lowQualScore : 333333333 1111 111111 33 1 55555555 1111 3 333333333 1 33333 22222222 2 3 1111 1 44 222 111 1111111 1 3333 222222 1 2 11 1 111 2 1 22222 1 1 111 1 1111111 33333333 2 22 222 1 1 22 2
lowQualScore : 666666666 3333 888888 6 2 6 6 22 6 6 6 8 6 11111111 6666 0 000000000 5 11111 22222222 8 8 3 0 8888 8 5 6 3 22 1 5 5 4 888 5 888 5 8888888 77 0 77 5 5 5 1 5 5 2222 5 5 4 444444 5 1 4 2 5 5 7 0 11 6 6 5 777 3 6 3 4 44444 66 4 4 4 7 5 5 000 1 5 1111111 00000000 0 1 55 777 7 3 77 999 3 0
lowQualScore : ......... .... ...... . . . . .. . . . . . ........ .... . ......... . ..... ........ . . . . .... . . . . .. . . . . ... . ... . ....... .. . .. . . . . . . .... . . . ...... . . . . . . . . .. . . . ... . . . . ..... .. . . . . . . ... . . ....... ........ . . .. ... . . .. ... . .
lowQualScore : 444444444 5555 777777 5 5 7 7 77 7 7 7 0 7 22222222 8888 0 222222222 0 00000 44444444 0 0 2 2 0000 0 0 7 3 55 4 7 7 3 777 7 111 7 6666666 99 1 99 7 7 7 4 7 7 7777 7 7 4 222222 7 9 5 8 0 0 3 0 00 7 7 5 222 7 7 3 4 11111 11 4 4 3 1 4 7 111 4 7 7777777 66666666 6 1 00 888 8 3 88 666 3 8
consensus : GTCTTCCTCGA-ACAAT--CT--A-CACATTCTCCGTCCCTTTGGTA--TT--CTNACAACTNCG-ATCGTTTTCT--GGTGAC-GACCTGTGTCCGTCTG-GGTG-CTTTA-CATCCAACCTAGTGACACGATCC-C-CTAN-AGCAAGGGCA--GCTGGT-GAGAGACTCAA---AGGGCGCCTCCCGATCCCC-GAACACTGC-T--CC-AAA-GCTCTTG-ATTCTTTG-TCTGCAGGCTG-GTCAG--ACC-CCTTGTCGGACAA-GTTCAT-CTGCCTTTCTCTTAACT--CCAGCGAGACTTGGCGAAGTCTT-CT-TCCTGACGAC---CT-TAC-GAAC-TTCCA--NTT--TTGCTTC--ATATAT--A-A-GATC-ACCTG-GGTCA-TC-TAAATTGCCA-TT-AGGAATCACAGTCAATC-AA-TCTTCCATAACTACAGCTAACGAGCTTTGTG-TGG-CATTTTTAATCCCGCAGGTT--CA-A-TCAAAAAGATTTCACAACCA-G-TGCGTT-ATCGGTTTTC-T--G--A--CTTTTCGT-ATCC-CTGCCATTGACTAAATGGT-CC-T-TAACAATCC-GTATC-GACAG-G-G---GCAGG--CGTGTTCTTGTCCAGAGGACAAATCATATCACTCCTTGTGAGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-T-AAACATTCCTAATTGA-CCTCAA-GTTGGA-G-CTCATGTT-CAGTTCCTCCAACATACATTT
Reference ( gi|6 ) : GTCTTCCTCGG-A-AAT--CT--A-CACATTCTCCGTCCCTTTGGTA--TT--CTAACAACTGCG-ATCGGTTTCTC-GGTGAC-GACCTGTGTCCGTCTG-GGTG-CTTTA-CATCCAACCTAGTGACACGATCCACGTTAG-AGCAAGGGCA--GCTGGTCGAGAGACTCAA---AGGGTGCCGTTCGAT--C--GAACACTGC-T--CC-AAA-GCTCTTG-ATTCTTTGCTCTGCAGGCTGAGTCAG--A-C-CCTTGTCGGACAA-GTTCAT-CTGCCTTTCTCTTAACTGCCCAGCGAGACTTGGTGAAGTCCT-CT-TCCTGACGACG--CT-TAC-GAAC-TTCCA--TTT--TTGCTTC--ATATAT--A-A-GATC-ACCTG-GGTCA-TC-TAAAATGCCA-TT-AGAAATCACAGTCAATC-AA-TCTTCCATAACTACAGCTAGCGAACTTTGTG-TGG-CATTTTTAATCCCGCAGGTT--CA-A-TCAAAAAGATTTCACCAACATG-TGCGTT-ATCGGTTTTC-T--G--A--CTTTTCGT-ATCC-CTGCCATT-ACTAAATGGT-CC-T-TAACAATCC-GTATC-GACAG-G-G---GCAGG--CGTGTTCTTGTCCAGCGGACAAATCATATCACTCCTTGTGAGGAAATGATATTGTCTCCTTCAGGCTGATTCTGCT-AAACA-TCCTAATTGA-CCTCAATGTTGGA-G-CTCATGTTCCAGTTCCTCCAACATACATTT
gi|4 : GTCTTCCTCGC-ACAAT--CT--AACACATTCTCCGTCCCTTTGGTA--TT--TCTACAACTGCG-ATCGGTTTTCT-GGTGAC-GACCTGTGTCCGTCTGCGGTG-CCTTA-CATCCAACCTAGTGACACGATCCAC--TAA-TGCAAGGGCA--GCTGGT-GAGAG--TCAA---AGGGTGCCGTTCGAT--CC-GAACACTGCCT--CC-AAAAGCTCTTGGATTCTTTG-TCTGCAGGCTGAGTCAG--ACC-CCTTGTC-GACAA-GTTCAT-CTGCCTTTCTCTTAACTGCTCAGCGAGACTTGGTGAAGTCTT-CT-TCCTGACGACA--CTGTAC-G-AC-TTCCA--TTTTGTTGCTTC--ATATAT--ACA-GATC-ACCTGCGGTCA-TC-TAAATTGCCA-TTAAGAAATCACAGTCAATT-CA-TCTTCCATAACTACAGCCTACGAACTTTGTG-TGGCCATTTTTAATCCC-CAGGTTCACA-A-TCAAAAAGATTTCACCAACATG-TGCGTTAATCGGTTTTCTT--G--A--CTTTTCGT-ATCC-CTG-CATT-ACT-AATGGT-CC-C-TTACAATCCGGTATC-GACAG-GCG---GCAGG---GTGTTCTTGTCCAG-GGACAAATCATATCACTCCTTGT-AGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-T-AAACATTCCTAATTGA-CCTCAA--TTGGAGG-CTCATGTTCCAGTTCCTCCAACATACATTT
gi|11 : tGTCTTCCTCCA-C-ACTTTCT--A-CACATTCTCCGCCCCTCTGATACTTT--CTTACAACTCTG-ATCGTATTCT--GGTGGC-GACCTGTGTCTGTCTG-GGTG-CTT-A-CATCCAATCTAGTGACTCGATCT---CTAC-AGCAAGGGCA--G-TGAT-GTGAGACC--A---AGGGCGCCTCCTGAT--CCGGAACACTGT-T--C--AAA-GCTCTTA-ATTCTTTGTT-TGCAGGCTG-GTCAG--A-CACCTTGTCG-ACAA-GCTCAT-CTGCCTTTCTCT-AACT--CCAAGGAGACTTGGCGAAGTCTT-CT-TTCTGACGACT--CT--AC-CTAC-TTCCA--GTT--CTGCTTC--ATGTAT--A-A-TATC-ACCTG-GATCA-TC-T----TGCCA-TT-CAGAATCACAGTCA--C-CA-TCTTCCATTATTACAGCTAACGAGCTTTGTG-GGA-TATTTTttgcc
gi|23 : GTCTTCCTCGACA-AATT-CT--A-CACATTCTCCGTCCCTTTGGTA--TTTTCTAACAACTCGG-ATCGTTTTCT--GGTGAC-GACCTGTGTCCGTCTG-GGTG-C-TTA-CATCCAACCTAGTGACACGATCC---CTAT-AGCAAGGGCA--G-TGGT-GAGAGA-TC-A---AGGGTGCC
gi|15 : GTCTTCTTCGA-A-TTT--CTCCA-CGCACCCTCCCTCCCATTGGTATTTT--CTGATGA-TGCGTACCGTTTTCT--GATGACTGACGCGTGT-TGTCTG-GGTA-C--TAGCATCTAACATA--AGCAC--TTGATGTTTGCAACACGGGCAATGCTGt
gi|5 : TCTTCCTCGA-CCAAT--CT--AACACATTCTCCGTCCCTTTGGTA--TT--CTAACAACTGCG-ATC-GTTTCTCTGGTGAC-GACCTGTGTCCGTCTG-GGTGCCTTTA-CATCCAACCTAGTGACACGATTCCC--TAA-TGCAAGGGCA--GCTGGTCGAGAGA-TCAA---AGGGTGCC-TTCGATCCC--GAACACTGC-T--CCAAAA-GCTCTTG-ATTCTTTGCTCTGCAGGCTG-GTCAG--ACC-CCTTGTCGGACAACGTTCATGCTGCCTTTCTCTTAACT--CCAGCGAGACTTGGTGAAGT-CT-CT-TCCTGAC-AC---CT-TAC-GAACTTTCCA--TTTG-TTGCTTC--ATATATACA-A-GATC-ACCTGCGGTCA-TC-TAAATTGCCA-TT-AG-AATCACAGTC-ATCAAA-TCTTCCATAACTACAGCTA-CGAACTTTGTGTTGG-CATTTTTAATCCCGCAGGTT--CACA-TC-AAAAGATTTCACAACCATGCTGCGTT-ATCGGTTTTC-TTGA--A--CTTTTCGT-ATCC-CTGCCATTGACT-AATGGTCCC-T-TAACAATCC-GTATC-GACAGAG-G---GCAGG--TG---TCTTGTCCAGAGGACAAATCATATCACTCCTTGT-AGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-T-AAACATTCCTAATTGACCCTCAAT-TTGGA-G-CTCATGTT-CAGTTCCTCCAACATACATTTcaatgacacctgtttctcgtcattggatatccgaaatctctgttcgcttgaaactgtgttcactgcttccacttcttctgctcacttgactgctctacggtctgaattcctgcatgcaggtccgtttatctttct
gi|8 : T--CT--A-TACATTCTCCGTCCCTATGATA--TTTTCTTACAACTCTG-ATCGTTTTCT--GGTGGC-GACCTGTGTCCGTCTG-GGTG-C-TTA-CATCCAACCTAGAGACTCGATCT---CTAC-AGCAAAGGCA--A-TGAT-GAGAGAC-CAAGCTAGGGCGCCTCCTGATCCC--GAACACTG--TGACC-ATA-TCTTTCG-ATTCATTG-TCTGCAGGTTG-GTCAGGCA-C-CCTTTT--GACAA-GCTCAT-CTGCCTTTCTTTTAACT--CCAGTGAGACTTGGTGAAATCTT-CT-TTCTGACGACT--C--TAC-CGAC-TTCCA--GTT--CTGCTTCATATATAT--A-A-GATC-ACCTG-GATCA-TC-T----TGCCA-TT-TAGAATCACAGTC-ATC--A-TCTTCCATTACCACAGCTAACGAGCTTTGTG-GGA-CATTTGT-ATCCC-CAGGTT--CA-A-TC--AAAGATCTCACATCCA-G-TGCGTT-ACTGGTTTTC-T--GAAA--CTGTTCGT-ATCC-CT-CCATT-ACT-AATGGT-CC-C-TTACAATTC-GTATC-GACAG-G-G---GCAGGTACATGTATCTGTCCAG-G-------------ACTCCTTG-GAGGAAATGACATTGTCTCCTTCATGCCGACTCTGT---AACA-TCCTAAGTGACCCTCAA-GCTGGA-A-CTCATGTT-CAGTCCCTCCAACATACATTTttc
gi|10 : tctccctcaacacttGAT--C--GAACACTGT-C--CA-AAA-GCTCTTG-ATTCTTTG-TCTGCAGGCTG-GTCAG--A-C-CCTTGTCGGACAA-GTTCATGCTGCCTTTCTCTTAACT--CCAGCGAGACTTGGTGAAGTCCTTCT-TCCTGAC-ACGACTT-TACCGAAC-TTCCAGTTTT--TTGCTTC--ATATAT--A-AAGATC-ACCTG-GGTCAATC-TAAA-TGCCAATT-AGAAATCACAGTCATTC-AAATCTTCCATAACTACAGCTA-CGA-CTTTGTG-TGG-CATTTTTAATCCCGCAGGTT--CA-AATCAAAAAGATTTCACAACCA-G-TGCGTTAATCGGTTTTC-T--G--A--CTTTTCGT-ATCC-CTG-CATTGACTAAATGGT-CC-T-TAACAATCCGGTATC-GACA--G-G---GCAGG--TG---TCTTGTCCAGAGGACAAATCATATCACTCCTTG-GAGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-T-AAACA-TCCTAATTGA-CCTCAA-GTTGGA-GCCTCATGTT-CAGTTCCTCCAACAT-CATTTt
gi|21 : ctCAA-GTTCAT-CTGCCTTTCTCTTAACT--CCAGCGAGACTTGGTGAAGTCTT-CT-TCCTGACGAC---TT-TAC-CGAC-TTCCA--GTT--TTGCTTC--ATATAT--A-A-GATC-ACCTG-GGTCA-TCTTAAATTGCCA-TT-AAGAATCACAGTC-ATC--A-TCTTCCATAACTACAGCTAACGAACTTTGTG-TGG-CATTTTTAttc
gi|25 : TGGCGAAATCTT-CTATTCTGACGAT---CT-TACCGATC-TTCCA---------GCT----AT-CAT--A-A-GATCCACCTG-GATCA-CC-TG----GCCA-TC-AGACTTCACtc
gi|29 : -AA-TCTTCCATCACTACAGTTGACATGCTTTGTG-TGG-CATTTCTcacactacagttgacgtaacttt
gi|26 : atAACGAACTTTGTG-TGG-CATTTTT-ATCCC-CAGGTT--CA-A-TC--AAAGATTTCACAACCA-G-TGCGTT-ATCGGTTTTC-T--GAAA--CTTTTCGT-ATCC-CTtttt
gi|28 : n-A-TCAAAA-GATTTCACAACCA-G-TGCGTT-ATCGATTTTC-T--GAAA--CTTTTCGT-ATCC-C
gi|2 : agTTTC-T--G--A--CTTTTCGT-ATCC-CTGCCATT-ACTAAATGGT-CC-T-TAACAATCC-GTATC-GACAG-G-G---GCAGG--CGTGTTCTTGTCCAGCGGACAAATCATATCACTCCTTGTGAGGAAATGATATTGTCTCCTTCAGGCTGATTCTGCT-AAACA-TCCTAATTGA-CCTCAATGTTGGA-G-CTCATGTTCCAGTTCCTCCAACATACATTT
gi|9 : TTTC-TTGA--A--CTTTTCGT-ATCC-CTGCCATTGACTAA-TGGT-CCCT-TAACAATCC-GTATC-GACAGAG-G---GCAGG--TGT---CTTGTCCAGAGGACAAATCATATCACTCCTTGT-AGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-T-AAACATTCCTAATTGACCCTCAAT-TTGGA-G-CTCATGTT-CAGTTCCTCCAACATACATTTttgcctaaaggtttacatctgacttacatttcattagtttcgcgaaatctgaacctaagataccgtcagtacttatgtctgctacaacgcctcaaaagttgaactcatggatcacccaactcaagtgaaatgttgcacattgcccgtgtacttcaatgtgctccaatcagggttatctattttctctgtgtcacgggcattaagatcacacgttagtttcatcctagagttgtgattctcaaaatgttttactcgacagaaattgcgtccagagttaatcaacccgtatcaaccaacaacgaacaaggtgcgtcgataaaaaataacccagattgaatatcaattcatgtctgagaaatcgaactccattacttgacttcccgcactttggtttacacccgggttgtctcttctttgttcactgtctccttttttgcatgtagtacgtgcatcgctttttgcttgcacgacctctgtgtttttccttttacataagcagtctttggctctgtgtcatcgcttaaccagcagttatgcacttaaaaggga
gi|3 : TTTC-T--G--AAACTTCTCATTAGCCTCCACCAT-------ATGAT-CC-GGTAACACTTC--TATCAGATGG-A-ATCAGTAGA--CGA--------CCAGAG--CAAATAATTTCACTCATGG-GCGGAATCGTTATCGTCTCCTTTAGAC---TTATGTTAAAACA-CCCTAGGTGA-CCTTGGAGCTGTA-G-CTCTTGCT-CAATCCCTCCAACATAttcctaaaggtttactcttacttacatttattgtttcagcgaaatcggaacacctaagataccgtcagtactttgtctgctacaacgcctcaagagttgaactctggattccccaactcaagtgaaatgtgcacttgcgccgctgtacttcatcggtgctccaatcagggttatctattttcttgtgtcagggcattaaatcacacgtagtttcactcctaagtgtattctcacaaatgttttgactcgacagaaattgcgtcccaggagttaatcaacccgtatcaaccaacaacgaacaaggtgcgtcgtaaaaaataacc
gi|24 : CCAG-GGACAAATCATATCACTCCTTGT-AGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-T-AAACATTCCTAATTGA-CCTCAA--TTGGAGG-CTCATGTTCCAGTTCCTCCAACATACATTTaagcttacccaaagagacatcaatgaggcatttatgttgtttaagaaatccaggccaatatttccttcagtgctgatatcggcaacgaccacgtcatgatcgaatgagaaggtgccaattgatatttggagctgacatctacctttacttgcaacggagctccatctgctaatacaatttcttgtgtaactggcatcaattccttcctgcctgtgctttcaattttccgttatacagtatgcgacaaaatcgtcatgtggcacctgtatcaaccaataaactgcacgggatctggttaatagtagcctcagtgaattatctactctggttcgagtgagagtaccgcttgcagtcggaccctttatcatctggtcgttcttcagattgttccactggtgtatttaagacatactctcttcttcttggacctgaaattctttttgctataaacagtacacggctttatgtccccgttttccacaattgtagcatttaaaagggaa
