lowQualScore : 1111111111111111111 1111111111111111111111111111
lowQualScore : 444 11111 111 1111 11111 22222222222 44444444444 1 33333 2222 11 1 1 1 1 222222222222222 1 2222 11 1 3333333 111 222 2222 666666666666666 11 1 9999999999999999999 11 222 1 77777777777777777777777 11 66666666666666666666 11 1 7777777777777 11 9999999999999999999 1 5555555 1 4444444444444444 3333333333333 2 2222222222222222222222222222 55 22
lowQualScore : 8 0 888 9999 1 88888 1 7 111 3 1 1 4444 0 88888 44444444444 0 11111111111 3 33333 8888 88 3 0 88 3 3 3 6 3 999999999999999 3 8888 99 7 4444444 444 3 33 9 666 7 1111 222222222222222 33 0 3 2 8 666 6 8 3333333333333333333 3 88 333 3 33333333333333333333333 00 66 88 11 8 22222222222222222222 00 3 3 4 3 3333333333333 2 22 7777777777777777777 4 6 6 5 4 1111111 3 5 6666666666666666 3 3333333333333 7 5555555555555555555555555555 77 6 6 11
lowQualScore : . . ... .... . ..... . . ... . . . .... . ..... ........... . ........... . ..... .... .. . . .. . . . . . ............... . .... .. . ....... ... . .. . ... . .... ............... .. . . . . ... . . ................... . .. ... . ....................... .. .. .. .. . .................... .. . . . . ............. . .. ................... . . . . . ....... . . ................ . ............. . ............................ .. . . ..
lowQualScore : 0 8 333 4444 7 33333 0 2 777 3 0 0 2222 7 77777 33333333333 8 55555555555 3 33333 3333 33 7 7 33 3 3 3 0 3 333333333333333 3 3333 33 0 3333333 222 5 55 2 222 2 2222 555555555555555 88 0 7 0 0 444 4 0 0000000000000000000 7 33 333 3 77777777777777777777777 55 22 88 00 0 77777777777777777777 00 7 3 7 7 3333333333333 5 00 0000000000000000000 0 0 0 0 0 5555555 0 5 5555555555555555 0 5555555555555 5 0000000000000000000000000000 00 0 0 00
consensus : CGAG-GATAATCAG-TAACGCCGG-C--GAATCGGTTGTAACGCCAG--ATTCCGGTAATTGTAA---CACCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AN---TAAAACATCCCANTTTCT-TCAAAT-GAGCTACAATATG-----AAAA----AGATACATAGCTNGTACGAGGCACAATAAGTTTATTGA--TCGTATC-GTTTAT-CGAT-GATACCTGA-TTTTAGCTTCGTT-TTTT-AGA-TCATT----CGGG-AGAAAGTCAC--AA-GGTTGAC-GGAAAANTGCATCGGAAGAAGTTTCGAACGNAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCGNATAAACATAAACTCATTTCA-TAAACAACGATTGGAAAA-TCAC--A----ATTT-TG-TTG-TTCAAACAAACCGG--TTT---TACA-AT-T-----TA-TCGTC-TTTTGAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA----T-------TTTATCCATNAATCGA-ATTGCGNATT-------------GTTTNAGACGAAGNCAGTANATCCCAACAAATACAGATGACAGCGCGNTATCAGAACATAAANNNNNNNNNNNNNNNNNNNAATGGAATTAANCAAATCATCANTGAGNACACAGCGTCACGNCATTNGAACCGTATNGATACTNCNCNGCCCCCTTCTGATTTTTTCCCCATTTATTTNGTTGCCGTTGTTGCAGTTACCGGCGATAAATTCTCCAAAATGTGTGGATTTCCAG
Reference ( gi|1 ) : CGAG-GATAATC---TAACGCCGG-C--GAATCGGTTGTAACGCCAG--ATACTGGTAATTGTAA---CGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG---TAAAACATCTCACTTTGT-TCAAAT-GAGCTACAATATG-----AAAA----AAATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATC-GTTTAT-CGAT-GATGCCTGA-TTTTGGCTTCGTT-TTTT-AGA-TCATT----CAGA-AGAAAGACAC--AA-GTTTGAC-AGAAAAATGCATCGGAAGAAGTTTCTTACGTAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATGAACTCATTTCA-TAAACAACGATTGGAAAA-TCACAAATATTATTT-TA-TTG-TTCAAACAAACCGG--TTT---TACA-AT-T-----TA-TCGCC-TTTTAAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAACTTTTT-----T-------TTTATCCATGAATCAA-ATTGTACATT-------------GTTTCAGGTGAAG-------------AC---CATAGATGACAGTGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATAGAATGAAATAAA-----ACTGAGAACACAGTG-CACGTTATTT-A--CATATTAATACTACCCC-CCCCC--CTGATGTTTT-----TTT----GGTTG-----------GTTACCGGCGATAT-TTCTCCGAAATATGTGGATTCGCAGCTAGTGTATCCTATCCGTATCTCGATTTATGTGTTCACACTTTTATAAG
gi|17 : CGAGTGA-AATCAG-TAACGCCGG-C--GAATCGGTTGTA
gi|3 : gttcacGAG-GGTCATCAG-TAACGCCGG-C--GAATCGGTTATAACGCCAG--ATTCCGGTAATTGTAA---CACCGCATTAACGGCGTTT----TACACGAC--AGAAGCAGATATCGGGA------AT---TAAAACATCCCATTTCTT-TCAAAT-GAGCTACAATATG-----AAAA----AG-TGCATAGCTTCTACGAGGCACAATAAGTCTATTGA--TCGTATC-GTTTAT-CGAT-GATATCTGA-TTTCAGCTTCGTT-TTTG-AGA-TCATT----CAGG-AGAAAGTCAC--AA-AGTTGAC-AGAAAAATGCATCGGAAAAAG-TTCTAACGCAGAT----TTTT---------------ACAA--ATCACAGGCACAT-AC
gi|4 : GAA-GATAATCAG-TAAAGCCGG-T--GA-----------CGCTA-------TGGT---TGTTA---TGCCGAATTAACGGCACTT----CACGC-ATTTAGAAGCAGATACATGTATCTGTTAC---TAAAACATC-CAATTTCTCTCAAAT-GAGCTACAATCTGGAAAAAAAA----AAATACATAGCTAGTACGAGGCACAATACGTTTATTGA--TCGTATC-GTTTAT-CCGT-GATACCTGA-TTTT-------------T-AGA-TAATT----CGGG-AGAAAGTCATTTAATGGTTGAT-GAAAAATTGCATCGAAAGAAGTTTCGAGCGTAGATTTTTTTTT---------------AAAAATATTACAGGCAC
gi|12 : actGAG-GGTAATCAG-TAACGCCAG-C--GATTC
gi|2 : cactAG-TATAATCAGGCAACACCGG-GTGGAATCGGTTGTAACGCCAG--ATTTCGGTCATTGTAA---CA--GCAATTACGGCGTTT----TACACAAG--AAA--CAGATACCGGGA------AGGGGTTAAAC--------------CAAATTGAGCTACAATATG-----AAAAGGAAAGATACATAGTTGGTACAGAGCACAATAAGTTTATTGAATTCGTATCGGTTTATCCGATGGATACCTAACTTTTAGCTTCGTTATTTTGAGATTCATTTGAACAGGTGGAAAGTCACG-AG-GTTTGATGGGAAAAATGCATCGGA---------------AGAT----TTTT---------------ACAA--ATCGCGGGCACATAACTCAAATATACCCGAACTCATTTCATTAAAC-ACGATTG--AAA-TCAC-------ATTT-TGCTTGTTTCAAACAAAACAATTTTT---TACT-AT-A-----TAGTCGTCGTTTTGAAGTCATTTTTCGAAGTAACAtggacattgtaatagcacggcgttcacgcgtttgccatatacagaagcagataccataaattaaaacattcaatttctgtt
gi|10 : ---TAACGCTGGGC--GAATCAGTTGTAATGCCAG--ATTCCGGTAATTGTAA---CACCTCATTCATGGCGTTT----TACACAAG--AGAAGATAATATCGGGA------AG---AAAAA
gi|14 : agACACCGG-C--GAAACGGTTGTAACGCCGG--GTTCCGGTAATTGTAA---CACCGCATTCA-GGCGTTT----TACGCGAG--AGAAGCAAATACCGGGA------AG---TAAAACATGCCATTTTtgttaaatttcttttaagggatgataaa
gi|12 : ttGTAACGCCAGCGATTCTGGACATTGTAATAGCACGGCGTTCACG-CGTTTGCCATATAC-----AGAAGCAGATACCATAA------AT---TAAAACAT-TCAATTTa
gi|11 : cactgagggtaatcaTGAT-GAACAACTGCAACGAAAGAAGTTTCGAACGAAGAT----TTTTTTTTACCTATCACAGACAT--ATTATAGGCACAT-AATCATATAAAAATAAACTTAGTTCA-TAAAGAACAATTTAAGAA-TCACctgtt
gi|16 : GACATAC-ACTCGCATAAACATAAACTCATTTCA-TAAACAACGATTGGAAAA-T
gi|5 : ATAAACTCATTTCA-TAAACAACGACTGGAAAT-TCAC--AT----TTT-TG-ATG-TTCAAACAAACTGG--TTT---TACA-ATATATATATA-TCGTC-TTTTGAAGTCATTTTAGAAAGTAACACCCGGTAACATGGAACAG-TGA--CGCCGATCACTGGCA------T-----T-------TTTA--CATACATTGACACTGTGCATT-------------
gi|9 : CTTATATCA-TAA---------GAAAAACTGACAGA-ATTACTCATG-TAA-TGCAAACAAGCAGG--TTTACCTACACAT-T-----GA-T------------------TTCGAAAGTAGCACCTCAAAACATGGAACAATTAA--CG-CGATCGT-GGTAATATTAC-----T-------TTTATTCttag
gi|6 : -TTTT---GTCATTTTCAAAAGTAACACCAAGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTACA--TAGAAGGATTTAACCATCAATCAA-ATTAAATATT-------------GTTTCAGACGAAGACAGTAAATCCCAAC---TATAGATGACAGTGCGTTATCAGAA
gi|18 : ttCGTAACTTGGAA-AG-TAA--CGCCGATCAC-GGTAATTTCTT-----
gi|7 : TAACAT--AACAA--AATTCGC-GGTCAT-GATAATTTCTTAACGAT-------TCTATCCATGAGTCAA-ATTGCAAATTTTTCTCTAAATTCGTTTAAGACGAAGTTAGTAT------ACAAATACAGATGACAACGTGATATCAGAACATAAAa
gi|13 : AATGGAATTAATTAAATCATCAATGAGAACACAGTA-CAAGACATTTGA--AATATTAATACTCCTCT-CCCCCTTCTGAT-TTTTCCCCATTT----TGTTG-----------GTTACTGGTGAT
gi|8 : aAAACAAA-----ATTAAACAC-CAACGTCACAT-ATTA-AACCGTATGGATACTATACAGCTTCT--CTGATTTTTT-----TTTATTTGGTTGCCGTTGTTGCAGTTACCGGCGATAAATTCTCCAAAATGTGTGGATTTCCAG
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): AGCAATGATGCCCAGGTGACTGACCATTCTTACATGCATTGACATAATCTTGCATTTTCACCACAGA
Alignments
lowQualScore : 1111 11111 222222222222 1 22222 2222 11 1 1 1 1 1 1 1 2222 1 11 1111 1111 555555555555555 11 11 44444444 1 1 11 111 444444444444 11 55555555555555 1 5555555555555 8888888888888888 1111111111111111111 55555 2 11 33333 22 22 555555555 22222222222 1
lowQualScore : 6 5 7777 0 1 0 0 3 2222 11111 000000000000 1 0 6 1 6 55555 1111 3 1 33 0 0 0 0 7 0 0 0 1111 2 0 33 0000 8 1 0 5 66 3 7777 000000000000000 11 8 33 6 00 77777777 0 0 0 33 777 222222222222 11 66 0 6 99 6 5 66666666666666 1 1 2 0 777 5555555555555 1 1 5555555555555555 0 0 1 9999999999999999999 3 11 11111 1 1 7 0 3 33 44444 0 11 1 1 44 22 7 555555555 1 77777777777 5 4 2
lowQualScore : . . .... . . . . . .... ..... ............ . . . . . ..... .... . . .. . . . . . . . . .... . . .. .... . . . . .. . .... ............... .. . .. . .. ........ . . . .. ... ............ .. .. . . .. . . .............. . . . . ... ............. . . ................ . . . ................... . .. ..... . . . . . .. ..... . .. . . .. .. . ......... . ........... . . .
