatttctattttgtctatatctgaaaatgctacgctgtttgtTACACAACAT--TGTA--TATATACTCCTGA--T-AAT---TTACTG-TTCAT-C-TGTTTTCTACAAAACT-TTTGGAAT--ATTACTTT-----T------CCAAACCCTAAACAAAGAAAAT--------AC------------------------TACTC--------------TATTCT---ATCAATCAAT--A--T--TT--CAAATTAAAAA---CTTTTCTCAGTTAATAAAGAAAGACGGAC-CTATAAAAA-TGAGCATTTT---TGC-ACAT-TA------AATTCC-AAT-------T-ATT---TA
gi|16 : aagtttctgaattatttatgttttaggaactctgcattcgAAGTAT-T--CTG-C----AA-CC-------------CAG----AA-AA----G--TTGAAA--ATAT--CA---T---T-CATGTGTATTTGGG--TGC-T-G-----ATAC-CATTTC---TT--------TT--GTT---ATT---TTGTTAATTTTCTAC--CAAA-TTGGAAACTGTAAATTTTGAAATAA-AGTGT-ATGAAAT-GC-TTTTACA---ACTAAGA-----------TG--AAAAGTAAATACCTAT-T-------------TC------------T-----TGG-T---TTCACTTC-AGC-AAAT---------CAAAT--ACATGCAATCA-AGTTTGACAC-AATTCACA----A-C-----------CT-C--A-AAATCAT-Gata
gi|18 : a-------------------T--------AC------------------------TG--C--------------TGTTTT---AT-AATTTAT--G--TATTT--G-AAT-----A---CCATTTTCCCTAAGTATAGAGCAACGCACTCTACAAAAGATGAGCATTTC---TA--ACAC------------TCT-GA--------T-ATC---ATG-------GAGTACA-TACA--T-TT----TTTGAATTTACATGT----TCAATAGGATGTT----CATACCTG-AATATTATTC----CGTAAATT
gi|19 : taaagaataaaaagaaaataTTTTCTTGGT---T-ATGAAATAACAC-------------AGTG-T----T--TAA-----TGGTATAT-------------TA-TTTTGGTAAGCTGAAAGTGTT--TACAC--TACAGTGATGTTATTCTTGAAACT-GCATATATT-A---AAG----CAAATAAGA-----TGTCGGCTTCCATATA--AAATT-AGTAGTAA-T-TTCTAGCCTGATTGCGTTTTatttgtca
gi|2 : TACATAGTAT--TGTA--AATGCGCTCTTGA--T-GAT---TTACTG-TTCGT-T-AGTTTT-TACACCATTTTTTGTAGC--ATTTCTAT-----T------CC-------------------gataatctgtacat
gi|2 : atttcctaatgctcctgtttttatctagaatttgataactattaatatttcttgcaaaattattttttcaaaaattatccttgttatggtcattgaaattatgccagcataaaaatattatgtatatatgcagtgcttcctagtctcaatttcacactttcagtgagcagttggcttattacaaaattctagaaaaaatggaaaaagaaaacagttctgaatattcaattgtaggtctatgaacttgactgtg------------------------TATTA--------------AATTTT---ATCAATTACT--G--T--TT--------------------TCTTCCTATAACTAGGGCTAGGGCCTGTACAAAAAGTGAGAATTTT---TGC-ACAC---------AGTTGC-A-----------ATT-----A-------GAGTAAATT-----T-TT--A-CTGGAATTAATGTGTTAAAT-AACA-TATG-CTATGTATACCTGAAATA-TAAA-----TGTAaagtcctaaaaataaaaagagaagataggagtatattaaattttatcaattactgttttcttcctataactagggctagggcctgtacaaaaagtgagaatttttgcacacagttgcaattagagtaaatttttactggaattaatgtgttaaataacatatgctatgtatacctgaaatataaatgtattcaaccaatttaatatctgtaaagtttgaaa
gi|22 : atttcctaatgctcctgtttttatctagaatttgataactattaatatttcttgcaaaattattttttcaaaaattatccttgttatggtcattgaaattatgccagcataaaaatattatgtatatatgcagtgcttcctagtctcaatttcacactttcagtgagcagttggcttattacaaaattctagaaaaaatggaaaaagaaaacagttctgaatattcaattgtaggtctatgaacttgactgtgtacatagtattgtaaatgcgctcttgatgatttactgttcgttagtttttacaccattttttgtagcatttctattccaagtcctaaaaataaaaagagaagataggagtaGTAT-A--CTG-T----AA-CT-------------CTG----AA-AA----G--TTGAAA--ATAT--CA---C---T-TA-----------G--TGC-T----C--A-AA-CATTTC---TT--------CTTAATTTC-GTT---TC--------TTAAT--CAAA-TC-GAAACTGTACAGTTTGAA-----------ATAAAAT-GC-TTTCACT---CCTAAGA-----------TGCAAA---------------T-------------TC------------ttcaaccaatttaatatctgtaaagtttgaaa
gi|23 : aattaatattttaagaaaacTTTTCTTGGT---T-ACAAAATAATGCG------AAGTACAATA-TG---TACTAAATAAATGT--CATAC-----------CG-CTCTGGAATATTGAAAGTGTC--TACTT--TATAGTGTTGTTATTTTTTATACT---ATCTATT-----------------TTTA-----TATTTGCTTTCATATT--AGGTA-GGTAG-AA-A-ATCCACCCCTATTGTGCTTTAGgatacgttttcttggattcc
gi|24 : -------GAGTAAA-G-----TGTT--AATTGAAATTGACATAT----T-AACA-AATG-C----CATATCTAAAATA-TAAT-----TGTAAATTGG---------------TTGC-----------CA----TA------TATAC--------T---------GTTATGTAC-A--AAGTT----AA-TT-------------CTA----TA-AT----C--CTGAAG--ATATCACA---T---TGTAT---------GG--TGC-G-G--T---TAT-CATTTC---TT--------CT--GTT---ATT---T
gi|25 : -------------------T--------AA------------------------TATTC--------------CATTTT---ATCAATAAGT--GATT--TT--C-AAT-----A---CTGCTCGTCCTAAACATAGGACTAAGGATGCTAATATTAGACAGCA-TTT---TGT-ACACAAA------AGTTCCAAG--------T-AT
gi|26 : gttgtagtatgacatttccgaggtctaaaattaaaaataaaTAT-----------TG-TTTTGGAAAGCCGAAAGCGTC--TAC-T--TACAGCTACGTTATTCTTGAACCTTGCAAC---------AAA----T----AAGA-----TTTCTGCGTCCATATT--AGGTT-AGTTG-AA-ATTTCCATCCTGATTGTGTTTAAG