gi|7 : CCAGAGGACAAATCATATCACTCCTTG-GAGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-T-AAACA-TCCTAATTGA-CCTCAA-GTTGGA-GCCTCATGTT-CAGTTCCTCCAACAT-CATTTttgccttaaagttttactcttgact
gi|12 : CAGTTCCTCCAACATACATTTttcctaaagttttactctacttacaatttattgtttcagcgaaatctgaaacctaagataccgtcagtactttgtctgctacaacgcctcaaagttgaactctgattccccaactcaagtgaaatgtgcacttgccctgtactcatggtgctccaatcagggttactattttctctgtgtcacgggcattaaatcaccagtttcatccaagttgtgattctccaaatgtttgactcgacagaatcgtcccagagttaatcaacccgtatcaaccaacaacgaacaaggtgcgtcgtaaaaataacccagattgaatatcaattcatcgtctgagaaatcgaactcatacttgagacttcctgcaactttggtttaccccgttgtctcttttttgttcactgtctcctttttgcatgtagtagtgcatcgctttttgttgcaccgactcctcgtgtttttctttttacataagcagttctttggctctgtgtcatcgcttaaccgcagttatggccacttaaaaggga
10 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): AGCTGACCTTGGGAGTTTAGGCTCGTGTTCAATTCCTCACATGAATAAGCTTACCAAAAGAAGACATCACGAGGCATTTATAGTGTTTGAGATAAACTCCAGGCCCCAATATTCTTGTCAGTGAACTGAGTATCCGCATATGGCCACGTCTAATCGAAATGAGAAGGTTGCCAAGTGATATATGAAGCTGAGCATTACACCTTTAACTTGCAATGGATCATCCATCTGCTTAACGACAACGTATCTTGTGTCGCTTCCTGTGCTTTCAATTTTGTTTCCGAATATAATCGTATGCGACAAGAAATCGTCATAAAGTGGGGTGCACCATGATCAACGCAATACTGCAAGGGATCTGATTAAAACAGTGCCCTTAGTGAATTAATTCAGATTGAATAATCTATTACTGGCTTTGAGTGATTGTACCACTTGCAGTCCCTTGGACCCTTTATCACCAATTACCGGCCCTGGTATAAATCCGATAAGTCTTCTCAGATGTTCACTGGTTATACTTGAGCATACTATCCTTCCTTCTTGGATTGAATTCTTTTTGCTAATAACAGTACTACGGCTATGTCCATGTTTATATCACATTGTAGCATTCTAAAGGAAACTATACCAGCCACTCGGTGATGAAGACGCAAGATCCGCATGAGTTCACATGTGAGCTGCTTTGTGTTTCTTTTGGACAAAGTCAAATTGGCAATTCCTGTCCTCCATCACCTTATCAAAGAAGATTTTAATCATCACGAAGCTAGTATATGATTTCATGTTTACATCGAGCCACATTAGAATCAATCAATTCTTAAGACTCATTGTATGACGACTTGTTGGCTTCCTGGCAA
Unaligned ( gi|13 ): TTTTCCTGAAGATACATCTATCAAATATTTATTATGTTTCAAGAAATCTAAATCTAAGATGCCATCATTACTTATGTCTGCTACAACGGCCTCAAAAGTGAACTCATGATTTCCCAACTCAAAGTGAAATGTGCACTTGCCCTGTAATTGCAATGGTGCTCCATCAGCTAGTACTATTTTCTGGACCACGGGCATTAAAACAACAGTTTCACTCCTATTGAGTGTATTCTCAAAAAGCTTACTTGACAGAATCGTCAGAGTAGCACCCGTATCAACCAACAACGAACAAGGTGCTTTATTTACAATAGCC
Unaligned ( gi|14 ): ACATTTATTAGTTTTCAGCGAAATCGGAAACCTAAGATACCGTCAGTAGCTTATTCTGCTACAACGCCTCAAGAAGTTGAACTCTGATCCCCAACTCAAAGTGAAATGTTGCACATTGCGCCCTGTACTACAATCGTGCTCCATCAGGGTTACTATTTTCTGTGTCACGGGCATTAAATCACCTTAGTTTCATCCAAGTGTATTCTCAAAATGTTTACTCACAGAATTCGTCCAGAGTTATCAACCCGTATCAACCAACAACGAACAAGGTGCGTCGGTAAAAATAACC
Unaligned ( gi|16 ): GATTGAATTATCAATTCATGTCTGAGAAATCGAACTCCATTTACTTGAACTTCCGCAACTTTGGTTTACCCCGGTTGTCTCTTTTGTTGTTCACTGTCTCCTTTTTGCATGTAGTAGCTGCATCGCTTTTTGCTTGCACCGACTCCTGTGTTTTTCCTTTTACATAAGCAGTTCTGTTGGCTCTGTGTCATCGCTTACCAGCAGTTACTGGCACTTAAAAGGGA
Unaligned ( gi|17 ): TTTTTAAAACTCTGATTTTGTTTTCTGGTGGACACCTTGCGGGGACATGTTGTTCGCGTCTGGGTACTTGCATTTAAGCCCTATTTATGTGTGAGAGAGATGTCTCTACTAGCGAATGTGCAGTGATGCAGGGAGACTCTTTAATTGTCCTGTCCCTGATTTCTCGTGAATAGTTACACTGTCCAGATCTCTTTGTAATTTTTGTCTGCGGAGGAATGGTCAG
Unaligned ( gi|18 ): AATTGAATATCAATTCATGTCTGAGAACATCGCAACTCCATACTTGAGCTTCCTGCACTTTGGTTTACACCCGGTTGTCTCTTTTGTTGTTCAACTGTCTCCTTTTTTGCATGTAGTAGTGCATCGCTTTTTGTTGCAGCGACTCCTGTGTTTTTCTTTTACATAAGGCAGGTCTTTGGCTCTGTGTCATCGCTTAACCCAGTTATGGCCACTTAAAAGGGA
Unaligned ( gi|19 ): GATTGAATATCAATTCATGTCTGAGAAATCGAACTCATACTTGACTTCCTGCACTTTGGTTTACACCCGGTTGTCTCTTTTTGTTCAACTGTCTCCTTTTTGCATGTAGTAGGTGCATCGCTTTTTGTTGCACCGACCTCTGTTTTTCTTTTTACATAACAGTCTTTGGCTCTGTGTCATCGCTTACCACAGTTATGGCACTTAAAAGGGAA
Unaligned ( gi|20 ): CCATGAACCAGAATACGGTGATGAAGACGCCGACCATGTTCACTGTGCTGCTTTGTGATTTCTTTGGACAGAGTCAAATGGGCAATTTTGTCTTCCATAGCCTTCAAAGAAGTTTTAATTCATCACGAAGCTGTTTGATTTCTGGTTCACATGCACACTAGAATCCAAATCTTTAGACTCATTGTTGACACTGTTGGCTCCTCTGGCAAA
Unaligned ( gi|22 ): ACTGAATATCAATTCGTGTTTCAGAGTAATCGAACCCATATTTGACTTCATGCTCTTTGGTTTACACTCGGTTGTCTCTTTATGTTCTACTGCTTCCTTTTTGCACGTAGTAGGTGCATCGCTTTTTGTTGCACCGACCTGTTTTTCTTTTTACATGACAGTCTTTAATGGCTCTGT
Unaligned ( gi|27 ): ACATTTATTATGTTTCAAGAAATTTAAACCTAAGATGCTGTCACTGTTTATGTCTGCTACAATGGCCTCAAAAGTGAA
Alignments
lowQualScore : 2222222222 1 11 11 22222222 1111 1111111 2222222 1 1 111 11111111111 3333333 111111 11111 1 1 1 11 1 1 111 11 1 111111 111111 1 11 1 22222 1 1 1111111 22 1 1 11 1
lowQualScore : 0 5555555555 77 1 33 33 1 1 5 66 5 5 5 888 33333333 5 66 5 3333 5 66 6666666 0 5 0000000 66 66 66 5 1 000 77777777777 3 6 2222222 666666 55555 66 5 5 77 1 77 5 1 6 6 5 1 55 2 5 5 66 0 5 0 0 5 222 9999 66 11 5 5 0 5 333333 5 44 5 777777 4 6 4 4 4 4 5 6 33 5 1 7 5 5 5 88888 8 5 5 5 5 5 5 1 5 4444444 7 00 8 7 2 4 33 8 8 4
lowQualScore : . .......... .. . .. .. . . . .. . . . ... ........ . .. . .... . .. ....... . . ....... .. .. .. . . ... ........... . . ....... ...... ..... .. . . .. . .. . . . . . . .. . . . .. . . . . . ... .... .. .. . . . . ...... . .. . ...... . . . . . . . . .. . . . . . . ..... . . . . . . . . . ....... . .. . . . . .. . . .
lowQualScore : 7 4444444444 99 4 88 88 0 0 0 99 0 0 0 888 11111111 0 99 0 5555 0 99 2222222 8 0 2222222 00 99 99 0 4 000 66666666666 7 7 4444444 444444 66666 44 7 7 99 4 99 7 4 7 7 7 4 77 0 0 0 99 0 0 0 4 0 888 6666 99 99 0 0 0 0 666666 0 55 0 999999 9 4 0 6 4 4 0 7 66 0 4 1 7 7 7 66666 6 0 0 7 7 7 7 4 7 7777777 1 66 0 0 0 0 00 0 0 5
consensus : GTCTTCCTCGA-A---CAA--T--CTA-CACATTCTCCGTCCCTTTGGTA--TT--CTNACAACTNCG-ATC--G-TTT-TCT-GGTG---AC--------GACCTGT-GTCCG--TCTG-GGTGC-TTTA-CATCCAA--CCTA-------GTGACAC-GAT-CCCC--TAC-AGCAA--GGGCA--GCTGGT-G---AGAGACTC---AA---AGGGCGCCTCCC-GATCCC----GAA------CACTGC-T--CC-AAA-GCTCTTG-AT--TCTTTG-TCTGC--AGG-CTG-GTCAGAC-CCCTTGTCGGACAA-GTTCAT-CTGCCTTTCTCTTAACT--CCAGCGAGACTTGGTGAAGT-CTTCT-TCCTG--ACGAC-CT-TA-CGAAC-TTCCA--TTT-T--TGCTTC--ATATAT--A-AGAT-CACCTG-GGTC-ATC-TAAATTGCC-ATTAGGAA-TCACAGTCAATC-AATCTTCCATAACTACAGCTAACG-AACTTTGTG-TGGC-ATTTTTAATCCCGCAGGTTC-A--ATCAAAAAGATTTCACAACCATG-TGCGTT-A-TCGGTTTTCT--G--ACTTTTCGTATCCCTGCCATTGACTAAATGGT-CC-TTAACAATCC-G-TATCGACAG-G-GGCAGG--CGTGTTCTTGTCCAGAGGACAAATCATATCACTCCTTGTGAGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACATTCCTAATTGA-CCTCA-A-GTTGGA-G-CTCATGTTCCAGTTCCTCCAACATACATTT
Reference ( family-4137 ) : GTCTTCCTCGA-A---CAA--T--CTA-CACATTCTCCGTCCCTTTGGTA--TT--CTNACAACTNCG-ATC--G-TTT-TCT-GGTG---AC--------GACCTGT-GTCCG--TCTG-GGTGC-TTTA-CATCCAA--CCTA-------GTGACAC-GAT-CCCC--TAN-AGCAA--GGGCA--GCTGGT-G---AGAGACTC---AA---AGGGCGCCTCCC-GATCCCC---GAA------CACTGC-T--CC-AAA-GCTCTTG-AT--TCTTTG-TCTGC--AGG-CTG-GTCAGAC-CCCTTGTCGGACAA-GTTCAT-CTGCCTTTCTCTTAACT--CCAGCGAGACTTGGCGAAGT-CTTCT-TCCTG--ACGAC-CT-TA-CGAAC-TTCCA--NTT-T--TGCTTC--ATATAT--A-AGAT-CACCTG-GGTC-ATC-TAAATTGCC-ATTAGGAA-TCACAGTCAATC-AATCTTCCATAACTACAGCTAACG-AGCTTTGTG-TGGC-ATTTTTAATCCCGCAGGTTC-A--ATCAAAAAGATTTCACAACCA-G-TGCGTT-A-TCGGTTTTCT--G--ACTTTTCGTATCCCTGCCATTGACTAAATGGT-CC-TTAACAATCC-G-TATCGACAG-G-GGCAGG--CGTGTTCTTGTCCAGAGGACAAATCATATCACTCCTTGTGAGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACATTCCTAATTGA-CCTCA-A-GTTGGA-G-CTCATGTT-CAGTTCCTCCAACATACATTT
gi|10 : C---GAA------CACTGT-C--CA-AAA-GCTCTTG-AT--TCTTTG-TCTGC--AGG-CTG-GTCAGA--CCCTTGTCGGACAA-GTTCATGCTGCCTTTCTCTTAACT--CCAGCGAGACTTGGTGAAGTCCTTCT-TCCTGACACGAC-TT-TACCGAAC-TTCCAGTTTT-T--TGCTTC--ATATATA-A-AGAT-CACCTG-GGTCAATC-TAAA-TGCCAATTAGAAA-TCACAGTCATTCAAATCTTCCATAACTACAGCT-ACG-A-CTTTGTG-TGGC-ATTTTTAATCCCGCAGGTTCAA--ATCAAAAAGATTTCACAACCA-G-TGCGTTAA-TCGGTTTTCT--G--ACTTTTCGTATCCCTG-CATTGACTAAATGGT-CC-TTAACAATCCGG-TATCGACA--G-GGCAGG--TG---TCTTGTCCAGAGGACAAATCATATCACTCCTTG-GAGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACA-TCCTAATTGA-CCTCA-A-GTTGGA-GCCTCATGTT-CAGTTCCTCCAACAT-CATTT
gi|11 : ctgatGTCTTCCTCCACA---CTT--T--CTA-CACATTCTCCGCCCCTCTGATACTTT--CTTACAACTCTG-ATC--G-TAT-TCT-GGTG---GC--------GACCTGT-GTCTG--TCTG-GGTGC-TT-A-CATCCAA--TCTA-------GTGACTC-GAT-CTC---TAC-AGCAA--GGGCA--G-TGAT-G---TGAGACC-----A---AGGGCGCCTCCT-GATCCG----GAA------CACTGT-T--C--AAA-GCTCTTA-AT--TCTTTG-TTTGC--AGG-CTG-GTCAGAC-ACCTTGTCG-ACAA-GCTCAT-CTGCCTTTCTCT-AACT--CCAAGGAGACTTGGCGAAGT-CTTCT-TTCTG--ACGAC-TC-TA-CCTAC-TTCCA--GTT-C--TGCTTC--ATGTAT--A-ATAT-CACCTG-GATC-ATC-----TTGCC-ATTCAGAA-TCACAGTCA--C-CATCTTCCATTATTACAGCTAACG-AGCTTTGTG-GGAT-ATTTTttc
gi|12 : -CAGTTCCTCCAACATACATTT
gi|15 : GTCTTCTTCGA-ATTTC----T--CCA-CGCACCCTCCCTCCCATTGGTATTTT--CTGATGA-TGCGTACC--G-TTT-TCT-GATG---ACT-------GACGCGT-GT-TG--TCTG-GGTAC---TAGCATCTAA--CATA-------AGCACTT-GAT--GTT--TGC-AACAC--GGGCAATGCTGttcctaaagttacatctacttaacatttattgtttcacgaaatctgaaacctaagataccgtcagtactttgtctgctacaacgcctcaaagttgaactctgattccccaactcaagtgaaatgtgcacttgccctgtacttacaatggtgctccatcagggttactattttctgtgtcacgggcattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacccgtatcaaccaacaacgaacaaggtgcgtcgttaaaaataacc
gi|17 : --TT--TTTAAAACTCTG-ATTTTG-TTT-TCT-GGTGGACACCTTGCGGGGACATGTTGTTCGCGTCTG-GGTAC-TT-G-CATTTAAGCCCTATTTATGTGTGAGAGAGATGTCTC--TACTAGCGAATGTGCA--G-TGAT-GCAGGGAGACTCTTTAA---TTGTCCTGTCCCTGATTTCTCGTGAATAGTTACACTG--T--CC-AGA-TCTCTTT-GTAATTTTTG-TCTGCGGAGGAATG-GTCAGcaatgacacctgtttctcgtcattggatatccgaaatctctgttcgcttgaaactgtgttcactgcttccacttcttctgctcacttgactgctctacggtctgaattcctgcatgcaggtccgtttatctttct
gi|2 : TTTCT--G--ACTTTTCGTATCCCTGCCATT-ACTAAATGGT-CC-TTAACAATCC-G-TATCGACAG-G-GGCAGG--CGTGTTCTTGTCCAGCGGACAAATCATATCACTCCTTGTGAGGAAATGATATTGTCTCCTTCAGGCTGATTCTGCTAAACA-TCCTAATTGA-CCTCA-ATGTTGGA-G-CTCATGTTCCAGTTCCTCCAACATACATTT
gi|21 : CAA-GTTCAT-CTGCCTTTCTCTTAACT--CCAGCGAGACTTGGTGAAGT-CTTCT-TCCTG--ACGAC-TT-TA-CCGAC-TTCCA--GTT-T--TGCTTC--ATATAT--A-AGAT-CACCTG-GGTC-ATCTTAAATTGCC-ATTAAGAA-TCACAGTC-ATC--ATCTTCCATAACTACAGCTAACG-AACTTTGTG-TGGC-ATTTTTAttgcctaaaggtttacatctgacttacatttcattagtttcgcgaaatctgaacctaagataccgtcagtacttatgtctgctacaacgcctcaaaagttgaactcatggatcacccaactcaagtgaaatgttgcacattgcccgtgtacttcaatgtgctccaatcagggttatctattttctctgtgtcacgggcattaagatcacacgttagtttcatcctagagttgtgattctcaaaatgttttactcgacagaaattgcgtccagagttaatcaacccgtatcaaccaacaacgaacaaggtgcgtcgataaaaaataacccagattgaatatcaattcatgtctgagaaatcgaactccattacttgacttcccgcactttggtttacacccgggttgtctcttctttgttcactgtctccttttttgcatgtagtacgtgcatcgctttttgcttgcacgacctctgtgtttttccttttacataagcagtctttggctctgtgtcatcgcttaaccagcagttatgcacttaaaaggga