lowQualScore : 7 7 0000 4 4 1 7 0 1111 99999 666666666666 4 7 6 0 7 00000 2222 2 0 88 0 0 0 0 0 0 0 0 2222 0 0 88 2222 0 0 8 6 00 8 0000 000000000000000 00 0 00 7 33 88888888 0 0 2 88 555 888888888888 22 44 2 7 22 7 7 66666666666666 0 0 0 0 222 0000000000000 0 0 3333333333333333 7 7 0 0000000000000000000 0 77 00000 0 0 3 7 7 00 33333 7 77 0 0 33 00 3 000000000 0 00000000000 5 0 5
consensus : CGAG-GATAATCAG-TAACGCCGG-C--GAATCGGTTGTAACGCCAGATTCCGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCCCANTTTCT-TCAAATGAGCTACAATATG-----AAAA----AGATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATC-GTTTAT-CGAT-GATACCTGA-TTTTAGCTTCGTT-TTTT-AGA-TCATT----CAGG-AGAAAGTCAC--AA-GG-TTGAC-GGAAAAATGCATCGGAAGAAGTTTCNAACGTAGA----TTTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATCACA------ATTTTG-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGTC-TTTTGAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA----T---------TTTATCCATGAATCGA-ATTGTACATT-------------GTTTCAGACGAAGACAGTA-A------C---TATAGATGACAGCGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATGGAATNAAATAAA-----ANTGAGAACACAGCG-CACGTCATTTGAA-CATATTAATACTACNCN-CCCCC-TCTGATTTTTT-----TTT-TTTGGTTGCCG-TGTTGCAGTTACCGGCGATAANTTCTCCGAAATGTGTGGATTCGCAG
Reference ( family-411 ) : CGAG-GATAATCAG-TAACGCCGG-C--GAATCGGTTGTAACGCCAGATTCCGGTAATTGTAACACCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AN----TAAAACATCCCANTTTCT-TCAAATGAGCTACAATATG-----AAAA----AGATACATAGCTNGTACGAGGCACAATAAGTTTATTGA--TCGTATC-GTTTAT-CGAT-GATACCTGA-TTTTAGCTTCGTT-TTTT-AGA-TCATT----CGGG-AGAAAGTCAC--AA-GG-TTGAC-GGAAAANTGCATCGGAAGAAGTTTCGAACGNAGA----TTTTT---------------ACAA--ATCACAGGCACAT-ACTCGNATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATCACA------ATTTTG-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGTC-TTTTGAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA----T---------TTTATCCATNAATCGA-ATTGCGNATT-------------GTTTNAGACGAAGNCAGTANATCCCAACAAATACAGATGACAGCGCGNTATCAGAACATAAANNNNNNNNNNNNNNNNNNNAATGGAATTAANCAAATCATCANTGAGNACACAGCGTCACGNCATTNGAACCGTATNGATACTNCNCNGCCCCCTTCTGATTTTTTCCCCATTTATTTNGTTGCCGTTGTTGCAGTTACCGGCGATAAATTCTCCAAAATGTGTGGATTTCCAG
gi|1 : CGAG-GATAATC---TAACGCCGG-C--GAATCGGTTGTAACGCCAGATACTGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCTCACTTTGT-TCAAATGAGCTACAATATG-----AAAA----AAATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATC-GTTTAT-CGAT-GATGCCTGA-TTTTGGCTTCGTT-TTTT-AGA-TCATT----CAGA-AGAAAGACAC--AA-GT-TTGAC-AGAAAAATGCATCGGAAGAAGTTTCTTACGTAGA----TTTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATGAACTCATTTCA-TAAACAACGATTGG-AAAATCACAAATATTATTTTA-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGCC-TTTTAAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAACTTTTT-----T---------TTTATCCATGAATCAA-ATTGTACATT-------------GTTTCAGGTGAAGAC----------------CATAGATGACAGTGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATAGAATGAAATAAA-----ACTGAGAACACAGTG-CACGTTATTTA---CATATTAATACTACCCC-CCCCC--CTGATGTTTT---------TTTGGTTG-----------GTTACCGGCGAT-ATTTCTCCGAAATATGTGGATTCGCAG
gi|10 : AG-TAACGCTGGGC--GAATCAGTTGTAATGCCAGATTCCGGTAATTGTAACACCTCATTCATGGCGTTT----TACACAAG--AGAAGATAATATCGGGA------AG----AAAAATGT-TAAATTTCT-Tctagtgtatcctatccgtatctcgatttatgtgttcacacttttataag
gi|11 : TGAT-GAACAACTGCAACGAAAGAAGTTTCGAACGAAGA----TTTTTTTTTACCTATCACAGACAT--ATTATAGGCACAT-AATCATATAAAAATAAACTTAGTTCA-TAAAGAACAATTTA-AGAATCACttaagggatgataaa
gi|12 : GAG-GGTAATCAG-TAACGCCAG-C--GATTC---TG-GAC-----ATT---GTAAT---AGCACGGCGTTCACG-CGTTTGCCATATAC-----AGAAGCAGATACCATAA------AT----TAAAACAT-TCAATTTCT-
gi|13 : cactAATGGAATTAATTAAATCATCAATGAGAACACAGTA-CAAGACATTTGAA--ATATTAATACTCCTCT-CCCCCTTCTGA-TTTTTCCCCATTTTGTTGGTTACTGGTGgtt
gi|14 : aACACCGG-C--GAAACGGTTGTAACGCCGGGTTCCGGTAATTGTAACACCGCATTCA-GGCGTTT----TACGCGAG--AGAAGCAAATACCGGGA------AG----TAAAACATGCCATTTTat
gi|16 : ttGACATAC-ACTCGCATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATa
gi|17 : CGAGTGA-AATCAG-TAACGCCGG-C--GAATCGGTTGTA
gi|18 : gttcacCGTAACTTGGAA-AG-TAA--CGCCGATCAC-GGTAATTTCTTA----
gi|2 : AG-TATAATCAGGCAACACCGG-GTGGAATCGGTTGTAACGCCAGATTTCGGTCATTGTAACA--GCAATTACGGCGTTT----TACACAAG--AAA--CAGATACCGGGA------AGGGGTTAAA-----CCA---------AATTGAGCTACAATATG-----AAAAGGAAAGATACATAGTTGGTACAGAGCACAATAAGTTTATTGAATTCGTATCGGTTTATCCGATGGATACCTAACTTTTAGCTTCGTTATTTTGAGATTCATTTGAACAGGTGGAAAGTCAC--GA-GGTTTGATGGGAAAAATGCATCGGA---------------AGA----TTTTT---------------ACAA--ATCGCGGGCACATAACTCAAATATACCCGAACTCATTTCATTAAAC-ACGATTG---AAATCAC-------ATTTTGCTTGTTTCAAACAAAACAATTTTT---TACTAT-----A-TAGTCGTCGTTTTGAAGTCATTTTTCGAAGTAACA
gi|3 : GAG-GGTCATCAG-TAACGCCGG-C--GAATCGGTTATAACGCCAGATTCCGGTAATTGTAACACCGCATTAACGGCGTTT----TACACGAC--AGAAGCAGATATCGGGA------AT----TAAAACATCCCATTTCTT-TCAAATGAGCTACAATATG-----AAAA----AG-TGCATAGCTTCTACGAGGCACAATAAGTCTATTGA--TCGTATC-GTTTAT-CGAT-GATATCTGA-TTTCAGCTTCGTT-TTTG-AGA-TCATT----CAGG-AGAAAGTCAC--AA-AG-TTGAC-AGAAAAATGCATCGGAAAAAG-TTCTAACGCAGA----TTTTT---------------ACAA--ATCACAGGCACAT-AC
gi|4 : GAA-GATAATCAG-TAAAGCCGG-T--GA-----------CGCTA--------TGGTTGTTATGCCGAATTAACGGCACTT----CACGC-ATTTAGAAGCAGATACATGTATCTGTTAC----TAAAACATCC-AATTTCTCTCAAATGAGCTACAATCTGGAAAAAAAA----AAATACATAGCTAGTACGAGGCACAATACGTTTATTGA--TCGTATC-GTTTAT-CCGT-GATACCTGA-TTTT-------------T-AGA-TAATT----CGGG-AGAAAGTCATTTAATGG-TTGAT-GAAAAATTGCATCGAAAGAAGTTTCGAGCGTAGATTTTTTTTT---------------AAAAATATTACAGGCAC
gi|5 : actATAAACTCATTTCA-TAAACAACGACTGG-AAATTCACA------TTTTTG-ATG-TTCAAACAAACTGG--TTT---TACAATATATATATA-TCGTC-TTTTGAAGTCATTTTAGAAAGTAACACCCGGTAACATGGAACAG-TGA--CGCCGATCACTGGCA--TTTTTA--------------------CATACATTGACACTGTGCATT-------------
gi|6 : TT-TTTTG---TCATTTTCAAAAGTAACACCAAGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA----CATAGAAGGATTTAACCATCAATCAA-ATTAAATATT-------------GTTTCAGACGAAGACAGTAAATCCCAAC---TATAGATGACAGTGCGTTATCAGAAttag
gi|7 : TAACAT--AACAA--AATTCGC-GGTCAT-GATAATTTCTTAACGAT---------TCTATCCATGAGTCAA-ATTGCAAATTTTTCTCTAAATTCGTTTAAGACGAAGTTAGTATA------CAAATACAGATGACAACGTGATATCAGAACATAAA
gi|8 : AAACAAA-----ATTAAACAC-CAACGTCACAT-ATTA-AACCGTATGGATACTATACAGCTTC--TCTGATTTTTT-----TTTATTTGGTTGCCGTTGTTGCAGTTACCGGCGATAAATTCTCCAAAATGTGTGGATTTCCAG
gi|9 : ataaaCTTATATCA-TAAGAAA-AACTGACAGAATTAC--------TCATG-TAA-TGCAAACAAGCAGG--TTTACCTACA-------------CAT-----TGA------TTTCGAAAGTAGCACCTCAAAACATGGAACAATTAA--CG-CGATCGT-GGTAA--TATTAC---T---------TTTATTC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGCAATGATGCCCAGGTGACTGACCATTCTTACATGCATTGACATAATCTTGCATTTTCACCACAGA
Alignments
lowQualScore : 1111 11111 222222222222 1 22222 2222 11 1 1 1 1 1 1 1 2222 1 11 1 1111 555555555555555 11 11 44444444 1 1 11 111 444444444444 11 55555555555555 1 5555555555555 88888888888888888 33333 1 1 1111 22 33333 22 44444444444 11
lowQualScore : 6 5 7777 0 1 0 0 3 1 2222 11111 000000000000 1 0 6 1 6 55555 1111 3 0 33 0 0 0 0 7 0 0 0 1111 0 33 0 8 8 1 0 5 44 4 7777 000000000000000 11 8 0 6 00 77777777 0 0 0 33 777 222222222222 11 66 0 6 99 6 5 66666666666666 1 0 2 0 1 0 5555555555555 11111111111111111 0 1 33333 1 7 0 3 2 6666 1 1 00 33333 88 88888888888 66 2
lowQualScore : . . .... . . . . . . .... ..... ............ . . . . . ..... .... . . .. . . . . . . . . .... . .. . . . . . . .. . .... ............... .. . . . .. ........ . . . .. ... ............ .. .. . . .. . . .............. . . . . . . ............. ................. . . ..... . . . . . .... . . .. ..... .. ........... .. .
lowQualScore : 7 7 0000 4 4 1 7 0 4 1111 99999 333333333333 4 7 6 0 7 00000 2222 2 2 88 0 0 0 0 0 0 0 0 2222 0 88 0 0 0 0 8 6 88 0 0000 000000000000000 00 0 2 7 33 88888888 0 0 2 88 555 888888888888 22 44 2 7 22 7 7 66666666666666 0 2 0 0 2 2 0000000000000 00000000000000000 7 0 33333 0 3 7 3 0 7777 0 0 77 33333 77 22222222222 55 5
consensus : CGAG-GATAATCAG-TAACGCCGG-C--GAATCGGTTGTAACGCCAGATTCCGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCCCANTTTCT-TCAAATGAGCTACAATATG-----AAAA----AGATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATCG-TTTATC-GATG-ATACCTGA-TTTTAGCTTCGTT-TTTT-AGAT-CATT----CAGG-AGAAAGTCAC--AA-GGTT-GACGG-AAAAATGCATCGGAAGAAGTTTCNAACGTAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATCACAA------TTTTG-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGTC-TTTTGAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA----T---------TTTATCCATGAATCGA-ATTGTACATT-------------GTTTCAGACGAAGACAGT-------A-AC---TATAGATGACAGCGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATGGAATNAAATAAA-----ANTGAGAACACAGCG-CACGTCATTTGAACATATTAATACTACNCNCCCCC-TCTGATTTTT-----TTTT--TTGGTTGCCGTTGTTGCAGTTACCGGCGATAANTTCTCCGAAATGTGTGGATTCGCAG
Reference ( family-411 ) : CGAG-GATAATCAG-TAACGCCGG-C--GAATCGGTTGTAACGCCAGATTCCGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCCCANTTTCT-TCAAATGAGCTACAATATG-----AAAA----AGATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATCG-TTTATC-GATG-ATACCTGA-TTTTAGCTTCGTT-TTTT-AGAT-CATT----CAGG-AGAAAGTCAC--AA-GGTT-GACGG-AAAAATGCATCGGAAGAAGTTTCNAACGTAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATCACAA------TTTTG-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGTC-TTTTGAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA----T---------TTTATCCATGAATCGA-ATTGTACATT-------------GTTTCAGACGAAGACAGT-------A-AC---TATAGATGACAGCGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATGGAATNAAATAAA-----ANTGAGAACACAGCG-CACGTCATTTGAACATATTAATACTACNCNCCCCC-TCTGATTTTT-----TTTT-TTTGGTTGCCGT-GTTGCAGTTACCGGCGATAANTTCTCCGAAATGTGTGGATTCGCAG
gi|1 : CGAG-GATAATC---TAACGCCGG-C--GAATCGGTTGTAACGCCAGATACTGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCTCACTTTGT-TCAAATGAGCTACAATATG-----AAAA----AAATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATCG-TTTATC-GATG-ATGCCTGA-TTTTGGCTTCGTT-TTTT-AGAT-CATT----CAGA-AGAAAGACAC--AA-GTTT-GACAG-AAAAATGCATCGGAAGAAGTTTCTTACGTAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATGAACTCATTTCA-TAAACAACGATTGG-AAAATCACAAATATTATTTTA-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGCC-TTTTAAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAACTTTTT-----T---------TTTATCCATGAATCAA-ATTGTACATT-------------GTTTCAGGTGAAGAC-----------------CATAGATGACAGTGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATAGAATGAAATAAA-----ACTGAGAACACAGTG-CACGTTATTT--ACATATTAATACTACCCCCCCCC--CTGATGTTT-----TTTT----GGTTG-----------GTTACCGGCGATA-TTTCTCCGAAATATGTGGATTCGCAG
gi|10 : AG-TAACGCTGGGC--GAATCAGTTGTAATGCCAGATTCCGGTAATTGTAACACCTCATTCATGGCGTTT----TACACAAG--AGAAGATAATATCGGGA------AG----AAAAATGT-TAAATTTCT-Tctagtgtatcctatccgtatctcgatttatgtgttcacacttttataag
gi|11 : T-GATGA-ACAACTGCAACGAAAGAAGTTTCGAACGAAGAT----TTTTTTTTACCTATCACAGACAT--ATTATAGGCACAT-AATCATATAAAAATAAACTTAGTTCA-TAAAGAACAATTTA-AGAATCACttaagggatgataaa
gi|12 : GAG-GGTAATCAG-TAACGCCAG-C--GATTC---TG-GAC-----ATT---GTAAT---AGCACGGCGTTCACG-CGTTTGCCATATAC-----AGAAGCAGATACCATAA------AT----TAAAACAT-TCAATTTCT-
gi|13 : cactAATGGAATTAATTAAATCATCAATGAGAACACAGTA-CAAGACATTTGAA-ATATTAATACTCCTCTCCCCCTTCTGATTTTTCCCCATTTT-GTTGGTTACTGgtt
gi|14 : aACACCGG-C--GAAACGGTTGTAACGCCGGGTTCCGGTAATTGTAACACCGCATTCA-GGCGTTT----TACGCGAG--AGAAGCAAATACCGGGA------AG----TAAAACATGCCATTTTgtgat
gi|16 : ttGACATAC-ACTCGCATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATa
gi|17 : CGAGTGA-AATCAG-TAACGCCGG-C--GAATCGGTTGTA
gi|18 : gttcacCGTAACTTGGAA-AG-TAA--CGCCGATCAC-GGTAATTTCTTA----
gi|2 : AG-TATAATCAGGCAACACCGG-GTGGAATCGGTTGTAACGCCAGATTTCGGTCATTGTAACA--GCAATTACGGCGTTT----TACACAAG--AAA--CAGATACCGGGA------AGGGGTTAAA-----CCA---------AATTGAGCTACAATATG-----AAAAGGAAAGATACATAGTTGGTACAGAGCACAATAAGTTTATTGAATTCGTATCGGTTTATCCGATGGATACCTAACTTTTAGCTTCGTTATTTTGAGATTCATTTGAACAGGTGGAAAGTCAC--GA-GGTTTGATGGGAAAAATGCATCGGAAGA---------------T----TTTT---------------ACAA--ATCGCGGGCACATAACTCAAATATACCCGAACTCATTTCATTAAAC-ACGATTG---AAATCAC-A------TTTTGCTTGTTTCAAACAAAACAATTTTT---TACTAT-----A-TAGTCGTCGTTTTGAAGTCATTTTTCGAAGTAACA
gi|3 : GAG-GGTCATCAG-TAACGCCGG-C--GAATCGGTTATAACGCCAGATTCCGGTAATTGTAACACCGCATTAACGGCGTTT----TACACGAC--AGAAGCAGATATCGGGA------AT----TAAAACATCCCATTTCTT-TCAAATGAGCTACAATATG-----AAAA----AG-TGCATAGCTTCTACGAGGCACAATAAGTCTATTGA--TCGTATCG-TTTATC-GATG-ATATCTGA-TTTCAGCTTCGTT-TTTG-AGAT-CATT----CAGG-AGAAAGTCAC--AA-AGTT-GACAG-AAAAATGCATCGGAAAAAG-TTCTAACGCAGAT----TTTT---------------ACAA--ATCACAGGCACAT-AC
gi|4 : GAA-GATAATCAG-TAAAGCCGG-T--GA-----------CGCTA--------TGGTTGTTATGCCGAATTAACGGCACTT----CACGC-ATTTAGAAGCAGATACATGTATCTGTTAC----TAAAACATCC-AATTTCTCTCAAATGAGCTACAATCTGGAAAAAAAA----AAATACATAGCTAGTACGAGGCACAATACGTTTATTGA--TCGTATCG-TTTATC-CGTG-ATACCTGA-TTTT-------------T-AGAT-AATT----CGGG-AGAAAGTCATTTAATGGTT-GATGA-AAAATTGCATCGAAAGAAGTTTCGAGCGTAGATTTTTTTTT---------------AAAAATATTACAGGCAC
gi|5 : actATAAACTCATTTCA-TAAACAACGACTGG-AAATTCACAT------TTTTG-ATG-TTCAAACAAACTGG--TTT---TACAATATATATATA-TCGTC-TTTTGAAGTCATTTTAGAAAGTAACACCCGGTAACATGGAACAG-TGA--CGCCGATCACTGGCA--TTTTTA--------------------CATACATTGACACTGTGCATT-------------
gi|6 : TT-TTTTG---TCATTTTCAAAAGTAACACCAAGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA----CATAGAAGGATTTAACCATCAATCAA-ATTAAATATT-------------GTTTCAGACGAAGACAGTAAATCCCA-AC---TATAGATGACAGTGCGTTATCAGAAttag
gi|7 : TAACAT--AACAA--AATTCGC-GGTCAT-GATAATTTCTTAACGAT---------TCTATCCATGAGTCAA-ATTGCAAATTTTTCTCTAAATTCGTTTAAGACGAAGTTAGT-------ATACAAATACAGATGACAACGTGATATCAGAACATAAA
gi|8 : AAACAAA-----ATTAAACAC-CAACGTCACAT-ATTAAACCGTATGGATACTATACAGCTTC-TCTGATTTTT-----TTTTATTTGGTTGCCGTTGTTGCAGTTACCGGCGATAAATTCTCCAAAATGTGTGGATTTCCAG
gi|9 : ataaaCTTATATCA-TAAGAAA-AACTGACAGAATTAC--------TCATG-TAA-TGCAAACAAGCAGG--TTTACCTACA-------------CAT-----TGA------TTTCGAAAGTAGCACCTCAAAACATGGAACAATTAA--CG-CGATCGT-GGTAA--TATTAC---T---------TTTATTC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGCAATGATGCCCAGGTGACTGACCATTCTTACATGCATTGACATAATCTTGCATTTTCACCACAGA
Alignments
lowQualScore : 1111 11111 222222222222 1 22222 2222 11 1 1 1 1 1 1 1 2222 1 11 1 1111 555555555555555 11 11 44444444 1 1 11 111 444444444444 11 55555555555555 1 5555555555555 88888888888888888 33333 1 1 1111 22 33333 333 22222222222 11
lowQualScore : 6 5 7777 0 1 0 0 3 1 2222 11111 000000000000 1 0 6 1 6 55555 1111 3 0 33 0 0 0 0 7 0 0 0 1111 0 33 0 8 8 1 0 5 44 4 7777 000000000000000 11 8 0 6 00 77777777 0 0 0 33 777 222222222222 11 66 0 6 99 6 5 66666666666666 1 0 2 0 1 0 5555555555555 11111111111111111 0 1 33333 1 7 0 3 2 6666 1 1 00 33333 999 77777777777 66 2
lowQualScore : . . .... . . . . . . .... ..... ............ . . . . . ..... .... . . .. . . . . . . . . .... . .. . . . . . . .. . .... ............... .. . . . .. ........ . . . .. ... ............ .. .. . . .. . . .............. . . . . . . ............. ................. . . ..... . . . . . .... . . .. ..... ... ........... .. .