gi|27 : TACACAATATATTGTA--ATTATGTTTCTGA--T-GTT---TCACTGCTTCATACGAGTTTTC-AT-AAACTC-TTATAGT--ATT-CTTTAACAGT------CC-------------------T--------Actgatagatattatatctacacatat
gi|28 : tcatttgattgtggagctacgggttctgctttgTAGGGCTACGGACTCTACA--------------T---TGT-ACAC-AATATTGTAGTTAC-AA--------T-ATT---------------GT-AG-T-----T-CTCGA-TTAGAATTAAaaaaa
gi|3 : gcaagaacactagtaatgtaattcattcacttaattt------------------------TATTC--------------TATTTT---ATCAATTTAT--G--T--TTTCC-AAA-----A---AAATTCTGGCTGAAAATA----------CTTTACAAAAACTTATCAAATTGCATAT-ATAC-AATGT---AGTACC-A-----------ATT---T-G-------GAGTAAA-T-----T-TT--A-TTGGAATGAACATGT----T-AACA-GATG-T----CGTACC--AAATA-TATTATATTTGTAAATTGGTTGTCGTACATGTACATGT-----A-----TA----TACAACAATATAC--------AATATTTTCAGCAAAATATTA--CTA-T----AA-CC-------------CTG----AA-AA----G--TAGAAA--ATAT--TAAACT---T-TA----------GT--TGC-T-G-----ATGT-CATTAC---TT--------CT--GTC---ATT---TC--------TCAAC--TGAAGTCGGGAACTGTAAATTTTGAAATGA-AGTGT-ATAAAAC-GC-TCTTACA---ACTAAGA-----------TGAAAA---------------TTATCA--------TT------------T-----TGGAT---TTTAC--CGAGC-AAATAA-TTTGTAAAATT--ACACGCAATCA-AATT-------AA-----A----A--A----------TTGC--A-GAATTGT-TTA-G--A--------AAATTTAACGAACCTCTC--------C-ACAAAATAttgc
gi|30 : tgtaatattacttttccaagtcctagagataaataagaatataAAAT---CATG---TCACAATT-----C-AA-----A----A-C-----------CT-C--A-AAATCAT-GTA-T---TTTTT---CAATTACACCAACTTATTTTGGT---C-ATTGAATAAAGCA------Ataccattaaat
gi|31 : A---ATGCTA--TAC-----------TG-TTCTGGAGAACTGAAAGTGTC--TACTT--TACAGCGATGTTATTTTTGACACtggcttggtt
gi|4 : tgaagtacttATGT----T-AACA-GATA-T----AATACCTGAAATA-TATT------GTT--TTGGTATC-----------ATGT-----A-----TA----CAACCG--TGTAC--------AATATTTTAAGCAAAGTAT-ATACTG-T----AA-TT-------------CTG----AATAA----G--TTGAAA--ATAT--C----------TA----------GG--TAC-T-C--T---TAC-CATTTC---TTGGGTCATTTC--GTT---ATT---TT--------TCAAC--CAAA-TCGGAAACT----ATTGTGAAATAA-AATGT-ATAAAAT-TCTTTTTATT---ACTAAGA-----------TA--AAAATTAAATACGCTATT-------------CC------------T-----TGGAT---TTCAC--CGTGCAAAATAA-TCTGTACAAAT--AAATGCAGTCA-AATGTGCCAC-AA-----ATC--A-CACC--------CT-C--T-AAATAAT-ATA-T---TTTTG---CAATTTATACAA-TTTTTTTGGT---A-ACAAAAT--TGCA------AAG---------------------------TACATG-------------G-TTTTGGTTTGCTGAAAGTGTA--TTCTT--TACACTGATGTTTTTCTTGGATCT---ATCTATTCAAACAAA----C----AAGA-----TATCTGCTTTCATATTTGATATTAAGTAG-AACA-TTCCACCCTCATTGTGTTTCA
gi|5 : TTGTAGTCAATTACTCC-----TAATAA-TC-------------------C--------AC------------------------TGTTCATC-----------TGTTTTC--AACAA--AATTCA--T--TG--T-AGT-----ATTCCTGTTCTTGCTAAACATACAGCTACATACTCCACAAAAAGAGAGCATTTT---TTCGAAAG-AA------CGTTCC-A------------TT---T---------GA-TAAA-TACGGAT-TT----TTGGATTTAAGATGT----T-AACG-GATG-C----CATACCAGAAATA-TATT-----TGTGAATTAG---------------GCCT-----AGTTTTCA----AA------TATAC--------A---------ACTATGTAT-G--GTG-TTTTAAG-CTAAATATTCAGTAACTGTAGCAA-AAACATG--TTGAAA--ATA---CA---TGTAT-CA----------CGCTTGCAT-GCTC--ATACGAATTTTATGTC--------CT--ATC---ATTATATT--------TCAAC--CAAA-T-------TGTAAAATTC-AAATAA-AATGT-ACAAAAT-G--TTTTACA---ACTAAGAAAATTAAATACTT--AA---------------T-------------TC------------T-----TGGAA---TTCAC--CGTGC-ACATAT-TCTTTACAAAC--ACATGCAGTCA-AACTTGACAC-AG-----A----T-CA----------Caataaatattt
gi|6 : actctactctgtacacgataTACACAATAT--TGTA--GTTAGG-----------------TTACTG-TTCAT-C-AGATTTCTAAAAAATTCATTGCAAT--ATTACATT-----T------TC-------------------T--------ACCACTAAAAATAAATAAGAGAATAATACTC--------------TATTTT---ATCAATTAAT--G--T--TTT-C-AAT-----A---CTGCTCTTAATAAACATAGGGCAATGGACTCTACCAAAAGAGAGCATTTT---TGC-ATAC-AA------CGTTCA-CGTTACCTTAT-ATC---GAG-------GAGTAAATT-----T-TT--A-TTGGAATTAACATGT----A-AACA-GATG-C----CATATCTGAAATA-CATT-----TGTAAATTGG---------------GTGTCAAAGA-----TACATCCA------TATACAATATTTAA---------GCAAAGTAT-A--CTG-T----AA-CT-------------TGG----AA-ac
gi|7 : tatgttttatagtttgaatttcatactttcattctagaaaaactgggacaaaaacaaagtttctgaatattataagtcatttaattttggagctacggactctactgtgtatAAATA--A--CTG-T----AAATT-------------CTG----AA-AA----AGTTTGAAATTATAC--TA---T---T--A----------TT--TAC-T-C--T--A----CTTTTC---TT--------TTC-ATTCGTAAT---TT--------TCAGG--C-----------CT-----TTTTTAACTACTAGTGTTATAAAGTCGT-TTTT-CTTTTACTAATA-----------TG--AA---------------TAA-----------TCAGATACTTTTATC-----TGGAT---TTCAC--CAAGC-ATATAACTTTTTACAAAT--TCGTGCGG-CA-A--TTGACAC-AA-----ATTTCACCA----------CT-C--A-AAA--ATAGTATT--ATGTGT----AATTTAA