gi|23 : GTCTTCCTCGA-----CAAATT--CTA-CACATTCTCCGTCCCTTTGGTA--TTTTCTAACAACTCGG-ATC--G-TTT-TCT-GGTG---AC--------GACCTGT-GTCCG--TCTG-GGTGC--TTA-CATCCAA--CCTA-------GTGACAC-GAT--CCC--TAT-AGCAA--GGGCA--G-TGGT-G---AGAGA-TC----A---AGGGTGCCTtc
gi|24 : CCAG-GGACAAATCATATCACTCCTTGT-AGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACATTCCTAATTGA-CCTCA-A--TTGGAGG-CTCATGTTCCAGTTCCTCCAACATACATTT
gi|25 : TGGCGAAAT-CTTCTATTCTG--ACGAT-CT-TACCGATC-TTCCA----------GCT----AT-CAT--A-AGATCCACCTG-GATC-ACC-TG----GCC-ATCAG------AC--T---TC-A-----CCAC-ACTACAGTTGACGTAACTTTttgccttaaagttttactcttgact
gi|26 : AACG-AACTTTGTG-TGGC-ATTTTTA-TCCC-CAGGTTC-A--ATCAAA--GATTTCACAACCA-G-TGCGTT-A-TCGGTTTTCT--GAAACTTTTCGTATCCCT
gi|28 : n--ATCAAAA-GATTTCACAACCA-G-TGCGTT-A-TCGATTTTCT--GAAACTTTTCGTATCCC
gi|29 : ag-AATCTTCCATCACTACAGTTGACA-TGCTTTGTG-TGGC-ATTTCT
gi|3 : atCCAGAG--CAAATAATTTCACTCATGG-GCGGAATCGTTATCGTCTCCTTTAGACTTATGTTA--AAACAC-CCTAGGTGA-CCTTGGA-GCTGTA-G-CTCTTGCT-CAATCCCTCCAACATAtttt
gi|4 : tttctgaaacttctcattagcctccaccatatgatccggtaacacttctatcagatggaatcagtagacgaGTCTTCCTCGC-A---CAA--T--CTAACACATTCTCCGTCCCTTTGGTA--TT--TCTACAACTGCG-ATC--GGTTT-TCT-GGTG---AC--------GACCTGT-GTCCG--TCTGCGGTGC-CTTA-CATCCAA--CCTA-------GTGACAC-GAT-CCAC--TAA-TGCAA--GGGCA--GCTGGT-G---AGAG--TC---AA---AGGGTGCCGTTC-GATCC-----GAA------CACTGCCT--CC-AAAAGCTCTTGGAT--TCTTTG-TCTGC--AGG-CTGAGTCAGAC-CCCTTGTCG-ACAA-GTTCAT-CTGCCTTTCTCTTAACTGCTCAGCGAGACTTGGTGAAGT-CTTCT-TCCTG--ACGACACTGTA-CGA-C-TTCCA--TTT-TGTTGCTTC--ATATAT--ACAGAT-CACCTGCGGTC-ATC-TAAATTGCC-ATTAAGAAATCACAGTCAATT-CATCTTCCATAACTACAGCCTACG-AACTTTGTG-TGGCCATTTTTAATCCC-CAGGTTC-ACAATCAAAAAGATTTCACCAACATG-TGCGTT-AATCGGTTTTCTT-G--ACTTTTCGTATCCCTGC-ATT-ACTAA-TGGT-CC-CTTACAATCC-GGTATCGACAG-GCGGCAGG---GTGTTCTTGTCCAG-GGACAAATCATATCACTCCTTGT-AGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACATTCCTAATTGA-CCTCA-A--TTGGAGG-CTCATGTTCCAGTTCCTCCAACATACATTTaagcttacccaaagagacatcaatgaggcatttatgttgtttaagaaatccaggccaatatttccttcagtgctgatatcggcaacgaccacgtcatgatcgaatgagaaggtgccaattgatatttggagctgacatctacctttacttgcaacggagctccatctgctaatacaatttcttgtgtaactggcatcaattccttcctgcctgtgctttcaattttccgttatacagtatgcgacaaaatcgtcatgtggcacctgtatcaaccaataaactgcacgggatctggttaatagtagcctcagtgaattatctactctggttcgagtgagagtaccgcttgcagtcggaccctttatcatctggtcgttcttcagattgttccactggtgtatttaagacatactctcttcttcttggacctgaaattctttttgctataaacagtacacggctttatgtccccgttttccacaattgtagcatttaaaagggaa
gi|5 : tTCTTCCTCGA-C---CAA--T--CTAACACATTCTCCGTCCCTTTGGTA--TT--CTAACAACTGCG-ATC--G-TTTCTCT-GGTG---AC--------GACCTGT-GTCCG--TCTG-GGTGCCTTTA-CATCCAA--CCTA-------GTGACAC-GAT-TCCC--TAA-TGCAA--GGGCA--GCTGGTCG---AGAGA-TC---AA---AGGGTGCCT-TC-GAT-CCC---GAA------CACTGC-T--CCAAAA-GCTCTTG-AT--TCTTTGCTCTGC--AGG-CTG-GTCAGAC-CCCTTGTCGGACAACGTTCATGCTGCCTTTCTCTTAACT--CCAGCGAGACTTGGTGAAGT-C-TCT-TCCTG--AC-AC-CT-TA-CGAACTTTCCA--TTTGT--TGCTTC--ATATATACA-AGAT-CACCTGCGGTC-ATC-TAAATTGCC-ATTA-GAA-TCACAGTC-ATCAAATCTTCCATAACTACAGCT-ACG-AACTTTGTGTTGGC-ATTTTTAATCCCGCAGGTTC-AC-ATC-AAAAGATTTCACAACCATGCTGCGTT-A-TCGGTTTTCTTGA--ACTTTTCGTATCCCTGCCATTGACT-AATGGTCCC-TTAACAATCC-G-TATCGACAGAG-GGCAGG--TG---TCTTGTCCAGAGGACAAATCATATCACTCCTTGT-AGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACATTCCTAATTGACCCTCA-A-TTTGGA-G-CTCATGTT-CAGTTCCTCCAACATACATTTttgcc
gi|6 : GTCTTCCTCGG-A----AA--T--CTA-CACATTCTCCGTCCCTTTGGTA--TT--CTAACAACTGCG-ATC--G-GTT-TCTCGGTG---AC--------GACCTGT-GTCCG--TCTG-GGTGC-TTTA-CATCCAA--CCTA-------GTGACAC-GAT-CCACGTTAG-AGCAA--GGGCA--GCTGGTCG---AGAGACTC---AA---AGGGTGCCGTTC-GATC------GAA------CACTGC-T--CC-AAA-GCTCTTG-AT--TCTTTGCTCTGC--AGG-CTGAGTCAGAC-CC-TTGTCGGACAA-GTTCAT-CTGCCTTTCTCTTAACTGCCCAGCGAGACTTGGTGAAGT-CCTCT-TCCTG--ACGACGCT-TA-CGAAC-TTCCA--TTT-T--TGCTTC--ATATAT--A-AGAT-CACCTG-GGTC-ATC-TAAAATGCC-ATTAGAAA-TCACAGTCAATC-AATCTTCCATAACTACAGCTAGCG-AACTTTGTG-TGGC-ATTTTTAATCCCGCAGGTTC-A--ATCAAAAAGATTTCACCAACATG-TGCGTT-A-TCGGTTTTCT--G--ACTTTTCGTATCCCTGCCATT-ACTAAATGGT-CC-TTAACAATCC-G-TATCGACAG-G-GGCAGG--CGTGTTCTTGTCCAGCGGACAAATCATATCACTCCTTGTGAGGAAATGATATTGTCTCCTTCAGGCTGATTCTGCTAAACA-TCCTAATTGA-CCTCA-ATGTTGGA-G-CTCATGTTCCAGTTCCTCCAACATACATTTttc
gi|7 : CCAGAGGACAAATCATATCACTCCTTG-GAGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACA-TCCTAATTGA-CCTCA-A-GTTGGA-GCCTCATGTT-CAGTTCCTCCAACAT-CATTT
gi|8 : TCTCCCTC-A-A---CAC--TTTCTA-TACATTCTCCGTCCCTATGATA--TTTTCTTACAACTCTG-ATC--G-TTT-TCT-GGTG---GC--------GACCTGT-GTCCG--TCTG-GGTGC-TT-A-CATCCAA--CCTA-------GAGACTC-GAT-CTC---TAC-AGCAA--AGGCA--A-TGAT-G---AGAGAC-C---AAGCTAGGGCGCCTCCT-GATCCC----GAA------CACTG--TGACC-ATA-TCTTTCG-AT--TCATTG-TCTGC--AGG-TTG-GTCAGGCACCCTTTT--GACAA-GCTCAT-CTGCCTTTCTTTTAACT--CCAGTGAGACTTGGTGAAAT-CTTCT-TTCTG--ACGAC-TC-TA-CCGAC-TTCCA--GTT-C--TGCTTCATATATAT--A-AGAT-CACCTG-GATC-ATC-----TTGCC-ATTTAGAA-TCACAGTC-ATC--ATCTTCCATTACCACAGCTAACG-AGCTTTGTG-GGAC-ATTTGT-ATCCC-CAGGTTC-A--ATC--AAAGATCTCACATCCA-G-TGCGTT-A-CTGGTTTTCT--GAAACTGTTCGTATCCCT-CCATT-ACT-AATGGT-CC-CTTACAATTC-G-TATCGACAG-G-GGCAGGTACATGTATCTGTCCAGG--------------ACTCCTTG-GAGGAAATGACATTGTCTCCTTCATGCCGACTCTG-T-AACA-TCCTAAGTGACCCTCA-A-GCTGGA-A-CTCATGTT-CAGTCCCTCCAACATACATTTttcctaaagttttactctacttacaatttattgtttcagcgaaatctgaaacctaagataccgtcagtactttgtctgctacaacgcctcaaagttgaactctgattccccaactcaagtgaaatgtgcacttgccctgtactcatggtgctccaatcagggttactattttctctgtgtcacgggcattaaatcaccagtttcatccaagttgtgattctccaaatgtttgactcgacagaatcgtcccagagttaatcaacccgtatcaaccaacaacgaacaaggtgcgtcgtaaaaataacccagattgaatatcaattcatcgtctgagaaatcgaactcatacttgagacttcctgcaactttggtttaccccgttgtctcttttttgttcactgtctcctttttgcatgtagtagtgcatcgctttttgttgcaccgactcctcgtgtttttctttttacataagcagttctttggctctgtgtcatcgcttaaccgcagttatggccacttaaaaggga
gi|9 : TTTCTTGA--ACTTTTCGTATCCCTGCCATTGACTAA-TGGT-CCCTTAACAATCC-G-TATCGACAGAG-GGCAGG--TGT---CTTGTCCAGAGGACAAATCATATCACTCCTTGT-AGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACATTCCTAATTGACCCTCA-A-TTTGGA-G-CTCATGTT-CAGTTCCTCCAACATACATTTt
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): AGCTGACCTTGGGAGTTTAGGCTCGTGTTCAATTCCTCACATGAATAAGCTTACCAAAAGAAGACATCACGAGGCATTTATAGTGTTTGAGATAAACTCCAGGCCCCAATATTCTTGTCAGTGAACTGAGTATCCGCATATGGCCACGTCTAATCGAAATGAGAAGGTTGCCAAGTGATATATGAAGCTGAGCATTACACCTTTAACTTGCAATGGATCATCCATCTGCTTAACGACAACGTATCTTGTGTCGCTTCCTGTGCTTTCAATTTTGTTTCCGAATATAATCGTATGCGACAAGAAATCGTCATAAAGTGGGGTGCACCATGATCAACGCAATACTGCAAGGGATCTGATTAAAACAGTGCCCTTAGTGAATTAATTCAGATTGAATAATCTATTACTGGCTTTGAGTGATTGTACCACTTGCAGTCCCTTGGACCCTTTATCACCAATTACCGGCCCTGGTATAAATCCGATAAGTCTTCTCAGATGTTCACTGGTTATACTTGAGCATACTATCCTTCCTTCTTGGATTGAATTCTTTTTGCTAATAACAGTACTACGGCTATGTCCATGTTTATATCACATTGTAGCATTCTAAAGGAAACTATACCAGCCACTCGGTGATGAAGACGCAAGATCCGCATGAGTTCACATGTGAGCTGCTTTGTGTTTCTTTTGGACAAAGTCAAATTGGCAATTCCTGTCCTCCATCACCTTATCAAAGAAGATTTTAATCATCACGAAGCTAGTATATGATTTCATGTTTACATCGAGCCACATTAGAATCAATCAATTCTTAAGACTCATTGTATGACGACTTGTTGGCTTCCTGGCAA
Unaligned ( gi|13 ): TTTTCCTGAAGATACATCTATCAAATATTTATTATGTTTCAAGAAATCTAAATCTAAGATGCCATCATTACTTATGTCTGCTACAACGGCCTCAAAAGTGAACTCATGATTTCCCAACTCAAAGTGAAATGTGCACTTGCCCTGTAATTGCAATGGTGCTCCATCAGCTAGTACTATTTTCTGGACCACGGGCATTAAAACAACAGTTTCACTCCTATTGAGTGTATTCTCAAAAAGCTTACTTGACAGAATCGTCAGAGTAGCACCCGTATCAACCAACAACGAACAAGGTGCTTTATTTACAATAGCC
Unaligned ( gi|14 ): ACATTTATTAGTTTTCAGCGAAATCGGAAACCTAAGATACCGTCAGTAGCTTATTCTGCTACAACGCCTCAAGAAGTTGAACTCTGATCCCCAACTCAAAGTGAAATGTTGCACATTGCGCCCTGTACTACAATCGTGCTCCATCAGGGTTACTATTTTCTGTGTCACGGGCATTAAATCACCTTAGTTTCATCCAAGTGTATTCTCAAAATGTTTACTCACAGAATTCGTCCAGAGTTATCAACCCGTATCAACCAACAACGAACAAGGTGCGTCGGTAAAAATAACC
Unaligned ( gi|16 ): GATTGAATTATCAATTCATGTCTGAGAAATCGAACTCCATTTACTTGAACTTCCGCAACTTTGGTTTACCCCGGTTGTCTCTTTTGTTGTTCACTGTCTCCTTTTTGCATGTAGTAGCTGCATCGCTTTTTGCTTGCACCGACTCCTGTGTTTTTCCTTTTACATAAGCAGTTCTGTTGGCTCTGTGTCATCGCTTACCAGCAGTTACTGGCACTTAAAAGGGA
Unaligned ( gi|18 ): AATTGAATATCAATTCATGTCTGAGAACATCGCAACTCCATACTTGAGCTTCCTGCACTTTGGTTTACACCCGGTTGTCTCTTTTGTTGTTCAACTGTCTCCTTTTTTGCATGTAGTAGTGCATCGCTTTTTGTTGCAGCGACTCCTGTGTTTTTCTTTTACATAAGGCAGGTCTTTGGCTCTGTGTCATCGCTTAACCCAGTTATGGCCACTTAAAAGGGA
Unaligned ( gi|19 ): GATTGAATATCAATTCATGTCTGAGAAATCGAACTCATACTTGACTTCCTGCACTTTGGTTTACACCCGGTTGTCTCTTTTTGTTCAACTGTCTCCTTTTTGCATGTAGTAGGTGCATCGCTTTTTGTTGCACCGACCTCTGTTTTTCTTTTTACATAACAGTCTTTGGCTCTGTGTCATCGCTTACCACAGTTATGGCACTTAAAAGGGAA
Unaligned ( gi|20 ): CCATGAACCAGAATACGGTGATGAAGACGCCGACCATGTTCACTGTGCTGCTTTGTGATTTCTTTGGACAGAGTCAAATGGGCAATTTTGTCTTCCATAGCCTTCAAAGAAGTTTTAATTCATCACGAAGCTGTTTGATTTCTGGTTCACATGCACACTAGAATCCAAATCTTTAGACTCATTGTTGACACTGTTGGCTCCTCTGGCAAA
Unaligned ( gi|22 ): ACTGAATATCAATTCGTGTTTCAGAGTAATCGAACCCATATTTGACTTCATGCTCTTTGGTTTACACTCGGTTGTCTCTTTATGTTCTACTGCTTCCTTTTTGCACGTAGTAGGTGCATCGCTTTTTGTTGCACCGACCTGTTTTTCTTTTTACATGACAGTCTTTAATGGCTCTGT
Unaligned ( gi|27 ): ACATTTATTATGTTTCAAGAAATTTAAACCTAAGATGCTGTCACTGTTTATGTCTGCTACAATGGCCTCAAAAGTGAA
Alignments
lowQualScore : 2222222222 1 11 11 22222222 11 1111111 2222222 1 222 11111111111 222222 111111 11111 1 1 1 1 11 1 1 111 11 1 111111 11 1111 1 11 1 22222 1 1 1 1 11111111 22 2 1 11 2
lowQualScore : 0 5555555555 77 1 33 33 1 1 5 66 5 5 5 888 33333333 5 66 5 66 3 5 66 6666666 55 0000000 66 66 66 5 111 77777777777 99 666666 666666 55555 0 1 5 77 1 77 5 1 6 6 5 1 55 5 5 66 0 5 0 0 5 333 9999 66 5 11 5 0 5 333333 5 6 5 55 2222 4 1 4 4 4 5 5 6 33 5 5 9 5 5 5 88888 8 2 1 5 5 1 5 22222222 7 00 8 0 2 4 33 8 8 0
lowQualScore : . .......... .. . .. .. . . . .. . . . ... ........ . .. . .. . . .. ....... .. ....... .. .. .. . ... ........... .. ...... ...... ..... . . . .. . .. . . . . . . .. . . .. . . . . . ... .... .. . .. . . . ...... . . . .. .... . . . . . . . . .. . . . . . . ..... . . . . . . . ........ . .. . . . . .. . . .