lowQualScore : 7 7 0000 4 4 1 7 0 4 1111 99999 333333333333 4 7 6 0 7 00000 2222 2 2 88 0 0 0 0 0 0 0 0 2222 0 88 0 0 0 0 8 6 88 0 0000 000000000000000 00 0 2 7 33 88888888 0 0 2 88 555 888888888888 22 44 2 7 22 7 7 66666666666666 0 2 0 0 2 2 0000000000000 00000000000000000 7 0 33333 0 3 7 3 0 7777 0 0 77 33333 000 00000000000 55 5
consensus : CGAG-GATAATCAG-TAACGCCGG-C--GAATCGGTTGTAACGCCAGATTCCGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCCCANTTTCT-TCAAATGAGCTACAATATG-----AAAA----AGATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATCG-TTTATC-GATG-ATACCTGA-TTTTAGCTTCGTT-TTTT-AGAT-CATT----CAGG-AGAAAGTCAC--AA-GGTT-GACGG-AAAAATGCATCGGAAGAAGTTTCNAACGTAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATCACAA------TTTTG-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGTC-TTTTGAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA----T---------TTTATCCATGAATCGA-ATTGTACATT-------------GTTTCAGACGAAGACAGT-------A-AC---TATAGATGACAGCGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATGGAATNAAATAAA-----ANTGAGAACACAGCG-CACGTCATTTGAACATATTAATACTACNCNCCCCC-TCTGATTTTT-----TTTTG-TTGGTTGCCG-TGTTGCAGTTACCGGCGATAANTTCTCCGAAATGTGTGGATTCGCAG
Reference ( family-411 ) : CGAG-GATAATCAG-TAACGCCGG-C--GAATCGGTTGTAACGCCAGATTCCGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCCCANTTTCT-TCAAATGAGCTACAATATG-----AAAA----AGATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATCG-TTTATC-GATG-ATACCTGA-TTTTAGCTTCGTT-TTTT-AGAT-CATT----CAGG-AGAAAGTCAC--AA-GGTT-GACGG-AAAAATGCATCGGAAGAAGTTTCNAACGTAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATCACAA------TTTTG-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGTC-TTTTGAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA----T---------TTTATCCATGAATCGA-ATTGTACATT-------------GTTTCAGACGAAGACAGT-------A-AC---TATAGATGACAGCGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATGGAATNAAATAAA-----ANTGAGAACACAGCG-CACGTCATTTGAACATATTAATACTACNCNCCCCC-TCTGATTTTT-----TTTT--TTGGTTGCCGTTGTTGCAGTTACCGGCGATAANTTCTCCGAAATGTGTGGATTCGCAG
gi|1 : CGAG-GATAATC---TAACGCCGG-C--GAATCGGTTGTAACGCCAGATACTGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCTCACTTTGT-TCAAATGAGCTACAATATG-----AAAA----AAATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATCG-TTTATC-GATG-ATGCCTGA-TTTTGGCTTCGTT-TTTT-AGAT-CATT----CAGA-AGAAAGACAC--AA-GTTT-GACAG-AAAAATGCATCGGAAGAAGTTTCTTACGTAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATGAACTCATTTCA-TAAACAACGATTGG-AAAATCACAAATATTATTTTA-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGCC-TTTTAAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAACTTTTT-----T---------TTTATCCATGAATCAA-ATTGTACATT-------------GTTTCAGGTGAAGAC-----------------CATAGATGACAGTGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATAGAATGAAATAAA-----ACTGAGAACACAGTG-CACGTTATTT--ACATATTAATACTACCCCCCCCC--CTGATGTTT-----TTTT----GGTTG-----------GTTACCGGCGATA-TTTCTCCGAAATATGTGGATTCGCAG
gi|10 : AG-TAACGCTGGGC--GAATCAGTTGTAATGCCAGATTCCGGTAATTGTAACACCTCATTCATGGCGTTT----TACACAAG--AGAAGATAATATCGGGA------AG----AAAAATGT-TAAATTTCT-Tctagtgtatcctatccgtatctcgatttatgtgttcacacttttataag
gi|11 : T-GATGA-ACAACTGCAACGAAAGAAGTTTCGAACGAAGAT----TTTTTTTTACCTATCACAGACAT--ATTATAGGCACAT-AATCATATAAAAATAAACTTAGTTCA-TAAAGAACAATTTA-AGAATCACttaagggatgataaa
gi|12 : GAG-GGTAATCAG-TAACGCCAG-C--GATTC---TG-GAC-----ATT---GTAAT---AGCACGGCGTTCACG-CGTTTGCCATATAC-----AGAAGCAGATACCATAA------AT----TAAAACAT-TCAATTTCT-
gi|13 : cactAATGGAATTAATTAAATCATCAATGAGAACACAGTA-CAAGACATTTGAA-ATATTAATACTCCTCTCCCCCTTCTGATTTTTCCCCATTTTG-TTGGTTACTGGTGgtt
gi|14 : aACACCGG-C--GAAACGGTTGTAACGCCGGGTTCCGGTAATTGTAACACCGCATTCA-GGCGTTT----TACGCGAG--AGAAGCAAATACCGGGA------AG----TAAAACATGCCATTTTat
gi|16 : ttGACATAC-ACTCGCATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATa
gi|17 : CGAGTGA-AATCAG-TAACGCCGG-C--GAATCGGTTGTA
gi|18 : gttcacCGTAACTTGGAA-AG-TAA--CGCCGATCAC-GGTAATTTCTTA----
gi|2 : AG-TATAATCAGGCAACACCGG-GTGGAATCGGTTGTAACGCCAGATTTCGGTCATTGTAACA--GCAATTACGGCGTTT----TACACAAG--AAA--CAGATACCGGGA------AGGGGTTAAA-----CCA---------AATTGAGCTACAATATG-----AAAAGGAAAGATACATAGTTGGTACAGAGCACAATAAGTTTATTGAATTCGTATCGGTTTATCCGATGGATACCTAACTTTTAGCTTCGTTATTTTGAGATTCATTTGAACAGGTGGAAAGTCAC--GA-GGTTTGATGGGAAAAATGCATCGGAAGA---------------T----TTTT---------------ACAA--ATCGCGGGCACATAACTCAAATATACCCGAACTCATTTCATTAAAC-ACGATTG---AAATCAC-A------TTTTGCTTGTTTCAAACAAAACAATTTTT---TACTAT-----A-TAGTCGTCGTTTTGAAGTCATTTTTCGAAGTAACA
gi|3 : GAG-GGTCATCAG-TAACGCCGG-C--GAATCGGTTATAACGCCAGATTCCGGTAATTGTAACACCGCATTAACGGCGTTT----TACACGAC--AGAAGCAGATATCGGGA------AT----TAAAACATCCCATTTCTT-TCAAATGAGCTACAATATG-----AAAA----AG-TGCATAGCTTCTACGAGGCACAATAAGTCTATTGA--TCGTATCG-TTTATC-GATG-ATATCTGA-TTTCAGCTTCGTT-TTTG-AGAT-CATT----CAGG-AGAAAGTCAC--AA-AGTT-GACAG-AAAAATGCATCGGAAAAAG-TTCTAACGCAGAT----TTTT---------------ACAA--ATCACAGGCACAT-AC
gi|4 : GAA-GATAATCAG-TAAAGCCGG-T--GA-----------CGCTA--------TGGTTGTTATGCCGAATTAACGGCACTT----CACGC-ATTTAGAAGCAGATACATGTATCTGTTAC----TAAAACATCC-AATTTCTCTCAAATGAGCTACAATCTGGAAAAAAAA----AAATACATAGCTAGTACGAGGCACAATACGTTTATTGA--TCGTATCG-TTTATC-CGTG-ATACCTGA-TTTT-------------T-AGAT-AATT----CGGG-AGAAAGTCATTTAATGGTT-GATGA-AAAATTGCATCGAAAGAAGTTTCGAGCGTAGATTTTTTTTT---------------AAAAATATTACAGGCAC
gi|5 : actATAAACTCATTTCA-TAAACAACGACTGG-AAATTCACAT------TTTTG-ATG-TTCAAACAAACTGG--TTT---TACAATATATATATA-TCGTC-TTTTGAAGTCATTTTAGAAAGTAACACCCGGTAACATGGAACAG-TGA--CGCCGATCACTGGCA--TTTTTA--------------------CATACATTGACACTGTGCATT-------------
gi|6 : TT-TTTTG---TCATTTTCAAAAGTAACACCAAGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA----CATAGAAGGATTTAACCATCAATCAA-ATTAAATATT-------------GTTTCAGACGAAGACAGTAAATCCCA-AC---TATAGATGACAGTGCGTTATCAGAAttag
gi|7 : TAACAT--AACAA--AATTCGC-GGTCAT-GATAATTTCTTAACGAT---------TCTATCCATGAGTCAA-ATTGCAAATTTTTCTCTAAATTCGTTTAAGACGAAGTTAGT-------ATACAAATACAGATGACAACGTGATATCAGAACATAAA
gi|8 : AAACAAA-----ATTAAACAC-CAACGTCACAT-ATTAAACCGTATGGATACTATACAGCTTC-TCTGATTTTT-----TTTTATTTGGTTGCCGTTGTTGCAGTTACCGGCGATAAATTCTCCAAAATGTGTGGATTTCCAG
gi|9 : ataaaCTTATATCA-TAAGAAA-AACTGACAGAATTAC--------TCATG-TAA-TGCAAACAAGCAGG--TTTACCTACA-------------CAT-----TGA------TTTCGAAAGTAGCACCTCAAAACATGGAACAATTAA--CG-CGATCGT-GGTAA--TATTAC---T---------TTTATTC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGCAATGATGCCCAGGTGACTGACCATTCTTACATGCATTGACATAATCTTGCATTTTCACCACAGA
Alignments
lowQualScore : 1111 11111 222222222222 1 22222 2222 11 1 1 1 1 1 1 1 2222 1 11 1 1111 555555555555555 11 11 44444444 1 1 11 111 444444444444 11 55555555555555 1 5555555555555 88888888888888888 33333 1 1 1111 22 33333 4444444444444 11 11
lowQualScore : 6 5 7777 0 1 0 0 3 1 2222 11111 000000000000 1 0 6 1 6 55555 1111 3 0 33 0 0 0 0 7 0 0 0 1111 0 33 0 8 8 1 0 5 44 4 7777 000000000000000 11 8 0 6 00 77777777 0 0 0 33 777 222222222222 11 66 0 6 99 6 5 66666666666666 1 0 2 0 1 0 5555555555555 11111111111111111 0 1 33333 1 7 0 3 2 6666 1 1 00 33333 1111111111111 88 66 2
lowQualScore : . . .... . . . . . . .... ..... ............ . . . . . ..... .... . . .. . . . . . . . . .... . .. . . . . . . .. . .... ............... .. . . . .. ........ . . . .. ... ............ .. .. . . .. . . .............. . . . . . . ............. ................. . . ..... . . . . . .... . . .. ..... ............. .. .. .