gi|8 : atacaacattatggaatatttcaagcaagtTA--ACTATGCTCCTGAGCT-AAT---TTACTG-Tgatttcacttataacaattaaattatgttttattataatttaagtcttggtttatcatgtatccttgaaattctatgtactaaatcaaacaactttcctagctggtggatagaaaatgccacttttagccgtcatcatgtttacgttgaatgacttccattact
gi|9 : caaataaattcacgccgaaatacaatcgggtgaactattttaattatctctatttttgcgcatatttatagacaaaaagtaaataaatttttgaaatcttttataattttacttggttcttatgagattaaactaagtttatctaaaaattactcggactaccgttaaccctttcttgcaaaatcaatttttaagaatatctttgttatagtcgaaatttactacacaaaatagttatgtatatattgtgttttaagtcatttctactttcagtagcagttgatgtattacataattcctagaaaaattggagtatgattaacaaagtttctggatgttgtaatttattcatttattttgggctatcggattcttacgtgaactataacatatttagtAAATTTTTCCACAA-AGTTT-ATAA-----T-CTCTAGT---TCAAGGA-----------GT--AA---------------T-------------TC------------TATTACCGGATAGTTTCAT--CTAGA-AAATAA-TCTGTACAAAT--ATATGCAATCA-TATTTGACAT-AA-----ACCATA-CACATGTATACTCT-C----ATATCAT-AAA-T--ATTATC---TAATTTAACAAACTTTTCGTGGTACGTAACAAACTAGAGCA------AAGTA---C--T----T-----A---ATGCT--GTAC-----------TGTTTTTGGAAAGCAG-AAGTGTC--TAGCTACTTCAGTGGTGTTCTTCTTGAAACT-TGATTCATT-A---CAA----C-----AGACAATTTATCTGCTTCCTTATT--GTGTT-AGTAG-AA-A---CTATCCTCAATGGGTTTTA
blockSeqs : AT A TCAATACA C A A G T CT CA A T TTCTACCACTAAAAATAAATAAGAGAATAATACTC GTC TA ATTTCAAATTAAAAA T A A C A GT GCA G AATATTGT AAGTGTCTGATAGTCATACT TACGGA G CGA TAAA C G CTATG T ATATT G TTGTCGTACATGTACATGTATATACAACAATATACAATATTTTCA T T TA T TTTA A AAATATTCAGTAA TAGC T ACATG TT CA TTCATGTGTATTTGGGTGCTGATAC ATG GGGTCATTTCGTT ATA GTTAATTT GG G CG GT T TT A C CT TTT TAAAAATTAAATACGCTATTCCT AGT TT A A C T G GT C T . ACCATACACATGTATACT G AT T AG T TCA TGGC ACGTA GAAGTACAATATGTACTAAATAAATGTCATAC T T TA C AC TGC AAAGGAACCA CAATT TG A C ATT C AG
blockSeqs : . T GCTAAT . G . . A TT . A G TTCAAGTCCTAAAAATGAAAAAAAAAGAAAA C CA TCATTGTAGTATTC T G A T T GC . . AATGT CGTTACCTTATATCGAG TACA . AA . . . TT . C G TATCATGTATACAACCGTGTACAATATTTTAA A . . . . . . . . AGT . . TGTATCACGCTTGCATGCTCATACG . CTTAATTTC . . . . TA GT . T A . T . TGAAAAGTAAATACCTATTTCT . . G . . T G . . T . ATTTCACCA . A A T . A C A TATGTAAGTACTTTTAAAATGTTTCAC . T . T . GT AAAGCAAATA . . . T CAT G TG
blockSeqs : . A TAAT . A . . A CA . T T TCCAAACCCTAAACAAAGAAAATACTACTC . TT GTATTTGAATA T A T G T AT . . AAA GATATCATG TT . A . . . C . . G GTGTCAAAGATACATCCATATACAATATTTAA A . . . . . . . . G . . AACTTTAGTTGCTGATGT . TTCATTCGT . . . . TG GT . T A . A . TGAATAATCAGATACTTTTATC . . G . . C G . . T . TTCACAAC . A C T . A A T AAAGCACTTATTCCTATTAC . T . A . GC CAAACAAACA . . . . AT C CT
blockSeqs : . A TAAT . G . . A T . A A TCCTAAAGATAAACATGAAAATATATTC . TA GATTTTCAATA A C T A T GT . . AA AATATT TT . A . . . C . . A GCCTAGTTTTCAAATATACA T . . . . . . . . G . . TTGTATGGTGCGGTTAT . TTGTT . . . . CG GT . T A . C . TAAATATCAAAAACTTTTTCT . . G . . C T . . T . ATCACACC . A T G . A C T AAAGTACTTAATGCTGTAC . C . T . TG AAATA . . . . TT T TG
blockSeqs : . G TGAT . A . . A C . A T TAATAATCCACTGTTCATC . AA GTTTTCCAAAA G C A T G GA . . TA AATTTG T . A . . . T . . G TTGCCATATATACT A . . . . . . . . C . . CTTAGTGCTCAAA . CTGTT . . . . CG GT . T A . C . AAATTAAATACTTAATTCT . . A . . T T . . T . ATCA . A C T . . C T AGTGTTTAATGGTATAT . T . T . . ACAAC . . . . AA C TC
blockSeqs : . A TGTT . A . . . . . . C . TT GCTTTTGATA A C C T T CT . . AA AATTA G . A . . . T . . . . . . . . . . G . . TAGGTACTCTTAC . CTGTC . . . . C G . T A . C . TGAAAATTATCATTT . . T . . C G . . T . AAA . T A G . . T C AAAGTACATG . T . T . . T . . . . A T TC
blockSeqs : . . . . . T . TA GTTTTCAATA G G A T T GA . . AA ATTT T . . . . . C . . . . . . . . . . G . . TTATTTACTCTA . CTATC . . . . . . . . . . T . GTAATTCTATTAC . . . . . . . . . . . AAC . A C A . . . C . A . C .
blockSeqs : . A GTTT G G C T T GA . . . T . . . . . C . . . . . . . . . . . . . . . . . . . . T . . . . . A . . . A A . . . . .
blockSeqs : . . ATA . A C A T T . . . . . . . . .
blockSeqs : . . . .