lowQualScore : 7 4444444444 99 4 88 88 0 0 0 99 0 0 0 888 11111111 0 99 0 22 2 0 99 2222222 88 2222222 44 99 99 0 444 66666666666 77 666666 444444 66666 7 4 7 99 4 99 7 4 7 7 7 4 77 0 0 99 0 0 0 4 0 000 6666 99 0 99 0 0 0 666666 0 5 0 88 6666 9 5 0 4 4 0 0 7 66 0 0 0 7 7 7 66666 6 0 4 7 7 4 7 99999999 1 66 0 4 0 0 00 0 0 0
consensus : GTCTTCCTCGA-A---CAA--T--CTA-CACATTCTCCGTCCCTTTGGTA--TT--CTNACAACTNCG-ATC--G-TTT-TCT-GGTG---AC--------GACCTGT-GTCCG--TCTG-GGTGC-TTTA-CATCCAA--CCTA-------GTGACA-CGAT-CCCC--TAC-AGCAA--GGGCA--GCTGGT---GAGAGACTC---AA---AGGGCGCCTCCC-GATCCC----GA------ACACTGC-T--CCAAA-GCTCTTG-AT--TCTTTG-TCTGC--AGG-CTG-GTCAGAC-CCCTTGTCGGACAA-GTTCAT-CTGCCTTTCTCTTAACT--CCAGCGAGACTTGGTGAAGT-CTTCT-TCCTG--ACGAC-CT-TA-CGAACTT-CCA--TTT-T--TGCTTC--ATATAT-A--AGAT-CACCTG-GGTC-ATC-TAAATTGCC-ATTAGGAA-TCACAGTCAATC-AA-TCTTCCATAACTACAGCTAACG-AACTTTGTGT-GGC-ATTTTTAATCCCGCAGGTTC-A--ATCAAAAAGATTTCACAACCATG-TGCGTT-A-TCGGTTTTCT--G--ACTTTTCGTATCCCTGCCATTGACTAAATGGTCC-TTAACAATCC-G-TATCGACAG-G-GGCAGG--CGTGTTCTTGTCCAGAGGACAAATCATATCACTCCTTGTGAGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACATTCCTAATTGA-CCTC-AA-GTTGGA-G-CTCATGTTCCAGTTCCTCCAACATACATTT
Reference ( family-4137 ) : GTCTTCCTCGA-A---CAA--T--CTA-CACATTCTCCGTCCCTTTGGTA--TT--CTNACAACTNCG-ATC--G-TTT-TCT-GGTG---AC--------GACCTGT-GTCCG--TCTG-GGTGC-TTTA-CATCCAA--CCTA-------GTGACA-CGAT-CCCC--TAC-AGCAA--GGGCA--GCTGGT---GAGAGACTC---AA---AGGGCGCCTCCC-GATCCC----GA------ACACTGC-T--CCAAA-GCTCTTG-AT--TCTTTG-TCTGC--AGG-CTG-GTCAGAC-CCCTTGTCGGACAA-GTTCAT-CTGCCTTTCTCTTAACT--CCAGCGAGACTTGGTGAAGT-CTTCT-TCCTG--ACGAC-CT-TA-CGAACTT-CCA--TTT-T--TGCTTC--ATATAT-A--AGAT-CACCTG-GGTC-ATC-TAAATTGCC-ATTAGGAA-TCACAGTCAATC-AA-TCTTCCATAACTACAGCTAACG-AACTTTGTGT-GGC-ATTTTTAATCCCGCAGGTTC-A--ATCAAAAAGATTTCACAACCATG-TGCGTT-A-TCGGTTTTCT--G--ACTTTTCGTATCCCTGCCATTGACTAAATGGTCC-TTAACAATCC-G-TATCGACAG-G-GGCAGG--CGTGTTCTTGTCCAGAGGACAAATCATATCACTCCTTGTGAGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACATTCCTAATTGA-CCTC-AA-GTTGGA-G-CTCATGTTCCAGTTCCTCCAACATACATTT
gi|10 : CT-GATC------GA------ACACTGT-C--CAAAA-GCTCTTG-AT--TCTTTG-TCTGC--AGG-CTG-GTCAGA--CCCTTGTCGGACAA-GTTCATGCTGCCTTTCTCTTAACT--CCAGCGAGACTTGGTGAAGTCCTTCT-TCCTGACACGAC-TT-TACCGAACTT-CCAGTTTT-T--TGCTTC--ATATATAA--AGAT-CACCTG-GGTCAATC-TAAA-TGCCAATTAGAAA-TCACAGTCATTCAAA-TCTTCCATAACTACAGCT-ACG--ACTTTGTGT-GGC-ATTTTTAATCCCGCAGGTTCAA--ATCAAAAAGATTTCACAACCA-G-TGCGTTAA-TCGGTTTTCT--G--ACTTTTCGTATCCCTG-CATTGACTAAATGGTCC-TTAACAATCCGG-TATCGACA--G-GGCAGG--TG---TCTTGTCCAGAGGACAAATCATATCACTCCTTG-GAGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACA-TCCTAATTGA-CCTC-AA-GTTGGA-GCCTCATGTT-CAGTTCCTCCAACAT-CATTT
gi|11 : GTCTTCCTCCACA---CTT--T--CTA-CACATTCTCCGCCCCTCTGATACTTT--CTTACAACTCTG-ATC--G-TAT-TCT-GGTG---GC--------GACCTGT-GTCTG--TCTG-GGTGC-TT-A-CATCCAA--TCTA-------GTGACT-CGAT-CTC---TAC-AGCAA--GGGCA--G-TGAT---GTGAGACC-----A---AGGGCGCCTCCT-GATCCG----GA------ACACTGT-T--C-AAA-GCTCTTA-AT--TCTTTG-TTTGC--AGG-CTG-GTCAGAC-ACCTTGTCG-ACAA-GCTCAT-CTGCCTTTCTCT-AACT--CCAAGGAGACTTGGCGAAGT-CTTCT-TTCTG--ACGAC-TC-TA-CCTACTT-CCA--GTT-C--TGCTTC--ATGTAT-A--ATAT-CACCTG-GATC-ATC-----TTGCC-ATTCAGAA-TCACAGTCA--C-CA-TCTTCCATTATTACAGCTAACG-AGCTTTGTGG-GAT-ATTTTttc
gi|12 : CAGTTCCTCCAACATACATTT
gi|15 : GTCTTCTTCGA-ATTTC----T--CCA-CGCACCCTCCCTCCCATTGGTATTTT--CTGATGA-TGCGTACC--G-TTT-TCT-GATG---ACT-------GACGCGT-GT-TG--TCTG-GGTAC---TAGCATCTAA--CATA-------AGCACT-TGAT--GTT--TGC-AACAC--GGGCAATGCTGttcctaaagttacatctacttaacatttattgtttcacgaaatctgaaacctaagataccgtcagtactttgtctgctacaacgcctcaaagttgaactctgattccccaactcaagtgaaatgtgcacttgccctgtacttacaatggtgctccatcagggttactattttctgtgtcacgggcattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacccgtatcaaccaacaacgaacaaggtgcgtcgttaaaaataacc
gi|17 : --TT--TTTAAAACTCTG-ATTTTG-TTT-TCT-GGTGGACACCTTGCGGGGACATGTTGTTCGCGTCTG-GGTAC--TTG-CATTTAAGCCCTATTTATGTGTGAGAGAGATGTCTC--TACTAGCGAATGTGCA--G-TGATGCAGGGAGACTCTTTAA---TTGTCCTGTCCCTGATTTCTCGTGAATAGTTACACTG--T--CCAGA-TCTCTTT-GTAATTTTTG-TCTGCGGAGGAATG-GTCAGcaatgacacctgtttctcgtcattggatatccgaaatctctgttcgcttgaaactgtgttcactgcttccacttcttctgctcacttgactgctctacggtctgaattcctgcatgcaggtccgtttatctttct
gi|2 : TTTCT--G--ACTTTTCGTATCCCTGCCATT-ACTAAATGGTCC-TTAACAATCC-G-TATCGACAG-G-GGCAGG--CGTGTTCTTGTCCAGCGGACAAATCATATCACTCCTTGTGAGGAAATGATATTGTCTCCTTCAGGCTGATTCTGCTAAACA-TCCTAATTGA-CCTC-AATGTTGGA-G-CTCATGTTCCAGTTCCTCCAACATACATTT
gi|21 : CAA-GTTCAT-CTGCCTTTCTCTTAACT--CCAGCGAGACTTGGTGAAGT-CTTCT-TCCTG--ACGAC-TT-TA-CCGACTT-CCA--GTT-T--TGCTTC--ATATAT-A--AGAT-CACCTG-GGTC-ATCTTAAATTGCC-ATTAAGAA-TCACAGTC-ATC--A-TCTTCCATAACTACAGCTAACG-AACTTTGTGT-GGC-ATTTTTAttgcctaaaggtttacatctgacttacatttcattagtttcgcgaaatctgaacctaagataccgtcagtacttatgtctgctacaacgcctcaaaagttgaactcatggatcacccaactcaagtgaaatgttgcacattgcccgtgtacttcaatgtgctccaatcagggttatctattttctctgtgtcacgggcattaagatcacacgttagtttcatcctagagttgtgattctcaaaatgttttactcgacagaaattgcgtccagagttaatcaacccgtatcaaccaacaacgaacaaggtgcgtcgataaaaaataacccagattgaatatcaattcatgtctgagaaatcgaactccattacttgacttcccgcactttggtttacacccgggttgtctcttctttgttcactgtctccttttttgcatgtagtacgtgcatcgctttttgcttgcacgacctctgtgtttttccttttacataagcagtctttggctctgtgtcatcgcttaaccagcagttatgcacttaaaaggga
gi|23 : GTCTTCCTCGA-----CAAATT--CTA-CACATTCTCCGTCCCTTTGGTA--TTTTCTAACAACTCGG-ATC--G-TTT-TCT-GGTG---AC--------GACCTGT-GTCCG--TCTG-GGTGC--TTA-CATCCAA--CCTA-------GTGACA-CGAT--CCC--TAT-AGCAA--GGGCA--G-TGGT---GAGAGA-TC----A---AGGGTGCCTtc
gi|24 : CCAG-GGACAAATCATATCACTCCTTGT-AGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACATTCCTAATTGA-CCTC-AA--TTGGAGG-CTCATGTTCCAGTTCCTCCAACATACATTT
gi|25 : TGGCGAAAT-CTTCTATTCTG--ACGAT-CT-TACCGATCTT-CCA----------GCT----AT-CAT-A--AGATCCACCTG-GATC-ACC-TG----GCC-ATCAG------AC--T---TC-A------CCAC-ACTACAGTTGACGTAACTTTttgccttaaagttttactcttgact
gi|26 : AACG-AACTTTGTGT-GGC-ATTTTT-ATCCC-CAGGTTC-A--ATC--AAAGATTTCACAACCA-G-TGCGTT-A-TCGGTTTTCT--GAAACTTTTCGTATCCCT
gi|28 : n--ATCAAAA-GATTTCACAACCA-G-TGCGTT-A-TCGATTTTCT--GAAACTTTTCGTATCCC
gi|29 : ag-AA-TCTTCCATCACTACAGTTGACA-TGCTTTGTGT-GGC-ATTTCT
gi|3 : atCCAGAG--CAAATAATTTCACTCATGG-GCGGAATCGTTATCGTCTCCTTTAGACTTATGTTA--AAACA-CCCTAGGTGA-CCTTGGA-GCTGTA-G-CTCTTGCT-CAATCCCTCCAACATAtttt
gi|4 : tttctgaaacttctcattagcctccaccatatgatccggtaacacttctatcagatggaatcagtagacgaGTCTTCCTCGC-A---CAA--T--CTAACACATTCTCCGTCCCTTTGGTA--TT--TCTACAACTGCG-ATC--GGTTT-TCT-GGTG---AC--------GACCTGT-GTCCG--TCTGCGGTGC-CTTA-CATCCAA--CCTA-------GTGACA-CGAT-CCAC--TAA-TGCAA--GGGCA--GCTGGT---GAGAG--TC---AA---AGGGTGCCGTTC-GATCC-----GA------ACACTGCCT--CCAAAAGCTCTTGGAT--TCTTTG-TCTGC--AGG-CTGAGTCAGAC-CCCTTGTCG-ACAA-GTTCAT-CTGCCTTTCTCTTAACTGCTCAGCGAGACTTGGTGAAGT-CTTCT-TCCTG--ACGACACTGTA-CGA-CTT-CCA--TTT-TGTTGCTTC--ATATAT-AC-AGAT-CACCTGCGGTC-ATC-TAAATTGCC-ATTAAGAAATCACAGTCAATT-CA-TCTTCCATAACTACAGCCTACG-AACTTTGTGT-GGCCATTTTTAATCCC-CAGGTTC-ACAATCAAAAAGATTTCACCAACATG-TGCGTT-AATCGGTTTTCTT-G--ACTTTTCGTATCCCTGC-ATT-ACTAA-TGGTCC-CTTACAATCC-GGTATCGACAG-GCGGCAGG---GTGTTCTTGTCCAG-GGACAAATCATATCACTCCTTGT-AGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACATTCCTAATTGA-CCTC-AA--TTGGAGG-CTCATGTTCCAGTTCCTCCAACATACATTTaagcttacccaaagagacatcaatgaggcatttatgttgtttaagaaatccaggccaatatttccttcagtgctgatatcggcaacgaccacgtcatgatcgaatgagaaggtgccaattgatatttggagctgacatctacctttacttgcaacggagctccatctgctaatacaatttcttgtgtaactggcatcaattccttcctgcctgtgctttcaattttccgttatacagtatgcgacaaaatcgtcatgtggcacctgtatcaaccaataaactgcacgggatctggttaatagtagcctcagtgaattatctactctggttcgagtgagagtaccgcttgcagtcggaccctttatcatctggtcgttcttcagattgttccactggtgtatttaagacatactctcttcttcttggacctgaaattctttttgctataaacagtacacggctttatgtccccgttttccacaattgtagcatttaaaagggaa
gi|5 : tTCTTCCTCGA-C---CAA--T--CTAACACATTCTCCGTCCCTTTGGTA--TT--CTAACAACTGCG-ATC--G-TTTCTCT-GGTG---AC--------GACCTGT-GTCCG--TCTG-GGTGCCTTTA-CATCCAA--CCTA-------GTGACA-CGAT-TCCC--TAA-TGCAA--GGGCA--GCTGGTC--GAGAGA-TC---AA---AGGGTGCCTTC--GATCCC----GA------ACACTGC-T--CCAAAAGCTCTTG-AT--TCTTTGCTCTGC--AGG-CTG-GTCAGAC-CCCTTGTCGGACAACGTTCATGCTGCCTTTCTCTTAACT--CCAGCGAGACTTGGTGAAGT-CT-CT-TCCTG--AC-AC-CT-TA-CGAACTTTCCA--TTTGT--TGCTTC--ATATAT-ACAAGAT-CACCTGCGGTC-ATC-TAAATTGCC-ATTAG-AA-TCACAGTCA-TC-AAATCTTCCATAACTACAGCTA-CG-AACTTTGTGTTGGC-ATTTTTAATCCCGCAGGTTC-AC-ATCAAAA-GATTTCACAACCATGCTGCGTT-A-TCGGTTTTCTTGA--ACTTTTCGTATCCCTGCCATTGACTAA-TGGTCCCTTAACAATCC-G-TATCGACAGAG-GGCAGG--TGT---CTTGTCCAGAGGACAAATCATATCACTCCTTGT-AGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACATTCCTAATTGACCCTC-AA-TTTGGA-G-CTCATGTT-CAGTTCCTCCAACATACATTTttgcc
gi|6 : GTCTTCCTCGG-A----AA--T--CTA-CACATTCTCCGTCCCTTTGGTA--TT--CTAACAACTGCG-ATC--G-GTT-TCTCGGTG---AC--------GACCTGT-GTCCG--TCTG-GGTGC-TTTA-CATCCAA--CCTA-------GTGACA-CGAT-CCACGTTAG-AGCAA--GGGCA--GCTGGTC--GAGAGACTC---AA---AGGGTGCCGTTC-GATC------GA------ACACTGC-T--CCAAA-GCTCTTG-AT--TCTTTGCTCTGC--AGG-CTGAGTCAGAC-CC-TTGTCGGACAA-GTTCAT-CTGCCTTTCTCTTAACTGCCCAGCGAGACTTGGTGAAGT-CCTCT-TCCTG--ACGACGCT-TA-CGAACTT-CCA--TTT-T--TGCTTC--ATATAT-A--AGAT-CACCTG-GGTC-ATC-TAAAATGCC-ATTAGAAA-TCACAGTCAATC-AA-TCTTCCATAACTACAGCTAGCG-AACTTTGTGT-GGC-ATTTTTAATCCCGCAGGTTC-A--ATCAAAAAGATTTCACCAACATG-TGCGTT-A-TCGGTTTTCT--G--ACTTTTCGTATCCCTGCCATT-ACTAAATGGTCC-TTAACAATCC-G-TATCGACAG-G-GGCAGG--CGTGTTCTTGTCCAGCGGACAAATCATATCACTCCTTGTGAGGAAATGATATTGTCTCCTTCAGGCTGATTCTGCTAAACA-TCCTAATTGA-CCTC-AATGTTGGA-G-CTCATGTTCCAGTTCCTCCAACATACATTTttc