lowQualScore : 7 7 0000 4 4 1 7 0 4 1111 99999 333333333333 4 7 6 0 7 00000 2222 2 2 88 0 0 0 0 0 0 0 0 2222 0 88 0 0 0 0 8 6 88 0 0000 000000000000000 00 0 2 7 33 88888888 0 0 2 88 555 888888888888 22 44 2 7 22 7 7 66666666666666 0 2 0 0 2 2 0000000000000 00000000000000000 7 0 33333 0 3 7 3 0 7777 0 0 77 33333 3333333333333 00 55 5
consensus : CGAG-GATAATCAG-TAACGCCGG-C--GAATCGGTTGTAACGCCAGATTCCGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCCCANTTTCT-TCAAATGAGCTACAATATG-----AAAA----AGATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATCG-TTTATC-GATG-ATACCTGA-TTTTAGCTTCGTT-TTTT-AGAT-CATT----CAGG-AGAAAGTCAC--AA-GGTT-GACGG-AAAAATGCATCGGAAGAAGTTTCNAACGTAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATCACAA------TTTTG-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGTC-TTTTGAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA----T---------TTTATCCATGAATCGA-ATTGTACATT-------------GTTTCAGACGAAGACAGT-------A-AC---TATAGATGACAGCGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATGGAATNAAATAAA-----ANTGAGAACACAGCG-CACGTCATTTGAACATATTAATACTACNCNCCCCC-TCTGATTTTT-----TTTTGTT-GGTTGCCGTTGTTGCAGTTACCGGCGATAANTTCTCCGAAATGTGTGGATTCGCAG
Reference ( family-411 ) : CGAG-GATAATCAG-TAACGCCGG-C--GAATCGGTTGTAACGCCAGATTCCGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCCCANTTTCT-TCAAATGAGCTACAATATG-----AAAA----AGATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATCG-TTTATC-GATG-ATACCTGA-TTTTAGCTTCGTT-TTTT-AGAT-CATT----CAGG-AGAAAGTCAC--AA-GGTT-GACGG-AAAAATGCATCGGAAGAAGTTTCNAACGTAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATCACAA------TTTTG-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGTC-TTTTGAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA----T---------TTTATCCATGAATCGA-ATTGTACATT-------------GTTTCAGACGAAGACAGT-------A-AC---TATAGATGACAGCGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATGGAATNAAATAAA-----ANTGAGAACACAGCG-CACGTCATTTGAACATATTAATACTACNCNCCCCC-TCTGATTTTT-----TTTTGTT-GGTTGCCGT-GTTGCAGTTACCGGCGATAANTTCTCCGAAATGTGTGGATTCGCAG
gi|1 : CGAG-GATAATC---TAACGCCGG-C--GAATCGGTTGTAACGCCAGATACTGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCTCACTTTGT-TCAAATGAGCTACAATATG-----AAAA----AAATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATCG-TTTATC-GATG-ATGCCTGA-TTTTGGCTTCGTT-TTTT-AGAT-CATT----CAGA-AGAAAGACAC--AA-GTTT-GACAG-AAAAATGCATCGGAAGAAGTTTCTTACGTAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATGAACTCATTTCA-TAAACAACGATTGG-AAAATCACAAATATTATTTTA-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGCC-TTTTAAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAACTTTTT-----T---------TTTATCCATGAATCAA-ATTGTACATT-------------GTTTCAGGTGAAGAC-----------------CATAGATGACAGTGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATAGAATGAAATAAA-----ACTGAGAACACAGTG-CACGTTATTT--ACATATTAATACTACCCCCCCCC--CTGATGTTT-----TTTTG-------------GTTG--GTTACCGGCGATA-TTTCTCCGAAATATGTGGATTCGCAG
gi|10 : AG-TAACGCTGGGC--GAATCAGTTGTAATGCCAGATTCCGGTAATTGTAACACCTCATTCATGGCGTTT----TACACAAG--AGAAGATAATATCGGGA------AG----AAAAATGT-TAAATTTCT-Tctagtgtatcctatccgtatctcgatttatgtgttcacacttttataag
gi|11 : T-GATGA-ACAACTGCAACGAAAGAAGTTTCGAACGAAGAT----TTTTTTTTACCTATCACAGACAT--ATTATAGGCACAT-AATCATATAAAAATAAACTTAGTTCA-TAAAGAACAATTTA-AGAATCACttaagggatgataaa
gi|12 : GAG-GGTAATCAG-TAACGCCAG-C--GATTC---TG-GAC-----ATT---GTAAT---AGCACGGCGTTCACG-CGTTTGCCATATAC-----AGAAGCAGATACCATAA------AT----TAAAACAT-TCAATTTCT-
gi|13 : cactAATGGAATTAATTAAATCATCAATGAGAACACAGTA-CAAGACATTTGAA-ATATTAATACTCCTCTCCCCCTTCTGATTTTTCCCCATTTTGTT-GGTTACTGgtt
gi|14 : aACACCGG-C--GAAACGGTTGTAACGCCGGGTTCCGGTAATTGTAACACCGCATTCA-GGCGTTT----TACGCGAG--AGAAGCAAATACCGGGA------AG----TAAAACATGCCATTTTgtgat
gi|16 : ttGACATAC-ACTCGCATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATa
gi|17 : CGAGTGA-AATCAG-TAACGCCGG-C--GAATCGGTTGTA
gi|18 : gttcacCGTAACTTGGAA-AG-TAA--CGCCGATCAC-GGTAATTTCTTA----
gi|2 : AG-TATAATCAGGCAACACCGG-GTGGAATCGGTTGTAACGCCAGATTTCGGTCATTGTAACA--GCAATTACGGCGTTT----TACACAAG--AAA--CAGATACCGGGA------AGGGGTTAAA-----CCA---------AATTGAGCTACAATATG-----AAAAGGAAAGATACATAGTTGGTACAGAGCACAATAAGTTTATTGAATTCGTATCGGTTTATCCGATGGATACCTAACTTTTAGCTTCGTTATTTTGAGATTCATTTGAACAGGTGGAAAGTCAC--GA-GGTTTGATGGGAAAAATGCATCGGAAGA---------------T----TTTT---------------ACAA--ATCGCGGGCACATAACTCAAATATACCCGAACTCATTTCATTAAAC-ACGATTG---AAATCAC-A------TTTTGCTTGTTTCAAACAAAACAATTTTT---TACTAT-----A-TAGTCGTCGTTTTGAAGTCATTTTTCGAAGTAACA
gi|3 : GAG-GGTCATCAG-TAACGCCGG-C--GAATCGGTTATAACGCCAGATTCCGGTAATTGTAACACCGCATTAACGGCGTTT----TACACGAC--AGAAGCAGATATCGGGA------AT----TAAAACATCCCATTTCTT-TCAAATGAGCTACAATATG-----AAAA----AG-TGCATAGCTTCTACGAGGCACAATAAGTCTATTGA--TCGTATCG-TTTATC-GATG-ATATCTGA-TTTCAGCTTCGTT-TTTG-AGAT-CATT----CAGG-AGAAAGTCAC--AA-AGTT-GACAG-AAAAATGCATCGGAAAAAG-TTCTAACGCAGAT----TTTT---------------ACAA--ATCACAGGCACAT-AC
gi|4 : GAA-GATAATCAG-TAAAGCCGG-T--GA-----------CGCTA--------TGGTTGTTATGCCGAATTAACGGCACTT----CACGC-ATTTAGAAGCAGATACATGTATCTGTTAC----TAAAACATCC-AATTTCTCTCAAATGAGCTACAATCTGGAAAAAAAA----AAATACATAGCTAGTACGAGGCACAATACGTTTATTGA--TCGTATCG-TTTATC-CGTG-ATACCTGA-TTTT-------------T-AGAT-AATT----CGGG-AGAAAGTCATTTAATGGTT-GATGA-AAAATTGCATCGAAAGAAGTTTCGAGCGTAGATTTTTTTTT---------------AAAAATATTACAGGCAC
gi|5 : actATAAACTCATTTCA-TAAACAACGACTGG-AAATTCACAT------TTTTG-ATG-TTCAAACAAACTGG--TTT---TACAATATATATATA-TCGTC-TTTTGAAGTCATTTTAGAAAGTAACACCCGGTAACATGGAACAG-TGA--CGCCGATCACTGGCA--TTTTTA--------------------CATACATTGACACTGTGCATT-------------
gi|6 : TT-TTTTG---TCATTTTCAAAAGTAACACCAAGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA----CATAGAAGGATTTAACCATCAATCAA-ATTAAATATT-------------GTTTCAGACGAAGACAGTAAATCCCA-AC---TATAGATGACAGTGCGTTATCAGAAttag
gi|7 : TAACAT--AACAA--AATTCGC-GGTCAT-GATAATTTCTTAACGAT---------TCTATCCATGAGTCAA-ATTGCAAATTTTTCTCTAAATTCGTTTAAGACGAAGTTAGT-------ATACAAATACAGATGACAACGTGATATCAGAACATAAA
gi|8 : AAACAAA-----ATTAAACAC-CAACGTCACAT-ATTAAACCGTATGGATACTATACAGCTTC-TCTGATTTTT-----TTTTATTTGGTTGCCGTTGTTGCAGTTACCGGCGATAAATTCTCCAAAATGTGTGGATTTCCAG
gi|9 : ataaaCTTATATCA-TAAGAAA-AACTGACAGAATTAC--------TCATG-TAA-TGCAAACAAGCAGG--TTTACCTACA-------------CAT-----TGA------TTTCGAAAGTAGCACCTCAAAACATGGAACAATTAA--CG-CGATCGT-GGTAA--TATTAC---T---------TTTATTC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGCAATGATGCCCAGGTGACTGACCATTCTTACATGCATTGACATAATCTTGCATTTTCACCACAGA
Alignments
lowQualScore : 1111 11111 222222222222 1 22222 2222 11 1 1 1 1 1 1 1 2222 1 11 1111 1111 555555555555555 11 11 44444444 1 1 11 111 444444444444 11 55555555555555 1 5555555555555 88888888888888888 33333 1 1 1111 22 33333 222222222222 11 11
lowQualScore : 6 5 7777 0 1 0 0 3 1 2222 11111 000000000000 1 0 6 1 6 55555 1111 3 0 33 0 0 0 0 7 0 0 0 1111 0 33 0000 8 1 0 5 44 4 7777 000000000000000 11 8 0 6 00 77777777 0 0 0 33 777 222222222222 11 66 0 6 99 6 5 66666666666666 1 0 2 0 1 0 5555555555555 11111111111111111 0 1 33333 1 7 0 3 2 6666 1 1 00 33333 555555555555 88 66 2
lowQualScore : . . .... . . . . . . .... ..... ............ . . . . . ..... .... . . .. . . . . . . . . .... . .. .... . . . . .. . .... ............... .. . . . .. ........ . . . .. ... ............ .. .. . . .. . . .............. . . . . . . ............. ................. . . ..... . . . . . .... . . .. ..... ............ .. .. .
lowQualScore : 7 7 0000 4 4 1 7 0 4 1111 99999 333333333333 4 7 6 0 7 00000 2222 2 2 88 0 0 0 0 0 0 0 0 2222 0 88 2222 0 0 8 6 88 0 0000 000000000000000 00 0 2 7 33 88888888 0 0 2 88 555 888888888888 22 44 2 7 22 7 7 66666666666666 0 2 0 0 2 2 0000000000000 00000000000000000 7 0 33333 0 3 7 3 0 7777 0 0 77 33333 333333333333 00 55 5
consensus : CGAG-GATAATCAG-TAACGCCGG-C--GAATCGGTTGTAACGCCAGATTCCGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCCCANTTTCT-TCAAATGAGCTACAATATG-----AAAA----AGATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATC-GTTTAT-CGAT-GATACCTGA-TTTTAGCTTCGTT-TTTT-AGA-TCATT----CAGG-AGAAAGTCAC--AA-GG-TTGAC-GGAAAAATGCATCGGAAGAAGTTTCNAACGTAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATCACAA------TTTTG-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGTC-TTTTGAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA----T---------TTTATCCATGAATCGA-ATTGTACATT-------------GTTTCAGACGAAGACAGT-------A-AC---TATAGATGACAGCGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATGGAATNAAATAAA-----ANTGAGAACACAGCG-CACGTCATTTGAACATATTAATACTACNCNCCCCC-TCTGATTTTT-----TTTTGTT-GGTTGCCG-TGTTGCAGTTACCGGCGATAANTTCTCCGAAATGTGTGGATTCGCAG
Reference ( family-411 ) : CGAG-GATAATCAG-TAACGCCGG-C--GAATCGGTTGTAACGCCAGATTCCGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCCCANTTTCT-TCAAATGAGCTACAATATG-----AAAA----AGATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATC-GTTTAT-CGAT-GATACCTGA-TTTTAGCTTCGTT-TTTT-AGA-TCATT----CAGG-AGAAAGTCAC--AA-GG-TTGAC-GGAAAAATGCATCGGAAGAAGTTTCNAACGTAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATCACAA------TTTTG-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGTC-TTTTGAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA----T---------TTTATCCATGAATCGA-ATTGTACATT-------------GTTTCAGACGAAGACAGT-------A-AC---TATAGATGACAGCGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATGGAATNAAATAAA-----ANTGAGAACACAGCG-CACGTCATTTGAACATATTAATACTACNCNCCCCC-TCTGATTTTT-----TTTTGTT-GGTTGCCGTTGTTGCAGTTACCGGCGATAANTTCTCCGAAATGTGTGGATTCGCAG
gi|1 : CGAG-GATAATC---TAACGCCGG-C--GAATCGGTTGTAACGCCAGATACTGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCTCACTTTGT-TCAAATGAGCTACAATATG-----AAAA----AAATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATC-GTTTAT-CGAT-GATGCCTGA-TTTTGGCTTCGTT-TTTT-AGA-TCATT----CAGA-AGAAAGACAC--AA-GT-TTGAC-AGAAAAATGCATCGGAAGAAGTTTCTTACGTAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATGAACTCATTTCA-TAAACAACGATTGG-AAAATCACAAATATTATTTTA-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGCC-TTTTAAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAACTTTTT-----T---------TTTATCCATGAATCAA-ATTGTACATT-------------GTTTCAGGTGAAGAC-----------------CATAGATGACAGTGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATAGAATGAAATAAA-----ACTGAGAACACAGTG-CACGTTATTT--ACATATTAATACTACCCCCCCCC--CTGATGTTT-----TTTTG-------------GTTG--GTTACCGGCGATA-TTTCTCCGAAATATGTGGATTCGCAG
gi|10 : AG-TAACGCTGGGC--GAATCAGTTGTAATGCCAGATTCCGGTAATTGTAACACCTCATTCATGGCGTTT----TACACAAG--AGAAGATAATATCGGGA------AG----AAAAATGT-TAAATTTCT-Tctagtgtatcctatccgtatctcgatttatgtgttcacacttttataag
gi|11 : TGAT-GAACAACTGCAACGAAAGAAGTTTCGAACGAAGAT----TTTTTTTTACCTATCACAGACAT--ATTATAGGCACAT-AATCATATAAAAATAAACTTAGTTCA-TAAAGAACAATTTA-AGAATCACttaagggatgataaa
gi|12 : GAG-GGTAATCAG-TAACGCCAG-C--GATTC---TG-GAC-----ATT---GTAAT---AGCACGGCGTTCACG-CGTTTGCCATATAC-----AGAAGCAGATACCATAA------AT----TAAAACAT-TCAATTTCT-
gi|13 : cactAATGGAATTAATTAAATCATCAATGAGAACACAGTA-CAAGACATTTGAA-ATATTAATACTCCTCTCCCCCTTCTGATTTTTCCCCATTTTGTT-GGTTACTGGTGgtt
gi|14 : aACACCGG-C--GAAACGGTTGTAACGCCGGGTTCCGGTAATTGTAACACCGCATTCA-GGCGTTT----TACGCGAG--AGAAGCAAATACCGGGA------AG----TAAAACATGCCATTTTat