blockSeqCons : A** TGAT****** GTTTTNAATA**************** AATATN*********************** A*** G****** TTCTTTAGGTGCTCATAC************************ ATCAAC****************** A*** AAAACAACA********* AT**
originalCons : ATACACAATAT--TGTA--ATTGTGCTCCTGA--T-AAT---TTACTG-TTCGT-C-AGTTTTCTACAAAACTCTTTGTAGT--ATTACTNT-----T------CC-------------------T--------AC------------------------TATTC--------------TATTTT---ATCAATTAAT--G--T--TT--C-AAT-----A---CTNTTCTTNCTAAANATAGGGCNACGGACTCTACAAAAAGTGAGCATTTT---TGC-ACAC-AA------AGTTCC-AG--------T-ATT---TAG-------GAGTAAA-T-----T-TT--A-TTGGAATTAACATGT----T-AACA-GATG-C----CATACCTGAAATA-TATT-----TGTAAATTGG---------------GTGT-----A-----TA----TA------TATAC--------A---------GCNAAGTAT-A--CTG-T----AA-CT-------------CTG----AA-AA----G--TTGAAA--ATAT--CA---T---T-CA----------GG--TGC-T-G--T--ATAC-CATTTC---TT--------CT--GTT---ATT---TT--------TCAAC--CAAA-TCGGAAACTGTAAATTTTGAAATAA-AGTGT-ATAAAAT-GC-TTTTACT---ACTAAGA-----------TG--AA---------------T-------------TC------------T-----TGGAT---TTCAC--CGAGC-AAATAA-TCTGTACAAAT--ACATGCAATCA-AATTTGACAC-AA-----A----A-CA----------CT-C--A-AAATCAT-GTA-T--ATTTTT---CAATTTAACCAACTTTTCTTGGT---T-ACAAAATAATGCG------AAGTA-AGCA-T----TA-TAAA---ATGCTACATAC-----------TG-TTTTGGAAAGCTGAAAGTGTC--TACCT--TACAGTGATGTTATTCTTGAAACT-GCATCTATT-A---AAA----C----AAGA-----TATCTGCTTCCATATT--AGGTT-AGTAG-AA-A-TTCCACCCTGATTGTGTTTTAG
finalCons : ATACACAATAT--TGTAA--TTGTGCTCCTGATGAT------TTACTG-TTCGT-C-AGTTTTCTACAAAACTCTTTGTAGT--ATTACTNT-----T------CC-------------------T--------AC------------------------TATTC--------------TATTTT---ATCAATTAATGTTTTNAATA----------------CTNTTCTTNCTAAANATAGGGCNACGGACTCTACAAAAAGTGAGCATTTT---TGC-ACAC-AA------AGTTCCAATATN-----------------------GAGTAAA-T-----T-TTA---TTGGAATTAACATGT----T-AACA-GATG-C----CATACCTGAAATA-TATT-----TGTAAATTGG---------------GTGT-----A-----TA----TA------TATAC--------A---------GCNAAGTAT-A--CTG-T----AA-CT-------------CTG----AA-AAG------TTGAAA--ATAT--CATTCTTTAGGTGCTCATAC------------------------CATTTC---TT--------CT--GTT---ATT---TT--------TCAAC--CAAA-TCGGAAACTGTAAATTTTGAAATAA-AGTGT-ATAAAAT-GC-TTTTACT---ACTAAGA-----------TG--AA---------------T-------------TC------------T-----TGGAT---TTCAC--CGAGC-AAATAA-TCTGTACAAAT--ACATGCAATCA-AATTTGACAC-AAATCAAC------------------CT-CA---AAATCAT-GTA-T--ATTTTT---CAATTTAACCAACTTTTCTTGGT---T-ACAAAATAATGCG------AAGTA-AGCA-T----TA-TAAA---ATGCTACATAC-----------TG-TTTTGGAAAGCTGAAAGTGTC--TACCT--TACAGTGATGTTATTCTTGAAACT-GCATCTATTAAAACAACA---------AGA-----TATCTGCTTCCATATT--AGGTT-AGTAG-AAAT--TCCACCCTGATTGTGTTTTAG
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TAATGATTTTTATTTTGTTCTTGTGAAACAGACTTATTTTATCTAAAAACATTTCTTGATTACCATTAACTTTATTTTCTTACTAAAGCATTTATATCTAAAATATATACTAGTATATTTCTTTTGCATTGAAAATATACTGATACAGAAACATCATAAATATTGTGTTTTATATCCTGAATTTCATACTTTTATTGAGCAGTTGGTTTACTACATAATTCTACAAAAACTTGGACAAGAACAAGGTTTTTGAATATTGTAATTCATTCAATATGATGACAATTGATTCGTCC
Unaligned ( gi|17 ): AAAAGCAAATAAAATCTTAAATATATTTTAAAATGCTTTTATCTTGTTCTTATTAGACAAAAATTATCCTTGTTATGGTCATTTTAGAAATATTATGTATATTAATTGTGAAATATTATGATATATTGTGTTTCATACTCTGAATTTCATACTTTCAGTGGGCAGTTGGCTTATTACGTAATTCTAGAAAAATTGTGACAAGAACAAAGTTTCTGAATATTGTAATTTATTCCTTT
Unaligned ( gi|20 ): AAATACAATGTGAAACCTATTGATGATTTTATTATGATATTAAGTCATGAGACAAACTTACTTTATCTAAAATATAACTTAATTAGCCTTAAGCTTTCTTGCAAAATCATTTCCTTAAGAATCTTAATTTGGATCATTGAAATTATACTGACACAGAAAAATTATATATATTTT
Unaligned ( gi|21 ): TCATACTTTCAGTGAGGAGTTGATTTATTACAAACTTCTACAATACATGGGACAAGATCAAAGTTCCTGGGTACTAGCAATGTATCTTCTGGGTCCTAGTATTGGTATTTTGCGTGAGTAACTAGGTATTGTATTTCCTGGGTACTATTATTTTGTAATTTTTATCCGAGGT
Unaligned ( gi|29 ): TAGTTTGAATTCATACTTTCAGTGAGCAGTTGGCTTTTTACATAAATCTAGAAAAGCTGGGACACGAACAAAGGTTCTGAATATTTATATTGTAGGACTAC
Unaligned ( gi|32 ): TAAGTTTATTTATTCATTTTTGTGCAAACTCACCAACTTATCTTGGTACAAAATAAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111
lowQualScore : 111 1111111 11 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111 111111111111111 222222222 55555555555555555555555555555 2222222 111 111111 11111 99999999999999999999999999999999999999999999999999999999999999999999999999999 111111 5555555555555555555 111111 111111111111111111 11111111 999999999999999999999999999999999999999999999999999999999999999999 1 11111 4444444444444444 111 1111 11111 2222222222222222222222222222222222222222222222222222222 111 3333333333 1 1111
lowQualScore : 77 111 5555555 5 1 5 5 1 11 66 3 1 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 22 888 222222222222222 2 1 1 2 2 22 666 4 111111111 4 33333333333333333333333333333 4 1111111 4 555 9999 4 4 111111 00 4 55555 44444444444444444444444444444444444444444444444444444444444444444444444444444 1 7777 4 4 777 4 555555 66 0000000000000000000 666666 5 888 999999999999999999 777 66666666 66 4 66 0 0 22 0 4 44 3 4 66 777 888888888888888888888888888888888888888888888888888888888888888888 888 66 5 5 0 1 2 66 0 4 33333 7777777777777777 2 1 66 5 666 0000 0 0 22222 1111111111111111111111111111111111111111111111111111111 4 1 66 5 66 888 1111111111 77 5 1 8888 1 11
lowQualScore : .. ... ....... . . . . . .. .. . . ....................................................................................... ... .. ... ............... . . . . . .. ... . ......... . ............................. . ....... . ... .... . . ...... .. . ..... ............................................................................. . .... . . ... . ...... .. ................... ...... . ... .................. ... ........ .. . .. . . .. . . .. . . .. ... .................................................................. ... .. . . . . . .. . . ..... ................ . . .. . ... .... . . ..... ....................................................... . . .. . .. ... .......... .. . . .... . ..