gi|7 : CCAGAGGACAAATCATATCACTCCTTG-GAGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACA-TCCTAATTGA-CCTC-AA-GTTGGA-GCCTCATGTT-CAGTTCCTCCAACAT-CATTT
gi|8 : TCTCCCTC-A-A---CAC--TTTCTA-TACATTCTCCGTCCCTATGATA--TTTTCTTACAACTCTG-ATC--G-TTT-TCT-GGTG---GC--------GACCTGT-GTCCG--TCTG-GGTGC-TT-A-CATCCAA--CCTA-------GAGACT-CGAT--CTC--TAC-AGCAA--AGGCA--A-TGAT---GAGAGAC-C---AAGCTAGGGCGCCTCCT-GATCCC----GA------ACACTG--TGACCATA-TCTTTCG-AT--TCATTG-TCTGC--AGG-TTG-GTCAGGCACCCTTTT--GACAA-GCTCAT-CTGCCTTTCTTTTAACT--CCAGTGAGACTTGGTGAAAT-CTTCT-TTCTG--ACGAC-TC-TA-CCGACTT-CCA--GTT-C--TGCTTCATATATAT-A--AGAT-CACCTG-GATC-ATC-----TTGCC-ATTTAGAA-TCACAGTC-ATC--A-TCTTCCATTACCACAGCTAACG-AGCTTTGTGG-GAC-ATTTGT-ATCCC-CAGGTTC-A--ATC--AAAGATCTCACATCCA-G-TGCGTT-A-CTGGTTTTCT--GAAACTGTTCGTATCCCT-CCATT-ACT-AATGGTCC-CTTACAATTC-G-TATCGACAG-G-GGCAGGTACATGTATCTGTCCAGG--------------ACTCCTTG-GAGGAAATGACATTGTCTCCTTCATGCCGACTCTG-T-AACA-TCCTAAGTGACCCTC-AA-GCTGGA-A-CTCATGTT-CAGTCCCTCCAACATACATTTttcctaaagttttactctacttacaatttattgtttcagcgaaatctgaaacctaagataccgtcagtactttgtctgctacaacgcctcaaagttgaactctgattccccaactcaagtgaaatgtgcacttgccctgtactcatggtgctccaatcagggttactattttctctgtgtcacgggcattaaatcaccagtttcatccaagttgtgattctccaaatgtttgactcgacagaatcgtcccagagttaatcaacccgtatcaaccaacaacgaacaaggtgcgtcgtaaaaataacccagattgaatatcaattcatcgtctgagaaatcgaactcatacttgagacttcctgcaactttggtttaccccgttgtctcttttttgttcactgtctcctttttgcatgtagtagtgcatcgctttttgttgcaccgactcctcgtgtttttctttttacataagcagttctttggctctgtgtcatcgcttaaccgcagttatggccacttaaaaggga
gi|9 : TTTCTTGA--ACTTTTCGTATCCCTGCCATTGACTAA-TGGTCCCTTAACAATCC-G-TATCGACAGAG-GGCAGG--TGT---CTTGTCCAGAGGACAAATCATATCACTCCTTGT-AGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACATTCCTAATTGACCCTC-AA-TTTGGA-G-CTCATGTT-CAGTTCCTCCAACATACATTTt
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): AGCTGACCTTGGGAGTTTAGGCTCGTGTTCAATTCCTCACATGAATAAGCTTACCAAAAGAAGACATCACGAGGCATTTATAGTGTTTGAGATAAACTCCAGGCCCCAATATTCTTGTCAGTGAACTGAGTATCCGCATATGGCCACGTCTAATCGAAATGAGAAGGTTGCCAAGTGATATATGAAGCTGAGCATTACACCTTTAACTTGCAATGGATCATCCATCTGCTTAACGACAACGTATCTTGTGTCGCTTCCTGTGCTTTCAATTTTGTTTCCGAATATAATCGTATGCGACAAGAAATCGTCATAAAGTGGGGTGCACCATGATCAACGCAATACTGCAAGGGATCTGATTAAAACAGTGCCCTTAGTGAATTAATTCAGATTGAATAATCTATTACTGGCTTTGAGTGATTGTACCACTTGCAGTCCCTTGGACCCTTTATCACCAATTACCGGCCCTGGTATAAATCCGATAAGTCTTCTCAGATGTTCACTGGTTATACTTGAGCATACTATCCTTCCTTCTTGGATTGAATTCTTTTTGCTAATAACAGTACTACGGCTATGTCCATGTTTATATCACATTGTAGCATTCTAAAGGAAACTATACCAGCCACTCGGTGATGAAGACGCAAGATCCGCATGAGTTCACATGTGAGCTGCTTTGTGTTTCTTTTGGACAAAGTCAAATTGGCAATTCCTGTCCTCCATCACCTTATCAAAGAAGATTTTAATCATCACGAAGCTAGTATATGATTTCATGTTTACATCGAGCCACATTAGAATCAATCAATTCTTAAGACTCATTGTATGACGACTTGTTGGCTTCCTGGCAA
Unaligned ( gi|13 ): TTTTCCTGAAGATACATCTATCAAATATTTATTATGTTTCAAGAAATCTAAATCTAAGATGCCATCATTACTTATGTCTGCTACAACGGCCTCAAAAGTGAACTCATGATTTCCCAACTCAAAGTGAAATGTGCACTTGCCCTGTAATTGCAATGGTGCTCCATCAGCTAGTACTATTTTCTGGACCACGGGCATTAAAACAACAGTTTCACTCCTATTGAGTGTATTCTCAAAAAGCTTACTTGACAGAATCGTCAGAGTAGCACCCGTATCAACCAACAACGAACAAGGTGCTTTATTTACAATAGCC
Unaligned ( gi|14 ): ACATTTATTAGTTTTCAGCGAAATCGGAAACCTAAGATACCGTCAGTAGCTTATTCTGCTACAACGCCTCAAGAAGTTGAACTCTGATCCCCAACTCAAAGTGAAATGTTGCACATTGCGCCCTGTACTACAATCGTGCTCCATCAGGGTTACTATTTTCTGTGTCACGGGCATTAAATCACCTTAGTTTCATCCAAGTGTATTCTCAAAATGTTTACTCACAGAATTCGTCCAGAGTTATCAACCCGTATCAACCAACAACGAACAAGGTGCGTCGGTAAAAATAACC
Unaligned ( gi|16 ): GATTGAATTATCAATTCATGTCTGAGAAATCGAACTCCATTTACTTGAACTTCCGCAACTTTGGTTTACCCCGGTTGTCTCTTTTGTTGTTCACTGTCTCCTTTTTGCATGTAGTAGCTGCATCGCTTTTTGCTTGCACCGACTCCTGTGTTTTTCCTTTTACATAAGCAGTTCTGTTGGCTCTGTGTCATCGCTTACCAGCAGTTACTGGCACTTAAAAGGGA
Unaligned ( gi|18 ): AATTGAATATCAATTCATGTCTGAGAACATCGCAACTCCATACTTGAGCTTCCTGCACTTTGGTTTACACCCGGTTGTCTCTTTTGTTGTTCAACTGTCTCCTTTTTTGCATGTAGTAGTGCATCGCTTTTTGTTGCAGCGACTCCTGTGTTTTTCTTTTACATAAGGCAGGTCTTTGGCTCTGTGTCATCGCTTAACCCAGTTATGGCCACTTAAAAGGGA
Unaligned ( gi|19 ): GATTGAATATCAATTCATGTCTGAGAAATCGAACTCATACTTGACTTCCTGCACTTTGGTTTACACCCGGTTGTCTCTTTTTGTTCAACTGTCTCCTTTTTGCATGTAGTAGGTGCATCGCTTTTTGTTGCACCGACCTCTGTTTTTCTTTTTACATAACAGTCTTTGGCTCTGTGTCATCGCTTACCACAGTTATGGCACTTAAAAGGGAA
Unaligned ( gi|20 ): CCATGAACCAGAATACGGTGATGAAGACGCCGACCATGTTCACTGTGCTGCTTTGTGATTTCTTTGGACAGAGTCAAATGGGCAATTTTGTCTTCCATAGCCTTCAAAGAAGTTTTAATTCATCACGAAGCTGTTTGATTTCTGGTTCACATGCACACTAGAATCCAAATCTTTAGACTCATTGTTGACACTGTTGGCTCCTCTGGCAAA
Unaligned ( gi|22 ): ACTGAATATCAATTCGTGTTTCAGAGTAATCGAACCCATATTTGACTTCATGCTCTTTGGTTTACACTCGGTTGTCTCTTTATGTTCTACTGCTTCCTTTTTGCACGTAGTAGGTGCATCGCTTTTTGTTGCACCGACCTGTTTTTCTTTTTACATGACAGTCTTTAATGGCTCTGT
Unaligned ( gi|27 ): ACATTTATTATGTTTCAAGAAATTTAAACCTAAGATGCTGTCACTGTTTATGTCTGCTACAATGGCCTCAAAAGTGAA
Alignments
lowQualScore : 2222222222 1 11 11 22222222 11 1111111 2222222 1 222 11111111111 222222 111111 11111 1 1 1 1 11 1 1 111 11 1 111111 11 1111 1 11 1 22222 1 1 1 1 11111111 22 2 1 11 2
lowQualScore : 0 5555555555 77 1 33 33 1 1 5 66 5 5 5 888 33333333 5 66 5 66 3 5 66 6666666 55 0000000 66 66 66 5 111 77777777777 99 666666 666666 55555 0 1 5 77 1 77 5 1 6 6 5 1 55 5 5 66 0 5 0 0 5 333 9999 66 5 11 5 0 5 333333 5 6 5 55 2222 4 1 4 4 4 5 5 6 33 5 5 9 5 5 5 88888 8 2 1 5 5 1 5 22222222 7 00 8 0 2 4 33 8 8 0
lowQualScore : . .......... .. . .. .. . . . .. . . . ... ........ . .. . .. . . .. ....... .. ....... .. .. .. . ... ........... .. ...... ...... ..... . . . .. . .. . . . . . . .. . . .. . . . . . ... .... .. . .. . . . ...... . . . .. .... . . . . . . . . .. . . . . . . ..... . . . . . . . ........ . .. . . . . .. . . .
lowQualScore : 7 4444444444 99 4 88 88 0 0 0 99 0 0 0 888 11111111 0 99 0 22 2 0 99 2222222 88 2222222 44 99 99 0 444 66666666666 77 666666 444444 66666 7 4 7 99 4 99 7 4 7 7 7 4 77 0 0 99 0 0 0 4 0 000 6666 99 0 99 0 0 0 666666 0 5 0 88 6666 9 5 0 4 4 0 0 7 66 0 0 0 7 7 7 66666 6 0 4 7 7 4 7 99999999 1 66 0 4 0 0 00 0 0 0
consensus : GTCTTCCTCGA-A---CAA--T--CTA-CACATTCTCCGTCCCTTTGGTA--TT--CTNACAACTNCG-ATC--G-TTT-TCT-GGTG---AC--------GACCTGT-GTCCG--TCTG-GGTGC-TTTA-CATCCAA--CCTA-------GTGACA-CGAT-CCCC--TAC-AGCAA--GGGCA--GCTGGT---GAGAGACTC---AA---AGGGCGCCTCCC-GATCCC----GA------ACACTGC-T--CCAAA-GCTCTTG-AT--TCTTTG-TCTGC--AGG-CTG-GTCAGAC-CCCTTGTCGGACAA-GTTCAT-CTGCCTTTCTCTTAACT--CCAGCGAGACTTGGTGAAGT-CTTCT-TCCTG--ACGAC-CT-TA-CGAACTT-CCA--TTT-T--TGCTTC--ATATAT-A--AGAT-CACCTG-GGTC-ATC-TAAATTGCC-ATTAGGAA-TCACAGTCAATC-AA-TCTTCCATAACTACAGCTAACG-AACTTTGTGT-GGC-ATTTTTAATCCCGCAGGTTC-A--ATCAAAAAGATTTCACAACCATG-TGCGTT-A-TCGGTTTTCT--G--ACTTTTCGTATCCCTGCCATTGACTAAATGGTCC-TTAACAATCC-G-TATCGACAG-G-GGCAGG--CGTGTTCTTGTCCAGAGGACAAATCATATCACTCCTTGTGAGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACATTCCTAATTGA-CCTC-AA-GTTGGA-G-CTCATGTTCCAGTTCCTCCAACATACATTT
Reference ( family-4137 ) : GTCTTCCTCGA-A---CAA--T--CTA-CACATTCTCCGTCCCTTTGGTA--TT--CTNACAACTNCG-ATC--G-TTT-TCT-GGTG---AC--------GACCTGT-GTCCG--TCTG-GGTGC-TTTA-CATCCAA--CCTA-------GTGACA-CGAT-CCCC--TAC-AGCAA--GGGCA--GCTGGT---GAGAGACTC---AA---AGGGCGCCTCCC-GATCCC----GA------ACACTGC-T--CCAAA-GCTCTTG-AT--TCTTTG-TCTGC--AGG-CTG-GTCAGAC-CCCTTGTCGGACAA-GTTCAT-CTGCCTTTCTCTTAACT--CCAGCGAGACTTGGTGAAGT-CTTCT-TCCTG--ACGAC-CT-TA-CGAACTT-CCA--TTT-T--TGCTTC--ATATAT-A--AGAT-CACCTG-GGTC-ATC-TAAATTGCC-ATTAGGAA-TCACAGTCAATC-AA-TCTTCCATAACTACAGCTAACG-AACTTTGTGT-GGC-ATTTTTAATCCCGCAGGTTC-A--ATCAAAAAGATTTCACAACCATG-TGCGTT-A-TCGGTTTTCT--G--ACTTTTCGTATCCCTGCCATTGACTAAATGGTCC-TTAACAATCC-G-TATCGACAG-G-GGCAGG--CGTGTTCTTGTCCAGAGGACAAATCATATCACTCCTTGTGAGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACATTCCTAATTGA-CCTC-AA-GTTGGA-G-CTCATGTTCCAGTTCCTCCAACATACATTT
gi|10 : CT-GATC------GA------ACACTGT-C--CAAAA-GCTCTTG-AT--TCTTTG-TCTGC--AGG-CTG-GTCAGA--CCCTTGTCGGACAA-GTTCATGCTGCCTTTCTCTTAACT--CCAGCGAGACTTGGTGAAGTCCTTCT-TCCTGACACGAC-TT-TACCGAACTT-CCAGTTTT-T--TGCTTC--ATATATAA--AGAT-CACCTG-GGTCAATC-TAAA-TGCCAATTAGAAA-TCACAGTCATTCAAA-TCTTCCATAACTACAGCT-ACG--ACTTTGTGT-GGC-ATTTTTAATCCCGCAGGTTCAA--ATCAAAAAGATTTCACAACCA-G-TGCGTTAA-TCGGTTTTCT--G--ACTTTTCGTATCCCTG-CATTGACTAAATGGTCC-TTAACAATCCGG-TATCGACA--G-GGCAGG--TG---TCTTGTCCAGAGGACAAATCATATCACTCCTTG-GAGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACA-TCCTAATTGA-CCTC-AA-GTTGGA-GCCTCATGTT-CAGTTCCTCCAACAT-CATTT
gi|11 : GTCTTCCTCCACA---CTT--T--CTA-CACATTCTCCGCCCCTCTGATACTTT--CTTACAACTCTG-ATC--G-TAT-TCT-GGTG---GC--------GACCTGT-GTCTG--TCTG-GGTGC-TT-A-CATCCAA--TCTA-------GTGACT-CGAT-CTC---TAC-AGCAA--GGGCA--G-TGAT---GTGAGACC-----A---AGGGCGCCTCCT-GATCCG----GA------ACACTGT-T--C-AAA-GCTCTTA-AT--TCTTTG-TTTGC--AGG-CTG-GTCAGAC-ACCTTGTCG-ACAA-GCTCAT-CTGCCTTTCTCT-AACT--CCAAGGAGACTTGGCGAAGT-CTTCT-TTCTG--ACGAC-TC-TA-CCTACTT-CCA--GTT-C--TGCTTC--ATGTAT-A--ATAT-CACCTG-GATC-ATC-----TTGCC-ATTCAGAA-TCACAGTCA--C-CA-TCTTCCATTATTACAGCTAACG-AGCTTTGTGG-GAT-ATTTTttc
gi|12 : CAGTTCCTCCAACATACATTT
gi|15 : GTCTTCTTCGA-ATTTC----T--CCA-CGCACCCTCCCTCCCATTGGTATTTT--CTGATGA-TGCGTACC--G-TTT-TCT-GATG---ACT-------GACGCGT-GT-TG--TCTG-GGTAC---TAGCATCTAA--CATA-------AGCACT-TGAT--GTT--TGC-AACAC--GGGCAATGCTGttcctaaagttacatctacttaacatttattgtttcacgaaatctgaaacctaagataccgtcagtactttgtctgctacaacgcctcaaagttgaactctgattccccaactcaagtgaaatgtgcacttgccctgtacttacaatggtgctccatcagggttactattttctgtgtcacgggcattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacccgtatcaaccaacaacgaacaaggtgcgtcgttaaaaataacc