gi|16 : ttGACATAC-ACTCGCATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATa
gi|17 : CGAGTGA-AATCAG-TAACGCCGG-C--GAATCGGTTGTA
gi|18 : gttcacCGTAACTTGGAA-AG-TAA--CGCCGATCAC-GGTAATTTCTTA----
gi|2 : AG-TATAATCAGGCAACACCGG-GTGGAATCGGTTGTAACGCCAGATTTCGGTCATTGTAACA--GCAATTACGGCGTTT----TACACAAG--AAA--CAGATACCGGGA------AGGGGTTAAA-----CCA---------AATTGAGCTACAATATG-----AAAAGGAAAGATACATAGTTGGTACAGAGCACAATAAGTTTATTGAATTCGTATCGGTTTATCCGATGGATACCTAACTTTTAGCTTCGTTATTTTGAGATTCATTTGAACAGGTGGAAAGTCAC--GA-GGTTTGATGGGAAAAATGCATCGGA---------------AGAT----TTTT---------------ACAA--ATCGCGGGCACATAACTCAAATATACCCGAACTCATTTCATTAAAC-ACGATTG---AAATCAC-A------TTTTGCTTGTTTCAAACAAAACAATTTTT---TACTAT-----A-TAGTCGTCGTTTTGAAGTCATTTTTCGAAGTAACA
gi|3 : GAG-GGTCATCAG-TAACGCCGG-C--GAATCGGTTATAACGCCAGATTCCGGTAATTGTAACACCGCATTAACGGCGTTT----TACACGAC--AGAAGCAGATATCGGGA------AT----TAAAACATCCCATTTCTT-TCAAATGAGCTACAATATG-----AAAA----AG-TGCATAGCTTCTACGAGGCACAATAAGTCTATTGA--TCGTATC-GTTTAT-CGAT-GATATCTGA-TTTCAGCTTCGTT-TTTG-AGA-TCATT----CAGG-AGAAAGTCAC--AA-AG-TTGAC-AGAAAAATGCATCGGAAAAAG-TTCTAACGCAGAT----TTTT---------------ACAA--ATCACAGGCACAT-AC
gi|4 : GAA-GATAATCAG-TAAAGCCGG-T--GA-----------CGCTA--------TGGTTGTTATGCCGAATTAACGGCACTT----CACGC-ATTTAGAAGCAGATACATGTATCTGTTAC----TAAAACATCC-AATTTCTCTCAAATGAGCTACAATCTGGAAAAAAAA----AAATACATAGCTAGTACGAGGCACAATACGTTTATTGA--TCGTATC-GTTTAT-CCGT-GATACCTGA-TTTT-------------T-AGA-TAATT----CGGG-AGAAAGTCATTTAATGG-TTGAT-GAAAAATTGCATCGAAAGAAGTTTCGAGCGTAGATTTTTTTTT---------------AAAAATATTACAGGCAC
gi|5 : actATAAACTCATTTCA-TAAACAACGACTGG-AAATTCACAT------TTTTG-ATG-TTCAAACAAACTGG--TTT---TACAATATATATATA-TCGTC-TTTTGAAGTCATTTTAGAAAGTAACACCCGGTAACATGGAACAG-TGA--CGCCGATCACTGGCA--TTTTTA--------------------CATACATTGACACTGTGCATT-------------
gi|6 : TT-TTTTG---TCATTTTCAAAAGTAACACCAAGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA----CATAGAAGGATTTAACCATCAATCAA-ATTAAATATT-------------GTTTCAGACGAAGACAGTAAATCCCA-AC---TATAGATGACAGTGCGTTATCAGAAttag
gi|7 : TAACAT--AACAA--AATTCGC-GGTCAT-GATAATTTCTTAACGAT---------TCTATCCATGAGTCAA-ATTGCAAATTTTTCTCTAAATTCGTTTAAGACGAAGTTAGT-------ATACAAATACAGATGACAACGTGATATCAGAACATAAA
gi|8 : AAACAAA-----ATTAAACAC-CAACGTCACAT-ATTAAACCGTATGGATACTATACAGCTTC-TCTGATTTTT-----TTTTATTTGGTTGCCGTTGTTGCAGTTACCGGCGATAAATTCTCCAAAATGTGTGGATTTCCAG
gi|9 : ataaaCTTATATCA-TAAGAAA-AACTGACAGAATTAC--------TCATG-TAA-TGCAAACAAGCAGG--TTTACCTACA-------------CAT-----TGA------TTTCGAAAGTAGCACCTCAAAACATGGAACAATTAA--CG-CGATCGT-GGTAA--TATTAC---T---------TTTATTC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGCAATGATGCCCAGGTGACTGACCATTCTTACATGCATTGACATAATCTTGCATTTTCACCACAGA
Alignments
lowQualScore : 1111 11111 222222222222 1 22222 2222 11 1 1 1 1 1 1 1 2222 1 11 1 1111 555555555555555 11 11 44444444 1 1 11 111 444444444444 11 55555555555555 1 5555555555555 88888888888888888 33333 1 1 1111 22 33333 4444444444444 11 11
lowQualScore : 6 5 7777 0 1 0 0 3 1 2222 11111 000000000000 1 0 6 1 6 55555 1111 3 0 33 0 0 0 0 7 0 0 0 1111 0 33 0 8 8 1 0 5 44 4 7777 000000000000000 11 8 0 6 00 77777777 0 0 0 33 777 222222222222 11 66 0 6 99 6 5 66666666666666 1 0 2 0 1 0 5555555555555 11111111111111111 0 1 33333 1 7 0 3 2 6666 1 1 00 33333 1111111111111 88 66 2
lowQualScore : . . .... . . . . . . .... ..... ............ . . . . . ..... .... . . .. . . . . . . . . .... . .. . . . . . . .. . .... ............... .. . . . .. ........ . . . .. ... ............ .. .. . . .. . . .............. . . . . . . ............. ................. . . ..... . . . . . .... . . .. ..... ............. .. .. .
lowQualScore : 7 7 0000 4 4 1 7 0 4 1111 99999 333333333333 4 7 6 0 7 00000 2222 2 2 88 0 0 0 0 0 0 0 0 2222 0 88 0 0 0 0 8 6 88 0 0000 000000000000000 00 0 2 7 33 88888888 0 0 2 88 555 888888888888 22 44 2 7 22 7 7 66666666666666 0 2 0 0 2 2 0000000000000 00000000000000000 7 0 33333 0 3 7 3 0 7777 0 0 77 33333 3333333333333 00 55 5
consensus : CGAG-GATAATCAG-TAACGCCGG-C--GAATCGGTTGTAACGCCAGATTCCGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCCCANTTTCT-TCAAATGAGCTACAATATG-----AAAA----AGATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATCG-TTTATC-GATG-ATACCTGA-TTTTAGCTTCGTT-TTTT-AGAT-CATT----CAGG-AGAAAGTCAC--AA-GGTT-GACGG-AAAAATGCATCGGAAGAAGTTTCNAACGTAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATCACAA------TTTTG-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGTC-TTTTGAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA----T---------TTTATCCATGAATCGA-ATTGTACATT-------------GTTTCAGACGAAGACAGT-------A-AC---TATAGATGACAGCGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATGGAATNAAATAAA-----ANTGAGAACACAGCG-CACGTCATTTGAACATATTAATACTACNCNCCCCC-TCTGATTTTT-----TTTTGTT-GGTTGCCGTTGTTGCAGTTACCGGCGATAANTTCTCCGAAATGTGTGGATTCGCAG
Reference ( family-411 ) : CGAG-GATAATCAG-TAACGCCGG-C--GAATCGGTTGTAACGCCAGATTCCGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCCCANTTTCT-TCAAATGAGCTACAATATG-----AAAA----AGATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATCG-TTTATC-GATG-ATACCTGA-TTTTAGCTTCGTT-TTTT-AGAT-CATT----CAGG-AGAAAGTCAC--AA-GGTT-GACGG-AAAAATGCATCGGAAGAAGTTTCNAACGTAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATCACAA------TTTTG-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGTC-TTTTGAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA----T---------TTTATCCATGAATCGA-ATTGTACATT-------------GTTTCAGACGAAGACAGT-------A-AC---TATAGATGACAGCGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATGGAATNAAATAAA-----ANTGAGAACACAGCG-CACGTCATTTGAACATATTAATACTACNCNCCCCC-TCTGATTTTT-----TTTTGTT-GGTTGCCGT-GTTGCAGTTACCGGCGATAANTTCTCCGAAATGTGTGGATTCGCAG
gi|1 : CGAG-GATAATC---TAACGCCGG-C--GAATCGGTTGTAACGCCAGATACTGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCTCACTTTGT-TCAAATGAGCTACAATATG-----AAAA----AAATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATCG-TTTATC-GATG-ATGCCTGA-TTTTGGCTTCGTT-TTTT-AGAT-CATT----CAGA-AGAAAGACAC--AA-GTTT-GACAG-AAAAATGCATCGGAAGAAGTTTCTTACGTAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATGAACTCATTTCA-TAAACAACGATTGG-AAAATCACAAATATTATTTTA-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGCC-TTTTAAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAACTTTTT-----T---------TTTATCCATGAATCAA-ATTGTACATT-------------GTTTCAGGTGAAGAC-----------------CATAGATGACAGTGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATAGAATGAAATAAA-----ACTGAGAACACAGTG-CACGTTATTT--ACATATTAATACTACCCCCCCCC--CTGATGTTT-----TTTTG-------------GTTG--GTTACCGGCGATA-TTTCTCCGAAATATGTGGATTCGCAG
gi|10 : AG-TAACGCTGGGC--GAATCAGTTGTAATGCCAGATTCCGGTAATTGTAACACCTCATTCATGGCGTTT----TACACAAG--AGAAGATAATATCGGGA------AG----AAAAATGT-TAAATTTCT-Tctagtgtatcctatccgtatctcgatttatgtgttcacacttttataag
gi|11 : T-GATGA-ACAACTGCAACGAAAGAAGTTTCGAACGAAGAT----TTTTTTTTACCTATCACAGACAT--ATTATAGGCACAT-AATCATATAAAAATAAACTTAGTTCA-TAAAGAACAATTTA-AGAATCACttaagggatgataaa
gi|12 : GAG-GGTAATCAG-TAACGCCAG-C--GATTC---TG-GAC-----ATT---GTAAT---AGCACGGCGTTCACG-CGTTTGCCATATAC-----AGAAGCAGATACCATAA------AT----TAAAACAT-TCAATTTCT-
gi|13 : cactAATGGAATTAATTAAATCATCAATGAGAACACAGTA-CAAGACATTTGAA-ATATTAATACTCCTCTCCCCCTTCTGATTTTTCCCCATTTTGTT-GGTTACTGgtt
gi|14 : aACACCGG-C--GAAACGGTTGTAACGCCGGGTTCCGGTAATTGTAACACCGCATTCA-GGCGTTT----TACGCGAG--AGAAGCAAATACCGGGA------AG----TAAAACATGCCATTTTgtgat
gi|16 : ttGACATAC-ACTCGCATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATa
gi|17 : CGAGTGA-AATCAG-TAACGCCGG-C--GAATCGGTTGTA
gi|18 : gttcacCGTAACTTGGAA-AG-TAA--CGCCGATCAC-GGTAATTTCTTA----
gi|2 : AG-TATAATCAGGCAACACCGG-GTGGAATCGGTTGTAACGCCAGATTTCGGTCATTGTAACA--GCAATTACGGCGTTT----TACACAAG--AAA--CAGATACCGGGA------AGGGGTTAAA-----CCA---------AATTGAGCTACAATATG-----AAAAGGAAAGATACATAGTTGGTACAGAGCACAATAAGTTTATTGAATTCGTATCGGTTTATCCGATGGATACCTAACTTTTAGCTTCGTTATTTTGAGATTCATTTGAACAGGTGGAAAGTCAC--GA-GGTTTGATGGGAAAAATGCATCGGAAGA---------------T----TTTT---------------ACAA--ATCGCGGGCACATAACTCAAATATACCCGAACTCATTTCATTAAAC-ACGATTG---AAATCAC-A------TTTTGCTTGTTTCAAACAAAACAATTTTT---TACTAT-----A-TAGTCGTCGTTTTGAAGTCATTTTTCGAAGTAACA
gi|3 : GAG-GGTCATCAG-TAACGCCGG-C--GAATCGGTTATAACGCCAGATTCCGGTAATTGTAACACCGCATTAACGGCGTTT----TACACGAC--AGAAGCAGATATCGGGA------AT----TAAAACATCCCATTTCTT-TCAAATGAGCTACAATATG-----AAAA----AG-TGCATAGCTTCTACGAGGCACAATAAGTCTATTGA--TCGTATCG-TTTATC-GATG-ATATCTGA-TTTCAGCTTCGTT-TTTG-AGAT-CATT----CAGG-AGAAAGTCAC--AA-AGTT-GACAG-AAAAATGCATCGGAAAAAG-TTCTAACGCAGAT----TTTT---------------ACAA--ATCACAGGCACAT-AC
gi|4 : GAA-GATAATCAG-TAAAGCCGG-T--GA-----------CGCTA--------TGGTTGTTATGCCGAATTAACGGCACTT----CACGC-ATTTAGAAGCAGATACATGTATCTGTTAC----TAAAACATCC-AATTTCTCTCAAATGAGCTACAATCTGGAAAAAAAA----AAATACATAGCTAGTACGAGGCACAATACGTTTATTGA--TCGTATCG-TTTATC-CGTG-ATACCTGA-TTTT-------------T-AGAT-AATT----CGGG-AGAAAGTCATTTAATGGTT-GATGA-AAAATTGCATCGAAAGAAGTTTCGAGCGTAGATTTTTTTTT---------------AAAAATATTACAGGCAC
gi|5 : actATAAACTCATTTCA-TAAACAACGACTGG-AAATTCACAT------TTTTG-ATG-TTCAAACAAACTGG--TTT---TACAATATATATATA-TCGTC-TTTTGAAGTCATTTTAGAAAGTAACACCCGGTAACATGGAACAG-TGA--CGCCGATCACTGGCA--TTTTTA--------------------CATACATTGACACTGTGCATT-------------
gi|6 : TT-TTTTG---TCATTTTCAAAAGTAACACCAAGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA----CATAGAAGGATTTAACCATCAATCAA-ATTAAATATT-------------GTTTCAGACGAAGACAGTAAATCCCA-AC---TATAGATGACAGTGCGTTATCAGAAttag
gi|7 : TAACAT--AACAA--AATTCGC-GGTCAT-GATAATTTCTTAACGAT---------TCTATCCATGAGTCAA-ATTGCAAATTTTTCTCTAAATTCGTTTAAGACGAAGTTAGT-------ATACAAATACAGATGACAACGTGATATCAGAACATAAA
gi|8 : AAACAAA-----ATTAAACAC-CAACGTCACAT-ATTAAACCGTATGGATACTATACAGCTTC-TCTGATTTTT-----TTTTATTTGGTTGCCGTTGTTGCAGTTACCGGCGATAAATTCTCCAAAATGTGTGGATTTCCAG
gi|9 : ataaaCTTATATCA-TAAGAAA-AACTGACAGAATTAC--------TCATG-TAA-TGCAAACAAGCAGG--TTTACCTACA-------------CAT-----TGA------TTTCGAAAGTAGCACCTCAAAACATGGAACAATTAA--CG-CGATCGT-GGTAA--TATTAC---T---------TTTATTC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGCAATGATGCCCAGGTGACTGACCATTCTTACATGCATTGACATAATCTTGCATTTTCACCACAGA
Alignments
lowQualScore : 1111 11111 222222222222 1 22222 2222 11 1 1 1 1 1 1 1 2222 1 11 1111 1111 555555555555555 11 11 44444444 1 1 11 111 444444444444 11 55555555555555 1 5555555555555 88888888888888888 33333 1 1 1111 22 33333 222222222222 11 11
lowQualScore : 6 5 7777 0 1 0 0 3 1 2222 11111 000000000000 1 0 6 1 6 55555 1111 3 0 33 0 0 0 0 7 0 0 0 1111 0 33 0000 8 1 0 5 44 4 7777 000000000000000 11 8 0 6 00 77777777 0 0 0 33 777 222222222222 11 66 0 6 99 6 5 66666666666666 1 0 2 0 1 0 5555555555555 11111111111111111 0 1 33333 1 7 0 3 2 6666 1 1 00 33333 555555555555 88 66 2
lowQualScore : . . .... . . . . . . .... ..... ............ . . . . . ..... .... . . .. . . . . . . . . .... . .. .... . . . . .. . .... ............... .. . . . .. ........ . . . .. ... ............ .. .. . . .. . . .............. . . . . . . ............. ................. . . ..... . . . . . .... . . .. ..... ............ .. .. .