lowQualScore : 99 777 9999999 7 4 7 7 7 77 99 4 0 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 000 55 444 666666666666666 4 0 0 3 4 22 444 0 777777777 0 99999999999999999999999999999 4 4444444 4 222 4444 4 4 000000 99 4 66666 88888888888888888888888888888888888888888888888888888888888888888888888888888 0 3333 4 4 888 4 888888 99 9999999999999999999 888888 0 888 555555555555555555 888 11111111 11 4 66 9 9 99 6 0 77 2 0 33 000 999999999999999999999999999999999999999999999999999999999999999999 888 99 4 0 0 1 5 99 8 4 22222 8888888888888888 0 9 33 0 222 1111 4 8 33333 5555555555555555555555555555555555555555555555555555555 4 0 11 4 11 999 3333333333 99 7 4 3333 7 33
consensus : ATACACAATAT--TGTA--ATTGTGCTCCTGAT-AAT---TTACTG-TTCGT-C-AGTTTTCTACAAAACTCTTTGTAGT--ATTACTNT-----T------CC-------------------T--------AC------------------------TATTC--------------TATTTT---ATCAATTAATG-T-TTTC-AAT-----A---CTNTTCTTNCTAAANATAGGGCNACGGACTCTACAAAAAGTGAGCATTTT---TGC-ACAC-AA------AGTTC-CA--------------A-T---AT---N---G-AGTAAA-T-----T-TT-A-TTGGAATTAACATGT----T-AACA-GATG-C----CATACCTGAAATA-TATT-----TGTAAATTGG---------------GTGT-----A-----TA----TA------TATAC--------AAT--T-T------------GCNAAGTAT-A--CTG-TAA-CTCTG---AA-AA---G--TTGAAA--ATATCAT---NC-------TTTA-GGTGCT---CA-TACCA-TTTC---TT--------CT--GTT---ATT---TT--------TCAAC--CAAA-TCGGAAACTGTAAATTTTGAAATAA-AGTGT-ATAAAAT-GC-TTTTACT---ACTAAGA-----------TG--AA---------------T-------------TC------------T-----TGGAT---TTCAC--CGAGC-AAATAA-TCTGTACAAAT--ACATGCAATCAAATTTGACAC-AAA--T--CA-A--C-----------CTCAAAATCAT-GTA-T--ATTTTT---CAATTTAACCAACTTTTCTTGGT---T-ACAAAATAATGCG------AAGTA-AGCA-T----TA-TAAA---ATGCTACATAC-----------TG-TTTTGGAAAGCTGAAAGTGTC--TACCT--TACAGTGATGTTATTCTTGAAACT-GCATCTATTAAAAC-A-A-CAAGATATCTGCTTCCATATT--AGGTT-AGTAG-AA-A-TTCCACCCTGATTGTGTTTTAG
Reference ( family-4141 ) : ATACACAATAT--TGTA--ATTGTGCTCCTGAT-GAT---TTACTG-TTCGT-C-AGTTTTCTACAAAACTCTTTGTAGT--ATTACTNT-----T------CC-------------------T--------AC------------------------TATTC--------------TATTTT---ATCAATTAATG-T-TTTN-AAT-----A---CTNTTCTTNCTAAANATAGGGCNACGGACTCTACAAAAAGTGAGCATTTT---TGC-ACAC-AA------AGTTC-CA--------------A-T---AT---N---G-AGTAAA-T-----T-TT-A-TTGGAATTAACATGT----T-AACA-GATG-C----CATACCTGAAATA-TATT-----TGTAAATTGG---------------GTGT-----A-----TA----TA------TATAC--------A-------------------GCNAAGTAT-A--CTG-TAA-CTCTG---AA-AA---G--TTGAAA--ATATCAT---TC-------TTTA-GGTGCT---CA-TACCA-TTTC---TT--------CT--GTT---ATT---TT--------TCAAC--CAAA-TCGGAAACTGTAAATTTTGAAATAA-AGTGT-ATAAAAT-GC-TTTTACT---ACTAAGA-----------TG--AA---------------T-------------TC------------T-----TGGAT---TTCAC--CGAGC-AAATAA-TCTGTACAAAT--ACATGCAATCAAATTTGACAC-AAA--T--CA-A--C-----------CTCAAAATCAT-GTA-T--ATTTTT---CAATTTAACCAACTTTTCTTGGT---T-ACAAAATAATGCG------AAGTA-AGCA-T----TA-TAAA---ATGCTACATAC-----------TG-TTTTGGAAAGCTGAAAGTGTC--TACCT--TACAGTGATGTTATTCTTGAAACT-GCATCTATTAAAAC-A-A-CAAGATATCTGCTTCCATATT--AGGTT-AGTAG-AA-A-TTCCACCCTGATTGTGTTTTAG
gi|1 : ATGCACAATAT--TGTACCATTGTGCTCCTGAT--AT---TTAATG-TTCAT-C-AGTTTTCTACAAAACTCTTGGTAGT--ATTACTAT-----T------CC-------------------T--------AC------------------------TATTC--------------TGTTTC---GTCAGTTGATG-T-TT-C-AAC-----A---CTTTTCTTACTAAGAATAGGACAACAAACACTGCGAAATGTGAACATTTC---TGC-ACAC-AA------AGTTC-CA--------------G-TG--AT---TTAGG-AGTAAA-T-----T-TTCA-TTGAAATTAACATGA----T-AACA-GATG-T----CATACCTGGAATA-TATT-----TGTAAATTTG----------------TGT-----A------A----TA------TACAC--------A-------------------ACTAAGTGT-A--TTA-CAA-CCCTG---AA-AA---GG-TTGAAA--ATATCAT---CC----------A-AGTGCTGGTCAATGCCA-TTTC---TT--------CT--GTA---ATT---TT--------TCAAC--CAAA-TCAGAAGTTGTAAATTTTGTAATAA-AGTTT-ATAAAAT-GC-TTTTACT---ACTAAGA-----------TG--AA---------------T-------------TC------------T-----TGGAT---TTCAC--CAAAC-AAATGATTTTTTACAAAT--ACATGCAATTAAATTTAACACTAAA--A--CA-C--C-----------CTTAAAATCAT-GTA-T--ATTTTT---CAATCTCACCAGCTTTTCTCCAT---T-A-AAAATGATGCGTGTTATATATA-TACA-TGTAATA--AAA---ATGTTACATATAATAAAAATAATG-TTTTGGAAAGCTGAAAATATC--TACCT--TTCAGTGATGTTATTCTTGAAACT-GTATCTATTAA----A-A-CAAGAGGTCTGCTTTCATATT--AGGTT-AATAG-AA-----CCAGCCAGATTCTGTTCTAG