gi|17 : --TT--TTTAAAACTCTG-ATTTTG-TTT-TCT-GGTGGACACCTTGCGGGGACATGTTGTTCGCGTCTG-GGTAC--TTG-CATTTAAGCCCTATTTATGTGTGAGAGAGATGTCTC--TACTAGCGAATGTGCA--G-TGATGCAGGGAGACTCTTTAA---TTGTCCTGTCCCTGATTTCTCGTGAATAGTTACACTG--T--CCAGA-TCTCTTT-GTAATTTTTG-TCTGCGGAGGAATG-GTCAGcaatgacacctgtttctcgtcattggatatccgaaatctctgttcgcttgaaactgtgttcactgcttccacttcttctgctcacttgactgctctacggtctgaattcctgcatgcaggtccgtttatctttct
gi|2 : TTTCT--G--ACTTTTCGTATCCCTGCCATT-ACTAAATGGTCC-TTAACAATCC-G-TATCGACAG-G-GGCAGG--CGTGTTCTTGTCCAGCGGACAAATCATATCACTCCTTGTGAGGAAATGATATTGTCTCCTTCAGGCTGATTCTGCTAAACA-TCCTAATTGA-CCTC-AATGTTGGA-G-CTCATGTTCCAGTTCCTCCAACATACATTT
gi|21 : CAA-GTTCAT-CTGCCTTTCTCTTAACT--CCAGCGAGACTTGGTGAAGT-CTTCT-TCCTG--ACGAC-TT-TA-CCGACTT-CCA--GTT-T--TGCTTC--ATATAT-A--AGAT-CACCTG-GGTC-ATCTTAAATTGCC-ATTAAGAA-TCACAGTC-ATC--A-TCTTCCATAACTACAGCTAACG-AACTTTGTGT-GGC-ATTTTTAttgcctaaaggtttacatctgacttacatttcattagtttcgcgaaatctgaacctaagataccgtcagtacttatgtctgctacaacgcctcaaaagttgaactcatggatcacccaactcaagtgaaatgttgcacattgcccgtgtacttcaatgtgctccaatcagggttatctattttctctgtgtcacgggcattaagatcacacgttagtttcatcctagagttgtgattctcaaaatgttttactcgacagaaattgcgtccagagttaatcaacccgtatcaaccaacaacgaacaaggtgcgtcgataaaaaataacccagattgaatatcaattcatgtctgagaaatcgaactccattacttgacttcccgcactttggtttacacccgggttgtctcttctttgttcactgtctccttttttgcatgtagtacgtgcatcgctttttgcttgcacgacctctgtgtttttccttttacataagcagtctttggctctgtgtcatcgcttaaccagcagttatgcacttaaaaggga
gi|23 : GTCTTCCTCGA-----CAAATT--CTA-CACATTCTCCGTCCCTTTGGTA--TTTTCTAACAACTCGG-ATC--G-TTT-TCT-GGTG---AC--------GACCTGT-GTCCG--TCTG-GGTGC--TTA-CATCCAA--CCTA-------GTGACA-CGAT--CCC--TAT-AGCAA--GGGCA--G-TGGT---GAGAGA-TC----A---AGGGTGCCTtc
gi|24 : CCAG-GGACAAATCATATCACTCCTTGT-AGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACATTCCTAATTGA-CCTC-AA--TTGGAGG-CTCATGTTCCAGTTCCTCCAACATACATTT
gi|25 : TGGCGAAAT-CTTCTATTCTG--ACGAT-CT-TACCGATCTT-CCA----------GCT----AT-CAT-A--AGATCCACCTG-GATC-ACC-TG----GCC-ATCAG------AC--T---TC-A------CCAC-ACTACAGTTGACGTAACTTTttgccttaaagttttactcttgact
gi|26 : AACG-AACTTTGTGT-GGC-ATTTTT-ATCCC-CAGGTTC-A--ATC--AAAGATTTCACAACCA-G-TGCGTT-A-TCGGTTTTCT--GAAACTTTTCGTATCCCT
gi|28 : n--ATCAAAA-GATTTCACAACCA-G-TGCGTT-A-TCGATTTTCT--GAAACTTTTCGTATCCC
gi|29 : ag-AA-TCTTCCATCACTACAGTTGACA-TGCTTTGTGT-GGC-ATTTCT
gi|3 : atCCAGAG--CAAATAATTTCACTCATGG-GCGGAATCGTTATCGTCTCCTTTAGACTTATGTTA--AAACA-CCCTAGGTGA-CCTTGGA-GCTGTA-G-CTCTTGCT-CAATCCCTCCAACATAtttt
gi|4 : tttctgaaacttctcattagcctccaccatatgatccggtaacacttctatcagatggaatcagtagacgaGTCTTCCTCGC-A---CAA--T--CTAACACATTCTCCGTCCCTTTGGTA--TT--TCTACAACTGCG-ATC--GGTTT-TCT-GGTG---AC--------GACCTGT-GTCCG--TCTGCGGTGC-CTTA-CATCCAA--CCTA-------GTGACA-CGAT-CCAC--TAA-TGCAA--GGGCA--GCTGGT---GAGAG--TC---AA---AGGGTGCCGTTC-GATCC-----GA------ACACTGCCT--CCAAAAGCTCTTGGAT--TCTTTG-TCTGC--AGG-CTGAGTCAGAC-CCCTTGTCG-ACAA-GTTCAT-CTGCCTTTCTCTTAACTGCTCAGCGAGACTTGGTGAAGT-CTTCT-TCCTG--ACGACACTGTA-CGA-CTT-CCA--TTT-TGTTGCTTC--ATATAT-AC-AGAT-CACCTGCGGTC-ATC-TAAATTGCC-ATTAAGAAATCACAGTCAATT-CA-TCTTCCATAACTACAGCCTACG-AACTTTGTGT-GGCCATTTTTAATCCC-CAGGTTC-ACAATCAAAAAGATTTCACCAACATG-TGCGTT-AATCGGTTTTCTT-G--ACTTTTCGTATCCCTGC-ATT-ACTAA-TGGTCC-CTTACAATCC-GGTATCGACAG-GCGGCAGG---GTGTTCTTGTCCAG-GGACAAATCATATCACTCCTTGT-AGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACATTCCTAATTGA-CCTC-AA--TTGGAGG-CTCATGTTCCAGTTCCTCCAACATACATTTaagcttacccaaagagacatcaatgaggcatttatgttgtttaagaaatccaggccaatatttccttcagtgctgatatcggcaacgaccacgtcatgatcgaatgagaaggtgccaattgatatttggagctgacatctacctttacttgcaacggagctccatctgctaatacaatttcttgtgtaactggcatcaattccttcctgcctgtgctttcaattttccgttatacagtatgcgacaaaatcgtcatgtggcacctgtatcaaccaataaactgcacgggatctggttaatagtagcctcagtgaattatctactctggttcgagtgagagtaccgcttgcagtcggaccctttatcatctggtcgttcttcagattgttccactggtgtatttaagacatactctcttcttcttggacctgaaattctttttgctataaacagtacacggctttatgtccccgttttccacaattgtagcatttaaaagggaa
gi|5 : tTCTTCCTCGA-C---CAA--T--CTAACACATTCTCCGTCCCTTTGGTA--TT--CTAACAACTGCG-ATC--G-TTTCTCT-GGTG---AC--------GACCTGT-GTCCG--TCTG-GGTGCCTTTA-CATCCAA--CCTA-------GTGACA-CGAT-TCCC--TAA-TGCAA--GGGCA--GCTGGTC--GAGAGA-TC---AA---AGGGTGCCTTC--GATCCC----GA------ACACTGC-T--CCAAAAGCTCTTG-AT--TCTTTGCTCTGC--AGG-CTG-GTCAGAC-CCCTTGTCGGACAACGTTCATGCTGCCTTTCTCTTAACT--CCAGCGAGACTTGGTGAAGT-CT-CT-TCCTG--AC-AC-CT-TA-CGAACTTTCCA--TTTGT--TGCTTC--ATATAT-ACAAGAT-CACCTGCGGTC-ATC-TAAATTGCC-ATTAG-AA-TCACAGTCA-TC-AAATCTTCCATAACTACAGCTA-CG-AACTTTGTGTTGGC-ATTTTTAATCCCGCAGGTTC-AC-ATCAAAA-GATTTCACAACCATGCTGCGTT-A-TCGGTTTTCTTGA--ACTTTTCGTATCCCTGCCATTGACTAA-TGGTCCCTTAACAATCC-G-TATCGACAGAG-GGCAGG--TGT---CTTGTCCAGAGGACAAATCATATCACTCCTTGT-AGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACATTCCTAATTGACCCTC-AA-TTTGGA-G-CTCATGTT-CAGTTCCTCCAACATACATTTttgcc
gi|6 : GTCTTCCTCGG-A----AA--T--CTA-CACATTCTCCGTCCCTTTGGTA--TT--CTAACAACTGCG-ATC--G-GTT-TCTCGGTG---AC--------GACCTGT-GTCCG--TCTG-GGTGC-TTTA-CATCCAA--CCTA-------GTGACA-CGAT-CCACGTTAG-AGCAA--GGGCA--GCTGGTC--GAGAGACTC---AA---AGGGTGCCGTTC-GATC------GA------ACACTGC-T--CCAAA-GCTCTTG-AT--TCTTTGCTCTGC--AGG-CTGAGTCAGAC-CC-TTGTCGGACAA-GTTCAT-CTGCCTTTCTCTTAACTGCCCAGCGAGACTTGGTGAAGT-CCTCT-TCCTG--ACGACGCT-TA-CGAACTT-CCA--TTT-T--TGCTTC--ATATAT-A--AGAT-CACCTG-GGTC-ATC-TAAAATGCC-ATTAGAAA-TCACAGTCAATC-AA-TCTTCCATAACTACAGCTAGCG-AACTTTGTGT-GGC-ATTTTTAATCCCGCAGGTTC-A--ATCAAAAAGATTTCACCAACATG-TGCGTT-A-TCGGTTTTCT--G--ACTTTTCGTATCCCTGCCATT-ACTAAATGGTCC-TTAACAATCC-G-TATCGACAG-G-GGCAGG--CGTGTTCTTGTCCAGCGGACAAATCATATCACTCCTTGTGAGGAAATGATATTGTCTCCTTCAGGCTGATTCTGCTAAACA-TCCTAATTGA-CCTC-AATGTTGGA-G-CTCATGTTCCAGTTCCTCCAACATACATTTttc
gi|7 : CCAGAGGACAAATCATATCACTCCTTG-GAGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACA-TCCTAATTGA-CCTC-AA-GTTGGA-GCCTCATGTT-CAGTTCCTCCAACAT-CATTT
gi|8 : TCTCCCTC-A-A---CAC--TTTCTA-TACATTCTCCGTCCCTATGATA--TTTTCTTACAACTCTG-ATC--G-TTT-TCT-GGTG---GC--------GACCTGT-GTCCG--TCTG-GGTGC-TT-A-CATCCAA--CCTA-------GAGACT-CGAT--CTC--TAC-AGCAA--AGGCA--A-TGAT---GAGAGAC-C---AAGCTAGGGCGCCTCCT-GATCCC----GA------ACACTG--TGACCATA-TCTTTCG-AT--TCATTG-TCTGC--AGG-TTG-GTCAGGCACCCTTTT--GACAA-GCTCAT-CTGCCTTTCTTTTAACT--CCAGTGAGACTTGGTGAAAT-CTTCT-TTCTG--ACGAC-TC-TA-CCGACTT-CCA--GTT-C--TGCTTCATATATAT-A--AGAT-CACCTG-GATC-ATC-----TTGCC-ATTTAGAA-TCACAGTC-ATC--A-TCTTCCATTACCACAGCTAACG-AGCTTTGTGG-GAC-ATTTGT-ATCCC-CAGGTTC-A--ATC--AAAGATCTCACATCCA-G-TGCGTT-A-CTGGTTTTCT--GAAACTGTTCGTATCCCT-CCATT-ACT-AATGGTCC-CTTACAATTC-G-TATCGACAG-G-GGCAGGTACATGTATCTGTCCAGG--------------ACTCCTTG-GAGGAAATGACATTGTCTCCTTCATGCCGACTCTG-T-AACA-TCCTAAGTGACCCTC-AA-GCTGGA-A-CTCATGTT-CAGTCCCTCCAACATACATTTttcctaaagttttactctacttacaatttattgtttcagcgaaatctgaaacctaagataccgtcagtactttgtctgctacaacgcctcaaagttgaactctgattccccaactcaagtgaaatgtgcacttgccctgtactcatggtgctccaatcagggttactattttctctgtgtcacgggcattaaatcaccagtttcatccaagttgtgattctccaaatgtttgactcgacagaatcgtcccagagttaatcaacccgtatcaaccaacaacgaacaaggtgcgtcgtaaaaataacccagattgaatatcaattcatcgtctgagaaatcgaactcatacttgagacttcctgcaactttggtttaccccgttgtctcttttttgttcactgtctcctttttgcatgtagtagtgcatcgctttttgttgcaccgactcctcgtgtttttctttttacataagcagttctttggctctgtgtcatcgcttaaccgcagttatggccacttaaaaggga
gi|9 : TTTCTTGA--ACTTTTCGTATCCCTGCCATTGACTAA-TGGTCCCTTAACAATCC-G-TATCGACAGAG-GGCAGG--TGT---CTTGTCCAGAGGACAAATCATATCACTCCTTGT-AGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACATTCCTAATTGACCCTC-AA-TTTGGA-G-CTCATGTT-CAGTTCCTCCAACATACATTTt
blockSeqs : ATTTC TT A TT TT G G T TT G C C GAC CTTGCGGG T CG C CT T G GC TTTATGT AG CCACGT CT AT AT C GCA CTCTTTAA CT TCTCGT ATAGTT CCT A G AA C GG A A A G C G GC . A . A G C T G TGT AT . CA C C . TTAAAT . G A AA AAA T A T T C A G . CA A A T C . A GAA G A C . G A C TACATGTA C TG C T C G TG G C C
blockSeqs : CAAAT . A . TT T C . . . . . . T . . . C T . . . T GTCTC C . . C C CCAAGCT T CG . TGA A . . C . . A . G . . GC . . . G . . . G GT . . C . C . TAAAT . G . AA CA A A . . . A G . C A A T . . . GAA G A C . . A . CGTGTT A TG C T C . TG G . C
blockSeqs : ACAA . . . . A C . . . . . . . . . . T T . . . A CCAC T . . C C CTCAA C CC . TT . . . . . . . . G . . . . . . . . . . T C . . . . . . TAAAT . G . A AA C G . . . A . . . A A T . . . TGA . A . . . . . CGTGTT A T . T C . G . . C
blockSeqs : CCAA . . . . T G . . . . . . . . . . T T . . . A TCCC A . . C . TCAA C CC . CT . . . . . . . . . . . . . . . . . . . T T . . . . . . TAAAA . A . A CA A A . . . A . . . A A . . . . GAA . . . . . . . GTGTT C G . T . . T . . C
blockSeqs : ACAC . . . . A G . . . . . . . . . . . T . . . A GTT A . . . . TCAA T C . CT . . . . . . . . . . . . . . . . . . . T T . . . . . . TG . G . A AA A G . . . . . . . . . . . . . TGA . . . . . . . TGT A T . . . . G . . .
blockSeqs : AAA . . . . A G . . . . . . . . . . . T . . . A CCC G . . . . TCA . . . T . . . . . . . . . . . . . . . . . G C . . . . . . T . . . A A A T . . . . . . . . . . . TG . . . . . . . TGT G T . . . . G . . .
blockSeqs : . . T C . . . . . . . . . . . . . . . T CTC C . . . . . . . . . . . . . . . . . . T . . . . A T A . . . G A G . . . . T . . .
blockSeqs : A . A . . . G . G . . . . . . . .
blockSeqs : A . . T . . . . . . . .