lowQualScore : 7 7 0000 4 4 1 7 0 4 1111 99999 333333333333 4 7 6 0 7 00000 2222 2 2 88 0 0 0 0 0 0 0 0 2222 0 88 2222 0 0 8 6 88 0 0000 000000000000000 00 0 2 7 33 88888888 0 0 2 88 555 888888888888 22 44 2 7 22 7 7 66666666666666 0 2 0 0 2 2 0000000000000 00000000000000000 7 0 33333 0 3 7 3 0 7777 0 0 77 33333 333333333333 00 55 5
consensus : CGAG-GATAATCAG-TAACGCCGG-C--GAATCGGTTGTAACGCCAGATTCCGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCCCANTTTCT-TCAAATGAGCTACAATATG-----AAAA----AGATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATC-GTTTAT-CGAT-GATACCTGA-TTTTAGCTTCGTT-TTTT-AGA-TCATT----CAGG-AGAAAGTCAC--AA-GG-TTGAC-GGAAAAATGCATCGGAAGAAGTTTCNAACGTAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATCACAA------TTTTG-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGTC-TTTTGAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA----T---------TTTATCCATGAATCGA-ATTGTACATT-------------GTTTCAGACGAAGACAGT-------A-AC---TATAGATGACAGCGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATGGAATNAAATAAA-----ANTGAGAACACAGCG-CACGTCATTTGAACATATTAATACTACNCNCCCCC-TCTGATTTTT-----TTTTGTT-GGTTGCCG-TGTTGCAGTTACCGGCGATAANTTCTCCGAAATGTGTGGATTCGCAG
Reference ( family-411 ) : CGAG-GATAATCAG-TAACGCCGG-C--GAATCGGTTGTAACGCCAGATTCCGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCCCANTTTCT-TCAAATGAGCTACAATATG-----AAAA----AGATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATC-GTTTAT-CGAT-GATACCTGA-TTTTAGCTTCGTT-TTTT-AGA-TCATT----CAGG-AGAAAGTCAC--AA-GG-TTGAC-GGAAAAATGCATCGGAAGAAGTTTCNAACGTAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATCACAA------TTTTG-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGTC-TTTTGAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA----T---------TTTATCCATGAATCGA-ATTGTACATT-------------GTTTCAGACGAAGACAGT-------A-AC---TATAGATGACAGCGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATGGAATNAAATAAA-----ANTGAGAACACAGCG-CACGTCATTTGAACATATTAATACTACNCNCCCCC-TCTGATTTTT-----TTTTGTT-GGTTGCCGTTGTTGCAGTTACCGGCGATAANTTCTCCGAAATGTGTGGATTCGCAG
gi|1 : CGAG-GATAATC---TAACGCCGG-C--GAATCGGTTGTAACGCCAGATACTGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCTCACTTTGT-TCAAATGAGCTACAATATG-----AAAA----AAATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATC-GTTTAT-CGAT-GATGCCTGA-TTTTGGCTTCGTT-TTTT-AGA-TCATT----CAGA-AGAAAGACAC--AA-GT-TTGAC-AGAAAAATGCATCGGAAGAAGTTTCTTACGTAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATGAACTCATTTCA-TAAACAACGATTGG-AAAATCACAAATATTATTTTA-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGCC-TTTTAAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAACTTTTT-----T---------TTTATCCATGAATCAA-ATTGTACATT-------------GTTTCAGGTGAAGAC-----------------CATAGATGACAGTGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATAGAATGAAATAAA-----ACTGAGAACACAGTG-CACGTTATTT--ACATATTAATACTACCCCCCCCC--CTGATGTTT-----TTTTG-------------GTTG--GTTACCGGCGATA-TTTCTCCGAAATATGTGGATTCGCAG
gi|10 : AG-TAACGCTGGGC--GAATCAGTTGTAATGCCAGATTCCGGTAATTGTAACACCTCATTCATGGCGTTT----TACACAAG--AGAAGATAATATCGGGA------AG----AAAAATGT-TAAATTTCT-Tctagtgtatcctatccgtatctcgatttatgtgttcacacttttataag
gi|11 : TGAT-GAACAACTGCAACGAAAGAAGTTTCGAACGAAGAT----TTTTTTTTACCTATCACAGACAT--ATTATAGGCACAT-AATCATATAAAAATAAACTTAGTTCA-TAAAGAACAATTTA-AGAATCACttaagggatgataaa
gi|12 : GAG-GGTAATCAG-TAACGCCAG-C--GATTC---TG-GAC-----ATT---GTAAT---AGCACGGCGTTCACG-CGTTTGCCATATAC-----AGAAGCAGATACCATAA------AT----TAAAACAT-TCAATTTCT-
gi|13 : cactAATGGAATTAATTAAATCATCAATGAGAACACAGTA-CAAGACATTTGAA-ATATTAATACTCCTCTCCCCCTTCTGATTTTTCCCCATTTTGTT-GGTTACTGGTGgtt
gi|14 : aACACCGG-C--GAAACGGTTGTAACGCCGGGTTCCGGTAATTGTAACACCGCATTCA-GGCGTTT----TACGCGAG--AGAAGCAAATACCGGGA------AG----TAAAACATGCCATTTTat
gi|16 : ttGACATAC-ACTCGCATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATa
gi|17 : CGAGTGA-AATCAG-TAACGCCGG-C--GAATCGGTTGTA
gi|18 : gttcacCGTAACTTGGAA-AG-TAA--CGCCGATCAC-GGTAATTTCTTA----
gi|2 : AG-TATAATCAGGCAACACCGG-GTGGAATCGGTTGTAACGCCAGATTTCGGTCATTGTAACA--GCAATTACGGCGTTT----TACACAAG--AAA--CAGATACCGGGA------AGGGGTTAAA-----CCA---------AATTGAGCTACAATATG-----AAAAGGAAAGATACATAGTTGGTACAGAGCACAATAAGTTTATTGAATTCGTATCGGTTTATCCGATGGATACCTAACTTTTAGCTTCGTTATTTTGAGATTCATTTGAACAGGTGGAAAGTCAC--GA-GGTTTGATGGGAAAAATGCATCGGA---------------AGAT----TTTT---------------ACAA--ATCGCGGGCACATAACTCAAATATACCCGAACTCATTTCATTAAAC-ACGATTG---AAATCAC-A------TTTTGCTTGTTTCAAACAAAACAATTTTT---TACTAT-----A-TAGTCGTCGTTTTGAAGTCATTTTTCGAAGTAACA
gi|3 : GAG-GGTCATCAG-TAACGCCGG-C--GAATCGGTTATAACGCCAGATTCCGGTAATTGTAACACCGCATTAACGGCGTTT----TACACGAC--AGAAGCAGATATCGGGA------AT----TAAAACATCCCATTTCTT-TCAAATGAGCTACAATATG-----AAAA----AG-TGCATAGCTTCTACGAGGCACAATAAGTCTATTGA--TCGTATC-GTTTAT-CGAT-GATATCTGA-TTTCAGCTTCGTT-TTTG-AGA-TCATT----CAGG-AGAAAGTCAC--AA-AG-TTGAC-AGAAAAATGCATCGGAAAAAG-TTCTAACGCAGAT----TTTT---------------ACAA--ATCACAGGCACAT-AC
gi|4 : GAA-GATAATCAG-TAAAGCCGG-T--GA-----------CGCTA--------TGGTTGTTATGCCGAATTAACGGCACTT----CACGC-ATTTAGAAGCAGATACATGTATCTGTTAC----TAAAACATCC-AATTTCTCTCAAATGAGCTACAATCTGGAAAAAAAA----AAATACATAGCTAGTACGAGGCACAATACGTTTATTGA--TCGTATC-GTTTAT-CCGT-GATACCTGA-TTTT-------------T-AGA-TAATT----CGGG-AGAAAGTCATTTAATGG-TTGAT-GAAAAATTGCATCGAAAGAAGTTTCGAGCGTAGATTTTTTTTT---------------AAAAATATTACAGGCAC
gi|5 : actATAAACTCATTTCA-TAAACAACGACTGG-AAATTCACAT------TTTTG-ATG-TTCAAACAAACTGG--TTT---TACAATATATATATA-TCGTC-TTTTGAAGTCATTTTAGAAAGTAACACCCGGTAACATGGAACAG-TGA--CGCCGATCACTGGCA--TTTTTA--------------------CATACATTGACACTGTGCATT-------------
gi|6 : TT-TTTTG---TCATTTTCAAAAGTAACACCAAGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA----CATAGAAGGATTTAACCATCAATCAA-ATTAAATATT-------------GTTTCAGACGAAGACAGTAAATCCCA-AC---TATAGATGACAGTGCGTTATCAGAAttag
gi|7 : TAACAT--AACAA--AATTCGC-GGTCAT-GATAATTTCTTAACGAT---------TCTATCCATGAGTCAA-ATTGCAAATTTTTCTCTAAATTCGTTTAAGACGAAGTTAGT-------ATACAAATACAGATGACAACGTGATATCAGAACATAAA
gi|8 : AAACAAA-----ATTAAACAC-CAACGTCACAT-ATTAAACCGTATGGATACTATACAGCTTC-TCTGATTTTT-----TTTTATTTGGTTGCCGTTGTTGCAGTTACCGGCGATAAATTCTCCAAAATGTGTGGATTTCCAG
gi|9 : ataaaCTTATATCA-TAAGAAA-AACTGACAGAATTAC--------TCATG-TAA-TGCAAACAAGCAGG--TTTACCTACA-------------CAT-----TGA------TTTCGAAAGTAGCACCTCAAAACATGGAACAATTAA--CG-CGATCGT-GGTAA--TATTAC---T---------TTTATTC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGCAATGATGCCCAGGTGACTGACCATTCTTACATGCATTGACATAATCTTGCATTTTCACCACAGA
Alignments
lowQualScore : 1111 11111 222222222222 1 22222 2222 11 1 1 1 1 1 1 1 2222 1 11 1 1111 555555555555555 11 11 44444444 1 1 11 111 444444444444 11 55555555555555 1 5555555555555 88888888888888888 33333 1 1 1111 22 33333 4444444444444 11 11
lowQualScore : 6 5 7777 0 1 0 0 3 1 2222 11111 000000000000 1 0 6 1 6 55555 1111 3 0 33 0 0 0 0 7 0 0 0 1111 0 33 0 8 8 1 0 5 44 4 7777 000000000000000 11 8 0 6 00 77777777 0 0 0 33 777 222222222222 11 66 0 6 99 6 5 66666666666666 1 0 2 0 1 0 5555555555555 11111111111111111 0 1 33333 1 7 0 3 2 6666 1 1 00 33333 1111111111111 88 66 2
lowQualScore : . . .... . . . . . . .... ..... ............ . . . . . ..... .... . . .. . . . . . . . . .... . .. . . . . . . .. . .... ............... .. . . . .. ........ . . . .. ... ............ .. .. . . .. . . .............. . . . . . . ............. ................. . . ..... . . . . . .... . . .. ..... ............. .. .. .