gi|10 : TT---TT--------TGAACGGCACA-TCGGAAACTG---ATTTTGAAATAA-------------T-GT-CTTTACT---ACTGAGA-----------TG--GA---------------
gi|10 : TTAAATTTAT-TTA-TTCATTTTTTGGCAATT-AACCAACTTTTCCTGGT---A-ACAAGATAATGTA------AAGCA---C--T----TA-T-------TCCTAT-TAC-----------TG-CTTCGAAAAGC-------GTC--TACCT--AACAGTGATGGTATACTTGAAACT-GTGTCTATTAAAGG-A-ACCAAGATATCTGCTTCCATATT--AGGTA-AGTAGCGA-A-TTCCACACAGATCTTATTTTAGaatgaaatagataatttgttttaaatttatttattcattttttggcaattaaccaacttttcctggtaacaagataatgtaaagcacttattcctattactgcttcgaaaagcgtctacctaacagtgatggtatacttgaaactgtgtctattaaaggaaccaagatatctgcttccatattaggtaagtagcgaattccacacagatcttattttagttttgatgccaatcgaaagattttgtcacaaactcacaatgaa
gi|12 : tttttgaacggcacatcggaaactgattttgaaataatgtctttactactgagatggaaatgaaatagataatttgttTACACAATAT--GGTA---TTGTGCTTCTGAT-AAT---TTACTG-TTCAT-C-AGTTTTCTACTAAATT--TTGTAGT--ATTACTTT-----TTCAAGTCC-------------------T--------AA------------------------AAATGAAAAAAAAAGAAAATATTTTGTCATCAATTAATG-C-TTTT-GAT-----A---CTTTTCTAACTAAAATTAGGGCCACAGACACTACAACAAGTGAGCATTGT---TGC-ACAC-AA------AGTTC-CAAGTGTCTGATAGTCA-T---AC---T---A-AGTTAA-T-----T-TC-A-TTGGAATTAACATGT----T-AACA-AATG-C----CATGCCT-------TATT-----TACAAttttgatgccaatcgaaagattttgtcacaaactcacaatgaa
gi|13 : acggatttt--------TCAAC--CAAT-TTAATATCTGTAAAGTTTGAAACAA-AGTG--ATAA--C-GA-TCTTACT---ACTAAGA-----------TA--AA---------------TATCAAAAACTTTTTC------------T-----TGGAT---TTGAC--CAAGC-CAATAA-TTTGTACAAATGTACTTGCAATCAAATTTGAAAC-AAA--T--CA-----------------T--GAATAAT-TTT-T---TTCTT---CAATTTATCCAACTGTTCTTGAT---T-ACAAAATAATGCT------ATGTA-AGTACT----TT-TAAA---ATGTTTC--AC-----------TG-TTTTGGAAAGCTCAAAGTGTCTATACTT--TACAGTGATGCTACTCTTGAGAccatatacaata
gi|14 : ATACACAATAT--TGTG--ATTGTGCTCCTGATCAATACATTACTG-TTTGT-C-AGCTTTCTGCAAAGCTCTTTGTAG--------TGC-----T------CC-------------------TAAAGATAAACATGAAAATA---------------TATTC--------------TATTTT---ATGTAT--AT----------AT-----A---CTTTTCTTGCTAAAAATAAGGCTACAAACTCGACAAAAAGCAAGTATATT---Ttatttgatcttacattt
gi|15 : atgaaatgttagaatttaaatggaagacaaatatacacatgtacttattcaaaatttctattttgtctatatctgaaaatgctacgctgtttgtTACACAACAT--TGTA--TATATACTCCTGAT-AAT---TTACTG-TTCAT-C-TGTTTTCTACAAAACT-TTTGGAAT--ATTACTTT-----T------CCAAACCCTAAACAAAGAAAAT--------AC------------------------TACTC--------------TATTCT---ATCAATCAATA-T-TTCA-AATTAAAAA---CTTTTCTCAGTTAATAAAGAAAGACGGAC-CTATAAAAA-TGAGCATTTT---TGC-ACAT-TA------AATTC-CA--------------A-T---
gi|16 : aagtttctgaattatttatgttttaggaactctgcattcgAAGTAT-T--CTG-CAA-CCCAG---AA-AA---G--TTGAAA--ATATCAT---TCATGTGTATTTG-GGTGCT---GA-TACCA-TTTC---TT--------TT--GTT---ATT---TTGTTAATTTTCTAC--CAAA-TTGGAAACTGTAAATTTTGAAATAA-AGTGT-ATGAAAT-GC-TTTTACA---ACTAAGA-----------TG--AAAAGTAAATACCTAT-T-------------TC------------T-----TGG-T---TTCACTTC-AGC-AAAT---------CAAAT--ACATGCAATCAAGTTTGACAC-AAT--TCACA-A--C-----------CTCAAAATCAT-Gtatttaata
gi|18 : a-------------------T--------AC------------------------TG--C--------------TGTTTT---AT-AATTTATG-TATTTG-AAT-----A---CCATTTTCCCTAAGTATAGAGCAACGCACTCTACAAAAGATGAGCATTTC---TA--ACAC------------TC-TG--------------A-TATCAT---G---G-AGTACA-TACA--T-TT---TTTGAATTTACATGT----TCAATAGGATGTT----CATACCTG-AATATTATTC----CGTAAATT
gi|19 : taaagaataaaaagaaaataTTTTCTTGGT---T-ATGAAATAACAC-------------AGTG-T----T--TAA-----TGGTATAT-------------TA-TTTTGGTAAGCTGAAAGTGTT--TACAC--TACAGTGATGTTATTCTTGAAACT-GCATATATTAAAGCAA-A-TAAGATGTCGGCTTCCATATA--AAATT-AGTAGTAA-T-TTCTAGCCTGATTGCGTTTTatttgtca
gi|2 : TACATAGTAT--TGTA--AATGCGCTCTTGAT-GAT---TTACTG-TTCGT-T-AGTTTT-TACACCATTTTTTGTAGC--ATTTCTAT-----T------CC-------------------gataatctgtacat
gi|2 : atttcctaatgctcctgtttttatctagaatttgataactattaatatttcttgcaaaattattttttcaaaaattatccttgttatggtcattgaaattatgccagcataaaaatattatgtatatatgcagtgcttcctagtctcaatttcacactttcagtgagcagttggcttattacaaaattctagaaaaaatggaaaaagaaaacagttctgaatattcaattgtaggtctatgaacttgactgtg------------------------TATTA--------------AATTTT---ATCAATTACTG-T-TTT-------------------CTTCCTATAACTAGGGCTAGGGCCTGTACAAAAAGTGAGAATTTT---TGC-ACAC---------AGTTG-CA--------------A-T----T---A---G-AGTAAATT-----T-TT-A-CTGGAATTAATGTGTTAAAT-AACA-TATG-CTATGTATACCTGAAATA-TAAA-----TGTAaagtcctaaaaataaaaagagaagataggagtatattaaattttatcaattactgttttcttcctataactagggctagggcctgtacaaaaagtgagaatttttgcacacagttgcaattagagtaaatttttactggaattaatgtgttaaataacatatgctatgtatacctgaaatataaatgtattcaaccaatttaatatctgtaaagtttgaaa