blockSeqCons : ACAA****** ** CTCAA****** CC**** ** N** TAAAT* A* A*** GAA** CGTGTT**
originalCons : GTCTTCCTCGA-A---CAA--T--CTA-CACATTCTCCGTCCCTTTGGTA--TT--CTNACAACTNCG-ATC--G-TTT-TCT-GGTG---AC--------GACCTGT-GTCCG--TCTG-GGTGC-TTTA-CATCCAA--CCTA-------GTGACA-CGAT-CCCC--TAC-AGCAA--GGGCA--GCTGGT---GAGAGACTC---AA---AGGGCGCCTCCC-GATCCC----GA------ACACTGC-T--CCAAA-GCTCTTG-AT--TCTTTG-TCTGC--AGG-CTG-GTCAGAC-CCCTTGTCGGACAA-GTTCAT-CTGCCTTTCTCTTAACT--CCAGCGAGACTTGGTGAAGT-CTTCT-TCCTG--ACGAC-CT-TA-CGAACTT-CCA--TTT-T--TGCTTC--ATATAT-A--AGAT-CACCTG-GGTC-ATC-TAAATTGCC-ATTAGGAA-TCACAGTCAATC-AA-TCTTCCATAACTACAGCTAACG-AACTTTGTGT-GGC-ATTTTTAATCCCGCAGGTTC-A--ATCAAAAAGATTTCACAACCATG-TGCGTT-A-TCGGTTTTCT--G--ACTTTTCGTATCCCTGCCATTGACTAAATGGTCC-TTAACAATCC-G-TATCGACAG-G-GGCAGG--CGTGTTCTTGTCCAGAGGACAAATCATATCACTCCTTGTGAGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACATTCCTAATTGA-CCTC-AA-GTTGGA-G-CTCATGTTCCAGTTCCTCCAACATACATTT
finalCons : GTCTTCCTCGAACAA------T--CTA-CACATTCTCCGTCCCTTTGGTA--TT--CTNACAACTNCG-ATC--G-TTT-TCT-GGTG---AC--------GACCTGT-GTCCG--TCTG-GGTGC-TTTA-CATCCAA--CCTA-------GTGACA-CGAT-CCCC--TAC-AGCAA--GGGCA--GCTGGT---GAGAGACTCAA------AGGGCGCCTCCC-GATCCC----GA------ACACTGC-T--CCAAA-GCTCTTG-AT--TCTTTG-TCTGC--AGG-CTG-GTCAGAC-CCCTTGTCGGACAA-GTTCAT-CTGCCTTTCTCTTAACT--CCAGCGAGACTTGGTGAAGT-CTTCT-TCCTG--ACGAC-CT-TA-CGAACTT-CCAN--TT-T--TGCTTC--ATATAT-A--AGAT-CACCTG-GGTC-ATCTAAAT-TGCC-ATTAGGAA-TCACAGTCA-TCA---TCTTCCATAACTACAGCTAACG-AACTTTGTGT-GGC-ATTTTTAATCCCGCAGGTTC-A--ATCAAAAAGATTTCACAACCATG-TGCGTT-A-TCGGTTTTCTGAA--ACTTTTCGTATCCCTGCCATTGACTAAATGGTCC-TTAACAATCC-G-TATCGACAG-G-GGCAGGCGTGTT--CTTGTCCAGAGGACAAATCATATCACTCCTTGTGAGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACATTCCTAATTGA-CCTC-AA-GTTGGA-G-CTCATGTTCCAGTTCCTCCAACATACATTT
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): AGCTGACCTTGGGAGTTTAGGCTCGTGTTCAATTCCTCACATGAATAAGCTTACCAAAAGAAGACATCACGAGGCATTTATAGTGTTTGAGATAAACTCCAGGCCCCAATATTCTTGTCAGTGAACTGAGTATCCGCATATGGCCACGTCTAATCGAAATGAGAAGGTTGCCAAGTGATATATGAAGCTGAGCATTACACCTTTAACTTGCAATGGATCATCCATCTGCTTAACGACAACGTATCTTGTGTCGCTTCCTGTGCTTTCAATTTTGTTTCCGAATATAATCGTATGCGACAAGAAATCGTCATAAAGTGGGGTGCACCATGATCAACGCAATACTGCAAGGGATCTGATTAAAACAGTGCCCTTAGTGAATTAATTCAGATTGAATAATCTATTACTGGCTTTGAGTGATTGTACCACTTGCAGTCCCTTGGACCCTTTATCACCAATTACCGGCCCTGGTATAAATCCGATAAGTCTTCTCAGATGTTCACTGGTTATACTTGAGCATACTATCCTTCCTTCTTGGATTGAATTCTTTTTGCTAATAACAGTACTACGGCTATGTCCATGTTTATATCACATTGTAGCATTCTAAAGGAAACTATACCAGCCACTCGGTGATGAAGACGCAAGATCCGCATGAGTTCACATGTGAGCTGCTTTGTGTTTCTTTTGGACAAAGTCAAATTGGCAATTCCTGTCCTCCATCACCTTATCAAAGAAGATTTTAATCATCACGAAGCTAGTATATGATTTCATGTTTACATCGAGCCACATTAGAATCAATCAATTCTTAAGACTCATTGTATGACGACTTGTTGGCTTCCTGGCAA
Unaligned ( gi|13 ): TTTTCCTGAAGATACATCTATCAAATATTTATTATGTTTCAAGAAATCTAAATCTAAGATGCCATCATTACTTATGTCTGCTACAACGGCCTCAAAAGTGAACTCATGATTTCCCAACTCAAAGTGAAATGTGCACTTGCCCTGTAATTGCAATGGTGCTCCATCAGCTAGTACTATTTTCTGGACCACGGGCATTAAAACAACAGTTTCACTCCTATTGAGTGTATTCTCAAAAAGCTTACTTGACAGAATCGTCAGAGTAGCACCCGTATCAACCAACAACGAACAAGGTGCTTTATTTACAATAGCC
Unaligned ( gi|14 ): ACATTTATTAGTTTTCAGCGAAATCGGAAACCTAAGATACCGTCAGTAGCTTATTCTGCTACAACGCCTCAAGAAGTTGAACTCTGATCCCCAACTCAAAGTGAAATGTTGCACATTGCGCCCTGTACTACAATCGTGCTCCATCAGGGTTACTATTTTCTGTGTCACGGGCATTAAATCACCTTAGTTTCATCCAAGTGTATTCTCAAAATGTTTACTCACAGAATTCGTCCAGAGTTATCAACCCGTATCAACCAACAACGAACAAGGTGCGTCGGTAAAAATAACC
Unaligned ( gi|16 ): GATTGAATTATCAATTCATGTCTGAGAAATCGAACTCCATTTACTTGAACTTCCGCAACTTTGGTTTACCCCGGTTGTCTCTTTTGTTGTTCACTGTCTCCTTTTTGCATGTAGTAGCTGCATCGCTTTTTGCTTGCACCGACTCCTGTGTTTTTCCTTTTACATAAGCAGTTCTGTTGGCTCTGTGTCATCGCTTACCAGCAGTTACTGGCACTTAAAAGGGA
Unaligned ( gi|18 ): AATTGAATATCAATTCATGTCTGAGAACATCGCAACTCCATACTTGAGCTTCCTGCACTTTGGTTTACACCCGGTTGTCTCTTTTGTTGTTCAACTGTCTCCTTTTTTGCATGTAGTAGTGCATCGCTTTTTGTTGCAGCGACTCCTGTGTTTTTCTTTTACATAAGGCAGGTCTTTGGCTCTGTGTCATCGCTTAACCCAGTTATGGCCACTTAAAAGGGA
Unaligned ( gi|19 ): GATTGAATATCAATTCATGTCTGAGAAATCGAACTCATACTTGACTTCCTGCACTTTGGTTTACACCCGGTTGTCTCTTTTTGTTCAACTGTCTCCTTTTTGCATGTAGTAGGTGCATCGCTTTTTGTTGCACCGACCTCTGTTTTTCTTTTTACATAACAGTCTTTGGCTCTGTGTCATCGCTTACCACAGTTATGGCACTTAAAAGGGAA
Unaligned ( gi|20 ): CCATGAACCAGAATACGGTGATGAAGACGCCGACCATGTTCACTGTGCTGCTTTGTGATTTCTTTGGACAGAGTCAAATGGGCAATTTTGTCTTCCATAGCCTTCAAAGAAGTTTTAATTCATCACGAAGCTGTTTGATTTCTGGTTCACATGCACACTAGAATCCAAATCTTTAGACTCATTGTTGACACTGTTGGCTCCTCTGGCAAA
Unaligned ( gi|22 ): ACTGAATATCAATTCGTGTTTCAGAGTAATCGAACCCATATTTGACTTCATGCTCTTTGGTTTACACTCGGTTGTCTCTTTATGTTCTACTGCTTCCTTTTTGCACGTAGTAGGTGCATCGCTTTTTGTTGCACCGACCTGTTTTTCTTTTTACATGACAGTCTTTAATGGCTCTGT
Unaligned ( gi|27 ): ACATTTATTATGTTTCAAGAAATTTAAACCTAAGATGCTGTCACTGTTTATGTCTGCTACAATGGCCTCAAAAGTGAA
Alignments
lowQualScore : 2222222222 1 11 11 22222222 11 1111111 2222222 1 222 11111111111 222222 111111 11111 1 1 1 1 11 1 1 111 11 1 111111 11 11 1 11 1 1 111 1 11111111 22 2 1 11 2
lowQualScore : 0 5555555555 77 1 33 33 1 1 5 66 5 5 5 888 33333333 5 66 5 66 3 5 66 6666666 55 0000000 66 66 66 5 111 77777777777 99 666666 666666 55555 0 1 5 77 1 77 5 1 6 6 5 1 55 5 5 66 0 5 0 0 5 222 9999 66 5 11 5 0 5 333333 5 444 5 00 777 00 4 1 4 4 4 5 6 33 8 9 5 5 5 4 8 4 4 8 0 9 222 666 5 0 5 888 99999999 7 00 8 0 2 4 33 8 8 0
lowQualScore : . .......... .. . .. .. . . . .. . . . ... ........ . .. . .. . . .. ....... .. ....... .. .. .. . ... ........... .. ...... ...... ..... . . . .. . .. . . . . . . .. . . .. . . . . . ... .... .. . .. . . . ...... . ... . .. ... .. . . . . . . . .. . . . . . . . . . . . . ... ... . . . ... ........ . .. . . . . .. . . .
lowQualScore : 7 4444444444 99 4 88 88 0 0 0 99 0 0 0 888 11111111 0 99 0 22 2 0 99 2222222 88 2222222 44 99 99 0 444 66666666666 77 666666 444444 66666 7 4 7 99 4 99 7 4 7 7 7 4 77 0 0 99 0 0 0 4 0 888 6666 99 0 99 0 0 0 666666 0 888 0 66 888 66 9 5 0 4 4 0 7 66 4 0 7 7 7 0 1 0 0 1 1 4 888 222 0 0 0 888 66666666 1 66 0 4 0 0 00 0 0 0
consensus : GTCTTCCTCGA-A---CAA--T--CTA-CACATTCTCCGTCCCTTTGGTA--TT--CTNACAACTNCG-ATC--G-TTT-TCT-GGTG---AC--------GACCTGT-GTCCG--TCTG-GGTGC-TTTA-CATCCAA--CCTA-------GTGACA-CGAT-CCCC--TAC-AGCAA--GGGCA--GCTGGT---GAGAGACTC---AA---AGGGCGCCTCCC-GATCCC----GA------ACACTGC-T--CCAAA-GCTCTTG-AT--TCTTTG-TCTGC--AGG-CTG-GTCAGAC-CCCTTGTCGGACAA-GTTCAT-CTGCCTTTCTCTTAACT--CCAGCGAGACTTGGTGAAGT-CTTCT-TCCTG--ACGAC-CT-TA-CGAACTT-CCA--TTT-T--TGCTTC--ATATAT-A--AGAT-CACCTG-GGTC-ATC-TAAATTGCC-ATTAGGAA-TCACAGTCA--TC---A--TCTTCCATAACTACAGCTAACG-AACTTTGTGT-GGC-ATTTTTAATCCCGCAGGTTC-A--ATCAAAAAGATTTCACAACCATG-TGCGTT-A-TCGGTTTTCT-GAAACTTTTCGT-ATCC-CTGCCATTGACTAAATGGTCC-T-TAACAATCC-G-TATC-GACAG-G-G---GCAGG--CGTGTTCTTGTCCAGAGGACAAATCATATCACTCCTTGTGAGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACATTCCTAATTGA-CCTC-AA-GTTGGA-G-CTCATGTTCCAGTTCCTCCAACATACATTT
Reference ( family-4137 ) : GTCTTCCTCGA-A---CAA--T--CTA-CACATTCTCCGTCCCTTTGGTA--TT--CTNACAACTNCG-ATC--G-TTT-TCT-GGTG---AC--------GACCTGT-GTCCG--TCTG-GGTGC-TTTA-CATCCAA--CCTA-------GTGACA-CGAT-CCCC--TAC-AGCAA--GGGCA--GCTGGT---GAGAGACTC---AA---AGGGCGCCTCCC-GATCCC----GA------ACACTGC-T--CCAAA-GCTCTTG-AT--TCTTTG-TCTGC--AGG-CTG-GTCAGAC-CCCTTGTCGGACAA-GTTCAT-CTGCCTTTCTCTTAACT--CCAGCGAGACTTGGTGAAGT-CTTCT-TCCTG--ACGAC-CT-TA-CGAACTT-CCA--NTT-T--TGCTTC--ATATAT-A--AGAT-CACCTG-GGTC-ATC-TAAATTGCC-ATTAGGAA-TCACAGTCA--TC---A--TCTTCCATAACTACAGCTAACG-AACTTTGTGT-GGC-ATTTTTAATCCCGCAGGTTC-A--ATCAAAAAGATTTCACAACCATG-TGCGTT-A-TCGGTTTTCT-GAAACTTTTCGT-ATCC-CTGCCATTGACTAAATGGTCC-T-TAACAATCC-G-TATC-GACAG-G-G---GCAGG--CGTGTTCTTGTCCAGAGGACAAATCATATCACTCCTTGTGAGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACATTCCTAATTGA-CCTC-AA-GTTGGA-G-CTCATGTTCCAGTTCCTCCAACATACATTT
gi|10 : CT-GATC------GA------ACACTGT-C--CAAAA-GCTCTTG-AT--TCTTTG-TCTGC--AGG-CTG-GTCAGA--CCCTTGTCGGACAA-GTTCATGCTGCCTTTCTCTTAACT--CCAGCGAGACTTGGTGAAGTCCTTCT-TCCTGACACGAC-TT-TACCGAACTT-CCAGTTTT-T--TGCTTC--ATATATAA--AGAT-CACCTG-GGTCAATC-TAAA-TGCCAATTAGAAA-TCACAGTCA--TTCAAA--TCTTCCATAACTACAGCT-ACG--ACTTTGTGT-GGC-ATTTTTAATCCCGCAGGTTCAA--ATCAAAAAGATTTCACAACCA-G-TGCGTTAA-TCGGTTTTCT-G--ACTTTTCGT-ATCC-CTG-CATTGACTAAATGGTCC-T-TAACAATCCGG-TATC-GACA--G-G---GCAGG--TG---TCTTGTCCAGAGGACAAATCATATCACTCCTTG-GAGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACA-TCCTAATTGA-CCTC-AA-GTTGGA-GCCTCATGTT-CAGTTCCTCCAACAT-CATTT
gi|11 : GTCTTCCTCCACA---CTT--T--CTA-CACATTCTCCGCCCCTCTGATACTTT--CTTACAACTCTG-ATC--G-TAT-TCT-GGTG---GC--------GACCTGT-GTCTG--TCTG-GGTGC-TT-A-CATCCAA--TCTA-------GTGACT-CGAT-CTC---TAC-AGCAA--GGGCA--G-TGAT---GTGAGACC-----A---AGGGCGCCTCCT-GATCCG----GA------ACACTGT-T--C-AAA-GCTCTTA-AT--TCTTTG-TTTGC--AGG-CTG-GTCAGAC-ACCTTGTCG-ACAA-GCTCAT-CTGCCTTTCTCT-AACT--CCAAGGAGACTTGGCGAAGT-CTTCT-TTCTG--ACGAC-TC-TA-CCTACTT-CCA--GTT-C--TGCTTC--ATGTAT-A--ATAT-CACCTG-GATC-ATC-----TTGCC-ATTCAGAA-TCACAGTCA--CC---A--TCTTCCATTATTACAGCTAACG-AGCTTTGTGG-GAT-ATTTTttc
gi|12 : CAGTTCCTCCAACATACATTT
gi|15 : GTCTTCTTCGA-ATTTC----T--CCA-CGCACCCTCCCTCCCATTGGTATTTT--CTGATGA-TGCGTACC--G-TTT-TCT-GATG---ACT-------GACGCGT-GT-TG--TCTG-GGTAC---TAGCATCTAA--CATA-------AGCACT-TGAT--GTT--TGC-AACAC--GGGCAATGCTGttcctaaagttacatctacttaacatttattgtttcacgaaatctgaaacctaagataccgtcagtactttgtctgctacaacgcctcaaagttgaactctgattccccaactcaagtgaaatgtgcacttgccctgtacttacaatggtgctccatcagggttactattttctgtgtcacgggcattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacccgtatcaaccaacaacgaacaaggtgcgtcgttaaaaataacc
gi|17 : --TT--TTTAAAACTCTG-ATTTTG-TTT-TCT-GGTGGACACCTTGCGGGGACATGTTGTTCGCGTCTG-GGTAC--TTG-CATTTAAGCCCTATTTATGTGTGAGAGAGATGTCTC--TACTAGCGAATGTGCA--G-TGATGCAGGGAGACTCTTTAA---TTGTCCTGTCCCTGATTTCTCGTGAATAGTTACACTG--T--CCAGA-TCTCTTT-GTAATTTTTG-TCTGCGGAGGAATG-GTCAGcaatgacacctgtttctcgtcattggatatccgaaatctctgttcgcttgaaactgtgttcactgcttccacttcttctgctcacttgactgctctacggtctgaattcctgcatgcaggtccgtttatctttct