lowQualScore : 7 7 0000 4 4 1 7 0 4 1111 99999 333333333333 4 7 6 0 7 00000 2222 2 2 88 0 0 0 0 0 0 0 0 2222 0 88 0 0 0 0 8 6 88 0 0000 000000000000000 00 0 2 7 33 88888888 0 0 2 88 555 888888888888 22 44 2 7 22 7 7 66666666666666 0 2 0 0 2 2 0000000000000 00000000000000000 7 0 33333 0 3 7 3 0 7777 0 0 77 33333 3333333333333 00 55 5
consensus : CGAG-GATAATCAG-TAACGCCGG-C--GAATCGGTTGTAACGCCAGATTCCGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCCCANTTTCT-TCAAATGAGCTACAATATG-----AAAA----AGATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATCG-TTTATC-GATG-ATACCTGA-TTTTAGCTTCGTT-TTTT-AGAT-CATT----CAGG-AGAAAGTCAC--AA-GGTT-GACGG-AAAAATGCATCGGAAGAAGTTTCNAACGTAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATCACAA------TTTTG-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGTC-TTTTGAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA----T---------TTTATCCATGAATCGA-ATTGTACATT-------------GTTTCAGACGAAGACAGT-------A-AC---TATAGATGACAGCGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATGGAATNAAATAAA-----ANTGAGAACACAGCG-CACGTCATTTGAACATATTAATACTACNCNCCCCC-TCTGATTTTT-----TTTTGTT-GGTTGCCGTTGTTGCAGTTACCGGCGATAANTTCTCCGAAATGTGTGGATTCGCAG
Reference ( family-411 ) : CGAG-GATAATCAG-TAACGCCGG-C--GAATCGGTTGTAACGCCAGATTCCGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCCCANTTTCT-TCAAATGAGCTACAATATG-----AAAA----AGATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATCG-TTTATC-GATG-ATACCTGA-TTTTAGCTTCGTT-TTTT-AGAT-CATT----CAGG-AGAAAGTCAC--AA-GGTT-GACGG-AAAAATGCATCGGAAGAAGTTTCNAACGTAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATCACAA------TTTTG-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGTC-TTTTGAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA----T---------TTTATCCATGAATCGA-ATTGTACATT-------------GTTTCAGACGAAGACAGT-------A-AC---TATAGATGACAGCGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATGGAATNAAATAAA-----ANTGAGAACACAGCG-CACGTCATTTGAACATATTAATACTACNCNCCCCC-TCTGATTTTT-----TTTTGTT-GGTTGCCGT-GTTGCAGTTACCGGCGATAANTTCTCCGAAATGTGTGGATTCGCAG
gi|1 : CGAG-GATAATC---TAACGCCGG-C--GAATCGGTTGTAACGCCAGATACTGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCTCACTTTGT-TCAAATGAGCTACAATATG-----AAAA----AAATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATCG-TTTATC-GATG-ATGCCTGA-TTTTGGCTTCGTT-TTTT-AGAT-CATT----CAGA-AGAAAGACAC--AA-GTTT-GACAG-AAAAATGCATCGGAAGAAGTTTCTTACGTAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATGAACTCATTTCA-TAAACAACGATTGG-AAAATCACAAATATTATTTTA-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGCC-TTTTAAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAACTTTTT-----T---------TTTATCCATGAATCAA-ATTGTACATT-------------GTTTCAGGTGAAGAC-----------------CATAGATGACAGTGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATAGAATGAAATAAA-----ACTGAGAACACAGTG-CACGTTATTT--ACATATTAATACTACCCCCCCCC--CTGATGTTT-----TTTTG-------------GTTG--GTTACCGGCGATA-TTTCTCCGAAATATGTGGATTCGCAG
gi|10 : AG-TAACGCTGGGC--GAATCAGTTGTAATGCCAGATTCCGGTAATTGTAACACCTCATTCATGGCGTTT----TACACAAG--AGAAGATAATATCGGGA------AG----AAAAATGT-TAAATTTCT-Tctagtgtatcctatccgtatctcgatttatgtgttcacacttttataag
gi|11 : T-GATGA-ACAACTGCAACGAAAGAAGTTTCGAACGAAGAT----TTTTTTTTACCTATCACAGACAT--ATTATAGGCACAT-AATCATATAAAAATAAACTTAGTTCA-TAAAGAACAATTTA-AGAATCACttaagggatgataaa
gi|12 : GAG-GGTAATCAG-TAACGCCAG-C--GATTC---TG-GAC-----ATT---GTAAT---AGCACGGCGTTCACG-CGTTTGCCATATAC-----AGAAGCAGATACCATAA------AT----TAAAACAT-TCAATTTCT-
gi|13 : cactAATGGAATTAATTAAATCATCAATGAGAACACAGTA-CAAGACATTTGAA-ATATTAATACTCCTCTCCCCCTTCTGATTTTTCCCCATTTTGTT-GGTTACTGgtt
gi|14 : aACACCGG-C--GAAACGGTTGTAACGCCGGGTTCCGGTAATTGTAACACCGCATTCA-GGCGTTT----TACGCGAG--AGAAGCAAATACCGGGA------AG----TAAAACATGCCATTTTgtgat
gi|16 : ttGACATAC-ACTCGCATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATa
gi|17 : CGAGTGA-AATCAG-TAACGCCGG-C--GAATCGGTTGTA
gi|18 : gttcacCGTAACTTGGAA-AG-TAA--CGCCGATCAC-GGTAATTTCTTA----
gi|2 : AG-TATAATCAGGCAACACCGG-GTGGAATCGGTTGTAACGCCAGATTTCGGTCATTGTAACA--GCAATTACGGCGTTT----TACACAAG--AAA--CAGATACCGGGA------AGGGGTTAAA-----CCA---------AATTGAGCTACAATATG-----AAAAGGAAAGATACATAGTTGGTACAGAGCACAATAAGTTTATTGAATTCGTATCGGTTTATCCGATGGATACCTAACTTTTAGCTTCGTTATTTTGAGATTCATTTGAACAGGTGGAAAGTCAC--GA-GGTTTGATGGGAAAAATGCATCGGAAGA---------------T----TTTT---------------ACAA--ATCGCGGGCACATAACTCAAATATACCCGAACTCATTTCATTAAAC-ACGATTG---AAATCAC-A------TTTTGCTTGTTTCAAACAAAACAATTTTT---TACTAT-----A-TAGTCGTCGTTTTGAAGTCATTTTTCGAAGTAACA
gi|3 : GAG-GGTCATCAG-TAACGCCGG-C--GAATCGGTTATAACGCCAGATTCCGGTAATTGTAACACCGCATTAACGGCGTTT----TACACGAC--AGAAGCAGATATCGGGA------AT----TAAAACATCCCATTTCTT-TCAAATGAGCTACAATATG-----AAAA----AG-TGCATAGCTTCTACGAGGCACAATAAGTCTATTGA--TCGTATCG-TTTATC-GATG-ATATCTGA-TTTCAGCTTCGTT-TTTG-AGAT-CATT----CAGG-AGAAAGTCAC--AA-AGTT-GACAG-AAAAATGCATCGGAAAAAG-TTCTAACGCAGAT----TTTT---------------ACAA--ATCACAGGCACAT-AC
gi|4 : GAA-GATAATCAG-TAAAGCCGG-T--GA-----------CGCTA--------TGGTTGTTATGCCGAATTAACGGCACTT----CACGC-ATTTAGAAGCAGATACATGTATCTGTTAC----TAAAACATCC-AATTTCTCTCAAATGAGCTACAATCTGGAAAAAAAA----AAATACATAGCTAGTACGAGGCACAATACGTTTATTGA--TCGTATCG-TTTATC-CGTG-ATACCTGA-TTTT-------------T-AGAT-AATT----CGGG-AGAAAGTCATTTAATGGTT-GATGA-AAAATTGCATCGAAAGAAGTTTCGAGCGTAGATTTTTTTTT---------------AAAAATATTACAGGCAC
gi|5 : actATAAACTCATTTCA-TAAACAACGACTGG-AAATTCACAT------TTTTG-ATG-TTCAAACAAACTGG--TTT---TACAATATATATATA-TCGTC-TTTTGAAGTCATTTTAGAAAGTAACACCCGGTAACATGGAACAG-TGA--CGCCGATCACTGGCA--TTTTTA--------------------CATACATTGACACTGTGCATT-------------
gi|6 : TT-TTTTG---TCATTTTCAAAAGTAACACCAAGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA----CATAGAAGGATTTAACCATCAATCAA-ATTAAATATT-------------GTTTCAGACGAAGACAGTAAATCCCA-AC---TATAGATGACAGTGCGTTATCAGAAttag
gi|7 : TAACAT--AACAA--AATTCGC-GGTCAT-GATAATTTCTTAACGAT---------TCTATCCATGAGTCAA-ATTGCAAATTTTTCTCTAAATTCGTTTAAGACGAAGTTAGT-------ATACAAATACAGATGACAACGTGATATCAGAACATAAA
gi|8 : AAACAAA-----ATTAAACAC-CAACGTCACAT-ATTAAACCGTATGGATACTATACAGCTTC-TCTGATTTTT-----TTTTATTTGGTTGCCGTTGTTGCAGTTACCGGCGATAAATTCTCCAAAATGTGTGGATTTCCAG
gi|9 : ataaaCTTATATCA-TAAGAAA-AACTGACAGAATTAC--------TCATG-TAA-TGCAAACAAGCAGG--TTTACCTACA-------------CAT-----TGA------TTTCGAAAGTAGCACCTCAAAACATGGAACAATTAA--CG-CGATCGT-GGTAA--TATTAC---T---------TTTATTC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGCAATGATGCCCAGGTGACTGACCATTCTTACATGCATTGACATAATCTTGCATTTTCACCACAGA
Alignments
lowQualScore : 1111 11111 222222222222 1 22222 2222 11 1 1 1 1 1 1 1 2222 1 11 1111 1111 555555555555555 11 11 44444444 1 1 11 111 444444444444 11 55555555555555 1 5555555555555 88888888888888888 33333 1 1 1111 22 33333 222222222222 11 11
lowQualScore : 6 5 7777 0 1 0 0 3 1 2222 11111 000000000000 1 0 6 1 6 55555 1111 3 0 33 0 0 0 0 7 0 0 0 1111 0 33 0000 8 1 0 5 44 4 7777 000000000000000 11 8 0 6 00 77777777 0 0 0 33 777 222222222222 11 66 0 6 99 6 5 66666666666666 1 0 2 0 1 0 5555555555555 11111111111111111 0 1 33333 1 7 0 3 2 6666 1 1 00 33333 555555555555 88 66 2
lowQualScore : . . .... . . . . . . .... ..... ............ . . . . . ..... .... . . .. . . . . . . . . .... . .. .... . . . . .. . .... ............... .. . . . .. ........ . . . .. ... ............ .. .. . . .. . . .............. . . . . . . ............. ................. . . ..... . . . . . .... . . .. ..... ............ .. .. .
lowQualScore : 7 7 0000 4 4 1 7 0 4 1111 99999 333333333333 4 7 6 0 7 00000 2222 2 2 88 0 0 0 0 0 0 0 0 2222 0 88 2222 0 0 8 6 88 0 0000 000000000000000 00 0 2 7 33 88888888 0 0 2 88 555 888888888888 22 44 2 7 22 7 7 66666666666666 0 2 0 0 2 2 0000000000000 00000000000000000 7 0 33333 0 3 7 3 0 7777 0 0 77 33333 333333333333 00 55 5
consensus : CGAG-GATAATCAG-TAACGCCGG-C--GAATCGGTTGTAACGCCAGATTCCGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCCCANTTTCT-TCAAATGAGCTACAATATG-----AAAA----AGATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATC-GTTTAT-CGAT-GATACCTGA-TTTTAGCTTCGTT-TTTT-AGA-TCATT----CAGG-AGAAAGTCAC--AA-GG-TTGAC-GGAAAAATGCATCGGAAGAAGTTTCNAACGTAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATCACAA------TTTTG-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGTC-TTTTGAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA----T---------TTTATCCATGAATCGA-ATTGTACATT-------------GTTTCAGACGAAGACAGT-------A-AC---TATAGATGACAGCGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATGGAATNAAATAAA-----ANTGAGAACACAGCG-CACGTCATTTGAACATATTAATACTACNCNCCCCC-TCTGATTTTT-----TTTTGTT-GGTTGCCG-TGTTGCAGTTACCGGCGATAANTTCTCCGAAATGTGTGGATTCGCAG
Reference ( family-411 ) : CGAG-GATAATCAG-TAACGCCGG-C--GAATCGGTTGTAACGCCAGATTCCGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCCCANTTTCT-TCAAATGAGCTACAATATG-----AAAA----AGATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATC-GTTTAT-CGAT-GATACCTGA-TTTTAGCTTCGTT-TTTT-AGA-TCATT----CAGG-AGAAAGTCAC--AA-GG-TTGAC-GGAAAAATGCATCGGAAGAAGTTTCNAACGTAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATCACAA------TTTTG-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGTC-TTTTGAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA----T---------TTTATCCATGAATCGA-ATTGTACATT-------------GTTTCAGACGAAGACAGT-------A-AC---TATAGATGACAGCGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATGGAATNAAATAAA-----ANTGAGAACACAGCG-CACGTCATTTGAACATATTAATACTACNCNCCCCC-TCTGATTTTT-----TTTTGTT-GGTTGCCGTTGTTGCAGTTACCGGCGATAANTTCTCCGAAATGTGTGGATTCGCAG
gi|1 : CGAG-GATAATC---TAACGCCGG-C--GAATCGGTTGTAACGCCAGATACTGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCTCACTTTGT-TCAAATGAGCTACAATATG-----AAAA----AAATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATC-GTTTAT-CGAT-GATGCCTGA-TTTTGGCTTCGTT-TTTT-AGA-TCATT----CAGA-AGAAAGACAC--AA-GT-TTGAC-AGAAAAATGCATCGGAAGAAGTTTCTTACGTAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATGAACTCATTTCA-TAAACAACGATTGG-AAAATCACAAATATTATTTTA-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGCC-TTTTAAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAACTTTTT-----T---------TTTATCCATGAATCAA-ATTGTACATT-------------GTTTCAGGTGAAGAC-----------------CATAGATGACAGTGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATAGAATGAAATAAA-----ACTGAGAACACAGTG-CACGTTATTT--ACATATTAATACTACCCCCCCCC--CTGATGTTT-----TTTTG-------------GTTG--GTTACCGGCGATA-TTTCTCCGAAATATGTGGATTCGCAG
gi|10 : AG-TAACGCTGGGC--GAATCAGTTGTAATGCCAGATTCCGGTAATTGTAACACCTCATTCATGGCGTTT----TACACAAG--AGAAGATAATATCGGGA------AG----AAAAATGT-TAAATTTCT-Tctagtgtatcctatccgtatctcgatttatgtgttcacacttttataag
gi|11 : TGAT-GAACAACTGCAACGAAAGAAGTTTCGAACGAAGAT----TTTTTTTTACCTATCACAGACAT--ATTATAGGCACAT-AATCATATAAAAATAAACTTAGTTCA-TAAAGAACAATTTA-AGAATCACttaagggatgataaa
gi|12 : GAG-GGTAATCAG-TAACGCCAG-C--GATTC---TG-GAC-----ATT---GTAAT---AGCACGGCGTTCACG-CGTTTGCCATATAC-----AGAAGCAGATACCATAA------AT----TAAAACAT-TCAATTTCT-
gi|13 : cactAATGGAATTAATTAAATCATCAATGAGAACACAGTA-CAAGACATTTGAA-ATATTAATACTCCTCTCCCCCTTCTGATTTTTCCCCATTTTGTT-GGTTACTGGTGgtt
gi|14 : aACACCGG-C--GAAACGGTTGTAACGCCGGGTTCCGGTAATTGTAACACCGCATTCA-GGCGTTT----TACGCGAG--AGAAGCAAATACCGGGA------AG----TAAAACATGCCATTTTat
gi|16 : ttGACATAC-ACTCGCATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATa
gi|17 : CGAGTGA-AATCAG-TAACGCCGG-C--GAATCGGTTGTA
gi|18 : gttcacCGTAACTTGGAA-AG-TAA--CGCCGATCAC-GGTAATTTCTTA----
gi|2 : AG-TATAATCAGGCAACACCGG-GTGGAATCGGTTGTAACGCCAGATTTCGGTCATTGTAACA--GCAATTACGGCGTTT----TACACAAG--AAA--CAGATACCGGGA------AGGGGTTAAA-----CCA---------AATTGAGCTACAATATG-----AAAAGGAAAGATACATAGTTGGTACAGAGCACAATAAGTTTATTGAATTCGTATCGGTTTATCCGATGGATACCTAACTTTTAGCTTCGTTATTTTGAGATTCATTTGAACAGGTGGAAAGTCAC--GA-GGTTTGATGGGAAAAATGCATCGGA---------------AGAT----TTTT---------------ACAA--ATCGCGGGCACATAACTCAAATATACCCGAACTCATTTCATTAAAC-ACGATTG---AAATCAC-A------TTTTGCTTGTTTCAAACAAAACAATTTTT---TACTAT-----A-TAGTCGTCGTTTTGAAGTCATTTTTCGAAGTAACA
gi|3 : GAG-GGTCATCAG-TAACGCCGG-C--GAATCGGTTATAACGCCAGATTCCGGTAATTGTAACACCGCATTAACGGCGTTT----TACACGAC--AGAAGCAGATATCGGGA------AT----TAAAACATCCCATTTCTT-TCAAATGAGCTACAATATG-----AAAA----AG-TGCATAGCTTCTACGAGGCACAATAAGTCTATTGA--TCGTATC-GTTTAT-CGAT-GATATCTGA-TTTCAGCTTCGTT-TTTG-AGA-TCATT----CAGG-AGAAAGTCAC--AA-AG-TTGAC-AGAAAAATGCATCGGAAAAAG-TTCTAACGCAGAT----TTTT---------------ACAA--ATCACAGGCACAT-AC
gi|4 : GAA-GATAATCAG-TAAAGCCGG-T--GA-----------CGCTA--------TGGTTGTTATGCCGAATTAACGGCACTT----CACGC-ATTTAGAAGCAGATACATGTATCTGTTAC----TAAAACATCC-AATTTCTCTCAAATGAGCTACAATCTGGAAAAAAAA----AAATACATAGCTAGTACGAGGCACAATACGTTTATTGA--TCGTATC-GTTTAT-CCGT-GATACCTGA-TTTT-------------T-AGA-TAATT----CGGG-AGAAAGTCATTTAATGG-TTGAT-GAAAAATTGCATCGAAAGAAGTTTCGAGCGTAGATTTTTTTTT---------------AAAAATATTACAGGCAC
gi|5 : actATAAACTCATTTCA-TAAACAACGACTGG-AAATTCACAT------TTTTG-ATG-TTCAAACAAACTGG--TTT---TACAATATATATATA-TCGTC-TTTTGAAGTCATTTTAGAAAGTAACACCCGGTAACATGGAACAG-TGA--CGCCGATCACTGGCA--TTTTTA--------------------CATACATTGACACTGTGCATT-------------
gi|6 : TT-TTTTG---TCATTTTCAAAAGTAACACCAAGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA----CATAGAAGGATTTAACCATCAATCAA-ATTAAATATT-------------GTTTCAGACGAAGACAGTAAATCCCA-AC---TATAGATGACAGTGCGTTATCAGAAttag
gi|7 : TAACAT--AACAA--AATTCGC-GGTCAT-GATAATTTCTTAACGAT---------TCTATCCATGAGTCAA-ATTGCAAATTTTTCTCTAAATTCGTTTAAGACGAAGTTAGT-------ATACAAATACAGATGACAACGTGATATCAGAACATAAA
gi|8 : AAACAAA-----ATTAAACAC-CAACGTCACAT-ATTAAACCGTATGGATACTATACAGCTTC-TCTGATTTTT-----TTTTATTTGGTTGCCGTTGTTGCAGTTACCGGCGATAAATTCTCCAAAATGTGTGGATTTCCAG
gi|9 : ataaaCTTATATCA-TAAGAAA-AACTGACAGAATTAC--------TCATG-TAA-TGCAAACAAGCAGG--TTTACCTACA-------------CAT-----TGA------TTTCGAAAGTAGCACCTCAAAACATGGAACAATTAA--CG-CGATCGT-GGTAA--TATTAC---T---------TTTATTC
blockSeqs : T G GTG A C A GCCA ATTT TCTGTTAC G A C C GAAAA GGAA A AT G C G C A A G T TGAA T TT GGT G C T GA A TTTT TTTTACCTATCACAG AT A T AC AT C T TT ACC ATATATATATA CG AA T TT T T CATAGAAGGA A G C T TTTCTCTAAATTC AGTAAATCCCAAC T TCATC A A T C AACC T T TT CCCCA TTTGGTTGCCGT CA AA C
blockSeqs : . . GC G C A . AAG AGGGGT C A C . . . A . . . . . A . . . . . . TGG . A T TA C . . . . . A A . . . . ATATAG C AA . . . T ACGAT T A . A . AGTATACAAA . T . . . GAA A A T . TTGGTTACTGG
blockSeqs : . . C G T A . GAG AG C T T . . . . . . . . . . . . . . . . AG . A . GA T . . . . . G . . . . . . T A . . . T CT T A . C .