gi|22 : atttcctaatgctcctgtttttatctagaatttgataactattaatatttcttgcaaaattattttttcaaaaattatccttgttatggtcattgaaattatgccagcataaaaatattatgtatatatgcagtgcttcctagtctcaatttcacactttcagtgagcagttggcttattacaaaattctagaaaaaatggaaaaagaaaacagttctgaatattcaattgtaggtctatgaacttgactgtgtacatagtattgtaaatgcgctcttgatgatttactgttcgttagtttttacaccattttttgtagcatttctattccaagtcctaaaaataaaaagagaagataggagtaGTAT-A--CTG-TAA-CTCTG---AA-AA---G--TTGAAA--ATATCA-----C-------TT---AGTGCT---CA--AACA-TTTC---TT--------CTTAATTTC-GTT---TC--------TTAAT--CAAA-TC-GAAACTGTACAGTTTGAA-----------ATAAAAT-GC-TTTCACT---CCTAAGA-----------TGCAAA---------------T-------------TC------------ttcaaccaatttaatatctgtaaagtttgaaa
gi|23 : aattaatattttaagaaaacTTTTCTTGGT---T-ACAAAATAATGCG------AAGTACAATA-TG---TACTAAATAAATGT--CATAC-----------CG-CTCTGGAATATTGAAAGTGTC--TACTT--TATAGTGTTGTTATTTTTTATACT---ATCTATT-----------TTTATATTTGCTTTCATATT--AGGTA-GGTAG-AA-A-ATCCACCCCTATTGTGCTTTAGgatacgttttcttggattcc
gi|24 : ---G-AGTAAA-G-----TGTT-AATTGAAATTGACATAT----T-AACA-AATG-C----CATATCTAAAATA-TAAT-----TGTAAATTGG---------------TTGC-----------CA----TA------TATAC--------T-------------------GTTATGTAC-A--AAGTTAA-TTCTA---TA-AT---C--CTGAAG--ATATCAC---AT-------TGTATGGTGCG---GT-TATCA-TTTC---TT--------CT--GTT---ATT---T
gi|25 : -------------------T--------AA------------------------TATTC--------------CATTTT---ATCAATAAGTGAT-TTTC-AAT-----A---CTGCTCGTCCTAAACATAGGACTAAGGATGCTAATATTAGACAGCA-TTT---TGT-ACACAAA------AGTTC-CA--------------AGT---AT---
gi|26 : gttgtagtatgacatttccgaggtctaaaattaaaaataaaTAT-----------TG-TTTTGGAAAGCCGAAAGCGTC--TAC-T--TACAGCTACGTTATTCTTGAACCTTGCA---------AC-A-AATAAGATTTCTGCGTCCATATT--AGGTT-AGTTG-AA-ATTTCCATCCTGATTGTGTTTAAG
gi|27 : TACACAATATATTGTA--ATTATGTTTCTGAT-GTT---TCACTGCTTCATACGAGTTTTC-AT-AAACTC-TTATAGT--ATT-CTTTAACAGT------CC-------------------T--------Actgatagatattatatctacacatat
gi|28 : tcatttgattgtggagctacgggttctgctttgTAGGGCTACGGACTCTACA--------------T---TGT-ACAC-AATATTGTAGTTA-CA--------------A-T---AT---T---GTAGT----T-----C-TCGA-TTAGAATTAAaaaaa
gi|3 : gcaagaacactagtaatgtaattcattcacttaattt------------------------TATTC--------------TATTTT---ATCAATTTATG-T-TTTCCAAA-----A---AAATTCTGGCTGAAAATA----------CTTTACAAAAACTTATCAAATTGCATAT-ATAC-AATGT---AGTAC-CA--------------A-T---TT---G---G-AGTAAA-T-----T-TT-A-TTGGAATGAACATGT----T-AACA-GATG-T----CGTACC--AAATA-TATTATATTTGTAAATTGGTTGTCGTACATGTACATGT-----A-----TA----TACAACAATATAC--------AATATTTTCA----------GCAAAATATTA--CTA-TAA-CCCTG---AA-AA---G--TAGAAA--ATATTAA---AC-------TTTA-GTTGCT---GA-TGTCA-TTAC---TT--------CT--GTC---ATT---TC--------TCAAC--TGAAGTCGGGAACTGTAAATTTTGAAATGA-AGTGT-ATAAAAC-GC-TCTTACA---ACTAAGA-----------TGAAAA---------------TTATCA--------TT------------T-----TGGAT---TTTAC--CGAGC-AAATAA-TTTGTAAAATT--ACACGCAATCAAATT-------AAA------A-A--T-----------TGCAGAATTGT-TTA-G--A--------AAATTTAACGAACCTCTC--------C-ACAAAATAttgc
gi|30 : tgtaatattacttttccaagtcctagagataaataagaatataAATCA----TGTCAC-AAT--T--CA-AAAC-----------CTCAAAATCAT-GTA-T---TTTTT---CAATTACACCAACTTATTTTGGT---C-ATTGAATAAAGCA------Ataccattaaat
gi|31 : aA---ATGCTA--TAC-----------TG-TTCTGGAGAACTGAAAGTGTC--TACTT--TACAGCGATGTTATTTTTGACACtggcttggtt
gi|4 : tgaagtacttATGT----T-AACA-GATA-T----AATACCTGAAATA-TATT------GTT--TTGGTATC-----------ATGT-----A-----TA----CAACCG--TGTAC--------AATATTTTAA----------GCAAAGTAT-ATACTG-TAA-TTCTG---AATAA---G--TTGAAA--ATATC----------------TA-GGTACT---CT-TACCA-TTTC---TTGGGTCATTTC--GTT---ATT---TT--------TCAAC--CAAA-TCGGAAACT----ATTGTGAAATAA-AATGT-ATAAAAT-TCTTTTTATT---ACTAAGA-----------TA--AAAATTAAATACGCTATT-------------CC------------T-----TGGAT---TTCAC--CGTGCAAAATAA-TCTGTACAAAT--AAATGCAGTCAAATGTGCCAC-AAA--T--CACAC-C-----------CTCTAAATAAT-ATA-T---TTTTG---CAATTTATACAA-TTTTTTTGGT---A-ACAAAAT--TGCA------AAG---------------------------TACATG-------------G-TTTTGGTTTGCTGAAAGTGTA--TTCTT--TACACTGATGTTTTTCTTGGATCT---ATCTATTCAAACAA-A-CAAGATATCTGCTTTCATATTTGATATTAAGTAG-AACA-TTCCACCCTCATTGTGTTTCA