gi|2 : TTTCT-GA--CTTTTCGT-ATCC-CTGCCATT-ACTAAATGGTCC-T-TAACAATCC-G-TATC-GACAG-G-G---GCAGG--CGTGTTCTTGTCCAGCGGACAAATCATATCACTCCTTGTGAGGAAATGATATTGTCTCCTTCAGGCTGATTCTGCTAAACA-TCCTAATTGA-CCTC-AATGTTGGA-G-CTCATGTTCCAGTTCCTCCAACATACATTT
gi|21 : CAA-GTTCAT-CTGCCTTTCTCTTAACT--CCAGCGAGACTTGGTGAAGT-CTTCT-TCCTG--ACGAC-TT-TA-CCGACTT-CCA--GTT-T--TGCTTC--ATATAT-A--AGAT-CACCTG-GGTC-ATCTTAAATTGCC-ATTAAGAA-TCACAGTCA--TC---A--TCTTCCATAACTACAGCTAACG-AACTTTGTGT-GGC-ATTTTTAttgcctaaaggtttacatctgacttacatttcattagtttcgcgaaatctgaacctaagataccgtcagtacttatgtctgctacaacgcctcaaaagttgaactcatggatcacccaactcaagtgaaatgttgcacattgcccgtgtacttcaatgtgctccaatcagggttatctattttctctgtgtcacgggcattaagatcacacgttagtttcatcctagagttgtgattctcaaaatgttttactcgacagaaattgcgtccagagttaatcaacccgtatcaaccaacaacgaacaaggtgcgtcgataaaaaataacccagattgaatatcaattcatgtctgagaaatcgaactccattacttgacttcccgcactttggtttacacccgggttgtctcttctttgttcactgtctccttttttgcatgtagtacgtgcatcgctttttgcttgcacgacctctgtgtttttccttttacataagcagtctttggctctgtgtcatcgcttaaccagcagttatgcacttaaaaggga
gi|23 : GTCTTCCTCGA-----CAAATT--CTA-CACATTCTCCGTCCCTTTGGTA--TTTTCTAACAACTCGG-ATC--G-TTT-TCT-GGTG---AC--------GACCTGT-GTCCG--TCTG-GGTGC--TTA-CATCCAA--CCTA-------GTGACA-CGAT--CCC--TAT-AGCAA--GGGCA--G-TGGT---GAGAGA-TC----A---AGGGTGCCTtc
gi|24 : CCAG-GGACAAATCATATCACTCCTTGT-AGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACATTCCTAATTGA-CCTC-AA--TTGGAGG-CTCATGTTCCAGTTCCTCCAACATACATTT
gi|25 : TGGCGAAAT-CTTCTATTCTG--ACGAT-CT-TACCGATCTT-CCA----------GCT----AT-CAT-A--AGATCCACCTG-GATC-ACC-TG----GCC-AT----------CAGACT--TC---A------CCAC-ACTACAGTTGACGTAACTTTttgccttaaagttttactcttgact
gi|26 : AACG-AACTTTGTGT-GGC-ATTTTTA-TCCC-CAGGTTC-A--ATCAAA--GATTTCACAACCA-G-TGCGTT-A-TCGGTTTTCT-GAAACTTTTCGT-ATCC-CT
gi|28 : n--ATCAAAA-GATTTCACAACCA-G-TGCGTT-A-TCGATTTTCT-GAAACTTTTCGT-ATCC-C
gi|29 : agA--TA---A--TCTTCCATCACTACAGTTGACA-TGCTTTGTGT-GGC-ATTTCT
gi|3 : TTTCT-GAAACTTCTCATTAGCCTCCACCAT-------ATGATCC-GGTAACACTTC---TATCAGATGG-A-ATCAGTAGA--CGA--------CCAGAG--CAAATAATTTCACTCATGG-GCGGAATCGTTATCGTCTCCTTTAGACTTATGTTA--AAACA-CCCTAGGTGA-CCTTGGA-GCTGTA-G-CTCTTGCT-CAATCCCTCCAACATAtttt
gi|4 : GTCTTCCTCGC-A---CAA--T--CTAACACATTCTCCGTCCCTTTGGTA--TT--TCTACAACTGCG-ATC--GGTTT-TCT-GGTG---AC--------GACCTGT-GTCCG--TCTGCGGTGC-CTTA-CATCCAA--CCTA-------GTGACA-CGAT-CCAC--TAA-TGCAA--GGGCA--GCTGGT---GAGAG--TC---AA---AGGGTGCCGTTC-GATCC-----GA------ACACTGCCT--CCAAAAGCTCTTGGAT--TCTTTG-TCTGC--AGG-CTGAGTCAGAC-CCCTTGTCG-ACAA-GTTCAT-CTGCCTTTCTCTTAACTGCTCAGCGAGACTTGGTGAAGT-CTTCT-TCCTG--ACGACACTGTA-CGA-CTT-CCA--TTT-TGTTGCTTC--ATATAT-AC-AGAT-CACCTGCGGTC-ATC-TAAATTGCC-ATTAAGAAATCACAGTCAATTC---A--TCTTCCATAACTACAGCCTACG-AACTTTGTGT-GGCCATTTTTAATCCC-CAGGTTC-ACAATCAAAAAGATTTCACCAACATG-TGCGTT-AATCGGTTTTCTTGA--CTTTTCGT-ATCC-CTGC-ATT-ACTAA-TGGTCC-C-TTACAATCC-GGTATC-GACAG-GCG---GCAGG---GTGTTCTTGTCCAG-GGACAAATCATATCACTCCTTGT-AGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACATTCCTAATTGA-CCTC-AA--TTGGAGG-CTCATGTTCCAGTTCCTCCAACATACATTTaagcttacccaaagagacatcaatgaggcatttatgttgtttaagaaatccaggccaatatttccttcagtgctgatatcggcaacgaccacgtcatgatcgaatgagaaggtgccaattgatatttggagctgacatctacctttacttgcaacggagctccatctgctaatacaatttcttgtgtaactggcatcaattccttcctgcctgtgctttcaattttccgttatacagtatgcgacaaaatcgtcatgtggcacctgtatcaaccaataaactgcacgggatctggttaatagtagcctcagtgaattatctactctggttcgagtgagagtaccgcttgcagtcggaccctttatcatctggtcgttcttcagattgttccactggtgtatttaagacatactctcttcttcttggacctgaaattctttttgctataaacagtacacggctttatgtccccgttttccacaattgtagcatttaaaagggaa
gi|5 : tTCTTCCTCGA-C---CAA--T--CTAACACATTCTCCGTCCCTTTGGTA--TT--CTAACAACTGCG-ATC--G-TTTCTCT-GGTG---AC--------GACCTGT-GTCCG--TCTG-GGTGCCTTTA-CATCCAA--CCTA-------GTGACA-CGAT-TCCC--TAA-TGCAA--GGGCA--GCTGGTC--GAGAGA-TC---AA---AGGGTGCCTTC--GATCCC----GA------ACACTGC-T--CCAAAAGCTCTTG-AT--TCTTTGCTCTGC--AGG-CTG-GTCAGAC-CCCTTGTCGGACAACGTTCATGCTGCCTTTCTCTTAACT--CCAGCGAGACTTGGTGAAGT-CT-CT-TCCTG--AC-AC-CT-TA-CGAACTTTCCA--TTTGT--TGCTTC--ATATAT-ACAAGAT-CACCTGCGGTC-ATC-TAAATTGCC-ATTAG-AA-TCACAGTCA--TC---AAATCTTCCATAACTACAGCTA-CG-AACTTTGTGTTGGC-ATTTTTAATCCCGCAGGTTC-AC-ATCAAAA-GATTTCACAACCATGCTGCGTT-A-TCGGTTTTCT-TGAACTTTTCGT-ATCC-CTGCCATTGACTAA-TGGTCCCT-TAACAATCC-G-TATC-GACAGAG-G---GCAGG--TGT---CTTGTCCAGAGGACAAATCATATCACTCCTTGT-AGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACATTCCTAATTGACCCTC-AA-TTTGGA-G-CTCATGTT-CAGTTCCTCCAACATACATTTttgcc
gi|6 : GTCTTCCTCGG-A----AA--T--CTA-CACATTCTCCGTCCCTTTGGTA--TT--CTAACAACTGCG-ATC--G-GTT-TCTCGGTG---AC--------GACCTGT-GTCCG--TCTG-GGTGC-TTTA-CATCCAA--CCTA-------GTGACA-CGAT-CCACGTTAG-AGCAA--GGGCA--GCTGGTC--GAGAGACTC---AA---AGGGTGCCGTTC-GATC------GA------ACACTGC-T--CCAAA-GCTCTTG-AT--TCTTTGCTCTGC--AGG-CTGAGTCAGAC-CC-TTGTCGGACAA-GTTCAT-CTGCCTTTCTCTTAACTGCCCAGCGAGACTTGGTGAAGT-CCTCT-TCCTG--ACGACGCT-TA-CGAACTT-CCA--TTT-T--TGCTTC--ATATAT-A--AGAT-CACCTG-GGTC-ATC-TAAAATGCC-ATTAGAAA-TCACAGTCAA-TC---AA-TCTTCCATAACTACAGCTAGCG-AACTTTGTGT-GGC-ATTTTTAATCCCGCAGGTTC-A--ATCAAAAAGATTTCACCAACATG-TGCGTT-A-TCGGTTTTCT-GA--CTTTTCGT-ATCC-CTGCCATT-ACTAAATGGTCC-T-TAACAATCC-G-TATC-GACAG-G-G---GCAGG--CGTGTTCTTGTCCAGCGGACAAATCATATCACTCCTTGTGAGGAAATGATATTGTCTCCTTCAGGCTGATTCTGCTAAACA-TCCTAATTGA-CCTC-AATGTTGGA-G-CTCATGTTCCAGTTCCTCCAACATACATTTttc
gi|7 : CCAGAGGACAAATCATATCACTCCTTG-GAGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACA-TCCTAATTGA-CCTC-AA-GTTGGA-GCCTCATGTT-CAGTTCCTCCAACAT-CATTT
gi|8 : TCTCCCTC-A-A---CAC--TTTCTA-TACATTCTCCGTCCCTATGATA--TTTTCTTACAACTCTG-ATC--G-TTT-TCT-GGTG---GC--------GACCTGT-GTCCG--TCTG-GGTGC-TT-A-CATCCAA--CCTA-------GAGACT-CGAT--CTC--TAC-AGCAA--AGGCA--A-TGAT---GAGAGAC-C---AAGCTAGGGCGCCTCCT-GATCCC----GA------ACACTG--TGACCATA-TCTTTCG-AT--TCATTG-TCTGC--AGG-TTG-GTCAGGCACCCTTTT--GACAA-GCTCAT-CTGCCTTTCTTTTAACT--CCAGTGAGACTTGGTGAAAT-CTTCT-TTCTG--ACGAC-TC-TA-CCGACTT-CCA--GTT-C--TGCTTCATATATAT-A--AGAT-CACCTG-GATC-ATC-----TTGCC-ATTTAGAA-TCACAGTCA--TC---A--TCTTCCATTACCACAGCTAACG-AGCTTTGTGG-GAC-ATTTGT-ATCCC-CAGGTTC-A--ATC--AAAGATCTCACATCCA-G-TGCGTT-A-CTGGTTTTCT-GAAACTGTTCGT-ATCC-CT-CCATT-ACT-AATGGTCC-C-TTACAATTC-G-TATC-GACAG-G-G---GCAGGTACATGTATCTGTCCAGG--------------ACTCCTTG-GAGGAAATGACATTGTCTCCTTCATGCCGACTCTG-T-AACA-TCCTAAGTGACCCTC-AA-GCTGGA-A-CTCATGTT-CAGTCCCTCCAACATACATTTttcctaaagttttactctacttacaatttattgtttcagcgaaatctgaaacctaagataccgtcagtactttgtctgctacaacgcctcaaagttgaactctgattccccaactcaagtgaaatgtgcacttgccctgtactcatggtgctccaatcagggttactattttctctgtgtcacgggcattaaatcaccagtttcatccaagttgtgattctccaaatgtttgactcgacagaatcgtcccagagttaatcaacccgtatcaaccaacaacgaacaaggtgcgtcgtaaaaataacccagattgaatatcaattcatcgtctgagaaatcgaactcatacttgagacttcctgcaactttggtttaccccgttgtctcttttttgttcactgtctcctttttgcatgtagtagtgcatcgctttttgttgcaccgactcctcgtgtttttctttttacataagcagttctttggctctgtgtcatcgcttaaccgcagttatggccacttaaaaggga
gi|9 : TTTCT-TGAACTTTTCGT-ATCC-CTGCCATTGACTAA-TGGTCCCT-TAACAATCC-G-TATC-GACAGAG-G---GCAGG--TGT---CTTGTCCAGAGGACAAATCATATCACTCCTTGT-AGGAAATGATATTGTCTCCTTCAGGCTGATTCTG-TAAACATTCCTAATTGACCCTC-AA-TTTGGA-G-CTCATGTT-CAGTTCCTCCAACATACATTTt
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): AGCTGACCTTGGGAGTTTAGGCTCGTGTTCAATTCCTCACATGAATAAGCTTACCAAAAGAAGACATCACGAGGCATTTATAGTGTTTGAGATAAACTCCAGGCCCCAATATTCTTGTCAGTGAACTGAGTATCCGCATATGGCCACGTCTAATCGAAATGAGAAGGTTGCCAAGTGATATATGAAGCTGAGCATTACACCTTTAACTTGCAATGGATCATCCATCTGCTTAACGACAACGTATCTTGTGTCGCTTCCTGTGCTTTCAATTTTGTTTCCGAATATAATCGTATGCGACAAGAAATCGTCATAAAGTGGGGTGCACCATGATCAACGCAATACTGCAAGGGATCTGATTAAAACAGTGCCCTTAGTGAATTAATTCAGATTGAATAATCTATTACTGGCTTTGAGTGATTGTACCACTTGCAGTCCCTTGGACCCTTTATCACCAATTACCGGCCCTGGTATAAATCCGATAAGTCTTCTCAGATGTTCACTGGTTATACTTGAGCATACTATCCTTCCTTCTTGGATTGAATTCTTTTTGCTAATAACAGTACTACGGCTATGTCCATGTTTATATCACATTGTAGCATTCTAAAGGAAACTATACCAGCCACTCGGTGATGAAGACGCAAGATCCGCATGAGTTCACATGTGAGCTGCTTTGTGTTTCTTTTGGACAAAGTCAAATTGGCAATTCCTGTCCTCCATCACCTTATCAAAGAAGATTTTAATCATCACGAAGCTAGTATATGATTTCATGTTTACATCGAGCCACATTAGAATCAATCAATTCTTAAGACTCATTGTATGACGACTTGTTGGCTTCCTGGCAA
Unaligned ( gi|13 ): TTTTCCTGAAGATACATCTATCAAATATTTATTATGTTTCAAGAAATCTAAATCTAAGATGCCATCATTACTTATGTCTGCTACAACGGCCTCAAAAGTGAACTCATGATTTCCCAACTCAAAGTGAAATGTGCACTTGCCCTGTAATTGCAATGGTGCTCCATCAGCTAGTACTATTTTCTGGACCACGGGCATTAAAACAACAGTTTCACTCCTATTGAGTGTATTCTCAAAAAGCTTACTTGACAGAATCGTCAGAGTAGCACCCGTATCAACCAACAACGAACAAGGTGCTTTATTTACAATAGCC
Unaligned ( gi|14 ): ACATTTATTAGTTTTCAGCGAAATCGGAAACCTAAGATACCGTCAGTAGCTTATTCTGCTACAACGCCTCAAGAAGTTGAACTCTGATCCCCAACTCAAAGTGAAATGTTGCACATTGCGCCCTGTACTACAATCGTGCTCCATCAGGGTTACTATTTTCTGTGTCACGGGCATTAAATCACCTTAGTTTCATCCAAGTGTATTCTCAAAATGTTTACTCACAGAATTCGTCCAGAGTTATCAACCCGTATCAACCAACAACGAACAAGGTGCGTCGGTAAAAATAACC
Unaligned ( gi|16 ): GATTGAATTATCAATTCATGTCTGAGAAATCGAACTCCATTTACTTGAACTTCCGCAACTTTGGTTTACCCCGGTTGTCTCTTTTGTTGTTCACTGTCTCCTTTTTGCATGTAGTAGCTGCATCGCTTTTTGCTTGCACCGACTCCTGTGTTTTTCCTTTTACATAAGCAGTTCTGTTGGCTCTGTGTCATCGCTTACCAGCAGTTACTGGCACTTAAAAGGGA
Unaligned ( gi|18 ): AATTGAATATCAATTCATGTCTGAGAACATCGCAACTCCATACTTGAGCTTCCTGCACTTTGGTTTACACCCGGTTGTCTCTTTTGTTGTTCAACTGTCTCCTTTTTTGCATGTAGTAGTGCATCGCTTTTTGTTGCAGCGACTCCTGTGTTTTTCTTTTACATAAGGCAGGTCTTTGGCTCTGTGTCATCGCTTAACCCAGTTATGGCCACTTAAAAGGGA
Unaligned ( gi|19 ): GATTGAATATCAATTCATGTCTGAGAAATCGAACTCATACTTGACTTCCTGCACTTTGGTTTACACCCGGTTGTCTCTTTTTGTTCAACTGTCTCCTTTTTGCATGTAGTAGGTGCATCGCTTTTTGTTGCACCGACCTCTGTTTTTCTTTTTACATAACAGTCTTTGGCTCTGTGTCATCGCTTACCACAGTTATGGCACTTAAAAGGGAA
Unaligned ( gi|20 ): CCATGAACCAGAATACGGTGATGAAGACGCCGACCATGTTCACTGTGCTGCTTTGTGATTTCTTTGGACAGAGTCAAATGGGCAATTTTGTCTTCCATAGCCTTCAAAGAAGTTTTAATTCATCACGAAGCTGTTTGATTTCTGGTTCACATGCACACTAGAATCCAAATCTTTAGACTCATTGTTGACACTGTTGGCTCCTCTGGCAAA
Unaligned ( gi|22 ): ACTGAATATCAATTCGTGTTTCAGAGTAATCGAACCCATATTTGACTTCATGCTCTTTGGTTTACACTCGGTTGTCTCTTTATGTTCTACTGCTTCCTTTTTGCACGTAGTAGGTGCATCGCTTTTTGTTGCACCGACCTGTTTTTCTTTTTACATGACAGTCTTTAATGGCTCTGT
Unaligned ( gi|27 ): ACATTTATTATGTTTCAAGAAATTTAAACCTAAGATGCTGTCACTGTTTATGTCTGCTACAATGGCCTCAAAAGTGAA