blockSeqs : . . C G C A . AAG AT . T C . . T . . . . . . . . G . . . . . . . .
blockSeqs : . . C G . A . GAC AG . A . . . . . . . .
blockSeqs : . C . . G . . AT . .
blockSeqs : T .
blockSeqCons : CGT***********
originalCons : CGAG-GATAATCAG-TAACGCCGG-C--GAATCGGTTGTAACGCCAGATTCCGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCCCANTTTCT-TCAAATGAGCTACAATATG-----AAAA----AGATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATC-GTTTAT-CGAT-GATACCTGA-TTTTAGCTTCGTT-TTTT-AGA-TCATT----CAGG-AGAAAGTCAC--AA-GG-TTGAC-GGAAAAATGCATCGGAAGAAGTTTCNAACGTAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATCACAA------TTTTG-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGTC-TTTTGAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA----T---------TTTATCCATGAATCGA-ATTGTACATT-------------GTTTCAGACGAAGACAGT-------A-AC---TATAGATGACAGCGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATGGAATNAAATAAA-----ANTGAGAACACAGCG-CACGTCATTTGAACATATTAATACTACNCNCCCCC-TCTGATTTTT-----TTTTGTT-GGTTGCCG-TGTTGCAGTTACCGGCGATAANTTCTCCGAAATGTGTGGATTCGCAG
finalCons : CGAG-GATAATCAG-TAACGCCGG-C--GAATCGGTTGTAACGCCAGATTCCGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCCCANTTTCT-TCAAATGAGCTACAATATG-----AAAA----AGATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATC-GTTTAT-CGAT-GATACCTGA-TTTTAGCTTCGTT-TTTT-AGA-TCATT----CAGG-AGAAAGTCAC--AA-GG-TTGAC-GGAAAAATGCATCGGAAGAAGTTTCNAACGTAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATCACAA------TTTTG-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGTC-TTTTGAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTACGT-----------TTTATCCATGAATCGA-ATTGTACATT-------------GTTTCAGACGAAGACAGT-------A-AC---TATAGATGACAGCGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATGGAATNAAATAAA-----ANTGAGAACACAGCG-CACGTCATTTGAACATATTAATACTACNCNCCCCC-TCTGATTTTT-----TTTTGTT-GGTTGCCG-TGTTGCAGTTACCGGCGATAANTTCTCCGAAATGTGTGGATTCGCAG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGCAATGATGCCCAGGTGACTGACCATTCTTACATGCATTGACATAATCTTGCATTTTCACCACAGA
Alignments
lowQualScore : 1111 22222 222222222222 1 22222222222 11 1 1 1 1 1 1 1 2222 1 11 1111 1111 555555555555555 11 11 44444444 1 1 11 111 444444444444 11 333333333333 7777777777777 88888888888888888 33333 1 1 1111 22 33333 4444444444444 11 11
lowQualScore : 6 5 7777 0 1 0 0 3 1 2222 22222 000000000000 1 0 6 1 6 88888888888 3 0 33 0 0 0 0 7 0 0 0 1111 0 33 0000 8 1 0 5 44 4 7777 000000000000000 11 8 0 6 00 77777777 0 0 0 33 777 222222222222 11 66 0 6 99 6 5 888888888888 6 4 3 3333333333333 11111111111111111 0 1 33333 1 7 0 3 2 6666 1 1 00 33333 1111111111111 88 66 2
lowQualScore : . . .... . . . . . . .... ..... ............ . . . . . ........... . . .. . . . . . . . . .... . .. .... . . . . .. . .... ............... .. . . . .. ........ . . . .. ... ............ .. .. . . .. . . ............ . . . ............. ................. . . ..... . . . . . .... . . .. ..... ............. .. .. .
lowQualScore : 7 7 0000 4 4 1 7 0 4 1111 44444 333333333333 4 7 6 0 7 22222222222 2 2 88 0 0 0 0 0 0 0 0 2222 0 88 2222 0 0 8 6 88 0 0000 000000000000000 00 0 2 7 33 88888888 0 0 2 88 555 888888888888 22 44 2 7 22 7 7 111111111111 0 7 7 3333333333333 00000000000000000 7 0 33333 0 3 7 3 0 7777 0 0 77 33333 3333333333333 00 55 5
consensus : CGAG-GATAATCAG-TAACGCCGG-C--GAATCGGTTGTAACGCCAGATTCCGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCCCANTTTCT-TCAAATGAGCTACAATATG-----AA----AAAGATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATC-GTTTAT-CGAT-GATACCTGA-TTTTAGCTTCGTT-TTTT-AGA-TCATT----CAGG-AGAAAGTCAC--AA-GG-TTGAC-GGAAAAATGCATCGGAAGAAGTTTCNAACGTAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATCACAA------TTTTG-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGTC-TTTTGAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA-CG-T-------TTTATCCATGAATCAAATTGNANATT-------------GTTTCAGACGAAGACAGT-------A-AC---TATAGATGACAGCGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATGGAATNAAATAAA-----ANTGAGAACACAGCG-CACGTCATTTGAACATATTAATACTACNCNCCCCC-TCTGATTTTT-----TTTTGTT-GGTTGCCGTTGTTGCAGTTACCGGCGATAANTTCTCCGAAATGTGTGGATTCGCAG
Reference ( family-411 ) : CGAG-GATAATCAG-TAACGCCGG-C--GAATCGGTTGTAACGCCAGATTCCGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCCCANTTTCT-TCAAATGAGCTACAATATG-----AA----AAAGATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATC-GTTTAT-CGAT-GATACCTGA-TTTTAGCTTCGTT-TTTT-AGA-TCATT----CAGG-AGAAAGTCAC--AA-GG-TTGAC-GGAAAAATGCATCGGAAGAAGTTTCNAACGTAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATCACAA------TTTTG-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGTC-TTTTGAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA-CG-T-------TTTATCCATGAATCGAATTGTACATT-------------GTTTCAGACGAAGACAGT-------A-AC---TATAGATGACAGCGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATGGAATNAAATAAA-----ANTGAGAACACAGCG-CACGTCATTTGAACATATTAATACTACNCNCCCCC-TCTGATTTTT-----TTTTGTT-GGTTGCCGT-GTTGCAGTTACCGGCGATAANTTCTCCGAAATGTGTGGATTCGCAG
gi|1 : CGAG-GATAATC---TAACGCCGG-C--GAATCGGTTGTAACGCCAGATACTGGTAATTGTAACGCCGCATTCACGGCGTTT----TACGCGAG--AGAAGCAGATACCGGGA------AG----TAAAACATCTCACTTTGT-TCAAATGAGCTACAATATG-----AA----AAAAATACATAGCTGGTACGAGGCACAATAAGTCTATTGA--TCGTATC-GTTTAT-CGAT-GATGCCTGA-TTTTGGCTTCGTT-TTTT-AGA-TCATT----CAGA-AGAAAGACAC--AA-GT-TTGAC-AGAAAAATGCATCGGAAGAAGTTTCTTACGTAGAT----TTTT---------------ACAA--ATCACAGGCACAT-ACTCACATAAACATGAACTCATTTCA-TAAACAACGATTGG-AAAATCACAAATATTATTTTA-TTG-TTCAAACAAACCGG--TTT---TACAAT-----T-TA-TCGCC-TTTTAAAGTCATTTTCGAAAGTAACACCCCGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAACTTTTT-----T-------TTTATCCATGAATCAAATTGTACATT-------------GTTTCAGGTGAAGAC-----------------CATAGATGACAGTGCGTTATCAGAACATAGATTTGTATAAAATAACTTTTAATAGAATGAAATAAA-----ACTGAGAACACAGTG-CACGTTATTT--ACATATTAATACTACCCCCCCCC--CTGATGTTT-----TTTTG-------------GTTG--GTTACCGGCGATA-TTTCTCCGAAATATGTGGATTCGCAG
gi|10 : AG-TAACGCTGGGC--GAATCAGTTGTAATGCCAGATTCCGGTAATTGTAACACCTCATTCATGGCGTTT----TACACAAG--AGAAGATAATATCGGGA------AG----AAAAATGT-TAAATTTCT-Tctagtgtatcctatccgtatctcgatttatgtgttcacacttttataag
gi|11 : TGAT-GAACAACTGCAACGAAAGAAGTTTCGAACGAAGAT----TTTTTTTTACCTATCACAGACAT--ATTATAGGCACAT-AATCATATAAAAATAAACTTAGTTCA-TAAAGAACAATTTA-AGAATCACttaagggatgataaa
gi|12 : GAG-GGTAATCAG-TAACGCCAG-C--GATTC---TG-GAC-----ATT---GTAAT---AGCACGGCGTTCACG-CGTTTGCCATATAC-----AGAAGCAGATACCATAA------AT----TAAAACAT-TCAATTTCT-
gi|13 : cactAATGGAATTAATTAAATCATCAATGAGAACACAGTA-CAAGACATTTGAA-ATATTAATACTCCTCTCCCCCTTCTGATTTTTCCCCATTTTGTT-GGTTACTGgtt
gi|14 : aACACCGG-C--GAAACGGTTGTAACGCCGGGTTCCGGTAATTGTAACACCGCATTCA-GGCGTTT----TACGCGAG--AGAAGCAAATACCGGGA------AG----TAAAACATGCCATTTTgtgat
gi|16 : ttGACATAC-ACTCGCATAAACATAAACTCATTTCA-TAAACAACGATTGG-AAAATa
gi|17 : CGAGTGA-AATCAG-TAACGCCGG-C--GAATCGGTTGTA
gi|18 : gttcacCGTAACTTGGAA-AG-TAA--CGCCGATCAC-GGTAATTTCTTA-
gi|2 : AG-TATAATCAGGCAACACCGG-GTGGAATCGGTTGTAACGCCAGATTTCGGTCATTGTAACA--GCAATTACGGCGTTT----TACAC--A--AGAAACAGATACCGGGA------AGGGGTTAAA-----CCA---------AATTGAGCTACAATATG-----AAAAGGAAAGATACATAGTTGGTACAGAGCACAATAAGTTTATTGAATTCGTATCGGTTTATCCGATGGATACCTAACTTTTAGCTTCGTTATTTTGAGATTCATTTGAACAGGTGGAAAGTCAC--GA-GGTTTGATGGGAAAAATGCATCGGA---------------AGAT----TTTT---------------ACAA--ATCGCGGGCACATAACTCAAATATACCCGAACTCATTTCATTAAAC-ACGATTG---AAATCAC-A------TTTTGCTTGTTTCAAACAAAACAATTTTT---TACTAT-----A-TAGTCGTCGTTTTGAAGTCATTTTTCGAAGTAACA
gi|3 : GAG-GGTCATCAG-TAACGCCGG-C--GAATCGGTTATAACGCCAGATTCCGGTAATTGTAACACCGCATTAACGGCGTTT----TACACGAC--AGAAGCAGATATCGGGA------AT----TAAAACATCCCATTTCTT-TCAAATGAGCTACAATATG-----AA----AAAG-TGCATAGCTTCTACGAGGCACAATAAGTCTATTGA--TCGTATC-GTTTAT-CGAT-GATATCTGA-TTTCAGCTTCGTT-TTTG-AGA-TCATT----CAGG-AGAAAGTCAC--AA-AG-TTGAC-AGAAAAATGCATCGGAAAAAG-TTCTAACGCAGAT----TTTT---------------ACAA--ATCACAGGCACAT-AC
gi|4 : GAA-GATAATCAG-TAAAGCCGG-T--GA-----------CGCTA--------TGGTTGTTATGCCGAATTAACGGCACTT----CACGC-ATTTAGAAGCAGATACATGTATCTGTTAC----TAAAACATCC-AATTTCTCTCAAATGAGCTACAATCTGGAAAAAA----AAAAATACATAGCTAGTACGAGGCACAATACGTTTATTGA--TCGTATC-GTTTAT-CCGT-GATACCTGA-TTTT-------------T-AGA-TAATT----CGGG-AGAAAGTCATTTAATGG-TTGAT-GAAAAATTGCATCGAAAGAAGTTTCGAGCGTAGATTTTTTTTT---------------AAAAATATTACAGGCAC
gi|5 : actATAAACTCATTTCA-TAAACAACGACTGG-AAATTCACAT------TTTTG-ATG-TTCAAACAAACTGG--TTT---TACAATATATATATA-TCGTC-TTTTGAAGTCATTTTAGAAAGTAACACCCGGTAACATGGAACAG-TGA--CGCCGATCACTGGCA--TTTTTA-CA-T-------
gi|6 : TT-TTTTG---TCATTTTCAAAAGTAACACCAAGTAACATGGAACAG-TAA--CGCCGATCAC-GGTAATTTCTTA-CA-TAGAAGGATTTAACCATCAATCAAATTAAATATT-------------GTTTCAGACGAAGACAGTAAATCCCA-AC---TATAGATGACAGTGCGTTATCAGAAacattgacactgtgcattttag
gi|7 : TAACAT--AACAA--AATTCGC-GGTCAT-GATAATTTCTTAACGAT-------TCTATCCATGAGTCAAATTGCAAATTTTTCTCTAAATTCGTTTAAGACGAAGTTAGT-------ATACAAATACAGATGACAACGTGATATCAGAACATAAA
gi|8 : AAACAAA-----ATTAAACAC-CAACGTCACAT-ATTAAACCGTATGGATACTATACAGCTTC-TCTGATTTTT-----TTTTATTTGGTTGCCGTTGTTGCAGTTACCGGCGATAAATTCTCCAAAATGTGTGGATTTCCAG
gi|9 : ataaaCTTATATCA-TAAGAAA-AACTGACAGAATTAC--------TCATG-TAA-TGCAAACAAGCAGG--TTTACCTACA-------------CAT-----TGA------TTTCGAAAGTAGCACCTCAAAACATGGAACAATTAA--CG-CGATCGT-GGTAA--TATTA-C--T-------TTTATTC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGCAATGATGCCCAGGTGACTGACCATTCTTACATGCATTGACATAATCTTGCATTTTCACCACAGA