gi|5 : TTGTAGTCAATTACTCC-----TAATAA-TC-------------------C--------AC------------------------TGTTCATC-----------TGTTTTC--AACAA--AATT-CATTGT-AGT-----ATTCCTGTTCTTGCTAAACATACAGCTACATACTCCACAAAAAGAGAGCATTTT---TTCGAAAG-AA------CGTTC-CA----------------T----T---T---G-A-TAAA-TACGGAT-TT---TTGGATTTAAGATGT----T-AACG-GATG-C----CATACCAGAAATA-TATT-----TGTGAATTAG---------------GCCT-----AGTTTTCA----AA------TATAC--------AACTATGTATGGTGTTTTAAGCTAAATAT-T--CAG-TAA-CTGTAGCAAA-AACATG--TTGAAA--ATA-CATGTATCACG----CTTG-CATGCT---CA-TACGAATTTTATGTC--------CT--ATC---ATTATATT--------TCAAC--CAAA-T-------TGTAAAATTC-AAATAA-AATGT-ACAAAAT-G--TTTTACA---ACTAAGAAAATTAAATACTT--AA---------------T-------------TC------------T-----TGGAA---TTCAC--CGTGC-ACATAT-TCTTTACAAAC--ACATGCAGTCAAACTTGACAC-AGA--T--CA-aataaatattt
gi|6 : actctactctgtacacgataTACACAATAT--TGTA--GTTAGG---------------TTACTG-TTCAT-C-AGATTTCTAAAAAATTCATTGCAAT--ATTACATT-----T------TC-------------------T--------ACCACTAAAAATAAATAAGAGAATAATACTC--------------TATTTT---ATCAATTAATG-T-TTTC-AAT-----A---CTGCTCTTAATAAACATAGGGCAATGGACTCTACCAAAAGAGAGCATTTT---TGC-ATAC-AA------CGTTCACGTTACCTT-------A-T---ATCGAG---G-AGTAAATT-----T-TT-A-TTGGAATTAACATGT----A-AACA-GATG-C----CATATCTGAAATA-CATT-----TGTAAATTGG---------------GTGTCAAAGA-----TACATCCA------TATACAATATTTAA-------------------GCAAAGTAT-A--CTG-TAA-CTTGG---AA-cac
gi|7 : tatgttttatagtttgaatttcatactttcattctagaaaaactgggacaaaaacaaagtttctgaatattataagtcatttaattttggagctacggactctactgtgtatAAATA--A--CTG-TAAATTCTG---AA-AA---AGTTTGAAATTATACTAT---TA-------TTTA-----CT---C--TACT--TTTC---TT--------TTC-ATTCGTAAT---TT--------TCAGG--C-----------CT-----TTTTTAACTACTAGTGTTATAAAGTCGT-TTTT-CTTTTACTAATA-----------TG--AA---------------TAA-----------TCAGATACTTTTATC-----TGGAT---TTCAC--CAAGC-ATATAACTTTTTACAAAT--TCGTGCGG-CAA--TTGACAC-AAATTT--CA-C--CA----------CTCAAAA--ATAGTATT--ATGTGT----AATTTAA
gi|9 : atacaacattatggaatatttcaagcaagtAAATTTTTCCACAA-AGTTT-ATAA-----T-CTCTAGT---TCAAGGA-----------GT--AA---------------T-------------TC------------TATTACCGGATAGTTTCAT--CTAGA-AAATAA-TCTGTACAAAT--ATATGCAATCATATTTGACAT-AAA--C--CATA--CACATGTATACTCTC-ATATCAT-AAA-T--ATTATC---TAATTTAACAAACTTTTCGTGGTACGTAACAAACTAGAGCA------AAGTA---C--T----T-----A---ATGCT--GTAC-----------TGTTTTTGGAAAGCAG-AAGTGTC--TAGCTACTTCAGTGGTGTTCTTCTTGAAACT-TGATTCATTACAAC-AGA-CAATTTATCTGCTTCCTTATT--GTGTT-AGTAG-AA-A---CTATCCTCAATGGGTTTTAgatttcacttataacaattaaattatgttttattataatttaagtcttggtttatcatgtatccttgaaattctatgtactaaatcaaacaactttcctagctggtggatagaaaatgccacttttagccgtcatcatgtttacgttgaatgacttccattact
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CAAATAAATTCACGCCGAAATACAATCGGGTGAACTATTTTAATTATCTCTATTTTTGCGCATATTTATAGACAAAAAGTAAATAAATTTTTGAAATCTTTTATAATTTTACTTGGTTCTTATGAGATTAAACTAAGTTTATCTAAAAATTACTCGGACTACCGTTAACCCTTTCTTGCAAAATCAATTTTTAAGAATATCTTTGTTATAGTCGAAATTTACTACACAAAATAGTTATGTATATATTGTGTTTTAAGTCATTTCTACTTTCAGTAGCAGTTGATGTATTACATAATTCCTAGAAAAATTGGAGTATGATTAACAAAGTTTCTGGATGTTGTAATTTATTCATTTATTTTGGGCTATCGGATTCTTACGTGAACTATAACATATTTAGTTAACTATGCTCCTGAGCTAATTTACTGT
Unaligned ( gi|11 ): TAATGATTTTTATTTTGTTCTTGTGAAACAGACTTATTTTATCTAAAAACATTTCTTGATTACCATTAACTTTATTTTCTTACTAAAGCATTTATATCTAAAATATATACTAGTATATTTCTTTTGCATTGAAAATATACTGATACAGAAACATCATAAATATTGTGTTTTATATCCTGAATTTCATACTTTTATTGAGCAGTTGGTTTACTACATAATTCTACAAAAACTTGGACAAGAACAAGGTTTTTGAATATTGTAATTCATTCAATATGATGACAATTGATTCGTCC
Unaligned ( gi|17 ): AAAAGCAAATAAAATCTTAAATATATTTTAAAATGCTTTTATCTTGTTCTTATTAGACAAAAATTATCCTTGTTATGGTCATTTTAGAAATATTATGTATATTAATTGTGAAATATTATGATATATTGTGTTTCATACTCTGAATTTCATACTTTCAGTGGGCAGTTGGCTTATTACGTAATTCTAGAAAAATTGTGACAAGAACAAAGTTTCTGAATATTGTAATTTATTCCTTT
Unaligned ( gi|20 ): AAATACAATGTGAAACCTATTGATGATTTTATTATGATATTAAGTCATGAGACAAACTTACTTTATCTAAAATATAACTTAATTAGCCTTAAGCTTTCTTGCAAAATCATTTCCTTAAGAATCTTAATTTGGATCATTGAAATTATACTGACACAGAAAAATTATATATATTTT
Unaligned ( gi|21 ): TCATACTTTCAGTGAGGAGTTGATTTATTACAAACTTCTACAATACATGGGACAAGATCAAAGTTCCTGGGTACTAGCAATGTATCTTCTGGGTCCTAGTATTGGTATTTTGCGTGAGTAACTAGGTATTGTATTTCCTGGGTACTATTATTTTGTAATTTTTATCCGAGGT
Unaligned ( gi|29 ): TAGTTTGAATTCATACTTTCAGTGAGCAGTTGGCTTTTTACATAAATCTAGAAAAGCTGGGACACGAACAAAGGTTCTGAATATTTATATTGTAGGACTAC
Unaligned ( gi|32 ): TAAGTTTATTTATTCATTTTTGTGCAAACTCACCAACTTATCTTGGTACAAAATAAT